Citrus Sinensis ID: 009506
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 533 | 2.2.26 [Sep-21-2011] | |||||||
| Q8GWE0 | 702 | Pentatricopeptide repeat- | yes | no | 0.812 | 0.616 | 0.733 | 0.0 | |
| Q9LS25 | 711 | Pentatricopeptide repeat- | no | no | 0.789 | 0.592 | 0.417 | 1e-96 | |
| Q9SIC9 | 918 | Pentatricopeptide repeat- | no | no | 0.771 | 0.447 | 0.247 | 2e-32 | |
| Q5G1S8 | 1440 | Pentatricopeptide repeat- | no | no | 0.759 | 0.281 | 0.236 | 4e-31 | |
| Q8GYP6 | 860 | Pentatricopeptide repeat- | no | no | 0.769 | 0.476 | 0.229 | 2e-29 | |
| Q9SSF9 | 855 | Pentatricopeptide repeat- | no | no | 0.761 | 0.474 | 0.232 | 2e-29 | |
| Q8RWS8 | 822 | Pentatricopeptide repeat- | no | no | 0.525 | 0.340 | 0.269 | 4e-27 | |
| Q9LYZ9 | 819 | Pentatricopeptide repeat- | no | no | 0.397 | 0.258 | 0.316 | 4e-26 | |
| Q9FIX3 | 747 | Pentatricopeptide repeat- | no | no | 0.450 | 0.321 | 0.303 | 3e-25 | |
| Q9LYT2 | 583 | Pentatricopeptide repeat- | no | no | 0.407 | 0.372 | 0.289 | 1e-24 |
| >sp|Q8GWE0|PP314_ARATH Pentatricopeptide repeat-containing protein At4g16390, chloroplastic OS=Arabidopsis thaliana GN=P67 PE=1 SV=3 | Back alignment and function desciption |
|---|
Score = 692 bits (1785), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/436 (73%), Positives = 377/436 (86%), Gaps = 3/436 (0%)
Query: 95 YDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 154
YD RAR EKWRID FSTLI++YG +GN+DGCLN+YEEMKA+GVKPN++ YN L+D+MG
Sbjct: 268 YD-RARTEKWRIDAVTFSTLIRIYGVSGNYDGCLNIYEEMKALGVKPNLVIYNRLIDSMG 326
Query: 155 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 214
RAKRPWQ K IYK++ NG +PNW+TYA+L+RAYGRARYG+D L++YREMKEKG+ L+V
Sbjct: 327 RAKRPWQAKIIYKDLITNGFTPNWSTYAALVRAYGRARYGDDALAIYREMKEKGLSLTVI 386
Query: 215 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 274
LYNTLL+MCAD Y DEAFEIF+DMK+ E C PDSWTFSS+IT+ +C G+VSEAEA +
Sbjct: 387 LYNTLLSMCADNRYVDEAFEIFQDMKNCETCDPDSWTFSSLITVYACSGRVSEAEAALLQ 446
Query: 275 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 334
M EAGFEP LFVLTS+IQCYGKA++ DDVVR +++ ELGITPDDRFCGCLLNVMTQTP
Sbjct: 447 MREAGFEPTLFVLTSVIQCYGKAKQVDDVVRTFDQVLELGITPDDRFCGCLLNVMTQTPS 506
Query: 335 EELGKLVECVEKSNSKLGYVVKLLLEEQDI-EGDFKKEATELFNSISKDVKKAYCNCLID 393
EE+GKL+ CVEK+ KLG VVK+L+EEQ+ EG FKKEA+EL +SI DVKKAY NCLID
Sbjct: 507 EEIGKLIGCVEKAKPKLGQVVKMLVEEQNCEEGVFKKEASELIDSIGSDVKKAYLNCLID 566
Query: 394 LCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSK 453
LCVNLN LE AC++L+LGL ++YT +QS+S TQWSLHLKSLSLGAALTALH+W+NDLS+
Sbjct: 567 LCVNLNKLERACEILQLGLEYDIYTGLQSKSATQWSLHLKSLSLGAALTALHVWMNDLSE 626
Query: 454 -ALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKVGWFLTTEAA 512
ALESGEEFPPLLGINTGHGKHKYSDKGLA+VFESHLKELNAPFH++PDKVGWFLTT A
Sbjct: 627 AALESGEEFPPLLGINTGHGKHKYSDKGLAAVFESHLKELNAPFHEAPDKVGWFLTTSVA 686
Query: 513 AKSWLESRSSLVSVPA 528
AK+WLESR S V A
Sbjct: 687 AKAWLESRRSAGGVSA 702
|
Involved in chloroplast RNA processing. Could bind RNA. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LS25|PP420_ARATH Pentatricopeptide repeat-containing protein At5g46580, chloroplastic OS=Arabidopsis thaliana GN=At5g46580 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 354 bits (908), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 177/424 (41%), Positives = 268/424 (63%), Gaps = 3/424 (0%)
Query: 98 RARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK 157
RA W+ D AFS L K++G AG++DG V +EMK++ VKPN++ YN LL+ MGRA
Sbjct: 281 RAVATGWKPDAIAFSVLGKMFGEAGDYDGIRYVLQEMKSMDVKPNVVVYNTLLEAMGRAG 340
Query: 158 RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYN 217
+P ++++ EM + GL+PN T +L++ YG+AR+ D L ++ EMK K + LYN
Sbjct: 341 KPGLARSLFNEMLEAGLTPNEKTLTALVKIYGKARWARDALQLWEEMKAKKWPMDFILYN 400
Query: 218 TLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 277
TLL MCAD+G +EA +F DMK S C+PD++++++M+ I GK +A +F EML+
Sbjct: 401 TLLNMCADIGLEEEAERLFNDMKESVQCRPDNFSYTAMLNIYGSGGKAEKAMELFEEMLK 460
Query: 278 AGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ-TPKEE 336
AG + N+ T L+QC GKA+R DDVV + + G+ PDDR CGCLL+VM E+
Sbjct: 461 AGVQVNVMGCTCLVQCLGKAKRIDDVVYVFDLSIKRGVKPDDRLCGCLLSVMALCESSED 520
Query: 337 LGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCV 396
K++ C+E++N KL V L+++E+ K+E + N+ + ++ +CNCLID+C
Sbjct: 521 AEKVMACLERANKKLVTFVNLIVDEKTEYETVKEEFKLVINATQVEARRPFCNCLIDICR 580
Query: 397 NLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALE 456
N E A +LL LG +Y + +++ +WSL ++SLS+GAA TAL W+ L+ ++
Sbjct: 581 GNNRHERAHELLYLGTLFGLYPGLHNKTIKEWSLDVRSLSVGAAETALEEWMRTLANIIK 640
Query: 457 SGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKVGWFLTTEAAAKSW 516
EE P L TG G H++S +GLA+ F HL++L+APF S D+ G F+ T+ SW
Sbjct: 641 RQEELPELFLAQTGTGTHRFS-QGLANSFALHLQQLSAPFRQS-DRPGIFVATKEDLVSW 698
Query: 517 LESR 520
LES+
Sbjct: 699 LESK 702
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protein At2g31400, chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 140 bits (354), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 120/484 (24%), Positives = 210/484 (43%), Gaps = 73/484 (15%)
Query: 105 RIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 162
RI PN ++ST+I + AG FD LN++ EM+ +G+ + ++YN LL + R +
Sbjct: 404 RIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEA 463
Query: 163 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 222
I +EM G+ + TY +LL YG+ ++ V+ EMK + + ++ Y+TL+
Sbjct: 464 LDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDG 523
Query: 223 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 282
+ G EA EIF + KS+ + D +S++I G V A ++ +EM + G P
Sbjct: 524 YSKGGLYKEAMEIFREFKSA-GLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISP 582
Query: 283 NLFVLTSLIQCYGKAQRTDDVV------------------------RALNRLPELGITPD 318
N+ S+I +G++ D R + +L +
Sbjct: 583 NVVTYNSIIDAFGRSATMDRSADYSNGGSLPFSSSALSALTETEGNRVIQLFGQLTTESN 642
Query: 319 DRFC----------GCLLNVMTQTPK-----------------------EELGKLVECVE 345
+R C+L V + + E+ L+E +
Sbjct: 643 NRTTKDCEEGMQELSCILEVFRKMHQLEIKPNVVTFSAILNACSRCNSFEDASMLLEELR 702
Query: 346 KSNSKL-GYVVKLLLEEQDIEGDFKKEATELF---NSISKDVKKAYCNCLIDLCVNLNLL 401
++K+ G V LL+ +++ + +A LF N + A+ N L D+ +
Sbjct: 703 LFDNKVYGVVHGLLMGQRE---NVWLQAQSLFDKVNEMDGSTASAFYNALTDMLWHFGQK 759
Query: 402 ENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALESGEEF 461
A + G + +V+ ++ S S L L +S GAA +H W+ ++ + G E
Sbjct: 760 RGAELVALEGRSRQVWENVWSDS----CLDLHLMSSGAARAMVHAWLLNIRSIVYEGHEL 815
Query: 462 PPLLGINTGHGKHK--YSDKGLASVFESHLKELNAPFHDSPDKVGWFLTTEAAAKSWLES 519
P +L I TG GKH D L E L+ ++APFH S +G F ++ + +WL
Sbjct: 816 PKVLSILTGWGKHSKVVGDGALRRAVEVLLRGMDAPFHLSKCNMGRFTSSGSVVATWLRE 875
Query: 520 RSSL 523
++L
Sbjct: 876 SATL 879
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q5G1S8|PP241_ARATH Pentatricopeptide repeat-containing protein At3g18110, chloroplastic OS=Arabidopsis thaliana GN=EMB1270 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 136 bits (342), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 100/423 (23%), Positives = 205/423 (48%), Gaps = 18/423 (4%)
Query: 104 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 163
++++ +++++K+Y ++ + VY+ +K G++P+ TYN L+ R +RP +
Sbjct: 923 FKVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEGY 982
Query: 164 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 223
+ ++M + GL P +TY SL+ A+G+ + E ++ E+ KG++L + Y+T++ +
Sbjct: 983 LLMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKIS 1042
Query: 224 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 283
D G +A ++ + MK++ +P T ++ S G EAE + + + + E
Sbjct: 1043 RDSGSDSKAEKLLQMMKNA-GIEPTLATMHLLMVSYSSSGNPQEAEKVLSNLKDTEVELT 1101
Query: 284 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT-QTPKEELGKLVE 342
+S+I Y +++ + + L + + G+ PD R C + + K E+ L++
Sbjct: 1102 TLPYSSVIDAYLRSKDYNSGIERLLEMKKEGLEPDHRIWTCFVRAASFSKEKIEVMLLLK 1161
Query: 343 CVEKSNSKLGYVVKLL-----LEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVN 397
+E L ++LL L +++G F+K SI + + N L++L
Sbjct: 1162 ALEDIGFDLP--IRLLAGRPELLVSEVDGWFEK-----LKSIEDNAALNFVNALLNLLWA 1214
Query: 398 LNLLENACKLLELGLTLEVYT-DIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKA-L 455
L A + +LG+ +++ D+ + W + LS GAAL AL +W++ + A L
Sbjct: 1215 FELRATASWVFQLGIKRGIFSLDVFRVADKDWGADFRRLSGGAALVALTLWLDHMQDASL 1274
Query: 456 ESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKVGWFLTTEAAAKS 515
E E P + + TG +Y+ L ++ L E+ +PF + G + + +
Sbjct: 1275 EGYPESPKSVVLITGTA--EYNGISLDKTLKACLWEMGSPFLPCKTRTGLLVAKAHSLRM 1332
Query: 516 WLE 518
WL+
Sbjct: 1333 WLK 1335
|
May play a role in embryogenesis. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8GYP6|PPR49_ARATH Pentatricopeptide repeat-containing protein At1g18900 OS=Arabidopsis thaliana GN=At1g18900 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 130 bits (328), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 96/418 (22%), Positives = 188/418 (44%), Gaps = 8/418 (1%)
Query: 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 166
D + TLI ++ AG D +++Y+ M+A G+ P+ TY+ +++ +G+A ++
Sbjct: 433 DRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLF 492
Query: 167 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 226
EM D G +PN TY ++ + +AR ++ L +YR+M+ G + Y+ ++ +
Sbjct: 493 CEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHC 552
Query: 227 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 286
GY +EA +F +M+ +N PD + ++ + G V +A + ML AG PN+
Sbjct: 553 GYLEEAEAVFTEMQ-QKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQAMLHAGLRPNVPT 611
Query: 287 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ-TPKEELGKLVECVE 345
SL+ + + + + L + LG+ P + LL+ T K ++G + +
Sbjct: 612 CNSLLSTFLRVNKIAEAYELLQNMLALGLRPSLQTYTLLLSCCTDGRSKLDMGFCGQLMA 671
Query: 346 KSNSKLG-YVVKLLLEEQDIEG--DFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLE 402
+ +++K+ D E + +L +S ++ K+ + ++D E
Sbjct: 672 STGHPAHMFLLKMPAAGPDGENVRNHANNFLDLMHSEDRESKRGLVDAVVDFLHKSGQKE 731
Query: 403 NACKLLELGLTLEVYTD-IQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALESGEEF 461
A + E+ V+ D ++ +S + W ++L +S G A+TAL + K + +
Sbjct: 732 EAGSVWEVAAQKNVFPDALREKSCSYWLINLHVMSEGTAVTALSRTLAWFRKQMLASGTC 791
Query: 462 PPLLGINTGHGKHKY--SDKGLASVFESHLKELNAPFHDSPDKVGWFLTTEAAAKSWL 517
P + I TG G+ + E L +PF G F+ + WL
Sbjct: 792 PSRIDIVTGWGRRSRVTGTSMVRQAVEELLNIFGSPFFTESGNSGCFVGSGEPLNRWL 849
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SSF9|PP123_ARATH Pentatricopeptide repeat-containing protein At1g74750 OS=Arabidopsis thaliana GN=At1g74750 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 130 bits (327), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 98/422 (23%), Positives = 185/422 (43%), Gaps = 16/422 (3%)
Query: 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 166
D + TLI ++ AG D +++Y+ M+ G+ P+ TY+ +++ +G+A ++
Sbjct: 428 DRVTYCTLIDIHAKAGFLDIAMDMYQRMQEAGLSPDTFTYSVIINCLGKAGHLPAAHRLF 487
Query: 167 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 226
EM G +PN T+ ++ + +AR E L +YR+M+ G Q Y+ ++ +
Sbjct: 488 CEMVGQGCTPNLVTFNIMIALHAKARNYETALKLYRDMQNAGFQPDKVTYSIVMEVLGHC 547
Query: 227 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 286
G+ +EA +F +M+ +N PD + ++ + G V +A + ML+AG PN+
Sbjct: 548 GFLEEAEGVFAEMQ-RKNWVPDEPVYGLLVDLWGKAGNVDKAWQWYQAMLQAGLRPNVPT 606
Query: 287 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKE-ELGKLVECVE 345
SL+ + + R + L + LG+ P + LL+ T ++G + +
Sbjct: 607 CNSLLSTFLRVHRMSEAYNLLQSMLALGLHPSLQTYTLLLSCCTDARSNFDMGFCGQLMA 666
Query: 346 KSNSKLGYVVKLLLEEQDIEG-------DFKKEATELFNSISKDVKKAYCNCLIDLCVNL 398
S G+ + L + G D + +S ++ K+ + ++D
Sbjct: 667 VS----GHPAHMFLLKMPPAGPDGQKVRDHVSNFLDFMHSEDRESKRGLMDAVVDFLHKS 722
Query: 399 NLLENACKLLELGLTLEVYTD-IQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALES 457
L E A + E+ VY D ++ +S + W ++L +S G A+ AL + K +
Sbjct: 723 GLKEEAGSVWEVAAGKNVYPDALREKSYSYWLINLHVMSEGTAVIALSRTLAWFRKQMLV 782
Query: 458 GEEFPPLLGINTGHGKHKY--SDKGLASVFESHLKELNAPFHDSPDKVGWFLTTEAAAKS 515
+ P + I TG G+ + E L N PF G F+ + K+
Sbjct: 783 SGDCPSRIDIVTGWGRRSRVTGTSMVRQAVEELLNIFNFPFFTENGNSGCFVGSGEPLKN 842
Query: 516 WL 517
WL
Sbjct: 843 WL 844
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8RWS8|PP199_ARATH Pentatricopeptide repeat-containing protein At2g41720 OS=Arabidopsis thaliana GN=EMB2654 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 123 bits (308), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 77/286 (26%), Positives = 140/286 (48%), Gaps = 6/286 (2%)
Query: 102 EKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 159
+KW P+A + LI +G AG + +N+ ++M + P+ TYNNL++ G +
Sbjct: 170 QKWSCKPDAETYDALINAHGRAGQWRWAMNLMDDMLRAAIAPSRSTYNNLINACGSSGNW 229
Query: 160 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 219
+ + K+MTDNG+ P+ T+ +L AY R LS + MK ++ T +N +
Sbjct: 230 REALEVCKKMTDNGVGPDLVTHNIVLSAYKSGRQYSKALSYFELMKGAKVRPDTTTFNII 289
Query: 220 LAMCADVGYTDEAFEIFEDMKSSE-NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA 278
+ + +G + +A ++F M+ C+PD TF+S++ + S +G++ A+F M+
Sbjct: 290 IYCLSKLGQSSQALDLFNSMREKRAECRPDVVTFTSIMHLYSVKGEIENCRAVFEAMVAE 349
Query: 279 GFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELG 338
G +PN+ +L+ Y + + L + + GI PD CLLN ++ +
Sbjct: 350 GLKPNIVSYNALMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTCLLNSYGRSRQPGKA 409
Query: 339 KLVECVEKSNSKLGYVV--KLLLEEQDIEGDFKKEATELFNSISKD 382
K V + + + VV L++ G F EA E+F + +D
Sbjct: 410 KEVFLMMRKERRKPNVVTYNALIDAYGSNG-FLAEAVEIFRQMEQD 454
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 120 bits (300), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 68/215 (31%), Positives = 110/215 (51%), Gaps = 3/215 (1%)
Query: 106 IDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 163
I P+A++ TLI V+EEMKA G + +TYN LLD G++ RP +
Sbjct: 275 IAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAM 334
Query: 164 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 223
+ EM NG SP+ TY SL+ AY R ++ + + +M EKG + V Y TLL+
Sbjct: 335 KVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGF 394
Query: 224 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 283
G + A IFE+M+++ C+P+ TF++ I + RGK +E +F+E+ G P+
Sbjct: 395 ERAGKVESAMSIFEEMRNA-GCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPD 453
Query: 284 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 318
+ +L+ +G+ +V + G P+
Sbjct: 454 IVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPE 488
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 117 bits (292), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 74/244 (30%), Positives = 124/244 (50%), Gaps = 4/244 (1%)
Query: 86 RASKLKEKSYDTRARNEK-WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 144
R ++KE S+ N + + +D ++TLIK Y GNF L ++ EM G+ P++I
Sbjct: 287 REGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVI 346
Query: 145 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 204
TY +L+ +M +A + +M GL PN TY +L+ + + Y + V REM
Sbjct: 347 TYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREM 406
Query: 205 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG- 263
+ G SV YN L+ G ++A + EDMK + PD ++S++++ CR
Sbjct: 407 NDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMK-EKGLSPDVVSYSTVLS-GFCRSY 464
Query: 264 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 323
V EA + EM+E G +P+ +SLIQ + + +RT + + +G+ PD+
Sbjct: 465 DVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYT 524
Query: 324 CLLN 327
L+N
Sbjct: 525 ALIN 528
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LYT2|PP287_ARATH Pentatricopeptide repeat-containing protein At3g59040 OS=Arabidopsis thaliana GN=At3g59040 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 115 bits (287), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 114/221 (51%), Gaps = 4/221 (1%)
Query: 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 166
D + +I +Y AGN++ V+ M GV + +TYN+L+ K +V IY
Sbjct: 246 DQKMYHMMIYMYKKAGNYEKARKVFSSMVGKGVPQSTVTYNSLMSFETSYK---EVSKIY 302
Query: 167 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 226
+M + + P+ +YA L++AYGRAR E+ LSV+ EM + G++ + YN LL A
Sbjct: 303 DQMQRSDIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAIS 362
Query: 227 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 286
G ++A +F+ M+ + PD W++++M++ + AE F + GFEPN+
Sbjct: 363 GMVEQAKTVFKSMRR-DRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVT 421
Query: 287 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 327
+LI+ Y KA + ++ ++ GI + +++
Sbjct: 422 YGTLIKGYAKANDVEKMMEVYEKMRLSGIKANQTILTTIMD 462
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 533 | ||||||
| 359495626 | 701 | PREDICTED: pentatricopeptide repeat-cont | 0.812 | 0.617 | 0.805 | 0.0 | |
| 147841962 | 701 | hypothetical protein VITISV_001456 [Viti | 0.812 | 0.617 | 0.798 | 0.0 | |
| 449443502 | 704 | PREDICTED: pentatricopeptide repeat-cont | 0.801 | 0.606 | 0.785 | 0.0 | |
| 26452823 | 702 | putative salt-inducible protein [Arabido | 0.812 | 0.616 | 0.736 | 0.0 | |
| 224137224 | 647 | predicted protein [Populus trichocarpa] | 0.810 | 0.667 | 0.746 | 0.0 | |
| 9755842 | 702 | 67kD chloroplastic RNA-binding protein, | 0.812 | 0.616 | 0.733 | 0.0 | |
| 224089803 | 700 | predicted protein [Populus trichocarpa] | 0.799 | 0.608 | 0.75 | 0.0 | |
| 240255936 | 702 | pentatricopeptide repeat-containing prot | 0.812 | 0.616 | 0.733 | 0.0 | |
| 9755886 | 700 | 67kD chloroplastic RNA-binding protein, | 0.812 | 0.618 | 0.729 | 0.0 | |
| 2244996 | 777 | salt-inducible protein homolog [Arabidop | 0.812 | 0.557 | 0.727 | 0.0 |
| >gi|359495626|ref|XP_002269600.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16390, chloroplastic [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 746 bits (1926), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/436 (80%), Positives = 391/436 (89%), Gaps = 3/436 (0%)
Query: 93 KSYDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 152
K YD RAR EKWRIDP FSTLI++YG +GNFDGCLNVYEEMKA+GVKPN++ YN LLD
Sbjct: 267 KLYD-RARTEKWRIDPVTFSTLIRIYGMSGNFDGCLNVYEEMKALGVKPNLVIYNTLLDA 325
Query: 153 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 212
MGRAKRPWQ K IYKEMT+NGL P+W TYA+LLRAYGRARY ED L VY+EMKEKG++LS
Sbjct: 326 MGRAKRPWQAKNIYKEMTNNGLQPSWGTYAALLRAYGRARYAEDALIVYKEMKEKGLELS 385
Query: 213 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMF 272
V LYNTLLAMCADVGYT+EA IFEDMKSS NC PDSWTFSS+ITI SC GKVSEAEAM
Sbjct: 386 VVLYNTLLAMCADVGYTEEAAAIFEDMKSSGNCMPDSWTFSSLITIYSCSGKVSEAEAML 445
Query: 273 NEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT 332
N MLEAGFEPN+FVLTSLIQCYGKA RTD+VVR +RL EL ITPDDRFCGC+LNVMTQ+
Sbjct: 446 NAMLEAGFEPNIFVLTSLIQCYGKANRTDEVVRTFDRLLELDITPDDRFCGCMLNVMTQS 505
Query: 333 PKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLI 392
PKEELGKL++C++K+N KLG VVKLLLEEQ+ EG F+KEA+ELF+SIS DVKKAYCNCLI
Sbjct: 506 PKEELGKLIDCIDKANPKLGNVVKLLLEEQNGEGTFRKEASELFDSISADVKKAYCNCLI 565
Query: 393 DLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLS 452
DLCVNLNLLE AC+L +LGLTLE+Y DIQS+SPTQWSLHLKSLSLGAALTALHIW+NDLS
Sbjct: 566 DLCVNLNLLEKACELFDLGLTLEIYIDIQSKSPTQWSLHLKSLSLGAALTALHIWMNDLS 625
Query: 453 KALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKVGWFLTTEAA 512
KA+E GEE P +LGINTGHGKHKYSDKGLASVFESHLKELNAPFH++PDKVGWFLTT+ A
Sbjct: 626 KAVEVGEELPAVLGINTGHGKHKYSDKGLASVFESHLKELNAPFHEAPDKVGWFLTTKVA 685
Query: 513 AKSWLESRSS--LVSV 526
A SWLESRS+ LV+V
Sbjct: 686 ATSWLESRSAPELVAV 701
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147841962|emb|CAN63129.1| hypothetical protein VITISV_001456 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 738 bits (1904), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/436 (79%), Positives = 388/436 (88%), Gaps = 3/436 (0%)
Query: 93 KSYDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 152
K YD RAR EKWRIDP FSTLI++YG +GNFDGCLNVYEEMKA+GVKPN++ YN LLD
Sbjct: 267 KLYD-RARTEKWRIDPVTFSTLIRIYGMSGNFDGCLNVYEEMKALGVKPNLVIYNTLLDA 325
Query: 153 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 212
MGRAKRPWQ K IYKEMT+NGL +W TYA+LLRAYGRARY ED L VY+EMKEKG++LS
Sbjct: 326 MGRAKRPWQAKNIYKEMTNNGLQLSWGTYAALLRAYGRARYAEDALIVYKEMKEKGLELS 385
Query: 213 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMF 272
V LYNTLLAMCADVGYT+EA IFEDMKSS NC PDSWTFSS+ITI SC GKVSEAEAM
Sbjct: 386 VVLYNTLLAMCADVGYTEEAAAIFEDMKSSGNCMPDSWTFSSLITIYSCSGKVSEAEAML 445
Query: 273 NEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT 332
N MLEAGFEPN+FVLTSLIQCYGKA RTD+VVR +RL EL ITPDDRFCGC+LNVMTQ+
Sbjct: 446 NAMLEAGFEPNIFVLTSLIQCYGKANRTDEVVRTFDRLLELDITPDDRFCGCMLNVMTQS 505
Query: 333 PKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLI 392
PKEELGKL++C++K+N KLG VVKLLLEEQ+ EG F+KEA+ELF+SIS DV KAYCNCLI
Sbjct: 506 PKEELGKLIDCIDKANPKLGNVVKLLLEEQNGEGTFRKEASELFDSISADVXKAYCNCLI 565
Query: 393 DLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLS 452
DLCVNLNLLE AC+L +LGLTLE+Y DIQS+SPTQWSLHLKSLSLGAALTALHIW+NDLS
Sbjct: 566 DLCVNLNLLEKACELFDLGLTLEIYIDIQSKSPTQWSLHLKSLSLGAALTALHIWMNDLS 625
Query: 453 KALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKVGWFLTTEAA 512
KA+E GEE P +LGINTGHGKHKYSDKGLASVFESHLKELNAPFH++PDKV WFLTT+ A
Sbjct: 626 KAVEVGEELPAVLGINTGHGKHKYSDKGLASVFESHLKELNAPFHEAPDKVXWFLTTKVA 685
Query: 513 AKSWLESRSS--LVSV 526
A SWLESRS+ LV+V
Sbjct: 686 ATSWLESRSAPELVAV 701
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449443502|ref|XP_004139516.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390, chloroplastic-like [Cucumis sativus] gi|449492820|ref|XP_004159111.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 731 bits (1887), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/428 (78%), Positives = 384/428 (89%), Gaps = 1/428 (0%)
Query: 95 YDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 154
YD RAR E WRIDP FST+IK++G AGN+DGCLNVYEEMKAIG+KPN++ YN LLD MG
Sbjct: 272 YD-RARTENWRIDPATFSTMIKIHGVAGNYDGCLNVYEEMKAIGIKPNLVIYNCLLDAMG 330
Query: 155 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 214
RAKRPWQ+KTIYKEM NG SP+W TYASLLRAYGRARYGED L VY+EMKEKG+QL+V
Sbjct: 331 RAKRPWQIKTIYKEMIKNGFSPSWATYASLLRAYGRARYGEDALIVYKEMKEKGLQLNVI 390
Query: 215 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 274
LYNTLLAMCADVGY +EA EIF+DMKSS C PDSWTFSSMITI SC GKVSEAE M N+
Sbjct: 391 LYNTLLAMCADVGYVNEAVEIFQDMKSSGTCSPDSWTFSSMITIYSCGGKVSEAEEMLND 450
Query: 275 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 334
M+EAGF+PN+FVLTSLIQCYGKA+R DDVVR N+L ELG+TPDDRFCGCLLNV+TQTPK
Sbjct: 451 MVEAGFDPNIFVLTSLIQCYGKAKRVDDVVRTFNQLIELGLTPDDRFCGCLLNVITQTPK 510
Query: 335 EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDL 394
ELGKL++CV ++N KLG+VV+LLL EQD EG+F+ EA+ELF+ +S DV+KAYCNCLIDL
Sbjct: 511 GELGKLIDCVVRANPKLGFVVELLLGEQDKEGNFRTEASELFSVVSADVRKAYCNCLIDL 570
Query: 395 CVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKA 454
CVNL+LL+ AC+LL+LGLTL++Y D+QSRSPTQWSL+LK LSLGAALTALH+WI DL+K
Sbjct: 571 CVNLDLLDKACELLDLGLTLQIYKDLQSRSPTQWSLYLKGLSLGAALTALHVWIKDLTKV 630
Query: 455 LESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKVGWFLTTEAAAK 514
LESGEE PPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFH++P+KVGWFLTT+ AAK
Sbjct: 631 LESGEELPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHEAPEKVGWFLTTKVAAK 690
Query: 515 SWLESRSS 522
SWLESRSS
Sbjct: 691 SWLESRSS 698
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|26452823|dbj|BAC43491.1| putative salt-inducible protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 697 bits (1798), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/436 (73%), Positives = 379/436 (86%), Gaps = 3/436 (0%)
Query: 95 YDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 154
YD RAR EKWRID FSTLI++YG +GN+DGCLN+YEEMKA+GVKPN++ YN L+D+MG
Sbjct: 268 YD-RARTEKWRIDAVTFSTLIRIYGVSGNYDGCLNIYEEMKALGVKPNLVIYNRLIDSMG 326
Query: 155 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 214
RAKRPWQ K IYK++ NG +PNW+TYA+L+RAYGRARYG+D L++YREMKEKG+ L+V
Sbjct: 327 RAKRPWQAKIIYKDLITNGFTPNWSTYAALVRAYGRARYGDDALAIYREMKEKGLSLTVI 386
Query: 215 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 274
LYNTLL+MCAD+GY DEAFEIF+DMK+ E C PDSWTFSS+IT+ +C G+VSEAEA +
Sbjct: 387 LYNTLLSMCADIGYVDEAFEIFQDMKNCETCDPDSWTFSSLITVYACSGRVSEAEAALLQ 446
Query: 275 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 334
M EAGFEP LFVLTS+IQCYGKA++ DDVVR +++ ELGITPDDRFCGCLLNVMTQTP
Sbjct: 447 MREAGFEPTLFVLTSVIQCYGKAKQVDDVVRTFDQVLELGITPDDRFCGCLLNVMTQTPS 506
Query: 335 EELGKLVECVEKSNSKLGYVVKLLLEEQDI-EGDFKKEATELFNSISKDVKKAYCNCLID 393
EE+GKL+ CVEK+ KLG VVK+L+EEQ+ EG FKKEA+EL +SI DVKKAY NCLID
Sbjct: 507 EEIGKLIGCVEKAKPKLGQVVKMLVEEQNCEEGVFKKEASELIDSIGSDVKKAYLNCLID 566
Query: 394 LCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSK 453
LCVNLN LE AC++L+LGL ++YT +QS+S TQWSLHLKSLSLGAALTALH+W+NDLS+
Sbjct: 567 LCVNLNKLERACEILQLGLEYDIYTGLQSKSATQWSLHLKSLSLGAALTALHVWMNDLSE 626
Query: 454 -ALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKVGWFLTTEAA 512
ALESGEEFPPLLGINTGHGKHKYSDKGLA+VFESHLKELNAPFH++PDKVGWFLTT A
Sbjct: 627 AALESGEEFPPLLGINTGHGKHKYSDKGLAAVFESHLKELNAPFHEAPDKVGWFLTTSVA 686
Query: 513 AKSWLESRSSLVSVPA 528
AK+WLESR S V A
Sbjct: 687 AKAWLESRRSAGGVSA 702
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224137224|ref|XP_002322504.1| predicted protein [Populus trichocarpa] gi|222867134|gb|EEF04265.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 694 bits (1792), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/434 (74%), Positives = 379/434 (87%), Gaps = 2/434 (0%)
Query: 95 YDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 154
YD RAR EKWR+D FSTLI++Y +GNFD CLNVYEEMKA+GVKPN++ YN LLD MG
Sbjct: 216 YD-RARTEKWRLDTTTFSTLIRIYKDSGNFDCCLNVYEEMKALGVKPNLVIYNTLLDAMG 274
Query: 155 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 214
RA+RPWQ K Y+++ D+GLSP++ TYA+LLRAYGRARYGEDT+ +Y+EMKEK + L+V
Sbjct: 275 RARRPWQAKKFYQDIIDSGLSPSYATYAALLRAYGRARYGEDTIKIYKEMKEKELSLNVL 334
Query: 215 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 274
LYNT+LAMCAD+G+ DEA EIFEDMK+S PDSWTFSSMIT+ SC GKVSEAE M NE
Sbjct: 335 LYNTILAMCADLGFVDEAIEIFEDMKNS-GISPDSWTFSSMITMSSCCGKVSEAENMLNE 393
Query: 275 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 334
M EAGF+PN+FVLTSLIQCYGKAQR DDVV+ NRL EL ITPDDRFCGCLLNVMTQTP
Sbjct: 394 MFEAGFQPNIFVLTSLIQCYGKAQRIDDVVKTFNRLYELLITPDDRFCGCLLNVMTQTPN 453
Query: 335 EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDL 394
EELGKLV+CVE++N KLG+VVKLL+EEQ EG+FKKEA +LF++IS +VKKAYCNCLIDL
Sbjct: 454 EELGKLVDCVERANPKLGHVVKLLVEEQGNEGNFKKEAADLFDNISTEVKKAYCNCLIDL 513
Query: 395 CVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKA 454
CV LN+LE AC+LL+ GLTL +YTDIQS++ TQWSL+LKSLS GAALTALH+WINDLSKA
Sbjct: 514 CVKLNMLERACELLDHGLTLGIYTDIQSKTSTQWSLNLKSLSSGAALTALHVWINDLSKA 573
Query: 455 LESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKVGWFLTTEAAAK 514
LE+GE+ PPLLGINTGHGKHKYS+KGLA+VFESHLKELNAPFH++PDKVGWFLTT+ AA+
Sbjct: 574 LEAGEQLPPLLGINTGHGKHKYSEKGLANVFESHLKELNAPFHEAPDKVGWFLTTKVAAE 633
Query: 515 SWLESRSSLVSVPA 528
SWLESR +V A
Sbjct: 634 SWLESRKLADAVAA 647
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|9755842|emb|CAC01928.1| 67kD chloroplastic RNA-binding protein, P67 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 694 bits (1792), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/436 (73%), Positives = 378/436 (86%), Gaps = 3/436 (0%)
Query: 95 YDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 154
YD RAR EKWRID FSTLI++YG +GN+DGCLN+YEEMKA+GVKPN++ YN L+D+MG
Sbjct: 268 YD-RARTEKWRIDAVTFSTLIRIYGVSGNYDGCLNIYEEMKALGVKPNLVIYNRLIDSMG 326
Query: 155 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 214
RAKRPWQ K IYK++ NG +PNW+TYA+L+RAYGRARYG+D L++YREMKEKG+ L+V
Sbjct: 327 RAKRPWQAKIIYKDLITNGFTPNWSTYAALVRAYGRARYGDDALAIYREMKEKGLSLTVI 386
Query: 215 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 274
LYNTLL+MCAD+GY DEAFEIF+DMK+ E C PDSWTFSS+IT+ +C G+VSEAEA +
Sbjct: 387 LYNTLLSMCADIGYVDEAFEIFQDMKNCETCDPDSWTFSSLITVYACSGRVSEAEAALLQ 446
Query: 275 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 334
M EAGFEP LFVLTS+IQCYGKA++ DDVVR +++ ELGITPDDRFCGCLLNVMTQTP
Sbjct: 447 MREAGFEPTLFVLTSVIQCYGKAKQVDDVVRTFDQVLELGITPDDRFCGCLLNVMTQTPS 506
Query: 335 EELGKLVECVEKSNSKLGYVVKLLLEEQDI-EGDFKKEATELFNSISKDVKKAYCNCLID 393
EE+GKL+ CVEK+ KLG VVK+L+EEQ+ EG FKKEA+EL +SI DVKKAY NCLID
Sbjct: 507 EEIGKLIGCVEKAKPKLGQVVKMLVEEQNCEEGVFKKEASELIDSIGSDVKKAYLNCLID 566
Query: 394 LCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSK 453
LCVNLN LE AC++L+LGL ++YT +QS+S TQWSLHLKSLSLGAALTALH+W+NDLS+
Sbjct: 567 LCVNLNKLERACEILQLGLEYDIYTGLQSKSATQWSLHLKSLSLGAALTALHVWMNDLSE 626
Query: 454 -ALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKVGWFLTTEAA 512
ALESGEEFPPLLGINTGHGKHKYSDKGLA+VFESHLKELNAPFH++PDKVGWFLTT A
Sbjct: 627 AALESGEEFPPLLGINTGHGKHKYSDKGLAAVFESHLKELNAPFHEAPDKVGWFLTTSVA 686
Query: 513 AKSWLESRSSLVSVPA 528
AK+WLE R S V A
Sbjct: 687 AKAWLEFRRSAGGVSA 702
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224089803|ref|XP_002308816.1| predicted protein [Populus trichocarpa] gi|222854792|gb|EEE92339.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 692 bits (1787), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/428 (75%), Positives = 375/428 (87%), Gaps = 2/428 (0%)
Query: 95 YDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 154
YD RAR +WR+D AFSTLI++Y AGNFDGCLNVYEEMKA+GVKPN++ YN LLD MG
Sbjct: 269 YD-RARTGEWRLDATAFSTLIRIYKVAGNFDGCLNVYEEMKALGVKPNLVIYNILLDAMG 327
Query: 155 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 214
RAKRPWQVK Y+++ DNGLSP++ TYA+LL AYGRARYGED +YREMKEKG+ L+V
Sbjct: 328 RAKRPWQVKKFYQDIIDNGLSPSFVTYAALLHAYGRARYGEDAFKIYREMKEKGLGLNVV 387
Query: 215 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 274
LYN++LAMCAD+G+ D+A EIFEDMKSS +PDSWTFSSMITI SC GKVSEAE NE
Sbjct: 388 LYNSILAMCADLGHVDKAVEIFEDMKSS-GIKPDSWTFSSMITIFSCCGKVSEAENTLNE 446
Query: 275 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 334
M EAGF+PN+F+LTSLIQCYGKAQR DDVV NR+ EL ITPDDRFCGCLLNVMTQTP
Sbjct: 447 MFEAGFQPNIFILTSLIQCYGKAQRIDDVVNTFNRIFELVITPDDRFCGCLLNVMTQTPN 506
Query: 335 EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDL 394
EEL KLV+C E++N KLGYVVKLL+EEQD EG+FK EAT+LF+SIS +VKKAYCNCLIDL
Sbjct: 507 EELSKLVKCAERANPKLGYVVKLLVEEQDSEGNFKNEATDLFDSISTEVKKAYCNCLIDL 566
Query: 395 CVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKA 454
C+ LN+LE AC+LL+LGLTLE+YT+I SR+ TQWSL+LKSLS GAA+TALHIW+NDLSK
Sbjct: 567 CIKLNMLERACELLDLGLTLEIYTNIMSRTSTQWSLNLKSLSPGAAMTALHIWMNDLSKV 626
Query: 455 LESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKVGWFLTTEAAAK 514
LE+GE+ PPLLGINTGHGKHKYS+KGLA+VFES+LKELN+PFH++PDKVGWFLTT+ AA+
Sbjct: 627 LEAGEQLPPLLGINTGHGKHKYSEKGLANVFESYLKELNSPFHEAPDKVGWFLTTKVAAE 686
Query: 515 SWLESRSS 522
SWLESR S
Sbjct: 687 SWLESRKS 694
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|240255936|ref|NP_193372.6| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|374095491|sp|Q8GWE0.3|PP314_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g16390, chloroplastic; AltName: Full=Chloroplastic RNA-binding protein P67; Flags: Precursor gi|332658341|gb|AEE83741.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 692 bits (1785), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/436 (73%), Positives = 377/436 (86%), Gaps = 3/436 (0%)
Query: 95 YDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 154
YD RAR EKWRID FSTLI++YG +GN+DGCLN+YEEMKA+GVKPN++ YN L+D+MG
Sbjct: 268 YD-RARTEKWRIDAVTFSTLIRIYGVSGNYDGCLNIYEEMKALGVKPNLVIYNRLIDSMG 326
Query: 155 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 214
RAKRPWQ K IYK++ NG +PNW+TYA+L+RAYGRARYG+D L++YREMKEKG+ L+V
Sbjct: 327 RAKRPWQAKIIYKDLITNGFTPNWSTYAALVRAYGRARYGDDALAIYREMKEKGLSLTVI 386
Query: 215 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 274
LYNTLL+MCAD Y DEAFEIF+DMK+ E C PDSWTFSS+IT+ +C G+VSEAEA +
Sbjct: 387 LYNTLLSMCADNRYVDEAFEIFQDMKNCETCDPDSWTFSSLITVYACSGRVSEAEAALLQ 446
Query: 275 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 334
M EAGFEP LFVLTS+IQCYGKA++ DDVVR +++ ELGITPDDRFCGCLLNVMTQTP
Sbjct: 447 MREAGFEPTLFVLTSVIQCYGKAKQVDDVVRTFDQVLELGITPDDRFCGCLLNVMTQTPS 506
Query: 335 EELGKLVECVEKSNSKLGYVVKLLLEEQDI-EGDFKKEATELFNSISKDVKKAYCNCLID 393
EE+GKL+ CVEK+ KLG VVK+L+EEQ+ EG FKKEA+EL +SI DVKKAY NCLID
Sbjct: 507 EEIGKLIGCVEKAKPKLGQVVKMLVEEQNCEEGVFKKEASELIDSIGSDVKKAYLNCLID 566
Query: 394 LCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSK 453
LCVNLN LE AC++L+LGL ++YT +QS+S TQWSLHLKSLSLGAALTALH+W+NDLS+
Sbjct: 567 LCVNLNKLERACEILQLGLEYDIYTGLQSKSATQWSLHLKSLSLGAALTALHVWMNDLSE 626
Query: 454 -ALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKVGWFLTTEAA 512
ALESGEEFPPLLGINTGHGKHKYSDKGLA+VFESHLKELNAPFH++PDKVGWFLTT A
Sbjct: 627 AALESGEEFPPLLGINTGHGKHKYSDKGLAAVFESHLKELNAPFHEAPDKVGWFLTTSVA 686
Query: 513 AKSWLESRSSLVSVPA 528
AK+WLESR S V A
Sbjct: 687 AKAWLESRRSAGGVSA 702
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|9755886|emb|CAC01940.1| 67kD chloroplastic RNA-binding protein, P67.1 [Raphanus sativus] | Back alignment and taxonomy information |
|---|
Score = 688 bits (1776), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/436 (72%), Positives = 374/436 (85%), Gaps = 3/436 (0%)
Query: 95 YDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 154
YD RAR EKWRIDP FSTLI++YG AGN+DGCLN+YEEMK++GVKPN++ YN LLD+MG
Sbjct: 266 YD-RARTEKWRIDPVTFSTLIRIYGYAGNYDGCLNIYEEMKSLGVKPNLVIYNRLLDSMG 324
Query: 155 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 214
+AKRPWQ I+K++ NG PNW+TYA+L+RAYGRARYGED L +YR+MK KG++L+V
Sbjct: 325 KAKRPWQATMIHKDLISNGFEPNWSTYAALIRAYGRARYGEDALVIYRQMKGKGLELTVI 384
Query: 215 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 274
LYNTLL+MCAD+GY DEAFEIF+DMKSS C+PDSWTFSS+IT+ SC G+VSEAEA E
Sbjct: 385 LYNTLLSMCADIGYVDEAFEIFQDMKSSGTCEPDSWTFSSLITVYSCCGRVSEAEAALRE 444
Query: 275 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 334
M EAGFEP LFVLTSLIQCYGKA++ DDVVR ++ ELGI PDDRFCGCLLNVMTQTP
Sbjct: 445 MREAGFEPTLFVLTSLIQCYGKAKQVDDVVRTFEQVLELGIEPDDRFCGCLLNVMTQTPT 504
Query: 335 EELGKLVECVEKSNSKLGYVVKLLLEEQDI-EGDFKKEATELFNSISKDVKKAYCNCLID 393
EE+GKL+ECVEK+ KLG VVK+L+EE++ EG KKEA+EL +SI DV KAY NCLID
Sbjct: 505 EEIGKLIECVEKAKPKLGRVVKMLVEEENCEEGVLKKEASELIDSIGSDVNKAYLNCLID 564
Query: 394 LCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSK 453
LCVNLN LE AC++L+LGL ++Y+ +QS+S TQWSLHLKSLSLGAALTALH+W+NDLS+
Sbjct: 565 LCVNLNKLEKACEILQLGLEYDIYSGLQSKSATQWSLHLKSLSLGAALTALHVWMNDLSE 624
Query: 454 -ALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKVGWFLTTEAA 512
AL SGEEFPPLLGINTGHGKHKYSDKGLA+VFESHLKELNAPFH++PDKVGWFLTT A
Sbjct: 625 AALTSGEEFPPLLGINTGHGKHKYSDKGLAAVFESHLKELNAPFHEAPDKVGWFLTTSVA 684
Query: 513 AKSWLESRSSLVSVPA 528
AK+WLESR S V A
Sbjct: 685 AKTWLESRRSSAEVSA 700
|
Source: Raphanus sativus Species: Raphanus sativus Genus: Raphanus Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|2244996|emb|CAB10416.1| salt-inducible protein homolog [Arabidopsis thaliana] gi|7268388|emb|CAB78681.1| salt-inducible protein homolog [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 688 bits (1776), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/436 (72%), Positives = 377/436 (86%), Gaps = 3/436 (0%)
Query: 95 YDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 154
YD RAR EKWRID FSTLI++YG +GN+DGCLN+YEEMKA+GVKPN++ YN L+D+MG
Sbjct: 343 YD-RARTEKWRIDAVTFSTLIRIYGVSGNYDGCLNIYEEMKALGVKPNLVIYNRLIDSMG 401
Query: 155 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 214
RAKRPWQ K IYK++ NG +PNW+TYA+L+RAYGRARYG+D L++YREMKEKG+ L+V
Sbjct: 402 RAKRPWQAKIIYKDLITNGFTPNWSTYAALVRAYGRARYGDDALAIYREMKEKGLSLTVI 461
Query: 215 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 274
LYNTLL+MCAD + DEAFEIF+DMK+ E C PDSWTFSS+IT+ +C G+VS+AEA +
Sbjct: 462 LYNTLLSMCADNRHVDEAFEIFQDMKNCETCDPDSWTFSSLITVYACSGRVSKAEAALLQ 521
Query: 275 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 334
+ EAGFEP LFVLTS+IQCYGKA++ DDVVR +++ ELGITPDDRFCGCLLNVMTQTP
Sbjct: 522 IREAGFEPTLFVLTSVIQCYGKAKQVDDVVRTFDQVLELGITPDDRFCGCLLNVMTQTPS 581
Query: 335 EELGKLVECVEKSNSKLGYVVKLLLEEQDI-EGDFKKEATELFNSISKDVKKAYCNCLID 393
EE+GKL+ CVEK+ KLG VVK+L+EEQ+ EG FKKEA+EL +SI DVKKAY NCLID
Sbjct: 582 EEIGKLIGCVEKAKPKLGQVVKMLVEEQNCEEGVFKKEASELIDSIGSDVKKAYLNCLID 641
Query: 394 LCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSK 453
LCVNLN LE AC++L+LGL ++YT +QS+S TQWSLHLKSLSLGAALTALH+W+NDLS+
Sbjct: 642 LCVNLNKLERACEILQLGLEYDIYTGLQSKSATQWSLHLKSLSLGAALTALHVWMNDLSE 701
Query: 454 -ALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKVGWFLTTEAA 512
ALESGEEFPPLLGINTGHGKHKYSDKGLA+VFESHLKELNAPFH++PDKVGWFLTT A
Sbjct: 702 AALESGEEFPPLLGINTGHGKHKYSDKGLAAVFESHLKELNAPFHEAPDKVGWFLTTSVA 761
Query: 513 AKSWLESRSSLVSVPA 528
AK+WLESR S V A
Sbjct: 762 AKAWLESRRSAGGVSA 777
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 533 | ||||||
| TAIR|locus:2130549 | 702 | SVR7 "suppressor of variegatio | 0.812 | 0.616 | 0.733 | 1.5e-179 | |
| TAIR|locus:2142320 | 711 | AT5G46580 "AT5G46580" [Arabido | 0.844 | 0.632 | 0.405 | 3.1e-90 | |
| TAIR|locus:2027212 | 855 | AT1G74750 [Arabidopsis thalian | 0.806 | 0.502 | 0.231 | 2.6e-28 | |
| TAIR|locus:2061310 | 918 | GUN1 "AT2G31400" [Arabidopsis | 0.557 | 0.323 | 0.289 | 1.8e-22 | |
| TAIR|locus:2054331 | 822 | EMB2654 "EMBRYO DEFECTIVE 2654 | 0.639 | 0.414 | 0.256 | 3.6e-26 | |
| TAIR|locus:2164910 | 747 | EMB2745 "EMBRYO DEFECTIVE 2745 | 0.577 | 0.412 | 0.295 | 4.5e-24 | |
| TAIR|locus:2077735 | 590 | AT3G59040 "AT3G59040" [Arabido | 0.551 | 0.498 | 0.267 | 4e-23 | |
| TAIR|locus:2151281 | 819 | AT5G02860 [Arabidopsis thalian | 0.420 | 0.273 | 0.297 | 5.2e-23 | |
| TAIR|locus:2044430 | 822 | AT2G18940 [Arabidopsis thalian | 0.459 | 0.298 | 0.261 | 6.8e-23 | |
| TAIR|locus:2027166 | 862 | PTAC2 "plastid transcriptional | 0.735 | 0.454 | 0.223 | 7.5e-21 |
| TAIR|locus:2130549 SVR7 "suppressor of variegation 7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1743 (618.6 bits), Expect = 1.5e-179, P = 1.5e-179
Identities = 320/436 (73%), Positives = 377/436 (86%)
Query: 95 YDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 154
YD RAR EKWRID FSTLI++YG +GN+DGCLN+YEEMKA+GVKPN++ YN L+D+MG
Sbjct: 268 YD-RARTEKWRIDAVTFSTLIRIYGVSGNYDGCLNIYEEMKALGVKPNLVIYNRLIDSMG 326
Query: 155 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 214
RAKRPWQ K IYK++ NG +PNW+TYA+L+RAYGRARYG+D L++YREMKEKG+ L+V
Sbjct: 327 RAKRPWQAKIIYKDLITNGFTPNWSTYAALVRAYGRARYGDDALAIYREMKEKGLSLTVI 386
Query: 215 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 274
LYNTLL+MCAD Y DEAFEIF+DMK+ E C PDSWTFSS+IT+ +C G+VSEAEA +
Sbjct: 387 LYNTLLSMCADNRYVDEAFEIFQDMKNCETCDPDSWTFSSLITVYACSGRVSEAEAALLQ 446
Query: 275 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 334
M EAGFEP LFVLTS+IQCYGKA++ DDVVR +++ ELGITPDDRFCGCLLNVMTQTP
Sbjct: 447 MREAGFEPTLFVLTSVIQCYGKAKQVDDVVRTFDQVLELGITPDDRFCGCLLNVMTQTPS 506
Query: 335 EELGKLVECVEKSNSKLGYVVKLLLEEQDIE-GDFKKEATELFNSISKDVKKAYCNCLID 393
EE+GKL+ CVEK+ KLG VVK+L+EEQ+ E G FKKEA+EL +SI DVKKAY NCLID
Sbjct: 507 EEIGKLIGCVEKAKPKLGQVVKMLVEEQNCEEGVFKKEASELIDSIGSDVKKAYLNCLID 566
Query: 394 LCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSK 453
LCVNLN LE AC++L+LGL ++YT +QS+S TQWSLHLKSLSLGAALTALH+W+NDLS+
Sbjct: 567 LCVNLNKLERACEILQLGLEYDIYTGLQSKSATQWSLHLKSLSLGAALTALHVWMNDLSE 626
Query: 454 A-LESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKVGWFLTTEAA 512
A LESGEEFPPLLGINTGHGKHKYSDKGLA+VFESHLKELNAPFH++PDKVGWFLTT A
Sbjct: 627 AALESGEEFPPLLGINTGHGKHKYSDKGLAAVFESHLKELNAPFHEAPDKVGWFLTTSVA 686
Query: 513 AKSWLESRSSLVSVPA 528
AK+WLESR S V A
Sbjct: 687 AKAWLESRRSAGGVSA 702
|
|
| TAIR|locus:2142320 AT5G46580 "AT5G46580" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 900 (321.9 bits), Expect = 3.1e-90, P = 3.1e-90
Identities = 185/456 (40%), Positives = 282/456 (61%)
Query: 69 KTGSSPK--SYIWVNPKSPRASKLKEK-SYDTRARNEKWRIDPNAFSTLIKLYGTAGNFD 125
KTG P +Y + ++ K++E S RA W+ D AFS L K++G AG++D
Sbjct: 249 KTGLMPDEVTYSAILDVYSKSGKVEEVLSLYERAVATGWKPDAIAFSVLGKMFGEAGDYD 308
Query: 126 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 185
G V +EMK++ VKPN++ YN LL+ MGRA +P ++++ EM + GL+PN T +L+
Sbjct: 309 GIRYVLQEMKSMDVKPNVVVYNTLLEAMGRAGKPGLARSLFNEMLEAGLTPNEKTLTALV 368
Query: 186 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 245
+ YG+AR+ D L ++ EMK K + LYNTLL MCAD+G +EA +F DMK S C
Sbjct: 369 KIYGKARWARDALQLWEEMKAKKWPMDFILYNTLLNMCADIGLEEEAERLFNDMKESVQC 428
Query: 246 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 305
+PD++++++M+ I GK +A +F EML+AG + N+ T L+QC GKA+R DDVV
Sbjct: 429 RPDNFSYTAMLNIYGSGGKAEKAMELFEEMLKAGVQVNVMGCTCLVQCLGKAKRIDDVVY 488
Query: 306 ALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDI 364
+ + G+ PDDR CGCLL+VM E+ K++ C+E++N KL V L+++E+
Sbjct: 489 VFDLSIKRGVKPDDRLCGCLLSVMALCESSEDAEKVMACLERANKKLVTFVNLIVDEKTE 548
Query: 365 EGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRS 424
K+E + N+ + ++ +CNCLID+C N E A +LL LG +Y + +++
Sbjct: 549 YETVKEEFKLVINATQVEARRPFCNCLIDICRGNNRHERAHELLYLGTLFGLYPGLHNKT 608
Query: 425 PTQWSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASV 484
+WSL ++SLS+GAA TAL W+ L+ ++ EE P L TG G H++S +GLA+
Sbjct: 609 IKEWSLDVRSLSVGAAETALEEWMRTLANIIKRQEELPELFLAQTGTGTHRFS-QGLANS 667
Query: 485 FESHLKELNAPFHDSPDKVGWFLTTEAAAKSWLESR 520
F HL++L+APF S D+ G F+ T+ SWLES+
Sbjct: 668 FALHLQQLSAPFRQS-DRPGIFVATKEDLVSWLESK 702
|
|
| TAIR|locus:2027212 AT1G74750 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 343 (125.8 bits), Expect = 2.6e-28, P = 2.6e-28
Identities = 102/441 (23%), Positives = 201/441 (45%)
Query: 86 RASKLKEKSYDTRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 143
RA+ LKE + + + ++ +P+ + TLI ++ AG D +++Y+ M+ G+ P+
Sbjct: 406 RANYLKE-AMNVFNQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQEAGLSPDT 464
Query: 144 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 203
TY+ +++ +G+A ++ EM G +PN T+ ++ + +AR E L +YR+
Sbjct: 465 FTYSVIINCLGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALKLYRD 524
Query: 204 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 263
M+ G Q Y+ ++ + G+ +EA +F +M+ +N PD + ++ + G
Sbjct: 525 MQNAGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQR-KNWVPDEPVYGLLVDLWGKAG 583
Query: 264 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 323
V +A + ML+AG PN+ SL+ + + R + L + LG+ P +
Sbjct: 584 NVDKAWQWYQAMLQAGLRPNVPTCNSLLSTFLRVHRMSEAYNLLQSMLALGLHPSLQTYT 643
Query: 324 CLLNVMTQTPKE-ELGKLVECVEKSNSKLG-YVVKLLLEEQDIEG--DFKKEATELFNSI 379
LL+ T ++G + + S +++K+ D + D + +S
Sbjct: 644 LLLSCCTDARSNFDMGFCGQLMAVSGHPAHMFLLKMPPAGPDGQKVRDHVSNFLDFMHSE 703
Query: 380 SKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTD-IQSRSPTQWSLHLKSLSLG 438
++ K+ + ++D L E A + E+ VY D ++ +S + W ++L +S G
Sbjct: 704 DRESKRGLMDAVVDFLHKSGLKEEAGSVWEVAAGKNVYPDALREKSYSYWLINLHVMSEG 763
Query: 439 AALTALHIWINDLSKALESGEEFPPLLGINTGHGKH-KYSDKGLA-SVFESHLKELNAPF 496
A+ AL + K + + P + I TG G+ + + + E L N PF
Sbjct: 764 TAVIALSRTLAWFRKQMLVSGDCPSRIDIVTGWGRRSRVTGTSMVRQAVEELLNIFNFPF 823
Query: 497 HDSPDKVGWFLTTEAAAKSWL 517
G F+ + K+WL
Sbjct: 824 FTENGNSGCFVGSGEPLKNWL 844
|
|
| TAIR|locus:2061310 GUN1 "AT2G31400" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 292 (107.8 bits), Expect = 1.8e-22, Sum P(2) = 1.8e-22
Identities = 89/307 (28%), Positives = 149/307 (48%)
Query: 110 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW-QVKTIYKE 168
AFS LI YG +G + ++V+ MK G++PN++TYN ++D G+ + QV + E
Sbjct: 270 AFSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGMEFKQVAKFFDE 329
Query: 169 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVG 227
M NG+ P+ T+ SLL R E +++ EM + ++ V YNTLL A+C G
Sbjct: 330 MQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLDAICKG-G 388
Query: 228 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVL 287
D AFEI M + P+ ++S++I + G+ EA +F EM G +
Sbjct: 389 QMDLAFEILAQMPV-KRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSY 447
Query: 288 TSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEK 346
+L+ Y K R+++ + L + +GI D LL + K +E+ K+ +++
Sbjct: 448 NTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKR 507
Query: 347 SNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKA---YCNCLID-LCVNLNLLE 402
+ + L + +G KEA E+F +A + LID LC N L+
Sbjct: 508 EHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDALCKN-GLVG 566
Query: 403 NACKLLE 409
+A L++
Sbjct: 567 SAVSLID 573
|
|
| TAIR|locus:2054331 EMB2654 "EMBRYO DEFECTIVE 2654" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 324 (119.1 bits), Expect = 3.6e-26, P = 3.6e-26
Identities = 92/359 (25%), Positives = 171/359 (47%)
Query: 102 EKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 159
+KW P+A + LI +G AG + +N+ ++M + P+ TYNNL++ G +
Sbjct: 170 QKWSCKPDAETYDALINAHGRAGQWRWAMNLMDDMLRAAIAPSRSTYNNLINACGSSGNW 229
Query: 160 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 219
+ + K+MTDNG+ P+ T+ +L AY R LS + MK ++ T +N +
Sbjct: 230 REALEVCKKMTDNGVGPDLVTHNIVLSAYKSGRQYSKALSYFELMKGAKVRPDTTTFNII 289
Query: 220 LAMCADVGYTDEAFEIFEDMKSSE-NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA 278
+ + +G + +A ++F M+ C+PD TF+S++ + S +G++ A+F M+
Sbjct: 290 IYCLSKLGQSSQALDLFNSMREKRAECRPDVVTFTSIMHLYSVKGEIENCRAVFEAMVAE 349
Query: 279 GFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELG 338
G +PN+ +L+ Y + + L + + GI PD CLLN ++ +
Sbjct: 350 GLKPNIVSYNALMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTCLLNSYGRSRQPGKA 409
Query: 339 KLVECVEKSNSKLGYVV--KLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCV 396
K V + + + VV L++ G F EA E+F + +D K N ++ +C
Sbjct: 410 KEVFLMMRKERRKPNVVTYNALIDAYGSNG-FLAEAVEIFRQMEQDGIKP--N-VVSVCT 465
Query: 397 NLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKAL 455
L + K + + L QSR ++L + + +A+ + +I +L KA+
Sbjct: 466 LLAACSRSKKKVNVDTVLSA---AQSRG-----INLNTAAYNSAIGS-YINAAELEKAI 515
|
|
| TAIR|locus:2164910 EMB2745 "EMBRYO DEFECTIVE 2745" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 308 (113.5 bits), Expect = 4.5e-24, Sum P(2) = 4.5e-24
Identities = 95/322 (29%), Positives = 157/322 (48%)
Query: 86 RASKLKEKSYDTRARNEK-WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 144
R ++KE S+ N + + +D ++TLIK Y GNF L ++ EM G+ P++I
Sbjct: 287 REGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVI 346
Query: 145 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 204
TY +L+ +M +A + +M GL PN TY +L+ + + Y + V REM
Sbjct: 347 TYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREM 406
Query: 205 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG- 263
+ G SV YN L+ G ++A + EDMK + PD ++S++++ CR
Sbjct: 407 NDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKE-KGLSPDVVSYSTVLS-GFCRSY 464
Query: 264 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 323
V EA + EM+E G +P+ +SLIQ + + +RT + + +G+ PD+
Sbjct: 465 DVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYT 524
Query: 324 CLLNV--MTQTPKEELGKLVECVEKS--NSKLGYVVKLL-LEEQDIEGDFKKEATELF-- 376
L+N M ++ L E VEK + Y V + L +Q + K+ +LF
Sbjct: 525 ALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYE 584
Query: 377 NSISKDVKKAYCNCLIDLCVNL 398
S+ DV Y + LI+ C N+
Sbjct: 585 ESVPSDV--TY-HTLIENCSNI 603
|
|
| TAIR|locus:2077735 AT3G59040 "AT3G59040" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 294 (108.6 bits), Expect = 4.0e-23, P = 4.0e-23
Identities = 82/306 (26%), Positives = 148/306 (48%)
Query: 89 KLKEKSYDTRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 146
K E+ ++T +K + P+ + +I +Y AGN++ V+ M GV + +TY
Sbjct: 233 KEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGNYEKARKVFSSMVGKGVPQSTVTY 292
Query: 147 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 206
N+L+ K +V IY +M + + P+ +YA L++AYGRAR E+ LSV+ EM +
Sbjct: 293 NSLMSFETSYK---EVSKIYDQMQRSDIQPDVVSYALLIKAYGRARREEEALSVFEEMLD 349
Query: 207 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 266
G++ + YN LL A G ++A +F+ M+ + PD W++++M++ +
Sbjct: 350 AGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRR-DRIFPDLWSYTTMLSAYVNASDME 408
Query: 267 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 326
AE F + GFEPN+ +LI+ Y KA + ++ ++ GI + ++
Sbjct: 409 GAEKFFKRIKVDGFEPNIVTYGTLIKGYAKANDVEKMMEVYEKMRLSGIKANQTILTTIM 468
Query: 327 NVMTQTPK--EELG---KLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK 381
+ + LG ++ C + K V+ L QD E + KE T + N +
Sbjct: 469 DASGRCKNFGSALGWYKEMESCGVPPDQKAKNVLLSLASTQD-ELEEAKELTGIRNETAT 527
Query: 382 DVKKAY 387
+ + Y
Sbjct: 528 IIARVY 533
|
|
| TAIR|locus:2151281 AT5G02860 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 296 (109.3 bits), Expect = 5.2e-23, P = 5.2e-23
Identities = 67/225 (29%), Positives = 112/225 (49%)
Query: 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 166
D ++TLI V+EEMKA G + +TYN LLD G++ RP + +
Sbjct: 278 DAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVL 337
Query: 167 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 226
EM NG SP+ TY SL+ AY R ++ + + +M EKG + V Y TLL+
Sbjct: 338 NEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERA 397
Query: 227 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 286
G + A IFE+M+++ C+P+ TF++ I + RGK +E +F+E+ G P++
Sbjct: 398 GKVESAMSIFEEMRNA-GCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVT 456
Query: 287 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 331
+L+ +G+ +V + G P+ L++ ++
Sbjct: 457 WNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSR 501
|
|
| TAIR|locus:2044430 AT2G18940 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 295 (108.9 bits), Expect = 6.8e-23, P = 6.8e-23
Identities = 65/249 (26%), Positives = 125/249 (50%)
Query: 102 EKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ 161
+++ +D A++T++ Y G ++ ++++E MK +G P ++TYN +LD G+ R W+
Sbjct: 204 QEYLLDVRAYTTILHAYSRTGKYEKAIDLFERMKEMGPSPTLVTYNVILDVFGKMGRSWR 263
Query: 162 -VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 220
+ + EM GL + T +++L A R + + E+K G + YN LL
Sbjct: 264 KILGVLDEMRSKGLKFDEFTCSTVLSACAREGLLREAKEFFAELKSCGYEPGTVTYNALL 323
Query: 221 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 280
+ G EA + ++M+ + +C DS T++ ++ G EA + M + G
Sbjct: 324 QVFGKAGVYTEALSVLKEMEEN-SCPADSVTYNELVAAYVRAGFSKEAAGVIEMMTKKGV 382
Query: 281 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKE-ELGK 339
PN T++I YGKA + D+ ++ + E G P+ +L+++ + + E+ K
Sbjct: 383 MPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIK 442
Query: 340 LVECVEKSN 348
++ C KSN
Sbjct: 443 ML-CDMKSN 450
|
|
| TAIR|locus:2027166 PTAC2 "plastid transcriptionally active 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 277 (102.6 bits), Expect = 7.5e-21, P = 7.5e-21
Identities = 92/412 (22%), Positives = 187/412 (45%)
Query: 107 DPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 164
DP+A ++ LI+++G G F + ++ +M ++P+M TY ++ G+ +
Sbjct: 384 DPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARK 443
Query: 165 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 224
I + MT N + P+ Y ++ A+G+A E+ L + M E G S+ +++LL A
Sbjct: 444 ILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETFHSLLYSFA 503
Query: 225 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 284
G E+ I + S + TF++ I GK EA + +M ++ +P+
Sbjct: 504 RGGLVKESEAILSRLVDS-GIPRNRDTFNAQIEAYKQGGKFEEAVKTYVDMEKSRCDPDE 562
Query: 285 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCL-LNVMTQTPK-EELGKLVE 342
L +++ Y A+ D+ + I P C C+ L V +T + +++ +L+E
Sbjct: 563 RTLEAVLSVYSFARLVDECREQFEEMKASDILPSI-MCYCMMLAVYGKTERWDDVNELLE 621
Query: 343 CVEKSNSKLGYVVKLLLEEQDIEGDFKKEAT-ELFNSISKDVKKAYC-------NCLIDL 394
E ++++ + +++ Q I+GD+ ++ ++ + + C N L+D
Sbjct: 622 --EMLSNRVSNIHQVI--GQMIKGDYDDDSNWQIVEYVLDKLNSEGCGLGIRFYNALLDA 677
Query: 395 CVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKA 454
L E A ++L ++ ++ ++ WS+ + +S G TAL +W+ND++
Sbjct: 678 LWWLGQKERAARVLNEATKRGLFPELFRKNKLVWSVDVHRMSEGGMYTALSVWLNDINDM 737
Query: 455 LESGEEFPPLLGINTGHGKHKYSDKGLAS-VFESHLKELNAPFHDSPDKVGW 505
L G+ P L + + G+ + S S + ++ L S GW
Sbjct: 738 LLKGD-LPQLAVVVSVRGQLEKSSAARESPIAKAAFSFLQDHVSSSFSFTGW 788
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8GWE0 | PP314_ARATH | No assigned EC number | 0.7339 | 0.8123 | 0.6168 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 533 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 7e-15 | |
| smart00463 | 80 | smart00463, SMR, Small MutS-related domain | 9e-12 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-11 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-10 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-10 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-10 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-10 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-09 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-09 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 4e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-08 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-06 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-06 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 5e-05 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 8e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-04 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 7e-04 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 0.002 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 0.002 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.002 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.002 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.004 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 77.6 bits (191), Expect = 7e-15
Identities = 40/170 (23%), Positives = 84/170 (49%), Gaps = 1/170 (0%)
Query: 122 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 181
G++D L++Y++MK GVKP+ + ++ L+D G A + I ++ G+ +Y
Sbjct: 628 GDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSY 687
Query: 182 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 241
+SL+ A A+ + L +Y ++K ++ +V+ N L+ + +A E+ +MK
Sbjct: 688 SSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKR 747
Query: 242 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 291
C P++ T+S ++ + + ++ E G +PNL + +
Sbjct: 748 LGLC-PNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCIT 796
|
Length = 1060 |
| >gnl|CDD|214676 smart00463, SMR, Small MutS-related domain | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 9e-12
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
Query: 427 QWSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKY-SDKGLASVF 485
+WSL L L++ ALTAL ++N+ L I TG GKH G+
Sbjct: 1 KWSLDLHGLTVEEALTALDKFLNNARLKG-----LEQKLVIITGKGKHSLGGKSGVKPAL 55
Query: 486 ESHLKELNAPFH 497
+ HL+ + F
Sbjct: 56 KEHLRVESFRFA 67
|
Length = 80 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 2e-11
Identities = 51/221 (23%), Positives = 93/221 (42%), Gaps = 18/221 (8%)
Query: 99 ARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR 158
AR + ++ ++S+L+ A N+ L +YE++K+I ++P + T N L+ + +
Sbjct: 675 ARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQ 734
Query: 159 PWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNT 218
+ + EM GL PN TY+ LL A R + L + + KE G++ ++ +
Sbjct: 735 LPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRC 794
Query: 219 LLAMCADVGYTDEAF-EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 277
+ +C A E S + WT S + + + E +
Sbjct: 795 ITGLCLRRFEKACALGEPVVSFDSGRPQIENKWT-SWALMV-------------YRETIS 840
Query: 278 AGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 318
AG P + VL+ ++ C Q D + LGI+ D
Sbjct: 841 AGTLPTMEVLSQVLGCL---QLPHDATLRNRLIENLGISAD 878
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 2e-11
Identities = 47/227 (20%), Positives = 97/227 (42%), Gaps = 36/227 (15%)
Query: 111 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 170
F+ L+ + ++ + DG L V ++ G+K + Y L+ T ++ + + ++ EM
Sbjct: 440 FNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMV 499
Query: 171 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 230
+ G+ N +T+ +L+ RA Y M+ K ++ ++N L++ C G D
Sbjct: 500 NAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVD 559
Query: 231 EAFEIFEDMKS-SENCQPDSWTFSSMI-------------------------------TI 258
AF++ +MK+ + PD T +++ TI
Sbjct: 560 RAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTI 619
Query: 259 ----CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 301
CS +G A +++++M + G +P+ ++L+ G A D
Sbjct: 620 AVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLD 666
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 55.5 bits (135), Expect = 2e-10
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 212 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 256
VT YNTL+ G +EA ++F +MK +P+ +T+S +I
Sbjct: 3 VVT-YNTLIDGYCKKGKVEEALKLFNEMKKR-GIKPNVYTYSILI 45
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 62.6 bits (152), Expect = 3e-10
Identities = 60/290 (20%), Positives = 109/290 (37%), Gaps = 32/290 (11%)
Query: 44 RSVSLQETQSSNPTKHSQNPQYPHGKTGSSPKSYIWVNPKS------------PRASKLK 91
+S+ L E + S NP+ H S + P S PR +LK
Sbjct: 9 QSIRLDEIRDS-----LSNPRLLHSPRKFSLRGRRTKTPFSSISCSSVEQGLKPRP-RLK 62
Query: 92 --------EKSYDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG-VKPN 142
+S D R + + R + + I+ G L ++E ++A
Sbjct: 63 PEPIRIEVSESKDARLDDTQIRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLP 122
Query: 143 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 202
TY+ L++ K VK +Y + +G P+ +L + + D ++
Sbjct: 123 ASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFD 182
Query: 203 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 262
EM E+ ++ + T++ D G EAF +F +M + + TF M+ +
Sbjct: 183 EMPER----NLASWGTIIGGLVDAGNYREAFALFREM-WEDGSDAEPRTFVVMLRASAGL 237
Query: 263 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 312
G + + +L+ G + FV +LI Y K +D + +PE
Sbjct: 238 GSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE 287
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 3e-10
Identities = 50/217 (23%), Positives = 90/217 (41%), Gaps = 44/217 (20%)
Query: 130 VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA-- 187
+++EM N+ ++ ++ + A + +++EM ++G T+ +LRA
Sbjct: 180 LFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASA 235
Query: 188 -YGRARYG--------------------------------EDTLSVYREMKEKGMQLSVT 214
G AR G ED V+ M EK +
Sbjct: 236 GLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEK----TTV 291
Query: 215 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 274
+N++LA A GY++EA ++ +M+ S D +TFS MI I S + A+
Sbjct: 292 AWNSMLAGYALHGYSEEALCLYYEMRDS-GVSIDQFTFSIMIRIFSRLALLEHAKQAHAG 350
Query: 275 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 311
++ GF ++ T+L+ Y K R +D +R+P
Sbjct: 351 LIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP 387
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 62.6 bits (152), Expect = 4e-10
Identities = 43/163 (26%), Positives = 77/163 (47%), Gaps = 9/163 (5%)
Query: 174 LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 233
+P +T+ L+ ++ + L V R ++E G++ LY TL++ CA G D F
Sbjct: 433 RNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMF 492
Query: 234 EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQC 293
E+F +M ++ + + TF ++I C+ G+V++A + M +P+ V +LI
Sbjct: 493 EVFHEMVNAG-VEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISA 551
Query: 294 YGKAQRTDDVVRALNRLPELG-----ITPDDRFCGCLLNVMTQ 331
G ++ V RA + L E+ I PD G L+
Sbjct: 552 CG---QSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACAN 591
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 2e-09
Identities = 58/219 (26%), Positives = 87/219 (39%), Gaps = 27/219 (12%)
Query: 131 YEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS-----PNWNTYASLL 185
+ +M +KPN +T L R K I+ + G+ PN +LL
Sbjct: 478 FRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPN-----ALL 531
Query: 186 RAY---GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 242
Y GR Y + + + + V +N LL G A E+F M S
Sbjct: 532 DLYVRCGRMNYAWNQFNSHEK--------DVVSWNILLTGYVAHGKGSMAVELFNRMVES 583
Query: 243 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM-LEAGFEPNLFVLTSLIQCYGKAQRTD 301
PD TF S++ CS G V++ F+ M + PNL ++ G+A +
Sbjct: 584 GVN-PDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLT 642
Query: 302 DVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKL 340
+ +N++P ITPD G LLN ELG+L
Sbjct: 643 EAYNFINKMP---ITPDPAVWGALLNACRIHRHVELGEL 678
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 3e-09
Identities = 44/193 (22%), Positives = 85/193 (44%), Gaps = 11/193 (5%)
Query: 106 IDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA---KRPW 160
++ N F LI AG Y M++ VKP+ + +N L+ G++ R +
Sbjct: 503 VEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAF 562
Query: 161 QVKTIYKEMTDNG--LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNT 218
V EM + P+ T +L++A A + VY+ + E ++ + +Y
Sbjct: 563 DVLA---EMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTI 619
Query: 219 LLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA 278
+ C+ G D A I++DMK + +PD FS+++ + G + +A + + +
Sbjct: 620 AVNSCSQKGDWDFALSIYDDMK-KKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ 678
Query: 279 GFEPNLFVLTSLI 291
G + +SL+
Sbjct: 679 GIKLGTVSYSSLM 691
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 52.4 bits (127), Expect = 3e-09
Identities = 14/50 (28%), Positives = 27/50 (54%)
Query: 141 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 190
P+++TYN L+D + + + ++ EM G+ PN TY+ L+ +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 51.3 bits (124), Expect = 8e-09
Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 108 PN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 151
P+ ++TLI Y G + L ++ EMK G+KPN+ TY+ L+D
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILID 46
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 4e-08
Identities = 51/233 (21%), Positives = 94/233 (40%), Gaps = 9/233 (3%)
Query: 110 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 169
A+++++ Y G + L +Y EM+ GV + T++ ++ R K + +
Sbjct: 292 AWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGL 351
Query: 170 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 229
G + +L+ Y + ED +V+ M K ++ +N L+A + G
Sbjct: 352 IRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK----NLISWNALIAGYGNHGRG 407
Query: 230 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA-GFEPNLFVLT 288
+A E+FE M +E P+ TF ++++ C G + +F M E +P
Sbjct: 408 TKAVEMFERM-IAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYA 466
Query: 289 SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLV 341
+I+ G+ D+ + R P P LL ELG+L
Sbjct: 467 CMIELLGREGLLDEAYAMIRRAP---FKPTVNMWAALLTACRIHKNLELGRLA 516
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 48.9 bits (118), Expect = 5e-08
Identities = 19/50 (38%), Positives = 30/50 (60%)
Query: 247 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 296
PD T++++I +GKV EA +FNEM + G +PN++ + LI K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 1e-06
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 251 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 283
T++++I G+V EA +F EM E G EP+
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 2e-06
Identities = 49/216 (22%), Positives = 93/216 (43%), Gaps = 12/216 (5%)
Query: 102 EKWRI-----DPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 154
W + + + FS L+ Y AG FD L +Y M GV+P++ T+ +L T G
Sbjct: 139 HAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCG 198
Query: 155 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 214
+ + ++ + G + + +L+ Y + G D +S R + ++ +
Sbjct: 199 GIPDLARGREVHAHVVRFGFELDVDVVNALITMY--VKCG-DVVSA-RLVFDRMPRRDCI 254
Query: 215 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 274
+N +++ + G E E+F M+ PD T +S+I+ C G M
Sbjct: 255 SWNAMISGYFENGECLEGLELFFTMRELS-VDPDLMTITSVISACELLGDERLGREMHGY 313
Query: 275 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 310
+++ GF ++ V SLIQ Y + + +R+
Sbjct: 314 VVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRM 349
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 4e-06
Identities = 39/193 (20%), Positives = 82/193 (42%), Gaps = 21/193 (10%)
Query: 128 LNVYEEMKAIGVKPNMITYNNLL--------DTMGRAKRPWQVKTIYKEMTDNGLSPNWN 179
L ++ M+ + V P+++T +++ + +GR + VKT G + + +
Sbjct: 273 LELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKT--------GFAVDVS 324
Query: 180 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 239
SL++ Y + V+ M+ K + +++ G D+A E + M
Sbjct: 325 VCNSLIQMYLSLGSWGEAEKVFSRMETK----DAVSWTAMISGYEKNGLPDKALETYALM 380
Query: 240 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 299
+ +N PD T +S+++ C+C G + + G + V +LI+ Y K +
Sbjct: 381 EQ-DNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKC 439
Query: 300 TDDVVRALNRLPE 312
D + + +PE
Sbjct: 440 IDKALEVFHNIPE 452
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 5e-05
Identities = 13/46 (28%), Positives = 26/46 (56%)
Query: 180 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 225
TY +L+ Y + E+ L ++ EMK++G++ +V Y+ L+
Sbjct: 5 TYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 5e-05
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 251 TFSSMITICSCRGKVSEAEAMFNEMLEAGF 280
T++S+I+ GK+ EA +F EM E G
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 8e-05
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 111 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 141
++ L+ AG+ D L V EEMKA G+KP
Sbjct: 4 YNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 2e-04
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 180 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 213
TY +L+ +A E+ L +++EMKE+G++ V
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 2e-04
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 216 YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 249
YNTL+ G +EA E+F++MK +PD
Sbjct: 3 YNTLIDGLCKAGRVEEALELFKEMKER-GIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 3e-04
Identities = 34/166 (20%), Positives = 73/166 (43%), Gaps = 4/166 (2%)
Query: 106 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 165
ID FS +I+++ + + + G +++ L+D + R + +
Sbjct: 323 IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNV 382
Query: 166 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 225
+ M L +WN +L+ YG G + ++ M +G+ + + +L+ C
Sbjct: 383 FDRMPRKNLI-SWN---ALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRY 438
Query: 226 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 271
G +++ +EIF+ M + +P + ++ MI + G + EA AM
Sbjct: 439 SGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAM 484
|
Length = 697 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 36.9 bits (87), Expect = 7e-04
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 244 NCQPDSWTFSSMITICSCR-GKVSEAEAMFNEM 275
+PD T++++I CR G+V EA + +EM
Sbjct: 2 GLKPDVVTYNTLID-GLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.002
Identities = 47/192 (24%), Positives = 81/192 (42%), Gaps = 26/192 (13%)
Query: 106 IDPNAFSTLIKLYGTAGNFDGCLNVYEEM--KAIGVKPNMIT---YNNLLDTMGRAKRPW 160
+D + ++LI++Y + G++ V+ M K MI+ N L P
Sbjct: 321 VDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGL---------PD 371
Query: 161 QVKTIYKEMTDNGLSPNWNTYASLLRA---YGRARYGEDTLSVYREMKEKGMQLSVTLYN 217
+ Y M + +SP+ T AS+L A G G + ++ + KG+ V + N
Sbjct: 372 KALETYALMEQDNVSPDEITIASVLSACACLGDLDVG---VKLHELAERKGLISYVVVAN 428
Query: 218 TLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 277
L+ M + D+A E+F ++ + SWT S+I + EA F +ML
Sbjct: 429 ALIEMYSKCKCIDKALEVFHNIPEKDVI---SWT--SIIAGLRLNNRCFEALIFFRQML- 482
Query: 278 AGFEPNLFVLTS 289
+PN L +
Sbjct: 483 LTLKPNSVTLIA 494
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.002
Identities = 47/235 (20%), Positives = 102/235 (43%), Gaps = 23/235 (9%)
Query: 112 STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD 171
+ LI++Y D L V+ + + ++I++ +++ + R ++ +++M
Sbjct: 428 NALIEMYSKCKCIDKALEVFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL 483
Query: 172 NGLSPNWNTYASLLRAYGRA---RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 228
L PN T + L A R G++ ++ + G+ L N LL + G
Sbjct: 484 T-LKPNSVTLIAALSACARIGALMCGKE---IHAHVLRTGIGFDGFLPNALLDLYVRCGR 539
Query: 229 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 288
+ A+ F + + D +++ ++T GK S A +FN M+E+G P+
Sbjct: 540 MNYAWNQFN------SHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFI 593
Query: 289 SLIQCYGKAQRTDDVVRALNRL-PELGITPDDRFCGCLLNVMTQTPKEELGKLVE 342
SL+ ++ + + + + ITP+ + C+++++ + GKL E
Sbjct: 594 SLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRA-----GKLTE 643
|
Length = 857 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.002
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 216 YNTLLAMCADVGYTDEAFEIFEDMKSS 242
YN+L++ G +EA E+F++MK
Sbjct: 3 YNSLISGYCKAGKLEEALELFKEMKEK 29
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 35.6 bits (83), Expect = 0.002
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 143 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP 176
+ TYN LL + +A P + +EM +GL P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 35.2 bits (82), Expect = 0.002
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 213 VTLYNTLLAMCADVGYTDEAFEIFEDMKSS 242
+ YN LL A G D A + E+MK+S
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKAS 30
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 34.4 bits (80), Expect = 0.004
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 180 TYASLLRAYGRARYGEDTLSVYREMKEKGM 209
TY SL+ Y +A E+ L +++EMKEKG+
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 533 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.87 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.85 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.83 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.8 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.76 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.73 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.71 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.65 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.65 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.63 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.61 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.56 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.54 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.54 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.52 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.52 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.5 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.5 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.5 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.45 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.43 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.42 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.41 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.41 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.4 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.38 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.37 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.36 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.36 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.33 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.32 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.27 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.26 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.26 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.26 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.23 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.22 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.21 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.21 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.19 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.15 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.11 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.06 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.03 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.03 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.01 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.01 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 98.97 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 98.97 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.97 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 98.96 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 98.95 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 98.93 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.92 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.9 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 98.88 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 98.86 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 98.85 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.84 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.84 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.81 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.79 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.74 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 98.73 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.71 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.71 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 98.68 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.63 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.62 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 98.6 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.6 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 98.59 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.55 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.53 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.53 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.47 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.39 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.37 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.36 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.36 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.33 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.33 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.33 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.3 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.27 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.27 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.26 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.23 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.22 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.22 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.22 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.19 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.17 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.15 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.13 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.12 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.11 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.11 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.1 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.08 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.08 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.07 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.06 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.06 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.04 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.04 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.02 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.02 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.02 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 97.99 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.99 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.99 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 97.99 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.96 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.94 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.93 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 97.92 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 97.92 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.91 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 97.91 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.91 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.89 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.89 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 97.87 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.87 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.84 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.83 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 97.82 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.8 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.8 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.8 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 97.79 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 97.75 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 97.72 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.72 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.72 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.71 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.7 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.69 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.64 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.53 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 97.51 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 97.51 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.5 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.48 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.47 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.46 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.44 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.4 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.37 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.3 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.22 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.22 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 97.2 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.18 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.13 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.08 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.03 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.02 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.02 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.98 | |
| smart00463 | 80 | SMR Small MutS-related domain. | 96.96 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 96.94 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.9 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 96.86 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.86 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 96.82 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.75 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.74 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.71 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.7 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.7 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 96.68 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 96.66 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.59 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.57 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.56 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.51 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 96.5 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.44 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 96.4 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 96.36 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.31 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 96.25 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.25 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.22 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.19 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.15 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.15 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.11 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.07 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.01 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 96.0 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 95.97 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 95.91 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.9 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 95.73 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 95.71 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 95.69 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 95.68 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.65 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.63 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 95.62 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 95.55 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 95.46 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 95.45 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.43 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.39 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 95.27 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 95.27 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.19 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 95.15 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.15 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 95.05 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 95.03 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.93 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 94.72 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 94.69 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 94.57 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 94.24 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.21 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.15 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 94.14 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 94.07 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 94.01 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.97 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 93.96 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 93.96 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 93.78 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 93.47 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 93.44 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 93.32 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 93.29 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 93.26 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 93.21 | |
| PF01713 | 83 | Smr: Smr domain; InterPro: IPR002625 This family i | 93.02 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 92.82 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 92.79 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 92.79 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 92.75 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 92.51 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 92.45 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 92.17 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 92.17 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 92.16 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 92.15 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 91.81 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 91.8 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 91.68 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 91.16 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 91.01 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 90.8 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 90.38 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 90.37 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 90.18 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 90.11 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 90.03 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 89.9 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 89.8 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 89.69 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 89.54 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 89.42 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 89.37 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 89.35 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 89.17 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 89.09 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 89.05 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 87.82 | |
| PRK09687 | 280 | putative lyase; Provisional | 87.74 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 87.56 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 87.26 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 87.21 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 86.17 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 85.51 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 85.5 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 85.22 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 85.16 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 85.16 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 85.11 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 84.97 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 84.86 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 83.99 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 83.68 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 83.4 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 83.27 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 83.18 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 83.1 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 83.09 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 82.66 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 82.34 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 82.18 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 81.36 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 80.77 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 80.33 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 80.3 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-60 Score=514.06 Aligned_cols=427 Identities=18% Similarity=0.278 Sum_probs=349.5
Q ss_pred HHhhHHHHHhhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 009506 91 KEKSYDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 170 (533)
Q Consensus 91 ~~~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~ 170 (533)
.+.+++..|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.|++++|.++|++|.
T Consensus 455 ~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~ 534 (1060)
T PLN03218 455 GALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMR 534 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH--cCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC
Q 009506 171 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE--KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD 248 (533)
Q Consensus 171 ~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~--~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~ 248 (533)
+.|+.||..+|+.||.+|++.|++++|.++|++|.+ .|+.||..+|++||.+|++.|++++|.++|++|.+.|. .|+
T Consensus 535 ~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi-~p~ 613 (1060)
T PLN03218 535 SKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNI-KGT 613 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCC
Confidence 999999999999999999999999999999999876 57888888898888888888888888888888888885 888
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 009506 249 SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV 328 (533)
Q Consensus 249 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 328 (533)
..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.||.+
T Consensus 614 ~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~a 693 (1060)
T PLN03218 614 PEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGA 693 (1060)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HhcCCh-HHHHHHHHHHHhcCCChhHHH-HHHHHhhhhhccHHHHHHHHHhhhcc---CccchhhHHHHHHHHhcCCHHH
Q 009506 329 MTQTPK-EELGKLVECVEKSNSKLGYVV-KLLLEEQDIEGDFKKEATELFNSISK---DVKKAYCNCLIDLCVNLNLLEN 403 (533)
Q Consensus 329 ~~~~~~-~~a~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~~a~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~ 403 (533)
|++.|+ ++|.++|+.|...+...+... +.++.+|++.|+. ++|.++|++|.. .||..+|++||.+|++.|++++
T Consensus 694 y~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~-eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~ 772 (1060)
T PLN03218 694 CSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQL-PKALEVLSEMKRLGLCPNTITYSILLVASERKDDADV 772 (1060)
T ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHH
Confidence 888888 888888887776554444443 7777777777765 777777776643 3566666666666666665555
Q ss_pred HHHHHHHHHhc---------------------------------------------------------------------
Q 009506 404 ACKLLELGLTL--------------------------------------------------------------------- 414 (533)
Q Consensus 404 A~~l~~~m~~~--------------------------------------------------------------------- 414 (533)
|.++|++|.+.
T Consensus 773 A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~ 852 (1060)
T PLN03218 773 GLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQ 852 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHH
Confidence 44444444333
Q ss_pred ---------------------------------------------------------cccCCccccCccceeecccccCh
Q 009506 415 ---------------------------------------------------------EVYTDIQSRSPTQWSLHLKSLSL 437 (533)
Q Consensus 415 ---------------------------------------------------------g~~~~~~~~~~~~~~~~l~~~~~ 437 (533)
|+.|+....+. .|.++++.++.
T Consensus 853 vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~~~~A~~l~~em~~~Gi~p~~~~~~~-~~~~d~~~~~~ 931 (1060)
T PLN03218 853 VLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEYDPRAFSLLEEAASLGVVPSVSFKKS-PIVIDAEELPV 931 (1060)
T ss_pred HHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccChHHHHHHHHHHHHcCCCCCcccccC-ceEEEcccCcc
Confidence 33333322222 69999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCCCCceEEEeeeccccccchh---------HHHHHHHHhhhcCCCCCCCCCCcceEEE
Q 009506 438 GAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKG---------LASVFESHLKELNAPFHDSPDKVGWFLT 508 (533)
Q Consensus 438 g~~~~a~~~~~~~l~~~~~~g~~~p~~~~i~~~~~~~~~~~~~---------l~~~~~~~L~~~~~~f~~~~~~~g~~~~ 508 (533)
|++.+++..|++.+..++..|.++|....++-.-+++.+..+| +++++..+|++++.||+.++++ ||+..
T Consensus 932 ~aa~~~l~~wl~~~~~~~~~g~~lp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-g~~~~ 1010 (1060)
T PLN03218 932 FAAEVYLLTILKGLKHRLAAGAKLPNVTILLPTEKKEIYTPKGEKTINLAGRVGQAVAALLRRLGLPYQGSESH-GKLRI 1010 (1060)
T ss_pred hhHHHHHHHHHHHHHHHHhccCcCCcceeeeccccceeeccCCchhHHHHHHHHHHHHHHHHHhCCCCCCCCCC-CeEEe
Confidence 9999999999999999999999999988733335555555445 8999999999999999999988 99999
Q ss_pred eHHHHHHHhhcCC
Q 009506 509 TEAAAKSWLESRS 521 (533)
Q Consensus 509 ~~~~l~~wl~~~~ 521 (533)
++.++++||+.+.
T Consensus 1011 ~~~~~~~wl~~~~ 1023 (1060)
T PLN03218 1011 NGLSLRRWFQPKL 1023 (1060)
T ss_pred ccHHHHHHhcccC
Confidence 9999999999875
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-51 Score=444.63 Aligned_cols=335 Identities=21% Similarity=0.357 Sum_probs=319.0
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009506 106 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 185 (533)
Q Consensus 106 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 185 (533)
||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.|++++|.++|++|.+.|+.||..||++||
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI 514 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALI 514 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCCCCHHHHHHHHHHHHhcC
Q 009506 186 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS--SENCQPDSWTFSSMITICSCRG 263 (533)
Q Consensus 186 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~p~~~~~~~li~~~~~~g 263 (533)
.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.. .|. .||.++|++||.+|++.|
T Consensus 515 ~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi-~PD~vTynaLI~ay~k~G 593 (1060)
T PLN03218 515 DGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPI-DPDHITVGALMKACANAG 593 (1060)
T ss_pred HHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCC-CCcHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999999999999986 454 999999999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHH
Q 009506 264 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVE 342 (533)
Q Consensus 264 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~ 342 (533)
++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+ ++|.++++
T Consensus 594 ~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~ 673 (1060)
T PLN03218 594 QVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQ 673 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHhcCCChhHHH-HHHHHhhhhhccHHHHHHHHHhhhcc---CccchhhHHHHHHHHhcCCHHHHHHHHHHHHhccccC
Q 009506 343 CVEKSNSKLGYVV-KLLLEEQDIEGDFKKEATELFNSISK---DVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYT 418 (533)
Q Consensus 343 ~~~~~~~~~~~~~-~~l~~~~~~~g~~~~~a~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~ 418 (533)
.|.+.+...+... +.|+.+|+++|++ ++|.++|+.|.. .|+..+||+||.+|++.|++++|+++|++|...|+.|
T Consensus 674 eM~k~G~~pd~~tynsLI~ay~k~G~~-eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~P 752 (1060)
T PLN03218 674 DARKQGIKLGTVSYSSLMGACSNAKNW-KKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCP 752 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 9999987777666 9999999999987 999999999863 6799999999999999999999999999999999999
Q ss_pred CccccCccceeecccccCh-hhHHHHHHHH
Q 009506 419 DIQSRSPTQWSLHLKSLSL-GAALTALHIW 447 (533)
Q Consensus 419 ~~~~~~~~~~~~~l~~~~~-g~~~~a~~~~ 447 (533)
|..+ |+.++.++.. |....|...+
T Consensus 753 d~~T-----y~sLL~a~~k~G~le~A~~l~ 777 (1060)
T PLN03218 753 NTIT-----YSILLVASERKDDADVGLDLL 777 (1060)
T ss_pred CHHH-----HHHHHHHHHHCCCHHHHHHHH
Confidence 9877 5667777776 7777777665
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-50 Score=431.49 Aligned_cols=342 Identities=14% Similarity=0.205 Sum_probs=271.7
Q ss_pred hHHhhHHHHHhhcC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 009506 90 LKEKSYDTRARNEK-WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 168 (533)
Q Consensus 90 ~~~~~l~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~ 168 (533)
..+..++..|...+ +.||..+|+.++.+|++.++++.|.+++..|.+.|+.||..+||.||.+|++.|++++|.++|++
T Consensus 104 ~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~ 183 (697)
T PLN03081 104 REALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDE 183 (697)
T ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhc
Confidence 35677777777654 67888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC
Q 009506 169 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD 248 (533)
Q Consensus 169 m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~ 248 (533)
|. .||..+||++|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|..+.+.+++..+.+.|. .||
T Consensus 184 m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~-~~d 258 (697)
T PLN03081 184 MP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGV-VGD 258 (697)
T ss_pred CC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCC-Ccc
Confidence 85 3788888888888888888888888888888888888888888888888888888888888888888775 788
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 009506 249 SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV 328 (533)
Q Consensus 249 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 328 (533)
..+|++||++|++.|++++|.++|++|.+ +|.++||.||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+
T Consensus 259 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a 334 (697)
T PLN03081 259 TFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRI 334 (697)
T ss_pred ceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 88888888888888888888888888754 67888888888888888888888888888888888888888888888
Q ss_pred HhcCCh-HHHHHHHHHHHhcCCChhHHH-HHHHHhhhhhccHHHHHHHHHhhhccCccchhhHHHHHHHHhcCCHHHHHH
Q 009506 329 MTQTPK-EELGKLVECVEKSNSKLGYVV-KLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACK 406 (533)
Q Consensus 329 ~~~~~~-~~a~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 406 (533)
|++.|. +++.++++.|.+.+...+..+ +.|+.+|+++|++ ++|.++|++|.. +|..+||+||.+|+++|+.++|++
T Consensus 335 ~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~-~~A~~vf~~m~~-~d~~t~n~lI~~y~~~G~~~~A~~ 412 (697)
T PLN03081 335 FSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRM-EDARNVFDRMPR-KNLISWNALIAGYGNHGRGTKAVE 412 (697)
T ss_pred HHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCH-HHHHHHHHhCCC-CCeeeHHHHHHHHHHcCCHHHHHH
Confidence 888888 888888888888776665554 7888888888876 888888888765 577788888888888888888888
Q ss_pred HHHHHHhccccCCccccCccceeecccccCh-hhHHHHHHHH
Q 009506 407 LLELGLTLEVYTDIQSRSPTQWSLHLKSLSL-GAALTALHIW 447 (533)
Q Consensus 407 l~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~-g~~~~a~~~~ 447 (533)
+|++|.+.|+.||..| |+.++.+++. |...++...+
T Consensus 413 lf~~M~~~g~~Pd~~T-----~~~ll~a~~~~g~~~~a~~~f 449 (697)
T PLN03081 413 MFERMIAEGVAPNHVT-----FLAVLSACRYSGLSEQGWEIF 449 (697)
T ss_pred HHHHHHHhCCCCCHHH-----HHHHHHHHhcCCcHHHHHHHH
Confidence 8888888888887666 4445555555 5555554444
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-50 Score=442.39 Aligned_cols=393 Identities=16% Similarity=0.198 Sum_probs=317.6
Q ss_pred HHhhHHHHHhhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 009506 91 KEKSYDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 170 (533)
Q Consensus 91 ~~~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~ 170 (533)
.++++|..+.+.|+.||+.+||+||.+|+++|++++|.++|++|.+ ||.++||+||.+|++.|++++|+++|++|.
T Consensus 205 ~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~ 280 (857)
T PLN03077 205 RGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMR 280 (857)
T ss_pred hHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 4567777777777777888888999999999999999999999964 788999999999999999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHH
Q 009506 171 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 250 (533)
Q Consensus 171 ~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~ 250 (533)
+.|+.||..||+.+|.+|++.|+++.|.+++..|.+.|+.||..+||+||.+|++.|++++|.++|++|. .||.+
T Consensus 281 ~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-----~~d~~ 355 (857)
T PLN03077 281 ELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME-----TKDAV 355 (857)
T ss_pred HcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC-----CCCee
Confidence 9999999999999999999999999999999999999999999999999999999999999988888886 57788
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHh
Q 009506 251 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 330 (533)
Q Consensus 251 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 330 (533)
+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++++.|.+.|+.|+..+++.|+.+|+
T Consensus 356 s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~ 435 (857)
T PLN03077 356 SWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYS 435 (857)
T ss_pred eHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888777777777777777777777777777777777777
Q ss_pred cCCh-HHHHHHHHHHHhc--------------------------------------------------------------
Q 009506 331 QTPK-EELGKLVECVEKS-------------------------------------------------------------- 347 (533)
Q Consensus 331 ~~~~-~~a~~~~~~~~~~-------------------------------------------------------------- 347 (533)
+.|+ ++|.++|+.|.+.
T Consensus 436 k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~ 515 (857)
T PLN03077 436 KCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHV 515 (857)
T ss_pred HcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHH
Confidence 7777 7777666654332
Q ss_pred ---CCChhHHH-HHHHHhhhhhccHHHHHHHHHhhhccCccchhhHHHHHHHHhcCCHHHHHHHHHHHHhccccCCcccc
Q 009506 348 ---NSKLGYVV-KLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSR 423 (533)
Q Consensus 348 ---~~~~~~~~-~~l~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~ 423 (533)
+...+..+ +.|+++|.++|++ ++|+++|+.+ .+|..+||+||.+|+++|+.++|+++|++|.+.|+.||..|
T Consensus 516 ~~~g~~~~~~~~naLi~~y~k~G~~-~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T- 591 (857)
T PLN03077 516 LRTGIGFDGFLPNALLDLYVRCGRM-NYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVT- 591 (857)
T ss_pred HHhCCCccceechHHHHHHHHcCCH-HHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCccc-
Confidence 22222222 5677899999987 9999999998 67999999999999999999999999999999999999877
Q ss_pred CccceeecccccCh-hhHHHHHHHHHHHH-------------------------HHHHHcCCCC---CC---ceEEEeee
Q 009506 424 SPTQWSLHLKSLSL-GAALTALHIWINDL-------------------------SKALESGEEF---PP---LLGINTGH 471 (533)
Q Consensus 424 ~~~~~~~~l~~~~~-g~~~~a~~~~~~~l-------------------------~~~~~~g~~~---p~---~~~i~~~~ 471 (533)
|+.++.+++. |...++...+..+. +++.+..+.+ |+ |.+++.+|
T Consensus 592 ----~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac 667 (857)
T PLN03077 592 ----FISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNAC 667 (857)
T ss_pred ----HHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHH
Confidence 4556666666 66666665554332 2232222233 33 44566678
Q ss_pred ccccccchhHHHHHHHHhhhcCCCCCCCCCCcceEEE
Q 009506 472 GKHKYSDKGLASVFESHLKELNAPFHDSPDKVGWFLT 508 (533)
Q Consensus 472 ~~~~~~~~~l~~~~~~~L~~~~~~f~~~~~~~g~~~~ 508 (533)
..|+.. ++++.+.+.|.+++ |++.|+++.
T Consensus 668 ~~~~~~--e~~e~~a~~l~~l~------p~~~~~y~l 696 (857)
T PLN03077 668 RIHRHV--ELGELAAQHIFELD------PNSVGYYIL 696 (857)
T ss_pred HHcCCh--HHHHHHHHHHHhhC------CCCcchHHH
Confidence 888865 78888888888887 888888874
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-48 Score=417.45 Aligned_cols=367 Identities=16% Similarity=0.220 Sum_probs=268.1
Q ss_pred HHhhHHHHHhhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 009506 91 KEKSYDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 170 (533)
Q Consensus 91 ~~~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~ 170 (533)
.++++|..|.+.|+.||..+||.||++|++.|++++|.++|++|.+ ||..+||++|.+|++.|++++|+++|++|.
T Consensus 141 ~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~ 216 (697)
T PLN03081 141 CVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMW 216 (697)
T ss_pred HHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999999999999964 888999999999999999999999999987
Q ss_pred HCCCCCCHH-----------------------------------HHHHHHHHHHhcCChHH-------------------
Q 009506 171 DNGLSPNWN-----------------------------------TYASLLRAYGRARYGED------------------- 196 (533)
Q Consensus 171 ~~g~~p~~~-----------------------------------~~~~ll~~~~~~g~~~~------------------- 196 (533)
+.|+.||.. +||+||++|+++|++++
T Consensus 217 ~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~l 296 (697)
T PLN03081 217 EDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSM 296 (697)
T ss_pred HhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHH
Confidence 766655433 23444445555555544
Q ss_pred ------------HHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC
Q 009506 197 ------------TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 264 (533)
Q Consensus 197 ------------a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 264 (533)
|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++++.|.+.|. .||..+|++||++|+++|+
T Consensus 297 i~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~-~~d~~~~~~Li~~y~k~G~ 375 (697)
T PLN03081 297 LAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGF-PLDIVANTALVDLYSKWGR 375 (697)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCC-CCCeeehHHHHHHHHHCCC
Confidence 444555555555555555555555555555555555555555555553 5555555555556666666
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHH
Q 009506 265 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVEC 343 (533)
Q Consensus 265 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~ 343 (533)
+++|.++|++|.+ ||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||+.+|.+|++.|. +++.++|+.
T Consensus 376 ~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~ 451 (697)
T PLN03081 376 MEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQS 451 (697)
T ss_pred HHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 6666666665543 67778888888888888888888888888888999999999999999999998 889999998
Q ss_pred HHh-cCCChhH-HHHHHHHhhhhhccHHHHHHHHHhhhccCccchhhHHHHHHHHhcCCHHHHHHHHHHHHhccccCCcc
Q 009506 344 VEK-SNSKLGY-VVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQ 421 (533)
Q Consensus 344 ~~~-~~~~~~~-~~~~l~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~ 421 (533)
|.+ .+...+. ..+.+++.|.+.|.+ ++|.++|+++...|+..+|++|+.+|..+|+++.|..+++++.+. .|+
T Consensus 452 m~~~~g~~p~~~~y~~li~~l~r~G~~-~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~--~p~-- 526 (697)
T PLN03081 452 MSENHRIKPRAMHYACMIELLGREGLL-DEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGM--GPE-- 526 (697)
T ss_pred HHHhcCCCCCccchHhHHHHHHhcCCH-HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC--CCC--
Confidence 875 3444433 337788888888876 899999999888888889999999999999999999998888543 343
Q ss_pred ccCccceeecccccCh-hhHHHHHHHHHHHHHHHHHcC-CCCCCceEEEeeecccccc
Q 009506 422 SRSPTQWSLHLKSLSL-GAALTALHIWINDLSKALESG-EEFPPLLGINTGHGKHKYS 477 (533)
Q Consensus 422 ~~~~~~~~~~l~~~~~-g~~~~a~~~~~~~l~~~~~~g-~~~p~~~~i~~~~~~~~~~ 477 (533)
+...|..++..++. |...+|...+ +++.+.| ...|.+.+|..+-..|.++
T Consensus 527 --~~~~y~~L~~~y~~~G~~~~A~~v~----~~m~~~g~~k~~g~s~i~~~~~~~~f~ 578 (697)
T PLN03081 527 --KLNNYVVLLNLYNSSGRQAEAAKVV----ETLKRKGLSMHPACTWIEVKKQDHSFF 578 (697)
T ss_pred --CCcchHHHHHHHHhCCCHHHHHHHH----HHHHHcCCccCCCeeEEEECCeEEEEc
Confidence 23356778888877 8888888776 3444555 4556665555544445443
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-47 Score=417.21 Aligned_cols=370 Identities=16% Similarity=0.173 Sum_probs=303.8
Q ss_pred HHhhHHHHHhhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 009506 91 KEKSYDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 170 (533)
Q Consensus 91 ~~~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~ 170 (533)
.+..++.+|...|+.||..+|+++|++|++.++++.+.+++..|.+.|+.||..+||+||.+|++.|++++|.++|++|.
T Consensus 170 ~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~ 249 (857)
T PLN03077 170 EALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP 249 (857)
T ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC
Confidence 45566666666666666666666666666666666666666666666666666677777777788888888888888875
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHH
Q 009506 171 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 250 (533)
Q Consensus 171 ~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~ 250 (533)
.||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.|+.+.|.+++..|.+.|. .||..
T Consensus 250 ----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~-~~d~~ 324 (857)
T PLN03077 250 ----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGF-AVDVS 324 (857)
T ss_pred ----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCC-ccchH
Confidence 3677888888888888888888888888888888888888999999888888888888888888888886 88999
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHh
Q 009506 251 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 330 (533)
Q Consensus 251 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 330 (533)
+|++||.+|++.|++++|.++|++|.+ ||..+|+.||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+
T Consensus 325 ~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~ 400 (857)
T PLN03077 325 VCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACA 400 (857)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHh
Confidence 999999999999999999999999864 7889999999999999999999999999999999999999999999999
Q ss_pred cCCh-HHHHHHHHHHHhcCCChhHHH-HHHHHhhhhhccHHHHHHHHHhhhccCccchhhHHHHHHHHhcCCHHHHHHHH
Q 009506 331 QTPK-EELGKLVECVEKSNSKLGYVV-KLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLL 408 (533)
Q Consensus 331 ~~~~-~~a~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 408 (533)
+.|+ +++.++++.+.+.+...+..+ +.|+.+|.++|++ ++|.++|++|.. +|..+||++|.+|++.|+.++|+++|
T Consensus 401 ~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~-~~A~~vf~~m~~-~d~vs~~~mi~~~~~~g~~~eA~~lf 478 (857)
T PLN03077 401 CLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCI-DKALEVFHNIPE-KDVISWTSIIAGLRLNNRCFEALIFF 478 (857)
T ss_pred ccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCH-HHHHHHHHhCCC-CCeeeHHHHHHHHHHCCCHHHHHHHH
Confidence 9999 999999999999988877766 9999999999987 999999999986 58899999999999999999999999
Q ss_pred HHHHhccccCCcccc------------------------------------------------------------Cccce
Q 009506 409 ELGLTLEVYTDIQSR------------------------------------------------------------SPTQW 428 (533)
Q Consensus 409 ~~m~~~g~~~~~~~~------------------------------------------------------------~~~~~ 428 (533)
++|.. ++.||..++ +..+|
T Consensus 479 ~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~ 557 (857)
T PLN03077 479 RQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSW 557 (857)
T ss_pred HHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhH
Confidence 99975 577776543 44568
Q ss_pred eecccccCh-hhHHHHHHHHHHHHHHHHHcCCCCCCce---EEEeeecccccc
Q 009506 429 SLHLKSLSL-GAALTALHIWINDLSKALESGEEFPPLL---GINTGHGKHKYS 477 (533)
Q Consensus 429 ~~~l~~~~~-g~~~~a~~~~~~~l~~~~~~g~~~p~~~---~i~~~~~~~~~~ 477 (533)
+.++.++.. |...+|+..+. ++.+.| ..|+.+ .++.+|.+.+.+
T Consensus 558 n~lI~~~~~~G~~~~A~~lf~----~M~~~g-~~Pd~~T~~~ll~a~~~~g~v 605 (857)
T PLN03077 558 NILLTGYVAHGKGSMAVELFN----RMVESG-VNPDEVTFISLLCACSRSGMV 605 (857)
T ss_pred HHHHHHHHHcCCHHHHHHHHH----HHHHcC-CCCCcccHHHHHHHHhhcChH
Confidence 888888887 88888888773 333334 456543 344566665544
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.2e-19 Score=179.82 Aligned_cols=301 Identities=11% Similarity=0.045 Sum_probs=249.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhc
Q 009506 115 IKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN---WNTYASLLRAYGRA 191 (533)
Q Consensus 115 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~ 191 (533)
...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|..+++.+...+..++ ..++..+...|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 345678899999999999999863 23566899999999999999999999999987542222 35688899999999
Q ss_pred CChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHhcCChHH
Q 009506 192 RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD----SWTFSSMITICSCRGKVSE 267 (533)
Q Consensus 192 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~ 267 (533)
|++++|..+|+++.+... .+..+++.++..+.+.|++++|.+.++.+.+.+. .++ ...|..+...+.+.|++++
T Consensus 121 g~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~ 198 (389)
T PRK11788 121 GLLDRAEELFLQLVDEGD-FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGG-DSLRVEIAHFYCELAQQALARGDLDA 198 (389)
T ss_pred CCHHHHHHHHHHHHcCCc-chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHHhCCCHHH
Confidence 999999999999988633 3678999999999999999999999999987653 222 2345678888999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHh
Q 009506 268 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEK 346 (533)
Q Consensus 268 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~ 346 (533)
|.++|+++.+.. +.+...+..+...|.+.|++++|.++|+++.+.+......++..+..+|...|+ ++|...++.+.+
T Consensus 199 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 199 ARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999998753 334668888999999999999999999999876433334578889999999999 999999999998
Q ss_pred cCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhc-cCccchhhHHHHHHHHh---cCCHHHHHHHHHHHHhccccCCcc
Q 009506 347 SNSKLGYVVKLLLEEQDIEGDFKKEATELFNSIS-KDVKKAYCNCLIDLCVN---LNLLENACKLLELGLTLEVYTDIQ 421 (533)
Q Consensus 347 ~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~-~~~~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~~~~~ 421 (533)
..|+.... ..++..+.+.|+. ++|..+|+++. ..|+...++.++..+.. .|+.++|+.++++|.+.++.|+..
T Consensus 278 ~~p~~~~~-~~la~~~~~~g~~-~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 278 EYPGADLL-LALAQLLEEQEGP-EAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred hCCCchHH-HHHHHHHHHhCCH-HHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 88876544 7788889999987 99999998754 45788888888888775 568999999999999988877643
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-17 Score=186.96 Aligned_cols=312 Identities=13% Similarity=0.057 Sum_probs=187.7
Q ss_pred HHhhHHHHHhhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 009506 91 KEKSYDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 170 (533)
Q Consensus 91 ~~~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~ 170 (533)
.+..++..+.+.. ..+..++..+...|.+.|++++|..+|+++...+ +.+...+..+...+.+.|++++|..+++.+.
T Consensus 517 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 594 (899)
T TIGR02917 517 DAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAA 594 (899)
T ss_pred HHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4555565555443 3356667777777777777777777777766543 2345566666667777777777777777766
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHH
Q 009506 171 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 250 (533)
Q Consensus 171 ~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~ 250 (533)
+.. +.+..+|..+..+|.+.|++++|...|+++.+.... +...+..+...|.+.|++++|.++|+++.+.. +.+..
T Consensus 595 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~ 670 (899)
T TIGR02917 595 DAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD-SALALLLLADAYAVMKNYAKAITSLKRALELK--PDNTE 670 (899)
T ss_pred HcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHH
Confidence 542 445666677777777777777777777766655322 45566666666666777777777776666543 34566
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHh
Q 009506 251 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 330 (533)
Q Consensus 251 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 330 (533)
++..++..+...|++++|.++++.+.+.+ +.+...+..+...+.+.|++++|...|+++.+.+ |+..++..+..++.
T Consensus 671 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~ 747 (899)
T TIGR02917 671 AQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALL 747 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHH
Confidence 66666666666666666666666665543 3345555566666666666666666666665543 33344555555666
Q ss_pred cCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhcc--CccchhhHHHHHHHHhcCCHHHHHHH
Q 009506 331 QTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK--DVKKAYCNCLIDLCVNLNLLENACKL 407 (533)
Q Consensus 331 ~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l 407 (533)
+.|+ ++|.+.++.+.+..|+.......++..+...|+. ++|...|+++.. +.+..+++.+...+.+.|+ ++|+.+
T Consensus 748 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~ 825 (899)
T TIGR02917 748 ASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDY-DKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEY 825 (899)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHH
Confidence 6666 6666666665555555554445555555555554 556666655432 2233455555555555555 455555
Q ss_pred HHHHHh
Q 009506 408 LELGLT 413 (533)
Q Consensus 408 ~~~m~~ 413 (533)
++++..
T Consensus 826 ~~~~~~ 831 (899)
T TIGR02917 826 AEKALK 831 (899)
T ss_pred HHHHHh
Confidence 555543
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.3e-17 Score=181.42 Aligned_cols=316 Identities=13% Similarity=0.034 Sum_probs=270.0
Q ss_pred hHHhhHHHHHhhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 009506 90 LKEKSYDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 169 (533)
Q Consensus 90 ~~~~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m 169 (533)
..+...+.++.+.. ..+...+..+...+.+.|++++|.+.|+++.+.. +.+..++..+...+.+.|+.++|..+|+++
T Consensus 482 ~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 559 (899)
T TIGR02917 482 AKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKA 559 (899)
T ss_pred HHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 35677777776543 3456778889999999999999999999998754 347888999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCH
Q 009506 170 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 249 (533)
Q Consensus 170 ~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~ 249 (533)
.+.+ +.+...+..+...|.+.|++++|..+++.+.+... .+..+|..+...|.+.|++++|.+.|+.+.+.. +.+.
T Consensus 560 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~ 635 (899)
T TIGR02917 560 AELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAP-DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ--PDSA 635 (899)
T ss_pred HHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCh
Confidence 8765 45677888999999999999999999999987643 478899999999999999999999999998764 4577
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 009506 250 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM 329 (533)
Q Consensus 250 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 329 (533)
..+..+...|.+.|++++|..+|+++.+.. +.+..++..++..+...|++++|..+++.+.+.+ ..+...+..+...+
T Consensus 636 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 713 (899)
T TIGR02917 636 LALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLY 713 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHH
Confidence 889999999999999999999999988753 3458899999999999999999999999998875 34666788888999
Q ss_pred hcCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhcc--CccchhhHHHHHHHHhcCCHHHHHH
Q 009506 330 TQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK--DVKKAYCNCLIDLCVNLNLLENACK 406 (533)
Q Consensus 330 ~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~ 406 (533)
...|+ ++|.+.++.+....|+. .....++..+...|+. ++|.+.++++.. +.+...+..+...|.+.|+.++|..
T Consensus 714 ~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~-~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~ 791 (899)
T TIGR02917 714 LRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNT-AEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIK 791 (899)
T ss_pred HHCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHH
Confidence 99999 99999999999888877 3446677888888987 899998888653 3456688999999999999999999
Q ss_pred HHHHHHhcc
Q 009506 407 LLELGLTLE 415 (533)
Q Consensus 407 l~~~m~~~g 415 (533)
.|+++.+..
T Consensus 792 ~~~~~~~~~ 800 (899)
T TIGR02917 792 HYRTVVKKA 800 (899)
T ss_pred HHHHHHHhC
Confidence 999998764
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.6e-16 Score=160.22 Aligned_cols=283 Identities=15% Similarity=0.145 Sum_probs=227.9
Q ss_pred HHhhHHHHHhhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHH
Q 009506 91 KEKSYDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN---MITYNNLLDTMGRAKRPWQVKTIYK 167 (533)
Q Consensus 91 ~~~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd---~~~~~~li~~~~~~g~~~~a~~~~~ 167 (533)
.+...+.++.+.. ..+..++..+...|.+.|++++|..+++.+...+..++ ...+..+...|.+.|++++|..+|+
T Consensus 53 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~ 131 (389)
T PRK11788 53 KAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFL 131 (389)
T ss_pred HHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4667777777653 34567899999999999999999999999987532222 3568889999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 009506 168 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS----VTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 243 (533)
Q Consensus 168 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 243 (533)
++.+.. +.+..+++.++..|.+.|++++|.++++.+.+.+..+. ...|..+...+.+.|++++|.+.|+++.+..
T Consensus 132 ~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 210 (389)
T PRK11788 132 QLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD 210 (389)
T ss_pred HHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC
Confidence 999753 45778999999999999999999999999998764432 2245677788899999999999999998754
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHH
Q 009506 244 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 323 (533)
Q Consensus 244 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 323 (533)
+.+...+..+...|.+.|++++|.++|+++.+.+......+++.++.+|.+.|++++|...++++.+. .|+...+.
T Consensus 211 --p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~ 286 (389)
T PRK11788 211 --PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLL 286 (389)
T ss_pred --cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHH
Confidence 44577888899999999999999999999987542222467889999999999999999999999876 46767778
Q ss_pred HHHHHHhcCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhhh--hccHHHHHHHHHhhhc
Q 009506 324 CLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDI--EGDFKKEATELFNSIS 380 (533)
Q Consensus 324 ~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~~a~~~~~~~~ 380 (533)
.+...+.+.|+ ++|.++++.+.+..|+...+...+...... .|+. +++..+|+++.
T Consensus 287 ~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~-~~a~~~~~~~~ 345 (389)
T PRK11788 287 ALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRA-KESLLLLRDLV 345 (389)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccc-hhHHHHHHHHH
Confidence 89999999999 999999999998888876554344332211 3444 77888777664
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=6e-15 Score=137.97 Aligned_cols=308 Identities=18% Similarity=0.207 Sum_probs=226.0
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 009506 104 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 183 (533)
Q Consensus 104 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 183 (533)
...+..+|..||.+++|.-..+.|.++|++-.+...+.+..+||.+|.+-.-.. ..+++.+|....+.||..|+|+
T Consensus 203 ~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNa 278 (625)
T KOG4422|consen 203 LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNA 278 (625)
T ss_pred cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHH
Confidence 345789999999999999999999999999998878899999999998764332 3889999999999999999999
Q ss_pred HHHHHHhcCChHHH----HHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHh----CCC--C-CCCHHH
Q 009506 184 LLRAYGRARYGEDT----LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDE-AFEIFEDMKS----SEN--C-QPDSWT 251 (533)
Q Consensus 184 ll~~~~~~g~~~~a----~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~----~~~--~-~p~~~~ 251 (533)
++.+..+.|+++.| .+++.+|++.|++|...+|..+|..+++.++..+ |..++.++.. +.. + +.|...
T Consensus 279 lL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~F 358 (625)
T KOG4422|consen 279 LLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKF 358 (625)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHH
Confidence 99999999988764 7889999999999999999999999999887644 4445544432 211 1 226788
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHH
Q 009506 252 FSSMITICSCRGKVSEAEAMFNEMLEA----GFEPN---LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 324 (533)
Q Consensus 252 ~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 324 (533)
|...|..|.+..+.+.|.++..-+... -+.|+ .+-|..+..+.|+....+.....|+.|+-.-.-|+..+...
T Consensus 359 F~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~ 438 (625)
T KOG4422|consen 359 FQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIH 438 (625)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHH
Confidence 899999999999999999987766431 12233 23466777788888888888888888888777788888888
Q ss_pred HHHHHhcCCh-HHHHHHHHHHHhcCCChhHHH--HHHHHhhhhh--------ccH----HHHHHHHHhhhc--------c
Q 009506 325 LLNVMTQTPK-EELGKLVECVEKSNSKLGYVV--KLLLEEQDIE--------GDF----KKEATELFNSIS--------K 381 (533)
Q Consensus 325 ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~--~~l~~~~~~~--------g~~----~~~a~~~~~~~~--------~ 381 (533)
++++....+. +-.-+++..+...+......+ .++....... .++ .+-|..+++..+ .
T Consensus 439 ~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~ 518 (625)
T KOG4422|consen 439 LLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQ 518 (625)
T ss_pred HHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc
Confidence 8888888877 777777776666554443333 1111111100 000 011222222221 1
Q ss_pred CccchhhHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 009506 382 DVKKAYCNCLIDLCVNLNLLENACKLLELGLTLE 415 (533)
Q Consensus 382 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 415 (533)
+......++.+-.+.+.|..++|-++|....+.+
T Consensus 519 ~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~ 552 (625)
T KOG4422|consen 519 DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKH 552 (625)
T ss_pred cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcC
Confidence 2233466777778888888888888888886554
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=6e-14 Score=149.18 Aligned_cols=314 Identities=12% Similarity=0.035 Sum_probs=249.2
Q ss_pred HHhhHHHHHhhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 009506 91 KEKSYDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 170 (533)
Q Consensus 91 ~~~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~ 170 (533)
.+..+........... ...+..++..+...|++++|+..|+++.+.. +-+...|..+...+...|++++|+..|++..
T Consensus 60 ~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al 137 (656)
T PRK15174 60 VGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAW 137 (656)
T ss_pred hhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555555555554444 3344445566677999999999999998752 2356678888899999999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHH
Q 009506 171 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 250 (533)
Q Consensus 171 ~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~ 250 (533)
+.. +.+...+..+...+...|++++|...++.+......+ ...+..+ ..+...|++++|...++.+..... .++..
T Consensus 138 ~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~-~~~~~ 213 (656)
T PRK15174 138 LAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATC-LSFLNKSRLPEDHDLARALLPFFA-LERQE 213 (656)
T ss_pred HhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCC-Ccchh
Confidence 753 3457788899999999999999999999887765443 3334333 347889999999999999877542 34455
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhH----HHHHHHHhhhCCCCCC-HHHHHHH
Q 009506 251 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD----VVRALNRLPELGITPD-DRFCGCL 325 (533)
Q Consensus 251 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~----a~~~~~~m~~~g~~p~-~~~~~~l 325 (533)
.+..+...+.+.|++++|...|++..+.. +.+...+..+...|...|++++ |...|++..+.. |+ ...+..+
T Consensus 214 ~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~--P~~~~a~~~l 290 (656)
T PRK15174 214 SAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN--SDNVRIVTLY 290 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC--CCCHHHHHHH
Confidence 56666788999999999999999988754 3457788889999999999986 899999988753 44 5588889
Q ss_pred HHHHhcCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhcc-Cccch-hhHHHHHHHHhcCCHH
Q 009506 326 LNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK-DVKKA-YCNCLIDLCVNLNLLE 402 (533)
Q Consensus 326 l~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~~-~~~~~-~~~~li~~~~~~g~~~ 402 (533)
...+...|+ ++|...++.+....|+.......++..+...|+. ++|...|+++.. .|+.. .+..+..++...|+.+
T Consensus 291 g~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~-~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~d 369 (656)
T PRK15174 291 ADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQY-TAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTS 369 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHH
Confidence 999999999 9999999999999999888888899999999987 999999988763 44443 3444677899999999
Q ss_pred HHHHHHHHHHhc
Q 009506 403 NACKLLELGLTL 414 (533)
Q Consensus 403 ~A~~l~~~m~~~ 414 (533)
+|...|++..+.
T Consensus 370 eA~~~l~~al~~ 381 (656)
T PRK15174 370 EAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHHHh
Confidence 999999987654
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.8e-14 Score=148.75 Aligned_cols=296 Identities=7% Similarity=-0.070 Sum_probs=240.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 009506 112 STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA 191 (533)
Q Consensus 112 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 191 (533)
-.++..+.+.|++++|+.+++........ +...+..++.+....|++++|+..|+++.+.. +.+...+..+...+.+.
T Consensus 46 ~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~ 123 (656)
T PRK15174 46 ILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKS 123 (656)
T ss_pred HHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHc
Confidence 34677788999999999999999876433 44556666677788999999999999999864 44567888899999999
Q ss_pred CChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 009506 192 RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 271 (533)
Q Consensus 192 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 271 (533)
|++++|...|++..+.... +...+..+...+...|++++|...++.+.... +.+...+..+ ..+...|++++|..+
T Consensus 124 g~~~~Ai~~l~~Al~l~P~-~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~--P~~~~a~~~~-~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 124 KQYATVADLAEQAWLAFSG-NSQIFALHLRTLVLMDKELQAISLARTQAQEV--PPRGDMIATC-LSFLNKSRLPEDHDL 199 (656)
T ss_pred CCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--CCCHHHHHHH-HHHHHcCCHHHHHHH
Confidence 9999999999999886433 67788899999999999999999999887654 2333444343 348889999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HH----HHHHHHHHHh
Q 009506 272 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EE----LGKLVECVEK 346 (533)
Q Consensus 272 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~----a~~~~~~~~~ 346 (533)
++.+.+..-.++...+..+..++.+.|++++|...|++..+.. ..+...+..+...+...|+ ++ |...++.+..
T Consensus 200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 9998775433445555666788999999999999999998764 2245577778888999998 54 8899999999
Q ss_pred cCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhcc-Cc-cchhhHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 009506 347 SNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK-DV-KKAYCNCLIDLCVNLNLLENACKLLELGLTLE 415 (533)
Q Consensus 347 ~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 415 (533)
..|+.......++..+...|+. ++|...+++... .| +...+..+..+|.+.|++++|+..++++....
T Consensus 279 l~P~~~~a~~~lg~~l~~~g~~-~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~ 348 (656)
T PRK15174 279 FNSDNVRIVTLYADALIRTGQN-EKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREK 348 (656)
T ss_pred hCCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 9999888888999999999987 999999988653 33 44577889999999999999999999987653
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.5e-12 Score=138.63 Aligned_cols=299 Identities=15% Similarity=0.068 Sum_probs=236.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009506 110 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 189 (533)
Q Consensus 110 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 189 (533)
.+......|.+.|++++|+..|++... +.|+...|..+..+|.+.|++++|++.++..++.. +.+...|..+..+|.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 456677888999999999999999887 46888889999999999999999999999998764 345678888999999
Q ss_pred hcCChHHHHHHHHHHHHcCC----------------------------Cc----CHHHHHHH------------------
Q 009506 190 RARYGEDTLSVYREMKEKGM----------------------------QL----SVTLYNTL------------------ 219 (533)
Q Consensus 190 ~~g~~~~a~~~~~~m~~~g~----------------------------~~----~~~~~~~l------------------ 219 (533)
..|++++|+.-|......+. .| ........
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence 99999999776544322110 00 00000000
Q ss_pred ---------HHHH------HhcCCHHHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 009506 220 ---------LAMC------ADVGYTDEAFEIFEDMKSSENCQP-DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 283 (533)
Q Consensus 220 ---------i~~~------~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 283 (533)
+..+ ...+++++|.+.|+.....+...| +...|+.+...+...|++++|...|++..+. .|+
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~ 363 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPR 363 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCC
Confidence 0000 123578899999999887652233 4667888889999999999999999998875 355
Q ss_pred -HHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHHHHHHHHh
Q 009506 284 -LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEE 361 (533)
Q Consensus 284 -~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~ 361 (533)
...|..+...+...|++++|...|++..+.. .-+..++..+...+...|+ ++|...++...+.+|+.......++..
T Consensus 364 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~ 442 (615)
T TIGR00990 364 VTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVT 442 (615)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHH
Confidence 6688888999999999999999999998763 2245688888889999999 999999999999999988877888889
Q ss_pred hhhhccHHHHHHHHHhhhcc-Cc-cchhhHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 009506 362 QDIEGDFKKEATELFNSISK-DV-KKAYCNCLIDLCVNLNLLENACKLLELGLTLE 415 (533)
Q Consensus 362 ~~~~g~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 415 (533)
+.+.|+. ++|+..|++... .| +...|+.+...+...|++++|++.|++..+..
T Consensus 443 ~~~~g~~-~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~ 497 (615)
T TIGR00990 443 QYKEGSI-ASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELE 497 (615)
T ss_pred HHHCCCH-HHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 9999987 999999988643 33 45688999999999999999999999987654
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.65 E-value=2e-12 Score=137.72 Aligned_cols=339 Identities=12% Similarity=0.020 Sum_probs=247.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-C-------
Q 009506 103 KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG-L------- 174 (533)
Q Consensus 103 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~------- 174 (533)
.+.|++..|..+..+|.+.|++++|++.++...+.. +.+...|..+..+|...|++++|+.-|......+ .
T Consensus 155 ~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~ 233 (615)
T TIGR00990 155 ECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQ 233 (615)
T ss_pred hcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHH
Confidence 356788899999999999999999999999998753 2356788889999999999999987665443211 0
Q ss_pred --------------------CC----CHHHHHHH---------------------------HHHH------HhcCChHHH
Q 009506 175 --------------------SP----NWNTYASL---------------------------LRAY------GRARYGEDT 197 (533)
Q Consensus 175 --------------------~p----~~~~~~~l---------------------------l~~~------~~~g~~~~a 197 (533)
.| ........ +..+ ...+++++|
T Consensus 234 ~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A 313 (615)
T TIGR00990 234 AVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEA 313 (615)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHH
Confidence 00 00000000 0000 112578899
Q ss_pred HHHHHHHHHcC-CCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 009506 198 LSVYREMKEKG-MQL-SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM 275 (533)
Q Consensus 198 ~~~~~~m~~~g-~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 275 (533)
.+.|++..+.+ ..| ....|+.+...+...|++++|+..|++..+.. +.+...|..+...+...|++++|...|++.
T Consensus 314 ~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~--P~~~~~~~~la~~~~~~g~~~eA~~~~~~a 391 (615)
T TIGR00990 314 ARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD--PRVTQSYIKRASMNLELGDPDKAEEDFDKA 391 (615)
T ss_pred HHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999988765 223 45678888888889999999999999988753 345678888899999999999999999998
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCC-HHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChhH
Q 009506 276 LEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD-DRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGY 353 (533)
Q Consensus 276 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~ 353 (533)
.+.. +.+...|..+...|...|++++|...|++..+.. |+ ...+..+..++.+.|+ ++|...++...+..|+...
T Consensus 392 l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~--P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~ 468 (615)
T TIGR00990 392 LKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD--PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPD 468 (615)
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChH
Confidence 7753 3357788888999999999999999999988753 44 4566777888888888 9999999999888888888
Q ss_pred HHHHHHHhhhhhccHHHHHHHHHhhhcc-Ccc--ch------hhHHHHHHHHhcCCHHHHHHHHHHHHhccccCCccccC
Q 009506 354 VVKLLLEEQDIEGDFKKEATELFNSISK-DVK--KA------YCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRS 424 (533)
Q Consensus 354 ~~~~l~~~~~~~g~~~~~a~~~~~~~~~-~~~--~~------~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~ 424 (533)
....++..+...|++ ++|...|++... .++ .. .++..+..+...|++++|..++++..... |+.
T Consensus 469 ~~~~lg~~~~~~g~~-~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~--p~~---- 541 (615)
T TIGR00990 469 VYNYYGELLLDQNKF-DEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID--PEC---- 541 (615)
T ss_pred HHHHHHHHHHHccCH-HHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC--CCc----
Confidence 888888888888987 899998887532 221 11 22223334445699999999999887654 332
Q ss_pred ccceeecccccCh-hhHHHHHHHHHHHHHHH
Q 009506 425 PTQWSLHLKSLSL-GAALTALHIWINDLSKA 454 (533)
Q Consensus 425 ~~~~~~~l~~~~~-g~~~~a~~~~~~~l~~~ 454 (533)
...|..+...+.. |...+|+..+.+.++-.
T Consensus 542 ~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 542 DIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 2234444555544 88888887776655543
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.7e-12 Score=145.78 Aligned_cols=317 Identities=13% Similarity=0.067 Sum_probs=218.6
Q ss_pred HhhHHHHHhhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCHHHHHHH------------HHHHHhcCC
Q 009506 92 EKSYDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK-PNMITYNNL------------LDTMGRAKR 158 (533)
Q Consensus 92 ~~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-pd~~~~~~l------------i~~~~~~g~ 158 (533)
+...+.+..+.. .-|...+..|...|.+.|++++|+..|++..+.... ++...|..+ ...+.+.|+
T Consensus 288 A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~ 366 (1157)
T PRK11447 288 AIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANN 366 (1157)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCC
Confidence 444455555432 236788888999999999999999999988764321 111222222 345668899
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHH--------------------
Q 009506 159 PWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNT-------------------- 218 (533)
Q Consensus 159 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~-------------------- 218 (533)
+++|+..|++..+.. +.+...+..+...|...|++++|++.|++..+.... +...+..
T Consensus 367 ~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~~~~~~~A~~~l~~l 444 (1157)
T PRK11447 367 LAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYRQQSPEKALAFIASL 444 (1157)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCHHHHHHHHHhC
Confidence 999999999988763 345677778888999999999999999988875332 2222222
Q ss_pred ----------------------HHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009506 219 ----------------------LLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 276 (533)
Q Consensus 219 ----------------------li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 276 (533)
+...+...|++++|++.|++..+.. +.+...+..+...|.+.|++++|...|+++.
T Consensus 445 ~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~--P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al 522 (1157)
T PRK11447 445 SASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD--PGSVWLTYRLAQDLRQAGQRSQADALMRRLA 522 (1157)
T ss_pred CHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2234456788888888888887754 3456777788888889999999999988877
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC---------------------------------------CCCC
Q 009506 277 EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL---------------------------------------GITP 317 (533)
Q Consensus 277 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---------------------------------------g~~p 317 (533)
+.. +.+...+..+...+...|+.++|+..++.+... ....
T Consensus 523 ~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~ 601 (1157)
T PRK11447 523 QQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPP 601 (1157)
T ss_pred HcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCC
Confidence 632 123333332323333444444444444332110 0122
Q ss_pred CHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhcc-C-ccchhhHHHHHH
Q 009506 318 DDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK-D-VKKAYCNCLIDL 394 (533)
Q Consensus 318 ~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~~-~-~~~~~~~~li~~ 394 (533)
+...+..+...+.+.|+ ++|...++.+.+..|+.......++..+...|+. ++|++.++.... . .+...+..+..+
T Consensus 602 ~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~-~eA~~~l~~ll~~~p~~~~~~~~la~~ 680 (1157)
T PRK11447 602 STRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDL-AAARAQLAKLPATANDSLNTQRRVALA 680 (1157)
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 33455667777788888 9999999999999998887778888888888887 899999988764 2 244567778888
Q ss_pred HHhcCCHHHHHHHHHHHHhcc
Q 009506 395 CVNLNLLENACKLLELGLTLE 415 (533)
Q Consensus 395 ~~~~g~~~~A~~l~~~m~~~g 415 (533)
+.+.|++++|.++++++....
T Consensus 681 ~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 681 WAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred HHhCCCHHHHHHHHHHHhhhC
Confidence 999999999999999887653
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.2e-13 Score=132.01 Aligned_cols=294 Identities=17% Similarity=0.124 Sum_probs=207.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH-H
Q 009506 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP-NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS-L 184 (533)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~-l 184 (533)
-..+|..+.+.+-..|++++|+.+|+.+.+. +| .+..|..+..++...|+.+.|.+.|.+.++. .|+.....+ +
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~l 190 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDL 190 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Ccchhhhhcch
Confidence 3678999999999999999999999999985 34 5788999999999999999999999998874 466554433 3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcC
Q 009506 185 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD-SWTFSSMITICSCRG 263 (533)
Q Consensus 185 l~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g 263 (533)
-...-..|++++|...|.+..+.... =.+.|+.|...+-..|+...|+..|++..+. .|+ ...|-.|...|...+
T Consensus 191 gnLlka~Grl~ea~~cYlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl---dP~f~dAYiNLGnV~ke~~ 266 (966)
T KOG4626|consen 191 GNLLKAEGRLEEAKACYLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL---DPNFLDAYINLGNVYKEAR 266 (966)
T ss_pred hHHHHhhcccchhHHHHHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcC---CCcchHHHhhHHHHHHHHh
Confidence 33334468888888888877765322 3456777777888888888888888887764 343 566777777777777
Q ss_pred ChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCH-HHHHHHHHHHhcCCh-HHHHHH
Q 009506 264 KVSEAEAMFNEMLEAGFEPN-LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD-RFCGCLLNVMTQTPK-EELGKL 340 (533)
Q Consensus 264 ~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~-~~a~~~ 340 (533)
.+++|...|.+.... .|+ .+.+..|...|-..|.+|.|+..|++..+. .|+- ..|+.|..++...|+ .++...
T Consensus 267 ~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~c 342 (966)
T KOG4626|consen 267 IFDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDC 342 (966)
T ss_pred cchHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHH
Confidence 777777777765542 344 455666666666777777777777776653 3443 366677777777777 777777
Q ss_pred HHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhcc-Cc-cchhhHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009506 341 VECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK-DV-KKAYCNCLIDLCVNLNLLENACKLLELGLT 413 (533)
Q Consensus 341 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 413 (533)
+.......|......+.|+..|...|.+ ++|..+|...-. .| -...+|.|...|.+.|++++|+.-+++.+.
T Consensus 343 YnkaL~l~p~hadam~NLgni~~E~~~~-e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr 416 (966)
T KOG4626|consen 343 YNKALRLCPNHADAMNNLGNIYREQGKI-EEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR 416 (966)
T ss_pred HHHHHHhCCccHHHHHHHHHHHHHhccc-hHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh
Confidence 7777777777766667777777766655 666666665432 12 233566677777777777777776666543
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.7e-11 Score=137.70 Aligned_cols=317 Identities=10% Similarity=0.008 Sum_probs=203.4
Q ss_pred HhhHHHHHhhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH------------------
Q 009506 92 EKSYDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM------------------ 153 (533)
Q Consensus 92 ~~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~------------------ 153 (533)
+...+.++.+.. ..+...+..+...|.+.|++++|++.|++..+.. +.+...+..+...+
T Consensus 370 A~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~ 447 (1157)
T PRK11447 370 AERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQSPEKALAFIASLSAS 447 (1157)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHH
Confidence 455555555543 3466778889999999999999999999988742 22344444444443
Q ss_pred ------------------------HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 009506 154 ------------------------GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 209 (533)
Q Consensus 154 ------------------------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~ 209 (533)
...|++++|++.|++.++.. +-+...+..+...|.+.|++++|...|+++.+...
T Consensus 448 ~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P 526 (1157)
T PRK11447 448 QRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKP 526 (1157)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 23444555555555544432 12233444444455555555555555555444322
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHH---------HHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 009506 210 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW---------TFSSMITICSCRGKVSEAEAMFNEMLEAGF 280 (533)
Q Consensus 210 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~---------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 280 (533)
. +...+..+...+...|+.++|+..++.+..... .++.. .+..+...+...|+.++|.++++. .
T Consensus 527 ~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~-~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~ 599 (1157)
T PRK11447 527 N-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQW-NSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----Q 599 (1157)
T ss_pred C-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhc-ChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----C
Confidence 1 222222233333444555555555544332110 11110 112334556667777777777652 2
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHHHHHHH
Q 009506 281 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLL 359 (533)
Q Consensus 281 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~ 359 (533)
+.+...+..+...+.+.|+.++|+..|++..+.. ..+...+..+...+...|+ ++|.+.++.+.+..|+.......++
T Consensus 600 p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la 678 (1157)
T PRK11447 600 PPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVA 678 (1157)
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 4556677888899999999999999999998864 2246688889999999999 9999999999988888777777778
Q ss_pred HhhhhhccHHHHHHHHHhhhccC-c-c------chhhHHHHHHHHhcCCHHHHHHHHHHHH-hccccCCc
Q 009506 360 EEQDIEGDFKKEATELFNSISKD-V-K------KAYCNCLIDLCVNLNLLENACKLLELGL-TLEVYTDI 420 (533)
Q Consensus 360 ~~~~~~g~~~~~a~~~~~~~~~~-~-~------~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~g~~~~~ 420 (533)
..+...|+. ++|.++|+++... + + ...+..+...+.+.|++++|+..|++.. ..|+.|..
T Consensus 679 ~~~~~~g~~-~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~~~ 747 (1157)
T PRK11447 679 LAWAALGDT-AAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITPTR 747 (1157)
T ss_pred HHHHhCCCH-HHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCCC
Confidence 888888987 9999999987542 1 1 1356667888999999999999999885 44565543
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.9e-12 Score=125.39 Aligned_cols=315 Identities=15% Similarity=0.166 Sum_probs=180.8
Q ss_pred HhhHHHHHhhcCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCChhHHHHHHHHH
Q 009506 92 EKSYDTRARNEKWRI-DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL-LDTMGRAKRPWQVKTIYKEM 169 (533)
Q Consensus 92 ~~~l~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l-i~~~~~~g~~~~a~~~~~~m 169 (533)
+..+...+++ ++| .+..|..+..++...|+.+.|.+.|.+..+ +.|+.....+- -..+-..|+..+|...|.+.
T Consensus 135 al~~y~~aie--l~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~~cYlkA 210 (966)
T KOG4626|consen 135 ALALYRAAIE--LKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAKACYLKA 210 (966)
T ss_pred HHHHHHHHHh--cCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhHHHHHHH
Confidence 3444444443 234 567789999999999999999999988876 34655443322 22222345555555555444
Q ss_pred HHCC--------------------------------CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHH
Q 009506 170 TDNG--------------------------------LSPN-WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLY 216 (533)
Q Consensus 170 ~~~g--------------------------------~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 216 (533)
++.. +.|+ ...|-.|-..|...+.++.|...|.+....... ..+.|
T Consensus 211 i~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn-~A~a~ 289 (966)
T KOG4626|consen 211 IETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPN-HAVAH 289 (966)
T ss_pred HhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCc-chhhc
Confidence 4321 1222 234444455555555555555555444333111 23444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH
Q 009506 217 NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN-LFVLTSLIQCYG 295 (533)
Q Consensus 217 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~ 295 (533)
..|...|...|.++.|+..+++..+.. +.-...|+.|..++-..|++.+|.+.|++.... .|+ ....+.|...|.
T Consensus 290 gNla~iYyeqG~ldlAI~~Ykral~~~--P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NLgni~~ 365 (966)
T KOG4626|consen 290 GNLACIYYEQGLLDLAIDTYKRALELQ--PNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNLGNIYR 365 (966)
T ss_pred cceEEEEeccccHHHHHHHHHHHHhcC--CCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHHHHHHH
Confidence 455555555666666666666655532 122556666666666666666666666665543 233 455666666666
Q ss_pred hcCChhHHHHHHHHhhhCCCCCCHH-HHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHH
Q 009506 296 KAQRTDDVVRALNRLPELGITPDDR-FCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEAT 373 (533)
Q Consensus 296 ~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~ 373 (533)
..|.+++|..+|....+ +.|.-. .++.|...|.+.|+ ++|...+++..+..|.....++.++..|-..|+. +.|.
T Consensus 366 E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v-~~A~ 442 (966)
T KOG4626|consen 366 EQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDV-SAAI 442 (966)
T ss_pred HhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhH-HHHH
Confidence 66666666666666554 233322 55666666666666 6666667766666666666666666666666665 5555
Q ss_pred HHHhhh-ccCcc-chhhHHHHHHHHhcCCHHHHHHHHHHHHhccccCCc
Q 009506 374 ELFNSI-SKDVK-KAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDI 420 (533)
Q Consensus 374 ~~~~~~-~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~ 420 (533)
+.+.+. ...|. ....+.|...|...|+..+|+.-+++.++ ++||.
T Consensus 443 q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDf 489 (966)
T KOG4626|consen 443 QCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDF 489 (966)
T ss_pred HHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCC
Confidence 555443 22222 23556677777777777777777776544 34554
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=7.9e-11 Score=128.09 Aligned_cols=321 Identities=12% Similarity=0.077 Sum_probs=228.8
Q ss_pred HHhhHHHHHhhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 009506 91 KEKSYDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 170 (533)
Q Consensus 91 ~~~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~ 170 (533)
.+..++..... .-..+...+..+...+.+.|++++|.++|++..+.. +.+...+..+..++...|++++|+..+++..
T Consensus 33 ~A~~~~~~~~~-~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l 110 (765)
T PRK10049 33 EVITVYNRYRV-HMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKAKQLV 110 (765)
T ss_pred HHHHHHHHHHh-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34455555544 224566678999999999999999999999987742 3356677788888999999999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH-------------
Q 009506 171 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE------------- 237 (533)
Q Consensus 171 ~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~------------- 237 (533)
+.. +.+.. +..+..++...|+.++|+..++++.+.... +...+..+...+...|..++|++.++
T Consensus 111 ~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~ 187 (765)
T PRK10049 111 SGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLE 187 (765)
T ss_pred HhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHH
Confidence 763 44556 888888999999999999999999987554 55555566666666666555554443
Q ss_pred ---------------------------------HHHhCCCCCCCHH-HHH----HHHHHHHhcCChHHHHHHHHHHHHcC
Q 009506 238 ---------------------------------DMKSSENCQPDSW-TFS----SMITICSCRGKVSEAEAMFNEMLEAG 279 (533)
Q Consensus 238 ---------------------------------~m~~~~~~~p~~~-~~~----~li~~~~~~g~~~~A~~~~~~m~~~g 279 (533)
.+.+...-.|+.. .+. ..+..+...|++++|...|+.+.+.+
T Consensus 188 ~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~ 267 (765)
T PRK10049 188 ADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEG 267 (765)
T ss_pred HHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccC
Confidence 3332200022211 111 11334567799999999999998865
Q ss_pred CC-CCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCC---CHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCC----
Q 009506 280 FE-PNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP---DDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSK---- 350 (533)
Q Consensus 280 ~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~---- 350 (533)
-. |+. ....+..+|...|++++|..+|+++.+..-.. .......+..++...++ ++|..+++.+....|.
T Consensus 268 ~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~ 346 (765)
T PRK10049 268 QIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRL 346 (765)
T ss_pred CCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEee
Confidence 32 332 22225778999999999999999987643211 12345566667888888 9999999998877652
Q ss_pred ---------hh--HHHHHHHHhhhhhccHHHHHHHHHhhhcc--CccchhhHHHHHHHHhcCCHHHHHHHHHHHHhcccc
Q 009506 351 ---------LG--YVVKLLLEEQDIEGDFKKEATELFNSISK--DVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVY 417 (533)
Q Consensus 351 ---------~~--~~~~~l~~~~~~~g~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 417 (533)
.. .....++..+...|+. ++|+++|+++.. +.+...+..+...+...|++++|++.+++.....
T Consensus 347 ~~~~~~~p~~~~~~a~~~~a~~l~~~g~~-~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-- 423 (765)
T PRK10049 347 YGSPTSIPNDDWLQGQSLLSQVAKYSNDL-PQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLE-- 423 (765)
T ss_pred cCCCCCCCCchHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--
Confidence 11 2335566777777877 999999998653 3456688999999999999999999999887654
Q ss_pred CCc
Q 009506 418 TDI 420 (533)
Q Consensus 418 ~~~ 420 (533)
|+.
T Consensus 424 Pd~ 426 (765)
T PRK10049 424 PRN 426 (765)
T ss_pred CCC
Confidence 553
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.7e-11 Score=112.30 Aligned_cols=251 Identities=16% Similarity=0.183 Sum_probs=181.3
Q ss_pred HHhhHHHHHhhcCCCCCHHHHHHHHHHHHH--cCChHH-HHHHHHHHHHCC-------------------CCCCHHHHHH
Q 009506 91 KEKSYDTRARNEKWRIDPNAFSTLIKLYGT--AGNFDG-CLNVYEEMKAIG-------------------VKPNMITYNN 148 (533)
Q Consensus 91 ~~~~l~~~~~~~g~~~~~~~~~~li~~~~~--~g~~~~-A~~~~~~m~~~g-------------------~~pd~~~~~~ 148 (533)
..--+..+|+..|...++..--.|...-+- ..+..- -.+-|-.|.+.| .+.+..+|.+
T Consensus 133 Ds~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~PKT~et~s~ 212 (625)
T KOG4422|consen 133 DSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLPKTDETVSI 212 (625)
T ss_pred hhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcCCCchhHHH
Confidence 345677788888888877776666554322 222211 112222333222 3456789999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC
Q 009506 149 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 228 (533)
Q Consensus 149 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 228 (533)
||.++++--..+.|.++|++-.+...+.+..+||.+|.+-.-. ...+++.+|....+.||..|+|+++.+..+.|+
T Consensus 213 mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~ 288 (625)
T KOG4422|consen 213 MIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNALLSCAAKFGK 288 (625)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcc
Confidence 9999999999999999999999888899999999999875432 238899999999999999999999999999998
Q ss_pred HHH----HHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHH-HHHHHHHHHH----cCCCC----CHHHHHHHHHHHH
Q 009506 229 TDE----AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE-AEAMFNEMLE----AGFEP----NLFVLTSLIQCYG 295 (533)
Q Consensus 229 ~~~----A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~----~g~~p----~~~~~~~li~~~~ 295 (533)
++. |.+++.+|++.|+ .|...+|..+|..+++.++..+ |..++.++.. ..++| |..-|..-+..|.
T Consensus 289 F~~ar~aalqil~EmKeiGV-ePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~ 367 (625)
T KOG4422|consen 289 FEDARKAALQILGEMKEIGV-EPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICS 367 (625)
T ss_pred hHHHHHHHHHHHHHHHHhCC-CcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHH
Confidence 765 5677889999997 9999999999999999988754 4444444432 22333 3455667777788
Q ss_pred hcCChhHHHHHHHHhhhC----CCCCCHH---HHHHHHHHHhcCCh-HHHHHHHHHHHh
Q 009506 296 KAQRTDDVVRALNRLPEL----GITPDDR---FCGCLLNVMTQTPK-EELGKLVECVEK 346 (533)
Q Consensus 296 ~~g~~~~a~~~~~~m~~~----g~~p~~~---~~~~ll~~~~~~~~-~~a~~~~~~~~~ 346 (533)
+..+.+.|.++-.-+... -+.|+.. -|..+..+.++... +...++++.+..
T Consensus 368 ~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP 426 (625)
T KOG4422|consen 368 SLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVP 426 (625)
T ss_pred HhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 888888888876665432 1233322 45677777777777 778888887664
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.8e-11 Score=119.26 Aligned_cols=292 Identities=11% Similarity=-0.005 Sum_probs=216.4
Q ss_pred HHHHHHHH--HHcCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH--HHHHHHH
Q 009506 111 FSTLIKLY--GTAGNFDGCLNVYEEMKAIGVKPNMIT-YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW--NTYASLL 185 (533)
Q Consensus 111 ~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~pd~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~~~~~ll 185 (533)
+..+.++. ...|+++.|.+.+.+..+. .|+... |-....++.+.|+++.|.+.|++..+.. |+. ...-...
T Consensus 85 ~~~~~~glla~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a 160 (409)
T TIGR00540 85 QKQTEEALLKLAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIART 160 (409)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHH
Confidence 44455555 3579999999999888775 355333 3344566778899999999999987653 444 3444458
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHH-HHHHHH---Hh
Q 009506 186 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS-SMITIC---SC 261 (533)
Q Consensus 186 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~-~li~~~---~~ 261 (533)
..+...|+++.|...++.+.+.... +..++..+...+...|++++|.++++.+.+.+. .+...+. .-..++ ..
T Consensus 161 ~l~l~~~~~~~Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~--~~~~~~~~l~~~a~~~~l~ 237 (409)
T TIGR00540 161 RILLAQNELHAARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGL--FDDEEFADLEQKAEIGLLD 237 (409)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHHHH
Confidence 8888999999999999999998755 778888999999999999999999999999874 3333332 111221 33
Q ss_pred cCChHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHH-HHHHHHHh--cCCh-
Q 009506 262 RGKVSEAEAMFNEMLEAG---FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC-GCLLNVMT--QTPK- 334 (533)
Q Consensus 262 ~g~~~~A~~~~~~m~~~g---~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~-~~ll~~~~--~~~~- 334 (533)
.+..+++.+.+..+.+.. .+.+...+..+...+...|+.++|.+++++..+.. ||.... ..++..+. ..++
T Consensus 238 ~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~ 315 (409)
T TIGR00540 238 EAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDN 315 (409)
T ss_pred HHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCCh
Confidence 333333344555544432 12378889999999999999999999999998754 443311 01223222 2344
Q ss_pred HHHHHHHHHHHhcCCChh--HHHHHHHHhhhhhccHHHHHHHHHh---hhccCccchhhHHHHHHHHhcCCHHHHHHHHH
Q 009506 335 EELGKLVECVEKSNSKLG--YVVKLLLEEQDIEGDFKKEATELFN---SISKDVKKAYCNCLIDLCVNLNLLENACKLLE 409 (533)
Q Consensus 335 ~~a~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~~a~~~~~---~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 409 (533)
..+.+.++...+..|+.. .+...++..+.+.|++ ++|.+.|+ .....|+...+..+...+.+.|+.++|.++++
T Consensus 316 ~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~-~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~ 394 (409)
T TIGR00540 316 EKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEF-IEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQ 394 (409)
T ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccH-HHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 788888999899999888 7778999999999988 99999999 34456777788899999999999999999999
Q ss_pred HHH
Q 009506 410 LGL 412 (533)
Q Consensus 410 ~m~ 412 (533)
+..
T Consensus 395 ~~l 397 (409)
T TIGR00540 395 DSL 397 (409)
T ss_pred HHH
Confidence 764
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.3e-10 Score=116.59 Aligned_cols=291 Identities=11% Similarity=0.051 Sum_probs=223.8
Q ss_pred HHHHHHHH--HcCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH--HHHH
Q 009506 112 STLIKLYG--TAGNFDGCLNVYEEMKAIGVKPNMIT-YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA--SLLR 186 (533)
Q Consensus 112 ~~li~~~~--~~g~~~~A~~~~~~m~~~g~~pd~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~--~ll~ 186 (533)
..+..+.. -.|++++|.+.+....+.. ++... |-....+..+.|+++.|.+.|.++.+. .|+...+. ....
T Consensus 86 ~~~~~gl~a~~eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~ 161 (398)
T PRK10747 86 KQTEQALLKLAEGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVR 161 (398)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHH
Confidence 33444443 2599999999888876642 22333 333344457899999999999999874 46654433 3467
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCH------HHHHHHHHHHH
Q 009506 187 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS------WTFSSMITICS 260 (533)
Q Consensus 187 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~------~~~~~li~~~~ 260 (533)
.+...|+++.|.+.++++.+.... +...+..+...|.+.|++++|.+++..+.+.....++. .+|..++....
T Consensus 162 l~l~~g~~~~Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~ 240 (398)
T PRK10747 162 IQLARNENHAARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAM 240 (398)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999998755 78889999999999999999999999999887532221 23444555555
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHH
Q 009506 261 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGK 339 (533)
Q Consensus 261 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~ 339 (533)
...+.+...++++.+.+. .+.+......+..++...|+.++|.+++++..+. .+|.... ++.+....++ +++.+
T Consensus 241 ~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~ 315 (398)
T PRK10747 241 ADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEK 315 (398)
T ss_pred HhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHH
Confidence 566667777777776432 3457888899999999999999999999998874 4455322 2223334466 89999
Q ss_pred HHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhcc-CccchhhHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009506 340 LVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK-DVKKAYCNCLIDLCVNLNLLENACKLLELGLT 413 (533)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 413 (533)
.++...+..|+.......++..+...+++ ++|.+.|+.... .|+...|-.|...+.+.|+.++|..++++...
T Consensus 316 ~~e~~lk~~P~~~~l~l~lgrl~~~~~~~-~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 316 VLRQQIKQHGDTPLLWSTLGQLLMKHGEW-QEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999999998889999999999988 999999998754 57888888999999999999999999998754
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.7e-10 Score=122.85 Aligned_cols=319 Identities=11% Similarity=0.011 Sum_probs=232.2
Q ss_pred HHhhHHHHHhhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 009506 91 KEKSYDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 170 (533)
Q Consensus 91 ~~~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~ 170 (533)
.+..++....... +.++..+..++..+.+.|++++|+..++++.+.. +.+.. +..+..++...|+.++|+..++++.
T Consensus 67 ~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al 143 (765)
T PRK10049 67 NSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQAL 143 (765)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3455555555432 3356777889999999999999999999998752 33455 8888889999999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChHHHHH----------------------------------------------HHHHH
Q 009506 171 DNGLSPNWNTYASLLRAYGRARYGEDTLS----------------------------------------------VYREM 204 (533)
Q Consensus 171 ~~g~~p~~~~~~~ll~~~~~~g~~~~a~~----------------------------------------------~~~~m 204 (533)
+.. +-+...+..+..++.+.+..+.|++ .++.+
T Consensus 144 ~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~l 222 (765)
T PRK10049 144 PRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDAL 222 (765)
T ss_pred HhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHH
Confidence 864 3345555666666666666554443 33344
Q ss_pred HHc-CCCcCHH-HH----HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 009506 205 KEK-GMQLSVT-LY----NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA 278 (533)
Q Consensus 205 ~~~-g~~~~~~-~~----~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 278 (533)
.+. ...|+.. .+ ...+.++...|++++|++.|+.+.+.+...|+. .-..+...|...|++++|..+|+++.+.
T Consensus 223 l~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~ 301 (765)
T PRK10049 223 EALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYH 301 (765)
T ss_pred HhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhc
Confidence 322 1112211 11 111344567799999999999998875311332 2223577899999999999999998764
Q ss_pred CCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHhhhCC-----------CCCCH---HHHHHHHHHHhcCCh-HHHHHH
Q 009506 279 GFEP---NLFVLTSLIQCYGKAQRTDDVVRALNRLPELG-----------ITPDD---RFCGCLLNVMTQTPK-EELGKL 340 (533)
Q Consensus 279 g~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-----------~~p~~---~~~~~ll~~~~~~~~-~~a~~~ 340 (533)
.-.. ....+..|..++...|++++|..+++++.+.. -.|+. ..+..+...+...|+ ++|.++
T Consensus 302 ~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~ 381 (765)
T PRK10049 302 PETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMR 381 (765)
T ss_pred CCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3111 13456677778899999999999999998652 12342 245567778888899 999999
Q ss_pred HHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhcc-Cc-cchhhHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 009506 341 VECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK-DV-KKAYCNCLIDLCVNLNLLENACKLLELGLTLE 415 (533)
Q Consensus 341 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 415 (533)
++.+....|+.......++..+...|+. ++|++.+++... .| +...+-.++..+.+.|++++|..+++.+++..
T Consensus 382 l~~al~~~P~n~~l~~~lA~l~~~~g~~-~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 382 ARELAYNAPGNQGLRIDYASVLQARGWP-RAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 9999999999988888899999898986 999999998754 34 45577788889999999999999999998753
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.6e-13 Score=131.36 Aligned_cols=256 Identities=18% Similarity=0.152 Sum_probs=80.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 009506 113 TLIKLYGTAGNFDGCLNVYEEMKAIGVKP-NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA 191 (533)
Q Consensus 113 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 191 (533)
.+...+.+.|++++|++++++......+| |...|..+...+-..++++.|++.++++...+- -+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-ccc
Confidence 44666777788888888875543322123 344444444555567777777777777776542 245556666666 567
Q ss_pred CChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 009506 192 RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 271 (533)
Q Consensus 192 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 271 (533)
+++++|.+++++..+.. ++...+..++..+.+.++++++.++++.+......+.+...|..+...+.+.|+.++|.++
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 77777777776655442 3455566677777777777777777777665433245666677777777777777777777
Q ss_pred HHHHHHcCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCC
Q 009506 272 FNEMLEAGFEPN-LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNS 349 (533)
Q Consensus 272 ~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~ 349 (533)
+++..+.. |+ ....+.++..+...|+.+++.++++...+.. ..|...+..+..++...|+ ++|..+++...+.+|
T Consensus 169 ~~~al~~~--P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p 245 (280)
T PF13429_consen 169 YRKALELD--PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP 245 (280)
T ss_dssp HHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHcC--CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccccc
Confidence 77766642 43 5566667777777777777666666665442 2233344555555555555 555555555555555
Q ss_pred ChhHHHHHHHHhhhhhccHHHHHHHHH
Q 009506 350 KLGYVVKLLLEEQDIEGDFKKEATELF 376 (533)
Q Consensus 350 ~~~~~~~~l~~~~~~~g~~~~~a~~~~ 376 (533)
+...+...++..+...|+. ++|.++.
T Consensus 246 ~d~~~~~~~a~~l~~~g~~-~~A~~~~ 271 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRK-DEALRLR 271 (280)
T ss_dssp T-HHHHHHHHHHHT-------------
T ss_pred ccccccccccccccccccc-ccccccc
Confidence 4444444444444444433 4444443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.2e-09 Score=117.29 Aligned_cols=295 Identities=13% Similarity=0.099 Sum_probs=194.6
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 009506 115 IKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 194 (533)
Q Consensus 115 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 194 (533)
...|...|++++|+++|+++.+.. +-|...+..++..+...++.++|++.++++... .|+...+-.++..+...++.
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~ 185 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRN 185 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchH
Confidence 446666677777777777776642 223455556666677777777777777777654 35545554444444445555
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH-----------------------------------
Q 009506 195 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM----------------------------------- 239 (533)
Q Consensus 195 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----------------------------------- 239 (533)
.+|++.++++.+.... +...+..+..++.+.|-...|+++..+-
T Consensus 186 ~~AL~~~ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~ 264 (822)
T PRK14574 186 YDALQASSEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERF 264 (822)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhH
Confidence 5577777777776433 4555555555555555444444433221
Q ss_pred -------------HhCCCCCCC-HHHH----HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh
Q 009506 240 -------------KSSENCQPD-SWTF----SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 301 (533)
Q Consensus 240 -------------~~~~~~~p~-~~~~----~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 301 (533)
...-.-.|. ...| -=.+-++...|++.++.+.|+.|...|.+.-..+-..+.++|...++.+
T Consensus 265 ~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~ 344 (822)
T PRK14574 265 DIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPE 344 (822)
T ss_pred HHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcH
Confidence 110000121 1111 1234466778888999999999988776655667888999999999999
Q ss_pred HHHHHHHHhhhCC-----CCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCC---------------ChhHHHHHHHH
Q 009506 302 DVVRALNRLPELG-----ITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNS---------------KLGYVVKLLLE 360 (533)
Q Consensus 302 ~a~~~~~~m~~~g-----~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~---------------~~~~~~~~l~~ 360 (533)
+|..+|+.+.... ..++......|.-++...++ ++|..+++.+.+..| +.......++.
T Consensus 345 kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~ 424 (822)
T PRK14574 345 KAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQ 424 (822)
T ss_pred HHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHH
Confidence 9999999986543 12233345778889999999 999999998887433 22233355666
Q ss_pred hhhhhccHHHHHHHHHhhhcc--CccchhhHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 009506 361 EQDIEGDFKKEATELFNSISK--DVKKAYCNCLIDLCVNLNLLENACKLLELGLTL 414 (533)
Q Consensus 361 ~~~~~g~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 414 (533)
.+.-.|++ .+|++.++++.. +.|......+.+.+...|.+.+|...++.....
T Consensus 425 ~~~~~gdl-~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l 479 (822)
T PRK14574 425 SLVALNDL-PTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESL 479 (822)
T ss_pred HHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 66677877 999999998853 457778999999999999999999999776554
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.43 E-value=9.7e-13 Score=126.00 Aligned_cols=257 Identities=15% Similarity=0.131 Sum_probs=108.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc
Q 009506 148 NLLDTMGRAKRPWQVKTIYKEMTDNGL-SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 226 (533)
Q Consensus 148 ~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 226 (533)
.+-..+.+.|++++|++++++.....- +-|...|..+...+...++.+.|++.++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 556778899999999999976554432 334455556666777889999999999999987655 66677777777 789
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCChhHHHH
Q 009506 227 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA-GFEPNLFVLTSLIQCYGKAQRTDDVVR 305 (533)
Q Consensus 227 g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~ 305 (533)
+++++|.++++..-+. .++...+..++..+.+.++++++.++++.+... ....+...|..+...+.+.|+.++|.+
T Consensus 91 ~~~~~A~~~~~~~~~~---~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER---DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred cccccccccccccccc---ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999876554 356677888999999999999999999998753 235677888899999999999999999
Q ss_pred HHHHhhhCCCCCC-HHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhcc--
Q 009506 306 ALNRLPELGITPD-DRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK-- 381 (533)
Q Consensus 306 ~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~~-- 381 (533)
.|++..+.. |+ ......++..+...|+ +++..+++...+..++...+...++.++...|+. ++|+..|++...
T Consensus 168 ~~~~al~~~--P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~-~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 168 DYRKALELD--PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRY-EEALEYLEKALKLN 244 (280)
T ss_dssp HHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-H-HHHHHHHHHHHHHS
T ss_pred HHHHHHHcC--CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccc-cccccccccccccc
Confidence 999998754 65 6678889999999999 8888888888777666666667888888888987 999999998764
Q ss_pred CccchhhHHHHHHHHhcCCHHHHHHHHHHHH
Q 009506 382 DVKKAYCNCLIDLCVNLNLLENACKLLELGL 412 (533)
Q Consensus 382 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 412 (533)
+.|......+.+++.+.|+.++|..+.++..
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp TT-HHHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 3467788899999999999999999988653
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.4e-09 Score=102.22 Aligned_cols=300 Identities=10% Similarity=0.027 Sum_probs=239.3
Q ss_pred HHHHHHHH--cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 009506 113 TLIKLYGT--AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 190 (533)
Q Consensus 113 ~li~~~~~--~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 190 (533)
.+..+..+ .|+|.+|.++..+-.+.+-.| ...|-.-..+.-+.|+.+.+-..+.+..+.--.++...+-+..+....
T Consensus 87 ~~~egl~~l~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~ 165 (400)
T COG3071 87 ALNEGLLKLFEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLN 165 (400)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHh
Confidence 34444433 699999999999987766443 334555566777889999999999999886335667777788888899
Q ss_pred cCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC------CHHHHHHHHHHHHhcCC
Q 009506 191 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP------DSWTFSSMITICSCRGK 264 (533)
Q Consensus 191 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p------~~~~~~~li~~~~~~g~ 264 (533)
.|+++.|..-++++.+.+.. +..+......+|.+.|++.....++..+.+.+.+.+ ...+|+.+++-....+.
T Consensus 166 ~~d~~aA~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~ 244 (400)
T COG3071 166 RRDYPAARENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNG 244 (400)
T ss_pred CCCchhHHHHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999988766 778889999999999999999999999999986333 24567888888777777
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHH
Q 009506 265 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVEC 343 (533)
Q Consensus 265 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~ 343 (533)
.+.-...|+.... ..+-++..-..++.-+.+.|+.++|.++.++..+.+..|. .. .+-.+.+.++ +...+..+.
T Consensus 245 ~~gL~~~W~~~pr-~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~-~~~~~l~~~d~~~l~k~~e~ 319 (400)
T COG3071 245 SEGLKTWWKNQPR-KLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LC-RLIPRLRPGDPEPLIKAAEK 319 (400)
T ss_pred chHHHHHHHhccH-HhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HH-HHHhhcCCCCchHHHHHHHH
Confidence 7776677776543 2345666777888899999999999999999988887766 22 2223445555 888888888
Q ss_pred HHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhc-cCccchhhHHHHHHHHhcCCHHHHHHHHHHHHhccccCCc
Q 009506 344 VEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSIS-KDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDI 420 (533)
Q Consensus 344 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~ 420 (533)
..+..|+.......|+..|.+.+.| .+|.+.|+... ..++...|+-+.+++.+.|++++|.++.++.+..-..|+.
T Consensus 320 ~l~~h~~~p~L~~tLG~L~~k~~~w-~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~~ 396 (400)
T COG3071 320 WLKQHPEDPLLLSTLGRLALKNKLW-GKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPNL 396 (400)
T ss_pred HHHhCCCChhHHHHHHHHHHHhhHH-HHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCC
Confidence 8888888888889999999999987 89999998654 4678889999999999999999999999998765555554
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.6e-09 Score=114.60 Aligned_cols=318 Identities=12% Similarity=0.049 Sum_probs=239.4
Q ss_pred HHhhHHHHHhhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 009506 91 KEKSYDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 170 (533)
Q Consensus 91 ~~~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~ 170 (533)
.+..++..+.+.... |+..+..++..|.+.++.++|++.++++... .|+...+-.++..+...++..+|++.++++.
T Consensus 120 ~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 120 QALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 456666666655433 4677778899999999999999999999874 5776666555445545677767999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH-----------------------------------------------
Q 009506 171 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE----------------------------------------------- 203 (533)
Q Consensus 171 ~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~----------------------------------------------- 203 (533)
+.. +-+...+..++.++.+.|-...|.++..+
T Consensus 197 ~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~ 275 (822)
T PRK14574 197 RLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQ 275 (822)
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHH
Confidence 875 44677888888888887755444444332
Q ss_pred -HHH-cCCCcC-HHH----HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009506 204 -MKE-KGMQLS-VTL----YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 276 (533)
Q Consensus 204 -m~~-~g~~~~-~~~----~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 276 (533)
+.. .+-.|. ... .--.+-++...|++.++++.|+.+...+. +....+-..+.++|...++.++|..+|+.+.
T Consensus 276 ~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~-~~P~y~~~a~adayl~~~~P~kA~~l~~~~~ 354 (822)
T PRK14574 276 NLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGY-KMPDYARRWAASAYIDRRLPEKAAPILSSLY 354 (822)
T ss_pred HHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCC-CCCHHHHHHHHHHHHhcCCcHHHHHHHHHHh
Confidence 221 011121 111 11234567788999999999999998885 4456688899999999999999999999986
Q ss_pred HcC-----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCC-----------CCCHH---HHHHHHHHHhcCCh-HH
Q 009506 277 EAG-----FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI-----------TPDDR---FCGCLLNVMTQTPK-EE 336 (533)
Q Consensus 277 ~~g-----~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-----------~p~~~---~~~~ll~~~~~~~~-~~ 336 (533)
... ..++......|.-+|...+++++|..+++++.+... .|++. .+..++..+...|+ .+
T Consensus 355 ~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~ 434 (822)
T PRK14574 355 YSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPT 434 (822)
T ss_pred hccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHH
Confidence 642 233455567899999999999999999999987311 23332 34556777788899 99
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhcc--CccchhhHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 009506 337 LGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK--DVKKAYCNCLIDLCVNLNLLENACKLLELGLTL 414 (533)
Q Consensus 337 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 414 (533)
|++.++.+....|....+...+...+...|.. .+|++.++.... +.+..+....+.++...|++++|..+.+...+.
T Consensus 435 Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p-~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 435 AQKKLEDLSSTAPANQNLRIALASIYLARDLP-RKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999965 999999977553 335557778888899999999999999877654
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.3e-09 Score=119.20 Aligned_cols=299 Identities=10% Similarity=0.039 Sum_probs=227.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHC-C-CCCCHHHHHHHHHHHHhcCC---hhHHHHH----------------
Q 009506 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI-G-VKPNMITYNNLLDTMGRAKR---PWQVKTI---------------- 165 (533)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g-~~pd~~~~~~li~~~~~~g~---~~~a~~~---------------- 165 (533)
+....-.+--...+.|+.++|.++|+..... + ..++....+-|+..|.+.+. ..++..+
T Consensus 375 ~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 454 (987)
T PRK09782 375 NLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQL 454 (987)
T ss_pred CHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhh
Confidence 4444555555567899999999999998762 1 23355566688888887766 3333333
Q ss_pred ------HHHHHH-CCC-CC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 009506 166 ------YKEMTD-NGL-SP--NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 235 (533)
Q Consensus 166 ------~~~m~~-~g~-~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 235 (533)
++.... .+. ++ +...|..+..++.. ++.++|...+.+..... |+......+...+...|++++|...
T Consensus 455 ~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~ 531 (987)
T PRK09782 455 PGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAA 531 (987)
T ss_pred hhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHH
Confidence 111111 111 33 67788888888877 88999999888877663 5544444445555789999999999
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCC
Q 009506 236 FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 315 (533)
Q Consensus 236 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 315 (533)
|+++... .|+...+..+...+.+.|++++|.+.|++..+.. +.+...+..+...+...|++++|...|++..+.
T Consensus 532 ~rka~~~---~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l-- 605 (987)
T PRK09782 532 WQKISLH---DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI-- 605 (987)
T ss_pred HHHHhcc---CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--
Confidence 9998654 4555567777888999999999999999988764 223333434444555679999999999999875
Q ss_pred CCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhcc-C-ccchhhHHHH
Q 009506 316 TPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK-D-VKKAYCNCLI 392 (533)
Q Consensus 316 ~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~~-~-~~~~~~~~li 392 (533)
.|+...+..+..++.+.|+ ++|...++......|+.......++..+...|+. ++|++.|++... . .+...+..+.
T Consensus 606 ~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~-eeAi~~l~~AL~l~P~~~~a~~nLA 684 (987)
T PRK09782 606 APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDI-AQSREMLERAHKGLPDDPALIRQLA 684 (987)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 4677888899999999999 9999999999999999998889999999999987 999999988653 3 3566889999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcc
Q 009506 393 DLCVNLNLLENACKLLELGLTLE 415 (533)
Q Consensus 393 ~~~~~~g~~~~A~~l~~~m~~~g 415 (533)
.++...|++++|+..+++..+..
T Consensus 685 ~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 685 YVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcC
Confidence 99999999999999999987654
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.2e-09 Score=99.60 Aligned_cols=285 Identities=14% Similarity=0.104 Sum_probs=215.1
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCCh
Q 009506 121 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW------NTYASLLRAYGRARYG 194 (533)
Q Consensus 121 ~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~------~~~~~ll~~~~~~g~~ 194 (533)
.++.++|.++|-+|.+.. +-+..+--+|-+.|-+.|..|.|+++.+.+.++ ||. .....|.+-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 468999999999998732 224445567888999999999999999999874 442 3445667778899999
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHhcCChHHHHH
Q 009506 195 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD----SWTFSSMITICSCRGKVSEAEA 270 (533)
Q Consensus 195 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~ 270 (533)
|.|+++|..+.+.|.. -......|+..|-...+|++|+++-+++.+.+. .+. ...|.-|...+....+++.|..
T Consensus 124 DRAE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~-q~~~~eIAqfyCELAq~~~~~~~~d~A~~ 201 (389)
T COG2956 124 DRAEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGG-QTYRVEIAQFYCELAQQALASSDVDRARE 201 (389)
T ss_pred hHHHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCC-ccchhHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 9999999999886432 456778899999999999999999999888764 443 3456777778888899999999
Q ss_pred HHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcC
Q 009506 271 MFNEMLEAGFEPN-LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSN 348 (533)
Q Consensus 271 ~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~ 348 (533)
++.+..+.+ |+ +..-..+-+.+...|++..|.+.|+...+.+..--..+...|..+|.+.|+ ++...++..+.+..
T Consensus 202 ~l~kAlqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~ 279 (389)
T COG2956 202 LLKKALQAD--KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN 279 (389)
T ss_pred HHHHHHhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 999988754 33 333445567788999999999999999998866667789999999999999 88888877777655
Q ss_pred CChhHH--HHHHHHhhhhhccHHHHHHHH-HhhhccCccchhhHHHHHHHHhc---CCHHHHHHHHHHHHhcccc
Q 009506 349 SKLGYV--VKLLLEEQDIEGDFKKEATEL-FNSISKDVKKAYCNCLIDLCVNL---NLLENACKLLELGLTLEVY 417 (533)
Q Consensus 349 ~~~~~~--~~~l~~~~~~~g~~~~~a~~~-~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~l~~~m~~~g~~ 417 (533)
+..... +.-++. ...| . +.|..+ .+.+..+|+...+..||+.-... |...+...+++.|...-+.
T Consensus 280 ~g~~~~l~l~~lie--~~~G-~-~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~ 350 (389)
T COG2956 280 TGADAELMLADLIE--LQEG-I-DAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLR 350 (389)
T ss_pred CCccHHHHHHHHHH--HhhC-h-HHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHh
Confidence 544433 322222 2234 2 555554 46677889999888999876543 4566677778877655443
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.5e-09 Score=118.72 Aligned_cols=260 Identities=14% Similarity=0.066 Sum_probs=197.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009506 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 186 (533)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 186 (533)
++..|..+..++.. ++.++|+..|.+.... .|+......+..++...|++++|+..|+++... .|+...+..+..
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~ 550 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAAN 550 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHH
Confidence 67788888888877 7888899988877664 466554444455556899999999999987654 455556667778
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChH
Q 009506 187 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 266 (533)
Q Consensus 187 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 266 (533)
.+.+.|+.++|...+++..+.+.. +...+..+.....+.|++++|+..+++..+. .|+...|..+..++.+.|+++
T Consensus 551 all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l---~P~~~a~~~LA~~l~~lG~~d 626 (987)
T PRK09782 551 TAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPELALNDLTRSLNI---APSANAYVARATIYRQRHNVP 626 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHCCCHH
Confidence 888999999999999998887532 3333334444555669999999999998875 567888999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHH
Q 009506 267 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVE 345 (533)
Q Consensus 267 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~ 345 (533)
+|...|++..+.. +.+...++.+..++...|+.++|+..|++..+... -+...+..+..++...|+ ++|...++.+.
T Consensus 627 eA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P-~~~~a~~nLA~al~~lGd~~eA~~~l~~Al 704 (987)
T PRK09782 627 AAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLP-DDPALIRQLAYVNQRLDDMAATQHYARLVI 704 (987)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999988753 33466777888889999999999999999887532 244577888889999999 99999999999
Q ss_pred hcCCChhHHHHHHHHhhhhhccHHHHHHHHHhh
Q 009506 346 KSNSKLGYVVKLLLEEQDIEGDFKKEATELFNS 378 (533)
Q Consensus 346 ~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~ 378 (533)
+..|+...+....+.......++ +.+.+-+++
T Consensus 705 ~l~P~~a~i~~~~g~~~~~~~~~-~~a~~~~~r 736 (987)
T PRK09782 705 DDIDNQALITPLTPEQNQQRFNF-RRLHEEVGR 736 (987)
T ss_pred hcCCCCchhhhhhhHHHHHHHHH-HHHHHHHHH
Confidence 98887766655555554444444 555554443
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.8e-12 Score=88.04 Aligned_cols=49 Identities=39% Similarity=0.666 Sum_probs=26.7
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009506 106 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 154 (533)
Q Consensus 106 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~ 154 (533)
||..+||++|++|++.|++++|.++|++|.+.|+.||..||++||++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555554
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.9e-12 Score=87.85 Aligned_cols=50 Identities=28% Similarity=0.551 Sum_probs=35.2
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 009506 141 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 190 (533)
Q Consensus 141 pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 190 (533)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+++|++|+|
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56677777777777777777777777777777777777777777776654
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.8e-10 Score=113.16 Aligned_cols=281 Identities=12% Similarity=0.050 Sum_probs=214.0
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChHHHHHH
Q 009506 123 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG--LSPNWNTYASLLRAYGRARYGEDTLSV 200 (533)
Q Consensus 123 ~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~g~~~~a~~~ 200 (533)
+..+|+..|+.+... +.-+..+...+..+|...+++++|.++|+.+.+.. ..-+..+|.+.+--+-+. -++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 678899999996654 22233555667789999999999999999998642 123668888887665432 22222
Q ss_pred H-HHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 009506 201 Y-REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 279 (533)
Q Consensus 201 ~-~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 279 (533)
+ +++.+.. +-...+|.++.++|.-+++.+.|++.|++....+ +....+|+.+..-+.....+|.|...|+..+.
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld--p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~-- 483 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD--PRFAYAYTLLGHESIATEEFDKAMKSFRKALG-- 483 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC--CccchhhhhcCChhhhhHHHHhHHHHHHhhhc--
Confidence 2 2333322 2267899999999999999999999999998854 34889999999999999999999999998765
Q ss_pred CCCCHHHHHH---HHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHHH
Q 009506 280 FEPNLFVLTS---LIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVV 355 (533)
Q Consensus 280 ~~p~~~~~~~---li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~ 355 (533)
.|...|++ |.-.|.+.++++.|.-.|++..+.+.. +.+....+...+.+.|. ++|..+++.+...+|......
T Consensus 484 --~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~ 560 (638)
T KOG1126|consen 484 --VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCK 560 (638)
T ss_pred --CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhH
Confidence 56666665 455789999999999999999876533 44566677778888888 999999999998888766544
Q ss_pred HHHHHhhhhhccHHHHHHHHHhhhcc--CccchhhHHHHHHHHhcCCHHHHHHHHHHHHhcccc
Q 009506 356 KLLLEEQDIEGDFKKEATELFNSISK--DVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVY 417 (533)
Q Consensus 356 ~~l~~~~~~~g~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 417 (533)
.--+..+...++. ++|+..++++.. ..+..++-.+...|.+.|+.+.|+.-|-.|.....+
T Consensus 561 ~~~~~il~~~~~~-~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 561 YHRASILFSLGRY-VEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHHHHhhcch-HHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 3334444444666 899999998875 235568888999999999999999988877665543
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.5e-09 Score=100.42 Aligned_cols=201 Identities=9% Similarity=0.035 Sum_probs=162.0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009506 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 186 (533)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 186 (533)
....+..+...|.+.|++++|.+.|++..+.. +.+...+..+...+...|++++|.+.|++..+.. +.+...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 35667888899999999999999999987653 3356778888889999999999999999988764 345677888888
Q ss_pred HHHhcCChHHHHHHHHHHHHcCC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCh
Q 009506 187 AYGRARYGEDTLSVYREMKEKGM-QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 265 (533)
Q Consensus 187 ~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 265 (533)
.|...|++++|.+.+++..+... ......+..+...+...|++++|.+.|++..... +.+...+..+...+...|++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID--PQRPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCChHHHHHHHHHHHHcCCH
Confidence 99999999999999999887532 2234567777888889999999999998887754 34567788888899999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 009506 266 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 312 (533)
Q Consensus 266 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 312 (533)
++|.+.+++..+. .+.+...+..+...+...|+.++|..+++.+..
T Consensus 186 ~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 186 KDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999988775 344567777778888888999999888877654
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.32 E-value=2e-09 Score=108.64 Aligned_cols=305 Identities=9% Similarity=-0.043 Sum_probs=207.1
Q ss_pred HHHHHHHH--HhcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 009506 146 YNNLLDTM--GRAKRPWQVKTIYKEMTDNGLSPNW-NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 222 (533)
Q Consensus 146 ~~~li~~~--~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 222 (533)
+..+..+. ...|+++.|.+.+.+..+. .|+. ..+-....++.+.|+.+.|.+.+.+..+....+.....-.....
T Consensus 85 ~~~~~~glla~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l 162 (409)
T TIGR00540 85 QKQTEEALLKLAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRI 162 (409)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHH
Confidence 34444444 4579999999999887765 3554 34445567788899999999999998776433333444445788
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH-HHHHHH---HhcC
Q 009506 223 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT-SLIQCY---GKAQ 298 (533)
Q Consensus 223 ~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~li~~~---~~~g 298 (533)
+...|+++.|.+.++.+.+.. +-+...+..+...|.+.|++++|.+++..+.+.+.. +...+. .-..++ ...+
T Consensus 163 ~l~~~~~~~Al~~l~~l~~~~--P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~ 239 (409)
T TIGR00540 163 LLAQNELHAARHGVDKLLEMA--PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEA 239 (409)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999875 557788999999999999999999999999988754 333332 111222 2223
Q ss_pred ChhHHHHHHHHhhhCC---CCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHHH--HHHHHhhhhhccHHHHH
Q 009506 299 RTDDVVRALNRLPELG---ITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVV--KLLLEEQDIEGDFKKEA 372 (533)
Q Consensus 299 ~~~~a~~~~~~m~~~g---~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~~a 372 (533)
..++..+.+..+.+.. .+.+...+..+...+...|+ ++|.++++...+..|+..... .+........++. +.+
T Consensus 240 ~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~-~~~ 318 (409)
T TIGR00540 240 MADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDN-EKL 318 (409)
T ss_pred HHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCCh-HHH
Confidence 3333333444443322 12377788889999999999 999999999999888776421 1111111222443 667
Q ss_pred HHHHhhhcc-Cc-cc--hhhHHHHHHHHhcCCHHHHHHHHHHHHhccccCCccccCccceeecccccC-hhhHHHHHHHH
Q 009506 373 TELFNSISK-DV-KK--AYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLS-LGAALTALHIW 447 (533)
Q Consensus 373 ~~~~~~~~~-~~-~~--~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~~~~~~l~~~~-~g~~~~a~~~~ 447 (533)
.+.+++..+ .| +. ....++...|.+.|++++|.+.|+........|+... +..+...+. .|...+|.+.|
T Consensus 319 ~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-----~~~La~ll~~~g~~~~A~~~~ 393 (409)
T TIGR00540 319 EKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-----LAMAADAFDQAGDKAEAAAMR 393 (409)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-----HHHHHHHHHHcCCHHHHHHHH
Confidence 777766542 33 44 5667999999999999999999996544444555433 112222233 38888999999
Q ss_pred HHHHHHHHHcCCCC
Q 009506 448 INDLSKALESGEEF 461 (533)
Q Consensus 448 ~~~l~~~~~~g~~~ 461 (533)
.+.+.-++-.++..
T Consensus 394 ~~~l~~~~~~~~~~ 407 (409)
T TIGR00540 394 QDSLGLMLAIQDNI 407 (409)
T ss_pred HHHHHHHhcccccC
Confidence 76666554444443
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.7e-09 Score=96.54 Aligned_cols=201 Identities=11% Similarity=0.038 Sum_probs=152.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 009506 142 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 221 (533)
Q Consensus 142 d~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 221 (533)
....+..+...+...|++++|.+.+++..+.. +.+...+..+...|...|++++|.+.+++..+.... +...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHH
Confidence 45667788888899999999999999888753 345678888888999999999999999988876543 5667778888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh
Q 009506 222 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 301 (533)
Q Consensus 222 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 301 (533)
.+...|++++|.+.|++.............+..+...+...|++++|.+.|.+..+.. +.+...+..+...+...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHH
Confidence 8899999999999999887643212345567778888899999999999999887643 234667888888888999999
Q ss_pred HHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHh
Q 009506 302 DVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEK 346 (533)
Q Consensus 302 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~ 346 (533)
+|...+++..+. ...+...+..+...+...|+ +++..+.+.+.+
T Consensus 187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 999999988776 23344555556666666666 666665555443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.26 E-value=2e-09 Score=107.30 Aligned_cols=262 Identities=13% Similarity=0.082 Sum_probs=201.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHH-HHHHCCCCCCHHHHHH
Q 009506 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG--VKPNMITYNNLLDTMGRAKRPWQVKTIYK-EMTDNGLSPNWNTYAS 183 (533)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~pd~~~~~~li~~~~~~g~~~~a~~~~~-~m~~~g~~p~~~~~~~ 183 (533)
+..+...+.++|...+++++|.++|+.+++.. ..-+..+|.+.+.-+-+ +-++..+- .+.+. -+-.+.+|-+
T Consensus 352 t~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~Laq~Li~~-~~~sPesWca 426 (638)
T KOG1126|consen 352 TGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYLAQDLIDT-DPNSPESWCA 426 (638)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHHHHHHHhh-CCCCcHHHHH
Confidence 44667778899999999999999999998742 11377889888875532 12222222 22222 1345789999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC
Q 009506 184 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 263 (533)
Q Consensus 184 ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 263 (533)
+-++|.-.++.+.|++.|++..+.+.. ...+|+.+..-+.....+|.|...|+...... ..+-..|.-|.-.|.+.+
T Consensus 427 ~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~--~rhYnAwYGlG~vy~Kqe 503 (638)
T KOG1126|consen 427 LGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVD--PRHYNAWYGLGTVYLKQE 503 (638)
T ss_pred hcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCC--chhhHHHHhhhhheeccc
Confidence 999999999999999999999887433 78899999999999999999999999887533 234556667788999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHH
Q 009506 264 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVE 342 (533)
Q Consensus 264 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~ 342 (533)
+++.|+-.|++..+.+ +-+.+....+...+-+.|+.|+|+++|++.....-+--..-|. -...+...++ ++|.+.++
T Consensus 504 k~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~-~~~il~~~~~~~eal~~LE 581 (638)
T KOG1126|consen 504 KLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYH-RASILFSLGRYVEALQELE 581 (638)
T ss_pred hhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHH-HHHHHHhhcchHHHHHHHH
Confidence 9999999999988754 2345666677778889999999999999987765442223344 3344445555 99999999
Q ss_pred HHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhh
Q 009506 343 CVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI 379 (533)
Q Consensus 343 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~ 379 (533)
++++.-|+...+..+++..|.+.|+. +.|+.-|--+
T Consensus 582 eLk~~vP~es~v~~llgki~k~~~~~-~~Al~~f~~A 617 (638)
T KOG1126|consen 582 ELKELVPQESSVFALLGKIYKRLGNT-DLALLHFSWA 617 (638)
T ss_pred HHHHhCcchHHHHHHHHHHHHHHccc-hHHHHhhHHH
Confidence 99999999999999999999999977 7777666543
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.26 E-value=9.9e-09 Score=97.98 Aligned_cols=252 Identities=13% Similarity=0.081 Sum_probs=124.3
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CC-CCHHHHHHHHHHHHhcCC
Q 009506 116 KLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG-LS-PNWNTYASLLRAYGRARY 193 (533)
Q Consensus 116 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~-p~~~~~~~ll~~~~~~g~ 193 (533)
.+|-...+.++++.-.+.....|+.-+...-+....+.....++++|+.+|+++++.. .+ -|..+|+.++-.-....+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 3444556777788888888877776555555555555667788999999999998763 11 245666655433222111
Q ss_pred hH-HHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 009506 194 GE-DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMF 272 (533)
Q Consensus 194 ~~-~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 272 (533)
+. .|..+++ . ..+ -..|...+.+-|.-.++.++|...|++..+.+ +.....|+.+..-|...++...|.+-+
T Consensus 315 Ls~LA~~v~~-i--dKy--R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN--p~~~~aWTLmGHEyvEmKNt~AAi~sY 387 (559)
T KOG1155|consen 315 LSYLAQNVSN-I--DKY--RPETCCIIANYYSLRSEHEKAVMYFKRALKLN--PKYLSAWTLMGHEYVEMKNTHAAIESY 387 (559)
T ss_pred HHHHHHHHHH-h--ccC--CccceeeehhHHHHHHhHHHHHHHHHHHHhcC--cchhHHHHHhhHHHHHhcccHHHHHHH
Confidence 11 0111110 0 011 22344444444444455555555555544433 233444455555555555555555555
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCCh
Q 009506 273 NEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKL 351 (533)
Q Consensus 273 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~ 351 (533)
+...+-. +.|-..|-.|-++|.-.+...-|+-+|++..+.. .-|...|.+|-..|.+.++ ++|.+.+......+...
T Consensus 388 RrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte 465 (559)
T KOG1155|consen 388 RRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTE 465 (559)
T ss_pred HHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccc
Confidence 5444422 2234444455555555555555555555444321 1133345555555555444 55555555444444444
Q ss_pred hHHHHHHHHhhhhhccHHHHHHHHHh
Q 009506 352 GYVVKLLLEEQDIEGDFKKEATELFN 377 (533)
Q Consensus 352 ~~~~~~l~~~~~~~g~~~~~a~~~~~ 377 (533)
+..+.-|+..|.+.++. ++|...|.
T Consensus 466 ~~~l~~LakLye~l~d~-~eAa~~ye 490 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDL-NEAAQYYE 490 (559)
T ss_pred hHHHHHHHHHHHHHHhH-HHHHHHHH
Confidence 44444444444444433 44444443
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=2e-08 Score=100.90 Aligned_cols=260 Identities=9% Similarity=-0.023 Sum_probs=200.4
Q ss_pred HHHHHHH-HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 009506 108 PNAFSTL-IKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN--NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 184 (533)
Q Consensus 108 ~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~--~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 184 (533)
+..+-.+ .....+.|+++.|.+.|.++.+. .|+...+. .....+...|+++.|...++++.+.. +-+...+..+
T Consensus 117 p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll 193 (398)
T PRK10747 117 PVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLA 193 (398)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHH
Confidence 4444434 44448999999999999999874 46654433 33567889999999999999999875 4567889999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCcCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 009506 185 LRAYGRARYGEDTLSVYREMKEKGMQLSV-------TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 257 (533)
Q Consensus 185 l~~~~~~g~~~~a~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~ 257 (533)
...|.+.|++++|.+++..+.+.+...+. .+|..++.......+.+...++++.+.+.- +.+......+..
T Consensus 194 ~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~--~~~~~~~~~~A~ 271 (398)
T PRK10747 194 EQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKT--RHQVALQVAMAE 271 (398)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHH--hCCHHHHHHHHH
Confidence 99999999999999999999987655222 234444555555566777778887775542 568888999999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HH
Q 009506 258 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EE 336 (533)
Q Consensus 258 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~ 336 (533)
.+...|+.++|.+++.+..+. .++... .++.+....++.+++++..+...+.. .-|......+...|.+.++ ++
T Consensus 272 ~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~ 346 (398)
T PRK10747 272 HLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQE 346 (398)
T ss_pred HHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 999999999999999998774 455522 23444456699999999999988653 2345567788899999999 99
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhh
Q 009506 337 LGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI 379 (533)
Q Consensus 337 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~ 379 (533)
|.+.|+...+..|+...+ ..+...+...|+. ++|.+++++-
T Consensus 347 A~~~le~al~~~P~~~~~-~~La~~~~~~g~~-~~A~~~~~~~ 387 (398)
T PRK10747 347 ASLAFRAALKQRPDAYDY-AWLADALDRLHKP-EEAAAMRRDG 387 (398)
T ss_pred HHHHHHHHHhcCCCHHHH-HHHHHHHHHcCCH-HHHHHHHHHH
Confidence 999999999999887654 4677788888876 8898888764
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.5e-08 Score=88.97 Aligned_cols=279 Identities=17% Similarity=0.170 Sum_probs=205.8
Q ss_pred HHhhHHHHHhhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCChhHHHH
Q 009506 91 KEKSYDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM------ITYNNLLDTMGRAKRPWQVKT 164 (533)
Q Consensus 91 ~~~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~------~~~~~li~~~~~~g~~~~a~~ 164 (533)
++-.+|.+|.+ +-.-+..+.-+|-+.|.+.|..+.|+++.+.+.+. ||. ...-.|..-|...|-+|.|.+
T Consensus 53 KAvdlF~e~l~-~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~DRAE~ 128 (389)
T COG2956 53 KAVDLFLEMLQ-EDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLLDRAED 128 (389)
T ss_pred hHHHHHHHHHh-cCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 34455556665 22334555678999999999999999999999874 554 233445566788999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcC----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009506 165 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS----VTLYNTLLAMCADVGYTDEAFEIFEDMK 240 (533)
Q Consensus 165 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~ 240 (533)
+|..+.+.| ..-.....-|+..|-...++++|+++-+++.+.|-.+. ...|.-|...+....+.+.|..++.+..
T Consensus 129 ~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAl 207 (389)
T COG2956 129 IFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKAL 207 (389)
T ss_pred HHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 999998865 34556788899999999999999999999988765543 2346666677777889999999999988
Q ss_pred hCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHH
Q 009506 241 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 320 (533)
Q Consensus 241 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 320 (533)
+.+ +..+..--.+.+.+...|+++.|.+.++...+.+..--..+...|..+|.+.|+.++....+.++.+....++..
T Consensus 208 qa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~ 285 (389)
T COG2956 208 QAD--KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAE 285 (389)
T ss_pred hhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHH
Confidence 765 445556667788999999999999999999987644446788899999999999999999999998875555444
Q ss_pred HHHHHHHHH-hcCChHHHHHHHHHHHhcCCChhHHHHHHHHhhhhh--ccHHHHHHHHHhhh
Q 009506 321 FCGCLLNVM-TQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIE--GDFKKEATELFNSI 379 (533)
Q Consensus 321 ~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~~a~~~~~~~ 379 (533)
..+.... ...|.+.|...+..-.+..|+...+...+-...... |.. .+-+.+++.|
T Consensus 286 --l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~-k~sL~~lr~m 344 (389)
T COG2956 286 --LMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRA-KESLDLLRDM 344 (389)
T ss_pred --HHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccch-hhhHHHHHHH
Confidence 2222222 245557777777777778888877765554333222 323 3444455554
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.6e-08 Score=93.54 Aligned_cols=302 Identities=13% Similarity=0.020 Sum_probs=195.1
Q ss_pred cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-----------------------------H
Q 009506 102 EKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD-----------------------------T 152 (533)
Q Consensus 102 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~-----------------------------~ 152 (533)
.+...|+..+-.....+.+.|....|++.|......- +-.=..|-.|.. +
T Consensus 158 ~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a 236 (559)
T KOG1155|consen 158 CGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKA 236 (559)
T ss_pred hcccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHH
Confidence 3445566666666666777888888888887766521 111112221111 1
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--cCHHHHHHHHHHHHhcCCHH
Q 009506 153 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ--LSVTLYNTLLAMCADVGYTD 230 (533)
Q Consensus 153 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~--~~~~~~~~li~~~~~~g~~~ 230 (533)
+-.....++++.=.+.....|++-+...-+-...+.-...++++|+.+|+++.+..+- -|..+|..++-.--.+..+.
T Consensus 237 ~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs 316 (559)
T KOG1155|consen 237 YQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLS 316 (559)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHH
Confidence 1122233333333333444444333333333333333444555555555555544210 03344444432221111111
Q ss_pred -HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 009506 231 -EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 309 (533)
Q Consensus 231 -~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 309 (533)
-|..+++ .+ +--..|..++.+-|+-.++.++|...|++..+.+ +.....|+.|-.-|....+...|.+.++.
T Consensus 317 ~LA~~v~~----id--KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 317 YLAQNVSN----ID--KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred HHHHHHHH----hc--cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 1111111 11 1223344566677888899999999999988754 22367788888999999999999999999
Q ss_pred hhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhccCccc--h
Q 009506 310 LPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKK--A 386 (533)
Q Consensus 310 m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~~~~~~--~ 386 (533)
.++-+ +-|-..|-.|-++|.-.+. .-|.-.|+......|....++..|+.+|.+.++. ++|.+.|++.-.-.|+ .
T Consensus 390 Avdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~-~eAiKCykrai~~~dte~~ 467 (559)
T KOG1155|consen 390 AVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRL-EEAIKCYKRAILLGDTEGS 467 (559)
T ss_pred HHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccH-HHHHHHHHHHHhccccchH
Confidence 98754 3366689999999999998 9999999999999999999999999999999987 9999999987654554 6
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009506 387 YCNCLIDLCVNLNLLENACKLLELGLT 413 (533)
Q Consensus 387 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 413 (533)
.+..|...|-+.++.++|...|++-.+
T Consensus 468 ~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 468 ALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 899999999999999999998887654
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.8e-08 Score=100.02 Aligned_cols=323 Identities=15% Similarity=0.128 Sum_probs=238.8
Q ss_pred chhhhhHHhhHHHHHhhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 009506 85 PRASKLKEKSYDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 164 (533)
Q Consensus 85 ~~~~~~~~~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~ 164 (533)
.+.+...+..++.++++.. ..+...|.+|...|-+.|+.++++..+-..-.. .+-|..-|-.+-....+.|++++|.-
T Consensus 151 arg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL-~p~d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL-NPKDYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred HhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHhcccHHHHHH
Confidence 3444556677777777654 456778999999999999999998877444332 23477889888888899999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHH----HHHHHHhcCCHHHHHHHHHHHH
Q 009506 165 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNT----LLAMCADVGYTDEAFEIFEDMK 240 (533)
Q Consensus 165 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~----li~~~~~~g~~~~A~~~~~~m~ 240 (533)
.|.+.++.. +++...+---+..|-+.|+...|...|.++.......|..-+.. ++..+...++-+.|.+.++...
T Consensus 229 cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~ 307 (895)
T KOG2076|consen 229 CYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGAL 307 (895)
T ss_pred HHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999875 56666666778889999999999999999988754333333333 3455667777799999998877
Q ss_pred hCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC---------------------------CCCCHHHHHHHHHH
Q 009506 241 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG---------------------------FEPNLFVLTSLIQC 293 (533)
Q Consensus 241 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---------------------------~~p~~~~~~~li~~ 293 (533)
..+.-..+...++.++..|.+...++.|......+.... +.++...+ .+.-+
T Consensus 308 s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~ic 386 (895)
T KOG2076|consen 308 SKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMIC 386 (895)
T ss_pred hhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhhh
Confidence 643225567788899999999999999999888776522 22222231 23334
Q ss_pred HHhcCChhHHHHHHHHhhhCCCCC--CHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHHH-HHHHHhhhhhccHH
Q 009506 294 YGKAQRTDDVVRALNRLPELGITP--DDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVV-KLLLEEQDIEGDFK 369 (533)
Q Consensus 294 ~~~~g~~~~a~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~ 369 (533)
+.+....+....+...+.+.++.| +...|.-+..++.+.|. .+|..++..+....+....++ .-++.+|...|..
T Consensus 387 L~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~- 465 (895)
T KOG2076|consen 387 LVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEY- 465 (895)
T ss_pred hhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhH-
Confidence 455555555666666666666444 44588889999999999 999999999887666555554 7788888888877
Q ss_pred HHHHHHHhhhcc-Cc-cchhhHHHHHHHHhcCCHHHHHHHHHHHH
Q 009506 370 KEATELFNSISK-DV-KKAYCNCLIDLCVNLNLLENACKLLELGL 412 (533)
Q Consensus 370 ~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 412 (533)
++|.+.|++... .| +...--+|...|.+.|+.|+|.+.++.|.
T Consensus 466 e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 466 EEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 999999988753 22 44455678888999999999999999875
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.1e-08 Score=107.16 Aligned_cols=262 Identities=12% Similarity=-0.038 Sum_probs=178.6
Q ss_pred CCHHHHHHHHHHHHh-----cCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH---------hcCChHHHHHHHHHHH
Q 009506 141 PNMITYNNLLDTMGR-----AKRPWQVKTIYKEMTDNGLSPN-WNTYASLLRAYG---------RARYGEDTLSVYREMK 205 (533)
Q Consensus 141 pd~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~---------~~g~~~~a~~~~~~m~ 205 (533)
.+...|...+.+-.. .+..++|+.+|++..+.. |+ ...|..+..+|. ..+++++|...+++..
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld--P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS--PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 345556666655322 234567888888888753 43 455655555443 2244788899998888
Q ss_pred HcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-
Q 009506 206 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL- 284 (533)
Q Consensus 206 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~- 284 (533)
+.+.. +...+..+...+...|++++|+..|++..+.+ +.+...+..+...|...|++++|...+++..+.. |+.
T Consensus 332 ~ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~ 406 (553)
T PRK12370 332 ELDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLS--PISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRA 406 (553)
T ss_pred hcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCh
Confidence 87654 67778888888888899999999999888764 4567778888888999999999999999987753 442
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhh
Q 009506 285 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQD 363 (533)
Q Consensus 285 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 363 (533)
..+..++..+...|++++|...++++.+....-+...+..+..++...|+ ++|...+..+....+........+...|.
T Consensus 407 ~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~ 486 (553)
T PRK12370 407 AAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYC 486 (553)
T ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHh
Confidence 23334444566688899999998887765322234456667777778888 88988888887777776666677777777
Q ss_pred hhccHHHHHHHHHhhhcc----CccchhhHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 009506 364 IEGDFKKEATELFNSISK----DVKKAYCNCLIDLCVNLNLLENACKLLELGLTLE 415 (533)
Q Consensus 364 ~~g~~~~~a~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 415 (533)
..| ++|...++.+.. .+....+ +-..|.-.|+.+.+..+ +++.+.+
T Consensus 487 ~~g---~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 487 QNS---ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred ccH---HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 666 355555555432 2222233 45556677887777776 7776554
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.1e-08 Score=102.31 Aligned_cols=232 Identities=9% Similarity=-0.013 Sum_probs=168.0
Q ss_pred CCHHHHHHHHHHHHH-----cCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH---------hcCChhHHHHHHHHHH
Q 009506 106 IDPNAFSTLIKLYGT-----AGNFDGCLNVYEEMKAIGVKPN-MITYNNLLDTMG---------RAKRPWQVKTIYKEMT 170 (533)
Q Consensus 106 ~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~pd-~~~~~~li~~~~---------~~g~~~~a~~~~~~m~ 170 (533)
.+...|...+++-.. .+++++|+++|++..+. .|+ ...|..+..++. ..+++++|...+++..
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 355666666666422 23567999999999874 454 445555544443 2345789999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHH
Q 009506 171 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 250 (533)
Q Consensus 171 ~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~ 250 (533)
+.. +-+...+..+...+...|++++|...|++..+.+.. +...|..+...+...|++++|+..+++..+.. +.+..
T Consensus 332 ~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~ 407 (553)
T PRK12370 332 ELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAA 407 (553)
T ss_pred hcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChh
Confidence 865 456788888888999999999999999999988644 67788888999999999999999999998864 22333
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHH-HHHHHHHHH
Q 009506 251 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR-FCGCLLNVM 329 (533)
Q Consensus 251 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~ 329 (533)
.+..++..+...|++++|...++++.+..-+-+...+..+..+|...|+.++|...+.++... .|+.. ..+.+...+
T Consensus 408 ~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~ 485 (553)
T PRK12370 408 AGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEY 485 (553)
T ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHH
Confidence 444455567778999999999999876532224556777888889999999999999987654 34444 344555566
Q ss_pred hcCChHHHHHHHHHHHh
Q 009506 330 TQTPKEELGKLVECVEK 346 (533)
Q Consensus 330 ~~~~~~~a~~~~~~~~~ 346 (533)
...|+ .+...++.+.+
T Consensus 486 ~~~g~-~a~~~l~~ll~ 501 (553)
T PRK12370 486 CQNSE-RALPTIREFLE 501 (553)
T ss_pred hccHH-HHHHHHHHHHH
Confidence 66664 55554444443
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.3e-09 Score=111.36 Aligned_cols=225 Identities=18% Similarity=0.190 Sum_probs=161.8
Q ss_pred hhHHHHHhhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 009506 93 KSYDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN 172 (533)
Q Consensus 93 ~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 172 (533)
..++..+...|+.|+-+||..+|.-|+..|+.+.|- +|.-|.......+...|+.++.+...+++.+.+.
T Consensus 10 tnfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk--------- 79 (1088)
T KOG4318|consen 10 TNFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK--------- 79 (1088)
T ss_pred chHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC---------
Confidence 356678999999999999999999999999999999 9998887766777777888888877777776665
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHH---HHHHHHHHH----HcCC-----------------CcCHH----------HHHH
Q 009506 173 GLSPNWNTYASLLRAYGRARYGED---TLSVYREMK----EKGM-----------------QLSVT----------LYNT 218 (533)
Q Consensus 173 g~~p~~~~~~~ll~~~~~~g~~~~---a~~~~~~m~----~~g~-----------------~~~~~----------~~~~ 218 (533)
.|-..||+.|+.+|...|++.. +++.+..+. ..|+ -||.. .|..
T Consensus 80 --ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaq 157 (1088)
T KOG4318|consen 80 --EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQ 157 (1088)
T ss_pred --CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHH
Confidence 5777788888888888877654 222111111 1121 11211 1222
Q ss_pred HHHHHHhc------C-----------CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 009506 219 LLAMCADV------G-----------YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE 281 (533)
Q Consensus 219 li~~~~~~------g-----------~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 281 (533)
++....++ + +..-.+++....+ .+.-.|+..+|.+++..-...|+.+.|..++.+|.+.|++
T Consensus 158 llkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~ck-sl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfp 236 (1088)
T KOG4318|consen 158 LLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCK-SLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFP 236 (1088)
T ss_pred HHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHH-HhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCC
Confidence 22222111 1 0111122222222 2221589999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCC
Q 009506 282 PNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTP 333 (533)
Q Consensus 282 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 333 (533)
.+.+-|-.|+-+ .+...-+..+++-|.+.|+.|+..|+...+..+...|
T Consensus 237 ir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~ 285 (1088)
T KOG4318|consen 237 IRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNG 285 (1088)
T ss_pred cccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcch
Confidence 999888888876 7888889999999999999999999988777777643
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.4e-09 Score=101.60 Aligned_cols=215 Identities=14% Similarity=0.163 Sum_probs=138.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHH------------------------------------HHHHhcCCh
Q 009506 222 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI------------------------------------TICSCRGKV 265 (533)
Q Consensus 222 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li------------------------------------~~~~~~g~~ 265 (533)
.|.+.|+++.|.++++-+.+... +.-...-+.|- +.-..+|++
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdn-k~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDN-KTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccc-hhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcH
Confidence 47889999999998887776442 21111111110 011225788
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHH
Q 009506 266 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECV 344 (533)
Q Consensus 266 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~ 344 (533)
++|.+.|++.....-.-....||+= -.+-..|++++|++.|-++... +..+..+...+.+.|-...+ .+|.+++-+.
T Consensus 507 dka~~~ykeal~ndasc~ealfnig-lt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~ 584 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDASCTEALFNIG-LTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQA 584 (840)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHhc-ccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 8888888887653221122223322 2456778999999988877532 22345566667777776666 7888888887
Q ss_pred HhcCCChhHHHHHHHHhhhhhccHHHHHHHH-HhhhccCc-cchhhHHHHHHHHhcCCHHHHHHHHHHHHhccccCCccc
Q 009506 345 EKSNSKLGYVVKLLLEEQDIEGDFKKEATEL-FNSISKDV-KKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQS 422 (533)
Q Consensus 345 ~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~-~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~ 422 (533)
...-|+...+++-|.+.|.+.|+. .+|.+. ++...--| +..+...|..-|....-+++|+..|++.. -++|+
T Consensus 585 ~slip~dp~ilskl~dlydqegdk-sqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaa--liqp~--- 658 (840)
T KOG2003|consen 585 NSLIPNDPAILSKLADLYDQEGDK-SQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAA--LIQPN--- 658 (840)
T ss_pred cccCCCCHHHHHHHHHHhhcccch-hhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--hcCcc---
Confidence 777788888888889999888876 556554 44444323 45566667777788888889999888653 23344
Q ss_pred cCccceeecccccCh--hhHHHHHHHH
Q 009506 423 RSPTQWSLHLKSLSL--GAALTALHIW 447 (533)
Q Consensus 423 ~~~~~~~~~l~~~~~--g~~~~a~~~~ 447 (533)
...|.+++..+-. |.-+.|+..+
T Consensus 659 --~~kwqlmiasc~rrsgnyqka~d~y 683 (840)
T KOG2003|consen 659 --QSKWQLMIASCFRRSGNYQKAFDLY 683 (840)
T ss_pred --HHHHHHHHHHHHHhcccHHHHHHHH
Confidence 4458887665543 8888888776
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.06 E-value=7.9e-08 Score=96.73 Aligned_cols=254 Identities=15% Similarity=0.140 Sum_probs=176.8
Q ss_pred HhhHHHHHhhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC-----CC-CCCHHH-HHHHHHHHHhcCChhHHHH
Q 009506 92 EKSYDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI-----GV-KPNMIT-YNNLLDTMGRAKRPWQVKT 164 (533)
Q Consensus 92 ~~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~pd~~~-~~~li~~~~~~g~~~~a~~ 164 (533)
.+.+..+-...+.+--..+...|...|...|+++.|..+++...+. |. .|.+.+ .+.+-..|...+++++|..
T Consensus 183 ~~~~~~~~~~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ 262 (508)
T KOG1840|consen 183 GLDIQAKGLGDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVN 262 (508)
T ss_pred HHHHHHHhcccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 3444444444444444556666999999999999999999987653 21 233322 2335567888999999999
Q ss_pred HHHHHHH-----CC-CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHc-----CC-CcCH-HHHHHHHHHHHhcCCHH
Q 009506 165 IYKEMTD-----NG-LSPN-WNTYASLLRAYGRARYGEDTLSVYREMKEK-----GM-QLSV-TLYNTLLAMCADVGYTD 230 (533)
Q Consensus 165 ~~~~m~~-----~g-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-----g~-~~~~-~~~~~li~~~~~~g~~~ 230 (533)
+|+++.. .| ..|. ..+++.|-.+|.+.|++++|...+++..+. |. .+.+ ..++.+...|+..++++
T Consensus 263 ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~E 342 (508)
T KOG1840|consen 263 LYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYE 342 (508)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchh
Confidence 9999874 22 1122 357778888899999999998888766542 21 2222 34566677788899999
Q ss_pred HHHHHHHHHHhCC--CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CC--CC-CHHHHHHHHHHHHhc
Q 009506 231 EAFEIFEDMKSSE--NCQPD----SWTFSSMITICSCRGKVSEAEAMFNEMLEA----GF--EP-NLFVLTSLIQCYGKA 297 (533)
Q Consensus 231 ~A~~~~~~m~~~~--~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~--~p-~~~~~~~li~~~~~~ 297 (533)
+|..+++...+.- .+.++ ..+++.|...|.+.|++++|+++|++.... +. .+ ....++.|...|.+.
T Consensus 343 ea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~ 422 (508)
T KOG1840|consen 343 EAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEEL 422 (508)
T ss_pred HHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHh
Confidence 9999987654321 01222 467899999999999999999999987642 11 12 245677888889999
Q ss_pred CChhHHHHHHHHhhh----CCC-CCCHH-HHHHHHHHHhcCCh-HHHHHHHHHHH
Q 009506 298 QRTDDVVRALNRLPE----LGI-TPDDR-FCGCLLNVMTQTPK-EELGKLVECVE 345 (533)
Q Consensus 298 g~~~~a~~~~~~m~~----~g~-~p~~~-~~~~ll~~~~~~~~-~~a~~~~~~~~ 345 (533)
++.++|.++|.+... .|. .|+.. +|..|...|.+.|+ +.|.++.+.+.
T Consensus 423 k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 423 KKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred cccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 999999998887533 332 23433 78888888888888 88888777655
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.5e-08 Score=91.12 Aligned_cols=235 Identities=17% Similarity=0.135 Sum_probs=126.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc
Q 009506 147 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 226 (533)
Q Consensus 147 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 226 (533)
+.|-.+|.+.|.+.+|.+.|+.-++. .|-+.||-.|-+.|.+..+.+.|+.+|.+-.+. ++-|+....-+...+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 44555566666666666666655544 345555555666666666666666666555544 111333333344555555
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 009506 227 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 306 (533)
Q Consensus 227 g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 306 (533)
++.++|.++++...+.. ..++.....+...|.-.++.+-|++.|+++.+.|+ -+...|+.+--+|.-.+++|.++..
T Consensus 304 ~~~~~a~~lYk~vlk~~--~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH--PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HhHHHHHHHHHHHHhcC--CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHH
Confidence 66666666665555443 33444555555555555666666666666665554 3455555555555555566655555
Q ss_pred HHHhhhCCCCCCHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhcc-C-cc
Q 009506 307 LNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK-D-VK 384 (533)
Q Consensus 307 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~~-~-~~ 384 (533)
|.+....--.|+.. ..++..|+......|++ .-|.+.|+-... + ..
T Consensus 381 f~RAlstat~~~~a-------------------------------aDvWYNlg~vaV~iGD~-nlA~rcfrlaL~~d~~h 428 (478)
T KOG1129|consen 381 FQRALSTATQPGQA-------------------------------ADVWYNLGFVAVTIGDF-NLAKRCFRLALTSDAQH 428 (478)
T ss_pred HHHHHhhccCcchh-------------------------------hhhhhccceeEEeccch-HHHHHHHHHHhccCcch
Confidence 55544433223222 11223333333344554 555555554322 2 23
Q ss_pred chhhHHHHHHHHhcCCHHHHHHHHHHHHhccccCCcc
Q 009506 385 KAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQ 421 (533)
Q Consensus 385 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~ 421 (533)
...+|.|.-.-.+.|++++|..+++.... +.|++.
T Consensus 429 ~ealnNLavL~~r~G~i~~Arsll~~A~s--~~P~m~ 463 (478)
T KOG1129|consen 429 GEALNNLAVLAARSGDILGARSLLNAAKS--VMPDMA 463 (478)
T ss_pred HHHHHhHHHHHhhcCchHHHHHHHHHhhh--hCcccc
Confidence 34677777777888888888888876544 335543
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.4e-06 Score=90.74 Aligned_cols=335 Identities=12% Similarity=0.039 Sum_probs=173.8
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH--HHH
Q 009506 106 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK--PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW--NTY 181 (533)
Q Consensus 106 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~~~ 181 (533)
-||+..+.|.+.|.-.|++..+..+..-+...... --...|--+..+|-..|++++|...|-+-.+.. +|. ..+
T Consensus 268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~~ 345 (1018)
T KOG2002|consen 268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLPL 345 (1018)
T ss_pred CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCccccc
Confidence 36777777888887788888888777776654211 112346667777777888888877776665532 333 334
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC----CHHHHHHHHHHH------------------
Q 009506 182 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG----YTDEAFEIFEDM------------------ 239 (533)
Q Consensus 182 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~m------------------ 239 (533)
.-|..+|.+.|+++.+...|+...+.... +..+...|...|+..+ ..+.|..++...
T Consensus 346 ~GlgQm~i~~~dle~s~~~fEkv~k~~p~-~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~ 424 (1018)
T KOG2002|consen 346 VGLGQMYIKRGDLEESKFCFEKVLKQLPN-NYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLL 424 (1018)
T ss_pred cchhHHHHHhchHHHHHHHHHHHHHhCcc-hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 45667777777777777777766654221 3333333333333332 222333332222
Q ss_pred -------------------HhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCCCH------HHHHHHH
Q 009506 240 -------------------KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA---GFEPNL------FVLTSLI 291 (533)
Q Consensus 240 -------------------~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~------~~~~~li 291 (533)
...+. .+.....|.+...+...|++++|...|+..... ...+|. .+--.+.
T Consensus 425 e~~d~~~sL~~~~~A~d~L~~~~~-~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNla 503 (1018)
T KOG2002|consen 425 EQTDPWASLDAYGNALDILESKGK-QIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLA 503 (1018)
T ss_pred HhcChHHHHHHHHHHHHHHHHcCC-CCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHH
Confidence 23333 345555566666666677777777777665443 111222 1122233
Q ss_pred HHHHhcCChhHHHHHHHHhhhCCCCCCHHH-HHHHHHHHhcC-Ch-HHHHHHHHHHHhcCCChhHHHH------------
Q 009506 292 QCYGKAQRTDDVVRALNRLPELGITPDDRF-CGCLLNVMTQT-PK-EELGKLVECVEKSNSKLGYVVK------------ 356 (533)
Q Consensus 292 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~-~~-~~a~~~~~~~~~~~~~~~~~~~------------ 356 (533)
..+-..++.+.|.+.|..+.+.. |.-+. |.-+. ++++. +. .++..++..+...+.......+
T Consensus 504 rl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~-~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~ 580 (1018)
T KOG2002|consen 504 RLLEELHDTEVAEEMYKSILKEH--PGYIDAYLRLG-CMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEW 580 (1018)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHC--chhHHHHHHhh-HHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhh
Confidence 34444555666666666655431 22221 11111 12211 11 4444444433322221111111
Q ss_pred ------------------------HHHHhhhhh-----------ccHHHHHHHHHhhhcc--CccchhhHHHHHHHHhcC
Q 009506 357 ------------------------LLLEEQDIE-----------GDFKKEATELFNSISK--DVKKAYCNCLIDLCVNLN 399 (533)
Q Consensus 357 ------------------------~l~~~~~~~-----------g~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~g 399 (533)
.|+..+... -...++|+++|.+.-. +.+...-|-+.-.++..|
T Consensus 581 ~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg 660 (1018)
T KOG2002|consen 581 KPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKG 660 (1018)
T ss_pred cccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhcc
Confidence 111111100 0122666667665543 223444466677778888
Q ss_pred CHHHHHHHHHHHHhccccCCccccCccceeecccccCh-hhHHHHHHHHHHHHHH
Q 009506 400 LLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSL-GAALTALHIWINDLSK 453 (533)
Q Consensus 400 ~~~~A~~l~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~-g~~~~a~~~~~~~l~~ 453 (533)
++.+|..+|.+.++... .....|-.+-+++.. |....|++.+..-+++
T Consensus 661 ~~~~A~dIFsqVrEa~~------~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkk 709 (1018)
T KOG2002|consen 661 RFSEARDIFSQVREATS------DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKK 709 (1018)
T ss_pred CchHHHHHHHHHHHHHh------hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888776654 122235445555554 7778887777655553
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.8e-06 Score=80.89 Aligned_cols=316 Identities=13% Similarity=0.126 Sum_probs=185.3
Q ss_pred HHhhHHHHHhhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHH
Q 009506 91 KEKSYDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM-ITYNNLLDTMGRAKRPWQVKTIYKEM 169 (533)
Q Consensus 91 ~~~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~~~~~li~~~~~~g~~~~a~~~~~~m 169 (533)
++++++.+..... ..+...|-.-+.+=.+++++..|..++++.... -|-+ ..|--.+..=-..|++..|.++|++-
T Consensus 91 RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaRqiferW 167 (677)
T KOG1915|consen 91 RARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGARQIFERW 167 (677)
T ss_pred HHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 6777887777655 456666777777777777777777777776653 1221 12333333334456666666666665
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----
Q 009506 170 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN----- 244 (533)
Q Consensus 170 ~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----- 244 (533)
.+ ..|+...|++.|+.=.+-..++.|..+|++..-. .|++.+|--....=.++|....|..+|+...+.-.
T Consensus 168 ~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~ 243 (677)
T KOG1915|consen 168 ME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEA 243 (677)
T ss_pred Hc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHH
Confidence 54 3566666666666666666666666666665543 35555555544444455555544444443322100
Q ss_pred --------------------------------------------------------------------------CCCCHH
Q 009506 245 --------------------------------------------------------------------------CQPDSW 250 (533)
Q Consensus 245 --------------------------------------------------------------------------~~p~~~ 250 (533)
-+-|-.
T Consensus 244 e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYD 323 (677)
T KOG1915|consen 244 EILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYD 323 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCch
Confidence 011222
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHH---HhcCChhHHHHHHHHhhh--------
Q 009506 251 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL-------FVLTSLIQCY---GKAQRTDDVVRALNRLPE-------- 312 (533)
Q Consensus 251 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~~~~~li~~~---~~~g~~~~a~~~~~~m~~-------- 312 (533)
+|--.++.--..|+.+...++|++.... ++|-. ..|..+=-++ ....+.+.+.++|+...+
T Consensus 324 sWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFt 402 (677)
T KOG1915|consen 324 SWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFT 402 (677)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccch
Confidence 2233344444456666666666665432 33311 1111111111 123445555555543322
Q ss_pred ----------------------------CCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhh
Q 009506 313 ----------------------------LGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQD 363 (533)
Q Consensus 313 ----------------------------~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 363 (533)
.|.-|...+|...|..-.+.+. +...++++...+.+|.....+.-.+..-.
T Consensus 403 FaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~ 482 (677)
T KOG1915|consen 403 FAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELET 482 (677)
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHH
Confidence 2455666666666666666666 77777777777777777666666666666
Q ss_pred hhccHHHHHHHHHhhhccCcc----chhhHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 009506 364 IEGDFKKEATELFNSISKDVK----KAYCNCLIDLCVNLNLLENACKLLELGLTLE 415 (533)
Q Consensus 364 ~~g~~~~~a~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 415 (533)
..|+. +.|..+|.-....|. ...|.+.|+.-...|..++|..+++.+++..
T Consensus 483 ~Lgdt-dRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 483 SLGDT-DRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred HhhhH-HHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 66877 999999988765552 3388899999999999999999999987653
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.01 E-value=6.1e-07 Score=86.57 Aligned_cols=190 Identities=14% Similarity=0.138 Sum_probs=102.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 009506 216 YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 295 (533)
Q Consensus 216 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 295 (533)
|--+..+|....+.++..+.|+.....+ +-|..+|..-..++.-.+++++|..=|++..... +-+...|.-+..+..
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~ld--p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Y 439 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAEDLD--PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAYIQLCCALY 439 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHhcC--CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHH
Confidence 3344445555555555666665555543 3344555555555555556666666666554421 112344444444555
Q ss_pred hcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChh-------HHH-HHHHHhhhhhc
Q 009506 296 KAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLG-------YVV-KLLLEEQDIEG 366 (533)
Q Consensus 296 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~-------~~~-~~l~~~~~~~g 366 (533)
+.++++++...|++.++. +.--+..|+-....+...++ +.|.+.++...+..|... ..+ ..++....+ +
T Consensus 440 r~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk-~ 517 (606)
T KOG0547|consen 440 RQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWK-E 517 (606)
T ss_pred HHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchh-h
Confidence 666666666666666553 33344566666666666666 666666666665554421 111 222222222 3
Q ss_pred cHHHHHHHHHhhhcc-Cc-cchhhHHHHHHHHhcCCHHHHHHHHHHH
Q 009506 367 DFKKEATELFNSISK-DV-KKAYCNCLIDLCVNLNLLENACKLLELG 411 (533)
Q Consensus 367 ~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m 411 (533)
++ .+|..++++..+ +| ....|.+|...-.+.|+.++|+++|++.
T Consensus 518 d~-~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 518 DI-NQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred hH-HHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 33 666666665432 22 3346666666677777777777777654
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.1e-06 Score=87.62 Aligned_cols=291 Identities=15% Similarity=0.114 Sum_probs=213.0
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 009506 118 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 197 (533)
Q Consensus 118 ~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 197 (533)
..-.|++++|.+++.+..... +.+...|-+|...|-..|+.+++...+-..-... +-|..-|..+-....+.|.++.|
T Consensus 149 lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHH
Confidence 334499999999999998763 4577899999999999999999987665544432 55778999999999999999999
Q ss_pred HHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHH----HHHHHHHHhcCChHHHHHHHH
Q 009506 198 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTF----SSMITICSCRGKVSEAEAMFN 273 (533)
Q Consensus 198 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~----~~li~~~~~~g~~~~A~~~~~ 273 (533)
.-.|.+.++.... +...+---...|-+.|+...|.+.|.++..... +.|..-+ -.++..|...++-+.|.+.+.
T Consensus 227 ~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p-~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le 304 (895)
T KOG2076|consen 227 RYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDP-PVDIERIEDLIRRVAHYFITHNERERAAKALE 304 (895)
T ss_pred HHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC-chhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999987544 555555667889999999999999999987642 2222222 344666777888899999988
Q ss_pred HHHHc-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCC---------------------------CCCCHHHHHHH
Q 009506 274 EMLEA-GFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG---------------------------ITPDDRFCGCL 325 (533)
Q Consensus 274 ~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g---------------------------~~p~~~~~~~l 325 (533)
..... +-..+...++.++..|.+...++.+.....++.... +.++..++. +
T Consensus 305 ~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~r-l 383 (895)
T KOG2076|consen 305 GALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIR-L 383 (895)
T ss_pred HHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHh-H
Confidence 87652 334566778899999999999999999888887622 222222312 1
Q ss_pred HHHHhcCCh-HHHHHHHHHHHhcCCChh---HHHHHHHHhhhhhccHHHHHHHHHhhhccCc---cchhhHHHHHHHHhc
Q 009506 326 LNVMTQTPK-EELGKLVECVEKSNSKLG---YVVKLLLEEQDIEGDFKKEATELFNSISKDV---KKAYCNCLIDLCVNL 398 (533)
Q Consensus 326 l~~~~~~~~-~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~~a~~~~~~~~~~~---~~~~~~~li~~~~~~ 398 (533)
.-++.+... +....+...+...+.... .++.-+.+++...|.. .+|+.+|..+...+ +..+|--+..+|...
T Consensus 384 ~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~-~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l 462 (895)
T KOG2076|consen 384 MICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKY-KEALRLLSPITNREGYQNAFVWYKLARCYMEL 462 (895)
T ss_pred hhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccH-HHHHHHHHHHhcCccccchhhhHHHHHHHHHH
Confidence 222223333 444444444444442222 2335567788888877 99999999887532 456899999999999
Q ss_pred CCHHHHHHHHHHHHhc
Q 009506 399 NLLENACKLLELGLTL 414 (533)
Q Consensus 399 g~~~~A~~l~~~m~~~ 414 (533)
|..++|.+.++..+..
T Consensus 463 ~e~e~A~e~y~kvl~~ 478 (895)
T KOG2076|consen 463 GEYEEAIEFYEKVLIL 478 (895)
T ss_pred hhHHHHHHHHHHHHhc
Confidence 9999999999988754
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.8e-05 Score=79.19 Aligned_cols=291 Identities=13% Similarity=0.060 Sum_probs=176.5
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH----HHCCCCCCHHH-----------
Q 009506 116 KLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM----TDNGLSPNWNT----------- 180 (533)
Q Consensus 116 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m----~~~g~~p~~~~----------- 180 (533)
-+|++..-|+.|..+++..++. ++-|..+|.+-...=-.+|+.+.+.+++++- ...|+..|..-
T Consensus 414 lAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~a 492 (913)
T KOG0495|consen 414 LALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDA 492 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhc
Confidence 3445555666666666666654 4556666655555555566666655555432 23444443333
Q ss_pred --------------------------HHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 009506 181 --------------------------YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFE 234 (533)
Q Consensus 181 --------------------------~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 234 (533)
|+.-...|.+.+.++-|..+|....+.- .-+...|......--..|..+....
T Consensus 493 gsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl~A 571 (913)
T KOG0495|consen 493 GSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLEA 571 (913)
T ss_pred CChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHHH
Confidence 3333344444445555555555554432 1244455555444445566677777
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCC
Q 009506 235 IFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 314 (533)
Q Consensus 235 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 314 (533)
+|++.... |+-....|-....-+-..|++..|..++.+..+.. +-+...|..-+.....+.+++.|..+|.+...
T Consensus 572 llqkav~~--~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~-- 646 (913)
T KOG0495|consen 572 LLQKAVEQ--CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARS-- 646 (913)
T ss_pred HHHHHHHh--CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--
Confidence 77766654 34456666666777777888888888888877754 22567788888888888888899888888765
Q ss_pred CCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhc-c-CccchhhHHH
Q 009506 315 ITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSIS-K-DVKKAYCNCL 391 (533)
Q Consensus 315 ~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~-~-~~~~~~~~~l 391 (533)
..|+...|.--++..-..+. ++|.++++...+.-|+..-++-+++..+.+.++. +.|.+.|..-. . +.....|-.|
T Consensus 647 ~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~i-e~aR~aY~~G~k~cP~~ipLWllL 725 (913)
T KOG0495|consen 647 ISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENI-EMAREAYLQGTKKCPNSIPLWLLL 725 (913)
T ss_pred cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHH-HHHHHHHHhccccCCCCchHHHHH
Confidence 45666666655555555666 8888888888888888777777777777666655 55555444322 1 1233455555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhc
Q 009506 392 IDLCVNLNLLENACKLLELGLTL 414 (533)
Q Consensus 392 i~~~~~~g~~~~A~~l~~~m~~~ 414 (533)
...--+.|++-+|..+|+..+-.
T Consensus 726 akleEk~~~~~rAR~ildrarlk 748 (913)
T KOG0495|consen 726 AKLEEKDGQLVRARSILDRARLK 748 (913)
T ss_pred HHHHHHhcchhhHHHHHHHHHhc
Confidence 55555555555555555554433
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.2e-06 Score=81.11 Aligned_cols=304 Identities=14% Similarity=0.045 Sum_probs=221.0
Q ss_pred CCCCHHHHHHHHHHHHHc--CChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-H
Q 009506 104 WRIDPNAFSTLIKLYGTA--GNFDGCLNVYEEMKAI-GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW-N 179 (533)
Q Consensus 104 ~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~-g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~ 179 (533)
..++..+....|.+++.+ ++...|..++-.+... -++-|++....+...+...|+.++|+..|++.+-.+ |+. .
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~ 267 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVE 267 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhh
Confidence 344555566677777654 5555555555444432 356688889999999999999999999999887542 433 2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 009506 180 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 259 (533)
Q Consensus 180 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~ 259 (533)
......-.+.+.|++++...+...+....- -+...|-.-........+++.|+.+-++....+ +.+...|-.-.+.+
T Consensus 268 ~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~-~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~--~r~~~alilKG~lL 344 (564)
T KOG1174|consen 268 AMDLYAVLLGQEGGCEQDSALMDYLFAKVK-YTASHWFVHAQLLYDEKKFERALNFVEKCIDSE--PRNHEALILKGRLL 344 (564)
T ss_pred hHHHHHHHHHhccCHhhHHHHHHHHHhhhh-cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC--cccchHHHhccHHH
Confidence 223333445677888888888777765421 133344444455556778999999988887654 45666666667788
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHH-HHHhc--CChHH
Q 009506 260 SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL-NVMTQ--TPKEE 336 (533)
Q Consensus 260 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll-~~~~~--~~~~~ 336 (533)
...|+.++|.-.|+...... +-+...|.-|+.+|...|++.+|..+-+...+. +.-+..+...+- ..|.- .+++.
T Consensus 345 ~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEK 422 (564)
T KOG1174|consen 345 IALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREK 422 (564)
T ss_pred HhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHH
Confidence 89999999999999865521 246889999999999999999998877665432 222344444331 33443 34499
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhc-cCccchhhHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 009506 337 LGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSIS-KDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLE 415 (533)
Q Consensus 337 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 415 (533)
|.++++.-.+.+|..-..+..+...+...|.. +++..++++.- ..+|....+.|.+.+...+.+++|++.|...+..+
T Consensus 423 AKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~-~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 423 AKKFAEKSLKINPIYTPAVNLIAELCQVEGPT-KDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHHHHhhhccCCccHHHHHHHHHHHHhhCcc-chHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 99999999999999999888888888888876 88888888765 45788899999999999999999999999877654
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.96 E-value=6.1e-06 Score=78.08 Aligned_cols=275 Identities=11% Similarity=0.064 Sum_probs=207.9
Q ss_pred hhHHHHHhhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 009506 93 KSYDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN 172 (533)
Q Consensus 93 ~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 172 (533)
..+..+..+.+..| ...|-.-+.+--+.|+.+.|-+.+.+..+..-.++...+-+........|+.+.|..-.+++.+.
T Consensus 104 Ekl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~ 182 (400)
T COG3071 104 EKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEM 182 (400)
T ss_pred HHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHh
Confidence 33333433444333 33466667777889999999999999988544567777778888899999999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 009506 173 GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS-------VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 245 (533)
Q Consensus 173 g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 245 (533)
+ +-+........++|.+.|++..+..++..|.+.|.--| ..+|+.+++-....+..+.-...+++...+-
T Consensus 183 ~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~l-- 259 (400)
T COG3071 183 T-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKL-- 259 (400)
T ss_pred C-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHh--
Confidence 6 56778899999999999999999999999999887544 3578888888777777777777777776653
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh-CCCCCCHHHHHH
Q 009506 246 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE-LGITPDDRFCGC 324 (533)
Q Consensus 246 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~~~~~ 324 (533)
+-+...-.+++.-+.++|+.++|.++..+..+.+..|+.. ..-.+.+-++...-++..++-.+ .+-. +..+.+
T Consensus 260 r~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h~~~--p~L~~t 333 (400)
T COG3071 260 RNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQHPED--PLLLST 333 (400)
T ss_pred hcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHhCCCC--hhHHHH
Confidence 5567777888899999999999999999988887777622 22344566777766666666543 3333 367778
Q ss_pred HHHHHhcCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhh
Q 009506 325 LLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI 379 (533)
Q Consensus 325 ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~ 379 (533)
|-..|.+.+. .+|...|+...+..++.... ..+...+.+.|+. .+|.+.++..
T Consensus 334 LG~L~~k~~~w~kA~~~leaAl~~~~s~~~~-~~la~~~~~~g~~-~~A~~~r~e~ 387 (400)
T COG3071 334 LGRLALKNKLWGKASEALEAALKLRPSASDY-AELADALDQLGEP-EEAEQVRREA 387 (400)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhcCCChhhH-HHHHHHHHHcCCh-HHHHHHHHHH
Confidence 8888888888 99999999887777765544 7778888888876 7777776653
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.95 E-value=9.4e-06 Score=81.21 Aligned_cols=308 Identities=11% Similarity=0.040 Sum_probs=231.8
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 009506 98 RARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP--NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS 175 (533)
Q Consensus 98 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--d~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 175 (533)
.+...|...|...|-.=...|-+.|..-.+..+.......|+.- -..||+.--..|.+.+.++-|..+|...++- ++
T Consensus 469 ~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp 547 (913)
T KOG0495|consen 469 ELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FP 547 (913)
T ss_pred HHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-cc
Confidence 34455666666666666666666666666666666665555432 1345666666777777778888888887764 34
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHH
Q 009506 176 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 255 (533)
Q Consensus 176 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~l 255 (533)
-+...|......=-..|..+....+|++....-.+ ....|-....-+-..|++..|..++.+.-+.. +-+...|-..
T Consensus 548 ~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pk-ae~lwlM~ake~w~agdv~~ar~il~~af~~~--pnseeiwlaa 624 (913)
T KOG0495|consen 548 CKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPK-AEILWLMYAKEKWKAGDVPAARVILDQAFEAN--PNSEEIWLAA 624 (913)
T ss_pred chhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC--CCcHHHHHHH
Confidence 45567777666666678899999999999886433 55566666677778899999999999988765 4478889999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHH-HHHHHHHHHhcCCh
Q 009506 256 ITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR-FCGCLLNVMTQTPK 334 (533)
Q Consensus 256 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~ 334 (533)
+..-..+.+++.|..+|.+.... .|+...|..-+....-.+..++|.+++++..+. .|+-. .|-.+-..+-+.++
T Consensus 625 vKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ 700 (913)
T KOG0495|consen 625 VKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMEN 700 (913)
T ss_pred HHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHH
Confidence 99999999999999999987664 478888877777777789999999999988764 45654 67777777777777
Q ss_pred -HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhc--cCccchhhHHHHHHHHhcCCHHHHHHHHHHH
Q 009506 335 -EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSIS--KDVKKAYCNCLIDLCVNLNLLENACKLLELG 411 (533)
Q Consensus 335 -~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 411 (533)
+.|..-+..=.+.-|.....+-+|...-.+.|+. -+|..+|++.. .+.+...|-..|.+-.+.|+.+.|..++.+.
T Consensus 701 ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~-~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakA 779 (913)
T KOG0495|consen 701 IEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQL-VRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKA 779 (913)
T ss_pred HHHHHHHHHhccccCCCCchHHHHHHHHHHHhcch-hhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7777777766667777777777777777777865 88999998765 3457789999999999999999999888877
Q ss_pred Hhc
Q 009506 412 LTL 414 (533)
Q Consensus 412 ~~~ 414 (533)
++.
T Consensus 780 LQe 782 (913)
T KOG0495|consen 780 LQE 782 (913)
T ss_pred HHh
Confidence 654
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.93 E-value=5.6e-08 Score=99.70 Aligned_cols=257 Identities=16% Similarity=0.119 Sum_probs=142.7
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 009506 129 NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 208 (533)
Q Consensus 129 ~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 208 (533)
.++..+...|+.||.+||..+|.-|+..|+.+.|- +|..|.-...+.+...++.++.+..++++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 45566777777777777888887777777777777 7777776666677777777777777777766655
Q ss_pred CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-cCCCCCHHHH
Q 009506 209 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE-AGFEPNLFVL 287 (533)
Q Consensus 209 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~ 287 (533)
.|...||+.|+.+|...||+.. ++..++ -...++..+...|.-.....++..+.- .++-||..+
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~-fe~veq------------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n- 144 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL-FEVVEQ------------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN- 144 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH-HHHHHH------------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH-
Confidence 5667777777777777777665 222222 112234455556665555555554322 234455433
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhhCCCC-CCHHHHHHHHHHHhcCCh--HHHHHHHHHHHhcCCChhHHHHHHHHhhhh
Q 009506 288 TSLIQCYGKAQRTDDVVRALNRLPELGIT-PDDRFCGCLLNVMTQTPK--EELGKLVECVEKSNSKLGYVVKLLLEEQDI 364 (533)
Q Consensus 288 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 364 (533)
.+......|.++.+++++..+...... |-.. +++-+..... ++...+.+...+ .++... +......-..
T Consensus 145 --~illlv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e-~~~s~~-l~a~l~~ala 216 (1088)
T KOG4318|consen 145 --AILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE-APTSET-LHAVLKRALA 216 (1088)
T ss_pred --HHHHHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhc-CCChHH-HHHHHHHHHh
Confidence 333445566677777777666433211 1111 2333332222 222222222222 222222 2333333334
Q ss_pred hccHHHHHHHHHhhhccCc---cchhhHHHHHHHHhcCCHHHHHHHHHHHHhccccCCcccc
Q 009506 365 EGDFKKEATELFNSISKDV---KKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSR 423 (533)
Q Consensus 365 ~g~~~~~a~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~ 423 (533)
.|+. +.|..++..|.+.+ +...|-.|+-+ .|+..-+..+++.|.+.|+.|+..|+
T Consensus 217 ag~~-d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~ 274 (1088)
T KOG4318|consen 217 AGDV-DGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQ 274 (1088)
T ss_pred cCch-hhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchh
Confidence 4554 66777777766532 12222233332 66666677777777777777776553
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.9e-06 Score=86.57 Aligned_cols=285 Identities=16% Similarity=0.151 Sum_probs=195.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhc-
Q 009506 115 IKLYGTAGNFDGCLNVYEEMKAIGVKPNM-ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT-YASLLRAYGRA- 191 (533)
Q Consensus 115 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~- 191 (533)
...+...|++++|++.+++-... .+|. ..+......+.+.|+.++|..+|..+++.+ |+... |..+..+..-.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhc
Confidence 34567889999999999875543 3454 455666778899999999999999999986 55554 44555554222
Q ss_pred ----CChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChH
Q 009506 192 ----RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT-DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 266 (533)
Q Consensus 192 ----g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 266 (533)
...+...++|+++...-. .......+.-.+.....+ ..+...+..+..+|+ | .+|+.|-..|......+
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~yp--~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~Kgv--P--slF~~lk~Ly~d~~K~~ 160 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEKYP--RSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGV--P--SLFSNLKPLYKDPEKAA 160 (517)
T ss_pred ccccccHHHHHHHHHHHHHhCc--cccchhHhhcccCCHHHHHHHHHHHHHHHHhcCC--c--hHHHHHHHHHcChhHHH
Confidence 246777888888877632 222222222222221222 345555667777774 3 35677777777666666
Q ss_pred HHHHHHHHHHHc----C----------CCCCH--HHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCC-HHHHHHHHHHH
Q 009506 267 EAEAMFNEMLEA----G----------FEPNL--FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD-DRFCGCLLNVM 329 (533)
Q Consensus 267 ~A~~~~~~m~~~----g----------~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~ 329 (533)
-..+++..+... + -.|.. .++.-+.+.|...|++++|++++++.++. .|+ +..|..-.+.+
T Consensus 161 ~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~Karil 238 (517)
T PF12569_consen 161 IIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARIL 238 (517)
T ss_pred HHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH
Confidence 666666665432 1 12343 24466678888999999999999998875 466 44788888889
Q ss_pred hcCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhccCc-cch--------hh--HHHHHHHHh
Q 009506 330 TQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDV-KKA--------YC--NCLIDLCVN 397 (533)
Q Consensus 330 ~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~~~~-~~~--------~~--~~li~~~~~ 397 (533)
.+.|+ .+|.+.++.....+...-.+.+-.+..+.+.|+. ++|.+++....+.. +.. .| .....+|.+
T Consensus 239 Kh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~-e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r 317 (517)
T PF12569_consen 239 KHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRI-EEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLR 317 (517)
T ss_pred HHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCH-HHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHH
Confidence 99999 9999999999888877666656667777777876 89998887776543 111 22 667788999
Q ss_pred cCCHHHHHHHHHHHH
Q 009506 398 LNLLENACKLLELGL 412 (533)
Q Consensus 398 ~g~~~~A~~l~~~m~ 412 (533)
.|++..|++.|....
T Consensus 318 ~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 318 QGDYGLALKRFHAVL 332 (517)
T ss_pred HhhHHHHHHHHHHHH
Confidence 999999988777664
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.6e-07 Score=84.68 Aligned_cols=232 Identities=13% Similarity=0.036 Sum_probs=180.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH-HHHHHHHH
Q 009506 111 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY-ASLLRAYG 189 (533)
Q Consensus 111 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~-~~ll~~~~ 189 (533)
-+.+.++|.+.|.+.+|.+.|+.-.+. .|-+.||-.|-.+|.+..++..|+.+|.+-++. .|-.+|| .-..+.+-
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHH
Confidence 367888999999999999999988774 578888989999999999999999999998875 3544444 55677888
Q ss_pred hcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 009506 190 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 269 (533)
Q Consensus 190 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 269 (533)
..++.++|.++|++..+.... ++.....+...|.-.++.+.|+..++++...| .-+...|+.+.-+|.-.+++|.++
T Consensus 302 am~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG--~~speLf~NigLCC~yaqQ~D~~L 378 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMG--AQSPELFCNIGLCCLYAQQIDLVL 378 (478)
T ss_pred HHHhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhc--CCChHHHhhHHHHHHhhcchhhhH
Confidence 899999999999999886433 66666667778888999999999999999999 478889999999999999999999
Q ss_pred HHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHh
Q 009506 270 AMFNEMLEAGFEPN--LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEK 346 (533)
Q Consensus 270 ~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~ 346 (533)
--|.+....--.|+ ...|-.|-......|++..|.+.|+-....+-. ....++.|.-.-.+.|+ ++|..++.....
T Consensus 379 ~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 379 PSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 99988776433344 345666666667788888888888877654322 33466666666666666 666666666555
Q ss_pred cCCC
Q 009506 347 SNSK 350 (533)
Q Consensus 347 ~~~~ 350 (533)
..|+
T Consensus 458 ~~P~ 461 (478)
T KOG1129|consen 458 VMPD 461 (478)
T ss_pred hCcc
Confidence 4444
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.88 E-value=2e-06 Score=89.65 Aligned_cols=301 Identities=14% Similarity=0.116 Sum_probs=163.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHH----HCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC---CCCCCH-
Q 009506 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMK----AIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN---GLSPNW- 178 (533)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~p~~- 178 (533)
|...|-.+...|-...-+ .++.+|.... ..+-.+-....|.+.......|++++|...|+..... ...+|.
T Consensus 413 d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~ 491 (1018)
T KOG2002|consen 413 DSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEG 491 (1018)
T ss_pred cHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcccc
Confidence 444444444444433322 2254444322 3333455556666666666666666666666665543 111222
Q ss_pred -----HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHH
Q 009506 179 -----NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 253 (533)
Q Consensus 179 -----~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~ 253 (533)
.+--.+...+-..++.+.|.+.|..+.+..+. -+..|--+..+.-..+...+|...+....... ..+...++
T Consensus 492 ~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~-YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d--~~np~ars 568 (1018)
T KOG2002|consen 492 KSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG-YIDAYLRLGCMARDKNNLYEASLLLKDALNID--SSNPNARS 568 (1018)
T ss_pred ccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch-hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc--cCCcHHHH
Confidence 12222334444455666666666666654211 22233333333333455666666666666544 34555555
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHh------------cCChhHHHHHHHHhhhCCCCCCHH
Q 009506 254 SMITICSCRGKVSEAEAMFNEMLEA-GFEPNLFVLTSLIQCYGK------------AQRTDDVVRALNRLPELGITPDDR 320 (533)
Q Consensus 254 ~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~------------~g~~~~a~~~~~~m~~~g~~p~~~ 320 (533)
.+...|.+...+..|.+-|....+. ...+|..+...|-..|.+ .+..++|+++|.+..+... -|..
T Consensus 569 l~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dp-kN~y 647 (1018)
T KOG2002|consen 569 LLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDP-KNMY 647 (1018)
T ss_pred HHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCc-chhh
Confidence 5666666666666666655554432 112455555555443332 2345567777776665431 2444
Q ss_pred HHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhcc----CccchhhHHHHHHH
Q 009506 321 FCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK----DVKKAYCNCLIDLC 395 (533)
Q Consensus 321 ~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~~----~~~~~~~~~li~~~ 395 (533)
.-+-+.-.++..|. .+|..+|..+.+...+...++-.++.+|..+|++ ..|.++|+.... ..+..+.+.|..++
T Consensus 648 AANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy-~~AIqmYe~~lkkf~~~~~~~vl~~Lara~ 726 (1018)
T KOG2002|consen 648 AANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQY-RLAIQMYENCLKKFYKKNRSEVLHYLARAW 726 (1018)
T ss_pred hccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHH-HHHHHHHHHHHHHhcccCCHHHHHHHHHHH
Confidence 55556666666777 7777777777766655555555666666667766 667777665432 23455667777777
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 009506 396 VNLNLLENACKLLELGLT 413 (533)
Q Consensus 396 ~~~g~~~~A~~l~~~m~~ 413 (533)
.+.|.+.+|.+.+.....
T Consensus 727 y~~~~~~eak~~ll~a~~ 744 (1018)
T KOG2002|consen 727 YEAGKLQEAKEALLKARH 744 (1018)
T ss_pred HHhhhHHHHHHHHHHHHH
Confidence 777777777766655543
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.2e-06 Score=81.86 Aligned_cols=254 Identities=12% Similarity=0.030 Sum_probs=125.1
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHH
Q 009506 153 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA--YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 230 (533)
Q Consensus 153 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~--~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 230 (533)
+.+.|+++.|+++++-+.+..-+.-...-|.|-.. +.-..++..|.+.-+......- -+......-.+....+|+++
T Consensus 429 ~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dr-yn~~a~~nkgn~~f~ngd~d 507 (840)
T KOG2003|consen 429 LLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDR-YNAAALTNKGNIAFANGDLD 507 (840)
T ss_pred HHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccc-cCHHHhhcCCceeeecCcHH
Confidence 45666666666666666554322222222222222 2123345555555544433210 01222211222334456666
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 009506 231 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 310 (533)
Q Consensus 231 ~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 310 (533)
+|.+.+++.....- ..+...-.+.-.+-..|++++|++.|-++... +.-+..+...+...|....+...|++++.+.
T Consensus 508 ka~~~ykeal~nda--sc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~ 584 (840)
T KOG2003|consen 508 KAAEFYKEALNNDA--SCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQA 584 (840)
T ss_pred HHHHHHHHHHcCch--HHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 66666666654321 11111112222345566666666666554331 1234555555666666666666666666555
Q ss_pred hhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhc-cCccchhh
Q 009506 311 PELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSIS-KDVKKAYC 388 (533)
Q Consensus 311 ~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~-~~~~~~~~ 388 (533)
... +..|+.+..-|...|-+.|+ .+|.+.+-.--+.-|.....+.-|...|.... +.+++..+|++.. ..|+..-|
T Consensus 585 ~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtq-f~ekai~y~ekaaliqp~~~kw 662 (840)
T KOG2003|consen 585 NSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQ-FSEKAINYFEKAALIQPNQSKW 662 (840)
T ss_pred ccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhH-HHHHHHHHHHHHHhcCccHHHH
Confidence 432 33445566666666666666 66655544333333333333333333333222 4466777776654 35666667
Q ss_pred HHHHHHHH-hcCCHHHHHHHHHHHH
Q 009506 389 NCLIDLCV-NLNLLENACKLLELGL 412 (533)
Q Consensus 389 ~~li~~~~-~~g~~~~A~~l~~~m~ 412 (533)
..||..|. +.|++++|+++++...
T Consensus 663 qlmiasc~rrsgnyqka~d~yk~~h 687 (840)
T KOG2003|consen 663 QLMIASCFRRSGNYQKAFDLYKDIH 687 (840)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHH
Confidence 66665543 4577777777776654
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.2e-06 Score=88.21 Aligned_cols=233 Identities=20% Similarity=0.233 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHc-----CC-CcCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCC
Q 009506 179 NTYASLLRAYGRARYGEDTLSVYREMKEK-----GM-QLSVTL-YNTLLAMCADVGYTDEAFEIFEDMKS-----SENCQ 246 (533)
Q Consensus 179 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-----g~-~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~ 246 (533)
.+...|..+|...|+++.|+.+++...+. |. .|.+.+ .+.+...|...+++++|..+|+++.. .|.-.
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34444555555556666655555544332 21 112111 22233455555555555555555432 11101
Q ss_pred C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHH-----cCC-CCCH-HHHHHHHHHHHhcCChhHHHHHHHHhhhC---CC
Q 009506 247 P-DSWTFSSMITICSCRGKVSEAEAMFNEMLE-----AGF-EPNL-FVLTSLIQCYGKAQRTDDVVRALNRLPEL---GI 315 (533)
Q Consensus 247 p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~-~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~ 315 (533)
| -..+++.|...|.+.|++++|...+++..+ .|. .|.+ ..++.+...|+..+++++|..++.+..+. -.
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 1 234445555555666665555555554322 111 1222 12344444555556666665555543221 11
Q ss_pred CCCH----HHHHHHHHHHhcCCh-HHHHHHHHHHHhc--------CCChhHHHHHHHHhhhhhccHHHHHHHHHhhh---
Q 009506 316 TPDD----RFCGCLLNVMTQTPK-EELGKLVECVEKS--------NSKLGYVVKLLLEEQDIEGDFKKEATELFNSI--- 379 (533)
Q Consensus 316 ~p~~----~~~~~ll~~~~~~~~-~~a~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~--- 379 (533)
.++. .+++.|-..|...|+ .+|.++++.+... .+..+..++.+...|.+.+.. ++|.++|.+.
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~-~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKY-EEAEQLFEEAKDI 438 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhccc-chHHHHHHHHHHH
Confidence 1222 255556666666666 6666655544321 122233445555555444332 4444444332
Q ss_pred ----cc-Ccc-chhhHHHHHHHHhcCCHHHHHHHHHHHH
Q 009506 380 ----SK-DVK-KAYCNCLIDLCVNLNLLENACKLLELGL 412 (533)
Q Consensus 380 ----~~-~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~ 412 (533)
.. .++ ..+|..|...|.+.|+++.|+++.+...
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 11 222 3488999999999999999999988875
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.2e-05 Score=78.08 Aligned_cols=302 Identities=9% Similarity=-0.069 Sum_probs=175.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH--
Q 009506 108 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG-VKPNMI-TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS-- 183 (533)
Q Consensus 108 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~pd~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~-- 183 (533)
+..|..+...+...|+.+.+.+.+....... ..++.. ........+...|++++|.+++++..+.. +.|...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhH
Confidence 3446666667777788888777776655431 122321 12222334567889999999999888753 334444442
Q ss_pred -HHHHHHhcCChHHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh
Q 009506 184 -LLRAYGRARYGEDTLSVYREMKEKGMQLS-VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 261 (533)
Q Consensus 184 -ll~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 261 (533)
+.......+..+.+.+.++. .....|+ ......+...+...|++++|++.+++..+.. +.+...+..+..+|..
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--p~~~~~~~~la~i~~~ 160 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN--PDDAWAVHAVAHVLEM 160 (355)
T ss_pred HHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHH
Confidence 12222224455555555544 1122233 3444455677888999999999999988865 4567778888889999
Q ss_pred cCChHHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHHhcCChhHHHHHHHHhhhCCC-CCCHHHH-H--HHHHHHhcCCh
Q 009506 262 RGKVSEAEAMFNEMLEAGF-EPNL--FVLTSLIQCYGKAQRTDDVVRALNRLPELGI-TPDDRFC-G--CLLNVMTQTPK 334 (533)
Q Consensus 262 ~g~~~~A~~~~~~m~~~g~-~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~-~--~ll~~~~~~~~ 334 (533)
.|++++|...+++..+..- .++. ..|..+...+...|+.++|..+|++...... .+..... + .++..+...|.
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~ 240 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGH 240 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCC
Confidence 9999999999988776421 1232 3455677888899999999999998754332 1111111 1 33333444443
Q ss_pred -HHHHHH---HHHHHhcCCC-hhHHH-HHHHHhhhhhccHHHHHHHHHhhhccCc-----------cchhhHHHHHHHHh
Q 009506 335 -EELGKL---VECVEKSNSK-LGYVV-KLLLEEQDIEGDFKKEATELFNSISKDV-----------KKAYCNCLIDLCVN 397 (533)
Q Consensus 335 -~~a~~~---~~~~~~~~~~-~~~~~-~~l~~~~~~~g~~~~~a~~~~~~~~~~~-----------~~~~~~~li~~~~~ 397 (533)
..+.++ ........+. ...+. ......+...|+. ++|..+++.+.... .+...-...-++..
T Consensus 241 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~ 319 (355)
T cd05804 241 VDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDK-DALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFA 319 (355)
T ss_pred CChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHH
Confidence 222222 2222221111 11111 2344445555655 77777776654311 11122333445678
Q ss_pred cCCHHHHHHHHHHHHhcc
Q 009506 398 LNLLENACKLLELGLTLE 415 (533)
Q Consensus 398 ~g~~~~A~~l~~~m~~~g 415 (533)
.|+.++|..++......+
T Consensus 320 ~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 320 EGNYATALELLGPVRDDL 337 (355)
T ss_pred cCCHHHHHHHHHHHHHHH
Confidence 899999999888776443
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=7.7e-06 Score=78.70 Aligned_cols=197 Identities=12% Similarity=0.014 Sum_probs=142.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009506 108 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 187 (533)
Q Consensus 108 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 187 (533)
...|..+...|.+.|++++|+..|++..+.. +.+...|+.+...+...|++++|...|++..+.. +-+..+|..+..+
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~ 141 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIA 141 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4568888889999999999999999998753 2367889999999999999999999999998753 2346788888888
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHH
Q 009506 188 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 267 (533)
Q Consensus 188 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 267 (533)
+...|++++|.+.|+...+.... +. ........+...++.++|.+.|++..... .++...+ .+ .....|+..+
T Consensus 142 l~~~g~~~eA~~~~~~al~~~P~-~~-~~~~~~~l~~~~~~~~~A~~~l~~~~~~~--~~~~~~~-~~--~~~~lg~~~~ 214 (296)
T PRK11189 142 LYYGGRYELAQDDLLAFYQDDPN-DP-YRALWLYLAESKLDPKQAKENLKQRYEKL--DKEQWGW-NI--VEFYLGKISE 214 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCC-CH-HHHHHHHHHHccCCHHHHHHHHHHHHhhC--CccccHH-HH--HHHHccCCCH
Confidence 99999999999999999886443 22 12222233455678999999997655432 3333222 22 2334556555
Q ss_pred HHHHHHHHHHcC-----CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhhCC
Q 009506 268 AEAMFNEMLEAG-----FEP-NLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 314 (533)
Q Consensus 268 A~~~~~~m~~~g-----~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 314 (533)
+ +.+..+.+.. +.| ....|..+...+.+.|++++|...|++..+.+
T Consensus 215 ~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 215 E-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred H-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 4 3555544311 011 23578888899999999999999999988765
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=5.2e-06 Score=79.87 Aligned_cols=219 Identities=8% Similarity=-0.069 Sum_probs=142.6
Q ss_pred CChHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 009506 122 GNFDGCLNVYEEMKAIG-VKPN--MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 198 (533)
Q Consensus 122 g~~~~A~~~~~~m~~~g-~~pd--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 198 (533)
+..+.++.-+.++.... ..|+ ...|..+...+.+.|+.++|...|++..+.. +.+...|+.+...|...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 45666777777776432 1222 3457777778888899999999888888764 345788888888899999999999
Q ss_pred HHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 009506 199 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA 278 (533)
Q Consensus 199 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 278 (533)
..|++..+.... +..+|..+...+...|++++|++.|+...+.. |+..........+...++.++|...|.+....
T Consensus 119 ~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~---P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 119 EAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD---PNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 999888876544 56677778888888899999999998887753 43222222223344567888888888765432
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC---CCC--C-CHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCC
Q 009506 279 GFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL---GIT--P-DDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSK 350 (533)
Q Consensus 279 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~--p-~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~ 350 (533)
. .++...+ .+. ....|+.+.+ +.+..+.+. .+. | ....|..+...+.+.|+ ++|...|+.....+|.
T Consensus 195 ~-~~~~~~~-~~~--~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~ 268 (296)
T PRK11189 195 L-DKEQWGW-NIV--EFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVY 268 (296)
T ss_pred C-CccccHH-HHH--HHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence 1 2332222 222 2334555443 344444321 111 1 12366777777778888 8888888887777753
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.79 E-value=7.3e-06 Score=72.02 Aligned_cols=182 Identities=15% Similarity=0.040 Sum_probs=83.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC
Q 009506 149 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 228 (533)
Q Consensus 149 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 228 (533)
|--.|.+.|+...|.+-+++.++.. +-+..+|..+...|.+.|..+.|.+-|+........ +..+.|.....+|..|+
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~qg~ 118 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCAQGR 118 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHhCCC
Confidence 3334444555555555555544432 222344444444555555555555555544443322 34444444445555555
Q ss_pred HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 009506 229 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALN 308 (533)
Q Consensus 229 ~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 308 (533)
+++|...|++........--..+|..+.-+..+.|+.+.|...|++-.+.. +-...+...+.+...+.|++-.|..+++
T Consensus 119 ~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~~~~ 197 (250)
T COG3063 119 PEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARLYLE 197 (250)
T ss_pred hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHHHHH
Confidence 555555555544432211123444455444455555555555555544422 1113334444444455555555555555
Q ss_pred HhhhCCCCCCHHHHHHHHHHHhcCCh
Q 009506 309 RLPELGITPDDRFCGCLLNVMTQTPK 334 (533)
Q Consensus 309 ~m~~~g~~p~~~~~~~ll~~~~~~~~ 334 (533)
.....+. ++....-..|..-...|+
T Consensus 198 ~~~~~~~-~~A~sL~L~iriak~~gd 222 (250)
T COG3063 198 RYQQRGG-AQAESLLLGIRIAKRLGD 222 (250)
T ss_pred HHHhccc-ccHHHHHHHHHHHHHhcc
Confidence 5544433 444444444444444444
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.3e-08 Score=62.11 Aligned_cols=32 Identities=31% Similarity=0.518 Sum_probs=21.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 009506 103 KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM 134 (533)
Q Consensus 103 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 134 (533)
|+.||..+||+||++|++.|++++|+++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56666666666666666666666666666665
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.2e-05 Score=77.48 Aligned_cols=265 Identities=10% Similarity=-0.003 Sum_probs=115.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009506 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 186 (533)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 186 (533)
++...-.-.+-+-..+++.+..++++.+.+. .+++...+..=|.++...|+..+-..+=.+|.+. .+-...+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHH
Confidence 3333334444444455555555555555443 1233334444444455555544444444444443 1233445555544
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChH
Q 009506 187 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 266 (533)
Q Consensus 187 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 266 (533)
-|.-.|+..+|.+.|.+....+.. =...|-.....|+-.|..+.|...+...-+.- +-...-+--+.--|.+.+++.
T Consensus 321 YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~--~G~hlP~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM--PGCHLPSLYLGMEYMRTNNLK 397 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc--cCCcchHHHHHHHHHHhccHH
Confidence 444445555555555544332111 12344444555555555555555544333211 111111222223344455555
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC----C--CCCCHHHHHHHHHHHhcCCh-HHHHH
Q 009506 267 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL----G--ITPDDRFCGCLLNVMTQTPK-EELGK 339 (533)
Q Consensus 267 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g--~~p~~~~~~~ll~~~~~~~~-~~a~~ 339 (533)
.|.+.|.+..... +-|+..++-+--...+.+.+.+|..+|+..... + ......+++.|-.+|.+.+. ++|+.
T Consensus 398 LAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 398 LAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 5555555443321 122334444443334445555555555544311 0 00122344444445555555 55555
Q ss_pred HHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhh
Q 009506 340 LVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNS 378 (533)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~ 378 (533)
.+++.....|........++..|...|++ +.|.+.|++
T Consensus 477 ~~q~aL~l~~k~~~~~asig~iy~llgnl-d~Aid~fhK 514 (611)
T KOG1173|consen 477 YYQKALLLSPKDASTHASIGYIYHLLGNL-DKAIDHFHK 514 (611)
T ss_pred HHHHHHHcCCCchhHHHHHHHHHHHhcCh-HHHHHHHHH
Confidence 55555555555444444555555555544 555555444
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.8e-08 Score=61.47 Aligned_cols=26 Identities=23% Similarity=0.557 Sum_probs=9.4
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHH
Q 009506 176 PNWNTYASLLRAYGRARYGEDTLSVY 201 (533)
Q Consensus 176 p~~~~~~~ll~~~~~~g~~~~a~~~~ 201 (533)
||..|||+||++|++.|++++|.++|
T Consensus 5 Pd~~ty~~lI~~~Ck~G~~~~A~~l~ 30 (34)
T PF12854_consen 5 PDVVTYNTLIDGYCKAGRVDEAFELF 30 (34)
T ss_pred CcHhHHHHHHHHHHHCCCHHHHHHHH
Confidence 33333333333333333333333333
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.3e-06 Score=82.97 Aligned_cols=232 Identities=16% Similarity=0.131 Sum_probs=149.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CCHHHHHHHHH
Q 009506 108 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS-PNWNTYASLLR 186 (533)
Q Consensus 108 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~~~~~ll~ 186 (533)
.....-+.++|...|+++.++ .++.... .|.......+...+...++-+.++.-+++....... .|.........
T Consensus 35 ~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~ 110 (290)
T PF04733_consen 35 LERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAAT 110 (290)
T ss_dssp HHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 444556778888888877544 4443332 566655544444443334444555555444433333 23333333445
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHH---HHHHHHHhcC
Q 009506 187 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS---SMITICSCRG 263 (533)
Q Consensus 187 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~---~li~~~~~~g 263 (533)
.+...|++++|++++..- -+.......+..|.+.++++.|.+.++.|.+.+ .|....+ +.+..+.-.+
T Consensus 111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~---eD~~l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID---EDSILTQLAEAWVNLATGGE 181 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS---CCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHhCch
Confidence 667789999998888643 266777778899999999999999999998743 3433322 3333333345
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh--HHHHHHH
Q 009506 264 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK--EELGKLV 341 (533)
Q Consensus 264 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~--~~a~~~~ 341 (533)
.+.+|..+|+++.+. +.++..+.+.+..+....|++++|.+++.+..+.+. -|..+...++.+....|+ +.+.+++
T Consensus 182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~-~~~d~LaNliv~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP-NDPDTLANLIVCSLHLGKPTEAAERYL 259 (290)
T ss_dssp CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C-CHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 799999999997653 567888999999999999999999999998766542 244566667777777777 6778888
Q ss_pred HHHHhcCCChhHH
Q 009506 342 ECVEKSNSKLGYV 354 (533)
Q Consensus 342 ~~~~~~~~~~~~~ 354 (533)
..+....|+....
T Consensus 260 ~qL~~~~p~h~~~ 272 (290)
T PF04733_consen 260 SQLKQSNPNHPLV 272 (290)
T ss_dssp HHCHHHTTTSHHH
T ss_pred HHHHHhCCCChHH
Confidence 8888888876544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.2e-05 Score=77.88 Aligned_cols=220 Identities=15% Similarity=0.144 Sum_probs=172.8
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 009506 154 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 233 (533)
Q Consensus 154 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 233 (533)
.-.|+.-.+..-|+..++..-.++ ..|--+..+|....+-++..+.|.+..+.+.. +..+|.+-..++.-.+++++|.
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHH
Confidence 346788888999998887653333 33777788899999999999999999888766 7788888888888899999999
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC
Q 009506 234 EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 313 (533)
Q Consensus 234 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 313 (533)
.=|++..... +-+...|--+.-+.-+.+.+++++..|++.++. ++-.+..|+...+.+...++++.|.+.|+..++.
T Consensus 415 aDF~Kai~L~--pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 415 ADFQKAISLD--PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHhhcC--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 9999988754 446777777777777889999999999997664 5556889999999999999999999999998764
Q ss_pred C-----CCCCHH--HHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhc
Q 009506 314 G-----ITPDDR--FCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSIS 380 (533)
Q Consensus 314 g-----~~p~~~--~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~ 380 (533)
. +..+.. +--.++..- =.++ .+|..++....+.+|........|+....++|++ ++|+++|++--
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i-~eAielFEksa 564 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKI-DEAIELFEKSA 564 (606)
T ss_pred ccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhH-HHHHHHHHHHH
Confidence 2 111221 111222211 1255 8999999999999999998888888888899987 99999998753
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.6e-05 Score=67.79 Aligned_cols=198 Identities=10% Similarity=-0.008 Sum_probs=167.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009506 110 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 189 (533)
Q Consensus 110 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 189 (533)
+...|.-.|.+.|++..|..-+++..+.. +-+..+|..+...|-+.|..+.|.+-|++..+.. +-+..+.|..-..+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 45568889999999999999999999853 2356788899999999999999999999999764 345678899999999
Q ss_pred hcCChHHHHHHHHHHHHcCC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHH
Q 009506 190 RARYGEDTLSVYREMKEKGM-QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 268 (533)
Q Consensus 190 ~~g~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 268 (533)
..|++++|.+.|++....-. .--..+|..+.-+..+.|+.+.|.+.|++..+.. +-...+.-.+.....+.|++-.|
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d--p~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD--PQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC--cCCChHHHHHHHHHHhcccchHH
Confidence 99999999999999887522 1235678888888999999999999999988865 44567788899999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 009506 269 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 312 (533)
Q Consensus 269 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 312 (533)
...++.....+. ++..+.-..|+.-...|+.+.+.++=..+..
T Consensus 193 r~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 193 RLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 999999877665 8888888888888889999988887666654
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.62 E-value=6.9e-05 Score=74.42 Aligned_cols=259 Identities=14% Similarity=0.050 Sum_probs=157.6
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q 009506 115 IKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGR----AKRPWQVKTIYKEMTDNGLSPN-WNTYASLLRAYG 189 (533)
Q Consensus 115 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~ 189 (533)
...+...|++++|.+++++..+.. +.|...++. ...+.. .+..+.+.+.+.. .....|+ ......+...+.
T Consensus 50 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~ 125 (355)
T cd05804 50 ALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLE 125 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHH
Confidence 344567899999999999988752 234444442 223333 3445555555544 1222333 345556677888
Q ss_pred hcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCH--HHHHHHHHHHHhcCChHH
Q 009506 190 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS--WTFSSMITICSCRGKVSE 267 (533)
Q Consensus 190 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~--~~~~~li~~~~~~g~~~~ 267 (533)
..|++++|...+++..+.... +...+..+...|...|++++|...+++........++. ..|..+...+...|++++
T Consensus 126 ~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~ 204 (355)
T cd05804 126 EAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEA 204 (355)
T ss_pred HcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHH
Confidence 999999999999999987644 67788888999999999999999999887653212332 346678889999999999
Q ss_pred HHHHHHHHHHcCC-CCCHHHH-H--HHHHHHHhcCChhHHHHH--HHHhhhCCC--CCCHHHHHHHHHHHhcCCh-HHHH
Q 009506 268 AEAMFNEMLEAGF-EPNLFVL-T--SLIQCYGKAQRTDDVVRA--LNRLPELGI--TPDDRFCGCLLNVMTQTPK-EELG 338 (533)
Q Consensus 268 A~~~~~~m~~~g~-~p~~~~~-~--~li~~~~~~g~~~~a~~~--~~~m~~~g~--~p~~~~~~~ll~~~~~~~~-~~a~ 338 (533)
|.++|++...... .+..... + .++.-+...|..+.+.++ +........ ............++...|+ +++.
T Consensus 205 A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~ 284 (355)
T cd05804 205 ALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALD 284 (355)
T ss_pred HHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHH
Confidence 9999999864321 1222211 1 333344445544333332 111111111 1111222245666667777 8888
Q ss_pred HHHHHHHhcCCC---hh----HHH--HHHHHhhhhhccHHHHHHHHHhhh
Q 009506 339 KLVECVEKSNSK---LG----YVV--KLLLEEQDIEGDFKKEATELFNSI 379 (533)
Q Consensus 339 ~~~~~~~~~~~~---~~----~~~--~~l~~~~~~~g~~~~~a~~~~~~~ 379 (533)
.+++.+...... .. .+. ......+...|+. ++|.+.+...
T Consensus 285 ~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~-~~A~~~L~~a 333 (355)
T cd05804 285 KLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNY-ATALELLGPV 333 (355)
T ss_pred HHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCH-HHHHHHHHHH
Confidence 888877653222 11 111 2223445566776 7777766543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.60 E-value=0.00058 Score=66.29 Aligned_cols=312 Identities=13% Similarity=0.150 Sum_probs=183.4
Q ss_pred HhhHHHHHhhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 009506 92 EKSYDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD 171 (533)
Q Consensus 92 ~~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 171 (533)
+++|+.+.. .+.|+...|++.|+.=.+.+.++.|..+|++..- +.|++.+|--...-=-++|....+..+|+...+
T Consensus 160 aRqiferW~--~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie 235 (677)
T KOG1915|consen 160 ARQIFERWM--EWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIE 235 (677)
T ss_pred HHHHHHHHH--cCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 344544443 3678888888888888888888888888888765 347777776666655666666666666655432
Q ss_pred C-CC-CCCHHHHHHHHHHHHhcCChHHHHHHH--------------------------------------------HHHH
Q 009506 172 N-GL-SPNWNTYASLLRAYGRARYGEDTLSVY--------------------------------------------REMK 205 (533)
Q Consensus 172 ~-g~-~p~~~~~~~ll~~~~~~g~~~~a~~~~--------------------------------------------~~m~ 205 (533)
. |- .-+...+++....=.++..++.|.-+| +.+.
T Consensus 236 ~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v 315 (677)
T KOG1915|consen 236 FLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEV 315 (677)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHH
Confidence 1 10 000111111111101111111111111 1111
Q ss_pred HcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC------------------------------------------
Q 009506 206 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE------------------------------------------ 243 (533)
Q Consensus 206 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------------------------------------------ 243 (533)
..+ ..|-.+|--.+..-...|+.+...++|++....-
T Consensus 316 ~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~ 394 (677)
T KOG1915|consen 316 SKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD 394 (677)
T ss_pred HhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 111 2244455555555555556665555555554321
Q ss_pred CCCCCHHHHHHHHHHH----HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCH
Q 009506 244 NCQPDSWTFSSMITIC----SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 319 (533)
Q Consensus 244 ~~~p~~~~~~~li~~~----~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 319 (533)
.++-..+||.-+--+| .++.++..|.+++... -|.-|-..+|...|..=.+.+.+|.+..+|++..+.+.. +.
T Consensus 395 lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~A--IG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe-~c 471 (677)
T KOG1915|consen 395 LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNA--IGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPE-NC 471 (677)
T ss_pred hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHH--hccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH-hh
Confidence 1122233333222222 2455666666666553 356788888988898889999999999999999987533 55
Q ss_pred HHHHHHHHHHhcCCh-HHHHHHHHHHHhcC-CChhHHH-HHHHHhhhhhccHHHHHHHHHhhhcc-CccchhhHHHHHHH
Q 009506 320 RFCGCLLNVMTQTPK-EELGKLVECVEKSN-SKLGYVV-KLLLEEQDIEGDFKKEATELFNSISK-DVKKAYCNCLIDLC 395 (533)
Q Consensus 320 ~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~-~~~~~~~-~~l~~~~~~~g~~~~~a~~~~~~~~~-~~~~~~~~~li~~~ 395 (533)
.+|.-....-...|+ +.+..+|....... .+....+ ...++.-..+|.. +.|..+++++.. .....+|-++...-
T Consensus 472 ~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~-ekaR~LYerlL~rt~h~kvWisFA~fe 550 (677)
T KOG1915|consen 472 YAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEF-EKARALYERLLDRTQHVKVWISFAKFE 550 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchH-HHHHHHHHHHHHhcccchHHHhHHHHh
Confidence 577777777778888 99999998766432 2222222 5666666677877 999999998764 33444676665544
Q ss_pred H-----hcC-----------CHHHHHHHHHHHH
Q 009506 396 V-----NLN-----------LLENACKLLELGL 412 (533)
Q Consensus 396 ~-----~~g-----------~~~~A~~l~~~m~ 412 (533)
. +.| ....|..+|+...
T Consensus 551 ~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn 583 (677)
T KOG1915|consen 551 ASASEGQEDEDLAELEITDENIKRARKIFERAN 583 (677)
T ss_pred ccccccccccchhhhhcchhHHHHHHHHHHHHH
Confidence 3 334 5667888888764
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.4e-05 Score=83.53 Aligned_cols=224 Identities=12% Similarity=0.113 Sum_probs=183.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 009506 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP-----NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 181 (533)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----d~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 181 (533)
....|-..|....+.++.++|++++++.... +.+ -...|.++++.-...|.-+...++|++..+.. ---..|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~ 1533 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVH 1533 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHH
Confidence 4567888888999999999999999998753 212 23578888888888888899999999998753 234678
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHH
Q 009506 182 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD---SWTFSSMITI 258 (533)
Q Consensus 182 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~---~~~~~~li~~ 258 (533)
..|...|.+.+.+++|.++|+.|.++ +.-...+|...+..+.+..+-+.|.+++.+..+. -|- .....-.+..
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~---lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS---LPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh---cchhhhHHHHHHHHHH
Confidence 89999999999999999999999876 2236788999999999999999999999988774 343 3444555666
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHH--HHHHHHHHHhcCChHH
Q 009506 259 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR--FCGCLLNVMTQTPKEE 336 (533)
Q Consensus 259 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~~~~~ 336 (533)
-.+.|+.+.+..+|+..... .+.-...|+..|+.-.++|+.+.+..+|++....++.|... .|...|..-...|+++
T Consensus 1610 EFk~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchh
Confidence 77899999999999998764 34457889999999999999999999999999999888764 7777777777777733
Q ss_pred HH
Q 009506 337 LG 338 (533)
Q Consensus 337 a~ 338 (533)
..
T Consensus 1689 ~v 1690 (1710)
T KOG1070|consen 1689 NV 1690 (1710)
T ss_pred hH
Confidence 33
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.59 E-value=5.6e-05 Score=74.72 Aligned_cols=264 Identities=10% Similarity=-0.021 Sum_probs=188.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 009506 142 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 221 (533)
Q Consensus 142 d~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 221 (533)
|....-.-..-|...+++.+..++++...+.. +++...+..-|.++...|+..+-..+=..|.+.-+. ...+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~-~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS-KALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CCcchhhHHH
Confidence 34444444555667788888888888888753 566677777777888888888877777788776433 6778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh
Q 009506 222 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 301 (533)
Q Consensus 222 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 301 (533)
-|...|...+|.+.|.+....+ +--...|-.....|+-.|.-|+|...+...-+.- +-..--+.-+---|.+.+..+
T Consensus 321 YYl~i~k~seARry~SKat~lD--~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLD--PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLK 397 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcC--ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHH
Confidence 8888899999999998776543 2346678888888888899898888887765420 111111222334567788899
Q ss_pred HHHHHHHHhhhCCCCCC-HHHHHHHHHHHhcCCh-HHHHHHHHHHHh----cC---CChhHHHHHHHHhhhhhccHHHHH
Q 009506 302 DVVRALNRLPELGITPD-DRFCGCLLNVMTQTPK-EELGKLVECVEK----SN---SKLGYVVKLLLEEQDIEGDFKKEA 372 (533)
Q Consensus 302 ~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~-~~a~~~~~~~~~----~~---~~~~~~~~~l~~~~~~~g~~~~~a 372 (533)
.|.++|.+... +-|+ +...+.+--.....+. .+|..+|+.... .. +.....++.|+..|.+++.. ++|
T Consensus 398 LAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~-~eA 474 (611)
T KOG1173|consen 398 LAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKY-EEA 474 (611)
T ss_pred HHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhH-HHH
Confidence 99999988764 4454 4455555555555556 888888876552 11 22334458889999999876 899
Q ss_pred HHHHhhhc--cCccchhhHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009506 373 TELFNSIS--KDVKKAYCNCLIDLCVNLNLLENACKLLELGLT 413 (533)
Q Consensus 373 ~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 413 (533)
+..|++.- .+.+..++.++.-.|...|+++.|++.|.+.+.
T Consensus 475 I~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 475 IDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 99888764 245777899999999999999999999987653
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.5e-05 Score=86.09 Aligned_cols=203 Identities=14% Similarity=0.155 Sum_probs=147.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 009506 212 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP---DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 288 (533)
Q Consensus 212 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 288 (533)
....|-..|......++.++|.+++++....=.+.- -...|.++++.-..-|.-+...++|++..+. --....|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHH
Confidence 455666667777777777777777777654210011 1345666666666667777788888877663 12245677
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCC--hhHHHHHHHHhhhhh
Q 009506 289 SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSK--LGYVVKLLLEEQDIE 365 (533)
Q Consensus 289 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~ 365 (533)
.|...|.+.+..++|.++|+.|.+. +.-....|...+..+.+..+ +.|..++....+.-|. +..++.-.+..-.+.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 7888888888888888888888654 22455678888888888877 7777788887777766 555667777777788
Q ss_pred ccHHHHHHHHHhhhccC--ccchhhHHHHHHHHhcCCHHHHHHHHHHHHhccccC
Q 009506 366 GDFKKEATELFNSISKD--VKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYT 418 (533)
Q Consensus 366 g~~~~~a~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~ 418 (533)
|+- ++++.+|+..... .....|+..|+.-.++|+.+.+..+|++....++.|
T Consensus 1614 GDa-eRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1614 GDA-ERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred CCc-hhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 876 8999999887542 256799999999999999999999999998877654
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.53 E-value=6.4e-05 Score=76.90 Aligned_cols=257 Identities=12% Similarity=0.081 Sum_probs=177.5
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc----
Q 009506 151 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV---- 226 (533)
Q Consensus 151 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~---- 226 (533)
..+...|++++|++.++.-... +......+......+.+.|+.++|..++..+.+.+.. +..-|..+..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhcccc
Confidence 4467889999999999775543 3334566677888999999999999999999998654 555555555555222
Q ss_pred -CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHH
Q 009506 227 -GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV-SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 304 (533)
Q Consensus 227 -g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 304 (533)
.+.+...++++++.... |.......+.-.+.....+ ..+...+..+...|++ .+|+.|-..|......+-..
T Consensus 90 ~~~~~~~~~~y~~l~~~y---p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKY---PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred cccHHHHHHHHHHHHHhC---ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHH
Confidence 35788889999887753 3333332222222222223 2345555666677764 34555666666555666566
Q ss_pred HHHHHhhhC----C----------CCCCHH--HHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhcc
Q 009506 305 RALNRLPEL----G----------ITPDDR--FCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGD 367 (533)
Q Consensus 305 ~~~~~m~~~----g----------~~p~~~--~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 367 (533)
+++...... + -.|... ++.-+...|...|+ ++|.++++..+...|........-+..+-..|+
T Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCC
Confidence 666665432 1 123332 44555667778899 999999999999999998888888888889998
Q ss_pred HHHHHHHHHhhhcc--CccchhhHHHHHHHHhcCCHHHHHHHHHHHHhccc
Q 009506 368 FKKEATELFNSISK--DVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEV 416 (533)
Q Consensus 368 ~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 416 (533)
+ ++|.+.++.... ..|..+=+-.+..+.++|+.++|.+++......+.
T Consensus 244 ~-~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 244 L-KEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred H-HHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 8 888888887764 23555666677788999999999999988766554
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.53 E-value=0.00052 Score=69.04 Aligned_cols=167 Identities=10% Similarity=0.107 Sum_probs=93.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHhhhC----------CCCC
Q 009506 251 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN---LFVLTSLIQCYGKAQRTDDVVRALNRLPEL----------GITP 317 (533)
Q Consensus 251 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----------g~~p 317 (533)
.|..+...|-..|+++.|..+|++..+-.++-- ..+|-.-...=.++.+++.|+++.++.... |-.|
T Consensus 389 Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~p 468 (835)
T KOG2047|consen 389 LWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEP 468 (835)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCc
Confidence 455677777788888888888887766433211 233444444445666777777776665321 1111
Q ss_pred -------CHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhcc---Cccc-
Q 009506 318 -------DDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK---DVKK- 385 (533)
Q Consensus 318 -------~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~~---~~~~- 385 (533)
....|...++..-..|- +...++++.+.....-...++-.....+. .....+++.+.+++-.. -|++
T Consensus 469 vQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLE-eh~yfeesFk~YErgI~LFk~p~v~ 547 (835)
T KOG2047|consen 469 VQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLE-EHKYFEESFKAYERGISLFKWPNVY 547 (835)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hhHHHHHHHHHHHcCCccCCCccHH
Confidence 11234444444445555 66666777766654444433311111111 12244777777765432 2333
Q ss_pred hhhHHHHHHHHhc---CCHHHHHHHHHHHHhccccCC
Q 009506 386 AYCNCLIDLCVNL---NLLENACKLLELGLTLEVYTD 419 (533)
Q Consensus 386 ~~~~~li~~~~~~---g~~~~A~~l~~~m~~~g~~~~ 419 (533)
..|++.+.-+.+. -.++.|..+|++.++ |+.|.
T Consensus 548 diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~ 583 (835)
T KOG2047|consen 548 DIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPE 583 (835)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHH
Confidence 3787777766543 358899999999888 66554
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.47 E-value=8.4e-06 Score=77.49 Aligned_cols=248 Identities=14% Similarity=0.098 Sum_probs=148.0
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 009506 117 LYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGED 196 (533)
Q Consensus 117 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 196 (533)
-+.-.|++..++.-.+ .....-..+......+.+++...|+++.++ .++.... .|.......+...+...++-+.
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHH
Confidence 3444688888886665 332211223445556778888888877544 4444333 5666666555544443344444
Q ss_pred HHHHHHHHHHcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 009506 197 TLSVYREMKEKGMQL-SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM 275 (533)
Q Consensus 197 a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 275 (533)
+..-+++........ +..........+...|++++|+++++.. .+.......+..|.+.++++.|.+.++.|
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444444333332222 2222233335577789999999988642 34566777889999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHH----hcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCC
Q 009506 276 LEAGFEPNLFVLTSLIQCYG----KAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSK 350 (533)
Q Consensus 276 ~~~g~~p~~~~~~~li~~~~----~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~ 350 (533)
.+.+ .| .+...|..++. ..+.+.+|..+|+++.+. ..++..+.+.+..+....|+ ++|.+++......++.
T Consensus 158 ~~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~ 233 (290)
T PF04733_consen 158 QQID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN 233 (290)
T ss_dssp HCCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred HhcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence 8742 34 33344444443 335689999999998765 56778888888888888888 8888888877777777
Q ss_pred hhHHHHHHHHhhhhhccHHHHHHHHHhhhc
Q 009506 351 LGYVVKLLLEEQDIEGDFKKEATELFNSIS 380 (533)
Q Consensus 351 ~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~ 380 (533)
....+..++....-.|+..+.+.+++.++.
T Consensus 234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred CHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 666654444444444433244555555554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.0014 Score=66.09 Aligned_cols=291 Identities=13% Similarity=0.129 Sum_probs=191.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-----------
Q 009506 108 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN---MITYNNLLDTMGRAKRPWQVKTIYKEMTDNG----------- 173 (533)
Q Consensus 108 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g----------- 173 (533)
...|..+.+.|-.+|+++.|+.+|++......+-- ..+|......=.+..+++.|+++.++....-
T Consensus 387 ~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~ 466 (835)
T KOG2047|consen 387 GTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNS 466 (835)
T ss_pred hhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCC
Confidence 34688999999999999999999999876533211 2344444455556778888888877664311
Q ss_pred CCC------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 009506 174 LSP------NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 247 (533)
Q Consensus 174 ~~p------~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p 247 (533)
.++ +...|...++.--..|-++....+|+.+.+..+.-...+.| ....+-...-++++.+++++-..... .|
T Consensus 467 ~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~N-yAmfLEeh~yfeesFk~YErgI~LFk-~p 544 (835)
T KOG2047|consen 467 EPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIIN-YAMFLEEHKYFEESFKAYERGISLFK-WP 544 (835)
T ss_pred CcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhHHHHHHHHHHHcCCccCC-Cc
Confidence 111 22344455555556788888899999998876642222222 22233445568899999988766553 44
Q ss_pred C-HHHHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCChhHHHHHHHHhhhCCCCCCHH-
Q 009506 248 D-SWTFSSMITICSC---RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQC--YGKAQRTDDVVRALNRLPELGITPDDR- 320 (533)
Q Consensus 248 ~-~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~a~~~~~~m~~~g~~p~~~- 320 (533)
+ ...|++-+.-+.+ ...++.|..+|++.++ |.+|...-+.-|+-+ =-+.|....|+.++++... ++.+...
T Consensus 545 ~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~-~v~~a~~l 622 (835)
T KOG2047|consen 545 NVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS-AVKEAQRL 622 (835)
T ss_pred cHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-cCCHHHHH
Confidence 4 3456666655554 3468999999999988 666654433333322 2356888999999999654 4555544
Q ss_pred -HHHHHHHHHhc-CChHHHHHHHHHHHhcCCChhHHH--HHHHHhhhhhccHHHHHHHHHhhhc----cCccchhhHHHH
Q 009506 321 -FCGCLLNVMTQ-TPKEELGKLVECVEKSNSKLGYVV--KLLLEEQDIEGDFKKEATELFNSIS----KDVKKAYCNCLI 392 (533)
Q Consensus 321 -~~~~ll~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~~a~~~~~~~~----~~~~~~~~~~li 392 (533)
.|++.|.--+. -|-.....+++..++.-|+..... --+.++-.+.|+. +.|..++.--. ...+...|++.=
T Consensus 623 ~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEi-dRARaIya~~sq~~dPr~~~~fW~twk 701 (835)
T KOG2047|consen 623 DMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEI-DRARAIYAHGSQICDPRVTTEFWDTWK 701 (835)
T ss_pred HHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhH-HHHHHHHHhhhhcCCCcCChHHHHHHH
Confidence 78877765543 333666678887777766554332 3345666777987 99999886543 233566999999
Q ss_pred HHHHhcCCHHH
Q 009506 393 DLCVNLNLLEN 403 (533)
Q Consensus 393 ~~~~~~g~~~~ 403 (533)
..-.++|+-+.
T Consensus 702 ~FEvrHGnedT 712 (835)
T KOG2047|consen 702 EFEVRHGNEDT 712 (835)
T ss_pred HHHHhcCCHHH
Confidence 99999999433
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00054 Score=77.18 Aligned_cols=300 Identities=13% Similarity=0.037 Sum_probs=158.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCC------CCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHH
Q 009506 115 IKLYGTAGNFDGCLNVYEEMKAIGV------KPNM--ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW----NTYA 182 (533)
Q Consensus 115 i~~~~~~g~~~~A~~~~~~m~~~g~------~pd~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~ 182 (533)
...+...|++++|..+++.....-- .+.. .....+-..+...|++++|...+++..+.--..+. ...+
T Consensus 416 a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 495 (903)
T PRK04841 416 AWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATS 495 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHH
Confidence 3344456777777777766543200 0111 11112223345677788888777776652111111 2344
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHc----CC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCC-CC-CHHH
Q 009506 183 SLLRAYGRARYGEDTLSVYREMKEK----GM-QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS----SENC-QP-DSWT 251 (533)
Q Consensus 183 ~ll~~~~~~g~~~~a~~~~~~m~~~----g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~-~p-~~~~ 251 (533)
.+...+...|++++|...+++.... |. .....++..+...+...|++++|.+.+++... .+.. .+ ....
T Consensus 496 ~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 575 (903)
T PRK04841 496 VLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFL 575 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHH
Confidence 5555666778888887777766542 11 11123444555667777888888777766443 1210 01 2233
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCC-CHHHH----
Q 009506 252 FSSMITICSCRGKVSEAEAMFNEMLEA--GFEPN--LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP-DDRFC---- 322 (533)
Q Consensus 252 ~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~---- 322 (533)
+..+...+...|++++|...+.+.... ...+. ...+..+...+...|+.++|.+.+.+.....-.. ....+
T Consensus 576 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~ 655 (903)
T PRK04841 576 LRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANA 655 (903)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHH
Confidence 445555666678888888777775442 11121 2334445556667788888877777764321100 00000
Q ss_pred -HHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHH----HHHHHHhhhhhccHHHHHHHHHhhhcc-------Cc-cchhh
Q 009506 323 -GCLLNVMTQTPK-EELGKLVECVEKSNSKLGYV----VKLLLEEQDIEGDFKKEATELFNSISK-------DV-KKAYC 388 (533)
Q Consensus 323 -~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~----~~~l~~~~~~~g~~~~~a~~~~~~~~~-------~~-~~~~~ 388 (533)
...+..+...|. +.+.+++............+ ...+...+...|+. ++|..++++... .. ...+.
T Consensus 656 ~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~-~~A~~~l~~al~~~~~~g~~~~~a~~~ 734 (903)
T PRK04841 656 DKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQF-DEAEIILEELNENARSLRLMSDLNRNL 734 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHhCchHHHHHHH
Confidence 111223334555 66666655443322111111 13455556666765 677777665432 11 12255
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 009506 389 NCLIDLCVNLNLLENACKLLELGLTLE 415 (533)
Q Consensus 389 ~~li~~~~~~g~~~~A~~l~~~m~~~g 415 (533)
..+..++.+.|+.++|...+.+..+..
T Consensus 735 ~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 735 ILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 666777888888888888888886554
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.36 E-value=8.9e-05 Score=68.88 Aligned_cols=186 Identities=12% Similarity=0.013 Sum_probs=119.1
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCH-H
Q 009506 106 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM----ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL-SPNW-N 179 (533)
Q Consensus 106 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~-~ 179 (533)
..+..+-.+...+.+.|++++|...|+++... .|+. .++..+..++.+.|++++|+..|+++.+..- .+.. .
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 35566777888888899999999999988764 2432 4667778888889999999999999886431 1111 2
Q ss_pred HHHHHHHHHHhc--------CChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHH
Q 009506 180 TYASLLRAYGRA--------RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWT 251 (533)
Q Consensus 180 ~~~~ll~~~~~~--------g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~ 251 (533)
++..+..++.+. |+.++|.+.|+.+.+.... +...+..+..... .. .... ..
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~------~~~~---------~~ 168 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LR------NRLA---------GK 168 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HH------HHHH---------HH
Confidence 344444555443 6677788888887765332 2222221111100 00 0000 01
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC
Q 009506 252 FSSMITICSCRGKVSEAEAMFNEMLEAG--FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 313 (533)
Q Consensus 252 ~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 313 (533)
...+...|.+.|++++|...+....+.. -+.....+..+..++.+.|+.++|..+++.+...
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 1245567888888888888888877642 1223567888888888888888888888877654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.00065 Score=65.55 Aligned_cols=182 Identities=7% Similarity=0.074 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009506 108 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN-MITYNNLLDTMGRAK-RPWQVKTIYKEMTDNGLSPNWNTYASLL 185 (533)
Q Consensus 108 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~ll 185 (533)
..++..+-..+...++.++|+.+++++.+. .|+ ..+|+.--.++...| +++++++.++++.+.. +-+..+|+..-
T Consensus 37 ~~a~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~ 113 (320)
T PLN02789 37 REAMDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRR 113 (320)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHH
Confidence 344555666667788889999999988873 343 345665555566666 5688888888887654 34455666555
Q ss_pred HHHHhcCCh--HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc-
Q 009506 186 RAYGRARYG--EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR- 262 (533)
Q Consensus 186 ~~~~~~g~~--~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~- 262 (533)
..+.+.|.. ++++.+++++.+...+ +..+|+.....+.+.|+++++++.++++.+.+ ..|...|+.....+.+.
T Consensus 114 ~~l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d--~~N~sAW~~R~~vl~~~~ 190 (320)
T PLN02789 114 WLAEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEED--VRNNSAWNQRYFVITRSP 190 (320)
T ss_pred HHHHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC--CCchhHHHHHHHHHHhcc
Confidence 555555552 5667777777776554 77777777777777788888888888877765 45666666655554443
Q ss_pred --CCh----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 009506 263 --GKV----SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 296 (533)
Q Consensus 263 --g~~----~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 296 (533)
|.. ++......++.... +-|...|+-+...+..
T Consensus 191 ~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~ 229 (320)
T PLN02789 191 LLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKD 229 (320)
T ss_pred ccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhc
Confidence 222 23444443443322 2234455555555544
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00012 Score=68.13 Aligned_cols=186 Identities=10% Similarity=-0.010 Sum_probs=126.3
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-H---HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCH--H
Q 009506 141 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN-W---NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV--T 214 (533)
Q Consensus 141 pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~---~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~--~ 214 (533)
.....+..+...+...|++++|...|+++.... |+ . .++..+..+|.+.|++++|...++++.+....... .
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 345567778888889999999999999887643 33 2 46677888888999999999999998876432121 2
Q ss_pred HHHHHHHHHHhc--------CCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 009506 215 LYNTLLAMCADV--------GYTDEAFEIFEDMKSSENCQPD-SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 285 (533)
Q Consensus 215 ~~~~li~~~~~~--------g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 285 (533)
++..+...+.+. |+.++|.+.|+.+.... |+ ...+..+..... . ..... .
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~a~~~~~~----~------~~~~~--------~ 167 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY---PNSEYAPDAKKRMDY----L------RNRLA--------G 167 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC---CCChhHHHHHHHHHH----H------HHHHH--------H
Confidence 344444555543 67888888888887653 33 223322211110 0 00000 1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhCCC-CC-CHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCC
Q 009506 286 VLTSLIQCYGKAQRTDDVVRALNRLPELGI-TP-DDRFCGCLLNVMTQTPK-EELGKLVECVEKSNS 349 (533)
Q Consensus 286 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p-~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~ 349 (533)
....+...|.+.|++++|...|++..+..- .| ....+..+..++...|+ +++...++.+....|
T Consensus 168 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 168 KELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 122456678999999999999999887532 23 34578889999999999 999999988877654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00066 Score=64.84 Aligned_cols=268 Identities=10% Similarity=0.034 Sum_probs=181.6
Q ss_pred CCHHHHHHHHHHHHh--cCChhHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHH
Q 009506 141 PNMITYNNLLDTMGR--AKRPWQVKTIYKEMTD-NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYN 217 (533)
Q Consensus 141 pd~~~~~~li~~~~~--~g~~~~a~~~~~~m~~-~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 217 (533)
|+..+....|.+++. .++...+...+-.+.. .-++-|+.....+.+.+...|+.++|+..|+.....++. ++....
T Consensus 192 ~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD 270 (564)
T KOG1174|consen 192 DHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMD 270 (564)
T ss_pred CCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHH
Confidence 333334444555443 4454555555444433 336678889999999999999999999999988765221 122222
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 009506 218 TLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 297 (533)
Q Consensus 218 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 297 (533)
...-.+.+.|+++....+...+-... +-....|-.-.......++++.|+.+-.+-.+.. ..+...|..=-..+...
T Consensus 271 ~Ya~LL~~eg~~e~~~~L~~~Lf~~~--~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~ 347 (564)
T KOG1174|consen 271 LYAVLLGQEGGCEQDSALMDYLFAKV--KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIAL 347 (564)
T ss_pred HHHHHHHhccCHhhHHHHHHHHHhhh--hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhc
Confidence 22334567788888888887776532 2333344444455566778888888887766532 12344444444577889
Q ss_pred CChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHHHHHHH-HhhhhhccHHHHHHHH
Q 009506 298 QRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLL-EEQDIEGDFKKEATEL 375 (533)
Q Consensus 298 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~~~~~a~~~ 375 (533)
|+.++|.-.|+..+... .-+...|..|+..|...+. .+|........+.-+.....+.+++ ..+.-.....++|..+
T Consensus 348 ~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf 426 (564)
T KOG1174|consen 348 ERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKF 426 (564)
T ss_pred cchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHH
Confidence 99999999999987642 2356799999999999999 9998888877776666666666664 3333333335889999
Q ss_pred Hhhhcc-Ccc-chhhHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009506 376 FNSISK-DVK-KAYCNCLIDLCVNLNLLENACKLLELGLT 413 (533)
Q Consensus 376 ~~~~~~-~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 413 (533)
+++--. .|+ ....+.+...|...|..+.++.+++.-+.
T Consensus 427 ~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~ 466 (564)
T KOG1174|consen 427 AEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI 466 (564)
T ss_pred HHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHh
Confidence 887543 333 44678889999999999999999997654
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.0019 Score=66.63 Aligned_cols=351 Identities=16% Similarity=0.161 Sum_probs=194.7
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 009506 97 TRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP 176 (533)
Q Consensus 97 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 176 (533)
..++...+.-|+.+|..|.-+...+|+++.+.+.|++..-.- --....|+.+-..|..+|.-..|..+++.-....-.|
T Consensus 312 ~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~p 390 (799)
T KOG4162|consen 312 RKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQP 390 (799)
T ss_pred HHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCC
Confidence 344555567899999999999999999999999999876432 2355678888888888888778888777655332113
Q ss_pred -CHHHHHHHHHHHHh-cCChHHH--------------------------------------------------HHHHHHH
Q 009506 177 -NWNTYASLLRAYGR-ARYGEDT--------------------------------------------------LSVYREM 204 (533)
Q Consensus 177 -~~~~~~~ll~~~~~-~g~~~~a--------------------------------------------------~~~~~~m 204 (533)
|...+-..-+.|.+ .+.++++ .+.+++.
T Consensus 391 s~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~a 470 (799)
T KOG4162|consen 391 SDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEA 470 (799)
T ss_pred CcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHH
Confidence 23333222222322 2333333 3333333
Q ss_pred HHcCC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-cCCCC
Q 009506 205 KEKGM-QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE-AGFEP 282 (533)
Q Consensus 205 ~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p 282 (533)
.+.+. .|++..|- ---|+..++++.|.+..++..+.+. ..+...|..|.-.+...+++.+|+.+.+...+ .|..-
T Consensus 471 v~~d~~dp~~if~l--alq~A~~R~l~sAl~~~~eaL~l~~-~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~ 547 (799)
T KOG4162|consen 471 VQFDPTDPLVIFYL--ALQYAEQRQLTSALDYAREALALNR-GDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNH 547 (799)
T ss_pred HhcCCCCchHHHHH--HHHHHHHHhHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhh
Confidence 33222 22222222 2234455666777777766666543 56667777777777777777777777665433 22100
Q ss_pred --------------C----HHHHHHHHHHHH------hcC-----------------ChhHHHHHHHHh--------hhC
Q 009506 283 --------------N----LFVLTSLIQCYG------KAQ-----------------RTDDVVRALNRL--------PEL 313 (533)
Q Consensus 283 --------------~----~~~~~~li~~~~------~~g-----------------~~~~a~~~~~~m--------~~~ 313 (533)
| ..|...++..+- +.+ +..++.+..+.+ ...
T Consensus 548 ~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~ 627 (799)
T KOG4162|consen 548 VLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSA 627 (799)
T ss_pred hhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhc
Confidence 0 011111111111 000 000111111100 000
Q ss_pred C---------CC--CCH------HHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHH
Q 009506 314 G---------IT--PDD------RFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATEL 375 (533)
Q Consensus 314 g---------~~--p~~------~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~ 375 (533)
| +. |+. ..|......+.+.+. +++.-.+.+..+..+-........+..+...|.+ ++|.+.
T Consensus 628 ~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~-~EA~~a 706 (799)
T KOG4162|consen 628 GSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQL-EEAKEA 706 (799)
T ss_pred ccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhh-HHHHHH
Confidence 0 11 111 122233334444555 6666666666666666666667777777777876 777776
Q ss_pred Hhhh-ccCc-cchhhHHHHHHHHhcCCHHHHHH--HHHHHHhccccCCccccCccceeecccccCh-hhHHHHHHHHHHH
Q 009506 376 FNSI-SKDV-KKAYCNCLIDLCVNLNLLENACK--LLELGLTLEVYTDIQSRSPTQWSLHLKSLSL-GAALTALHIWIND 450 (533)
Q Consensus 376 ~~~~-~~~~-~~~~~~~li~~~~~~g~~~~A~~--l~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~-g~~~~a~~~~~~~ 450 (533)
|... ..+| ++....++...+.+.|+..-|.. ++..+.+.+. + +...|-.+-..+.. |....|.+.+
T Consensus 707 f~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp--~----n~eaW~~LG~v~k~~Gd~~~Aaecf--- 777 (799)
T KOG4162|consen 707 FLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP--L----NHEAWYYLGEVFKKLGDSKQAAECF--- 777 (799)
T ss_pred HHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC--C----CHHHHHHHHHHHHHccchHHHHHHH---
Confidence 6554 3344 56688999999999998777777 8888877653 2 33456555555544 7777777776
Q ss_pred HHHHHHcCCCCC
Q 009506 451 LSKALESGEEFP 462 (533)
Q Consensus 451 l~~~~~~g~~~p 462 (533)
.-+++.-+..|
T Consensus 778 -~aa~qLe~S~P 788 (799)
T KOG4162|consen 778 -QAALQLEESNP 788 (799)
T ss_pred -HHHHhhccCCC
Confidence 33344444444
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.0018 Score=62.57 Aligned_cols=203 Identities=10% Similarity=0.055 Sum_probs=114.1
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCH--HHH
Q 009506 156 AKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR-YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT--DEA 232 (533)
Q Consensus 156 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~--~~A 232 (533)
.++.++|+.+.+++++.. +-+..+|+..-.++.+.| .+++++..++++.+...+ +..+|+.....+.+.|+. +++
T Consensus 50 ~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~e 127 (320)
T PLN02789 50 DERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANKE 127 (320)
T ss_pred CCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhHHH
Confidence 355666777777666542 223344554444555555 467777777777666544 455566555555555542 556
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CCh----hHHHH
Q 009506 233 FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA---QRT----DDVVR 305 (533)
Q Consensus 233 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~---g~~----~~a~~ 305 (533)
+++++.+.+.. +-|..+|+...-++.+.|+++++++.++++.+.+. -|...|+.....+.+. |.. ++.+.
T Consensus 128 l~~~~kal~~d--pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~ 204 (320)
T PLN02789 128 LEFTRKILSLD--AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRSPLLGGLEAMRDSELK 204 (320)
T ss_pred HHHHHHHHHhC--cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhccccccccccHHHHHH
Confidence 66666666554 45667777766667777777777777777766542 3444555444443332 222 34555
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHhcC----Ch-HHHHHHHHHHHhcCCChhHHHHHHHHhhhh
Q 009506 306 ALNRLPELGITPDDRFCGCLLNVMTQT----PK-EELGKLVECVEKSNSKLGYVVKLLLEEQDI 364 (533)
Q Consensus 306 ~~~~m~~~g~~p~~~~~~~ll~~~~~~----~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 364 (533)
+..++++... -|...|+-+...+... +. .++..++..+...++.....+..|++.|..
T Consensus 205 y~~~aI~~~P-~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 205 YTIDAILANP-RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHhCC-CCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 5555554431 1334555555555542 22 446666666666666666655666666654
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00011 Score=66.22 Aligned_cols=158 Identities=15% Similarity=0.110 Sum_probs=102.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 009506 112 STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA 191 (533)
Q Consensus 112 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 191 (533)
..+-..+.-.|+-+....+....... ...|....+..+....+.|++.+|+..|++..... ++|..+|+.+--+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 44555555666666666666554332 23355555666777777777777777777766543 56677777777777777
Q ss_pred CChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 009506 192 RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 271 (533)
Q Consensus 192 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 271 (533)
|++++|..-|.+..+.-.. +...+|.|.-.|.-.|+.+.|..++......+ .-|...-..+.......|++++|.++
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~--~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 148 GRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP--AADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred cChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC--CCchHHHHHHHHHHhhcCChHHHHhh
Confidence 7777777777766665333 45566666666667777777777777666654 34666666666677777777777776
Q ss_pred HHH
Q 009506 272 FNE 274 (533)
Q Consensus 272 ~~~ 274 (533)
-..
T Consensus 225 ~~~ 227 (257)
T COG5010 225 AVQ 227 (257)
T ss_pred ccc
Confidence 554
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.0053 Score=62.19 Aligned_cols=178 Identities=14% Similarity=0.129 Sum_probs=116.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009506 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 186 (533)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 186 (533)
+.+.|..+.-.+....++++|++.|......+ +-|...|.-+--.-++.|+++.......+..+.. +-....|..+..
T Consensus 74 S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Av 151 (700)
T KOG1156|consen 74 SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAV 151 (700)
T ss_pred cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHH
Confidence 45567777777777788888888888877643 2345566655555567777777777777776642 234466777888
Q ss_pred HHHhcCChHHHHHHHHHHHHcC-CCcCHHHHHHHHH------HHHhcCCHHHHHHHHHHHHhCCCCCCCHHHH-HHHHHH
Q 009506 187 AYGRARYGEDTLSVYREMKEKG-MQLSVTLYNTLLA------MCADVGYTDEAFEIFEDMKSSENCQPDSWTF-SSMITI 258 (533)
Q Consensus 187 ~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~~~~li~------~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~-~~li~~ 258 (533)
++.-.|+...|..++++..+.. -.|+...|..... ...+.|..++|++.+..-... ..|-..+ .+-...
T Consensus 152 s~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~---i~Dkla~~e~ka~l 228 (700)
T KOG1156|consen 152 AQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ---IVDKLAFEETKADL 228 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH---HHHHHHHhhhHHHH
Confidence 8888899999999999888764 3456666655442 344566777777766554432 2233333 344566
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 009506 259 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 291 (533)
Q Consensus 259 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 291 (533)
+.+.+++++|..++..+.... ||..-|...+
T Consensus 229 ~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l 259 (700)
T KOG1156|consen 229 LMKLGQLEEAVKVYRRLLERN--PDNLDYYEGL 259 (700)
T ss_pred HHHHhhHHhHHHHHHHHHhhC--chhHHHHHHH
Confidence 677778888888887777653 6655554433
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00024 Score=63.71 Aligned_cols=149 Identities=13% Similarity=0.174 Sum_probs=103.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 009506 114 LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY 193 (533)
Q Consensus 114 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 193 (533)
-+-.|.+.|+++.+..-.+.+.. |. . .+...++.++++..++...+.. +.|...|..|...|...|+
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~~----~~-~-------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLAD----PL-H-------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHhC----cc-c-------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCC
Confidence 44567788888776555433321 11 0 1122556667777777766654 5677788888888888888
Q ss_pred hHHHHHHHHHHHHcCCCcCHHHHHHHHHH-HHhcCC--HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 009506 194 GEDTLSVYREMKEKGMQLSVTLYNTLLAM-CADVGY--TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 270 (533)
Q Consensus 194 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~-~~~~g~--~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 270 (533)
+++|...|++..+.... +...+..+..+ +...|+ .++|.+++++..+.+ +.+...+..+...+.+.|++++|..
T Consensus 89 ~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d--P~~~~al~~LA~~~~~~g~~~~Ai~ 165 (198)
T PRK10370 89 YDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTREMIDKALALD--ANEVTALMLLASDAFMQADYAQAIE 165 (198)
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHcCCHHHHHH
Confidence 88888888888776554 66777777765 356666 488888888887765 4567777888888888888888888
Q ss_pred HHHHHHHc
Q 009506 271 MFNEMLEA 278 (533)
Q Consensus 271 ~~~~m~~~ 278 (533)
.|+++.+.
T Consensus 166 ~~~~aL~l 173 (198)
T PRK10370 166 LWQKVLDL 173 (198)
T ss_pred HHHHHHhh
Confidence 88887764
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.0014 Score=73.98 Aligned_cols=266 Identities=12% Similarity=0.032 Sum_probs=164.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCC--C----CCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcC----HHH
Q 009506 148 NLLDTMGRAKRPWQVKTIYKEMTDNG--L----SPN--WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS----VTL 215 (533)
Q Consensus 148 ~li~~~~~~g~~~~a~~~~~~m~~~g--~----~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~----~~~ 215 (533)
.....+...|+++++..++.+..+.- . .+. ......+-..+...|++++|...+++..+.-...+ ...
T Consensus 414 ~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a 493 (903)
T PRK04841 414 LQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVA 493 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 34445567889999999888775421 0 111 12222333455678999999999998776311112 234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH----cCCC--C-CH
Q 009506 216 YNTLLAMCADVGYTDEAFEIFEDMKSS----ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE----AGFE--P-NL 284 (533)
Q Consensus 216 ~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~--p-~~ 284 (533)
.+.+...+...|++++|...+++.... |.......++..+...+...|++++|...+++..+ .+.. + ..
T Consensus 494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 573 (903)
T PRK04841 494 TSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHE 573 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHH
Confidence 556666778899999999999877542 21011234556677788899999999999888654 2221 1 22
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhhC--CCCCC--HHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCCh---hHH-H
Q 009506 285 FVLTSLIQCYGKAQRTDDVVRALNRLPEL--GITPD--DRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKL---GYV-V 355 (533)
Q Consensus 285 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~--~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~---~~~-~ 355 (533)
..+..+...+...|++++|...+.+.... ...+. ...+..+.......|+ ++|...++......... ... .
T Consensus 574 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~ 653 (903)
T PRK04841 574 FLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIA 653 (903)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhh
Confidence 34445556677789999999998887543 11122 2234445556667888 88888777765421111 111 1
Q ss_pred ---HHHHHhhhhhccHHHHHHHHHhhhccCc--cch----hhHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 009506 356 ---KLLLEEQDIEGDFKKEATELFNSISKDV--KKA----YCNCLIDLCVNLNLLENACKLLELGLTL 414 (533)
Q Consensus 356 ---~~l~~~~~~~g~~~~~a~~~~~~~~~~~--~~~----~~~~li~~~~~~g~~~~A~~l~~~m~~~ 414 (533)
......+...|+. +.|...+....... ... .+..+..++...|+.++|..++++....
T Consensus 654 ~~~~~~~~~~~~~g~~-~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 654 NADKVRLIYWQMTGDK-EAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNEN 720 (903)
T ss_pred HHHHHHHHHHHHCCCH-HHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1112333345655 77888776654321 111 1346777889999999999999988654
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.0007 Score=72.09 Aligned_cols=162 Identities=15% Similarity=0.096 Sum_probs=125.0
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHH
Q 009506 139 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN-WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYN 217 (533)
Q Consensus 139 ~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 217 (533)
...+...+-.|.....+.|.+++|..+++...+. .|| ......+...+.+.+++++|...+++....... +....+
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~ 158 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREIL 158 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHH
Confidence 3456788888888888999999999999998875 354 566777888889999999999999999887655 677777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 009506 218 TLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 297 (533)
Q Consensus 218 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 297 (533)
.+..++.+.|++++|.++|+++...+ +-+..++..+...+-..|+.++|...|+...+.- .+....|+.++.
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~--p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~~----- 230 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQH--PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRLV----- 230 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHHH-----
Confidence 88888889999999999999988743 4458888899999999999999999999887632 244556555443
Q ss_pred CChhHHHHHHHHhhh
Q 009506 298 QRTDDVVRALNRLPE 312 (533)
Q Consensus 298 g~~~~a~~~~~~m~~ 312 (533)
++..-..+++++.-
T Consensus 231 -~~~~~~~~~~~~~~ 244 (694)
T PRK15179 231 -DLNADLAALRRLGV 244 (694)
T ss_pred -HHHHHHHHHHHcCc
Confidence 33445556666643
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.0015 Score=58.92 Aligned_cols=179 Identities=14% Similarity=0.119 Sum_probs=113.9
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 009506 164 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 243 (533)
Q Consensus 164 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 243 (533)
++.+.+.......|......-...|++.|++++|++...... +....-.=+..+.+..+.+-|.+.+++|.+
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~-- 165 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQ-- 165 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--
Confidence 334444444334444444444556778888888887776521 222222233445666778888888888876
Q ss_pred CCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCH
Q 009506 244 NCQPDSWTFSSMITICSC----RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 319 (533)
Q Consensus 244 ~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 319 (533)
-.+..|.+-|..++.+ .+.+.+|.-+|++|-+ ...|+..+.+-+..++...|++++|..++++....... ++
T Consensus 166 --ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~-k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dp 241 (299)
T KOG3081|consen 166 --IDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSE-KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DP 241 (299)
T ss_pred --cchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc-ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CH
Confidence 3455666655555543 4568888888888755 24688888888888888888888888888888766433 45
Q ss_pred HHHHHHHHHHhcCCh--HHHHHHHHHHHhcCCChhHH
Q 009506 320 RFCGCLLNVMTQTPK--EELGKLVECVEKSNSKLGYV 354 (533)
Q Consensus 320 ~~~~~ll~~~~~~~~--~~a~~~~~~~~~~~~~~~~~ 354 (533)
.+...++..-...|. +...+.+.++....|....+
T Consensus 242 etL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~v 278 (299)
T KOG3081|consen 242 ETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFV 278 (299)
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHH
Confidence 555555555555555 55666777777777765543
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.0067 Score=60.18 Aligned_cols=128 Identities=16% Similarity=0.103 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCC-CHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCChhHHHHHHHHhhh
Q 009506 285 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITP-DDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQD 363 (533)
Q Consensus 285 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 363 (533)
.+|-.++..-.+..-+..|..+|.+..+.+..+ +..+.++++..++....+.|.++|+.=.+.-++...++...++.+.
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~ 446 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLS 446 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 356666777777888899999999999988887 6678899999988887799999999887777777777655555555
Q ss_pred hhccHHHHHHHHHhhhccC-----ccchhhHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009506 364 IEGDFKKEATELFNSISKD-----VKKAYCNCLIDLCVNLNLLENACKLLELGLT 413 (533)
Q Consensus 364 ~~g~~~~~a~~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 413 (533)
..++. ..+..+|++.... .....|+.+|+--..-|++..+.++-+++..
T Consensus 447 ~lNdd-~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 447 HLNDD-NNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HhCcc-hhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 55654 7899999987643 1345999999999999999999999888753
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.0004 Score=62.32 Aligned_cols=149 Identities=11% Similarity=0.128 Sum_probs=112.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCH
Q 009506 150 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 229 (533)
Q Consensus 150 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 229 (533)
+..|...|+++.+....+.+.. |. ..|...++.+++...++...+.... |...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCH
Confidence 3467888888887555433221 11 0122356667777778877776554 888999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHH-HHhcCC--hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 009506 230 DEAFEIFEDMKSSENCQPDSWTFSSMITI-CSCRGK--VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 306 (533)
Q Consensus 230 ~~A~~~~~~m~~~~~~~p~~~~~~~li~~-~~~~g~--~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 306 (533)
++|...|++..+.. +.+...+..+..+ |...|+ .++|.+++++..+.+ +-+...+..+...+.+.|++++|...
T Consensus 90 ~~A~~a~~~Al~l~--P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~ 166 (198)
T PRK10370 90 DNALLAYRQALQLR--GENAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIEL 166 (198)
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999988865 4577888888776 467777 599999999988864 23677888888899999999999999
Q ss_pred HHHhhhCC
Q 009506 307 LNRLPELG 314 (533)
Q Consensus 307 ~~~m~~~g 314 (533)
|+++.+..
T Consensus 167 ~~~aL~l~ 174 (198)
T PRK10370 167 WQKVLDLN 174 (198)
T ss_pred HHHHHhhC
Confidence 99998763
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.0007 Score=61.90 Aligned_cols=193 Identities=11% Similarity=0.091 Sum_probs=103.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH-HHHHH
Q 009506 111 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL-LRAYG 189 (533)
Q Consensus 111 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l-l~~~~ 189 (533)
+.+.|..+.+..++.+|++++..-.++. +.+......|..+|....++..|...|+++... .|...-|... ...+-
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 5556666667777888888777766543 226666777777777777888888888777653 3554444322 33445
Q ss_pred hcCChHHHHHHHHHHHHcCCCcCHHHHHHHHH--HHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHH
Q 009506 190 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLA--MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 267 (533)
Q Consensus 190 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 267 (533)
+.+.+.+|+.+...|.+. ++...-..-+. .....+++..+..++++....| +..+.+.......+.|+++.
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en----~Ad~~in~gCllykegqyEa 162 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN----EADGQINLGCLLYKEGQYEA 162 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC----ccchhccchheeeccccHHH
Confidence 566777777777766543 11111111111 1223455555555555554322 22233333333445566666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCC
Q 009506 268 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 314 (533)
Q Consensus 268 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 314 (533)
|.+-|+...+-+-.-....|+.-+..| +.|+.+.|++...+++++|
T Consensus 163 AvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG 208 (459)
T KOG4340|consen 163 AVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERG 208 (459)
T ss_pred HHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhh
Confidence 666666555532222344455444333 3455566666655555544
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.15 E-value=4e-06 Score=51.64 Aligned_cols=33 Identities=30% Similarity=0.609 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 009506 110 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 142 (533)
Q Consensus 110 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd 142 (533)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 466666666666666666666666666666665
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.13 E-value=4.5e-06 Score=51.41 Aligned_cols=33 Identities=36% Similarity=0.688 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 009506 145 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 177 (533)
Q Consensus 145 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 177 (533)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577777777777777777777777777777776
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.0062 Score=61.08 Aligned_cols=48 Identities=15% Similarity=0.150 Sum_probs=22.9
Q ss_pred hcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 009506 155 RAKRPWQVKTIYKEMTDNGLSPN-WNTYASLLRAYGRARYGEDTLSVYREMKEK 207 (533)
Q Consensus 155 ~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 207 (533)
+.++.++|+..++ |..++ ..+...-...+.+.|++++|..+|+.+.+.
T Consensus 91 rlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn 139 (652)
T KOG2376|consen 91 RLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKN 139 (652)
T ss_pred HcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4455555555544 22222 223333344455556666666666655443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00032 Score=59.47 Aligned_cols=88 Identities=8% Similarity=-0.061 Sum_probs=35.0
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHH
Q 009506 151 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 230 (533)
Q Consensus 151 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 230 (533)
.++...|++++|...|+...... +.+...|..+..++.+.|++++|...|++..+.... +...+..+..++...|+++
T Consensus 32 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~-~~~a~~~lg~~l~~~g~~~ 109 (144)
T PRK15359 32 YASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS-HPEPVYQTGVCLKMMGEPG 109 (144)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHcCCHH
Confidence 33334444444444444443322 223333444444444444444444444444433221 3333444444444444444
Q ss_pred HHHHHHHHHH
Q 009506 231 EAFEIFEDMK 240 (533)
Q Consensus 231 ~A~~~~~~m~ 240 (533)
+|.+.|+...
T Consensus 110 eAi~~~~~Al 119 (144)
T PRK15359 110 LAREAFQTAI 119 (144)
T ss_pred HHHHHHHHHH
Confidence 4444444433
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.11 E-value=4.2e-06 Score=51.22 Aligned_cols=29 Identities=31% Similarity=0.590 Sum_probs=11.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 009506 146 YNNLLDTMGRAKRPWQVKTIYKEMTDNGL 174 (533)
Q Consensus 146 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 174 (533)
||.+|.+|++.|+++.|.++|++|.+.|+
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~~~gv 32 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMKEQGV 32 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 33333333333333333333333333333
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.10 E-value=4.9e-06 Score=50.92 Aligned_cols=33 Identities=36% Similarity=0.749 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 009506 109 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 141 (533)
Q Consensus 109 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 141 (533)
.+|+.+|++|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999987
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0002 Score=60.63 Aligned_cols=110 Identities=6% Similarity=-0.100 Sum_probs=92.0
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 009506 104 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 183 (533)
Q Consensus 104 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 183 (533)
+..|+..+..+...+.+.|++++|...|+...... +.+...|..+..++.+.|++++|+..|++..+.. +.+..++..
T Consensus 20 l~~~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~ 97 (144)
T PRK15359 20 LSVDPETVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQ 97 (144)
T ss_pred HHcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHH
Confidence 34455556678888899999999999999998753 3478889999999999999999999999999864 567889999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHH
Q 009506 184 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLY 216 (533)
Q Consensus 184 ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 216 (533)
+..++.+.|++++|...|+...+.... +...|
T Consensus 98 lg~~l~~~g~~~eAi~~~~~Al~~~p~-~~~~~ 129 (144)
T PRK15359 98 TGVCLKMMGEPGLAREAFQTAIKMSYA-DASWS 129 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHH
Confidence 999999999999999999999886433 33444
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0014 Score=69.91 Aligned_cols=183 Identities=10% Similarity=0.061 Sum_probs=142.8
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 009506 104 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN-MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 182 (533)
Q Consensus 104 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 182 (533)
+..++..+-.|.....+.|.+++|..+++...+. .|| ......+...+.+.+++++|+..+++..... +-+.....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~ 158 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREIL 158 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHH
Confidence 3456888999999999999999999999999984 565 4566778889999999999999999999865 34567788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc
Q 009506 183 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 262 (533)
Q Consensus 183 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 262 (533)
.+..++.+.|++++|..+|++....+.. +..++..+...+.+.|+.++|...|+...+.. .+....|+..+.-
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~---- 231 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDAI--GDGARKLTRRLVD---- 231 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh--CcchHHHHHHHHH----
Confidence 8888999999999999999999985433 58889999999999999999999999988764 4566666665533
Q ss_pred CChHHHHHHHHHHHH----cCCCCCHHHHHHHHHHHHhcC
Q 009506 263 GKVSEAEAMFNEMLE----AGFEPNLFVLTSLIQCYGKAQ 298 (533)
Q Consensus 263 g~~~~A~~~~~~m~~----~g~~p~~~~~~~li~~~~~~g 298 (533)
+..-...++.+.- .|......+...+|.-|.+..
T Consensus 232 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (694)
T PRK15179 232 --LNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRRR 269 (694)
T ss_pred --HHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhcC
Confidence 3344455555543 233444556667777776543
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00035 Score=71.39 Aligned_cols=213 Identities=13% Similarity=0.074 Sum_probs=142.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009506 110 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 189 (533)
Q Consensus 110 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 189 (533)
.=-.+...+...|-...|+.+|+++. .|.-+|.+|...|+..+|..+..+-.++ +||...|..+.+...
T Consensus 400 ~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLH 468 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhcc
Confidence 33456667778888888888888775 4777888888888888888888877773 588888888888777
Q ss_pred hcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 009506 190 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 269 (533)
Q Consensus 190 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 269 (533)
.-.-+++|.++++....+ .-..+.....+.++++++.+.|+.-.+.+ +--..+|-.+..+..+.++++.|.
T Consensus 469 d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n--plq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN--PLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred ChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC--ccchhHHHhccHHHHHHhhhHHHH
Confidence 766777777777654332 11111112233577777777777665544 345566777777777777777777
Q ss_pred HHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHH
Q 009506 270 AMFNEMLEAGFEPN-LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVE 345 (533)
Q Consensus 270 ~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~ 345 (533)
+.|..-..- .|| ...||.+-.+|.+.++-.+|...+.+..+.+.. +-..|...+....+-|. ++|.+.+..+.
T Consensus 540 ~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 540 KAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 777765542 243 567777777777777777777777777666522 33344444555556666 66666666544
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00067 Score=63.44 Aligned_cols=121 Identities=15% Similarity=0.090 Sum_probs=69.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH-----------
Q 009506 114 LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA----------- 182 (533)
Q Consensus 114 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~----------- 182 (533)
+..++.+.|++++|+..|+-+.+. -.++...+-.|.-++.-.|.+.+|..+-.... -++..-.
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~-----k~pL~~RLlfhlahklnd 136 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLGQYIEAKSIAEKAP-----KTPLCIRLLFHLAHKLND 136 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHHHHHHHHHHHhhCC-----CChHHHHHHHHHHHHhCc
Confidence 445667899999999999988764 34566666666666666677777665543221 1111111
Q ss_pred -------------------HHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHhC
Q 009506 183 -------------------SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSS 242 (533)
Q Consensus 183 -------------------~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~ 242 (533)
+|....-..-.+.+|++++.+....+ |.-...|.-+ -+|.+..-++.+.++++-..+.
T Consensus 137 Ek~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q 214 (557)
T KOG3785|consen 137 EKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ 214 (557)
T ss_pred HHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh
Confidence 12222222234667777777766542 3344444333 3456667777777777655543
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0025 Score=62.57 Aligned_cols=184 Identities=14% Similarity=0.012 Sum_probs=131.2
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 009506 105 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 184 (533)
Q Consensus 105 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 184 (533)
.|+...+...+.+......-..+-.++.+-.+. .-...-|..-+ .+...|.+++|+..++.+... .+-|.......
T Consensus 271 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~A~-~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~ 346 (484)
T COG4783 271 SPDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGRAL-QTYLAGQYDEALKLLQPLIAA-QPDNPYYLELA 346 (484)
T ss_pred CccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHHHH-HHHHhcccchHHHHHHHHHHh-CCCCHHHHHHH
Confidence 566777777777655544444444444333321 12223343333 345688899999999998865 24455666667
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC
Q 009506 185 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 264 (533)
Q Consensus 185 l~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 264 (533)
...+.+.++.++|.+.++.+...... .....-.+..+|.+.|+..+|+.++++..... +-|...|..|..+|...|+
T Consensus 347 ~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~~g~~~eai~~L~~~~~~~--p~dp~~w~~LAqay~~~g~ 423 (484)
T COG4783 347 GDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLKGGKPQEAIRILNRYLFND--PEDPNGWDLLAQAYAELGN 423 (484)
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC--CCCchHHHHHHHHHHHhCc
Confidence 78889999999999999999887433 25666677888999999999999998887765 6788999999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC
Q 009506 265 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 313 (533)
Q Consensus 265 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 313 (533)
..++..-..+ +|...|+++.|...+....+.
T Consensus 424 ~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 424 RAEALLARAE------------------GYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred hHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHHHh
Confidence 8888776655 345678888888888887665
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0017 Score=70.14 Aligned_cols=225 Identities=12% Similarity=0.089 Sum_probs=138.4
Q ss_pred HHHHhhcCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCChhHHHHH--------
Q 009506 96 DTRARNEKWRI-DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT-YNNLLDTMGRAKRPWQVKTI-------- 165 (533)
Q Consensus 96 ~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~-~~~li~~~~~~g~~~~a~~~-------- 165 (533)
+.+..-..+.| +...+..||..|...+++++|.++.+...+. .|+... |-.+...+.+.++..++..+
T Consensus 18 ~~r~~~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~ 95 (906)
T PRK14720 18 WTRADANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQ 95 (906)
T ss_pred hhhcccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhhhhhhhccc
Confidence 33444445544 6777999999999999999999999977663 354433 22222245555555544433
Q ss_pred ----------HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 009506 166 ----------YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 235 (533)
Q Consensus 166 ----------~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 235 (533)
...|... .-+...+-.|..+|-+.|+.+++..+++++.+.... |..+.|.+...|... ++++|+++
T Consensus 96 ~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~KA~~m 171 (906)
T PRK14720 96 NLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEKAITY 171 (906)
T ss_pred ccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHHHHHH
Confidence 2233221 123356677788888888888898888888888744 788888888888888 88888888
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHH-----HhcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 009506 236 FEDMKSSENCQPDSWTFSSMITIC-----SCRGKVSEAEAMFNEMLEA-GFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 309 (533)
Q Consensus 236 ~~~m~~~~~~~p~~~~~~~li~~~-----~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 309 (533)
+.+...... +..-|+.+.... ..-.+++.-.++.+.+... |...-+.++-.+-..|-..++++++..+++.
T Consensus 172 ~~KAV~~~i---~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~ 248 (906)
T PRK14720 172 LKKAIYRFI---KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKK 248 (906)
T ss_pred HHHHHHHHH---hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 877665311 111222222111 1112333334444443332 3334455566666777788888888888888
Q ss_pred hhhCCCCCCHHHHHHHHHHHh
Q 009506 310 LPELGITPDDRFCGCLLNVMT 330 (533)
Q Consensus 310 m~~~g~~p~~~~~~~ll~~~~ 330 (533)
+.+..-. |.....-++..|.
T Consensus 249 iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 249 ILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HHhcCCc-chhhHHHHHHHHH
Confidence 8775433 3345555555555
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0032 Score=66.63 Aligned_cols=267 Identities=14% Similarity=0.063 Sum_probs=159.2
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009506 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 186 (533)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 186 (533)
+....+.||.- -+.+++|.++-++.. ....|..+..+-.+.|...+|++-|-+. -|+..|.-+++
T Consensus 1077 n~~A~~VLie~---i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~ 1141 (1666)
T KOG0985|consen 1077 NVSAIQVLIEN---IGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVID 1141 (1666)
T ss_pred cHHHHHHHHHH---hhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHH
Confidence 44444444443 467777777766653 3456888888888888888887666332 36677888888
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChH
Q 009506 187 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 266 (533)
Q Consensus 187 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 266 (533)
...+.|.+++-.+.+...+++.-+|.+. +.||-+|++.++..+.++++. -||......+.+-|...|.++
T Consensus 1142 ~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~--------gpN~A~i~~vGdrcf~~~~y~ 1211 (1666)
T KOG0985|consen 1142 VASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA--------GPNVANIQQVGDRCFEEKMYE 1211 (1666)
T ss_pred HHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc--------CCCchhHHHHhHHHhhhhhhH
Confidence 8888888888888887777766655544 467888888888877766642 466666666666666666666
Q ss_pred HHHHHHHHHHHc--------------------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHH
Q 009506 267 EAEAMFNEMLEA--------------------GFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 326 (533)
Q Consensus 267 ~A~~~~~~m~~~--------------------g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 326 (533)
.|.-+|...... .-.-+..||-.+-.+|...+.+.-| +|.-.++.....-...|+
T Consensus 1212 aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli 1286 (1666)
T KOG0985|consen 1212 AAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELI 1286 (1666)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHH
Confidence 666665443110 0012344454444444444333222 222333444455567778
Q ss_pred HHHhcCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhh--ccHHHHHHHHHhh-hccC------ccchhhHHHHHHHH
Q 009506 327 NVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIE--GDFKKEATELFNS-ISKD------VKKAYCNCLIDLCV 396 (533)
Q Consensus 327 ~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~~a~~~~~~-~~~~------~~~~~~~~li~~~~ 396 (533)
..|...|. ++...+++.........-.+.+-|...|.+- ..+ .+-+++|-. +... .....|+.+.-.|.
T Consensus 1287 ~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYskykp~km-~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~ 1365 (1666)
T KOG0985|consen 1287 EYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKYKPEKM-MEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYD 1365 (1666)
T ss_pred HHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcCHHHH-HHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 88888887 7777777765544444444445555555543 222 223334332 2211 12336777777777
Q ss_pred hcCCHHHH
Q 009506 397 NLNLLENA 404 (533)
Q Consensus 397 ~~g~~~~A 404 (533)
+-..++.|
T Consensus 1366 ~y~eyDNA 1373 (1666)
T KOG0985|consen 1366 KYEEYDNA 1373 (1666)
T ss_pred hhhhhhHH
Confidence 76666665
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0002 Score=73.05 Aligned_cols=193 Identities=13% Similarity=0.071 Sum_probs=156.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009506 108 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 187 (533)
Q Consensus 108 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 187 (533)
...|.-+|.+|...|+..+|..+..+..++ +||...|..+.+.....--+++|.++++....+ .-..+...
T Consensus 424 lemw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~ 494 (777)
T KOG1128|consen 424 LEMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALL 494 (777)
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccc
Confidence 456889999999999999999999887773 689999999999988888899999999876543 11122222
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHH
Q 009506 188 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 267 (533)
Q Consensus 188 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 267 (533)
..+.+++.++.+.|+.-.+... .-..+|-.+..+..+.+++..|.+.|....... +.+...||++-.+|.+.|+-.+
T Consensus 495 ~~~~~~fs~~~~hle~sl~~np-lq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~--Pd~~eaWnNls~ayi~~~~k~r 571 (777)
T KOG1128|consen 495 ILSNKDFSEADKHLERSLEINP-LQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLE--PDNAEAWNNLSTAYIRLKKKKR 571 (777)
T ss_pred cccchhHHHHHHHHHHHhhcCc-cchhHHHhccHHHHHHhhhHHHHHHHHHHhhcC--CCchhhhhhhhHHHHHHhhhHH
Confidence 2336899999999987666532 257788888889999999999999999988753 4467889999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC
Q 009506 268 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 313 (533)
Q Consensus 268 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 313 (533)
|...+.+..+.+ .-+...|...+-...+.|.+++|++.+.++.+.
T Consensus 572 a~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 572 AFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 999999999877 455666777777778999999999999988653
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.002 Score=58.24 Aligned_cols=158 Identities=13% Similarity=0.041 Sum_probs=92.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc
Q 009506 147 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 226 (533)
Q Consensus 147 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 226 (533)
..+-..+.-.|+-+....+....... ..-|....+.+++...+.|++..|...|.+..... ++|..+|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 33444555556655555555443321 12344455556666666677777776666665543 23666666666666677
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 009506 227 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 306 (533)
Q Consensus 227 g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 306 (533)
|+.++|..-|.+..+.. .-+...++.|.-.|.-.|+++.|..++......+ .-|...-..|.-.....|++++|..+
T Consensus 148 Gr~~~Ar~ay~qAl~L~--~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 148 GRFDEARRAYRQALELA--PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred cChhHHHHHHHHHHHhc--cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhh
Confidence 77776666666665543 2345556666666666666666666666655543 22455555555566666666666665
Q ss_pred HHH
Q 009506 307 LNR 309 (533)
Q Consensus 307 ~~~ 309 (533)
...
T Consensus 225 ~~~ 227 (257)
T COG5010 225 AVQ 227 (257)
T ss_pred ccc
Confidence 443
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00031 Score=58.83 Aligned_cols=93 Identities=12% Similarity=0.119 Sum_probs=41.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh
Q 009506 182 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 261 (533)
Q Consensus 182 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 261 (533)
..+...+.+.|++++|.+.|+.+...+.. +...|..+...+.+.|++++|.++|+...+.+ +.+...+..+...|..
T Consensus 21 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 21 YALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALD--PDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCChHHHHHHHHHHHH
Confidence 33344444444444444444444443222 34444444444444444444444444444332 2334444444444444
Q ss_pred cCChHHHHHHHHHHHH
Q 009506 262 RGKVSEAEAMFNEMLE 277 (533)
Q Consensus 262 ~g~~~~A~~~~~~m~~ 277 (533)
.|++++|.+.|+...+
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 98 LGEPESALKALDLAIE 113 (135)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 4444444444444443
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0035 Score=58.81 Aligned_cols=293 Identities=14% Similarity=0.088 Sum_probs=180.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 009506 112 STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD-TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 190 (533)
Q Consensus 112 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~-~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 190 (533)
-+|.+...-.-.+.+|+++|.+.... .|+-...|.-+. +|.+..-++-+.++++--++. ++-+....|....-..|
T Consensus 155 LSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fR 231 (557)
T KOG3785|consen 155 LSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFR 231 (557)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhh
Confidence 34555555556899999999998864 366666666554 456777788888888877754 22333444433322222
Q ss_pred --cCCh---------------------------------HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 009506 191 --ARYG---------------------------------EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 235 (533)
Q Consensus 191 --~g~~---------------------------------~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 235 (533)
.|+. +.|++++--+.+. -...--.|+--|.+.+++.+|..+
T Consensus 232 l~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~----IPEARlNL~iYyL~q~dVqeA~~L 307 (557)
T KOG3785|consen 232 LINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKH----IPEARLNLIIYYLNQNDVQEAISL 307 (557)
T ss_pred hhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhh----ChHhhhhheeeecccccHHHHHHH
Confidence 1222 2222222222111 111222344557889999999998
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHhcC-------ChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChhHHHHHH
Q 009506 236 FEDMKSSENCQPDSWTFSSMITICSCRG-------KVSEAEAMFNEMLEAGFEPNL-FVLTSLIQCYGKAQRTDDVVRAL 307 (533)
Q Consensus 236 ~~~m~~~~~~~p~~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~ 307 (533)
.+++.- .+..-|-.-.-.++..| .+.-|.+.|+..-+.+..-|. ..--++..++.-..++|+++-++
T Consensus 308 ~Kdl~P-----ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~Yl 382 (557)
T KOG3785|consen 308 CKDLDP-----TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYL 382 (557)
T ss_pred HhhcCC-----CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 877642 22333322222233333 356677777665555444332 23445666666677888888888
Q ss_pred HHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHHH-HHHHHhhhhhccHHHHHHHHHhhhccCccc
Q 009506 308 NRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVV-KLLLEEQDIEGDFKKEATELFNSISKDVKK 385 (533)
Q Consensus 308 ~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~~a~~~~~~~~~~~~~ 385 (533)
+.+...= ..|....-.+..+.+..|. .+++++|-.+........... .+|.++|..++.- +-|+++|-++....+.
T Consensus 383 nSi~sYF-~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP-~lAW~~~lk~~t~~e~ 460 (557)
T KOG3785|consen 383 NSIESYF-TNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKP-QLAWDMMLKTNTPSER 460 (557)
T ss_pred HHHHHHh-cCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCc-hHHHHHHHhcCCchhH
Confidence 8877653 3344433448888888898 999999887765554444444 8889999988865 8899999888765555
Q ss_pred hh-hHHHHHHHHhcCCHHHHHHHHHHHHhccccC
Q 009506 386 AY-CNCLIDLCVNLNLLENACKLLELGLTLEVYT 418 (533)
Q Consensus 386 ~~-~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~ 418 (533)
.+ ...+..-|.+++.+=-|-+.|+.+...+..|
T Consensus 461 fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 461 FSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 43 4555667999999888888888776555433
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0011 Score=59.88 Aligned_cols=116 Identities=14% Similarity=0.090 Sum_probs=54.4
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh----cC
Q 009506 152 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD----VG 227 (533)
Q Consensus 152 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g 227 (533)
.|...|++++|++..+.. -+......=+..+.|..+++-|.+.++.|.+.. +..|.+.|..++.+ .+
T Consensus 117 i~~~~~~~deAl~~~~~~------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~gge 187 (299)
T KOG3081|consen 117 IYMHDGDFDEALKALHLG------ENLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGE 187 (299)
T ss_pred HhhcCCChHHHHHHHhcc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccch
Confidence 344555555555554431 111222222333444455555555555555432 33344433333332 23
Q ss_pred CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 009506 228 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA 278 (533)
Q Consensus 228 ~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 278 (533)
.+.+|.-+|++|.++- .|+..+.+-...++...|++++|..++++....
T Consensus 188 k~qdAfyifeE~s~k~--~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 188 KIQDAFYIFEELSEKT--PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred hhhhHHHHHHHHhccc--CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 4555555555555442 455555555555555555555555555555443
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00016 Score=63.44 Aligned_cols=91 Identities=22% Similarity=0.372 Sum_probs=68.1
Q ss_pred CCCCCHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------------hhH
Q 009506 103 KWRIDPNAFSTLIKLYGTA-----GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR----------------PWQ 161 (533)
Q Consensus 103 g~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~----------------~~~ 161 (533)
+-..|-.+|..+|+.|.+. |..+=....+..|.+.|+..|..+|+.||+.+-+..- -+-
T Consensus 42 ~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c 121 (228)
T PF06239_consen 42 GQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQEC 121 (228)
T ss_pred hccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHH
Confidence 3467889999999999764 7788888888999999999999999999998865221 233
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 009506 162 VKTIYKEMTDNGLSPNWNTYASLLRAYGRARY 193 (533)
Q Consensus 162 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 193 (533)
|++++++|...|+-||..|+..|++.+++.+.
T Consensus 122 ~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 122 AIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 66666666666666666666666666655443
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00098 Score=67.96 Aligned_cols=191 Identities=18% Similarity=0.242 Sum_probs=116.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC
Q 009506 185 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 264 (533)
Q Consensus 185 l~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 264 (533)
+.+..+...+.+|+.+++.+.+... -..-|..+.+.|+..|+++.|+++|-+.. .++-.|.+|.+.|+
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~----------~~~dai~my~k~~k 806 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD----------LFKDAIDMYGKAGK 806 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc----------hhHHHHHHHhcccc
Confidence 4455667778888888887776532 23346667778888889888888885432 25567888889999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHH
Q 009506 265 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVEC 343 (533)
Q Consensus 265 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~ 343 (533)
|++|.++-.+. .|-......|.+-..-+.+.|++.+|.++|-.+.+ |+. .|..|-+.|. ++..++.+.
T Consensus 807 w~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~~-----aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 807 WEDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PDK-----AIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred HHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccC----chH-----HHHHHHhhCcchHHHHHHHH
Confidence 98888876553 33334556666666677788888888887765432 332 3556666666 555554442
Q ss_pred HHhcCCChhHHH-HHHHHhhhhhccHHHHHHHHHhhhccCccchhhHHHHHHHHhcCCHHHHHHHH
Q 009506 344 VEKSNSKLGYVV-KLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLL 408 (533)
Q Consensus 344 ~~~~~~~~~~~~-~~l~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 408 (533)
..++.-.-. ..+...+...|++ +.|..-|-+.. -|.+-++.|...+.+++|.++-
T Consensus 876 ---~h~d~l~dt~~~f~~e~e~~g~l-kaae~~flea~------d~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 876 ---HHGDHLHDTHKHFAKELEAEGDL-KAAEEHFLEAG------DFKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred ---hChhhhhHHHHHHHHHHHhccCh-hHHHHHHHhhh------hHHHHHHHhhhhhhHHHHHHHH
Confidence 222222222 4445555555655 55555544333 2445555555566666555443
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0002 Score=55.76 Aligned_cols=80 Identities=21% Similarity=0.338 Sum_probs=64.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCC--------hhHHHHHHHHHHHCCCCCCHHHH
Q 009506 111 FSTLIKLYGTAGNFDGCLNVYEEMKAIGV-KPNMITYNNLLDTMGRAKR--------PWQVKTIYKEMTDNGLSPNWNTY 181 (533)
Q Consensus 111 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~pd~~~~~~li~~~~~~g~--------~~~a~~~~~~m~~~g~~p~~~~~ 181 (533)
-...|.-+...+++.....+|+.+++.|+ .|++.+||.++.+.++... .-..+.+|+.|+..+++|+..||
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34456666677999999999999999999 8999999999998876532 33477888888888888888888
Q ss_pred HHHHHHHHh
Q 009506 182 ASLLRAYGR 190 (533)
Q Consensus 182 ~~ll~~~~~ 190 (533)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 888887754
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00044 Score=57.90 Aligned_cols=118 Identities=12% Similarity=0.128 Sum_probs=89.4
Q ss_pred HHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 009506 200 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 279 (533)
Q Consensus 200 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 279 (533)
.|+........ +......+...+...|++++|.+.|+.+...+ +.+...|..+...|.+.|++++|..+++...+.+
T Consensus 5 ~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLLGLDSE-QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD--PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHHcCChh-hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34445444322 44556667778888999999999999987765 5578888889999999999999999999877654
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHH
Q 009506 280 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 323 (533)
Q Consensus 280 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 323 (533)
+.+...+..+...|...|+.++|...|++..+.. |+...+.
T Consensus 82 -p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~ 122 (135)
T TIGR02552 82 -PDDPRPYFHAAECLLALGEPESALKALDLAIEIC--GENPEYS 122 (135)
T ss_pred -CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--cccchHH
Confidence 4456777778888999999999999999887753 5544433
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.04 Score=58.14 Aligned_cols=199 Identities=14% Similarity=0.154 Sum_probs=119.0
Q ss_pred HHHHHHHH--HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009506 111 FSTLIKLY--GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 188 (533)
Q Consensus 111 ~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 188 (533)
|...+.++ .+.|+.++|..+++.....+.. |..|...+-..|-+.++.++|..+|++.... -|+......+..+|
T Consensus 44 ~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmay 120 (932)
T KOG2053|consen 44 YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAY 120 (932)
T ss_pred HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHH
Confidence 33344444 4677788888777777655444 7777777777788888888888888877764 36677777777777
Q ss_pred HhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC----------CHHHHHHHHHHHHhCCCCCC-CHHHHHHHHH
Q 009506 189 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG----------YTDEAFEIFEDMKSSENCQP-DSWTFSSMIT 257 (533)
Q Consensus 189 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g----------~~~~A~~~~~~m~~~~~~~p-~~~~~~~li~ 257 (533)
.|.+.+.+-.++--+|-+. +.-+...+-++++.+...- -..-|.+.++.+.+.++ +- ...-.-.-..
T Consensus 121 vR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~g-k~~s~aE~~Lyl~ 198 (932)
T KOG2053|consen 121 VREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKG-KIESEAEIILYLL 198 (932)
T ss_pred HHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCC-ccchHHHHHHHHH
Confidence 7777776655544444432 2224555555555554421 12345556666655432 11 1111222233
Q ss_pred HHHhcCChHHHHHHHH-HHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCC
Q 009506 258 ICSCRGKVSEAEAMFN-EMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 314 (533)
Q Consensus 258 ~~~~~g~~~~A~~~~~-~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 314 (533)
..-..|++++|+.++. ...+.-...+...-+.-++.+...+++.+..++-.++.+.|
T Consensus 199 iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 199 ILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 3445677888888773 33333333344444556667777788888888777777766
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00078 Score=67.15 Aligned_cols=220 Identities=17% Similarity=0.141 Sum_probs=129.5
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhH
Q 009506 223 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 302 (533)
Q Consensus 223 ~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 302 (533)
+.+.|++.+|.-.|+...+.. +-+...|.-|...-...++-..|+..+.+..+.. +-|....-.|.-.|...|.-..
T Consensus 295 lm~nG~L~~A~LafEAAVkqd--P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD--PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC--hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHH
Confidence 345566666666666655543 3455666666666666666666666666655532 1234555555566666666666
Q ss_pred HHHHHHHhhhCCCC--------CCHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCC--ChhHHHHHHHHhhhhhccHHHH
Q 009506 303 VVRALNRLPELGIT--------PDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNS--KLGYVVKLLLEEQDIEGDFKKE 371 (533)
Q Consensus 303 a~~~~~~m~~~g~~--------p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~~ 371 (533)
|+..+++......+ ++...-.. ..+..... ....++|-.+....+ ....+-..|+..|...|++ ++
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ef-dr 448 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEF-DR 448 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHH-HH
Confidence 66666655332100 00000000 01111111 233333333333333 1222235666666666766 88
Q ss_pred HHHHHhhhcc--CccchhhHHHHHHHHhcCCHHHHHHHHHHHHhccccCCccccCccceeecccccChhhHHHHHHHHHH
Q 009506 372 ATELFNSISK--DVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWIN 449 (533)
Q Consensus 372 a~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~g~~~~a~~~~~~ 449 (533)
|.+.|+..-. +.|...||-|...++...+.++|+.-|++.++. +|+ |..+.|++-|.++-.|...+|+..++.
T Consensus 449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~---yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 449 AVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPG---YVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCC---eeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 8888887542 336678999999999999999999999987764 454 345568888889999999999999888
Q ss_pred HHHH
Q 009506 450 DLSK 453 (533)
Q Consensus 450 ~l~~ 453 (533)
.|.-
T Consensus 524 AL~m 527 (579)
T KOG1125|consen 524 ALSM 527 (579)
T ss_pred HHHh
Confidence 8763
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0023 Score=58.62 Aligned_cols=284 Identities=15% Similarity=0.100 Sum_probs=160.9
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 009506 121 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 200 (533)
Q Consensus 121 ~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~ 200 (533)
.+++..+..++++.... -+..+.+...-...+.|++++|.+-|+...+-+---....||..+.-| +.|+.+.|++.
T Consensus 125 e~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~ 200 (459)
T KOG4340|consen 125 EGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKH 200 (459)
T ss_pred cccCcchHHHHHhccCC---CccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHH
Confidence 45555666666655432 133333334444568899999999999888744333456788776665 45888999999
Q ss_pred HHHHHHcCCCc-------------CH---------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHH
Q 009506 201 YREMKEKGMQL-------------SV---------------TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTF 252 (533)
Q Consensus 201 ~~~m~~~g~~~-------------~~---------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~ 252 (533)
..+++++|++- |+ ..+|.-...+.+.|+++.|.+-+-+|.-+..-..|.+|.
T Consensus 201 iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTL 280 (459)
T KOG4340|consen 201 ISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTL 280 (459)
T ss_pred HHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhh
Confidence 99998877631 21 123333344567889999999988886554335677877
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCC-CCHHHHHHHHHHHhc
Q 009506 253 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT-PDDRFCGCLLNVMTQ 331 (533)
Q Consensus 253 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~~~~~ll~~~~~ 331 (533)
..+.-.- ..+++.+..+-+.-+.+.. +-...||..++-.||++.-++.|-.++.+=...-.+ .+...|+ |+.++..
T Consensus 281 HN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt 357 (459)
T KOG4340|consen 281 HNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALIT 357 (459)
T ss_pred hHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHh
Confidence 6554322 2344444444445555543 234678888999999999999999888765433221 2334444 5565554
Q ss_pred CCh--HHHHHHHHHHHhcCCChhHHHHHHHHhhhhh-ccHHHHHHHHHhhhccC--ccchhhHHHHHHHHhcCCHHHHHH
Q 009506 332 TPK--EELGKLVECVEKSNSKLGYVVKLLLEEQDIE-GDFKKEATELFNSISKD--VKKAYCNCLIDLCVNLNLLENACK 406 (533)
Q Consensus 332 ~~~--~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~~a~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~ 406 (533)
+.- +++.+-++.+.+.-.+--. ..-+...... .+...+.+..++..... .-.++.-+-...|++..++..+.+
T Consensus 358 ~qT~pEea~KKL~~La~~l~~kLR--klAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~YLPVlMa~AkiyW~~~Dy~~vEk 435 (459)
T KOG4340|consen 358 CQTAPEEAFKKLDGLAGMLTEKLR--KLAIQVQEARHNRDDEAIRKAVNEYDETLEKYLPVLMAQAKIYWNLEDYPMVEK 435 (459)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHH
Confidence 443 7776655543321100000 0001100000 00001222222222210 012234455567888999999999
Q ss_pred HHHHHHh
Q 009506 407 LLELGLT 413 (533)
Q Consensus 407 l~~~m~~ 413 (533)
+|+.-.+
T Consensus 436 ~Fr~Sve 442 (459)
T KOG4340|consen 436 IFRKSVE 442 (459)
T ss_pred HHHHHHh
Confidence 9986543
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.004 Score=64.57 Aligned_cols=94 Identities=18% Similarity=0.240 Sum_probs=61.0
Q ss_pred CCHHHHHHHHH--HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH-CCC--------
Q 009506 106 IDPNAFSTLIK--LYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD-NGL-------- 174 (533)
Q Consensus 106 ~~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~g~-------- 174 (533)
-|..|-..+++ .|.-.|+.+.|.+-.+-++.. .+|..|.+.|.+..+++-|.-.+..|.. +|.
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~IkS~------~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q 797 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIKSD------SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ 797 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHhhh------HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh
Confidence 37777777776 467789999998888888763 3688888888888888887777766642 121
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 009506 175 SPNWNTYASLLRAYGRARYGEDTLSVYREMKE 206 (533)
Q Consensus 175 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 206 (533)
.++ .+=..+.-.....|.+++|+.+|.+-++
T Consensus 798 ~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR 828 (1416)
T KOG3617|consen 798 NGE-EDEAKVAVLAIELGMLEEALILYRQCKR 828 (1416)
T ss_pred CCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 121 2222222233455667777777666544
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0017 Score=64.81 Aligned_cols=216 Identities=11% Similarity=0.025 Sum_probs=92.7
Q ss_pred HhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHH
Q 009506 189 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 268 (533)
Q Consensus 189 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 268 (533)
.+.|++.+|.-.|+..+..... +...|--|.......++-..|+..+++..+.. +-|....-.|.-.|...|.-..|
T Consensus 296 m~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld--P~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD--PTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC--CccHHHHHHHHHHHhhhhhHHHH
Confidence 3445555555555555544333 44555555555555555555555555555432 23444455555555555555555
Q ss_pred HHHHHHHHHcCCC--------CCHHHHHHHHHHHHhcCChhHHHHHHHHh-hhCCCCCCHHHHHHHHHHHhcCCh-HHHH
Q 009506 269 EAMFNEMLEAGFE--------PNLFVLTSLIQCYGKAQRTDDVVRALNRL-PELGITPDDRFCGCLLNVMTQTPK-EELG 338 (533)
Q Consensus 269 ~~~~~~m~~~g~~--------p~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~g~~p~~~~~~~ll~~~~~~~~-~~a~ 338 (533)
.+.++.......+ ++...-.. ..+.....+....++|-++ .+.+..+|..+...|--.|.-.|. +.+.
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 5555544322100 00000000 1111112222333333333 222333444444444444444444 5555
Q ss_pred HHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhcc-Ccc-chhhHHHHHHHHhcCCHHHHHHHHHH
Q 009506 339 KLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK-DVK-KAYCNCLIDLCVNLNLLENACKLLEL 410 (533)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~~-~~~-~~~~~~li~~~~~~g~~~~A~~l~~~ 410 (533)
..|+.+...+|+....++-|+..++.... ..+|..-+++... .|. +.++-.|.-.|...|.+++|.+.|-.
T Consensus 451 Dcf~~AL~v~Pnd~~lWNRLGAtLAN~~~-s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 451 DCFEAALQVKPNDYLLWNRLGATLANGNR-SEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHHhcCCchHHHHHHhhHHhcCCcc-cHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 55555555555555555555444443222 2444444444321 221 22333344445555555555444433
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00046 Score=68.03 Aligned_cols=126 Identities=15% Similarity=0.176 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 009506 179 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 258 (533)
Q Consensus 179 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~ 258 (533)
.....|++.+...++++.|..+|+++.+.. |+ ....++..+...++-.+|.+++++..+.. +.|......-.+.
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~--p~d~~LL~~Qa~f 243 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN--PQDSELLNLQAEF 243 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 344566777777899999999999999884 44 34457788888888999999998888654 4577777777888
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 009506 259 CSCRGKVSEAEAMFNEMLEAGFEPNL-FVLTSLIQCYGKAQRTDDVVRALNRLPE 312 (533)
Q Consensus 259 ~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~ 312 (533)
|.+.++++.|.++.+++.+. .|+. .+|..|..+|.+.|+++.|+..++-+.-
T Consensus 244 Ll~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 244 LLSKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHhcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 99999999999999998875 3664 5899999999999999999999988753
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0012 Score=68.18 Aligned_cols=228 Identities=10% Similarity=0.078 Sum_probs=103.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHC-C--------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 009506 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI-G--------VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 177 (533)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g--------~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 177 (533)
+..+|..|.++|.+.++++-|.-.+-.|... | -.++ .+=....-.....|..++|+.+|.+-+.
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR------ 828 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR------ 828 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH------
Confidence 3445666666666666555555555544321 1 1111 1111122223345555666666555443
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 009506 178 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 257 (533)
Q Consensus 178 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~ 257 (533)
|..|=+.|-..|.+++|.++-+.=-+..+ ..||..-..-+-..++.+.|++.|++... +--..+..|.
T Consensus 829 ---~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~AleyyEK~~~-----hafev~rmL~- 896 (1416)
T KOG3617|consen 829 ---YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEYYEKAGV-----HAFEVFRMLK- 896 (1416)
T ss_pred ---HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHHHHhcCC-----hHHHHHHHHH-
Confidence 22333444455666666555443211111 12344444444445556666655554321 1111111110
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HH
Q 009506 258 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EE 336 (533)
Q Consensus 258 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~ 336 (533)
.++...++..+.+ .|...|....+.+-..|+.|.|+.+|...++ |-++++..+-.|+ ++
T Consensus 897 -----e~p~~~e~Yv~~~------~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~k 956 (1416)
T KOG3617|consen 897 -----EYPKQIEQYVRRK------RDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDK 956 (1416)
T ss_pred -----hChHHHHHHHHhc------cchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchH
Confidence 0111111122221 2334455555555566777777776666543 2334455555555 55
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhh
Q 009506 337 LGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI 379 (533)
Q Consensus 337 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~ 379 (533)
|.++.++- +. -..-..|.+.|...|+. .+|..+|.+.
T Consensus 957 Aa~iA~es---gd--~AAcYhlaR~YEn~g~v-~~Av~FfTrA 993 (1416)
T KOG3617|consen 957 AARIAEES---GD--KAACYHLARMYENDGDV-VKAVKFFTRA 993 (1416)
T ss_pred HHHHHHhc---cc--HHHHHHHHHHhhhhHHH-HHHHHHHHHH
Confidence 55554431 11 11124566777777765 6777776654
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00055 Score=67.50 Aligned_cols=124 Identities=15% Similarity=0.111 Sum_probs=85.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh
Q 009506 146 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 225 (533)
Q Consensus 146 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 225 (533)
-..|+..+...++++.|+.+|+++.+.. |+. ...+++.+...++-.+|.+++.+..+.... +....+.-...|.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHh
Confidence 3445555566677777888887777654 443 344667777777777777777777754332 56666666667778
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009506 226 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 276 (533)
Q Consensus 226 ~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 276 (533)
.++++.|+++.+++.... +-+-.+|..|..+|.+.|+++.|+..++.+.
T Consensus 247 k~~~~lAL~iAk~av~ls--P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELS--PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 888888888888877753 3345588888888888888888888877765
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.024 Score=53.18 Aligned_cols=298 Identities=12% Similarity=0.074 Sum_probs=199.6
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH---HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 009506 106 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL---DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 182 (533)
Q Consensus 106 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li---~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 182 (533)
-++.-.--+-+.+...|++.+|+.-|....+ -|...|.++. ..|...|+-..|+.=|.+.++. .||-..-.
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve----~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~AR 109 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVE----GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAAR 109 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHc----CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHH
Confidence 3455566678888889999999999998876 4555666554 4577788888888888888874 56643211
Q ss_pred -HHHHHHHhcCChHHHHHHHHHHHHcCCCc----CH----------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 009506 183 -SLLRAYGRARYGEDTLSVYREMKEKGMQL----SV----------TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 247 (533)
Q Consensus 183 -~ll~~~~~~g~~~~a~~~~~~m~~~g~~~----~~----------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p 247 (533)
---..+.+.|.++.|..=|+...+....- +. ......+..+.-.|+...|++....+.+.. +.
T Consensus 110 iQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~--~W 187 (504)
T KOG0624|consen 110 IQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ--PW 187 (504)
T ss_pred HHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC--cc
Confidence 11234678999999999999988764311 11 112233455667899999999999988754 56
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 009506 248 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 327 (533)
Q Consensus 248 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 327 (533)
|...|..-..+|...|++..|..=++...+.. .-+..++-.+-..+...|+.+.++...++..+. .||...+-....
T Consensus 188 da~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YK 264 (504)
T KOG0624|consen 188 DASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYK 264 (504)
T ss_pred hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHH
Confidence 88889999999999999999988777765432 346677777888889999999999999998764 477653322222
Q ss_pred HHhcC-------------Ch-HHHHHHHHHHHhcCCChhHHH----HHHHHhhhhhccHHHHHHHHHhhh-ccCc-cchh
Q 009506 328 VMTQT-------------PK-EELGKLVECVEKSNSKLGYVV----KLLLEEQDIEGDFKKEATELFNSI-SKDV-KKAY 387 (533)
Q Consensus 328 ~~~~~-------------~~-~~a~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~~a~~~~~~~-~~~~-~~~~ 387 (533)
-+-+. ++ .++..-.+.+.+.+|....+. ..+..++...|+. .+|++.-.+. ..+| |+.+
T Consensus 265 klkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~-~eAiqqC~evL~~d~~dv~~ 343 (504)
T KOG0624|consen 265 KLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQF-GEAIQQCKEVLDIDPDDVQV 343 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCH-HHHHHHHHHHHhcCchHHHH
Confidence 22211 11 222222333445566533221 4445566666766 5666554443 3334 4667
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 009506 388 CNCLIDLCVNLNLLENACKLLELGLTLE 415 (533)
Q Consensus 388 ~~~li~~~~~~g~~~~A~~l~~~m~~~g 415 (533)
+---.++|.-...++.|+.=|+...+..
T Consensus 344 l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 344 LCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 7777788888888888888888776543
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00018 Score=71.11 Aligned_cols=126 Identities=11% Similarity=0.048 Sum_probs=98.4
Q ss_pred hcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 009506 101 NEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI--GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 178 (533)
Q Consensus 101 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 178 (533)
..+...+......+++.+....+++.+..++-+.+.. ....-..|.+++|+.|.+.|..++++.+++.=...|+-||.
T Consensus 59 ~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~ 138 (429)
T PF10037_consen 59 ERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDN 138 (429)
T ss_pred hcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCCh
Confidence 3445567777777888887778888888888887754 22222345568899999999999999998888888999999
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc
Q 009506 179 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 226 (533)
Q Consensus 179 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 226 (533)
.++|.||+.+.+.|++..|.++..+|...+.-.+..|+...+.+|.+.
T Consensus 139 ~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 139 FSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999999888888776666777777777776665
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.021 Score=51.51 Aligned_cols=83 Identities=23% Similarity=0.270 Sum_probs=37.2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 009506 226 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 305 (533)
Q Consensus 226 ~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 305 (533)
.|++++|+++++.+.+.+ +-|.+++---+.+.-..|+--+|.+-+....+. +.-|...|.-+-..|...|++++|.-
T Consensus 99 ~~~~~~A~e~y~~lL~dd--pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~f 175 (289)
T KOG3060|consen 99 TGNYKEAIEYYESLLEDD--PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAF 175 (289)
T ss_pred hhchhhHHHHHHHHhccC--cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHH
Confidence 344444555554444433 334444443333444444444444444443332 23344445555555555555555555
Q ss_pred HHHHhh
Q 009506 306 ALNRLP 311 (533)
Q Consensus 306 ~~~~m~ 311 (533)
.++++.
T Consensus 176 ClEE~l 181 (289)
T KOG3060|consen 176 CLEELL 181 (289)
T ss_pred HHHHHH
Confidence 444444
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.83 E-value=1.8e-05 Score=47.17 Aligned_cols=29 Identities=34% Similarity=0.743 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 009506 110 AFSTLIKLYGTAGNFDGCLNVYEEMKAIG 138 (533)
Q Consensus 110 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 138 (533)
+||++|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555443
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.034 Score=55.97 Aligned_cols=56 Identities=13% Similarity=0.074 Sum_probs=31.1
Q ss_pred HHhcCChHHHHHHHHHHHHcC-------------CCcCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 009506 188 YGRARYGEDTLSVYREMKEKG-------------MQLSVT-LYNTLLAMCADVGYTDEAFEIFEDMKSSE 243 (533)
Q Consensus 188 ~~~~g~~~~a~~~~~~m~~~g-------------~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 243 (533)
++..|++.+|+++++...+.+ +.-... .--.|...+...|+.++|.+++....+..
T Consensus 185 ~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~ 254 (652)
T KOG2376|consen 185 LIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN 254 (652)
T ss_pred HHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc
Confidence 345677888887777662211 110111 11123345566788888888777766654
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.80 E-value=2.7e-05 Score=46.34 Aligned_cols=31 Identities=16% Similarity=0.155 Sum_probs=29.0
Q ss_pred hhhHHHHHHHHhcCCHHHHHHHHHHHHhccc
Q 009506 386 AYCNCLIDLCVNLNLLENACKLLELGLTLEV 416 (533)
Q Consensus 386 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 416 (533)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3799999999999999999999999998875
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.018 Score=51.88 Aligned_cols=187 Identities=14% Similarity=0.156 Sum_probs=137.2
Q ss_pred cCChHHHHHHHHHHHHC---C-CCCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCCh
Q 009506 121 AGNFDGCLNVYEEMKAI---G-VKPNMIT-YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL-LRAYGRARYG 194 (533)
Q Consensus 121 ~g~~~~A~~~~~~m~~~---g-~~pd~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l-l~~~~~~g~~ 194 (533)
..+.++..+++.++... | ..+|..+ |..++-+....|+.+.|...++++..+- |...-...| .-.+--.|++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhch
Confidence 45788889988888643 4 5566644 4556667778899999999999988753 433222111 1223346899
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 009506 195 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 274 (533)
Q Consensus 195 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 274 (533)
++|+++++.+.+.+. .|.++|--=+...-..|.--+|++-+....+.. ..|...|.-+...|...|++++|.-.+++
T Consensus 103 ~~A~e~y~~lL~ddp-t~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F--~~D~EAW~eLaeiY~~~~~f~kA~fClEE 179 (289)
T KOG3060|consen 103 KEAIEYYESLLEDDP-TDTVIRKRKLAILKAQGKNLEAIKELNEYLDKF--MNDQEAWHELAEIYLSEGDFEKAAFCLEE 179 (289)
T ss_pred hhHHHHHHHHhccCc-chhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 999999999998873 478888877777777888889988888877764 68999999999999999999999999999
Q ss_pred HHHcCCCCC-HHHHHHHHHHHHh---cCChhHHHHHHHHhhhCC
Q 009506 275 MLEAGFEPN-LFVLTSLIQCYGK---AQRTDDVVRALNRLPELG 314 (533)
Q Consensus 275 m~~~g~~p~-~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~g 314 (533)
+.-. .|. .-.+..+.+.+.. ..+...+.++|.+..+..
T Consensus 180 ~ll~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 180 LLLI--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 8764 354 3344455554433 345667788888877654
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00033 Score=69.34 Aligned_cols=124 Identities=14% Similarity=0.117 Sum_probs=76.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHH
Q 009506 173 GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK--GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 250 (533)
Q Consensus 173 g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~ 250 (533)
+.+.+......+++.+....+++.+..++-+.... ....-..|.+++|+.|.+.|..++++++++.=..-|+ =||..
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGi-F~D~~ 139 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGI-FPDNF 139 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhccc-CCChh
Confidence 34456666666666666666666666666666553 2222233445666777777777777777666666664 66777
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 009506 251 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 297 (533)
Q Consensus 251 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 297 (533)
++|.||+.+.+.|++..|.++..+|...+...+..|+..-+.+|.+-
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 77777777777777777777766666655555555555555544443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0048 Score=63.17 Aligned_cols=25 Identities=20% Similarity=0.109 Sum_probs=15.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc
Q 009506 390 CLIDLCVNLNLLENACKLLELGLTL 414 (533)
Q Consensus 390 ~li~~~~~~g~~~~A~~l~~~m~~~ 414 (533)
-+...+-..|++++|-+-+-+..+.
T Consensus 1000 k~a~~ledegk~edaskhyveaikl 1024 (1636)
T KOG3616|consen 1000 KLAMFLEDEGKFEDASKHYVEAIKL 1024 (1636)
T ss_pred HHhhhhhhccchhhhhHhhHHHhhc
Confidence 3444556677888877766655443
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.034 Score=59.34 Aligned_cols=211 Identities=16% Similarity=0.160 Sum_probs=96.5
Q ss_pred hhHHHHHhhcCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 009506 93 KSYDTRARNEKW--RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI--GVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 168 (533)
Q Consensus 93 ~~l~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~ 168 (533)
+++.+++...++ ..|+.--+..+.++...+-..+-+++++++.-. .+.-+...-|.||-...+. +..++.+..++
T Consensus 967 RqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~r 1045 (1666)
T KOG0985|consen 967 RQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINR 1045 (1666)
T ss_pred HHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHH
Confidence 445555555554 336666666777777777777777777776521 1111222233344333332 33344555555
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC
Q 009506 169 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD 248 (533)
Q Consensus 169 m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~ 248 (533)
+.... .|+. ...+...+-+++|..+|+...- +....+.||.- -+..+.|.++-++.. .
T Consensus 1046 LdnyD-a~~i------a~iai~~~LyEEAF~ifkkf~~-----n~~A~~VLie~---i~~ldRA~efAe~~n-------~ 1103 (1666)
T KOG0985|consen 1046 LDNYD-APDI------AEIAIENQLYEEAFAIFKKFDM-----NVSAIQVLIEN---IGSLDRAYEFAERCN-------E 1103 (1666)
T ss_pred hccCC-chhH------HHHHhhhhHHHHHHHHHHHhcc-----cHHHHHHHHHH---hhhHHHHHHHHHhhC-------C
Confidence 44332 1221 2223334445555555544311 22233333321 133334433333322 1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 009506 249 SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV 328 (533)
Q Consensus 249 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 328 (533)
...|+.+..+-.+.|.+.+|.+-|-+. -|+..|..+|+...+.|.+++-.+++...++..-.|... ..||-+
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~A 1175 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFA 1175 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHH
Confidence 234555555555555555555444321 344455555555555555555555555444444333333 234455
Q ss_pred HhcCCh
Q 009506 329 MTQTPK 334 (533)
Q Consensus 329 ~~~~~~ 334 (533)
|++.++
T Consensus 1176 yAkt~r 1181 (1666)
T KOG0985|consen 1176 YAKTNR 1181 (1666)
T ss_pred HHHhch
Confidence 555544
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.046 Score=55.68 Aligned_cols=275 Identities=12% Similarity=0.058 Sum_probs=151.8
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 009506 118 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 197 (533)
Q Consensus 118 ~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 197 (533)
+...|+-++|......-.+..+ .+.+.|+.+.-.+-...++++|++.|......+ +-|..++.-|--.-++.|+++..
T Consensus 51 L~~lg~~~ea~~~vr~glr~d~-~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~ 128 (700)
T KOG1156|consen 51 LNCLGKKEEAYELVRLGLRNDL-KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGY 128 (700)
T ss_pred hhcccchHHHHHHHHHHhccCc-ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhH
Confidence 3445677777776666555432 355677777666666777777777777777654 34556666555555666677666
Q ss_pred HHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH------HhcCChHHHHHH
Q 009506 198 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC------SCRGKVSEAEAM 271 (533)
Q Consensus 198 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~------~~~g~~~~A~~~ 271 (533)
...-.++.+.... ....|..+.-++--.|++..|.++++...+...-.|+...|.-..... .+.|.+++|.+.
T Consensus 129 ~~tr~~LLql~~~-~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~ 207 (700)
T KOG1156|consen 129 LETRNQLLQLRPS-QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEH 207 (700)
T ss_pred HHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 6666665554222 455666666777777778888887777766542245666655443332 345666666666
Q ss_pred HHHHHHcCCCCCHHH-HHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHH-HHHHHhcCCh-HHHH-HHHHHHHhc
Q 009506 272 FNEMLEAGFEPNLFV-LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC-LLNVMTQTPK-EELG-KLVECVEKS 347 (533)
Q Consensus 272 ~~~m~~~g~~p~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~-ll~~~~~~~~-~~a~-~~~~~~~~~ 347 (533)
+..-... + .|-.. -.+-...+.+.+++++|..+|..+...+ ||..-|.. +..++.+-.+ .++. .++....+.
T Consensus 208 L~~~e~~-i-~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~ 283 (700)
T KOG1156|consen 208 LLDNEKQ-I-VDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEK 283 (700)
T ss_pred HHhhhhH-H-HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc
Confidence 5543221 1 22222 2344556677788888888888877654 66654443 3344432222 3333 455554443
Q ss_pred CCChhHHHHHHHHhhhhhccHHHHHHHHHhhhccCccchhhHHHHHHHHhcCC
Q 009506 348 NSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNL 400 (533)
Q Consensus 348 ~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~ 400 (533)
-+...+....-+.... ..++.+..-.++...-..+-+.++..+...|-.-..
T Consensus 284 y~r~e~p~Rlplsvl~-~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k 335 (700)
T KOG1156|consen 284 YPRHECPRRLPLSVLN-GEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEK 335 (700)
T ss_pred CcccccchhccHHHhC-cchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhH
Confidence 3333333211111111 122323333344444444455677777777765443
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0057 Score=60.11 Aligned_cols=145 Identities=14% Similarity=0.111 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 009506 110 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN-WNTYASLLRAY 188 (533)
Q Consensus 110 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~ 188 (533)
-|-.-+ .+...|++++|+..++.+... .+-|+.-+......+.+.++..+|.+.++.+... .|+ ....-.+..+|
T Consensus 309 ~YG~A~-~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~al 384 (484)
T COG4783 309 QYGRAL-QTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQAL 384 (484)
T ss_pred HHHHHH-HHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHH
Confidence 344333 344689999999999998875 2335555566677899999999999999999986 466 56777888999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHH
Q 009506 189 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 268 (533)
Q Consensus 189 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 268 (533)
.+.|+..+|+.+++........ |...|..|..+|...|+..++..-.-+ +|...|+++.|
T Consensus 385 l~~g~~~eai~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~A~AE-------------------~~~~~G~~~~A 444 (484)
T COG4783 385 LKGGKPQEAIRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALLARAE-------------------GYALAGRLEQA 444 (484)
T ss_pred HhcCChHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHHHHHH-------------------HHHhCCCHHHH
Confidence 9999999999999999887655 899999999999999999988776543 45667889999
Q ss_pred HHHHHHHHHc
Q 009506 269 EAMFNEMLEA 278 (533)
Q Consensus 269 ~~~~~~m~~~ 278 (533)
...+....+.
T Consensus 445 ~~~l~~A~~~ 454 (484)
T COG4783 445 IIFLMRASQQ 454 (484)
T ss_pred HHHHHHHHHh
Confidence 9998887764
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.003 Score=53.66 Aligned_cols=85 Identities=13% Similarity=0.105 Sum_probs=36.6
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCcCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC
Q 009506 186 RAYGRARYGEDTLSVYREMKEKGMQLSV--TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 263 (533)
Q Consensus 186 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 263 (533)
..+...|++++|...|+...+....++. ...-.|...+...|++++|+..++..... ......+....+.|.+.|
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~---~~~~~~~~~~Gdi~~~~g 132 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDE---AFKALAAELLGDIYLAQG 132 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCc---chHHHHHHHHHHHHHHCC
Confidence 3444445555555555555444322111 12222334444455555555555442211 122333444444555555
Q ss_pred ChHHHHHHHH
Q 009506 264 KVSEAEAMFN 273 (533)
Q Consensus 264 ~~~~A~~~~~ 273 (533)
++++|...|+
T Consensus 133 ~~~~A~~~y~ 142 (145)
T PF09976_consen 133 DYDEARAAYQ 142 (145)
T ss_pred CHHHHHHHHH
Confidence 5555555544
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00049 Score=53.67 Aligned_cols=80 Identities=15% Similarity=0.294 Sum_probs=57.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------ChHHHHHHHHHHHHcCCCcCHHHH
Q 009506 146 YNNLLDTMGRAKRPWQVKTIYKEMTDNGL-SPNWNTYASLLRAYGRAR--------YGEDTLSVYREMKEKGMQLSVTLY 216 (533)
Q Consensus 146 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~g--------~~~~a~~~~~~m~~~g~~~~~~~~ 216 (533)
-...|..|...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. ++-..+.+|+.|...+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34556666667888888888888888888 788888888888877642 233456667777777777777777
Q ss_pred HHHHHHHHh
Q 009506 217 NTLLAMCAD 225 (533)
Q Consensus 217 ~~li~~~~~ 225 (533)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 777766544
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.006 Score=65.96 Aligned_cols=231 Identities=10% Similarity=0.028 Sum_probs=107.9
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHH
Q 009506 141 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN-TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 219 (533)
Q Consensus 141 pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 219 (533)
.+...|-.|+..+...+++++|.++.+...+. .|+.. .|-.+...|...++.+++..+ .+.+
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~------------- 91 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--NLID------------- 91 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--hhhh-------------
Confidence 35677889999999999999999999976664 35543 333333366666776666555 3322
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 009506 220 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 299 (533)
Q Consensus 220 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 299 (533)
......++.....+.+.|...+ -+...+-.+..+|-+.|+.++|..+|+++.+.. +-|..+.|-+...|... +
T Consensus 92 --~~~~~~~~~~ve~~~~~i~~~~---~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 92 --SFSQNLKWAIVEHICDKILLYG---ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-D 164 (906)
T ss_pred --hcccccchhHHHHHHHHHHhhh---hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-h
Confidence 2222222322222222333211 122344444444444555555555555544433 23344444444444444 4
Q ss_pred hhHHHHHHHHhhhCCCCCC--HHHHHHHHHHHhcCCh--HHHHHHHHHHHhc-CCCh-hHHHHHHHHhhhhhccHHHHHH
Q 009506 300 TDDVVRALNRLPELGITPD--DRFCGCLLNVMTQTPK--EELGKLVECVEKS-NSKL-GYVVKLLLEEQDIEGDFKKEAT 373 (533)
Q Consensus 300 ~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~--~~a~~~~~~~~~~-~~~~-~~~~~~l~~~~~~~g~~~~~a~ 373 (533)
+++|.+++.+....-+.-. .......-..|....+ +...++.+.+... +... ...+..+-..|....++ +++.
T Consensus 165 L~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~-~~~i 243 (906)
T PRK14720 165 KEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDW-DEVI 243 (906)
T ss_pred HHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhh-hHHH
Confidence 4444444444433211000 0000000011111111 2222222222222 1111 11123344555555555 8899
Q ss_pred HHHhhhcc--CccchhhHHHHHHHH
Q 009506 374 ELFNSISK--DVKKAYCNCLIDLCV 396 (533)
Q Consensus 374 ~~~~~~~~--~~~~~~~~~li~~~~ 396 (533)
.+|+.+-. ..+.....-++..|.
T Consensus 244 ~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 244 YILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHhcCCcchhhHHHHHHHHH
Confidence 99888754 234445566777665
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.001 Score=58.62 Aligned_cols=88 Identities=26% Similarity=0.388 Sum_probs=59.2
Q ss_pred CCHHHHHHHHHHHHh-----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----------------cCChhHHHH
Q 009506 247 PDSWTFSSMITICSC-----RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK----------------AQRTDDVVR 305 (533)
Q Consensus 247 p~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----------------~g~~~~a~~ 305 (533)
.|-.+|..+++.|.+ .|.++-....++.|.+.|+..|..+|+.||+.+=+ -.+.+-|++
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 344455555554443 24455555555555555555566666665555432 134567899
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHhcCCh
Q 009506 306 ALNRLPELGITPDDRFCGCLLNVMTQTPK 334 (533)
Q Consensus 306 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 334 (533)
++++|...|+.||..|+..|++.+++.+.
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 99999999999999999999999988776
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0038 Score=52.99 Aligned_cols=128 Identities=16% Similarity=0.111 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC--HHHHHH
Q 009506 179 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS--VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD--SWTFSS 254 (533)
Q Consensus 179 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~--~~~~~~ 254 (533)
..|..++..+. .++...+...++.+.+....-. ....-.+...+...|++++|...|+....... .++ ......
T Consensus 13 ~~y~~~~~~~~-~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~-d~~l~~~a~l~ 90 (145)
T PF09976_consen 13 ALYEQALQALQ-AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAP-DPELKPLARLR 90 (145)
T ss_pred HHHHHHHHHHH-CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC-CHHHHHHHHHH
Confidence 34555555553 7888888888888887643311 22233344778889999999999999887652 332 234456
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 009506 255 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 310 (533)
Q Consensus 255 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 310 (533)
|...+...|++++|...++...... .....+....+.|.+.|+.++|...|+..
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 7788889999999999997743332 34456667788899999999999988763
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.022 Score=56.67 Aligned_cols=129 Identities=13% Similarity=0.154 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 009506 179 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQL-SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 257 (533)
Q Consensus 179 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~ 257 (533)
.+|..+|+.-.|..-+..|..+|.+..+.+..+ ++.+++++|.-||. ++.+-|.++|+.=.+.. ..+..--...++
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf--~d~p~yv~~Yld 443 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKF--GDSPEYVLKYLD 443 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhc--CCChHHHHHHHH
Confidence 345555555555555556666666655554444 45555555554443 45555666665433321 122333334455
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHh
Q 009506 258 ICSCRGKVSEAEAMFNEMLEAGFEPN--LFVLTSLIQCYGKAQRTDDVVRALNRL 310 (533)
Q Consensus 258 ~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m 310 (533)
-+...++-..|..+|++....++.|+ ...|..+|+-=..-|++..+.++-+++
T Consensus 444 fL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~ 498 (656)
T KOG1914|consen 444 FLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRR 498 (656)
T ss_pred HHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 55555555555666665555544433 345555555555555555555555444
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.17 Score=52.86 Aligned_cols=249 Identities=14% Similarity=0.037 Sum_probs=158.0
Q ss_pred HHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009506 162 VKTIYKEMTDNG-LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 240 (533)
Q Consensus 162 a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 240 (533)
+++.+++..+.+ -.|++.-|- ---|+..++++.|.+...+..+.+-.-+...|..|.-.+...+++.+|+.+.+...
T Consensus 463 slqale~av~~d~~dp~~if~l--alq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al 540 (799)
T KOG4162|consen 463 SLQALEEAVQFDPTDPLVIFYL--ALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAAL 540 (799)
T ss_pred HHHHHHHHHhcCCCCchHHHHH--HHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 444444444432 233333333 33456678899999999999998666689999999999999999999999997765
Q ss_pred hCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH--------------------------------------------
Q 009506 241 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML-------------------------------------------- 276 (533)
Q Consensus 241 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-------------------------------------------- 276 (533)
.... .|......-+..-...++.+++......+.
T Consensus 541 ~E~~--~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~ 618 (799)
T KOG4162|consen 541 EEFG--DNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSS 618 (799)
T ss_pred HHhh--hhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHH
Confidence 4321 111111111111111222222221111110
Q ss_pred -------HcC---------CC--CC------HHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcC
Q 009506 277 -------EAG---------FE--PN------LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT 332 (533)
Q Consensus 277 -------~~g---------~~--p~------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 332 (533)
..| +. |+ ...|......+.+.+..++|...+.+..... .-....|...-..+-..
T Consensus 619 l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~ 697 (799)
T KOG4162|consen 619 LVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVK 697 (799)
T ss_pred HHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHH
Confidence 001 00 11 1234455566777888888887777765432 22333555554555566
Q ss_pred Ch-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHH--HHhhhc-cCc-cchhhHHHHHHHHhcCCHHHHHHH
Q 009506 333 PK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATE--LFNSIS-KDV-KKAYCNCLIDLCVNLNLLENACKL 407 (533)
Q Consensus 333 ~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~--~~~~~~-~~~-~~~~~~~li~~~~~~g~~~~A~~l 407 (533)
|. ++|...|......+|+.......++.++.+.|+- .-|.. ++..+. .+| +...|-.+...+.+.|+.++|.+.
T Consensus 698 ~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~-~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaec 776 (799)
T KOG4162|consen 698 GQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSP-RLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAEC 776 (799)
T ss_pred HhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCc-chHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHH
Confidence 67 9999999999999999999999999999888854 44444 555543 344 566999999999999999999999
Q ss_pred HHHHHhccc
Q 009506 408 LELGLTLEV 416 (533)
Q Consensus 408 ~~~m~~~g~ 416 (533)
|+...+..-
T Consensus 777 f~aa~qLe~ 785 (799)
T KOG4162|consen 777 FQAALQLEE 785 (799)
T ss_pred HHHHHhhcc
Confidence 998876653
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.098 Score=52.25 Aligned_cols=321 Identities=16% Similarity=0.147 Sum_probs=170.2
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009506 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN-MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 185 (533)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 185 (533)
|.+.|+.=..+|++.|++++|++=-.+-.+ +.|+ ..-|+-...++.-.|++++|+.-|.+-++.. +-|...++-|.
T Consensus 35 nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d-~~n~~L~~gl~ 111 (539)
T KOG0548|consen 35 NHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKD-PSNKQLKTGLA 111 (539)
T ss_pred ccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcC-CchHHHHHhHH
Confidence 778888888888888888888776655554 4566 3568888888888889999998888887754 45667788888
Q ss_pred HHHHhcCChHH------------------------H-HHHHHHHHHc-------------------------------CC
Q 009506 186 RAYGRARYGED------------------------T-LSVYREMKEK-------------------------------GM 209 (533)
Q Consensus 186 ~~~~~~g~~~~------------------------a-~~~~~~m~~~-------------------------------g~ 209 (533)
.++.-....++ + ..+++.+... |.
T Consensus 112 ~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~ 191 (539)
T KOG0548|consen 112 QAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGI 191 (539)
T ss_pred HhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCcccccccccc
Confidence 77721100000 0 0000000000 00
Q ss_pred -------Cc------------C----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 009506 210 -------QL------------S----------VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 260 (533)
Q Consensus 210 -------~~------------~----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~ 260 (533)
.| | ..-.-.+.++..+..+++.|++-+....+. .-+..-++..-.+|.
T Consensus 192 ~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el---~~~it~~~n~aA~~~ 268 (539)
T KOG0548|consen 192 EILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALEL---ATDITYLNNIAAVYL 268 (539)
T ss_pred ccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhH---hhhhHHHHHHHHHHH
Confidence 00 0 001122223333333334444444333321 222233344444555
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHH-------HHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCC
Q 009506 261 CRGKVSEAEAMFNEMLEAGFEPNLFVL-------TSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTP 333 (533)
Q Consensus 261 ~~g~~~~A~~~~~~m~~~g~~p~~~~~-------~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 333 (533)
..|.+.++...-....+.|.. ...-| ..+-.+|.+.++++.++..|.+....-..||.. .+..
T Consensus 269 e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk 338 (539)
T KOG0548|consen 269 ERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLL---------SKLK 338 (539)
T ss_pred hccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHH
Confidence 555555544444443333211 11111 122234455566666666666644332222211 1111
Q ss_pred h-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhc-cC-ccchhhHHHHHHHHhcCCHHHHHHHHHH
Q 009506 334 K-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSIS-KD-VKKAYCNCLIDLCVNLNLLENACKLLEL 410 (533)
Q Consensus 334 ~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~-~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~ 410 (533)
. +++.+..+...-.+|....-...-+..+.+.|++ ..|...+.++. .. .|...|..-.-+|.+.|.+.+|++=.+.
T Consensus 339 ~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy-~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~ 417 (539)
T KOG0548|consen 339 EAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDY-PEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKK 417 (539)
T ss_pred HHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCH-HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 2 3344433333344555544334446667777887 67777776653 33 3667888888899999998888876666
Q ss_pred HHhccccCCccccCccceeecccccCh-hhHHHHHHHHHHHHHHHHHcC
Q 009506 411 GLTLEVYTDIQSRSPTQWSLHLKSLSL-GAALTALHIWINDLSKALESG 458 (533)
Q Consensus 411 m~~~g~~~~~~~~~~~~~~~~l~~~~~-g~~~~a~~~~~~~l~~~~~~g 458 (533)
.++. .|+ .+.+|.. |.+..++..|-..++ ++..+
T Consensus 418 ~ieL--~p~-----------~~kgy~RKg~al~~mk~ydkAle-ay~ea 452 (539)
T KOG0548|consen 418 CIEL--DPN-----------FIKAYLRKGAALRAMKEYDKALE-AYQEA 452 (539)
T ss_pred HHhc--Cch-----------HHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 5554 222 2344444 777888777766654 34444
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0031 Score=60.06 Aligned_cols=129 Identities=12% Similarity=0.163 Sum_probs=60.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 009506 145 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA-YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 223 (533)
Q Consensus 145 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 223 (533)
+|..++..+-+.+..+.|..+|++.++.+ ..+..+|...... |...++.+.|.+||+...+. +..+...|...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45555555555555555555555555332 1122333333222 11234444455555555543 222455555555555
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 009506 224 ADVGYTDEAFEIFEDMKSSENCQPD---SWTFSSMITICSCRGKVSEAEAMFNEMLE 277 (533)
Q Consensus 224 ~~~g~~~~A~~~~~~m~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 277 (533)
.+.|+.+.|..+|++....- .++ ...|...++.=.+.|+++.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~l--~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSL--PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTS--SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhc--CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55666666666665555431 111 13555555555555555555555555544
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0025 Score=48.65 Aligned_cols=94 Identities=23% Similarity=0.273 Sum_probs=53.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 009506 111 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 190 (533)
Q Consensus 111 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 190 (533)
|..+...+...|++++|+.+|++..+.. +.+...+..+...+...+++++|.+.|+...... +.+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 4445556666667777777776665532 1233455556666666666666666666665543 2233455555556666
Q ss_pred cCChHHHHHHHHHHHH
Q 009506 191 ARYGEDTLSVYREMKE 206 (533)
Q Consensus 191 ~g~~~~a~~~~~~m~~ 206 (533)
.|+.+.|...+.+..+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 6666666666555443
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0052 Score=49.81 Aligned_cols=97 Identities=8% Similarity=0.016 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCC--CCCCHHHHHH
Q 009506 110 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN----MITYNNLLDTMGRAKRPWQVKTIYKEMTDNG--LSPNWNTYAS 183 (533)
Q Consensus 110 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~~~~~ 183 (533)
++-.+...+.+.|++++|.+.|+.+.... |+ ...+..+..++.+.|++++|.+.|+.+.... .......+..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 44555666666677777777776665432 22 2344556666666667777777766666432 1111344555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcC
Q 009506 184 LLRAYGRARYGEDTLSVYREMKEKG 208 (533)
Q Consensus 184 ll~~~~~~g~~~~a~~~~~~m~~~g 208 (533)
+..++.+.|+.++|.+.++++.+..
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHC
Confidence 5566666666666666666666653
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0022 Score=48.89 Aligned_cols=23 Identities=17% Similarity=0.244 Sum_probs=9.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHH
Q 009506 287 LTSLIQCYGKAQRTDDVVRALNR 309 (533)
Q Consensus 287 ~~~li~~~~~~g~~~~a~~~~~~ 309 (533)
+..+...+...|+.++|...+..
T Consensus 71 ~~~~~~~~~~~~~~~~a~~~~~~ 93 (100)
T cd00189 71 YYNLGLAYYKLGKYEEALEAYEK 93 (100)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHH
Confidence 33333333334444444443333
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.015 Score=55.60 Aligned_cols=175 Identities=13% Similarity=0.175 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-C----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 009506 108 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP-N----MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 182 (533)
Q Consensus 108 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 182 (533)
...|......|...|++++|.+.|.+..+..... + ...|......| +..++++|++.|++
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~-------------- 99 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAIECYEK-------------- 99 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHHHHHHH--------------
Confidence 3456777777777788888887777654310000 0 01122222222 22244444443333
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhC----CCCCCCHHHHHHHHH
Q 009506 183 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV-GYTDEAFEIFEDMKSS----ENCQPDSWTFSSMIT 257 (533)
Q Consensus 183 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~----~~~~p~~~~~~~li~ 257 (533)
.+..|.+.|++..|-+++.++ ...|-.. |++++|++.|++.... +...--..++..+..
T Consensus 100 -A~~~y~~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~ 163 (282)
T PF14938_consen 100 -AIEIYREAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAAD 163 (282)
T ss_dssp -HHHHHHHCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred -HHHHHHhcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHH
Confidence 344455555555554444433 2334444 6667766666554432 100001334456666
Q ss_pred HHHhcCChHHHHHHHHHHHHcCC-----CCCHH-HHHHHHHHHHhcCChhHHHHHHHHhhhC
Q 009506 258 ICSCRGKVSEAEAMFNEMLEAGF-----EPNLF-VLTSLIQCYGKAQRTDDVVRALNRLPEL 313 (533)
Q Consensus 258 ~~~~~g~~~~A~~~~~~m~~~g~-----~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~ 313 (533)
.+.+.|++++|.++|++....-. +.+.. .|...+-++...|+.-.|...|++....
T Consensus 164 l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 164 LYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 67777777777777777654321 11221 2223333555567777777777776543
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0031 Score=59.98 Aligned_cols=129 Identities=16% Similarity=0.160 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 009506 179 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM-CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 257 (533)
Q Consensus 179 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~ 257 (533)
.+|..+|+...+.+..+.|..+|.+.++.+. .+..+|-..... |...++.+.|.++|+...+.. ..+...|..-++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence 3566666666666667777777776664322 122223332222 222355555777776666553 456666666666
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 009506 258 ICSCRGKVSEAEAMFNEMLEAGFEPNL----FVLTSLIQCYGKAQRTDDVVRALNRLPE 312 (533)
Q Consensus 258 ~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~ 312 (533)
.+.+.++.+.|..+|++.... + +.. ..|...++-=.+.|+++.+.++.+++.+
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~-l-~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISS-L-PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCT-S-SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHh-c-CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666777777777777665543 2 222 3566666666666666666666666654
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0078 Score=48.75 Aligned_cols=97 Identities=11% Similarity=-0.020 Sum_probs=44.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--cCHHHHHHHHH
Q 009506 146 YNNLLDTMGRAKRPWQVKTIYKEMTDNGL--SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ--LSVTLYNTLLA 221 (533)
Q Consensus 146 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~--~~~~~~~~li~ 221 (533)
+..+...+.+.|++++|.+.|+.+.+..- ......+..+...+.+.|+++.|...|+.+...... .....+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 33444445555555555555555554210 001233444555555555555555555555443211 11233444444
Q ss_pred HHHhcCCHHHHHHHHHHHHhC
Q 009506 222 MCADVGYTDEAFEIFEDMKSS 242 (533)
Q Consensus 222 ~~~~~g~~~~A~~~~~~m~~~ 242 (533)
++.+.|+.++|.+.++++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 455555555555555555443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.013 Score=51.44 Aligned_cols=62 Identities=15% Similarity=0.051 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 009506 145 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN--WNTYASLLRAYGRARYGEDTLSVYREMKE 206 (533)
Q Consensus 145 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 206 (533)
.|..+...+...|++++|...|++..+..-.++ ...+..+...|.+.|++++|...+++..+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 100 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE 100 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444445555555555555555544321111 23444444444445555555554444444
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0075 Score=59.59 Aligned_cols=85 Identities=12% Similarity=0.035 Sum_probs=40.1
Q ss_pred hcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 009506 190 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 269 (533)
Q Consensus 190 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 269 (533)
..|++++|++.|++..+.... +...|..+..+|.+.|++++|+..+++..... +.+...|..+..+|...|++++|.
T Consensus 14 ~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~--P~~~~a~~~lg~~~~~lg~~~eA~ 90 (356)
T PLN03088 14 VDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD--PSLAKAYLRKGTACMKLEEYQTAK 90 (356)
T ss_pred HcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHhCCHHHHH
Confidence 344444555555444443322 34444444444555555555555555444432 223444444445555555555555
Q ss_pred HHHHHHHH
Q 009506 270 AMFNEMLE 277 (533)
Q Consensus 270 ~~~~~m~~ 277 (533)
..|++..+
T Consensus 91 ~~~~~al~ 98 (356)
T PLN03088 91 AALEKGAS 98 (356)
T ss_pred HHHHHHHH
Confidence 55555444
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.018 Score=50.41 Aligned_cols=93 Identities=11% Similarity=0.070 Sum_probs=72.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 009506 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN--MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 184 (533)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 184 (533)
....|..+...|.+.|++++|+..|++..+....++ ...|..+...+.+.|++++|+..+++..+.. +-+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 456688888899999999999999999986432222 4678888999999999999999999998753 2356667777
Q ss_pred HHHHHhcCChHHHHHH
Q 009506 185 LRAYGRARYGEDTLSV 200 (533)
Q Consensus 185 l~~~~~~g~~~~a~~~ 200 (533)
...|...|+...+..-
T Consensus 113 g~~~~~~g~~~~a~~~ 128 (172)
T PRK02603 113 AVIYHKRGEKAEEAGD 128 (172)
T ss_pred HHHHHHcCChHhHhhC
Confidence 7788887775554433
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0039 Score=56.75 Aligned_cols=90 Identities=19% Similarity=0.278 Sum_probs=61.1
Q ss_pred CCCCCHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh----------------hH
Q 009506 103 KWRIDPNAFSTLIKLYGTA-----GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP----------------WQ 161 (533)
Q Consensus 103 g~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~----------------~~ 161 (533)
+-+.|-.+|-+.+..+... +.++-....++.|.+.|+..|..+|+.||+.+-+-... +-
T Consensus 62 ~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C 141 (406)
T KOG3941|consen 62 PEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNC 141 (406)
T ss_pred cccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhH
Confidence 4466888888888888654 56777777788999999999999999999887654321 12
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 009506 162 VKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 192 (533)
Q Consensus 162 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 192 (533)
+++++++|...|+.||..+-..|++++++.+
T Consensus 142 ~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~ 172 (406)
T KOG3941|consen 142 AIKVLEQMEWHGVMPDKEIEDILVNAFGRWN 172 (406)
T ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHhcccc
Confidence 4555555555555555555555555555444
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0093 Score=52.04 Aligned_cols=79 Identities=14% Similarity=0.089 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 009506 180 TYASLLRAYGRARYGEDTLSVYREMKEKGMQL--SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 257 (533)
Q Consensus 180 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~ 257 (533)
.|..+...+...|++++|+..|++.......+ ...+|..+...|...|++++|++.++...... +....++..+..
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~--~~~~~~~~~la~ 114 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN--PFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHH
Confidence 34444444555555555555555554432211 12345555555555666666666665555432 223333444444
Q ss_pred HHH
Q 009506 258 ICS 260 (533)
Q Consensus 258 ~~~ 260 (533)
.|.
T Consensus 115 i~~ 117 (168)
T CHL00033 115 ICH 117 (168)
T ss_pred HHH
Confidence 444
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.01 Score=58.69 Aligned_cols=86 Identities=14% Similarity=-0.002 Sum_probs=44.5
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 009506 154 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 233 (533)
Q Consensus 154 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 233 (533)
...|++++|++.|++.++.. +-+...|..+..+|.+.|++++|+..+++..+.... +...|..+..+|...|++++|+
T Consensus 13 ~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~~eA~ 90 (356)
T PLN03088 13 FVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEYQTAK 90 (356)
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCHHHHH
Confidence 34455555555555555432 223444555555555555555555555555554322 3445555555555555555555
Q ss_pred HHHHHHHh
Q 009506 234 EIFEDMKS 241 (533)
Q Consensus 234 ~~~~~m~~ 241 (533)
..|++..+
T Consensus 91 ~~~~~al~ 98 (356)
T PLN03088 91 AALEKGAS 98 (356)
T ss_pred HHHHHHHH
Confidence 55555554
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0015 Score=49.51 Aligned_cols=19 Identities=21% Similarity=0.254 Sum_probs=7.6
Q ss_pred HHHHHHhcCChHHHHHHHH
Q 009506 255 MITICSCRGKVSEAEAMFN 273 (533)
Q Consensus 255 li~~~~~~g~~~~A~~~~~ 273 (533)
+..+|.+.|++++|..+++
T Consensus 31 la~~~~~~~~y~~A~~~~~ 49 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELLQ 49 (84)
T ss_dssp HHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHH
Confidence 3333344444444444443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0013 Score=49.89 Aligned_cols=81 Identities=15% Similarity=0.185 Sum_probs=38.3
Q ss_pred cCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 009506 121 AGNFDGCLNVYEEMKAIGVK-PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 199 (533)
Q Consensus 121 ~g~~~~A~~~~~~m~~~g~~-pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 199 (533)
.|+++.|+.+|+++.+.... ++...+-.+..++.+.|++++|..+++. .+.+ ..+....-.+..+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 35566666666666543211 1233333455566666666666666655 2111 1122333344555555666666665
Q ss_pred HHHH
Q 009506 200 VYRE 203 (533)
Q Consensus 200 ~~~~ 203 (533)
+|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5543
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.048 Score=45.97 Aligned_cols=84 Identities=8% Similarity=-0.019 Sum_probs=36.7
Q ss_pred hcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 009506 190 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 269 (533)
Q Consensus 190 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 269 (533)
..|++++|..+|+-+....+. +..-|-.|.-++-..|++++|++.|....... +.|...+-.+..++...|+.+.|.
T Consensus 47 ~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~--~ddp~~~~~ag~c~L~lG~~~~A~ 123 (157)
T PRK15363 47 EVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK--IDAPQAPWAAAECYLACDNVCYAI 123 (157)
T ss_pred HCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCchHHHHHHHHHHHcCCHHHHH
Confidence 344444444444444443322 33333344444444444444444444444433 233444444444444444444444
Q ss_pred HHHHHHH
Q 009506 270 AMFNEML 276 (533)
Q Consensus 270 ~~~~~m~ 276 (533)
+.|+...
T Consensus 124 ~aF~~Ai 130 (157)
T PRK15363 124 KALKAVV 130 (157)
T ss_pred HHHHHHH
Confidence 4444433
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.016 Score=48.77 Aligned_cols=96 Identities=10% Similarity=0.043 Sum_probs=68.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 009506 215 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 294 (533)
Q Consensus 215 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 294 (533)
..-.+-.-+...|++++|.++|+.+..-. +-+..-|-.|.-+|-..|++++|...|....... +-|...+-.+-.++
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~D--p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~ 113 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYD--AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHH
Confidence 34444555667788888888888777644 3456667777777778888888888888776654 24566777777788
Q ss_pred HhcCChhHHHHHHHHhhhC
Q 009506 295 GKAQRTDDVVRALNRLPEL 313 (533)
Q Consensus 295 ~~~g~~~~a~~~~~~m~~~ 313 (533)
...|+.+.|.+.|+..+..
T Consensus 114 L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 8888888888888876654
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.23 Score=46.13 Aligned_cols=57 Identities=14% Similarity=0.133 Sum_probs=36.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 009506 254 SMITICSCRGKVSEAEAMFNEMLEA--GFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 310 (533)
Q Consensus 254 ~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 310 (533)
.+.+-|.+.|.+..|..-|+.+.+. +.+........++.+|...|..++|..+...+
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 4455577777777777777777653 22333455566677777777777777665544
|
|
| >smart00463 SMR Small MutS-related domain | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0034 Score=46.97 Aligned_cols=76 Identities=32% Similarity=0.543 Sum_probs=60.1
Q ss_pred eeecccccChhhHHHHHHHHHHHHHHHHHcCCCCCCceEEEeeecccccc-chhHHHHHHHHhhhcCCCCCCCCCCcceE
Q 009506 428 WSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYS-DKGLASVFESHLKELNAPFHDSPDKVGWF 506 (533)
Q Consensus 428 ~~~~l~~~~~g~~~~a~~~~~~~l~~~~~~g~~~p~~~~i~~~~~~~~~~-~~~l~~~~~~~L~~~~~~f~~~~~~~g~~ 506 (533)
|.+++++++.+.|..++..|++...+ .+ .+..+.|++|.|.|+.. ...+...+.+.+.....+|.+. .|.|++
T Consensus 2 ~~lDLHG~~~~eA~~~l~~~l~~~~~---~~--~~~~~~II~G~G~~s~~g~~~i~~~l~~~l~~~~~~~~~~-~~~G~~ 75 (80)
T smart00463 2 WSLDLHGLTVEEALTALDKFLNNARL---KG--LEQKLVIITGKGKHSLGGKSGVKPALKEHLRVESFRFAEE-GNSGVL 75 (80)
T ss_pred CeEEcCCCCHHHHHHHHHHHHHHHHH---cC--CCceEEEEEcccCCCccchhhHHHHHHhchhhcccccCCC-CCCeEE
Confidence 67899999999999999988776653 23 21468999999999862 3567888899999888888764 899998
Q ss_pred EEe
Q 009506 507 LTT 509 (533)
Q Consensus 507 ~~~ 509 (533)
+..
T Consensus 76 ~v~ 78 (80)
T smart00463 76 VVK 78 (80)
T ss_pred EEE
Confidence 864
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.028 Score=49.02 Aligned_cols=64 Identities=11% Similarity=0.065 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 009506 108 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP--NMITYNNLLDTMGRAKRPWQVKTIYKEMTD 171 (533)
Q Consensus 108 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--d~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 171 (533)
...|..+...+...|++++|+..|++.......+ ...+|..+-..+...|++++|++.+++..+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4445555555555556666666555554321111 122445555555555555555555555544
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.094 Score=54.35 Aligned_cols=146 Identities=10% Similarity=-0.005 Sum_probs=90.0
Q ss_pred CCCCCHHHHHHHHHHHHhcC-----ChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc--------CCHHHHHHHHHHH
Q 009506 173 GLSPNWNTYASLLRAYGRAR-----YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV--------GYTDEAFEIFEDM 239 (533)
Q Consensus 173 g~~p~~~~~~~ll~~~~~~g-----~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~--------g~~~~A~~~~~~m 239 (533)
+.+.|...|...+++..... ..+.|..+|++..+.... ....|..+..+|... .++..+.+..++.
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 34567788888887755432 356788888888876433 334444433333221 1223344444443
Q ss_pred HhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCH
Q 009506 240 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 319 (533)
Q Consensus 240 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 319 (533)
........+...|..+.-.+...|++++|...+++..+.+ |+...|..+...|...|+.++|.+.|++..+.+ |..
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~--P~~ 486 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR--PGE 486 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCC
Confidence 3321113455677777666667788888888888877754 677788888888888888888888888876543 444
Q ss_pred HHHH
Q 009506 320 RFCG 323 (533)
Q Consensus 320 ~~~~ 323 (533)
.+|.
T Consensus 487 pt~~ 490 (517)
T PRK10153 487 NTLY 490 (517)
T ss_pred chHH
Confidence 4433
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.15 Score=54.66 Aligned_cols=162 Identities=13% Similarity=0.095 Sum_probs=80.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHH--HHHHHHH
Q 009506 180 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW--TFSSMIT 257 (533)
Q Consensus 180 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~--~~~~li~ 257 (533)
.|..|-..|+...+...|.+.|+...+.+-. |...+..+.+.|++..++++|..+.-...+.. +.-.. .|.-..-
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l~~~qka--~a~~~k~nW~~rG~ 570 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICLRAAQKA--PAFACKENWVQRGP 570 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHHHHhhhc--hHHHHHhhhhhccc
Confidence 4555555555555555566666555544322 44455555666666666666666632222211 11111 1222333
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHH--HHhcCCh-
Q 009506 258 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN--VMTQTPK- 334 (533)
Q Consensus 258 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~--~~~~~~~- 334 (533)
.|.+.++...|..-|+...... +.|...|..+.++|...|++..|.++|.+.... .|+.. |...-. ..+..|.
T Consensus 571 yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s~-y~~fk~A~~ecd~GkY 646 (1238)
T KOG1127|consen 571 YYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLSK-YGRFKEAVMECDNGKY 646 (1238)
T ss_pred cccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHhH-HHHHHHHHHHHHhhhH
Confidence 3455556666666665544432 234566666777777777777777777666543 34332 111111 1223344
Q ss_pred HHHHHHHHHHHhcC
Q 009506 335 EELGKLVECVEKSN 348 (533)
Q Consensus 335 ~~a~~~~~~~~~~~ 348 (533)
.++...++.+....
T Consensus 647 keald~l~~ii~~~ 660 (1238)
T KOG1127|consen 647 KEALDALGLIIYAF 660 (1238)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555554433
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.17 Score=46.08 Aligned_cols=131 Identities=9% Similarity=0.034 Sum_probs=68.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHH-----
Q 009506 146 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL----- 220 (533)
Q Consensus 146 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li----- 220 (533)
.+.++..+.-.|.+.-...++++.++..-+.++.....|.+.-.+.|+.+.|...|+...+..-..|..+.+.++
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 344555555555666666666666665545555666666666666666666666666555433333333333333
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 009506 221 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA 278 (533)
Q Consensus 221 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 278 (533)
..|.-.+++..|...|.++.... ..|.+.-|.-.-+..-.|+..+|.+.+..|.+.
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D--~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMD--PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hheecccchHHHHHHHhhccccC--CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 22333455555555555555443 233443333333333345555666666665553
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.32 Score=48.75 Aligned_cols=187 Identities=13% Similarity=0.129 Sum_probs=103.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH-------
Q 009506 111 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS------- 183 (533)
Q Consensus 111 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~------- 183 (533)
+..+.++..+..++..|++-++...+.. -+..-++..-.+|...|.+.+....-+...+.|- -...-|+.
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr-e~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR-ELRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH-HHHHHHHHHHHHHHH
Confidence 5667788888889999999998887743 3454556666678888888777666666655542 12222332
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCH-HHHHHHHHHHHhc
Q 009506 184 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS-WTFSSMITICSCR 262 (533)
Q Consensus 184 ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~ 262 (533)
+-.+|.+.++++.+...|.+.......||... +....+++.+..+...-. .|+. .-.-.-...+.+.
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a~~---~pe~A~e~r~kGne~Fk~ 371 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKAYI---NPEKAEEEREKGNEAFKK 371 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHHhh---ChhHHHHHHHHHHHHHhc
Confidence 33466667788888888887665433333221 122223333333222221 2221 1111123445556
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC
Q 009506 263 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 313 (533)
Q Consensus 263 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 313 (533)
|++..|.+.|.+++... +-|...|..-.-+|.+.|.+..|+.-.+...+.
T Consensus 372 gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL 421 (539)
T KOG0548|consen 372 GDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL 421 (539)
T ss_pred cCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 66666666666655543 334455555555666666666555554444443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.1 Score=49.87 Aligned_cols=147 Identities=16% Similarity=0.235 Sum_probs=79.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHH----cCCCCC--HHHHH
Q 009506 216 YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR-GKVSEAEAMFNEMLE----AGFEPN--LFVLT 288 (533)
Q Consensus 216 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~----~g~~p~--~~~~~ 288 (533)
|...+..|...|++..|-+++..+ ...|-.. |++++|.+.|.+..+ .| .+. ...+.
T Consensus 97 ~~~A~~~y~~~G~~~~aA~~~~~l----------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~ 159 (282)
T PF14938_consen 97 YEKAIEIYREAGRFSQAAKCLKEL----------------AEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLL 159 (282)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH----------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHH
Confidence 333445566666666666665554 3456666 788888888887654 22 111 34566
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhhCCCC-----CCHH--HHHHHHHHHhcCCh-HHHHHHHHHHHhcCCCh-----hHHH
Q 009506 289 SLIQCYGKAQRTDDVVRALNRLPELGIT-----PDDR--FCGCLLNVMTQTPK-EELGKLVECVEKSNSKL-----GYVV 355 (533)
Q Consensus 289 ~li~~~~~~g~~~~a~~~~~~m~~~g~~-----p~~~--~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~-----~~~~ 355 (533)
.+...+.+.|++++|.++|+++...-.. .+.. .+..+| .+...|+ ..|.+.++......|.. ..++
T Consensus 160 ~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l-~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~ 238 (282)
T PF14938_consen 160 KAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAIL-CHLAMGDYVAARKALERYCSQDPSFASSREYKFL 238 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHH-HHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHH
Confidence 7778899999999999999998664322 1121 233333 3334456 77777777766554432 2233
Q ss_pred HHHHHhhhhh-ccHHHHHHHHHhhhc
Q 009506 356 KLLLEEQDIE-GDFKKEATELFNSIS 380 (533)
Q Consensus 356 ~~l~~~~~~~-g~~~~~a~~~~~~~~ 380 (533)
.-|+.++... .+..+++..-|+++.
T Consensus 239 ~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 239 EDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 4444444332 112244444444444
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.15 Score=52.78 Aligned_cols=63 Identities=14% Similarity=0.199 Sum_probs=37.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 009506 212 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 277 (533)
Q Consensus 212 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 277 (533)
+...|.++.-.+...|++++|...|++.... .|+...|..+...|...|+.++|.+.|++...
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L---~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDL---EMSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3445555544444556666666666666654 34566666666666666666666666666544
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0059 Score=43.94 Aligned_cols=20 Identities=20% Similarity=0.338 Sum_probs=7.0
Q ss_pred HHHHHHhcCChHHHHHHHHH
Q 009506 255 MITICSCRGKVSEAEAMFNE 274 (533)
Q Consensus 255 li~~~~~~g~~~~A~~~~~~ 274 (533)
+..+|.+.|++++|.++++.
T Consensus 31 la~~~~~~g~~~~A~~~l~~ 50 (68)
T PF14559_consen 31 LAQCYLKQGQYDEAEELLER 50 (68)
T ss_dssp HHHHHHHTT-HHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHH
Confidence 33333333333333333333
|
... |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.11 Score=42.05 Aligned_cols=52 Identities=15% Similarity=0.173 Sum_probs=20.5
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009506 154 GRAKRPWQVKTIYKEMTDNGLSPN--WNTYASLLRAYGRARYGEDTLSVYREMK 205 (533)
Q Consensus 154 ~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 205 (533)
-..|+.++|+.+|++....|.... ...+-.+-..|...|++++|..+|++..
T Consensus 12 d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~ 65 (120)
T PF12688_consen 12 DSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEAL 65 (120)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334444444444444444443222 1222233333444444444444444433
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0083 Score=43.12 Aligned_cols=52 Identities=13% Similarity=0.135 Sum_probs=30.1
Q ss_pred hcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 009506 190 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 242 (533)
Q Consensus 190 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 242 (533)
+.|++++|+++|+++.+.... +...+..+..+|.+.|++++|.++++.+...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 455666666666666555433 5555555666666666666666666665554
|
... |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.095 Score=56.13 Aligned_cols=161 Identities=12% Similarity=0.067 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH--HHHH
Q 009506 109 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA--SLLR 186 (533)
Q Consensus 109 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~--~ll~ 186 (533)
..|+.|...|...-+...|.+.|+...+.. .-|...+..+...|++..+++.|..+.-..-+.. +.-...+| -+--
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka-~a~~~k~nW~~rG~ 570 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKA-PAFACKENWVQRGP 570 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhc-hHHHHHhhhhhccc
Confidence 345666666655556666666666665432 1244555566666666666666666522211110 00111111 1222
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHH-HHHHHHHHHhcCCh
Q 009506 187 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWT-FSSMITICSCRGKV 265 (533)
Q Consensus 187 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~-~~~li~~~~~~g~~ 265 (533)
.|.+.++..++..-|+...+..+. |...|..+..+|.+.|++..|.++|.+.... .|+... ---...+-+..|.+
T Consensus 571 yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L---rP~s~y~~fk~A~~ecd~GkY 646 (1238)
T KOG1127|consen 571 YYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL---RPLSKYGRFKEAVMECDNGKY 646 (1238)
T ss_pred cccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc---CcHhHHHHHHHHHHHHHhhhH
Confidence 344555566666666655555443 5666666666666666666666666655542 333211 11112233455666
Q ss_pred HHHHHHHHHH
Q 009506 266 SEAEAMFNEM 275 (533)
Q Consensus 266 ~~A~~~~~~m 275 (533)
.+|...+...
T Consensus 647 keald~l~~i 656 (1238)
T KOG1127|consen 647 KEALDALGLI 656 (1238)
T ss_pred HHHHHHHHHH
Confidence 6666655554
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.62 Score=44.17 Aligned_cols=266 Identities=11% Similarity=0.070 Sum_probs=174.4
Q ss_pred CCCHHHHHHHH---HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCChhHHHHHHHHHHHCCCCCCH--
Q 009506 105 RIDPNAFSTLI---KLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN-NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW-- 178 (533)
Q Consensus 105 ~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~-~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-- 178 (533)
.-|+..|-++. ..|...|+-.-|+.=|++..+ ++||-..-. .--..+.+.|.+++|..=|+..++.. |+.
T Consensus 66 e~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~--~s~~~ 141 (504)
T KOG0624|consen 66 EGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHE--PSNGL 141 (504)
T ss_pred cCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcC--CCcch
Confidence 44566665554 357778888888888888877 467753321 11235678999999999999998754 321
Q ss_pred --HHH------------HHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 009506 179 --NTY------------ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 244 (533)
Q Consensus 179 --~~~------------~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 244 (533)
..+ ...+..+.-.|+...|+.....+.+..+- |...|..-..+|...|++..|+.=++...+..
T Consensus 142 ~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~W-da~l~~~Rakc~i~~~e~k~AI~Dlk~askLs- 219 (504)
T KOG0624|consen 142 VLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPW-DASLRQARAKCYIAEGEPKKAIHDLKQASKLS- 219 (504)
T ss_pred hHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcc-hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-
Confidence 111 22345556678999999999988887544 77888888899999999999988887776654
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH----HHHH---------HHHHHhcCChhHHHHHHHHhh
Q 009506 245 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV----LTSL---------IQCYGKAQRTDDVVRALNRLP 311 (533)
Q Consensus 245 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~----~~~l---------i~~~~~~g~~~~a~~~~~~m~ 311 (533)
..++.++--+-..+-..|+.+.++...++..+. .||... |-.| +......++|-++++-.+...
T Consensus 220 -~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vl 296 (504)
T KOG0624|consen 220 -QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVL 296 (504)
T ss_pred -ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 466777777788888889999988888887763 355322 2111 112345677777888777776
Q ss_pred hCCCCCCHHHH---HHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhc
Q 009506 312 ELGITPDDRFC---GCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSIS 380 (533)
Q Consensus 312 ~~g~~p~~~~~---~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~ 380 (533)
+.........+ ..+-.++...+. .+|++.-.++....|+...++.--..+|.....+ +.|..-|+...
T Consensus 297 k~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~Y-D~AI~dye~A~ 368 (504)
T KOG0624|consen 297 KNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMY-DDAIHDYEKAL 368 (504)
T ss_pred hcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHH-HHHHHHHHHHH
Confidence 65433223333 333333344455 7777777777777777665554444444444433 66666665543
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.16 Score=41.08 Aligned_cols=105 Identities=15% Similarity=0.109 Sum_probs=76.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHH
Q 009506 114 LIKLYGTAGNFDGCLNVYEEMKAIGVKPN--MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN----WNTYASLLRA 187 (533)
Q Consensus 114 li~~~~~~g~~~~A~~~~~~m~~~g~~pd--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~~~~~ll~~ 187 (533)
+..++-..|+.++|+.+|++....|...+ ...+-.+-+.+...|++++|+.+|++..... |+ ......+.-+
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHH
Confidence 45667788999999999999999887654 3355567788899999999999999998752 43 2223333446
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 009506 188 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 224 (533)
Q Consensus 188 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 224 (533)
+...|+.++|...+-..... +...|.--|..|+
T Consensus 85 L~~~gr~~eAl~~~l~~la~----~~~~y~ra~~~ya 117 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEALAE----TLPRYRRAIRFYA 117 (120)
T ss_pred HHHCCCHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 67789999998888765543 4446666665554
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.43 Score=41.17 Aligned_cols=99 Identities=13% Similarity=0.076 Sum_probs=49.4
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCCCHHHH
Q 009506 211 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA---GFEPNLFVL 287 (533)
Q Consensus 211 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~ 287 (533)
|++..--.|..+..+.|++.+|...|++... |.+.-|....-.+.++....+++..|...++.+.+. +-.|| +.
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~ 163 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH 163 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence 4444444455555555555555555555442 323445555555555555555555555555554442 11222 22
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhh
Q 009506 288 TSLIQCYGKAQRTDDVVRALNRLPE 312 (533)
Q Consensus 288 ~~li~~~~~~g~~~~a~~~~~~m~~ 312 (533)
..+...|...|+..+|..-|+....
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHH
Confidence 3344455555555555555555544
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.64 Score=43.16 Aligned_cols=173 Identities=11% Similarity=-0.019 Sum_probs=93.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHH---HHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 009506 149 LLDTMGRAKRPWQVKTIYKEMTDNGLSPN-WNTY---ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 224 (533)
Q Consensus 149 li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~---~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 224 (533)
....+...|++++|++.|+++...- |+ .... -.+..+|.+.+++++|...+++..+....-...-|...+.+.+
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHh
Confidence 3444556777888888887777642 22 2222 3455667777888888888877777643322333333333322
Q ss_pred h--cC---------------C---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 009506 225 D--VG---------------Y---TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 284 (533)
Q Consensus 225 ~--~g---------------~---~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 284 (533)
. .+ | ..+|++.|+++.+ -|-...-..+|...+..+... . .
T Consensus 116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~----------------~yP~S~ya~~A~~rl~~l~~~---l-a 175 (243)
T PRK10866 116 NMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR----------------GYPNSQYTTDATKRLVFLKDR---L-A 175 (243)
T ss_pred hhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH----------------HCcCChhHHHHHHHHHHHHHH---H-H
Confidence 1 00 1 1233344444333 333333345555544444321 0 1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhhC--CCCCCHHHHHHHHHHHhcCCh-HHHHHHHHH
Q 009506 285 FVLTSLIQCYGKAQRTDDVVRALNRLPEL--GITPDDRFCGCLLNVMTQTPK-EELGKLVEC 343 (533)
Q Consensus 285 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~ 343 (533)
..-..+..-|.+.|.+..|..-|+.+.+. +..........+..+|...|. +++......
T Consensus 176 ~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 176 KYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 11124556678888888888888888764 333334456667777777776 665554443
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.015 Score=41.29 Aligned_cols=54 Identities=24% Similarity=0.263 Sum_probs=26.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 009506 222 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 277 (533)
Q Consensus 222 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 277 (533)
.+.+.|++++|++.|+++.+.. +-+...+..+..++...|++++|...|+++.+
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444555555555555555443 22444444555555555555555555555443
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.50 E-value=1.6 Score=46.81 Aligned_cols=224 Identities=13% Similarity=0.087 Sum_probs=150.2
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 009506 119 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM--GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGED 196 (533)
Q Consensus 119 ~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~--~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 196 (533)
...+++.+|+...+++.+. -||. .|...+.++ .+.|+.++|..+++.....+.. |..|...+-..|.+.++.++
T Consensus 20 ld~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence 3567899999999988764 3565 455666665 5889999999999888776644 88999999999999999999
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC----------ChH
Q 009506 197 TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG----------KVS 266 (533)
Q Consensus 197 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g----------~~~ 266 (533)
|..+|+..... .|+......+..+|.+.+++.+-.++-=++-+.. +-+...|=++++.+.+.- -..
T Consensus 96 ~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~--pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~ 171 (932)
T KOG2053|consen 96 AVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNF--PKRAYYFWSVISLILQSIFSENELLDPILLA 171 (932)
T ss_pred HHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CcccchHHHHHHHHHHhccCCcccccchhHH
Confidence 99999998876 4567778888889999988876555444444321 334555555555554422 145
Q ss_pred HHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCChhHHHHHH-HHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHH
Q 009506 267 EAEAMFNEMLEAG-FEPNLFVLTSLIQCYGKAQRTDDVVRAL-NRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVEC 343 (533)
Q Consensus 267 ~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~a~~~~-~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~ 343 (533)
.|.+.++.+.+.+ ..-+..=...-...+...|++++|+.++ ....+.-..-+...-+.-+..+...+. .+..++...
T Consensus 172 LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~ 251 (932)
T KOG2053|consen 172 LAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSR 251 (932)
T ss_pred HHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 7888888887754 2222222222233445678899999988 444444333444444455555555555 666666666
Q ss_pred HHhcCCC
Q 009506 344 VEKSNSK 350 (533)
Q Consensus 344 ~~~~~~~ 350 (533)
+...+++
T Consensus 252 Ll~k~~D 258 (932)
T KOG2053|consen 252 LLEKGND 258 (932)
T ss_pred HHHhCCc
Confidence 6655555
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.072 Score=43.61 Aligned_cols=26 Identities=15% Similarity=0.156 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHH
Q 009506 178 WNTYASLLRAYGRARYGEDTLSVYRE 203 (533)
Q Consensus 178 ~~~~~~ll~~~~~~g~~~~a~~~~~~ 203 (533)
..++..+|.++++.|+++....+++.
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~ 27 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKS 27 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 44555666666666666655555543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.029 Score=51.93 Aligned_cols=99 Identities=14% Similarity=0.161 Sum_probs=63.2
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChh
Q 009506 223 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN-LFVLTSLIQCYGKAQRTD 301 (533)
Q Consensus 223 ~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~ 301 (533)
..+.+++.+|+..|.+..+.. +-|.+.|..-..+|++.|.++.|++-.+..+.. .|+ ..+|..|-.+|...|+++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~--P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD--PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC--CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcHH
Confidence 345667777777777666643 346666666677777777777777666665542 233 456777777777777777
Q ss_pred HHHHHHHHhhhCCCCCCHHHHHHHHH
Q 009506 302 DVVRALNRLPELGITPDDRFCGCLLN 327 (533)
Q Consensus 302 ~a~~~~~~m~~~g~~p~~~~~~~ll~ 327 (533)
+|.+.|++..+ +.|+-.+|-.=|.
T Consensus 167 ~A~~aykKaLe--ldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 167 EAIEAYKKALE--LDPDNESYKSNLK 190 (304)
T ss_pred HHHHHHHhhhc--cCCCcHHHHHHHH
Confidence 77777776654 4566666654443
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=96.36 E-value=1.2 Score=44.63 Aligned_cols=164 Identities=11% Similarity=0.139 Sum_probs=84.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 009506 114 LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY 193 (533)
Q Consensus 114 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 193 (533)
+|.-.-+..+.+.-++.-.+..+ +.||..+.-.++ +--.+....++.++|++..+.|- .. |.+...
T Consensus 174 IMq~AWRERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE----~~-------lg~s~~ 239 (539)
T PF04184_consen 174 IMQKAWRERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKAGE----AS-------LGKSQF 239 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHH----Hh-------hchhhh
Confidence 34444455566666666666555 345553322222 22234557788888887765431 00 001000
Q ss_pred hHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 009506 194 GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 273 (533)
Q Consensus 194 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 273 (533)
.+..-..++.+..+...+-..+-..+..++-+.|+.++|.+.|++|.+......+......|+.++...+.+.++..++.
T Consensus 240 ~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~ 319 (539)
T PF04184_consen 240 LQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLA 319 (539)
T ss_pred hhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 00001111222222222223333345555567788888888888887643212234466778888888888888888888
Q ss_pred HHHHcCCCCC-HHHHHHHH
Q 009506 274 EMLEAGFEPN-LFVLTSLI 291 (533)
Q Consensus 274 ~m~~~g~~p~-~~~~~~li 291 (533)
+..+...+.+ ...|+..+
T Consensus 320 kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 320 KYDDISLPKSATICYTAAL 338 (539)
T ss_pred HhccccCCchHHHHHHHHH
Confidence 7644332222 34555544
|
The molecular function of this protein is uncertain. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.62 Score=40.23 Aligned_cols=134 Identities=12% Similarity=0.069 Sum_probs=86.1
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHH
Q 009506 175 SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 254 (533)
Q Consensus 175 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ 254 (533)
.|++..--.|..+..+.|+..+|...|++...--+.-|....-.+.++....++..+|...++++.+...-.....+.-.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 46666666777777777777777777777766545556666667777777777777777777776654311112334455
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 009506 255 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 310 (533)
Q Consensus 255 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 310 (533)
+.+.|...|.+.+|+.-|+..... .|+...-...-..+.+.|+.+++..-+.++
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 667777778888788877777663 355444333344456667666655544444
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.061 Score=49.87 Aligned_cols=84 Identities=19% Similarity=0.186 Sum_probs=36.4
Q ss_pred cCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 009506 191 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 270 (533)
Q Consensus 191 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 270 (533)
.+++.+|+..|.+.++.... |.+-|..-..+|.+.|.++.|++-.+...... +--..+|..|-.+|...|++++|.+
T Consensus 94 ~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD--p~yskay~RLG~A~~~~gk~~~A~~ 170 (304)
T KOG0553|consen 94 NKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSID--PHYSKAYGRLGLAYLALGKYEEAIE 170 (304)
T ss_pred hhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHccCcHHHHHH
Confidence 34444444444444443222 34444444444444444444444444433321 1223444444444444444444444
Q ss_pred HHHHHHH
Q 009506 271 MFNEMLE 277 (533)
Q Consensus 271 ~~~~m~~ 277 (533)
.|++.++
T Consensus 171 aykKaLe 177 (304)
T KOG0553|consen 171 AYKKALE 177 (304)
T ss_pred HHHhhhc
Confidence 4444433
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.56 Score=42.26 Aligned_cols=176 Identities=14% Similarity=0.115 Sum_probs=81.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHH
Q 009506 113 TLIKLYGTAGNFDGCLNVYEEMKAIGV--KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW--NTYASLLRAY 188 (533)
Q Consensus 113 ~li~~~~~~g~~~~A~~~~~~m~~~g~--~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~ 188 (533)
.....+.+.|++.+|++.|+++..... +--....-.+..++.+.|+++.|...|+++.+.- |+. .-+...+.+.
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y--P~~~~~~~A~Y~~g~ 87 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY--PNSPKADYALYMLGL 87 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCcchhhHHHHHHH
Confidence 344555678888888888888876421 1122344566777888888888888888877542 221 2222222222
Q ss_pred HhcCChHHHHHHHHHHHHcCCC---cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCh
Q 009506 189 GRARYGEDTLSVYREMKEKGMQ---LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 265 (533)
Q Consensus 189 ~~~g~~~~a~~~~~~m~~~g~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 265 (533)
+......... ....... --...+..+|.-|=......+|...+..+... - ...--.+...|.+.|.+
T Consensus 88 ~~~~~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~----l-a~~e~~ia~~Y~~~~~y 157 (203)
T PF13525_consen 88 SYYKQIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR----L-AEHELYIARFYYKRGKY 157 (203)
T ss_dssp HHHHHHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH----H-HHHHHHHHHHHHCTT-H
T ss_pred HHHHhCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH----H-HHHHHHHHHHHHHcccH
Confidence 2111110000 0000000 00122333333343444444444444433321 0 00111245566677777
Q ss_pred HHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChhH
Q 009506 266 SEAEAMFNEMLEAGFEPNL----FVLTSLIQCYGKAQRTDD 302 (533)
Q Consensus 266 ~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~ 302 (533)
..|..-++.+.+. -|+. ...-.|+.+|.+.|..+.
T Consensus 158 ~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~ 196 (203)
T PF13525_consen 158 KAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQA 196 (203)
T ss_dssp HHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHH
Confidence 7777777766654 2332 334555666666666553
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.064 Score=43.89 Aligned_cols=47 Identities=13% Similarity=0.209 Sum_probs=21.5
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCcCHHHHHHHHH
Q 009506 175 SPNWNTYASLLRAYGRARYGEDTLSVYREMKEK-GMQLSVTLYNTLLA 221 (533)
Q Consensus 175 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-g~~~~~~~~~~li~ 221 (533)
.|+..+..+++.+|+..|++..|.++++...+. +++.+..+|..|+.
T Consensus 49 ~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 49 YPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 344444444555554444554444444444332 34444444444443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.24 Score=49.15 Aligned_cols=65 Identities=12% Similarity=0.078 Sum_probs=57.6
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 009506 106 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM----ITYNNLLDTMGRAKRPWQVKTIYKEMTDN 172 (533)
Q Consensus 106 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 172 (533)
.++..|+.+..+|.+.|++++|+..|++..+. .||. .+|..+..+|...|+.++|++.|++.++.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 36778999999999999999999999998874 5764 35899999999999999999999999885
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.024 Score=40.30 Aligned_cols=55 Identities=15% Similarity=0.180 Sum_probs=28.4
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009506 186 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 241 (533)
Q Consensus 186 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 241 (533)
..+.+.|++++|..+|+++.+.... +...+..+..++...|++++|...|+++.+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444555555555555555554422 444555555555555555555555555543
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.029 Score=40.37 Aligned_cols=59 Identities=19% Similarity=0.177 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHH
Q 009506 215 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG-KVSEAEAMFNEM 275 (533)
Q Consensus 215 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m 275 (533)
+|..+...+...|++++|+..|++..+.. +.+...|..+..+|.+.| ++++|.+.|++.
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELD--PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 34444444444444444444444444332 223444444444444444 344444444443
|
... |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.11 E-value=1.1 Score=43.97 Aligned_cols=32 Identities=13% Similarity=0.214 Sum_probs=22.3
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC
Q 009506 282 PNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 313 (533)
Q Consensus 282 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 313 (533)
.+--.+.+++.++.-.|+.++|.+..++|...
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 34455566777777777777777777777655
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.044 Score=46.44 Aligned_cols=70 Identities=16% Similarity=0.267 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCCHHH
Q 009506 215 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE-----AGFEPNLFV 286 (533)
Q Consensus 215 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~ 286 (533)
+...++..+...|++++|.++.+.+.... +-|...|..+|.+|...|+...|.++|+.+.. .|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d--P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD--PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS--TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 44555666667777777777777777654 45677777777777777777777777776542 366666544
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.041 Score=39.60 Aligned_cols=63 Identities=19% Similarity=0.187 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHh
Q 009506 178 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG-YTDEAFEIFEDMKS 241 (533)
Q Consensus 178 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~ 241 (533)
..+|..+...+...|++++|+..|++..+.... +...|..+..+|.+.| ++++|++.|++..+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 445555566666666666666666666655433 4555556666666666 46666666655443
|
... |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.1 Score=47.91 Aligned_cols=82 Identities=20% Similarity=0.298 Sum_probs=49.7
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----------------CChhHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 009506 264 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA----------------QRTDDVVRALNRLPELGITPDDRFCGCLLN 327 (533)
Q Consensus 264 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~----------------g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 327 (533)
.++-....++.|.+.|+..|..+|+.||..+=+- .+-+-++.++++|...|+.||..+-..|++
T Consensus 87 HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn 166 (406)
T KOG3941|consen 87 HVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVN 166 (406)
T ss_pred hHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHH
Confidence 3444444444455555555555555554443221 223457788888888888888888888888
Q ss_pred HHhcCCh--HHHHHHHHHHH
Q 009506 328 VMTQTPK--EELGKLVECVE 345 (533)
Q Consensus 328 ~~~~~~~--~~a~~~~~~~~ 345 (533)
++.+.+. ....++.-.|.
T Consensus 167 ~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 167 AFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HhccccccHHHHHHHHHhhh
Confidence 8888776 44444444333
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.12 Score=48.50 Aligned_cols=97 Identities=15% Similarity=0.132 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCCHHHH
Q 009506 214 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD----SWTFSSMITICSCRGKVSEAEAMFNEMLEAG--FEPNLFVL 287 (533)
Q Consensus 214 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~ 287 (533)
..|...+..+.+.|++++|...|+.+.+.. |+ ...+..+...|...|++++|...|+.+.+.- -......+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y---P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKY---PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHC---cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 345555555555677777777777766643 33 2455666677777777777777777766531 11123344
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhhC
Q 009506 288 TSLIQCYGKAQRTDDVVRALNRLPEL 313 (533)
Q Consensus 288 ~~li~~~~~~g~~~~a~~~~~~m~~~ 313 (533)
..+...|...|+.++|..+|+++.+.
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44555666677777777777766654
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.14 Score=48.00 Aligned_cols=97 Identities=9% Similarity=0.042 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHCC--CCCCHHHHH
Q 009506 109 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM----ITYNNLLDTMGRAKRPWQVKTIYKEMTDNG--LSPNWNTYA 182 (533)
Q Consensus 109 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~~~~ 182 (533)
..|...+..+.+.|++++|+..|+.+.+. .|+. ..+-.+..+|...|++++|...|+.+.+.- -+.....+-
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 34666666666778999999999988874 2443 456677788888888888888888888642 111234444
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHc
Q 009506 183 SLLRAYGRARYGEDTLSVYREMKEK 207 (533)
Q Consensus 183 ~ll~~~~~~g~~~~a~~~~~~m~~~ 207 (533)
.+...|...|+.++|..+|+++.+.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5566677778888888888877765
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.056 Score=45.79 Aligned_cols=97 Identities=20% Similarity=0.295 Sum_probs=44.4
Q ss_pred CHHHHHHHHHH---HHHcCChHHHHHHHHHHHHC--C-CCCCH------------------HHHHHHHHHHHhcCChhHH
Q 009506 107 DPNAFSTLIKL---YGTAGNFDGCLNVYEEMKAI--G-VKPNM------------------ITYNNLLDTMGRAKRPWQV 162 (533)
Q Consensus 107 ~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~--g-~~pd~------------------~~~~~li~~~~~~g~~~~a 162 (533)
|...|..++.. ....|+.+.+...++++... | +-++. .+...++..+...|++++|
T Consensus 2 D~~~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a 81 (146)
T PF03704_consen 2 DVDRFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEA 81 (146)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHH
Confidence 34445555433 34567888888888877653 1 11111 1122233333444555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 009506 163 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 204 (533)
Q Consensus 163 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m 204 (533)
+++.+.+.... +.|...|..+|.+|...|+...|.++|+.+
T Consensus 82 ~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 82 LRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 55555444432 234444555555555555555555444443
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.73 E-value=1.6 Score=39.95 Aligned_cols=143 Identities=14% Similarity=0.158 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHH--
Q 009506 179 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-- 256 (533)
Q Consensus 179 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li-- 256 (533)
.+.+.++..+.-.+.+.-...++.+.++...+.+......|...-.+.||.+.|...|++.++... +.|..+++.++
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~-kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQ-KLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHh-hhhccchhHHHHh
Confidence 355667777777788888889999999888777899999999999999999999999998877654 55666665544
Q ss_pred ---HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHH
Q 009506 257 ---TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCL 325 (533)
Q Consensus 257 ---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 325 (533)
..|.-.+++..|...|++..... .-|.+..|.=.-+..-.|+..+|++.++.|++. .|...+-+++
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~ 325 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESV 325 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhH
Confidence 34556778888888888876643 234444443333334468899999999999875 3555544433
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.08 Score=38.51 Aligned_cols=54 Identities=19% Similarity=0.137 Sum_probs=25.6
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 009506 222 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 277 (533)
Q Consensus 222 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 277 (533)
.|.+.+++++|.++++.+...+ +.+...|.....++.+.|++++|.+.|+...+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD--PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC--cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3444455555555555544433 23444444444445555555555555554444
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=95.69 E-value=2.1 Score=40.96 Aligned_cols=23 Identities=22% Similarity=0.463 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHH
Q 009506 161 QVKTIYKEMTDNGLSPNWNTYAS 183 (533)
Q Consensus 161 ~a~~~~~~m~~~g~~p~~~~~~~ 183 (533)
+.+.+++.|.+.|+.-+..+|-+
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~la 102 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLA 102 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHH
Confidence 34555566666665555554444
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.68 E-value=2.2 Score=41.31 Aligned_cols=298 Identities=13% Similarity=0.044 Sum_probs=178.4
Q ss_pred HHHHHHHHHH--HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HhcCChhHHHHHHHHHHHCCCCCCHH--HHHH
Q 009506 110 AFSTLIKLYG--TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM--GRAKRPWQVKTIYKEMTDNGLSPNWN--TYAS 183 (533)
Q Consensus 110 ~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~--~~~g~~~~a~~~~~~m~~~g~~p~~~--~~~~ 183 (533)
-|.+|-.++. -.|+-..|.++-.+-.+. +.-|....-.|+.+- .-.|+++.|.+-|+.|... |... -...
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRg 159 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRG 159 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHH
Confidence 3666766664 457888888877765432 334555555555543 3469999999999999852 3221 1223
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHH--HHHHHHHH-
Q 009506 184 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTF--SSMITICS- 260 (533)
Q Consensus 184 ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~--~~li~~~~- 260 (533)
|.-..-+.|..+.|.+.-+..-+.-.. -...+.+.+...+..|+++.|+++++.-+...++.+|..-- ..|+.+-.
T Consensus 160 LyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~ 238 (531)
T COG3898 160 LYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAM 238 (531)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Confidence 333445678888888888877665433 35778889999999999999999998877766556664332 23332221
Q ss_pred --hcCChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh--H
Q 009506 261 --CRGKVSEAEAMFNEMLEAGFEPNLFV-LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK--E 335 (533)
Q Consensus 261 --~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~--~ 335 (533)
-..+...|...-.+.. .+.||..- -..-..+|.+.|++.++-.+++.+-+....|+.. .+-...+.|+ .
T Consensus 239 s~ldadp~~Ar~~A~~a~--KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~~ar~gdta~ 312 (531)
T COG3898 239 SLLDADPASARDDALEAN--KLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA----LLYVRARSGDTAL 312 (531)
T ss_pred HHhcCChHHHHHHHHHHh--hcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH----HHHHHhcCCCcHH
Confidence 1223444444433332 34566432 2334567889999999999999998776555533 2233456666 3
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhh-ccCccchhhHHHHHHHHh-cCCHHHHHHHHHHHHh
Q 009506 336 ELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI-SKDVKKAYCNCLIDLCVN-LNLLENACKLLELGLT 413 (533)
Q Consensus 336 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~-~~~~~~~~~~~li~~~~~-~g~~~~A~~l~~~m~~ 413 (533)
.-.+-.+.+....++.....-....+-...|++ ..|..--+.. ...|....|--|.+.-.- .|+-.++...+-+..+
T Consensus 313 dRlkRa~~L~slk~nnaes~~~va~aAlda~e~-~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 313 DRLKRAKKLESLKPNNAESSLAVAEAALDAGEF-SAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHHHHHHhcCccchHHHHHHHHHHHhccch-HHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 333334444444555443333333333333443 3333322222 224556677777776544 4999999888888766
Q ss_pred ccccCC
Q 009506 414 LEVYTD 419 (533)
Q Consensus 414 ~g~~~~ 419 (533)
.--.|.
T Consensus 392 APrdPa 397 (531)
T COG3898 392 APRDPA 397 (531)
T ss_pred CCCCCc
Confidence 544444
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.54 Score=46.16 Aligned_cols=129 Identities=12% Similarity=0.159 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 009506 145 TYNNLLDTMGRAKRPWQVKTIYKEMTDNG-LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 223 (533)
Q Consensus 145 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 223 (533)
+|...|++..+..-++.|..+|-+..+.| +.+++.+++++|.-++. |+..-|..+|+--...- .-+..--+-.+.-+
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~f-~d~~~y~~kyl~fL 476 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLKF-PDSTLYKEKYLLFL 476 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHhC-CCchHHHHHHHHHH
Confidence 44444444444444444445554444444 33444444444444432 34444444444222210 10111122333334
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 009506 224 ADVGYTDEAFEIFEDMKSSENCQPD--SWTFSSMITICSCRGKVSEAEAMFNEMLE 277 (533)
Q Consensus 224 ~~~g~~~~A~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 277 (533)
..-++-+.|..+|+....+ +..+ ...|..+|+--..-|++..+..+=+.|.+
T Consensus 477 i~inde~naraLFetsv~r--~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 477 IRINDEENARALFETSVER--LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHhCcHHHHHHHHHHhHHH--HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 4444444455555422211 0111 23444555555555555555544444443
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.89 Score=38.05 Aligned_cols=85 Identities=12% Similarity=0.201 Sum_probs=45.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 009506 112 STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA 191 (533)
Q Consensus 112 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 191 (533)
..+|..+.+.+.......+++.+...+. .+...+|.+|..|++.+ ..+.++.++. ..+......+++.|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 3466666666677777777777666542 56666677777776543 2223333321 11222333355555555
Q ss_pred CChHHHHHHHHHH
Q 009506 192 RYGEDTLSVYREM 204 (533)
Q Consensus 192 g~~~~a~~~~~~m 204 (533)
+.++++..++.++
T Consensus 83 ~l~~~~~~l~~k~ 95 (140)
T smart00299 83 KLYEEAVELYKKD 95 (140)
T ss_pred CcHHHHHHHHHhh
Confidence 5555555555444
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=95.62 E-value=2.3 Score=41.09 Aligned_cols=106 Identities=15% Similarity=0.105 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 009506 250 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM 329 (533)
Q Consensus 250 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 329 (533)
.+.+..|.-+...|+...|.++-++.. .|+..-|...|.+|+..++|++..++-.. + -.+.-|..++.+|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s-k-----KsPIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS-K-----KSPIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-C-----CCCCChHHHHHHH
Confidence 345555666777788777777765542 37777788888888888888877765432 1 1235577778888
Q ss_pred hcCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHH
Q 009506 330 TQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATEL 375 (533)
Q Consensus 330 ~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~ 375 (533)
.+.|. .+|.+++..+.. .--+..|.++|++ .+|.+.
T Consensus 248 ~~~~~~~eA~~yI~k~~~---------~~rv~~y~~~~~~-~~A~~~ 284 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKIPD---------EERVEMYLKCGDY-KEAAQE 284 (319)
T ss_pred HHCCCHHHHHHHHHhCCh---------HHHHHHHHHCCCH-HHHHHH
Confidence 87777 777777666211 2334555666776 444433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.74 Score=43.05 Aligned_cols=99 Identities=12% Similarity=0.104 Sum_probs=59.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc---CChHHHHHHHHHHHHcCCCCCHHHHH
Q 009506 212 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR---GKVSEAEAMFNEMLEAGFEPNLFVLT 288 (533)
Q Consensus 212 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~~~~ 288 (533)
|...|-.|...|...|+.+.|..-|....+.. .++...+..+..++... .+-.++.++|+++.... +-|+.+..
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~--g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~ 231 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA--GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALS 231 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHH
Confidence 66667777777777777777777776665543 34444444444443322 23456667777766542 22444555
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhhC
Q 009506 289 SLIQCYGKAQRTDDVVRALNRLPEL 313 (533)
Q Consensus 289 ~li~~~~~~g~~~~a~~~~~~m~~~ 313 (533)
.|...+...|++.+|...|+.|.+.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc
Confidence 5556667777777777777777665
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=95.46 E-value=2.5 Score=40.39 Aligned_cols=130 Identities=20% Similarity=0.373 Sum_probs=88.0
Q ss_pred hHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh--cC----CHHHHHHHHHHHHhCCC--CCCCHHHHHHHHHHHHhcCC-
Q 009506 194 GEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD--VG----YTDEAFEIFEDMKSSEN--CQPDSWTFSSMITICSCRGK- 264 (533)
Q Consensus 194 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~--~g----~~~~A~~~~~~m~~~~~--~~p~~~~~~~li~~~~~~g~- 264 (533)
+++...+++.|++.|+.-+..+|-+..-.... .. ....|.++|+.|++... -.++...+..|+.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45568889999999999888777764443333 22 34679999999998642 23467777777666 3333
Q ss_pred ---hHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCC--hhHHHHHHHHhhhCCCCCCHHHHHHH
Q 009506 265 ---VSEAEAMFNEMLEAGFEPNL--FVLTSLIQCYGKAQR--TDDVVRALNRLPELGITPDDRFCGCL 325 (533)
Q Consensus 265 ---~~~A~~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~~~~~l 325 (533)
.+.++++|+.+.+.|+..+- .....++..+..... ...+.++++.+.+.|+++....|..+
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 46778889998888876653 333333333322222 45788899999999999888876643
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.94 Score=46.55 Aligned_cols=217 Identities=18% Similarity=0.177 Sum_probs=125.4
Q ss_pred CHHHHHHHHHHHHHcCChH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 009506 107 DPNAFSTLIKLYGTAGNFD--GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 184 (533)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 184 (533)
++-.+++.=++|.+-++.. +.+.-+++|+++|-.|+... +...|+-.|++.+|.++|.+ .|.. |..
T Consensus 597 eAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~---~G~e------nRA 664 (1081)
T KOG1538|consen 597 EALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR---SGHE------NRA 664 (1081)
T ss_pred hhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH---cCch------hhH
Confidence 3445667777887766544 44555677888888888754 34456678888888888864 3422 233
Q ss_pred HHHHHhcCChHHHHHHHHH-------H--HHc-CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH------HHhCCC--CC
Q 009506 185 LRAYGRARYGEDTLSVYRE-------M--KEK-GMQLSVTLYNTLLAMCADVGYTDEAFEIFED------MKSSEN--CQ 246 (533)
Q Consensus 185 l~~~~~~g~~~~a~~~~~~-------m--~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~------m~~~~~--~~ 246 (533)
+.+|...+.++.|.+++.. | +++ ....++.-=.+...++...|+.++|..+.-+ +.+.+. -.
T Consensus 665 lEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~ 744 (1081)
T KOG1538|consen 665 LEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDK 744 (1081)
T ss_pred HHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcch
Confidence 4555555555555444421 1 110 0000000001233445556666666655311 111110 03
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHH------
Q 009506 247 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR------ 320 (533)
Q Consensus 247 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~------ 320 (533)
.+..+...+...+.+...+..|.++|..|-+. ..+++.....++|++|+.+-+...+. .||+.
T Consensus 745 ~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqw 813 (1081)
T KOG1538|consen 745 AEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQW 813 (1081)
T ss_pred hhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHH
Confidence 34556666666667778888999999887542 34667778889999999988877653 33432
Q ss_pred -----HHHHHHHHHhcCCh-HHHHHHHHHHHh
Q 009506 321 -----FCGCLLNVMTQTPK-EELGKLVECVEK 346 (533)
Q Consensus 321 -----~~~~ll~~~~~~~~-~~a~~~~~~~~~ 346 (533)
-|...-.++.+.|+ .+|.++++++..
T Consensus 814 LAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 814 LAENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hhhhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 23444556667777 777777776554
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.43 E-value=1.1 Score=37.59 Aligned_cols=85 Identities=11% Similarity=0.140 Sum_probs=43.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc
Q 009506 147 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 226 (533)
Q Consensus 147 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 226 (533)
..+|..+.+.+........++.+...+ ..+...++.++..|++.+. .+..+.+.. . .+......++..|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~---~---~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN---K---SNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh---c---cccCCHHHHHHHHHHc
Confidence 345555555566666666666666555 2555666666666665432 222222221 1 1222233355555555
Q ss_pred CCHHHHHHHHHHH
Q 009506 227 GYTDEAFEIFEDM 239 (533)
Q Consensus 227 g~~~~A~~~~~~m 239 (533)
+.++++..++..+
T Consensus 83 ~l~~~~~~l~~k~ 95 (140)
T smart00299 83 KLYEEAVELYKKD 95 (140)
T ss_pred CcHHHHHHHHHhh
Confidence 5555555555444
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.39 E-value=3.2 Score=41.10 Aligned_cols=128 Identities=13% Similarity=0.034 Sum_probs=91.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhCC-CCCCHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCChhHHHHHHHHhhhh
Q 009506 286 VLTSLIQCYGKAQRTDDVVRALNRLPELG-ITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDI 364 (533)
Q Consensus 286 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 364 (533)
+|-..|.+..+..-++.|..+|.++.+.| +.++..++++++..++......|.++|+.-....++....+.-....+..
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~ 478 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIR 478 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 34455666666667788888999988888 56777788888888887766888888888777777776665333333333
Q ss_pred hccHHHHHHHHHhhhc----cCccchhhHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 009506 365 EGDFKKEATELFNSIS----KDVKKAYCNCLIDLCVNLNLLENACKLLELGLTL 414 (533)
Q Consensus 365 ~g~~~~~a~~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 414 (533)
.++- +.|..+|+... ..--...|..+|+--..-|++..+..+-+.|...
T Consensus 479 inde-~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 479 INDE-ENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred hCcH-HHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 3544 78888888433 2222458999999888899988887777766543
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.27 E-value=1 Score=42.18 Aligned_cols=105 Identities=14% Similarity=0.024 Sum_probs=50.7
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CChhHHHHHHHHhhhCCCCCCHHHH
Q 009506 246 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA---QRTDDVVRALNRLPELGITPDDRFC 322 (533)
Q Consensus 246 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~g~~p~~~~~ 322 (533)
+-|...|-.|...|...|+++.|..-|.+..+.- .+|...+..+..++... ....++..+|+++..... -|....
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~-~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDP-ANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC-ccHHHH
Confidence 3455566666666666666666666665554421 13344444444433222 123345555555554321 123344
Q ss_pred HHHHHHHhcCCh-HHHHHHHHHHHhcCCChh
Q 009506 323 GCLLNVMTQTPK-EELGKLVECVEKSNSKLG 352 (533)
Q Consensus 323 ~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~ 352 (533)
..|...+...|+ .+|...++.|.+..|..+
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 444445555555 555555655555544443
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.27 E-value=3.2 Score=42.84 Aligned_cols=95 Identities=11% Similarity=0.098 Sum_probs=51.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCChHHHHHHH---------HHHHHCCCCCCHHHHHHHHHHHHhcCChh--HHHHHHHHHHH
Q 009506 103 KWRIDPNAFSTLIKLYGTAGNFDGCLNVY---------EEMKAIGVKPNMITYNNLLDTMGRAKRPW--QVKTIYKEMTD 171 (533)
Q Consensus 103 g~~~~~~~~~~li~~~~~~g~~~~A~~~~---------~~m~~~g~~pd~~~~~~li~~~~~~g~~~--~a~~~~~~m~~ 171 (533)
.+.+.++.+.+-+..|...|.+++|.++- +.+... ..+.-.++..=.+|.+..+.. +.+.-+++|.+
T Consensus 551 ~i~~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~ 628 (1081)
T KOG1538|consen 551 SISAVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKK 628 (1081)
T ss_pred eeecccccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 45667777888888888999999887652 111111 123333444445555544432 23333455556
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 009506 172 NGLSPNWNTYASLLRAYGRARYGEDTLSVYR 202 (533)
Q Consensus 172 ~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 202 (533)
+|-.|+.... ...++-.|++.+|-++|.
T Consensus 629 rge~P~~iLl---A~~~Ay~gKF~EAAklFk 656 (1081)
T KOG1538|consen 629 RGETPNDLLL---ADVFAYQGKFHEAAKLFK 656 (1081)
T ss_pred cCCCchHHHH---HHHHHhhhhHHHHHHHHH
Confidence 6655665432 233444566666666653
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.057 Score=39.97 Aligned_cols=63 Identities=29% Similarity=0.432 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCC-CC-HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 009506 108 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAI----GVK-PN-MITYNNLLDTMGRAKRPWQVKTIYKEMT 170 (533)
Q Consensus 108 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~-pd-~~~~~~li~~~~~~g~~~~a~~~~~~m~ 170 (533)
..+|+.+...|.+.|++++|+..|++..+. |-. |+ ..+++.+..++...|++++|++.+++..
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345777777888888888888888776532 111 11 3455666666667777777776666554
|
... |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.34 Score=46.97 Aligned_cols=193 Identities=11% Similarity=0.065 Sum_probs=96.9
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHH--HC--CC-CCCHHHHHHHHHH
Q 009506 117 LYGTAGNFDGCLNVYEEMKAIGVKPNM----ITYNNLLDTMGRAKRPWQVKTIYKEMT--DN--GL-SPNWNTYASLLRA 187 (533)
Q Consensus 117 ~~~~~g~~~~A~~~~~~m~~~g~~pd~----~~~~~li~~~~~~g~~~~a~~~~~~m~--~~--g~-~p~~~~~~~ll~~ 187 (533)
-++|.|+...-..+|+...+.|.. |. .+|..|-++|.-.+++++|++....=+ .+ |- .-.......|-+.
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 468899999999999999887743 43 346666677777888888887754321 11 10 0112233334444
Q ss_pred HHhcCChHHHHHHHHH----HHHcCCC-cCHHHHHHHHHHHHhcCCH--------------------HHHHHHHHH----
Q 009506 188 YGRARYGEDTLSVYRE----MKEKGMQ-LSVTLYNTLLAMCADVGYT--------------------DEAFEIFED---- 238 (533)
Q Consensus 188 ~~~~g~~~~a~~~~~~----m~~~g~~-~~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~---- 238 (533)
+--.|.+++|.-.-.+ ..+.|-+ .....+..|...|...|+. +.|.++|.+
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 4555677777443222 2222211 1233455566666665532 223333321
Q ss_pred HHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH----HcCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 009506 239 MKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML----EAGFEP-NLFVLTSLIQCYGKAQRTDDVVRALNRL 310 (533)
Q Consensus 239 m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m 310 (533)
+.+.|.--.-...|..|.+.|--.|+++.|....+.-. +.|-+. ....+..|-.++.-.|+++.|.+.|+..
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~t 261 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLT 261 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHH
Confidence 11111101122334444455555566666665544322 122111 1234555555555666666666665553
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.083 Score=39.06 Aligned_cols=24 Identities=17% Similarity=0.180 Sum_probs=11.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHH
Q 009506 251 TFSSMITICSCRGKVSEAEAMFNE 274 (533)
Q Consensus 251 ~~~~li~~~~~~g~~~~A~~~~~~ 274 (533)
++..+...|...|++++|.+.+++
T Consensus 48 ~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 48 TLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344444444444444444444444
|
... |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.1 Score=37.90 Aligned_cols=56 Identities=20% Similarity=0.141 Sum_probs=31.7
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 009506 186 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 242 (533)
Q Consensus 186 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 242 (533)
..|.+.+++++|.++++.+...+.. +...|......+.+.|++++|.+.|+...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3455556666666666666555433 4555555555566666666666666655543
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.03 E-value=3.3 Score=43.15 Aligned_cols=175 Identities=10% Similarity=0.109 Sum_probs=86.9
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH-CCCCC--------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 009506 140 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD-NGLSP--------NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 210 (533)
Q Consensus 140 ~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p--------~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~ 210 (533)
.|....|..|.......-.++-|...|-+... .|++. +...-.+=+.+| -|++++|+++|-+|-++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drr--- 763 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRR--- 763 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchh---
Confidence 47777887777665555555555555544332 12211 111111223333 47888888888877665
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 009506 211 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 290 (533)
Q Consensus 211 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 290 (533)
| ..|..+.+.|++-...++++.-.....=.--...|+.+...++....+++|.+.|..-.. . ...
T Consensus 764 -D-----LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~------~---e~~ 828 (1189)
T KOG2041|consen 764 -D-----LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD------T---ENQ 828 (1189)
T ss_pred -h-----hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------h---HhH
Confidence 2 235666777777766666543111000001134566666666666666666666644211 0 123
Q ss_pred HHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHH
Q 009506 291 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGK 339 (533)
Q Consensus 291 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~ 339 (533)
+.+|.+..++++...+-+.+. -|....-.+..++...|. ++|.+
T Consensus 829 ~ecly~le~f~~LE~la~~Lp-----e~s~llp~~a~mf~svGMC~qAV~ 873 (1189)
T KOG2041|consen 829 IECLYRLELFGELEVLARTLP-----EDSELLPVMADMFTSVGMCDQAVE 873 (1189)
T ss_pred HHHHHHHHhhhhHHHHHHhcC-----cccchHHHHHHHHHhhchHHHHHH
Confidence 444444444444433333332 233344445555555555 44444
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.62 Score=47.23 Aligned_cols=157 Identities=13% Similarity=0.104 Sum_probs=103.7
Q ss_pred HHHHcCChHHHHHHHH--HHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 009506 117 LYGTAGNFDGCLNVYE--EMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 194 (533)
Q Consensus 117 ~~~~~g~~~~A~~~~~--~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 194 (533)
...-.|+++++.++.+ ++.. .+ +..-.+.++.-+-+.|..+.|+++-+.-. .-.....++|++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L 334 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNL 334 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-H
T ss_pred HHHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCH
Confidence 3445788888777775 2221 11 24557888888889999999987765432 235666778888
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 009506 195 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 274 (533)
Q Consensus 195 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 274 (533)
+.|.++.++.. +...|..|.+...+.|+++.|++.|++... |..|+-.|.-.|+.+.-.++.+.
T Consensus 335 ~~A~~~a~~~~------~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d----------~~~L~lLy~~~g~~~~L~kl~~~ 398 (443)
T PF04053_consen 335 DIALEIAKELD------DPEKWKQLGDEALRQGNIELAEECYQKAKD----------FSGLLLLYSSTGDREKLSKLAKI 398 (443)
T ss_dssp HHHHHHCCCCS------THHHHHHHHHHHHHTTBHHHHHHHHHHCT-----------HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHhcC------cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC----------ccccHHHHHHhCCHHHHHHHHHH
Confidence 88887764432 667899999999999999999999887654 66777788888888888888777
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 009506 275 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 310 (533)
Q Consensus 275 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 310 (533)
....|- ++....++...|+.++..+++.+-
T Consensus 399 a~~~~~------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 399 AEERGD------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHccC------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 666552 555666667778888888777654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.83 Score=45.49 Aligned_cols=66 Identities=12% Similarity=0.011 Sum_probs=58.4
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 009506 140 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW----NTYASLLRAYGRARYGEDTLSVYREMKEK 207 (533)
Q Consensus 140 ~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 207 (533)
+.+...|+.+..+|.+.|++++|+..|++.++. .|+. .+|..+..+|.+.|++++|++.+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456788999999999999999999999998885 4664 46899999999999999999999999885
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=94.69 E-value=4.8 Score=39.56 Aligned_cols=34 Identities=18% Similarity=-0.014 Sum_probs=25.9
Q ss_pred CHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCCh
Q 009506 318 DDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKL 351 (533)
Q Consensus 318 ~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~ 351 (533)
|-.-+.+++.++.-.|+ +.+.+..+++.+..|..
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 33466778888888888 88888898888776553
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=94.57 E-value=1.2 Score=38.05 Aligned_cols=88 Identities=11% Similarity=0.063 Sum_probs=63.5
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh
Q 009506 222 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 301 (533)
Q Consensus 222 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 301 (533)
-+...|++++|..+|.-+..-+ .-+..-|..|..+|-..+++++|...|......+. -|...+--.-++|...|+.+
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d--~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYD--FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHH
Confidence 3456788888888888877655 34555667777777788888888888877654332 34444555677888888888
Q ss_pred HHHHHHHHhhh
Q 009506 302 DVVRALNRLPE 312 (533)
Q Consensus 302 ~a~~~~~~m~~ 312 (533)
.|...|....+
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 88888887766
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=94.24 E-value=5.7 Score=38.49 Aligned_cols=107 Identities=17% Similarity=0.193 Sum_probs=64.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhhh
Q 009506 286 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDI 364 (533)
Q Consensus 286 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 364 (533)
+.+..|.-+...|+...|.++-++.. .||...|-.-+.+++..++ ++..++... .+.-... ..++..+.+
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s-kKsPIGy----epFv~~~~~ 249 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS-KKSPIGY----EPFVEACLK 249 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-CCCCCCh----HHHHHHHHH
Confidence 44555666667777777777766552 3677778888888888877 666665443 2222222 223333334
Q ss_pred hccHHHHHHHHHhhhccCccchhhHHHHHHHHhcCCHHHHHHHHH
Q 009506 365 EGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLE 409 (533)
Q Consensus 365 ~g~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 409 (533)
.|+. .+|..++.++. +..-+..|.++|++.+|.+.--
T Consensus 250 ~~~~-~eA~~yI~k~~-------~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 250 YGNK-KEASKYIPKIP-------DEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred CCCH-HHHHHHHHhCC-------hHHHHHHHHHCCCHHHHHHHHH
Confidence 4553 66777666632 2456677777777777766544
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.21 E-value=2.5 Score=34.39 Aligned_cols=64 Identities=19% Similarity=0.301 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 009506 215 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 280 (533)
Q Consensus 215 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 280 (533)
..+..++...+.|.-+.-.+++.++.+.+ .++......+..+|.+.|+..++.+++++.-+.|+
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~--~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKNE--EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH-------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 34444555555566666666665555433 45555555556666666666666666665555553
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.15 E-value=1.6 Score=41.29 Aligned_cols=116 Identities=6% Similarity=-0.052 Sum_probs=60.7
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChHH
Q 009506 121 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW----NTYASLLRAYGRARYGED 196 (533)
Q Consensus 121 ~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~ 196 (533)
.|++.+|-..++++.+. .+-|...++..=.+|.-.|+.+.-...++++... ..+|. .....+.-++..+|-+++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 34555555555555543 3445555555556666666666666666655532 11222 222222333345666666
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009506 197 TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 239 (533)
Q Consensus 197 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 239 (533)
|++.-++..+.+.. |...-.++...+-..|++.++.++..+-
T Consensus 194 AEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 194 AEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred HHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 66666655554322 5555555555566666666666665443
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.3 Score=47.25 Aligned_cols=259 Identities=15% Similarity=0.037 Sum_probs=150.3
Q ss_pred hhHHHHHhhcCC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHH--HHC--CCC-CCHHHHHHHHHHHHhcCChhHHHH
Q 009506 93 KSYDTRARNEKW---RIDPNAFSTLIKLYGTAGNFDGCLNVYEEM--KAI--GVK-PNMITYNNLLDTMGRAKRPWQVKT 164 (533)
Q Consensus 93 ~~l~~~~~~~g~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~--g~~-pd~~~~~~li~~~~~~g~~~~a~~ 164 (533)
-.++...++.|- +.=..+|+.|-.+|.-.++|++|++...-= ..+ |-+ -...+...|-+.+--.|.+++|+-
T Consensus 37 v~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fdeA~~ 116 (639)
T KOG1130|consen 37 VDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEALT 116 (639)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccchHHH
Confidence 344455555552 222345777777777788888888875321 111 100 011223334444555677777654
Q ss_pred HHH----HHHHCCCC-CCHHHHHHHHHHHHhcCC--------------------hHHHHHHHHHHH----HcCCC-cCHH
Q 009506 165 IYK----EMTDNGLS-PNWNTYASLLRAYGRARY--------------------GEDTLSVYREMK----EKGMQ-LSVT 214 (533)
Q Consensus 165 ~~~----~m~~~g~~-p~~~~~~~ll~~~~~~g~--------------------~~~a~~~~~~m~----~~g~~-~~~~ 214 (533)
.-. -..+.|-+ .....+-.|-..|...|+ ++.|.+.|.+=. +.|-. .--.
T Consensus 117 cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGR 196 (639)
T KOG1130|consen 117 CCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGR 196 (639)
T ss_pred HHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcc
Confidence 322 22233311 122345556677765443 233344443211 12211 0123
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH----HhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH----cC-CCCCHH
Q 009506 215 LYNTLLAMCADVGYTDEAFEIFEDM----KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE----AG-FEPNLF 285 (533)
Q Consensus 215 ~~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g-~~p~~~ 285 (533)
.|..|.+.|.-.|+++.|+...+.- ++-|.-......+..+.+++.-.|+++.|.+.|+.-.. .| -.....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 5666667777788999998887543 23332123466788999999999999999999987543 22 222345
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhh----CC-CCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCCh
Q 009506 286 VLTSLIQCYGKAQRTDDVVRALNRLPE----LG-ITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKL 351 (533)
Q Consensus 286 ~~~~li~~~~~~g~~~~a~~~~~~m~~----~g-~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~ 351 (533)
+.-+|-..|.-..++++|+.++.+-.. .+ ..-....|-+|-.++...|. +.|..+.+.-.+.....
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev 348 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEV 348 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Confidence 666788888888889999998877432 22 22233467778888888887 88888877766554433
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=94.07 E-value=3.5 Score=35.47 Aligned_cols=133 Identities=14% Similarity=0.120 Sum_probs=65.4
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 009506 129 NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 208 (533)
Q Consensus 129 ~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 208 (533)
+.+..+.+.++.|+...|..+|+.+.+.|++.. +.++...++-+|.......+-.+.. ....+.++=-.|..+
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH-
Confidence 334445556666777777777777777766443 3444455555555444433332222 223333333333322
Q ss_pred CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009506 209 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 276 (533)
Q Consensus 209 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 276 (533)
=...+..++..+...|++-+|+++.+..... +......++.+-.+.+|...-..+|+-..
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~~~~-----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQYHKV-----DSVPARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc-----ccCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 0113455566666677777777766654322 11222344555555555444444444433
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=94.01 E-value=1.9 Score=36.77 Aligned_cols=86 Identities=12% Similarity=-0.012 Sum_probs=63.0
Q ss_pred HhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHH
Q 009506 189 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 268 (533)
Q Consensus 189 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 268 (533)
-..|++++|..+|.-+.-.++. +..-|..|..+|-..+++++|+..|...-..+ .-|...+-.+..+|...|+.+.|
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~--~~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL--KNDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--cCCCCccchHHHHHHHhCCHHHH
Confidence 4568888888888887775544 55566677777777888888888887765544 23444455667788888888888
Q ss_pred HHHHHHHHH
Q 009506 269 EAMFNEMLE 277 (533)
Q Consensus 269 ~~~~~~m~~ 277 (533)
...|....+
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 888888766
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.92 Score=46.01 Aligned_cols=134 Identities=13% Similarity=0.094 Sum_probs=101.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009506 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 186 (533)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 186 (533)
+....+.++..+-+.|..+.|+++-++-. .-.....+.|+++.|.++-++ ..+...|..|.+
T Consensus 294 ~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~ 355 (443)
T PF04053_consen 294 PKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKE------LDDPEKWKQLGD 355 (443)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHH
Confidence 45568999999999999999999876542 233445679999999876543 347889999999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChH
Q 009506 187 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 266 (533)
Q Consensus 187 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 266 (533)
...+.|+++-|++.|.+..+ |..|+-.|.-.|+.+...++.+.....|. ++....++...|+++
T Consensus 356 ~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~-------~n~af~~~~~lgd~~ 419 (443)
T PF04053_consen 356 EALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD-------INIAFQAALLLGDVE 419 (443)
T ss_dssp HHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT--------HHHHHHHHHHHT-HH
T ss_pred HHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC-------HHHHHHHHHHcCCHH
Confidence 99999999999999988654 56777788889999999999988888774 666677777788888
Q ss_pred HHHHHHHH
Q 009506 267 EAEAMFNE 274 (533)
Q Consensus 267 ~A~~~~~~ 274 (533)
+..+++.+
T Consensus 420 ~cv~lL~~ 427 (443)
T PF04053_consen 420 ECVDLLIE 427 (443)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887754
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=93.96 E-value=3 Score=42.90 Aligned_cols=145 Identities=18% Similarity=0.177 Sum_probs=87.6
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCcC-----HHHHHHHHHHHHh----cCCHHHH
Q 009506 163 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK-GMQLS-----VTLYNTLLAMCAD----VGYTDEA 232 (533)
Q Consensus 163 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-g~~~~-----~~~~~~li~~~~~----~g~~~~A 232 (533)
.-+|+-+... ++| .+..++...+-.|+-+.+++.+.+-.+. |+.-. .-.|+.++..++. ..+.+.|
T Consensus 177 ~G~f~L~lSl-LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a 252 (468)
T PF10300_consen 177 FGLFNLVLSL-LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEA 252 (468)
T ss_pred HHHHHHHHHh-CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHH
Confidence 4455555543 222 3445666666677777777777665543 22211 2334444444433 3567788
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHH-HHHHHhcCChHHHHHHHHHHHHc--C-CCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 009506 233 FEIFEDMKSSENCQPDSWTFSSM-ITICSCRGKVSEAEAMFNEMLEA--G-FEPNLFVLTSLIQCYGKAQRTDDVVRALN 308 (533)
Q Consensus 233 ~~~~~~m~~~~~~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~--g-~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 308 (533)
.++++.+.+. -|+...|... .+.+...|++++|.+.|+..... . -+.....+--+.-++.-..+|++|...|.
T Consensus 253 ~~lL~~~~~~---yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~ 329 (468)
T PF10300_consen 253 EELLEEMLKR---YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFL 329 (468)
T ss_pred HHHHHHHHHh---CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHH
Confidence 8888888775 3666666544 56667788888888888864431 1 11233445556666777888888888888
Q ss_pred HhhhCC
Q 009506 309 RLPELG 314 (533)
Q Consensus 309 ~m~~~g 314 (533)
++.+.+
T Consensus 330 ~L~~~s 335 (468)
T PF10300_consen 330 RLLKES 335 (468)
T ss_pred HHHhcc
Confidence 887653
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=93.96 E-value=4.5 Score=36.34 Aligned_cols=170 Identities=11% Similarity=0.001 Sum_probs=86.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc
Q 009506 149 LLDTMGRAKRPWQVKTIYKEMTDNG--LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 226 (533)
Q Consensus 149 li~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 226 (533)
....+...|++.+|++.|+.+...- -+--....-.++.++.+.|+++.|...++++.+.-..-...-+...+.+.+..
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence 3444567888888888888888642 11123455567778888888888888888887753332222233223222211
Q ss_pred CCHHHHHHHHHHHHhCCCCCCC-------HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 009506 227 GYTDEAFEIFEDMKSSENCQPD-------SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 299 (533)
Q Consensus 227 g~~~~A~~~~~~m~~~~~~~p~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 299 (533)
....... . ...| ...|..+|.-|=......+|.+.+..+.+. . ...-..+..-|.+.|.
T Consensus 91 ~~~~~~~-------~---~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~---l-a~~e~~ia~~Y~~~~~ 156 (203)
T PF13525_consen 91 KQIPGIL-------R---SDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR---L-AEHELYIARFYYKRGK 156 (203)
T ss_dssp HHHHHHH-----------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH---H-HHHHHHHHHHHHCTT-
T ss_pred HhCccch-------h---cccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHccc
Confidence 1111110 0 0111 123344444555555566666655554331 0 1111235566778888
Q ss_pred hhHHHHHHHHhhhCCCCCCH----HHHHHHHHHHhcCCh
Q 009506 300 TDDVVRALNRLPELGITPDD----RFCGCLLNVMTQTPK 334 (533)
Q Consensus 300 ~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~ 334 (533)
+..|..-++.+.+. -|+. .....++.++.+.|.
T Consensus 157 y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~ 193 (203)
T PF13525_consen 157 YKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGL 193 (203)
T ss_dssp HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCC
Confidence 88888888777664 2332 244555556666555
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.78 E-value=4.7 Score=35.91 Aligned_cols=228 Identities=13% Similarity=0.042 Sum_probs=130.2
Q ss_pred cCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHH
Q 009506 121 AGNFDGCLNVYEEMKAIGVK-PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN-GLSPNWNTYASLLRAYGRARYGEDTL 198 (533)
Q Consensus 121 ~g~~~~A~~~~~~m~~~g~~-pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~g~~~~a~ 198 (533)
.+.+..+...+......... .....+......+...+.+..+...+...... ........+..+...+...+.+..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 45566666666665543221 12456666666667777777777666666542 22344555666666666666777777
Q ss_pred HHHHHHHHcCCCcCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009506 199 SVYREMKEKGMQLSVTLYNTLLA-MCADVGYTDEAFEIFEDMKSSENC-QPDSWTFSSMITICSCRGKVSEAEAMFNEML 276 (533)
Q Consensus 199 ~~~~~m~~~g~~~~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 276 (533)
..+.......... ......... .+...|+++.|...+++....... ......+......+...++.+.+...+....
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 7777666643332 122222222 567777777777777776442100 0233444444445667777777777777766
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCC
Q 009506 277 EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSK 350 (533)
Q Consensus 277 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~ 350 (533)
..........+..+-..+...++.+.+...+......... ....+..+...+...+. +++...+.......+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 195 KLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred hhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 5421113566666777777777777777777777654321 12333334444444444 7777777766666665
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=93.47 E-value=9.6 Score=38.53 Aligned_cols=182 Identities=12% Similarity=0.104 Sum_probs=127.5
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHH
Q 009506 141 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 220 (533)
Q Consensus 141 pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 220 (533)
.|....-++|..++.+-+..-+..+-.+|+.-| -+...|-.++..|... .-+.-..+++++.+..+. |++.-..|.
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence 466677788999998888888999999999865 6788899999999888 667788889988887665 555555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHH
Q 009506 221 AMCADVGYTDEAFEIFEDMKSSENCQP----DSWTFSSMITICSCRGKVSEAEAMFNEMLE-AGFEPNLFVLTSLIQCYG 295 (533)
Q Consensus 221 ~~~~~~g~~~~A~~~~~~m~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~li~~~~ 295 (533)
.-|-+ ++...+..+|......-+.+. =...|.-|+..- ..+.+...++...+.. .|...-.+.+..+-.-|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 55555 888888888877765442000 122444444321 3567777777777655 455556677777778888
Q ss_pred hcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHh
Q 009506 296 KAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 330 (533)
Q Consensus 296 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 330 (533)
...++++|++++..+.+..-+ |...-..++.-+.
T Consensus 217 ~~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~~lR 250 (711)
T COG1747 217 ENENWTEAIRILKHILEHDEK-DVWARKEIIENLR 250 (711)
T ss_pred cccCHHHHHHHHHHHhhhcch-hhhHHHHHHHHHH
Confidence 999999999999988776422 4444444554443
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.44 E-value=6.8 Score=36.75 Aligned_cols=143 Identities=10% Similarity=0.079 Sum_probs=84.9
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCh
Q 009506 186 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 265 (533)
Q Consensus 186 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 265 (533)
......|++.+|..+|+.......+ +...--.+..+|...|+.+.|..++..+..... .........-|..+.+....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~-~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ-DKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccch-hhHHHHHHHHHHHHHHHhcC
Confidence 3445677888888888777765433 345555677788888888888888887765432 22233333345555555555
Q ss_pred HHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCC-CCCHHHHHHHHHHHhcCC
Q 009506 266 SEAEAMFNEMLEAGFEP-NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI-TPDDRFCGCLLNVMTQTP 333 (533)
Q Consensus 266 ~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~ 333 (533)
.+...+-.+.-. .| |...-..+...|...|+.++|.+.+-.+.+.+. .-|...-..|+..+.--|
T Consensus 220 ~~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 220 PEIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred CCHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 555555444443 25 666667777888888888888886655544321 223333444444444333
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.32 E-value=7.3 Score=38.25 Aligned_cols=151 Identities=13% Similarity=-0.009 Sum_probs=77.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH--HHhcCChHHHHHHHHHHHHcCCCCCHHHHHH---H------
Q 009506 222 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI--CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS---L------ 290 (533)
Q Consensus 222 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~---l------ 290 (533)
++.-.|++++|.++--.+.+.. ....+...+++ +--.++.+.|...|.+-+..+ |+-..--. +
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld----~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~ 251 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLD----ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEV 251 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcc----cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHH
Confidence 4555677777777666555432 12222333332 234556667777776655432 43322111 1
Q ss_pred ----HHHHHhcCChhHHHHHHHHhhhC---CCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhh
Q 009506 291 ----IQCYGKAQRTDDVVRALNRLPEL---GITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQ 362 (533)
Q Consensus 291 ----i~~~~~~g~~~~a~~~~~~m~~~---g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 362 (533)
-.-..+.|++..|.+.|.+.+.. ++.++...|.....+..+.|+ .+++.--+...+.++.....+-.-..++
T Consensus 252 ~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~ 331 (486)
T KOG0550|consen 252 KKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCH 331 (486)
T ss_pred HHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHH
Confidence 11234567777777777776543 233444455555555556666 6666655555555444333332233444
Q ss_pred hhhccHHHHHHHHHhhh
Q 009506 363 DIEGDFKKEATELFNSI 379 (533)
Q Consensus 363 ~~~g~~~~~a~~~~~~~ 379 (533)
...++| ++|.+-|++.
T Consensus 332 l~le~~-e~AV~d~~~a 347 (486)
T KOG0550|consen 332 LALEKW-EEAVEDYEKA 347 (486)
T ss_pred HHHHHH-HHHHHHHHHH
Confidence 444555 6666665553
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.29 E-value=8.6 Score=37.49 Aligned_cols=268 Identities=13% Similarity=0.083 Sum_probs=157.5
Q ss_pred CCCHHHHHHHHHHH--HHcCChHHHHHHHHHHHHCCCCCCHHHHH----HHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 009506 105 RIDPNAFSTLIKLY--GTAGNFDGCLNVYEEMKAIGVKPNMITYN----NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 178 (533)
Q Consensus 105 ~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~pd~~~~~----~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 178 (533)
..|..-.-.|+.+- .-.|+++.|.+-|+.|.. |..+-- .|.-..-+.|+.+.|...-++.-+.- +--.
T Consensus 115 ssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~ 188 (531)
T COG3898 115 SSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLP 188 (531)
T ss_pred hccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCc
Confidence 33444444444443 347999999999999986 333322 23333346788888888777766542 2334
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCcCHHH--HHHHHHHHH---hcCCHHHHHHHHHHHHhCCCCCCCHHHH
Q 009506 179 NTYASLLRAYGRARYGEDTLSVYREMKEK-GMQLSVTL--YNTLLAMCA---DVGYTDEAFEIFEDMKSSENCQPDSWTF 252 (533)
Q Consensus 179 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-g~~~~~~~--~~~li~~~~---~~g~~~~A~~~~~~m~~~~~~~p~~~~~ 252 (533)
..+.+++...+..|+++.|+++++.-+.. -+++++.- -..|+.+-+ -.-+...|...-.+..+ +.||.+--
T Consensus 189 WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K---L~pdlvPa 265 (531)
T COG3898 189 WAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK---LAPDLVPA 265 (531)
T ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh---cCCccchH
Confidence 77889999999999999999999977653 23444322 223332211 12345555555544444 36664433
Q ss_pred -HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC-CCCCCHH-HHHHHHHHH
Q 009506 253 -SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL-GITPDDR-FCGCLLNVM 329 (533)
Q Consensus 253 -~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~-~~~~ll~~~ 329 (533)
......+.+.|+..++-.+++.+-+.. |....+. .|.+..--|.++.-+++.... .++||.. ..-.+..+-
T Consensus 266 av~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia~----lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aA 339 (531)
T COG3898 266 AVVAARALFRDGNLRKGSKILETAWKAE--PHPDIAL----LYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAA 339 (531)
T ss_pred HHHHHHHHHhccchhhhhhHHHHHHhcC--CChHHHH----HHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence 344678899999999999999998864 5544432 344444444455545444332 2445543 445566666
Q ss_pred hcCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhccCccchhh
Q 009506 330 TQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYC 388 (533)
Q Consensus 330 ~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~ 388 (533)
...|+ ..+..-.+......|....+.-+--..-...|+. .++...+-+....|..+.|
T Consensus 340 lda~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDq-g~vR~wlAqav~APrdPaW 398 (531)
T COG3898 340 LDAGEFSAARAKAEAAAREAPRESAYLLLADIEEAETGDQ-GKVRQWLAQAVKAPRDPAW 398 (531)
T ss_pred HhccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCch-HHHHHHHHHHhcCCCCCcc
Confidence 66666 5555555555566665554432222223344665 6777777665544433333
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.26 E-value=6.4 Score=35.84 Aligned_cols=209 Identities=16% Similarity=0.150 Sum_probs=121.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009506 108 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 187 (533)
Q Consensus 108 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 187 (533)
...|..-..+|....++++|...+.+..+ +.+-|...|+ ....++.|.-+.++|.+. .--+..|+-...+
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~-~yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~l 100 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASK-GYENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASEL 100 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHH-HHHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHH
Confidence 45577777888888999998887766653 1222333332 233456666666776653 1223567777888
Q ss_pred HHhcCChHHHHHHHHHHHHc--CCCcCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC
Q 009506 188 YGRARYGEDTLSVYREMKEK--GMQLSV--TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 263 (533)
Q Consensus 188 ~~~~g~~~~a~~~~~~m~~~--g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 263 (533)
|..+|..+-|-..+++.-+. +..|+. ..|.--+......++...|.+ .|..+-+++.+..
T Consensus 101 Y~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~e----------------l~gk~sr~lVrl~ 164 (308)
T KOG1585|consen 101 YVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFE----------------LYGKCSRVLVRLE 164 (308)
T ss_pred HHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHH----------------HHHHhhhHhhhhH
Confidence 89999988887777655431 233332 122222222222222222222 3344455677777
Q ss_pred ChHHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHhhhCC---CCCCHHHHHHHHHHHhcCChH
Q 009506 264 KVSEAEAMFNEMLEA----GFEPNL-FVLTSLIQCYGKAQRTDDVVRALNRLPELG---ITPDDRFCGCLLNVMTQTPKE 335 (533)
Q Consensus 264 ~~~~A~~~~~~m~~~----g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g---~~p~~~~~~~ll~~~~~~~~~ 335 (533)
.+++|-..|.+-... .-.++. ..|...|-.|....++..|...+++--+.+ -.-|..+...||.+|-....+
T Consensus 165 kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd~gD~E 244 (308)
T KOG1585|consen 165 KFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYDEGDIE 244 (308)
T ss_pred HhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhccCCHH
Confidence 777776665543211 111222 345566667777788999999998854432 233455888888888765556
Q ss_pred HHHHHHH
Q 009506 336 ELGKLVE 342 (533)
Q Consensus 336 ~a~~~~~ 342 (533)
++.+++.
T Consensus 245 ~~~kvl~ 251 (308)
T KOG1585|consen 245 EIKKVLS 251 (308)
T ss_pred HHHHHHc
Confidence 6666554
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=93.21 E-value=9.9 Score=39.16 Aligned_cols=161 Identities=16% Similarity=0.139 Sum_probs=91.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCH-----HHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHH
Q 009506 111 FSTLIKLYGTAGNFDGCLNVYEEMKAI-GVKPNM-----ITYNNLLDTMGR----AKRPWQVKTIYKEMTDNGLSPNWNT 180 (533)
Q Consensus 111 ~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~pd~-----~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~ 180 (533)
+..++...+=.|+-+.+++++.+..+. ++.-.. -.|+..+..++. ..+.+.|.++++.+.++ -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 445566666678888888888776543 222111 234444444433 34566788888888775 366655
Q ss_pred HHHH-HHHHHhcCChHHHHHHHHHHHHcCC---CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHH
Q 009506 181 YASL-LRAYGRARYGEDTLSVYREMKEKGM---QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 256 (533)
Q Consensus 181 ~~~l-l~~~~~~g~~~~a~~~~~~m~~~g~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li 256 (533)
|... -+.+...|++++|++.|++...... ......+--+.-.+.-.+++++|.+.|..+.+.. .....+|.-+.
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s--~WSka~Y~Y~~ 346 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES--KWSKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc--ccHHHHHHHHH
Confidence 5443 3445567888888888886543110 1122334444555666777777777777777654 33444444333
Q ss_pred HH-HHhcCCh-------HHHHHHHHHH
Q 009506 257 TI-CSCRGKV-------SEAEAMFNEM 275 (533)
Q Consensus 257 ~~-~~~~g~~-------~~A~~~~~~m 275 (533)
.+ +...|+. ++|.++|.+.
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 32 3345555 5666666554
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein | Back alignment and domain information |
|---|
Probab=93.02 E-value=0.53 Score=35.30 Aligned_cols=70 Identities=24% Similarity=0.369 Sum_probs=45.4
Q ss_pred cccccChhhHHHHHHHHHHHHHHHHHcCCCCCCceEEEeeeccccccchhHHHHHHHHhhhcCCCCCC---------CCC
Q 009506 431 HLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHD---------SPD 501 (533)
Q Consensus 431 ~l~~~~~g~~~~a~~~~~~~l~~~~~~g~~~p~~~~i~~~~~~~~~~~~~l~~~~~~~L~~~~~~f~~---------~~~ 501 (533)
+++++....|...+..++.... ..+. ..+.|+||.|.|+... .++..+...|.+ +..+.. ...
T Consensus 2 DLHG~~~~eA~~~l~~~l~~~~---~~~~---~~~~II~G~G~hS~~g-~Lk~~V~~~L~~-~~~~~~v~~~~~~~~~~g 73 (83)
T PF01713_consen 2 DLHGLTVEEALRALEEFLDEAR---QRGI---RELRIITGKGNHSKGG-VLKRAVRRWLEE-GYQYEEVLAYRDAEPEDG 73 (83)
T ss_dssp E-TTS-HHHHHHHHHHHHHHHH---HTTH---SEEEEE--STCTCCTS-HHHHHHHHHHHH-THCCTTEEEEEE--CCCT
T ss_pred CCCCCcHHHHHHHHHHHHHHHH---HcCC---CEEEEEeccCCCCCCC-cHHHHHHHHHHh-hhccchhheeeecCCCCC
Confidence 5778888777777766654443 3332 4578999999998764 489999999987 544444 345
Q ss_pred CcceEEE
Q 009506 502 KVGWFLT 508 (533)
Q Consensus 502 ~~g~~~~ 508 (533)
|.|+++.
T Consensus 74 ~~G~~~V 80 (83)
T PF01713_consen 74 NSGATIV 80 (83)
T ss_dssp GGGEEEE
T ss_pred CCeEEEE
Confidence 7888764
|
It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.82 E-value=1.4 Score=41.30 Aligned_cols=77 Identities=14% Similarity=0.198 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCCHHHHH
Q 009506 214 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE-----AGFEPNLFVLT 288 (533)
Q Consensus 214 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~ 288 (533)
.++..++..+...|+.+.+.+.++++.... +-|...|..+|.+|.+.|+...|.+.|+++.+ .|+.|...+..
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d--p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD--PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 455556666666777777777777766654 45666777777777777777777777766543 35555554444
Q ss_pred HHHH
Q 009506 289 SLIQ 292 (533)
Q Consensus 289 ~li~ 292 (533)
...+
T Consensus 232 ~y~~ 235 (280)
T COG3629 232 LYEE 235 (280)
T ss_pred HHHH
Confidence 4333
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=92.79 E-value=5.8 Score=34.14 Aligned_cols=133 Identities=13% Similarity=0.138 Sum_probs=87.5
Q ss_pred hhHHHHHhhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--ChhHHHHHHHHHH
Q 009506 93 KSYDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK--RPWQVKTIYKEMT 170 (533)
Q Consensus 93 ~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g--~~~~a~~~~~~m~ 170 (533)
.+..+.+.+.++.|+...|..+|+.+.+.|++..... +...++-+|.......+-.+.... -..-|++++.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 4556667788999999999999999999999766544 445556677666655554443322 1233555555554
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009506 171 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 241 (533)
Q Consensus 171 ~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 241 (533)
. .+..+++.+...|++-+|.++....... +......++.+-.+.+|...-..+|+-...
T Consensus 90 ~--------~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 90 T--------AYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred h--------hHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 4667788888999999999988775332 223334566676676766555555544443
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.79 E-value=8.6 Score=36.11 Aligned_cols=51 Identities=12% Similarity=0.012 Sum_probs=23.8
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 009506 119 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 170 (533)
Q Consensus 119 ~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~ 170 (533)
...|++.+|..+|+......- -+...--.+..+|...|+.+.|..++..+-
T Consensus 145 ~~~e~~~~a~~~~~~al~~~~-~~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAAP-ENSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred hhccchhhHHHHHHHHHHhCc-ccchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 344555555555555543311 122233344455555555555555555443
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=92.75 E-value=11 Score=37.45 Aligned_cols=272 Identities=15% Similarity=0.187 Sum_probs=142.1
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH--H
Q 009506 118 YGTAGNFDGCLNVYEEMKAIGVKPN------MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY--G 189 (533)
Q Consensus 118 ~~~~g~~~~A~~~~~~m~~~g~~pd------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~--~ 189 (533)
+-+.+++.+|.++|.++-+.. ..+ ...-+.+|++|.. ++.+.....+....+. .| ...|-.|..+. -
T Consensus 16 Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAY 90 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHH
Confidence 347788889998888876541 222 2334567777764 3455555555555543 12 23344444432 3
Q ss_pred hcCChHHHHHHHHHHHHc--CCCc------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CCCCHHHH
Q 009506 190 RARYGEDTLSVYREMKEK--GMQL------------SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN---CQPDSWTF 252 (533)
Q Consensus 190 ~~g~~~~a~~~~~~m~~~--g~~~------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~~p~~~~~ 252 (533)
+.+.+++|.+.+..-.+. +..+ |-..=+..+..+...|++.++..+++++...-. +.-+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 667888888887766654 3222 122234455667777888888777777765432 13567777
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 009506 253 SSMITICSCRGKVSEAEAMFNEMLE---AGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM 329 (533)
Q Consensus 253 ~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 329 (533)
+.++-++++. .|-++.+ ..+.|+ |-.+|-.|.+. ...++.-.-..+.|....+..++...
T Consensus 171 d~~vlmlsrS--------YfLEl~e~~s~dl~pd---yYemilfY~kk------i~~~d~~~Y~k~~peeeL~s~imqhl 233 (549)
T PF07079_consen 171 DRAVLMLSRS--------YFLELKESMSSDLYPD---YYEMILFYLKK------IHAFDQRPYEKFIPEEELFSTIMQHL 233 (549)
T ss_pred HHHHHHHhHH--------HHHHHHHhcccccChH---HHHHHHHHHHH------HHHHhhchHHhhCcHHHHHHHHHHHH
Confidence 7766555542 2323322 122222 22223233221 01111111113445556666666655
Q ss_pred hcCCh---HHHHHHHHHHHh--cCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhcc-------CccchhhHHHHHHHHh
Q 009506 330 TQTPK---EELGKLVECVEK--SNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK-------DVKKAYCNCLIDLCVN 397 (533)
Q Consensus 330 ~~~~~---~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~~-------~~~~~~~~~li~~~~~ 397 (533)
.-... .--.++++...+ .+|+.+.++..|.....+.+ +++..+-+.+.. +.-...+..++....+
T Consensus 234 fi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~~~---e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk 310 (549)
T PF07079_consen 234 FIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMSDP---EQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVK 310 (549)
T ss_pred HhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhcCh---HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 54444 222223333322 46666666666655554422 333333222211 1123377888888899
Q ss_pred cCCHHHHHHHHHHHHhc
Q 009506 398 LNLLENACKLLELGLTL 414 (533)
Q Consensus 398 ~g~~~~A~~l~~~m~~~ 414 (533)
.++..+|-..+..+...
T Consensus 311 ~~~T~~a~q~l~lL~~l 327 (549)
T PF07079_consen 311 QVQTEEAKQYLALLKIL 327 (549)
T ss_pred HHhHHHHHHHHHHHHhc
Confidence 99999988877766544
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=92.51 E-value=5 Score=32.74 Aligned_cols=68 Identities=22% Similarity=0.221 Sum_probs=40.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCC
Q 009506 248 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 316 (533)
Q Consensus 248 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 316 (533)
+.......++...+.|.-+.-.+++.++.+. -.+++...-.+..+|.+.|+..++-+++++.-+.|++
T Consensus 85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 85 LSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp --HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 3344455666677777777777777776542 2466777777777777777777777777777777643
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.45 E-value=2.4 Score=41.44 Aligned_cols=138 Identities=14% Similarity=0.115 Sum_probs=83.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 009506 115 IKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 194 (533)
Q Consensus 115 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 194 (533)
-+.|.+.|++..|..-|++.... |. |.+.-+.++... ... .-..+++.|.-+|.+.+++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~------------l~-~~~~~~~ee~~~-~~~-------~k~~~~lNlA~c~lKl~~~ 273 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF------------LE-YRRSFDEEEQKK-AEA-------LKLACHLNLAACYLKLKEY 273 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH------------hh-ccccCCHHHHHH-HHH-------HHHHHhhHHHHHHHhhhhH
Confidence 35678889999999998886542 00 000111122111 111 1224566777777888888
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHH-HHHHHHHhcCCh-HHHHHHH
Q 009506 195 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS-SMITICSCRGKV-SEAEAMF 272 (533)
Q Consensus 195 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~-~li~~~~~~g~~-~~A~~~~ 272 (533)
..|++.-...++.+.. |+-..---..+|...|+++.|+..|+.+.+. .|+...-. -|+..--+.... +...++|
T Consensus 274 ~~Ai~~c~kvLe~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k~---~P~Nka~~~el~~l~~k~~~~~~kekk~y 349 (397)
T KOG0543|consen 274 KEAIESCNKVLELDPN-NVKALYRRGQALLALGEYDLARDDFQKALKL---EPSNKAARAELIKLKQKIREYEEKEKKMY 349 (397)
T ss_pred HHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888777777766543 6666666677788888888888888888774 45444443 444443344433 3446777
Q ss_pred HHHHH
Q 009506 273 NEMLE 277 (533)
Q Consensus 273 ~~m~~ 277 (533)
..|..
T Consensus 350 ~~mF~ 354 (397)
T KOG0543|consen 350 ANMFA 354 (397)
T ss_pred HHHhh
Confidence 77765
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.17 E-value=5.2 Score=42.73 Aligned_cols=180 Identities=13% Similarity=0.150 Sum_probs=116.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH----HHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 009506 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT----MGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 182 (533)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~----~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 182 (533)
......+-|+.+.+...++-|+.+-+.-. .|..+...+... +.+.|++++|..-|-+-... +.|.
T Consensus 333 ~ek~le~kL~iL~kK~ly~~Ai~LAk~~~-----~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s----- 401 (933)
T KOG2114|consen 333 IEKDLETKLDILFKKNLYKVAINLAKSQH-----LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS----- 401 (933)
T ss_pred eeccHHHHHHHHHHhhhHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----
Confidence 44456677888888888888887765532 344444444444 45789999998888766532 2332
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc
Q 009506 183 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 262 (533)
Q Consensus 183 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 262 (533)
.+|.-|....+...-...++.+.+.|+. +...-..|+.+|.+.++.++-.++.+... .|...-| ....+..+.+.
T Consensus 402 ~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd---~e~al~Ilr~s 476 (933)
T KOG2114|consen 402 EVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFD---VETALEILRKS 476 (933)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccceeee---HHHHHHHHHHh
Confidence 3466666777777778888888888887 66777889999999999988888776654 3321112 34556666666
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 009506 263 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 310 (533)
Q Consensus 263 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 310 (533)
+-.++|..+-.... .+......++ -..+++++|++++..|
T Consensus 477 nyl~~a~~LA~k~~-----~he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 477 NYLDEAELLATKFK-----KHEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred ChHHHHHHHHHHhc-----cCHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 66666666644432 2333333333 3456777777776655
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.17 E-value=2 Score=40.25 Aligned_cols=80 Identities=15% Similarity=0.173 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCcCHHHHHH
Q 009506 144 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE-----KGMQLSVTLYNT 218 (533)
Q Consensus 144 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~~~~~~ 218 (533)
.++..++..+...|+++.+...++++.... +-|...|..+|.+|.+.|+...|+..|+.+.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 367788888888888888888888888764 56788888899999999998888888887765 588888888777
Q ss_pred HHHHHH
Q 009506 219 LLAMCA 224 (533)
Q Consensus 219 li~~~~ 224 (533)
......
T Consensus 233 y~~~~~ 238 (280)
T COG3629 233 YEEILR 238 (280)
T ss_pred HHHHhc
Confidence 776633
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.16 E-value=2.8 Score=40.97 Aligned_cols=97 Identities=14% Similarity=0.064 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH-HH
Q 009506 213 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS-LI 291 (533)
Q Consensus 213 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-li 291 (533)
..+++.|.-+|.+.+++.+|++.-+.....+ ++|....---..+|...|+++.|+..|+.+.+. .|+...... |+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~--~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~ 332 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELD--PNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELI 332 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC--CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHH
Confidence 4567788889999999999999999998876 678888888899999999999999999999884 576555554 44
Q ss_pred HHHHhcCChh-HHHHHHHHhhhC
Q 009506 292 QCYGKAQRTD-DVVRALNRLPEL 313 (533)
Q Consensus 292 ~~~~~~g~~~-~a~~~~~~m~~~ 313 (533)
.+--+..+.. ...++|..|...
T Consensus 333 ~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 333 KLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 4444444443 446788888653
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.15 E-value=18 Score=38.17 Aligned_cols=26 Identities=27% Similarity=0.408 Sum_probs=13.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009506 212 SVTLYNTLLAMCADVGYTDEAFEIFE 237 (533)
Q Consensus 212 ~~~~~~~li~~~~~~g~~~~A~~~~~ 237 (533)
+....-.+..++...|.-++|.+.|-
T Consensus 851 ~s~llp~~a~mf~svGMC~qAV~a~L 876 (1189)
T KOG2041|consen 851 DSELLPVMADMFTSVGMCDQAVEAYL 876 (1189)
T ss_pred ccchHHHHHHHHHhhchHHHHHHHHH
Confidence 34444455555555555555555543
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.81 E-value=6.1 Score=32.17 Aligned_cols=93 Identities=11% Similarity=0.131 Sum_probs=70.3
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcC
Q 009506 116 KLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT---YASLLRAYGRAR 192 (533)
Q Consensus 116 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~---~~~ll~~~~~~g 192 (533)
-+++..|+++.|++.|.+.... .+-....||.-..++--.|+.++|++=+++.++..-.-+... |.---..|...|
T Consensus 51 valaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 3567889999999999998764 234778899999999999999999999998887432223333 333344577789
Q ss_pred ChHHHHHHHHHHHHcCC
Q 009506 193 YGEDTLSVYREMKEKGM 209 (533)
Q Consensus 193 ~~~~a~~~~~~m~~~g~ 209 (533)
+.+.|..=|+..-+.|-
T Consensus 130 ~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGS 146 (175)
T ss_pred chHHHHHhHHHHHHhCC
Confidence 99999888888777663
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=91.80 E-value=0.0063 Score=51.47 Aligned_cols=52 Identities=13% Similarity=0.132 Sum_probs=22.9
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 009506 151 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 202 (533)
Q Consensus 151 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 202 (533)
..+.+.+.+......++.+...+-.-+....+.++..|++.++.+...++++
T Consensus 15 ~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 15 SAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 3333444444444444444444333344445555555555544444444443
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.68 E-value=5.1 Score=38.16 Aligned_cols=153 Identities=7% Similarity=0.013 Sum_probs=109.3
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCcCHHHHHHHHHHHHhcCCHHH
Q 009506 155 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK---GMQLSVTLYNTLLAMCADVGYTDE 231 (533)
Q Consensus 155 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~---g~~~~~~~~~~li~~~~~~g~~~~ 231 (533)
..|++.+|-..++++++. .+.|...+...=++|.-.|+.+.-...++++... +++....+-..+.-++..+|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 467888888888888865 5778888888889999999999998888888764 222223333334455668899999
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 009506 232 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA---GFEPNLFVLTSLIQCYGKAQRTDDVVRALN 308 (533)
Q Consensus 232 A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 308 (533)
|++.-++..+.+ +.|...-.++...+-..|+..++.+...+-.+. +.-.-..-|--..-.+...+.++.|+++|+
T Consensus 194 AEk~A~ralqiN--~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 194 AEKQADRALQIN--RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred HHHHHHhhccCC--CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 999999988876 678888888999999999999999887664321 100011112222233455689999999987
Q ss_pred Hh
Q 009506 309 RL 310 (533)
Q Consensus 309 ~m 310 (533)
.-
T Consensus 272 ~e 273 (491)
T KOG2610|consen 272 RE 273 (491)
T ss_pred HH
Confidence 63
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.16 E-value=2.6 Score=38.98 Aligned_cols=98 Identities=18% Similarity=0.201 Sum_probs=55.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCC-CHHHHHHHH
Q 009506 215 LYNTLLAMCADVGYTDEAFEIFEDMKSSENC-QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA-GFEP-NLFVLTSLI 291 (533)
Q Consensus 215 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p-~~~~~~~li 291 (533)
.|+.-+..| +.|++.+|...|....+.+-- .-....+-.|...+...|++++|..+|..+.+. +-.| -..++--|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 455544443 345566666666666554310 012334556667777777777777777666552 1111 135555666
Q ss_pred HHHHhcCChhHHHHHHHHhhhC
Q 009506 292 QCYGKAQRTDDVVRALNRLPEL 313 (533)
Q Consensus 292 ~~~~~~g~~~~a~~~~~~m~~~ 313 (533)
.+..+.|+.++|..+|+++.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 6666777777777777776554
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=91.01 E-value=19 Score=36.30 Aligned_cols=157 Identities=12% Similarity=0.129 Sum_probs=90.8
Q ss_pred HHH--HHHHHHHHhcC-----ChHHHHHHHHHHHH-cCCCcC-HHHHHHHHHHHH---------hcCCHHHHHHHHHHHH
Q 009506 179 NTY--ASLLRAYGRAR-----YGEDTLSVYREMKE-KGMQLS-VTLYNTLLAMCA---------DVGYTDEAFEIFEDMK 240 (533)
Q Consensus 179 ~~~--~~ll~~~~~~g-----~~~~a~~~~~~m~~-~g~~~~-~~~~~~li~~~~---------~~g~~~~A~~~~~~m~ 240 (533)
..| ..++++..... ..+.|+.+|.+... ..+.|+ ...|..+-.++. ...+..+|.++-++..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 455 55666655522 34567778887772 223443 233333222211 1234566777777777
Q ss_pred hCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCH
Q 009506 241 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN-LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 319 (533)
Q Consensus 241 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 319 (533)
+.+ +.|......+..+....++++.|..+|++.... .|| ..+|...-....-+|+.++|.+.+++..+. .|..
T Consensus 332 eld--~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~ 405 (458)
T PRK11906 332 DIT--TVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRR 405 (458)
T ss_pred hcC--CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--Cchh
Confidence 766 567777777777777777888888888887664 355 334444444445578888888888875543 2332
Q ss_pred H---HHHHHHHHHhcCChHHHHHHH
Q 009506 320 R---FCGCLLNVMTQTPKEELGKLV 341 (533)
Q Consensus 320 ~---~~~~ll~~~~~~~~~~a~~~~ 341 (533)
. .....+..|...+-+++.+++
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (458)
T PRK11906 406 RKAVVIKECVDMYVPNPLKNNIKLY 430 (458)
T ss_pred hHHHHHHHHHHHHcCCchhhhHHHH
Confidence 2 333334455555555555544
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.80 E-value=24 Score=37.24 Aligned_cols=149 Identities=14% Similarity=0.101 Sum_probs=95.5
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHH--HHHH-HHhcCChHHHHHHHHHHHH-------cCCCcCHHHHHHHHHHHHhcC-
Q 009506 159 PWQVKTIYKEMTDNGLSPNWNTYAS--LLRA-YGRARYGEDTLSVYREMKE-------KGMQLSVTLYNTLLAMCADVG- 227 (533)
Q Consensus 159 ~~~a~~~~~~m~~~g~~p~~~~~~~--ll~~-~~~~g~~~~a~~~~~~m~~-------~g~~~~~~~~~~li~~~~~~g- 227 (533)
...+.+.++...+.|. ......-. ...+ +....+.+.|...|+...+ .| +....+-+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~-~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH-SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhcc-hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCC
Confidence 4567888888777762 11222222 2223 4567888999999988866 44 3335566666776643
Q ss_pred ----CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--hcCCh
Q 009506 228 ----YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC-RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG--KAQRT 300 (533)
Q Consensus 228 ----~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~--~~g~~ 300 (533)
+.+.|..++......| .|+...+-..+..... ..+...|.++|......|.. ...-+..++...+ ...+.
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~ 380 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNL 380 (552)
T ss_pred CccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCH
Confidence 6778999999888887 5776666555544444 45678999999998887742 2222222222222 34567
Q ss_pred hHHHHHHHHhhhCC
Q 009506 301 DDVVRALNRLPELG 314 (533)
Q Consensus 301 ~~a~~~~~~m~~~g 314 (533)
..|..++++..+.|
T Consensus 381 ~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 381 ELAFAYYKKAAEKG 394 (552)
T ss_pred HHHHHHHHHHHHcc
Confidence 88888888888887
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=90.38 E-value=22 Score=36.05 Aligned_cols=83 Identities=4% Similarity=0.057 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHH
Q 009506 178 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ-LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 256 (533)
Q Consensus 178 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li 256 (533)
..+-..|..++.+.|+.++|.+.|.+|.+.... -...+...||.++...+.+.++..++.+-.+....+.-...|+..+
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 344455677777889999999999998764322 2455777899999999999999999988765432122355676655
Q ss_pred HHHH
Q 009506 257 TICS 260 (533)
Q Consensus 257 ~~~~ 260 (533)
--+.
T Consensus 339 LkaR 342 (539)
T PF04184_consen 339 LKAR 342 (539)
T ss_pred HHHH
Confidence 4333
|
The molecular function of this protein is uncertain. |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=90.37 E-value=24 Score=37.85 Aligned_cols=43 Identities=19% Similarity=0.276 Sum_probs=29.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 009506 113 TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA 156 (533)
Q Consensus 113 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~ 156 (533)
.+|-.|.|+|++++|.++..+..+. .......+-..+..|...
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 4777788999999999999555432 334445666777777654
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.18 E-value=15 Score=33.83 Aligned_cols=56 Identities=23% Similarity=0.251 Sum_probs=30.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHh
Q 009506 254 SMITICSCRGKVSEAEAMFNEMLEAGFEPN---LFVLTSLIQCYGKAQRTDDVVRALNRL 310 (533)
Q Consensus 254 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m 310 (533)
.+.+.|.+.|.+..|..-+++|.+. .+-+ ...+-.|..+|.+.|..++|...-.-+
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl 230 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVL 230 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 3445566666776666666666664 2111 223444555666666666665544443
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.11 E-value=9.1 Score=31.21 Aligned_cols=53 Identities=11% Similarity=0.027 Sum_probs=24.2
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 009506 153 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 206 (533)
Q Consensus 153 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 206 (533)
++..|+.+.|++.|.+.+.. .+-+...||.-..+|.-.|+.++|++=+++..+
T Consensus 53 laE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 34445555555555444432 123344445444555444555544444444443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=90.03 E-value=1.1 Score=28.66 Aligned_cols=18 Identities=22% Similarity=0.327 Sum_probs=6.5
Q ss_pred HHHhcCChHHHHHHHHHH
Q 009506 187 AYGRARYGEDTLSVYREM 204 (533)
Q Consensus 187 ~~~~~g~~~~a~~~~~~m 204 (533)
.|.+.|++++|+++|++.
T Consensus 10 ~~~~~G~~~~A~~~~~~~ 27 (44)
T PF13428_consen 10 AYRRLGQPDEAERLLRRA 27 (44)
T ss_pred HHHHcCCHHHHHHHHHHH
Confidence 333333333333333333
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=89.90 E-value=6.6 Score=36.39 Aligned_cols=99 Identities=14% Similarity=0.115 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCCHHHHHHH
Q 009506 179 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQ--LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN-CQPDSWTFSSM 255 (533)
Q Consensus 179 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~p~~~~~~~l 255 (533)
..|+.-+..| +.|++..|.+.|...++.... -....+--|...+...|++++|..+|..+.+... .+.-...+--|
T Consensus 143 ~~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 143 KLYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 3577776655 567788999988888876432 1233455577888888999999988888776531 01124566667
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc
Q 009506 256 ITICSCRGKVSEAEAMFNEMLEA 278 (533)
Q Consensus 256 i~~~~~~g~~~~A~~~~~~m~~~ 278 (533)
.....+.|+.++|..+|+++.+.
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH
Confidence 77778888999999999888764
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.80 E-value=31 Score=36.79 Aligned_cols=128 Identities=13% Similarity=0.081 Sum_probs=78.2
Q ss_pred HHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHH
Q 009506 267 EAEAMFNEMLE-AGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECV 344 (533)
Q Consensus 267 ~A~~~~~~m~~-~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~ 344 (533)
+-+++.+.+.. .|..-..-+.+.-+.-+...|+..+|.++-.+.+ -||...|-.=+.+++..++ ++.+++.+..
T Consensus 666 kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAksk 741 (829)
T KOG2280|consen 666 KLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSK 741 (829)
T ss_pred HHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhcc
Confidence 33444444443 2333444455555666667788888887776664 3677777777777877777 6666665544
Q ss_pred HhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhccCccchhhHHHHHHHHhcCCHHHHHHHHHH
Q 009506 345 EKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLEL 410 (533)
Q Consensus 345 ~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 410 (533)
.. -.... -++..+.+.|+. ++|.+++-+....+ -...+|.+.|++.+|.++--+
T Consensus 742 ks-PIGy~----PFVe~c~~~~n~-~EA~KYiprv~~l~------ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 742 KS-PIGYL----PFVEACLKQGNK-DEAKKYIPRVGGLQ------EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred CC-CCCch----hHHHHHHhcccH-HHHhhhhhccCChH------HHHHHHHHhccHHHHHHHHHH
Confidence 31 11122 233444455665 88888877765422 577788888888888776543
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=89.69 E-value=0.84 Score=27.80 Aligned_cols=25 Identities=24% Similarity=0.646 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHH
Q 009506 110 AFSTLIKLYGTAGNFDGCLNVYEEM 134 (533)
Q Consensus 110 ~~~~li~~~~~~g~~~~A~~~~~~m 134 (533)
+|+.|...|.+.|++++|+++|++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3566677777777777777777764
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=89.54 E-value=24 Score=35.54 Aligned_cols=75 Identities=11% Similarity=0.031 Sum_probs=33.5
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009506 162 VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 238 (533)
Q Consensus 162 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 238 (533)
|.++-++..+.+ +-|......+..+..-.++++.|...|++....+.. ...+|....-.+.-.|+.++|.+.+++
T Consensus 323 a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 323 ALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 444444444443 334444444444444445555555555555444222 222333333333334555555555555
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=89.42 E-value=1.5 Score=28.03 Aligned_cols=27 Identities=19% Similarity=0.210 Sum_probs=14.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 009506 216 YNTLLAMCADVGYTDEAFEIFEDMKSS 242 (533)
Q Consensus 216 ~~~li~~~~~~g~~~~A~~~~~~m~~~ 242 (533)
|..+...|...|++++|+++|++..+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 444455555555555555555555543
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.37 E-value=31 Score=36.47 Aligned_cols=182 Identities=18% Similarity=0.130 Sum_probs=117.6
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHH-----HHhcCChhHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHhc
Q 009506 124 FDGCLNVYEEMKAIGVKPNMITYNNLLDT-----MGRAKRPWQVKTIYKEMTD-------NGLSPNWNTYASLLRAYGRA 191 (533)
Q Consensus 124 ~~~A~~~~~~m~~~g~~pd~~~~~~li~~-----~~~~g~~~~a~~~~~~m~~-------~g~~p~~~~~~~ll~~~~~~ 191 (533)
...|.++++.....| +...-..+... ++...+.+.|+..|+.+.+ .| +.....-+-.+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 567888888887765 33332223222 4466789999999999877 55 334566677777764
Q ss_pred C-----ChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH--hcC
Q 009506 192 R-----YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD-VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS--CRG 263 (533)
Q Consensus 192 g-----~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~--~~g 263 (533)
. +.+.|..++...-+.|.. +....-..+..... ..+...|.++|...-..|. ++..-+..++-... -..
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~--~~A~~~la~~y~~G~gv~r 378 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH--ILAIYRLALCYELGLGVER 378 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhCCCcCC
Confidence 3 567799999888888754 54444433333333 3568899999999998884 44444444433333 345
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCC
Q 009506 264 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 316 (533)
Q Consensus 264 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 316 (533)
+...|..++++..+.| .|-..--...+..+.. ++.+.+.-.+..+.+.|..
T Consensus 379 ~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 379 NLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE 429 (552)
T ss_pred CHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh
Confidence 7889999999988877 3333333334444444 7777777777777766544
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.35 E-value=24 Score=34.89 Aligned_cols=187 Identities=11% Similarity=0.062 Sum_probs=108.7
Q ss_pred CCHHHHHHHHH-HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HhcCChHHHHHHHHHHHHcCCCcCH----
Q 009506 141 PNMITYNNLLD-TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY--GRARYGEDTLSVYREMKEKGMQLSV---- 213 (533)
Q Consensus 141 pd~~~~~~li~-~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~--~~~g~~~~a~~~~~~m~~~g~~~~~---- 213 (533)
|...+|-.|-. ++...|+.++|.++=-..++.. ....+..++++. --.++.+.+..-|++-+..+.....
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~ 242 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSA 242 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhH
Confidence 44445544432 3456778888777766665532 112333334332 2356777788778777665432110
Q ss_pred -------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 009506 214 -------TLYNTLLAMCADVGYTDEAFEIFEDMKSSE--NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 284 (533)
Q Consensus 214 -------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 284 (533)
..+..=.+...+.|++.+|.+.+.+..... ..+++...|.....+..+.|+.++|..--++... .|.
T Consensus 243 ~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~----iD~ 318 (486)
T KOG0550|consen 243 SMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK----IDS 318 (486)
T ss_pred hhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh----cCH
Confidence 111222244567889999999998776532 1255667777888888889999999888877765 343
Q ss_pred HH---HHHHHHHHHhcCChhHHHHHHHHhhhCCCCCC-HHHHHHHHHHHhcCCh
Q 009506 285 FV---LTSLIQCYGKAQRTDDVVRALNRLPELGITPD-DRFCGCLLNVMTQTPK 334 (533)
Q Consensus 285 ~~---~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~ 334 (533)
.- |..-..++...++|++|.+-|+...+..-.+. ..++.....++.+..+
T Consensus 319 syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkR 372 (486)
T KOG0550|consen 319 SYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKR 372 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhh
Confidence 32 22223355566888888888888766533322 2244444444444433
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=89.17 E-value=5.7 Score=34.77 Aligned_cols=62 Identities=11% Similarity=0.135 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009506 179 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS--VTLYNTLLAMCADVGYTDEAFEIFEDMK 240 (533)
Q Consensus 179 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~ 240 (533)
..+..+...|.+.|+.+.|.+.|.++.+....+. ...+-.+|......+++..+...+.+..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3455555666666666666666666655433222 2334455555555566665555554443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=89.09 E-value=0.83 Score=27.82 Aligned_cols=26 Identities=23% Similarity=0.088 Sum_probs=22.3
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHH
Q 009506 387 YCNCLIDLCVNLNLLENACKLLELGL 412 (533)
Q Consensus 387 ~~~~li~~~~~~g~~~~A~~l~~~m~ 412 (533)
+|+.|...|.+.|++++|++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47789999999999999999999865
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.05 E-value=18 Score=33.26 Aligned_cols=171 Identities=15% Similarity=0.136 Sum_probs=84.4
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHH---hc-
Q 009506 224 ADVGYTDEAFEIFEDMKSSENCQP-DSWTFSSMITICSCRGKVSEAEAMFNEMLEA-GFEPNLFVLTSLIQCYG---KA- 297 (533)
Q Consensus 224 ~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~---~~- 297 (533)
.+.|++++|.+.|+.+.......| ...+.-.++-++-+.+++++|...+++.... +-.||. -|-.-|.++. ..
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~~YlkgLs~~~~i~ 123 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYAYYLKGLSYFFQID 123 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHHHHHHHHHHhccCC
Confidence 456777777777777765432111 2344455566666777777777777776553 222222 2222233322 11
Q ss_pred ---CChh---HHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHH
Q 009506 298 ---QRTD---DVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKK 370 (533)
Q Consensus 298 ---g~~~---~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 370 (533)
.+.. +|..-|+++++. -||.. - ..|..-+..+ +-.+...--.++..|.+.|.+ .
T Consensus 124 ~~~rDq~~~~~A~~~f~~~i~r--yPnS~-------------Ya~dA~~~i~~~---~d~LA~~Em~IaryY~kr~~~-~ 184 (254)
T COG4105 124 DVTRDQSAARAAFAAFKELVQR--YPNSR-------------YAPDAKARIVKL---NDALAGHEMAIARYYLKRGAY-V 184 (254)
T ss_pred ccccCHHHHHHHHHHHHHHHHH--CCCCc-------------chhhHHHHHHHH---HHHHHHHHHHHHHHHHHhcCh-H
Confidence 1222 222233333221 12211 1 1111111111 111111113456667777776 5
Q ss_pred HHHHHHhhhccCc-----cchhhHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 009506 371 EATELFNSISKDV-----KKAYCNCLIDLCVNLNLLENACKLLELGLTL 414 (533)
Q Consensus 371 ~a~~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 414 (533)
.|..-|+.+.+.. .....-.|..+|...|..++|.+.-+-+...
T Consensus 185 AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 185 AAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 5555556554321 1235667888999999999998877665443
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=87.82 E-value=4.3 Score=31.06 Aligned_cols=50 Identities=18% Similarity=0.278 Sum_probs=34.3
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 009506 158 RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 207 (533)
Q Consensus 158 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 207 (533)
+.-++.+-++.+....+.|++.+..+.+++|.|.+++..|.++|+-.+.+
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K 71 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK 71 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 33455666666666667777777777777777777777777777766643
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=87.74 E-value=26 Score=33.32 Aligned_cols=222 Identities=11% Similarity=0.045 Sum_probs=125.3
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh----hHHHHHHHHHHHCCCCCCHHH
Q 009506 105 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP----WQVKTIYKEMTDNGLSPNWNT 180 (533)
Q Consensus 105 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~----~~a~~~~~~m~~~g~~p~~~~ 180 (533)
.+|..+....+..+.+.|. +++...+..+.. .+|...-...+.+++..|+. .++..++..+... .++..+
T Consensus 34 d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~V 107 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGG-QDVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACV 107 (280)
T ss_pred CCCHHHHHHHHHHHHhcCc-chHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHH
Confidence 4566677777777777764 334444444443 25666666677777777764 3566666666433 366666
Q ss_pred HHHHHHHHHhcCCh-----HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHH
Q 009506 181 YASLLRAYGRARYG-----EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 255 (533)
Q Consensus 181 ~~~ll~~~~~~g~~-----~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~l 255 (533)
-...+.+++..+.- ..+...+..... .++..+-...+.++++.++ +++...+-.+.+ .+|...-...
T Consensus 108 R~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~----d~~~~VR~~A 179 (280)
T PRK09687 108 RASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLK----DPNGDVRNWA 179 (280)
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhc----CCCHHHHHHH
Confidence 66666666655422 122333322222 2255555666777777766 455565555554 3444455555
Q ss_pred HHHHHhcC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh
Q 009506 256 ITICSCRG-KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 334 (533)
Q Consensus 256 i~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 334 (533)
+.++.+.+ +-..+...+..+.. .+|..+-...+.++++.|+. .++..+-+..+.+. .....+.++...|.
T Consensus 180 ~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~~-----~~~~a~~ALg~ig~ 250 (280)
T PRK09687 180 AFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKGT-----VGDLIIEAAGELGD 250 (280)
T ss_pred HHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCCc-----hHHHHHHHHHhcCC
Confidence 55555543 23455555555554 35667777777777777774 44444444444322 23356677777777
Q ss_pred HHHHHHHHHHHhcCC
Q 009506 335 EELGKLVECVEKSNS 349 (533)
Q Consensus 335 ~~a~~~~~~~~~~~~ 349 (533)
.++...+..+.+..+
T Consensus 251 ~~a~p~L~~l~~~~~ 265 (280)
T PRK09687 251 KTLLPVLDTLLYKFD 265 (280)
T ss_pred HhHHHHHHHHHhhCC
Confidence 666666666655444
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.56 E-value=19 Score=31.72 Aligned_cols=192 Identities=15% Similarity=0.037 Sum_probs=90.3
Q ss_pred CChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 009506 157 KRPWQVKTIYKEMTDNGLS-PNWNTYASLLRAYGRARYGEDTLSVYREMKEK-GMQLSVTLYNTLLAMCADVGYTDEAFE 234 (533)
Q Consensus 157 g~~~~a~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~ 234 (533)
+....+...+......... .....+......+...+.+..+...+...... ........+..+...+...+.+..+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3344444444444433211 12445555555555666666665555555431 122244445555555555555666666
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHH-HHHhcCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 009506 235 IFEDMKSSENCQPDSWTFSSMIT-ICSCRGKVSEAEAMFNEMLEAGF--EPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 311 (533)
Q Consensus 235 ~~~~m~~~~~~~p~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 311 (533)
.+........ .+ ......... .+...|+++.|...+.+...... ......+......+...++.+.+...+.+..
T Consensus 117 ~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 117 LLEKALALDP-DP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHcCCC-Cc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 6665554331 11 122222222 55566666666666666533110 0122333333333455566666666666655
Q ss_pred hCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCC
Q 009506 312 ELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSK 350 (533)
Q Consensus 312 ~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~ 350 (533)
..........+..+...+...+. +.+...+.......+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 234 (291)
T COG0457 195 KLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD 234 (291)
T ss_pred hhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc
Confidence 43211123444445555555554 5555555555554444
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=87.26 E-value=57 Score=36.84 Aligned_cols=30 Identities=13% Similarity=0.080 Sum_probs=16.1
Q ss_pred CCCHHHHHHHHHHHHhcC--ChhHHHHHHHHHH
Q 009506 140 KPNMITYNNLLDTMGRAK--RPWQVKTIYKEMT 170 (533)
Q Consensus 140 ~pd~~~~~~li~~~~~~g--~~~~a~~~~~~m~ 170 (533)
.|+ .-.-.+|.+|++.+ ..++++....+..
T Consensus 788 ~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~ 819 (1265)
T KOG1920|consen 788 APD-KFNLFILTSYVKSNPPEIEEALQKIKELQ 819 (1265)
T ss_pred Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 344 33345666666665 4555555555554
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=87.21 E-value=10 Score=33.21 Aligned_cols=94 Identities=16% Similarity=0.089 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCcCH----HH
Q 009506 145 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW--NTYASLLRAYGRARYGEDTLSVYREMKEK---GMQLSV----TL 215 (533)
Q Consensus 145 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~m~~~---g~~~~~----~~ 215 (533)
.+..+..-|.+.|+.+.|++.|.++.+....+.. ..+-.+|+.....+++..+...+.+.... |-..+. .+
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 4555555666666666666666666554333322 33445555555666666665555544332 111111 11
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 009506 216 YNTLLAMCADVGYTDEAFEIFEDMK 240 (533)
Q Consensus 216 ~~~li~~~~~~g~~~~A~~~~~~m~ 240 (533)
|..| .+...+++.+|-+.|-+..
T Consensus 118 ~~gL--~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEGL--ANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHH--HHHHhchHHHHHHHHHccC
Confidence 2211 1233567777777775544
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.17 E-value=51 Score=35.70 Aligned_cols=139 Identities=19% Similarity=0.245 Sum_probs=68.0
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhH
Q 009506 223 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 302 (533)
Q Consensus 223 ~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 302 (533)
+.+.|++++|..-+-+-.. .+.|. .+|.-|.....+..-..+++.+.+.|+ .+...-+.|+.+|.+.++.++
T Consensus 378 Ly~Kgdf~~A~~qYI~tI~--~le~s-----~Vi~kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~k 449 (933)
T KOG2114|consen 378 LYGKGDFDEATDQYIETIG--FLEPS-----EVIKKFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEK 449 (933)
T ss_pred HHhcCCHHHHHHHHHHHcc--cCChH-----HHHHHhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHH
Confidence 3455666666555533321 12222 234444444445555555566666654 344445566667777776666
Q ss_pred HHHHHHHhhhCCCC-CCHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhc
Q 009506 303 VVRALNRLPELGIT-PDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSIS 380 (533)
Q Consensus 303 a~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~ 380 (533)
..++.+..- .|.. .|. ...+..|.+.+- ++|..+...... ...++..++. ..++. ++|+.++..++
T Consensus 450 L~efI~~~~-~g~~~fd~---e~al~Ilr~snyl~~a~~LA~k~~~----he~vl~ille---~~~ny-~eAl~yi~slp 517 (933)
T KOG2114|consen 450 LTEFISKCD-KGEWFFDV---ETALEILRKSNYLDEAELLATKFKK----HEWVLDILLE---DLHNY-EEALRYISSLP 517 (933)
T ss_pred HHHHHhcCC-CcceeeeH---HHHHHHHHHhChHHHHHHHHHHhcc----CHHHHHHHHH---HhcCH-HHHHHHHhcCC
Confidence 666555544 2322 132 234455555555 555544433222 1122222222 22444 77777777776
Q ss_pred c
Q 009506 381 K 381 (533)
Q Consensus 381 ~ 381 (533)
.
T Consensus 518 ~ 518 (933)
T KOG2114|consen 518 I 518 (933)
T ss_pred H
Confidence 4
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=85.51 E-value=20 Score=29.89 Aligned_cols=75 Identities=11% Similarity=0.020 Sum_probs=48.4
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 009506 116 KLYGTAGNFDGCLNVYEEMKAIGV--KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 190 (533)
Q Consensus 116 ~~~~~~g~~~~A~~~~~~m~~~g~--~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 190 (533)
....+.|++++|.+.|+.+..+-. +-....--.|+.+|.+.+++++|...+++.++..-.--..-|...+.+++.
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 334467888888888888876511 112334456778888888888888888888875321112455555665544
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=85.50 E-value=55 Score=36.98 Aligned_cols=17 Identities=18% Similarity=0.245 Sum_probs=9.6
Q ss_pred HhcCChhHHHHHHHHHH
Q 009506 154 GRAKRPWQVKTIYKEMT 170 (533)
Q Consensus 154 ~~~g~~~~a~~~~~~m~ 170 (533)
..+.|+.+-+-+++++.
T Consensus 862 ~SqkDPkEyLP~L~el~ 878 (1265)
T KOG1920|consen 862 KSQKDPKEYLPFLNELK 878 (1265)
T ss_pred HhccChHHHHHHHHHHh
Confidence 34556666665665555
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=85.22 E-value=2.4 Score=25.12 Aligned_cols=28 Identities=21% Similarity=0.414 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 009506 109 NAFSTLIKLYGTAGNFDGCLNVYEEMKA 136 (533)
Q Consensus 109 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 136 (533)
.+|..+...|...|++++|+..|++..+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 4566677777777777777777777665
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.16 E-value=11 Score=35.74 Aligned_cols=102 Identities=16% Similarity=0.233 Sum_probs=51.1
Q ss_pred CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 009506 209 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC--QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 286 (533)
Q Consensus 209 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 286 (533)
......+...++..-....+++.++..+-.++....+ .++ .+-.++++.+. .-+.+++..++..=...|+.||.++
T Consensus 60 ~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~-~~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 60 LPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRN-WTIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcc-ccHHHHHHHHH-ccChHHHHHHHhCcchhccccchhh
Confidence 3334444444444444455566666665555442110 111 11112222222 2244566666555556666666666
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhh
Q 009506 287 LTSLIQCYGKAQRTDDVVRALNRLPE 312 (533)
Q Consensus 287 ~~~li~~~~~~g~~~~a~~~~~~m~~ 312 (533)
+..+|+.+.+.+++.+|.++.-.|+.
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 66666666666666666665555544
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=85.16 E-value=24 Score=30.48 Aligned_cols=124 Identities=9% Similarity=0.080 Sum_probs=59.9
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHH-HHHHH--HHHHhcCCH
Q 009506 154 GRAKRPWQVKTIYKEMTDNGLSPNWNT-YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTL-YNTLL--AMCADVGYT 229 (533)
Q Consensus 154 ~~~g~~~~a~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~-~~~li--~~~~~~g~~ 229 (533)
++.+..++|+.-|..+.+.|..-=+.. ---........|+...|...|+++-.....|-..- ..-|= -.+...|-+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 345556666666666665543211110 11111223445666666666666655433333221 11111 123455666
Q ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 009506 230 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA 278 (533)
Q Consensus 230 ~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 278 (533)
+......+-+...+. +--...-..|.-+-.+.|++.+|.+.|..+...
T Consensus 149 ~dV~srvepLa~d~n-~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 149 DDVSSRVEPLAGDGN-PMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHhhhccCCCC-hhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 666666666655442 223333445555555666666666666665543
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=85.11 E-value=24 Score=34.16 Aligned_cols=44 Identities=9% Similarity=0.190 Sum_probs=22.2
Q ss_pred hcCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChHHHH
Q 009506 155 RAKRPWQVKTIYKEMTDN--GLSPNWNTYASLLRAYGRARYGEDTL 198 (533)
Q Consensus 155 ~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~g~~~~a~ 198 (533)
...+.++++..+.+-+.+ ...-.-.+|..+..+.++.|.+++++
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL 63 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEML 63 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHH
Confidence 455566666666555432 11112245555566666666655553
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=84.97 E-value=2.4 Score=26.31 Aligned_cols=29 Identities=24% Similarity=0.489 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 009506 108 PNAFSTLIKLYGTAGNFDGCLNVYEEMKA 136 (533)
Q Consensus 108 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 136 (533)
..+++.|...|...|++++|+.++++..+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 34667777777777777777777777653
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.86 E-value=4.6 Score=38.10 Aligned_cols=105 Identities=11% Similarity=0.120 Sum_probs=68.8
Q ss_pred hcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 009506 101 NEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI---GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 177 (533)
Q Consensus 101 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 177 (533)
..|......+-..++..-....+++++...+-+++.. ...|+... .+.+..|. .-++++++.++..=++.|+-||
T Consensus 57 ~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlll-ky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 57 ERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLL-KYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred hcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHH-ccChHHHHHHHhCcchhccccc
Confidence 3444445555556666666677788888777766542 11222211 12233222 3356688888888888888899
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 009506 178 WNTYASLLRAYGRARYGEDTLSVYREMKEK 207 (533)
Q Consensus 178 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 207 (533)
.++++.||+.+.+.+++.+|.++.-+|...
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 999999999999998888888877766654
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.99 E-value=66 Score=34.61 Aligned_cols=149 Identities=9% Similarity=0.086 Sum_probs=82.1
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 009506 115 IKLYGTAGNFDGCLNVYEEMKAIGVKP---NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA 191 (533)
Q Consensus 115 i~~~~~~g~~~~A~~~~~~m~~~g~~p---d~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 191 (533)
|+-+.+.+.+++|+++-+.... ..| -...+...|..+...|++++|-...-.|... +..-|---+.-+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 5566778888888887766543 233 3446677788888888888888877777642 344455445555554
Q ss_pred CChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH------------------HHHhCCCCCCCHHHHH
Q 009506 192 RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE------------------DMKSSENCQPDSWTFS 253 (533)
Q Consensus 192 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~------------------~m~~~~~~~p~~~~~~ 253 (533)
++..... .-+.......+...|..+|..+.. .+...-.++.. +..+. .-+...-.
T Consensus 437 ~~l~~Ia---~~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~---Se~~~L~e 509 (846)
T KOG2066|consen 437 DQLTDIA---PYLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQN---SESTALLE 509 (846)
T ss_pred cccchhh---ccCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhh---ccchhHHH
Confidence 4433222 222222222344555555555554 22211111111 11111 11222233
Q ss_pred HHHHHHHhcCChHHHHHHHHHHH
Q 009506 254 SMITICSCRGKVSEAEAMFNEML 276 (533)
Q Consensus 254 ~li~~~~~~g~~~~A~~~~~~m~ 276 (533)
.|+..|...+++..|.+++-..+
T Consensus 510 ~La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 510 VLAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHHHHccChHHHHHHHHhcc
Confidence 57888888888988888876654
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=83.68 E-value=45 Score=32.44 Aligned_cols=225 Identities=11% Similarity=0.046 Sum_probs=121.2
Q ss_pred HcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChhHHHHHH----HHHHHCC-CCCCHHHHHHHHHHHHhcC
Q 009506 120 TAGNFDGCLNVYEEMKAI--GVKPNMITYNNLLDTMGRAKRPWQVKTIY----KEMTDNG-LSPNWNTYASLLRAYGRAR 192 (533)
Q Consensus 120 ~~g~~~~A~~~~~~m~~~--g~~pd~~~~~~li~~~~~~g~~~~a~~~~----~~m~~~g-~~p~~~~~~~ll~~~~~~g 192 (533)
...+.++|+..+.+-... ...--..+|..+..+.++.|.+++++..- +-..+.. -..--..|-.|.+++-+..
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~ 97 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLC 97 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666554432 00111235666667777777776654321 1111110 0011234455555555555
Q ss_pred ChHHHHHHHHHHHH-cCCCc---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC----CCCCHHHHHHHHHHHHhcCC
Q 009506 193 YGEDTLSVYREMKE-KGMQL---SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN----CQPDSWTFSSMITICSCRGK 264 (533)
Q Consensus 193 ~~~~a~~~~~~m~~-~g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----~~p~~~~~~~li~~~~~~g~ 264 (533)
++.+++.+-..-.. .|..+ --...-++-.++.-.+.++++++.|+...+-.. .......|..|-..|.+..|
T Consensus 98 ~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D 177 (518)
T KOG1941|consen 98 EFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKD 177 (518)
T ss_pred HhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHh
Confidence 55555555443332 12222 112333455666667788888888877554211 11234567888888888888
Q ss_pred hHHHHHHHHHHHH----cCCCCCHHHHH-----HHHHHHHhcCChhHHHHHHHHhhh----CCCCCCH-HHHHHHHHHHh
Q 009506 265 VSEAEAMFNEMLE----AGFEPNLFVLT-----SLIQCYGKAQRTDDVVRALNRLPE----LGITPDD-RFCGCLLNVMT 330 (533)
Q Consensus 265 ~~~A~~~~~~m~~----~g~~p~~~~~~-----~li~~~~~~g~~~~a~~~~~~m~~----~g~~p~~-~~~~~ll~~~~ 330 (533)
+++|.-+..+..+ .++.--..-|. .|.-++...|++.+|.+.-++..+ .|-++.. .....+.+.|.
T Consensus 178 ~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR 257 (518)
T KOG1941|consen 178 YEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYR 257 (518)
T ss_pred hhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Confidence 8888777665443 22221122233 334467778888888887777544 3433222 24455666677
Q ss_pred cCCh-HHHHHHHHHH
Q 009506 331 QTPK-EELGKLVECV 344 (533)
Q Consensus 331 ~~~~-~~a~~~~~~~ 344 (533)
..|+ +.+..-++..
T Consensus 258 ~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 258 SRGDLERAFRRYEQA 272 (518)
T ss_pred hcccHhHHHHHHHHH
Confidence 7777 7777666553
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=83.40 E-value=6.7 Score=30.35 Aligned_cols=47 Identities=17% Similarity=0.198 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 009506 161 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 207 (533)
Q Consensus 161 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 207 (533)
+..+-++.+....+.|++.+..+.+++|.|.+++..|.++|+.++.+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 45555555556666677777777777777777777777777766654
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=83.27 E-value=28 Score=29.71 Aligned_cols=18 Identities=28% Similarity=0.407 Sum_probs=8.6
Q ss_pred HhcCChHHHHHHHHHHHH
Q 009506 260 SCRGKVSEAEAMFNEMLE 277 (533)
Q Consensus 260 ~~~g~~~~A~~~~~~m~~ 277 (533)
...|++.+|.++|+++.+
T Consensus 55 i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 55 IVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHhCCHHHHHHHHHHHhc
Confidence 344455555555554433
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.18 E-value=34 Score=30.73 Aligned_cols=181 Identities=12% Similarity=0.025 Sum_probs=97.6
Q ss_pred HcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 009506 120 TAGNFDGCLNVYEEMKAIGVKPN-MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 198 (533)
Q Consensus 120 ~~g~~~~A~~~~~~m~~~g~~pd-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 198 (533)
..|-+.-|+-=|.+... +.|+ ..+||.|.--+...|+++.|.+.|+...+..-.-+-...|.-|..| -.|++.-|.
T Consensus 77 SlGL~~LAR~DftQaLa--i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y-Y~gR~~LAq 153 (297)
T COG4785 77 SLGLRALARNDFSQALA--IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY-YGGRYKLAQ 153 (297)
T ss_pred hhhHHHHHhhhhhhhhh--cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee-ecCchHhhH
Confidence 34444555555555444 3454 3578888888889999999999999988765222223333333333 357888887
Q ss_pred HHHHHHHHcCC-CcCHHHHHHHHHHHHhcCCHHHHHHHH-HHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009506 199 SVYREMKEKGM-QLSVTLYNTLLAMCADVGYTDEAFEIF-EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 276 (533)
Q Consensus 199 ~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~-~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 276 (533)
+=|...-+.+. .|-...|--++ -..-+..+|..-+ ++.. ..|..-|...|-.|-- |++. ...+++++.
T Consensus 154 ~d~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~-----~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~ 223 (297)
T COG4785 154 DDLLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAE-----KSDKEQWGWNIVEFYL-GKIS-EETLMERLK 223 (297)
T ss_pred HHHHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHH-----hccHhhhhHHHHHHHH-hhcc-HHHHHHHHH
Confidence 66666555432 22223333222 2234555665444 3333 2344444444333321 1111 122333332
Q ss_pred HcCCCCC-------HHHHHHHHHHHHhcCChhHHHHHHHHhhhCC
Q 009506 277 EAGFEPN-------LFVLTSLIQCYGKAQRTDDVVRALNRLPELG 314 (533)
Q Consensus 277 ~~g~~p~-------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 314 (533)
.. -.-+ ..||--|..-|...|+.++|..+|+-.+..+
T Consensus 224 a~-a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 224 AD-ATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred hh-ccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 21 1111 3467777777888888888888888776543
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=83.10 E-value=3.3 Score=24.34 Aligned_cols=28 Identities=21% Similarity=0.395 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 009506 109 NAFSTLIKLYGTAGNFDGCLNVYEEMKA 136 (533)
Q Consensus 109 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 136 (533)
..|..+...|.+.|++++|++.|++..+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3456666777777777777777777665
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=83.09 E-value=26 Score=29.24 Aligned_cols=54 Identities=15% Similarity=0.171 Sum_probs=26.7
Q ss_pred HhcCCHHHHHHHHHHHHhCCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 009506 224 ADVGYTDEAFEIFEDMKSSENC-QPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 277 (533)
Q Consensus 224 ~~~g~~~~A~~~~~~m~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 277 (533)
.+.|++++|.+.|+.+....-. +-....--.|+.+|.+.+++++|...+++..+
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir 75 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR 75 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3445555555555555544210 01233344455555555555555555555554
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=82.66 E-value=44 Score=31.55 Aligned_cols=115 Identities=10% Similarity=0.114 Sum_probs=54.0
Q ss_pred hhHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHh-cC-ChHHHHHHHHHHHH-cCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 009506 159 PWQVKTIYKEMTD-NGLSPNWNTYASLLRAYGR-AR-YGEDTLSVYREMKE-KGMQLSVTLYNTLLAMCADVGYTDEAFE 234 (533)
Q Consensus 159 ~~~a~~~~~~m~~-~g~~p~~~~~~~ll~~~~~-~g-~~~~a~~~~~~m~~-~g~~~~~~~~~~li~~~~~~g~~~~A~~ 234 (533)
+.+|+++|+.... ..+--|..+...|++.... .+ ....-.++.+-+.. .|-.++..+...+|..+++.+++.+-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 3445555542221 2234455566666655544 11 11111222222221 2334455555556666666666666666
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 009506 235 IFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 273 (533)
Q Consensus 235 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 273 (533)
+++.........-|..-|..+|+.....|+..-..++.+
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 655544431113455556666666666666554444443
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.34 E-value=19 Score=37.27 Aligned_cols=148 Identities=20% Similarity=0.194 Sum_probs=92.8
Q ss_pred cCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 009506 191 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 270 (533)
Q Consensus 191 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 270 (533)
.|+++.|..++..+. ...-+.+...+.+.|..++|+++-- .| ..-| ....+.|+++.|.+
T Consensus 599 rrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~s~--------D~-d~rF----elal~lgrl~iA~~ 658 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALELST--------DP-DQRF----ELALKLGRLDIAFD 658 (794)
T ss_pred hccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhcCC--------Ch-hhhh----hhhhhcCcHHHHHH
Confidence 466666655554433 2344566777778888888887631 11 1222 23457788999988
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCC
Q 009506 271 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNS 349 (533)
Q Consensus 271 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~ 349 (533)
+..+. -+..-|..|-++..+.|++..|.+.|.+..+. ..|+-++...|+ +-..++....++.+.
T Consensus 659 la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~---------~~LlLl~t~~g~~~~l~~la~~~~~~g~ 723 (794)
T KOG0276|consen 659 LAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARDL---------GSLLLLYTSSGNAEGLAVLASLAKKQGK 723 (794)
T ss_pred HHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcch---------hhhhhhhhhcCChhHHHHHHHHHHhhcc
Confidence 87664 46788999999999999999999999887653 457777777777 334444444444444
Q ss_pred ChhHHHHHHHHhhhhhccHHHHHHHHHhhh
Q 009506 350 KLGYVVKLLLEEQDIEGDFKKEATELFNSI 379 (533)
Q Consensus 350 ~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~ 379 (533)
....++..++ .|+. +++.+++.+-
T Consensus 724 ~N~AF~~~~l-----~g~~-~~C~~lLi~t 747 (794)
T KOG0276|consen 724 NNLAFLAYFL-----SGDY-EECLELLIST 747 (794)
T ss_pred cchHHHHHHH-----cCCH-HHHHHHHHhc
Confidence 4444433332 2443 5555554443
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=82.18 E-value=10 Score=29.12 Aligned_cols=48 Identities=15% Similarity=0.184 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 009506 265 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 312 (533)
Q Consensus 265 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 312 (533)
.-++.+-++.+....+.|++....+-+++|.+.+++..|.++|+-++.
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 334555555555566667777777777777777777777777766653
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.36 E-value=17 Score=37.54 Aligned_cols=149 Identities=9% Similarity=0.020 Sum_probs=91.6
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 009506 121 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 200 (533)
Q Consensus 121 ~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~ 200 (533)
.|+++.|..++..+. ...-+.+..-+-+.|..++|+++- +|..- -.....+.|+++.|.++
T Consensus 599 rrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~s---------~D~d~---rFelal~lgrl~iA~~l 659 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALELS---------TDPDQ---RFELALKLGRLDIAFDL 659 (794)
T ss_pred hccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhcC---------CChhh---hhhhhhhcCcHHHHHHH
Confidence 456666665554432 223455666666666666665432 22221 12334466788888777
Q ss_pred HHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 009506 201 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 280 (533)
Q Consensus 201 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 280 (533)
..+.. +..-|..|.++....|++..|.+.|..... |..|+-.+...|+-+....+-....+.|.
T Consensus 660 a~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d----------~~~LlLl~t~~g~~~~l~~la~~~~~~g~ 723 (794)
T KOG0276|consen 660 AVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD----------LGSLLLLYTSSGNAEGLAVLASLAKKQGK 723 (794)
T ss_pred HHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc----------hhhhhhhhhhcCChhHHHHHHHHHHhhcc
Confidence 65542 556788888888888888888888876654 44567777777777665555555555552
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 009506 281 EPNLFVLTSLIQCYGKAQRTDDVVRALNRL 310 (533)
Q Consensus 281 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 310 (533)
.|.-.-+|...|+++++.+++..-
T Consensus 724 ------~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 724 ------NNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred ------cchHHHHHHHcCCHHHHHHHHHhc
Confidence 223334666778888888776654
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=80.77 E-value=2.4 Score=25.42 Aligned_cols=21 Identities=14% Similarity=0.336 Sum_probs=10.1
Q ss_pred CHHHHHHHHHHHHhcCChHHH
Q 009506 248 DSWTFSSMITICSCRGKVSEA 268 (533)
Q Consensus 248 ~~~~~~~li~~~~~~g~~~~A 268 (533)
|...|+.+...|...|++++|
T Consensus 12 n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhh
Confidence 444444444444444444444
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=80.33 E-value=0.56 Score=39.40 Aligned_cols=83 Identities=13% Similarity=0.089 Sum_probs=55.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 009506 114 LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY 193 (533)
Q Consensus 114 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 193 (533)
+|+.+.+.+....+..+++.+...+..-+....+.++..|++.++.++..++++. .+..-...+++.|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcch
Confidence 5667777788888888888888766556788888888888888877777777761 111233455666666666
Q ss_pred hHHHHHHHHH
Q 009506 194 GEDTLSVYRE 203 (533)
Q Consensus 194 ~~~a~~~~~~ 203 (533)
++++.-++.+
T Consensus 86 ~~~a~~Ly~~ 95 (143)
T PF00637_consen 86 YEEAVYLYSK 95 (143)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 6666555544
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.30 E-value=89 Score=33.55 Aligned_cols=300 Identities=13% Similarity=0.070 Sum_probs=153.5
Q ss_pred HHhhcCCCCCHHHHH-----HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh--hHHHHHHHHHH
Q 009506 98 RARNEKWRIDPNAFS-----TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP--WQVKTIYKEMT 170 (533)
Q Consensus 98 ~~~~~g~~~~~~~~~-----~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~--~~a~~~~~~m~ 170 (533)
++.+-|+..+..-|. .+|+-+...+.|..|+++-..+...-..- ..+|.....-+.+..+. +++++..++=.
T Consensus 422 r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kl 500 (829)
T KOG2280|consen 422 RDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKL 500 (829)
T ss_pred cccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHh
Confidence 445667777766664 45777888889999999887775421111 45566666666655322 23444443333
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC----cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--
Q 009506 171 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ----LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN-- 244 (533)
Q Consensus 171 ~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-- 244 (533)
.... .....|..+.+-...+|+.+.|..+++.=...+-. .+..-+...+.-+.+.|+.+-...++-.+..+-.
T Consensus 501 s~~~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s 579 (829)
T KOG2280|consen 501 SAKL-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRS 579 (829)
T ss_pred cccC-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Confidence 3222 34456777777777889999888887642222111 1222344555566667777766666655544210
Q ss_pred -------CCC-CHHHHHHHHH---------HHHhcCChHHHHHHHH--HHH----HcCCCCCHHHHHHHHHHHHhcCCh-
Q 009506 245 -------CQP-DSWTFSSMIT---------ICSCRGKVSEAEAMFN--EML----EAGFEPNLFVLTSLIQCYGKAQRT- 300 (533)
Q Consensus 245 -------~~p-~~~~~~~li~---------~~~~~g~~~~A~~~~~--~m~----~~g~~p~~~~~~~li~~~~~~g~~- 300 (533)
..| ....|.-+++ .|- .++-..+...|. ... ..|..|+. .....+|.+....
T Consensus 580 ~l~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~-q~dn~~~~a~~~~q~~~~~~~~~~r~~~l---k~~a~~~a~sk~~s 655 (829)
T KOG2280|consen 580 SLFMTLRNQPLALSLYRQFMRHQDRATLYDFYN-QDDNHQALASFHLQASYAAETIEGRIPAL---KTAANAFAKSKEKS 655 (829)
T ss_pred HHHHHHHhchhhhHHHHHHHHhhchhhhhhhhh-cccchhhhhhhhhhhhhhhhhhcccchhH---HHHHHHHhhhhhhh
Confidence 001 1111111111 111 111111111111 100 01222332 2233334333321
Q ss_pred --h-------HHHHHHHHhh-hCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHH
Q 009506 301 --D-------DVVRALNRLP-ELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFK 369 (533)
Q Consensus 301 --~-------~a~~~~~~m~-~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 369 (533)
+ +-+++.+.+. +.|......+.+--+.-+...|+ .+|.++-...+- ..-.++..-+.+++..++|
T Consensus 656 ~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fki---pdKr~~wLk~~aLa~~~kw- 731 (829)
T KOG2280|consen 656 FEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKI---PDKRLWWLKLTALADIKKW- 731 (829)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCC---cchhhHHHHHHHHHhhhhH-
Confidence 1 1122222222 22444444455555666666676 777776554432 2223334445555666666
Q ss_pred HHHHHHHhhhccCccchhhHHHHHHHHhcCCHHHHHHHHHH
Q 009506 370 KEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLEL 410 (533)
Q Consensus 370 ~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 410 (533)
++.+++-++.. .+.-|.-+..+|.+.|+.+||.+.+.+
T Consensus 732 eeLekfAkskk---sPIGy~PFVe~c~~~~n~~EA~KYipr 769 (829)
T KOG2280|consen 732 EELEKFAKSKK---SPIGYLPFVEACLKQGNKDEAKKYIPR 769 (829)
T ss_pred HHHHHHHhccC---CCCCchhHHHHHHhcccHHHHhhhhhc
Confidence 55544444433 367888899999999999999998875
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 79.9 bits (195), Expect = 8e-16
Identities = 29/262 (11%), Positives = 67/262 (25%), Gaps = 9/262 (3%)
Query: 30 DDSLSFYSKTSLQKRSVSLQETQSSNPTKHSQNPQYPHGKTGSSPKSYIWVNPKSPRASK 89
L ++ K + + +K + + A
Sbjct: 45 KAKLQMPFQSGEFKALTRRLQVEPRLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPG 104
Query: 90 LKEKSYDT----RARNEKWRIDPNAFSTLIKLYGTAGNFD---GCLNVYEEMKAIGVKPN 142
+ + + K L V+ +
Sbjct: 105 KLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLT 164
Query: 143 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA-RYGEDTLSVY 201
+ YN ++ R ++ + + D GL+P+ +YA+ L+ GR +
Sbjct: 165 LDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCL 224
Query: 202 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 261
+M ++G++L LL+ D +A + S P S ++
Sbjct: 225 EQMSQEGLKLQALFTAVLLSEE-DRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYA 283
Query: 262 RGKVSEAEAMFNEMLEAGFEPN 283
+ + +
Sbjct: 284 KDGRVSYPKLHLPLKTLQCLFE 305
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 77.9 bits (190), Expect = 3e-15
Identities = 36/273 (13%), Positives = 82/273 (30%), Gaps = 9/273 (3%)
Query: 167 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 226
SP A LL+ + + + + + C
Sbjct: 81 DCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLT 140
Query: 227 GYTDEAFEIFEDMKS--SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 284
A + + +++++ + +G E + + +AG P+L
Sbjct: 141 DQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDL 200
Query: 285 FVLTSLIQCYGKA-QRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVEC 343
+ +QC G+ Q + R L ++ + G+ F LL+ + + K V
Sbjct: 201 LSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEE---DRATVLKAVHK 257
Query: 344 VEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNL--- 400
V+ + S + + + + + K+ + + +K C L + L
Sbjct: 258 VKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVC 317
Query: 401 LENACKLLELGLTLEVYTDIQSRSPTQWSLHLK 433
+ + K ++ QW L
Sbjct: 318 VVSVEKPTLPSKEVKHARKTLKTLRDQWEKALC 350
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 64.5 bits (155), Expect = 6e-11
Identities = 23/252 (9%), Positives = 67/252 (26%), Gaps = 2/252 (0%)
Query: 41 LQKRSVSLQETQSSNPTKHSQNPQYPHGKTGSSPKSYIWVNPKSPRASKLKEKSYDTRAR 100
L+K + Q K Q K + A L++ +
Sbjct: 30 LEKDKRTQQMRMQRLKAKLQMPFQSGEFKALTRRLQVEPRLLSKQMAGCLEDCTRQAPES 89
Query: 101 NEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 160
+ ++ KL + + + G + ++ + +
Sbjct: 90 PWEEQLARLLQEAPGKLSLDVEQAP--SGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAH 147
Query: 161 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 220
+ ++ + Y +++ + R ++ + V +K+ G+ + Y L
Sbjct: 148 HLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207
Query: 221 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 280
E + S E + + + +++ + +
Sbjct: 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQ 267
Query: 281 EPNLFVLTSLIQ 292
P + L++
Sbjct: 268 LPPPVNTSKLLR 279
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 69.1 bits (168), Expect = 2e-12
Identities = 73/455 (16%), Positives = 142/455 (31%), Gaps = 133/455 (29%)
Query: 132 EEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA 191
EE+ I + + ++ L +K+ + + ++ + L N+ S ++ R
Sbjct: 49 EEIDHIIMSKDAVSGTLRLFWTLLSKQ----EEMVQKFVEEVLRINYKFLMSPIKTEQRQ 104
Query: 192 RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS-ENCQPDSW 250
+ Y E +++ LYN Y + + ++ + +P
Sbjct: 105 PSMMTRM--YIEQRDR-------LYNDNQVF---AKYNVSRLQPYLKLRQALLELRPAKN 152
Query: 251 TFSSMITICS---CRGK-VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 306
+ I GK + + ++ + +F L + V+
Sbjct: 153 -----VLIDGVLGS-GKTWVALDVCLSYKVQCKMDFKIFWLN-----LKNCNSPETVLEM 201
Query: 307 LNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEG 366
L +L ++ S S +KL +
Sbjct: 202 LQKL-------------LYQ--------------IDPNWTSRSDHSSNIKLRIH------ 228
Query: 367 DFKKEATELFNSISKDVKKAYCNCLI---DLCVNLNLLE---NACKLLELGLT---LEVY 417
+ E L S K Y NCL+ ++ N +CK+L LT +V
Sbjct: 229 SIQAELRRLLKS------KPYENCLLVLLNVQ-NAKAWNAFNLSCKIL---LTTRFKQVT 278
Query: 418 TDIQSRSPTQWSL--HLKSLSLGAALTALHIWIN----DLSKALESGEEFPPLL------ 465
+ + + T SL H +L+ + L +++ DL + + + P
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN---PRRLSIIAE 335
Query: 466 ----GINT-GHGKHKYSDKGLASVFESHLKELNAP-----------FHDS---PDKV--- 503
G+ T + KH DK L ++ ES L L F S P +
Sbjct: 336 SIRDGLATWDNWKHVNCDK-LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSL 394
Query: 504 GWF---------LTTEAAAKSWLESR--SSLVSVP 527
WF + + S +E + S +S+P
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP 429
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 44.0 bits (103), Expect = 7e-05
Identities = 28/235 (11%), Positives = 74/235 (31%), Gaps = 13/235 (5%)
Query: 141 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL-RAYGRARYGEDTLS 199
P + + + R + + T+ + Y + + L
Sbjct: 63 PELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALR 122
Query: 200 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 259
+ ++ LL + D A + + M+ + + ++ +++
Sbjct: 123 TLHQGDS--LECMAMTVQILLKL----DRLDLARKELKKMQDQDEDATLTQLATAWVSLA 176
Query: 260 SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT-PD 318
+ K+ +A +F EM + P L +L C+ R + L + P+
Sbjct: 177 AGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPE 235
Query: 319 DRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEAT 373
+L+ P E + + ++ ++ ++ + + E DF +
Sbjct: 236 TLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEY----RAKENDFDRLVL 286
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 533 | |||
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.96 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.95 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.9 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.89 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.87 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.83 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.82 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.81 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.8 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.79 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.79 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.78 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.73 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.73 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.72 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.72 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.71 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.7 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.7 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.7 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.7 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.69 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.67 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.66 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.62 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.6 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.59 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.57 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.56 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.55 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.55 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.54 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.54 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.53 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.52 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.52 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.51 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.51 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.5 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.49 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.49 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.48 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.48 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.47 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.47 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.46 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.45 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.42 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.4 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.37 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.36 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.35 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.33 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.33 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.33 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.32 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.32 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.32 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.32 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.31 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.3 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.29 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.28 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.26 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.26 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.26 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.25 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.24 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.21 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.16 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.16 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.15 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.14 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.13 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.13 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.11 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.06 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.04 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.03 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.01 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.99 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.96 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.93 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.92 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.91 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 98.89 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 98.84 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.79 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.78 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.76 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.76 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.74 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.72 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.72 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.69 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.69 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.68 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.68 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.67 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.67 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.67 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 98.67 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.66 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.65 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.64 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.63 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.62 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.57 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.57 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.55 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.55 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.55 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.55 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 98.54 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.51 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.5 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.47 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.47 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.47 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.46 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.46 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.44 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.43 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.42 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.4 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.39 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.39 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.37 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.36 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.33 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.32 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.31 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.31 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.3 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.3 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.3 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.28 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.27 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.27 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.26 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.26 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.26 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.19 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.17 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.16 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.14 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.12 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.11 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.1 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.09 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.09 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.08 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.07 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.07 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.06 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.06 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.05 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.05 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.04 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.04 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.01 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.0 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.0 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.98 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 97.97 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.96 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.95 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.89 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 97.88 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.85 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.85 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.84 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.84 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.78 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.77 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.73 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.73 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.72 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.72 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.71 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.7 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.67 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.64 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.62 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.57 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.57 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.51 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.49 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.44 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.43 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.39 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.37 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.34 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.34 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.34 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.33 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.32 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.24 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.18 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.13 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.13 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 96.98 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.84 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 96.8 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.78 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 96.71 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.7 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.2 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.13 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 95.99 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 95.91 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 95.9 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 95.84 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 95.78 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.6 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 95.53 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 95.53 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.04 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 94.77 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 94.63 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 94.54 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 93.89 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 93.78 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 93.75 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 93.74 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 93.61 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 93.45 | |
| 3fau_A | 82 | NEDD4-binding protein 2; SMR, small-MUTS related d | 93.22 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 92.28 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 91.7 | |
| 2d9i_A | 96 | NEDD4-binding protein 2; SMR domain, N4BP2, BCL-3 | 91.47 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 89.87 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 89.65 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 89.02 | |
| 2vkc_A | 135 | NEDD4-binding protein 2; human BCL3 binding protei | 88.91 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 88.77 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 88.64 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 87.98 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 87.25 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 86.91 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 85.87 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 85.44 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 85.03 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 83.92 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 83.41 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 81.87 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 81.17 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 80.97 |
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-33 Score=285.97 Aligned_cols=205 Identities=17% Similarity=0.229 Sum_probs=181.1
Q ss_pred HhhHHHHHhhcCCCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---------hhH
Q 009506 92 EKSYDTRARNEKWRIDPN-AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR---------PWQ 161 (533)
Q Consensus 92 ~~~l~~~~~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~---------~~~ 161 (533)
+..+..++.+.+....+. .++.+|++|++.|++++|+++|++|.+.|+.||..|||+||.+|++.+. +++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 345556777777766554 5899999999999999999999999999999999999999999988765 578
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009506 162 VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 241 (533)
Q Consensus 162 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 241 (533)
|.++|++|.+.|+.||..|||+||++|++.|++++|.++|++|.+.|+.||..+||+||.+|++.|++++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 009506 242 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 297 (533)
Q Consensus 242 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 297 (533)
.|. .||..||++||.+|++.|++++|.++|++|.+.|..|+..||+.|+..|+..
T Consensus 169 ~G~-~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 169 SEV-VPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TTC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred cCC-CCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 996 9999999999999999999999999999999999999999999999998764
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-32 Score=281.92 Aligned_cols=207 Identities=15% Similarity=0.191 Sum_probs=182.9
Q ss_pred HHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---------h
Q 009506 125 DGCLNVYEEMKAIGVKPNM-ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY---------G 194 (533)
Q Consensus 125 ~~A~~~~~~m~~~g~~pd~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~---------~ 194 (533)
..+..+.+++.+.++.... ..++.+|++|++.|++++|+++|++|.+.|+.||..|||+||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3455666777777766544 46899999999999999999999999999999999999999999998765 6
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 009506 195 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 274 (533)
Q Consensus 195 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 274 (533)
++|.++|++|.+.|+.||..|||+||.+|++.|++++|+++|++|.+.|. .||..||++||.+|++.|++++|.++|++
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~-~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~ 165 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGI-QPRLRSYGPALFGFCRKGDADKAYEVDAH 165 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCccceehHHHHHHHHCCCHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999996 99999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcC
Q 009506 275 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT 332 (533)
Q Consensus 275 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 332 (533)
|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+.|+..||+.|+..+...
T Consensus 166 M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 166 MVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999998754
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-26 Score=244.90 Aligned_cols=351 Identities=9% Similarity=-0.020 Sum_probs=250.5
Q ss_pred hHHhhHHHHHhhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 009506 90 LKEKSYDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 169 (533)
Q Consensus 90 ~~~~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m 169 (533)
..+..++.++.. ..||..++..++.+|.+.|++++|+.+|+++.. ..+|..+++.++.+|.+.|++++|+++|+++
T Consensus 101 ~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 176 (597)
T 2xpi_A 101 KCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL--YNRSSACRYLAAFCLVKLYDWQGALNLLGET 176 (597)
T ss_dssp HHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG--GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSS
T ss_pred hHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc--cccchhHHHHHHHHHHHHhhHHHHHHHHhcc
Confidence 356667777663 456777777888888888888888888877754 2567777777777777777777777777743
Q ss_pred HH-C--------------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-------------------------
Q 009506 170 TD-N--------------GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM------------------------- 209 (533)
Q Consensus 170 ~~-~--------------g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~------------------------- 209 (533)
.. . |.+.+..+|+.++.+|.+.|++++|.++|++|.+.+.
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~ 256 (597)
T 2xpi_A 177 NPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVL 256 (597)
T ss_dssp CTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred CCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHH
Confidence 22 1 2334577777777777777777777777777754332
Q ss_pred ---------------------------------------------CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 009506 210 ---------------------------------------------QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 244 (533)
Q Consensus 210 ---------------------------------------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 244 (533)
.++..+|+.++.+|.+.|++++|+++|+++.+.+
T Consensus 257 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 335 (597)
T 2xpi_A 257 KLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID- 335 (597)
T ss_dssp HSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred hcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-
Confidence 2678889999999999999999999998888765
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHH
Q 009506 245 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 324 (533)
Q Consensus 245 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 324 (533)
+.+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+.. ..+..+|..
T Consensus 336 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~ 412 (597)
T 2xpi_A 336 -PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIG 412 (597)
T ss_dssp -TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred -cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 4467778888888888888888888888877543 3467777788888888888888888888876642 224567777
Q ss_pred HHHHHhcCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhcc--CccchhhHHHHHHHHhcCCH
Q 009506 325 LLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK--DVKKAYCNCLIDLCVNLNLL 401 (533)
Q Consensus 325 ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~g~~ 401 (533)
++.++.+.|+ ++|.++++.+.+..|+.......++..|.+.|+. ++|.++|+++.. ..+..+|+.++.+|.+.|++
T Consensus 413 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 491 (597)
T 2xpi_A 413 FAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNI-LLANEYLQSSYALFQYDPLLLNELGVVAFNKSDM 491 (597)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCH
Confidence 8888888777 8888888887777777666667777777777776 778888877643 23556778888888888888
Q ss_pred HHHHHHHHHHHhc----cccCCccccCccceeecccccCh-hhHHHHHHHHHHHHH
Q 009506 402 ENACKLLELGLTL----EVYTDIQSRSPTQWSLHLKSLSL-GAALTALHIWINDLS 452 (533)
Q Consensus 402 ~~A~~l~~~m~~~----g~~~~~~~~~~~~~~~~l~~~~~-g~~~~a~~~~~~~l~ 452 (533)
++|.++|++|.+. +..|+. ....|..+...+.. |...+|...+.+.++
T Consensus 492 ~~A~~~~~~~~~~~~~~~~~p~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 544 (597)
T 2xpi_A 492 QTAINHFQNALLLVKKTQSNEKP---WAATWANLGHAYRKLKMYDAAIDALNQGLL 544 (597)
T ss_dssp HHHHHHHHHHHHHHHHSCCCSGG---GHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhccccchhh---HHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 8888888877665 333431 12235555555544 777777766665554
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-26 Score=245.43 Aligned_cols=302 Identities=11% Similarity=0.001 Sum_probs=172.7
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009506 106 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 185 (533)
Q Consensus 106 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 185 (533)
+++..|+.++..|.+.|++++|+.+|++|.. ..||..+++.++.+|.+.|++++|+.+|+++... +++..+++.++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 157 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAA 157 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHH
Confidence 4555566666666666666666666666653 2355566666666666666666666666655432 45566666666
Q ss_pred HHHHhcCChHHHHHHHHHHHHc---------------CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC------
Q 009506 186 RAYGRARYGEDTLSVYREMKEK---------------GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN------ 244 (533)
Q Consensus 186 ~~~~~~g~~~~a~~~~~~m~~~---------------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~------ 244 (533)
.+|.+.|++++|.++|+++... |...+..+|+.++.+|.+.|++++|+++|++|.+.+.
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 237 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAF 237 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHH
Confidence 6666666666666666532111 2233456666666666666666666666655543210
Q ss_pred ---------------------------------------------------------------CCCCHHHHHHHHHHHHh
Q 009506 245 ---------------------------------------------------------------CQPDSWTFSSMITICSC 261 (533)
Q Consensus 245 ---------------------------------------------------------------~~p~~~~~~~li~~~~~ 261 (533)
.+++..+|+.++.+|.+
T Consensus 238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~ 317 (597)
T 2xpi_A 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFV 317 (597)
T ss_dssp HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Confidence 01455566666666666
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHH
Q 009506 262 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKL 340 (533)
Q Consensus 262 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~ 340 (533)
.|++++|.++|+++.+.+ +.+..+++.++.+|.+.|++++|..+|+++.+.. ..+..++..+...|.+.|+ ++|.++
T Consensus 318 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 395 (597)
T 2xpi_A 318 RSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRY 395 (597)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHH
Confidence 666666666666665543 2245556666666666666666666666665432 2244555666666666666 666666
Q ss_pred HHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhcc--CccchhhHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 009506 341 VECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK--DVKKAYCNCLIDLCVNLNLLENACKLLELGLTL 414 (533)
Q Consensus 341 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 414 (533)
|+.+.+..|........++..|.+.|+. ++|.++|+++.. ..+..+|+.++.+|.+.|++++|.++|++|.+.
T Consensus 396 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (597)
T 2xpi_A 396 FSKSSTMDPQFGPAWIGFAHSFAIEGEH-DQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL 470 (597)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6666655555555555566666666655 666666655432 224455666666666666666666666666543
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=2.9e-20 Score=185.75 Aligned_cols=301 Identities=14% Similarity=0.062 Sum_probs=204.6
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 009506 105 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 184 (533)
Q Consensus 105 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 184 (533)
+.++..|..+...|.+.|++++|++.|+++.+.. +.+..+|..+..++.+.|++++|++.|+++.+.. +-+...+..+
T Consensus 64 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 141 (388)
T 1w3b_A 64 PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDL 141 (388)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHH
T ss_pred CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 4466677777777777777777777777776532 2234567777777777777777777777776643 2234556666
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC
Q 009506 185 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 264 (533)
Q Consensus 185 l~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 264 (533)
...|...|++++|.++|+++.+.... +..+|+.+...+.+.|++++|++.|+++.+.+ +.+...|..+...+...|+
T Consensus 142 ~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~ 218 (388)
T 1w3b_A 142 GNLLKALGRLEEAKACYLKAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD--PNFLDAYINLGNVLKEARI 218 (388)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCC
Confidence 66777777777777777777765433 56677777777777777777777777776654 3456667777777777777
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHH
Q 009506 265 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVEC 343 (533)
Q Consensus 265 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~ 343 (533)
+++|...|++..+.. +.+..++..+...|.+.|++++|...|+++.+.+. .+..++..+...+.+.|+ ++|.+.++.
T Consensus 219 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 296 (388)
T 1w3b_A 219 FDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNT 296 (388)
T ss_dssp TTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 777777777766542 22466777777777777777777777777766431 134566777777777777 777777777
Q ss_pred HHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhcc-Cc-cchhhHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009506 344 VEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK-DV-KKAYCNCLIDLCVNLNLLENACKLLELGLT 413 (533)
Q Consensus 344 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 413 (533)
+.+..|+.......++..+...|+. ++|...|+++.. .| +...|..+...|.+.|++++|...|+++.+
T Consensus 297 al~~~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 297 ALRLCPTHADSLNNLANIKREQGNI-EEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHHCTTCHHHHHHHHHHHHTTTCH-HHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHhhCcccHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7777776666666777777777766 777777776643 22 344677777777777777777777777765
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=4.9e-20 Score=184.09 Aligned_cols=341 Identities=14% Similarity=0.079 Sum_probs=283.4
Q ss_pred HHhhHHHHHhhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 009506 91 KEKSYDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 170 (533)
Q Consensus 91 ~~~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~ 170 (533)
.+...+..+.+.. +.++..+..+...+.+.|++++|...++...+.. +.+..+|+.+..++.+.|++++|++.|+++.
T Consensus 17 ~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 94 (388)
T 1w3b_A 17 AAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHAL 94 (388)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3455555555432 3356677888888999999999999999988753 4578899999999999999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHH
Q 009506 171 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 250 (533)
Q Consensus 171 ~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~ 250 (533)
+.. +.+..+|..+..+|.+.|++++|.+.|+++.+.... +...+..+...+...|++++|.+.|+++.+.. +.+..
T Consensus 95 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~ 170 (388)
T 1w3b_A 95 RLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIETQ--PNFAV 170 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC--TTCHH
T ss_pred HcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHH
Confidence 753 345678999999999999999999999999987544 56677888899999999999999999998764 45789
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCC-CHHHHHHHHHHH
Q 009506 251 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP-DDRFCGCLLNVM 329 (533)
Q Consensus 251 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~ 329 (533)
+|..+...|.+.|++++|...|+++.+.+ +.+...|..+...+...|++++|...|++..+.. | +..++..+...+
T Consensus 171 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~ 247 (388)
T 1w3b_A 171 AWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS--PNHAVVHGNLACVY 247 (388)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cCCHHHHHHHHHHH
Confidence 99999999999999999999999998854 3357789999999999999999999999988753 4 467888999999
Q ss_pred hcCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhcc--CccchhhHHHHHHHHhcCCHHHHHH
Q 009506 330 TQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK--DVKKAYCNCLIDLCVNLNLLENACK 406 (533)
Q Consensus 330 ~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~ 406 (533)
...|+ ++|...++.+.+.+|+.......++..+.+.|+. ++|.+.|+++.. +.+..+|+.+...|.+.|++++|..
T Consensus 248 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 326 (388)
T 1w3b_A 248 YEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSV-AEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVR 326 (388)
T ss_dssp HHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999 9999999999999999888888999999999987 999999998753 3466789999999999999999999
Q ss_pred HHHHHHhccccCCccccCccceeecccccCh-hhHHHHHHHH
Q 009506 407 LLELGLTLEVYTDIQSRSPTQWSLHLKSLSL-GAALTALHIW 447 (533)
Q Consensus 407 l~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~-g~~~~a~~~~ 447 (533)
.++++.+. .|+. ...|..+...+.. |...+|+..+
T Consensus 327 ~~~~al~~--~p~~----~~~~~~l~~~~~~~g~~~~A~~~~ 362 (388)
T 1w3b_A 327 LYRKALEV--FPEF----AAAHSNLASVLQQQGKLQEALMHY 362 (388)
T ss_dssp HHHHHTTS--CTTC----HHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred HHHHHHhc--CCCc----HHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99998764 2432 2233333333333 7777777765
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.87 E-value=2.7e-19 Score=182.14 Aligned_cols=300 Identities=9% Similarity=-0.011 Sum_probs=255.8
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009506 106 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 185 (533)
Q Consensus 106 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 185 (533)
.++..+..+...|.+.|++++|+.+|+++.+.. +.+..+|..+..++...|++++|+..|+++.+.+ +.+..++..+.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 367789999999999999999999999998752 4578999999999999999999999999999865 45688999999
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCcCH---HHHHHHH------------HHHHhcCCHHHHHHHHHHHHhCCCCCCCHH
Q 009506 186 RAYGRARYGEDTLSVYREMKEKGMQLSV---TLYNTLL------------AMCADVGYTDEAFEIFEDMKSSENCQPDSW 250 (533)
Q Consensus 186 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~---~~~~~li------------~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~ 250 (533)
.+|.+.|++++|.+.|+++.+.... +. ..+..++ ..+.+.|++++|++.|+++.+.. +.+..
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~ 178 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC--VWDAE 178 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChH
Confidence 9999999999999999999986433 33 5665554 44889999999999999998765 56889
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCH-HHHHHH----
Q 009506 251 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD-RFCGCL---- 325 (533)
Q Consensus 251 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~l---- 325 (533)
.+..+..+|.+.|++++|.++|+++.+.. +.+..+|..+...|...|++++|...|+++.+. .|+. ..+..+
T Consensus 179 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~ 255 (450)
T 2y4t_A 179 LRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVK 255 (450)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHH
Confidence 99999999999999999999999988753 356899999999999999999999999999865 3443 344444
Q ss_pred --------HHHHhcCCh-HHHHHHHHHHHhcCCChhH----HHHHHHHhhhhhccHHHHHHHHHhhhcc--CccchhhHH
Q 009506 326 --------LNVMTQTPK-EELGKLVECVEKSNSKLGY----VVKLLLEEQDIEGDFKKEATELFNSISK--DVKKAYCNC 390 (533)
Q Consensus 326 --------l~~~~~~~~-~~a~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~~a~~~~~~~~~--~~~~~~~~~ 390 (533)
...+.+.|+ ++|..+++.+.+..|+... ....++..+.+.|+. ++|...++++.. +.+...|..
T Consensus 256 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~a~~~~p~~~~~~~~ 334 (450)
T 2y4t_A 256 KLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKP-VEAIRVCSEVLQMEPDNVNALKD 334 (450)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCH-HHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCcccHHHHHH
Confidence 778888899 9999999999998888543 346778888899987 999999998643 335679999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc
Q 009506 391 LIDLCVNLNLLENACKLLELGLTL 414 (533)
Q Consensus 391 li~~~~~~g~~~~A~~l~~~m~~~ 414 (533)
+..+|.+.|++++|...++++.+.
T Consensus 335 l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 335 RAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHh
Confidence 999999999999999999999874
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.7e-17 Score=168.74 Aligned_cols=291 Identities=11% Similarity=0.026 Sum_probs=242.8
Q ss_pred HHhhHHHHHhhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 009506 91 KEKSYDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 170 (533)
Q Consensus 91 ~~~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~ 170 (533)
.+..++..+.+.. +.+...|..+...|.+.|++++|+..|+++.+.+ +.+..+|..+..+|.+.|++++|++.|+++.
T Consensus 44 ~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 121 (450)
T 2y4t_A 44 DALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVL 121 (450)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4566666666542 4578999999999999999999999999998864 3468899999999999999999999999999
Q ss_pred HCCCCCC-H---HHHHHHH------------HHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 009506 171 DNGLSPN-W---NTYASLL------------RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFE 234 (533)
Q Consensus 171 ~~g~~p~-~---~~~~~ll------------~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 234 (533)
+.. |+ . ..+..+. ..|.+.|++++|..+|+++.+.... +..++..+..+|.+.|++++|++
T Consensus 122 ~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~ 198 (450)
T 2y4t_A 122 KSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVW-DAELRELRAECFIKEGEPRKAIS 198 (450)
T ss_dssp TSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCGGGGHH
T ss_pred hcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHCCCHHHHHH
Confidence 864 44 3 5565554 4488999999999999999987544 78899999999999999999999
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH------------HHHHHhcCChhH
Q 009506 235 IFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL------------IQCYGKAQRTDD 302 (533)
Q Consensus 235 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l------------i~~~~~~g~~~~ 302 (533)
+|+++.+.. +.+..+|..+...|...|++++|...|+++.+.. +.+...+..+ ...|.+.|++++
T Consensus 199 ~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 275 (450)
T 2y4t_A 199 DLKAASKLK--NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTD 275 (450)
T ss_dssp HHHHHHHHH--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 999998764 5678999999999999999999999999998753 2234445444 788999999999
Q ss_pred HHHHHHHhhhCCCCCC-----HHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHH
Q 009506 303 VVRALNRLPELGITPD-----DRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELF 376 (533)
Q Consensus 303 a~~~~~~m~~~g~~p~-----~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~ 376 (533)
|..+|+++.+.. |+ ...+..+..++.+.|+ ++|...++.+.+..|+.......++..+...|++ ++|...|
T Consensus 276 A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~-~~A~~~~ 352 (450)
T 2y4t_A 276 ATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMY-DEAIQDY 352 (450)
T ss_dssp HHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-HHHHHHH
T ss_pred HHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCH-HHHHHHH
Confidence 999999998743 44 3478888999999999 9999999999999998888888999999999987 9999999
Q ss_pred hhhcc-Cc-cchhhHHHH
Q 009506 377 NSISK-DV-KKAYCNCLI 392 (533)
Q Consensus 377 ~~~~~-~~-~~~~~~~li 392 (533)
++... .| +...+..+.
T Consensus 353 ~~al~~~p~~~~~~~~l~ 370 (450)
T 2y4t_A 353 ETAQEHNENDQQIREGLE 370 (450)
T ss_dssp HHHHTTSSSCHHHHHHHH
T ss_pred HHHHHhCcchHHHHHHHH
Confidence 98753 33 344555555
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=6.8e-21 Score=200.77 Aligned_cols=170 Identities=13% Similarity=0.156 Sum_probs=136.0
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 009506 105 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKA---IGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 181 (533)
Q Consensus 105 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 181 (533)
..-..+||+||++|++.|++++|.++|++|.+ .|+.||++|||+||++|++.|++++|.++|++|.+.|+.||.+||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 33467899999999999999999999998864 489999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCh-HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 009506 182 ASLLRAYGRARYG-EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 260 (533)
Q Consensus 182 ~~ll~~~~~~g~~-~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~ 260 (533)
|+||+++++.|+. ++|.++|++|.+.|+.||..+|+.++.++.+.+-++.+.++...+.-.....|...+...|.+.|.
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s 283 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYA 283 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHc
Confidence 9999999999985 789999999999999999999999998776654333333332222111111122556667788888
Q ss_pred hcCC---------hHHHHHHHHH
Q 009506 261 CRGK---------VSEAEAMFNE 274 (533)
Q Consensus 261 ~~g~---------~~~A~~~~~~ 274 (533)
+.+. .++-...|++
T Consensus 284 ~d~~~s~pk~~~~~~~L~~~~~~ 306 (1134)
T 3spa_A 284 KDGRVSYPKLHLPLKTLQCLFEK 306 (1134)
T ss_dssp CCSCCCCCCCSSCHHHHHHHHHH
T ss_pred cCCCCcCccccCCHHHHHHHHHH
Confidence 7662 3555555554
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.6e-16 Score=155.95 Aligned_cols=302 Identities=9% Similarity=-0.029 Sum_probs=251.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009506 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 186 (533)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 186 (533)
|+..+..+...+.+.|++++|+..|+++.+.. +.+..+|..+...+...|++++|+..|+++.+.. +-+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 45678889999999999999999999998753 3468899999999999999999999999999764 347789999999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCC--cCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHH
Q 009506 187 AYGRARYGEDTLSVYREMKEKGMQ--LSVTLYNTL------------LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTF 252 (533)
Q Consensus 187 ~~~~~g~~~~a~~~~~~m~~~g~~--~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~ 252 (533)
.|.+.|++++|...|++..+.... .+...+..+ ...+...|++++|.++|+++.+.. +.+...+
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~ 157 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC--VWDAELR 157 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCchHHH
Confidence 999999999999999999887431 144455444 578899999999999999998865 5678899
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHH---------
Q 009506 253 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG--------- 323 (533)
Q Consensus 253 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~--------- 323 (533)
..+...|...|++++|...++++.+.. +.+...+..+...|...|++++|...|++..+.... +...+.
T Consensus 158 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~ 235 (359)
T 3ieg_A 158 ELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLN 235 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHH
Confidence 999999999999999999999988753 457889999999999999999999999999875322 223322
Q ss_pred ---HHHHHHhcCCh-HHHHHHHHHHHhcCCChhHHH----HHHHHhhhhhccHHHHHHHHHhhhcc-C-ccchhhHHHHH
Q 009506 324 ---CLLNVMTQTPK-EELGKLVECVEKSNSKLGYVV----KLLLEEQDIEGDFKKEATELFNSISK-D-VKKAYCNCLID 393 (533)
Q Consensus 324 ---~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~~a~~~~~~~~~-~-~~~~~~~~li~ 393 (533)
.+...+.+.|+ ++|...++.+.+..|+..... ..++..+...|+. ++|...|++... . .+...|..+..
T Consensus 236 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~ 314 (359)
T 3ieg_A 236 KLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKP-VEAIRICSEVLQMEPDNVNALKDRAE 314 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCH-HHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 22556778888 999999999999888865442 4567888888987 999999988753 3 35668999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcc
Q 009506 394 LCVNLNLLENACKLLELGLTLE 415 (533)
Q Consensus 394 ~~~~~g~~~~A~~l~~~m~~~g 415 (533)
.|.+.|++++|...|+++.+..
T Consensus 315 ~~~~~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 315 AYLIEEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHcCCHHHHHHHHHHHHhcC
Confidence 9999999999999999987653
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.80 E-value=6e-17 Score=167.49 Aligned_cols=301 Identities=11% Similarity=0.013 Sum_probs=213.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009506 108 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 187 (533)
Q Consensus 108 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 187 (533)
...|..+...|.+.|++++|+..|+++.... ||...|..+..++.+.|++++|+..|+++.+.+ +.+..++..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 3456667777777888888888888877643 677778888888888888888888888777654 3456677778888
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCc--------------------------------------------------------
Q 009506 188 YGRARYGEDTLSVYREMKEKGMQL-------------------------------------------------------- 211 (533)
Q Consensus 188 ~~~~g~~~~a~~~~~~m~~~g~~~-------------------------------------------------------- 211 (533)
|.+.|++++|...|+++.+.+...
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence 888888888888887776654210
Q ss_pred ----------------------CHHHHHHHHHHHHh---cCCHHHHHHHHHHHHh-----CCCC-------CCCHHHHHH
Q 009506 212 ----------------------SVTLYNTLLAMCAD---VGYTDEAFEIFEDMKS-----SENC-------QPDSWTFSS 254 (533)
Q Consensus 212 ----------------------~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~~~~-------~p~~~~~~~ 254 (533)
+...+..+...+.. .|++++|.++|+++.+ .... +.+..++..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence 02223333333333 7888888888887766 3110 123556777
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh
Q 009506 255 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 334 (533)
Q Consensus 255 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 334 (533)
+...|...|++++|..+|+++.+.. |+...+..+...|...|++++|...|+++.+... .+...+..+...+...|+
T Consensus 243 ~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~ 319 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQN 319 (514)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhCC
Confidence 7788888888888888888877754 3477777788888888888888888888776532 245567777777888887
Q ss_pred -HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhcc--CccchhhHHHHHHHHhcCCHHHHHHHHHHH
Q 009506 335 -EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK--DVKKAYCNCLIDLCVNLNLLENACKLLELG 411 (533)
Q Consensus 335 -~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 411 (533)
++|...++.+.+..|........++..+...|+. ++|...|++... ..+...|..+...|.+.|++++|...++++
T Consensus 320 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 320 YDQAGKDFDKAKELDPENIFPYIQLACLAYRENKF-DDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp TTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCH-HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 8888888888877777766667777777777876 788888777543 234557777888888888888888888877
Q ss_pred Hhcc
Q 009506 412 LTLE 415 (533)
Q Consensus 412 ~~~g 415 (533)
....
T Consensus 399 ~~~~ 402 (514)
T 2gw1_A 399 IELE 402 (514)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 6543
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.79 E-value=7.7e-17 Score=166.67 Aligned_cols=341 Identities=13% Similarity=-0.019 Sum_probs=273.2
Q ss_pred HHhhHHHHHhhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 009506 91 KEKSYDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 170 (533)
Q Consensus 91 ~~~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~ 170 (533)
.+...+.++.+.. ||+..|..+..+|.+.|++++|+..|+++.+.. +.+..+|..+..++.+.|++++|+..|+++.
T Consensus 24 ~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 100 (514)
T 2gw1_A 24 DAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADAMFDLSVLS 100 (514)
T ss_dssp HHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4566777777655 799999999999999999999999999998754 3467899999999999999999999999997
Q ss_pred HCCCCCC-------------------------------------------------------------------------
Q 009506 171 DNGLSPN------------------------------------------------------------------------- 177 (533)
Q Consensus 171 ~~g~~p~------------------------------------------------------------------------- 177 (533)
+.+- ++
T Consensus 101 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (514)
T 2gw1_A 101 LNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFAN 179 (514)
T ss_dssp HSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSS
T ss_pred hcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHH
Confidence 7541 11
Q ss_pred ------HHHHHHHHHHHH---hcCChHHHHHHHHHHHH-----cCC--------CcCHHHHHHHHHHHHhcCCHHHHHHH
Q 009506 178 ------WNTYASLLRAYG---RARYGEDTLSVYREMKE-----KGM--------QLSVTLYNTLLAMCADVGYTDEAFEI 235 (533)
Q Consensus 178 ------~~~~~~ll~~~~---~~g~~~~a~~~~~~m~~-----~g~--------~~~~~~~~~li~~~~~~g~~~~A~~~ 235 (533)
...+..+...+. +.|++++|..+|+++.+ ... +.+..++..+...+...|++++|.+.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 259 (514)
T 2gw1_A 180 YDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHED 259 (514)
T ss_dssp CCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 233333333333 38999999999999988 311 22467788889999999999999999
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCC
Q 009506 236 FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 315 (533)
Q Consensus 236 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 315 (533)
|+++.+.. |+...|..+...|...|++++|...|+++.+.. +.+...+..+...|...|++++|...|++..+...
T Consensus 260 ~~~~l~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 335 (514)
T 2gw1_A 260 IKKAIELF---PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDP 335 (514)
T ss_dssp HHHHHHHC---CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCS
T ss_pred HHHHHhhC---ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCh
Confidence 99998865 338889999999999999999999999988753 34677899999999999999999999999987643
Q ss_pred CCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhcc----Ccc----ch
Q 009506 316 TPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK----DVK----KA 386 (533)
Q Consensus 316 ~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~~----~~~----~~ 386 (533)
. +...+..+...+...|+ ++|..+++.+.+..|........++..+...|+. ++|...|++... .++ ..
T Consensus 336 ~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~-~~A~~~~~~a~~~~~~~~~~~~~~~ 413 (514)
T 2gw1_A 336 E-NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDF-DKALKQYDLAIELENKLDGIYVGIA 413 (514)
T ss_dssp S-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHTSSSCSSCSH
T ss_pred h-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhhhccchHHHHHH
Confidence 3 45678888999999999 9999999999999888888888889999999987 999999987643 111 23
Q ss_pred hhHHHHHHHHh---cCCHHHHHHHHHHHHhccccCCccccCccceeecccccCh-hhHHHHHHHH
Q 009506 387 YCNCLIDLCVN---LNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSL-GAALTALHIW 447 (533)
Q Consensus 387 ~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~-g~~~~a~~~~ 447 (533)
.|..+...|.+ .|++++|...++++.... |+. ...|..+...+.. |...+|...+
T Consensus 414 ~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~----~~~~~~la~~~~~~g~~~~A~~~~ 472 (514)
T 2gw1_A 414 PLVGKATLLTRNPTVENFIEATNLLEKASKLD--PRS----EQAKIGLAQMKLQQEDIDEAITLF 472 (514)
T ss_dssp HHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC--TTC----HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC--ccc----HHHHHHHHHHHHHhcCHHHHHHHH
Confidence 88999999999 999999999999987653 332 2223333333333 7777777766
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.7e-19 Score=190.29 Aligned_cols=151 Identities=13% Similarity=0.148 Sum_probs=115.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHH---HcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHH
Q 009506 177 NWNTYASLLRAYGRARYGEDTLSVYREMK---EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 253 (533)
Q Consensus 177 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~---~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~ 253 (533)
-..|||+||++|++.|++++|.++|++|. ..|+.||++|||+||++||+.|++++|.++|++|.+.|. .||.+|||
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~-~PDvvTYn 204 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGL-TPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTC-CCCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCcHHHHH
Confidence 34688888888888888888888887765 357888888888888888888888888888888888885 88888888
Q ss_pred HHHHHHHhcCCh-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCC------HHHHHHHH
Q 009506 254 SMITICSCRGKV-SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD------DRFCGCLL 326 (533)
Q Consensus 254 ~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~------~~~~~~ll 326 (533)
+||.++++.|+. ++|.++|++|.+.|+.||..+|+.++.++.+. .+++..+++ ..+..|+ ..+...|.
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHH
Confidence 888888888874 67888888888888888888888888766554 334444444 3344444 44556666
Q ss_pred HHHhcCC
Q 009506 327 NVMTQTP 333 (533)
Q Consensus 327 ~~~~~~~ 333 (533)
+.|++.+
T Consensus 280 dl~s~d~ 286 (1134)
T 3spa_A 280 DVYAKDG 286 (1134)
T ss_dssp HHHCCCS
T ss_pred HHHccCC
Confidence 6777544
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.8e-16 Score=153.74 Aligned_cols=290 Identities=9% Similarity=-0.031 Sum_probs=241.5
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 009506 105 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 184 (533)
Q Consensus 105 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 184 (533)
..++..+..+...+...|++++|+++|+++.+.. +.+...+..++.++...|++++|..+++++.+.. +.+..++..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 4456677888999999999999999999998753 3355667778888999999999999999999854 4467889999
Q ss_pred HHHHHhcC-ChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC
Q 009506 185 LRAYGRAR-YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 263 (533)
Q Consensus 185 l~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 263 (533)
...|...| ++++|.+.|++..+.... +...|..+...+...|++++|++.|++..+.. +.+...+..+...|...|
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~ 173 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM--KGCHLPMLYIGLEYGLTN 173 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCSHHHHHHHHHHHHTT
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHh
Confidence 99999999 999999999999887544 67789999999999999999999999998865 445677888999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCC--------CCCCHHHHHHHHHHHhcCCh-
Q 009506 264 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG--------ITPDDRFCGCLLNVMTQTPK- 334 (533)
Q Consensus 264 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--------~~p~~~~~~~ll~~~~~~~~- 334 (533)
++++|.+.|++..+.. +.+...+..+...|...|++++|...|++..+.. ...+..++..+...+...|+
T Consensus 174 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 174 NSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp CHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 9999999999988753 3467889999999999999999999999987631 13335688889999999999
Q ss_pred HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhcc-Cc-cchhhHHHHHHH-HhcCCH
Q 009506 335 EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK-DV-KKAYCNCLIDLC-VNLNLL 401 (533)
Q Consensus 335 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~-~~~g~~ 401 (533)
++|...++.+.+..|+.......++..+...|+. ++|.+.|++... .| +...+..+..++ ...|+.
T Consensus 253 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 253 AEALDYHRQALVLIPQNASTYSAIGYIHSLMGNF-ENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCH-HHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHHhhCccchHHHHHHHHHHHHhccH-HHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 9999999999999888888888889999999987 999999988754 33 455777777777 455554
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.73 E-value=4.5e-16 Score=153.70 Aligned_cols=287 Identities=11% Similarity=-0.028 Sum_probs=214.3
Q ss_pred HHHcCChHHHHH-HHHHHHHCCC-CC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 009506 118 YGTAGNFDGCLN-VYEEMKAIGV-KP--NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY 193 (533)
Q Consensus 118 ~~~~g~~~~A~~-~~~~m~~~g~-~p--d~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 193 (533)
+...|++++|++ .|++...... .| +...+..+...+.+.|++++|+..|+++.+.. +.+..++..+..+|.+.|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 334578888888 7776543211 11 34557778888889999999999999988764 4567888888889999999
Q ss_pred hHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHH---------------HHHH
Q 009506 194 GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS---------------MITI 258 (533)
Q Consensus 194 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~---------------li~~ 258 (533)
+++|...|+++.+.... +..++..+...|...|++++|.+.|+++.... +.+...+.. .+..
T Consensus 114 ~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (368)
T 1fch_A 114 ELLAISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGS 190 (368)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHH
T ss_pred HHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHhhhhcccHHHHHHHH
Confidence 99999999988887543 77888888899999999999999998888754 222222221 2334
Q ss_pred HHhcCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HH
Q 009506 259 CSCRGKVSEAEAMFNEMLEAGFE-PNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EE 336 (533)
Q Consensus 259 ~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~ 336 (533)
+...|++++|..+|+++.+..-. ++..++..+...|.+.|++++|...|+++.+.. ..+..++..+...+...|+ ++
T Consensus 191 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~ 269 (368)
T 1fch_A 191 LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEE 269 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHH
Confidence 44888999999999998875311 147888889999999999999999999987753 2246688888888889888 99
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhcc-Cc-c-----------chhhHHHHHHHHhcCCHHH
Q 009506 337 LGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK-DV-K-----------KAYCNCLIDLCVNLNLLEN 403 (533)
Q Consensus 337 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~~-~~-~-----------~~~~~~li~~~~~~g~~~~ 403 (533)
|...++.+.+..|+.......++..+...|+. ++|...|++... .| + ..+|..+..+|.+.|+.++
T Consensus 270 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 348 (368)
T 1fch_A 270 AVAAYRRALELQPGYIRSRYNLGISCINLGAH-REAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDA 348 (368)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHh
Confidence 99999998888888877778888889888987 889988887542 11 1 4689999999999999999
Q ss_pred HHHHHHH
Q 009506 404 ACKLLEL 410 (533)
Q Consensus 404 A~~l~~~ 410 (533)
|..++++
T Consensus 349 A~~~~~~ 355 (368)
T 1fch_A 349 YGAADAR 355 (368)
T ss_dssp HHHHHTT
T ss_pred HHHhHHH
Confidence 9988764
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.4e-15 Score=147.37 Aligned_cols=268 Identities=9% Similarity=-0.022 Sum_probs=226.3
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHH
Q 009506 140 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 219 (533)
Q Consensus 140 ~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 219 (533)
..+...+..+...+...|++++|+++|+++.+.. +.+..++..++..+.+.|++++|..+++++.+.... +...|..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHH
Confidence 4566677888889999999999999999998764 345567777888999999999999999999987544 67889999
Q ss_pred HHHHHhcC-CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 009506 220 LAMCADVG-YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 298 (533)
Q Consensus 220 i~~~~~~g-~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 298 (533)
...+...| ++++|.+.|++..+.. +.+...|..+...|...|++++|.+.|+++.+.. +.+...+..+...|...|
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~ 173 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE--KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTN 173 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC--TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTT
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHh
Confidence 99999999 9999999999998765 4567889999999999999999999999988754 234667777999999999
Q ss_pred ChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcC---------CChhHHHHHHHHhhhhhccH
Q 009506 299 RTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSN---------SKLGYVVKLLLEEQDIEGDF 368 (533)
Q Consensus 299 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~ 368 (533)
++++|...|++..+.. ..+...+..+...+...|+ ++|...++.+.+.. +........++..+...|+.
T Consensus 174 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 174 NSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp CHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 9999999999998764 3356788889999999999 99999999887754 44445668888899999987
Q ss_pred HHHHHHHHhhhcc--CccchhhHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 009506 369 KKEATELFNSISK--DVKKAYCNCLIDLCVNLNLLENACKLLELGLTL 414 (533)
Q Consensus 369 ~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 414 (533)
++|...|++... +.+...|..+...|.+.|++++|.+.+++..+.
T Consensus 253 -~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 253 -AEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp -HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred -HHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 999999988653 335678999999999999999999999987543
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.72 E-value=4.7e-15 Score=154.30 Aligned_cols=301 Identities=11% Similarity=0.072 Sum_probs=240.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009506 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 186 (533)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 186 (533)
....|..+...+.+.|++++|++.|+++.+.. +.+...|..+..+|.+.|++++|++.|+++.+.. +.+..++..+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 35668888999999999999999999998753 3478889999999999999999999999998864 456788999999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCC------------------------------------CcCHH----------------
Q 009506 187 AYGRARYGEDTLSVYREMKEKGM------------------------------------QLSVT---------------- 214 (533)
Q Consensus 187 ~~~~~g~~~~a~~~~~~m~~~g~------------------------------------~~~~~---------------- 214 (533)
+|.+.|++++|...|+.+....- .|+..
T Consensus 102 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVS 181 (537)
T ss_dssp HHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHH
Confidence 99999999999998864311100 01111
Q ss_pred --------------HHHHHHHHHHh--------cCCHHHHHHHHHHHHhCCCCCCC-------HHHHHHHHHHHHhcCCh
Q 009506 215 --------------LYNTLLAMCAD--------VGYTDEAFEIFEDMKSSENCQPD-------SWTFSSMITICSCRGKV 265 (533)
Q Consensus 215 --------------~~~~li~~~~~--------~g~~~~A~~~~~~m~~~~~~~p~-------~~~~~~li~~~~~~g~~ 265 (533)
....+...+.. .|++++|.++|+++.+.. +.+ ..+|..+...+...|++
T Consensus 182 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~ 259 (537)
T 3fp2_A 182 SVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFLKNNL 259 (537)
T ss_dssp TSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhcccH
Confidence 11112222211 247899999999998754 233 33577777889999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHH
Q 009506 266 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECV 344 (533)
Q Consensus 266 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~ 344 (533)
++|...|++..+.. |+...+..+...|...|++++|...|+++.+.. ..+..++..+...+...|+ ++|...++.+
T Consensus 260 ~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 336 (537)
T 3fp2_A 260 LDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKA 336 (537)
T ss_dssp HHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99999999998854 678889999999999999999999999998764 2356788889999999999 9999999999
Q ss_pred HhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhcc--CccchhhHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 009506 345 EKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK--DVKKAYCNCLIDLCVNLNLLENACKLLELGLTLE 415 (533)
Q Consensus 345 ~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 415 (533)
.+..|........++..+...|+. ++|...|++... +.+...|..+...|.+.|++++|...++++.+..
T Consensus 337 ~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 337 QSLNPENVYPYIQLACLLYKQGKF-TESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp HHHCTTCSHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 999998888888899999999987 999999988653 3356689999999999999999999999997765
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.72 E-value=3e-14 Score=139.51 Aligned_cols=296 Identities=10% Similarity=0.001 Sum_probs=239.0
Q ss_pred HHhhHHHHHhhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 009506 91 KEKSYDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 170 (533)
Q Consensus 91 ~~~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~ 170 (533)
.+...+..+.+.. +.++..|..+...|.+.|++++|+..|+++.+.. +-+...|..+...+...|++++|+..|+++.
T Consensus 21 ~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 98 (359)
T 3ieg_A 21 DALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVL 98 (359)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 4556666666543 3468899999999999999999999999998753 2367889999999999999999999999999
Q ss_pred HCCCCC----CHHHHHHH------------HHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 009506 171 DNGLSP----NWNTYASL------------LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFE 234 (533)
Q Consensus 171 ~~g~~p----~~~~~~~l------------l~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 234 (533)
+.. | +...+..+ ...+...|++++|.++++++.+.... +...+..+...+...|++++|.+
T Consensus 99 ~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~ 175 (359)
T 3ieg_A 99 KSN--PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVW-DAELRELRAECFIKEGEPRKAIS 175 (359)
T ss_dssp TSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcC--CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHCCCHHHHHH
Confidence 753 5 44455444 57889999999999999999987544 78899999999999999999999
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH------------HHHHHHHhcCChhH
Q 009506 235 IFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT------------SLIQCYGKAQRTDD 302 (533)
Q Consensus 235 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~------------~li~~~~~~g~~~~ 302 (533)
.++++.+.. +.+..++..+...|...|++++|...|++..+.. +.+...+. .+...+.+.|++++
T Consensus 176 ~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 252 (359)
T 3ieg_A 176 DLKAASKLK--SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTD 252 (359)
T ss_dssp HHHHHHTTC--SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 999998865 5688999999999999999999999999988753 22333333 23667899999999
Q ss_pred HHHHHHHhhhCCCCCCHH----HHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHh
Q 009506 303 VVRALNRLPELGITPDDR----FCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFN 377 (533)
Q Consensus 303 a~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~ 377 (533)
|...|+++.+.... +.. .+..+...+...|+ ++|...++.+.+..|+.......++..+...|+. ++|.+.|+
T Consensus 253 A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~A~~~~~ 330 (359)
T 3ieg_A 253 ATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMY-DEAIQDYE 330 (359)
T ss_dssp HHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-HHHHHHHH
T ss_pred HHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCH-HHHHHHHH
Confidence 99999999875422 222 34457788889999 9999999999999998888888999999999987 99999999
Q ss_pred hhcc-Cc-cchhhHHHHHHHH
Q 009506 378 SISK-DV-KKAYCNCLIDLCV 396 (533)
Q Consensus 378 ~~~~-~~-~~~~~~~li~~~~ 396 (533)
+... .| +...+..+..+..
T Consensus 331 ~a~~~~p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 331 AAQEHNENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHhcCCCChHHHHHHHHHHH
Confidence 8754 33 3445555554443
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.9e-15 Score=149.25 Aligned_cols=279 Identities=11% Similarity=-0.041 Sum_probs=204.0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009506 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 186 (533)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 186 (533)
+...|..+...+.+.|++++|+++|+++.+.. +.+..+|..+..++...|++++|+..|+++.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 44558888999999999999999999998753 3478889999999999999999999999998764 456889999999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCC---------cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 009506 187 AYGRARYGEDTLSVYREMKEKGMQ---------LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 257 (533)
Q Consensus 187 ~~~~~g~~~~a~~~~~~m~~~g~~---------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~ 257 (533)
.|.+.|++++|...|+++.+.... .....+..+...+.+.|++++|+++|+++.+...-..+..+|..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 999999999999999998875321 01233445577888899999999999998876521126888999999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HH
Q 009506 258 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EE 336 (533)
Q Consensus 258 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~ 336 (533)
.|.+.|++++|.+.|++..+.. +.+..+|..+..+|.+.|++++|...|++..+.. ..+..++..+..++...|+ ++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 9999999999999999987753 3457888899999999999999999999887753 2235677777778877777 77
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhccCccchhhHHHHHHHHhcCCHHHHHHHHHH
Q 009506 337 LGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLEL 410 (533)
Q Consensus 337 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 410 (533)
|...++.+.+..|+..... + ......+...|..+..++...|+.+.|..+.+.
T Consensus 300 A~~~~~~al~~~~~~~~~~----------~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQ----------Q-----------VPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHCC---------------------------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccCCCc----------c-----------cchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 7777776655443321100 0 000011355788888888899998888777664
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.4e-15 Score=150.13 Aligned_cols=232 Identities=9% Similarity=-0.057 Sum_probs=166.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 009506 142 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 221 (533)
Q Consensus 142 d~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 221 (533)
+...|..+...+.+.|++++|+++|+++.+.. +.+..++..+...|.+.|++++|+..|+++.+.... +..+|..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHH
Confidence 44558888888999999999999999998764 457888999999999999999999999998887543 6888999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCC----------HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCHHHHHHH
Q 009506 222 MCADVGYTDEAFEIFEDMKSSENCQPD----------SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE-PNLFVLTSL 290 (533)
Q Consensus 222 ~~~~~g~~~~A~~~~~~m~~~~~~~p~----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~l 290 (533)
.|...|++++|++.|+++.+.. +.+ ...+..+...|.+.|++++|.++|+++.+..-. .+..++..+
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 9999999999999998887643 111 223344577888888999999999888775311 157788888
Q ss_pred HHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHH
Q 009506 291 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFK 369 (533)
Q Consensus 291 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 369 (533)
...|...|++++|...|++..+.. ..+..++..+..++...|+ ++|...++.+.+..|+.......++..|...|+.
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~- 297 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAY- 297 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC-
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH-
Confidence 888888899999998888887653 2245677777777777777 7777777776666665554445555555555554
Q ss_pred HHHHHHHhhh
Q 009506 370 KEATELFNSI 379 (533)
Q Consensus 370 ~~a~~~~~~~ 379 (533)
++|...|++.
T Consensus 298 ~~A~~~~~~a 307 (365)
T 4eqf_A 298 REAVSNFLTA 307 (365)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555543
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.70 E-value=6.3e-15 Score=153.28 Aligned_cols=278 Identities=12% Similarity=0.045 Sum_probs=148.0
Q ss_pred HhhHHHHHhhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 009506 92 EKSYDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD 171 (533)
Q Consensus 92 ~~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 171 (533)
+...+..+.+.. +.++..|..+..+|.+.|++++|++.|+++.+.. +.+..+|..+..++...|++++|++.|+.+..
T Consensus 44 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 121 (537)
T 3fp2_A 44 AIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTDAMFDLSVLSL 121 (537)
T ss_dssp CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 444555555433 3478899999999999999999999999998753 34678889999999999999999988853311
Q ss_pred CC------------------------------------CCCCHH------------------------------HHHHHH
Q 009506 172 NG------------------------------------LSPNWN------------------------------TYASLL 185 (533)
Q Consensus 172 ~g------------------------------------~~p~~~------------------------------~~~~ll 185 (533)
.. ..|+.. ....+.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 201 (537)
T 3fp2_A 122 NGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQ 201 (537)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHH
Confidence 00 001000 011111
Q ss_pred HHHHh--------cCChHHHHHHHHHHHHcCCCcC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHH
Q 009506 186 RAYGR--------ARYGEDTLSVYREMKEKGMQLS-------VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 250 (533)
Q Consensus 186 ~~~~~--------~g~~~~a~~~~~~m~~~g~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~ 250 (533)
..+.. .|++++|..+|+++.+.... + ..+|..+...+...|++++|.+.|++..+. .|+..
T Consensus 202 ~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~---~~~~~ 277 (537)
T 3fp2_A 202 RLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL---HPTPN 277 (537)
T ss_dssp HHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCHH
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc---CCCch
Confidence 11111 12444555555555443221 1 123444444455555555555555555443 23344
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHh
Q 009506 251 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 330 (533)
Q Consensus 251 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 330 (533)
.|..+...|...|++++|.+.|+++.+.. +.+..+|..+...|...|++++|...|++..+.... +...+..+...+.
T Consensus 278 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~ 355 (537)
T 3fp2_A 278 SYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-NVYPYIQLACLLY 355 (537)
T ss_dssp HHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 55555555555555555555555544432 123444555555555555555555555555443211 2234444555555
Q ss_pred cCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhh
Q 009506 331 QTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNS 378 (533)
Q Consensus 331 ~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~ 378 (533)
..|+ ++|...++.+.+..|+.......++..+...|+. ++|...|++
T Consensus 356 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~ 403 (537)
T 3fp2_A 356 KQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDF-DTAIKQYDI 403 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCH-HHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCH-HHHHHHHHH
Confidence 5555 5555555555555555444444445555555544 455555444
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.3e-16 Score=156.65 Aligned_cols=275 Identities=12% Similarity=0.049 Sum_probs=138.8
Q ss_pred HHhhHHHHHhhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 009506 91 KEKSYDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 170 (533)
Q Consensus 91 ~~~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~ 170 (533)
++.....++ +++.+|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|++.++..+
T Consensus 21 ~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ar 88 (449)
T 1b89_A 21 RAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMAR 88 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 444444444 34569999999999999999999999663 688899999999999999999999777776
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHH
Q 009506 171 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 250 (533)
Q Consensus 171 ~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~ 250 (533)
+. .+++.+.+.|+.+|.+.|+++++.++++ .|+..+|+.+...|...|++++|...|..+ .
T Consensus 89 k~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----------~ 149 (449)
T 1b89_A 89 KK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------S 149 (449)
T ss_dssp ----------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----------T
T ss_pred Hh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----------h
Confidence 64 4668899999999999999999998885 267789999999999999999999999977 2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHh
Q 009506 251 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 330 (533)
Q Consensus 251 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 330 (533)
.|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+ ..++.-...++..|.
T Consensus 150 n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~lv~~Ye 218 (449)
T 1b89_A 150 NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQ 218 (449)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHHHHHHH
Confidence 5999999999999999999999987 48999999999999999999996655543 234444557999999
Q ss_pred cCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhh--ccHHHHHHHHHhh-hccCc------cchhhHHHHHHHHhcCC
Q 009506 331 QTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIE--GDFKKEATELFNS-ISKDV------KKAYCNCLIDLCVNLNL 400 (533)
Q Consensus 331 ~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~~a~~~~~~-~~~~~------~~~~~~~li~~~~~~g~ 400 (533)
+.|. +++..+++......+....+.+-|...|++- |++ .+.+++|.+ +..++ +...|..+.-.|.+.++
T Consensus 219 k~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~-~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e 297 (449)
T 1b89_A 219 DRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKM-REHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEE 297 (449)
T ss_dssp HTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHH-HHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred HCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHH-HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhch
Confidence 9999 9999999999988888877777777666654 555 566666654 33222 45689999999999999
Q ss_pred HHHHHHHH
Q 009506 401 LENACKLL 408 (533)
Q Consensus 401 ~~~A~~l~ 408 (533)
++.|....
T Consensus 298 ~d~A~~tm 305 (449)
T 1b89_A 298 YDNAIITM 305 (449)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99997743
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.70 E-value=6.3e-15 Score=145.44 Aligned_cols=266 Identities=12% Similarity=0.018 Sum_probs=220.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009506 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 186 (533)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 186 (533)
+...+..+...|.+.|++++|+..|+++.+.. +.+..+|..+..++...|++++|++.|+++.+.. +.+..++..+..
T Consensus 63 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~ 140 (368)
T 1fch_A 63 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAV 140 (368)
T ss_dssp TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 34567889999999999999999999999864 4478899999999999999999999999999865 457889999999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCcCHHHHHH---------------HHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHH
Q 009506 187 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNT---------------LLAMCADVGYTDEAFEIFEDMKSSENCQPDSWT 251 (533)
Q Consensus 187 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~---------------li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~ 251 (533)
.|...|++++|...|+++.+.... +...+.. .+..+...|++++|.+.|+++.+...-.++..+
T Consensus 141 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 219 (368)
T 1fch_A 141 SFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDV 219 (368)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHH
Confidence 999999999999999999986543 2222211 244444889999999999999886521116899
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhc
Q 009506 252 FSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 331 (533)
Q Consensus 252 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 331 (533)
+..+...|.+.|++++|...|+++.+.. +.+...|..+...|.+.|++++|...|+++.+.. ..+...+..+..++.+
T Consensus 220 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~ 297 (368)
T 1fch_A 220 QCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCIN 297 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 9999999999999999999999988753 3457899999999999999999999999998753 2356788899999999
Q ss_pred CCh-HHHHHHHHHHHhcCCCh-----------hHHHHHHHHhhhhhccHHHHHHHHHhh
Q 009506 332 TPK-EELGKLVECVEKSNSKL-----------GYVVKLLLEEQDIEGDFKKEATELFNS 378 (533)
Q Consensus 332 ~~~-~~a~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~~a~~~~~~ 378 (533)
.|+ ++|...++.+....|+. ......++..+...|+. ++|..++++
T Consensus 298 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~ 355 (368)
T 1fch_A 298 LGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQS-DAYGAADAR 355 (368)
T ss_dssp HTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCG-GGHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCCh-HhHHHhHHH
Confidence 999 99999999988776665 56668888899888987 788777653
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.69 E-value=1.1e-14 Score=140.98 Aligned_cols=275 Identities=11% Similarity=-0.013 Sum_probs=200.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009506 109 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 188 (533)
Q Consensus 109 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 188 (533)
..+..+...+.+.|++++|+.+|+++.+.. +.+...|..+..++...|++++|.+.|+++.+.. +.+..++..+...|
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 346677888899999999999999998753 3477889999999999999999999999998864 45788999999999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCcCHHHHHHH--------------HH-HHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHH
Q 009506 189 GRARYGEDTLSVYREMKEKGMQLSVTLYNTL--------------LA-MCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 253 (533)
Q Consensus 189 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~ 253 (533)
...|++++|.+.++++.+.... +...+..+ .. .+...|++++|.+.++++.+.. +.+...+.
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~ 176 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN--PNDAQLHA 176 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS--TTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC--CCCHHHHH
Confidence 9999999999999999886433 22223222 22 3677788899999998887764 45788888
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCC
Q 009506 254 SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTP 333 (533)
Q Consensus 254 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 333 (533)
.+...|.+.|++++|.+.++++.+.. +.+...+..+...|...|++++|...|+++.+.. ..+...+..+...+...|
T Consensus 177 ~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g 254 (327)
T 3cv0_A 177 SLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMS 254 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhc
Confidence 88899999999999999998887753 3457788888888888999999999888887653 224556677777777777
Q ss_pred h-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhccCccchhhHHHHHHHHhcCCHHHHHHHHHHH
Q 009506 334 K-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELG 411 (533)
Q Consensus 334 ~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 411 (533)
+ ++|.+.++.+....|...... + . .....+...|..+..+|.+.|+.++|..++++.
T Consensus 255 ~~~~A~~~~~~a~~~~~~~~~~~----------~----~-------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 255 QYDLAAKQLVRAIYMQVGGTTPT----------G----E-------ASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp CHHHHHHHHHHHHHHHTTSCC--------------------------CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred cHHHHHHHHHHHHHhCCcccccc----------c----c-------chhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 7 677766666554443310000 0 0 000002346666777777777777777776643
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.67 E-value=2.3e-14 Score=138.67 Aligned_cols=270 Identities=11% Similarity=0.037 Sum_probs=169.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 009506 144 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 223 (533)
Q Consensus 144 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 223 (533)
..|..+...+...|++++|+.+|+++.+.. +.+..++..+...|.+.|++++|.+.|+++.+.... +..++..+...|
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-CHHHHHHHHHHH
Confidence 345567777888889999999998888754 346778888888888888888888888888876433 677888888888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHH--------------HH-HHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 009506 224 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM--------------IT-ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 288 (533)
Q Consensus 224 ~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 288 (533)
...|++++|++.|+++.+.. +.+...+..+ .. .+...|++++|.++++++.+.. +.+...+.
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 176 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHA 176 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTS--TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHH
Confidence 88888888888888887653 2233333332 22 2556667777777777766543 23566666
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhcc
Q 009506 289 SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGD 367 (533)
Q Consensus 289 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 367 (533)
.+...|...|++++|...++++.+.. ..+..++..+...+...|+ ++|...++.+.+..|
T Consensus 177 ~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~------------------ 237 (327)
T 3cv0_A 177 SLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINP------------------ 237 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------------------
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC------------------
Confidence 77777777777777777777765542 1133444445555554444 444444443333222
Q ss_pred HHHHHHHHHhhhccCccchhhHHHHHHHHhcCCHHHHHHHHHHHHhccccCCcc------ccCccceeecccccCh-hhH
Q 009506 368 FKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQ------SRSPTQWSLHLKSLSL-GAA 440 (533)
Q Consensus 368 ~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~------~~~~~~~~~~l~~~~~-g~~ 440 (533)
.+...|..+...|.+.|++++|.+.++++.......... ......|..+...+.. |..
T Consensus 238 ---------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 302 (327)
T 3cv0_A 238 ---------------GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRP 302 (327)
T ss_dssp ---------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCH
T ss_pred ---------------CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCH
Confidence 234466677777777888888888877776544221000 0033344444555544 666
Q ss_pred HHHHHHHHHHHH
Q 009506 441 LTALHIWINDLS 452 (533)
Q Consensus 441 ~~a~~~~~~~l~ 452 (533)
..|...+...++
T Consensus 303 ~~A~~~~~~~l~ 314 (327)
T 3cv0_A 303 DLVELTYAQNVE 314 (327)
T ss_dssp HHHHHHTTCCSH
T ss_pred HHHHHHHHHHHH
Confidence 667666554443
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.6e-14 Score=136.50 Aligned_cols=227 Identities=11% Similarity=0.124 Sum_probs=99.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHh
Q 009506 112 STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP-NWNTYASLLRAYGR 190 (533)
Q Consensus 112 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~ 190 (533)
..+.++|...|+++.|+..++.. -.|+..++..+...+...++.++|++.++++...+..| +...+..+...|.+
T Consensus 38 ~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~ 113 (291)
T 3mkr_A 38 VFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFY 113 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHH
Confidence 33444555555555555443321 12344444444444555555555555555554443222 23333444444555
Q ss_pred cCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHH---HHHHHHHHhcCChHH
Q 009506 191 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTF---SSMITICSCRGKVSE 267 (533)
Q Consensus 191 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~---~~li~~~~~~g~~~~ 267 (533)
.|++++|++.+++ ..+...+..+...|.+.|++++|.+.|+++.+.. |+.... ..++..+...|++++
T Consensus 114 ~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~---p~~~~~~l~~a~~~l~~~~~~~~e 184 (291)
T 3mkr_A 114 DQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD---EDATLTQLATAWVSLAAGGEKLQD 184 (291)
T ss_dssp TTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHCTTHHHH
T ss_pred CCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---cCcHHHHHHHHHHHHHhCchHHHH
Confidence 5555555555444 1244444445555555555555555555544432 221100 112222233344555
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-H-HHHHHHHHHH
Q 009506 268 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-E-ELGKLVECVE 345 (533)
Q Consensus 268 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~-~a~~~~~~~~ 345 (533)
|..+|+++.+. .+.+...++.+..++.+.|++++|...|++..+.. .-+..++..++..+...|+ . .+.++++.+.
T Consensus 185 A~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~ 262 (291)
T 3mkr_A 185 AYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLK 262 (291)
T ss_dssp HHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 55555554443 22344444555555555555555555555544432 1133344444444444444 2 2334444444
Q ss_pred hcCCChhH
Q 009506 346 KSNSKLGY 353 (533)
Q Consensus 346 ~~~~~~~~ 353 (533)
+.+|+...
T Consensus 263 ~~~P~~~~ 270 (291)
T 3mkr_A 263 DAHRSHPF 270 (291)
T ss_dssp HHCTTCHH
T ss_pred HhCCCChH
Confidence 44444443
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.3e-13 Score=129.85 Aligned_cols=275 Identities=9% Similarity=0.051 Sum_probs=220.1
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 009506 115 IKLYGTAGNFDGCLNVYEEMKAIGVKPNM--ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 192 (533)
Q Consensus 115 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 192 (533)
|+-....|++..|+..++..... .|+. .....+..+|...|+++.|+..++.. -+|+..++..+...|...+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCC
Confidence 34456789999999999876542 3443 35566789999999999999877552 3577889999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 009506 193 YGEDTLSVYREMKEKGMQL-SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 271 (533)
Q Consensus 193 ~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 271 (533)
+.++|++.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..++..|.+.|++++|.+.
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~ 152 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------GDSLECMAMTVQILLKLDRLDLARKE 152 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------CCSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999887555 456667777899999999999999987 35778999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHH---HHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHhc
Q 009506 272 FNEMLEAGFEPNLFVL---TSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKS 347 (533)
Q Consensus 272 ~~~m~~~g~~p~~~~~---~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~ 347 (533)
|+++.+.. |+.... ..++..+...|++++|..+|+++.+. ...+...++.+..++.+.|+ ++|...++.+...
T Consensus 153 l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 153 LKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99998864 553321 23344455669999999999999887 34577789999999999999 9999999999999
Q ss_pred CCChhHHHHHHHHhhhhhccHHHHHHHHHhhhcc-CccchhhHHHHHHHHhcCCHHHHHHHH
Q 009506 348 NSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK-DVKKAYCNCLIDLCVNLNLLENACKLL 408 (533)
Q Consensus 348 ~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~ 408 (533)
+|+....+..++..+...|+..+.+.++++++.. .|+-. .+.+...+.+.++++..-|
T Consensus 230 ~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~---~~~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 230 DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHP---FIKEYRAKENDFDRLVLQY 288 (291)
T ss_dssp CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHHHHHHHc
Confidence 9999988888888888889875567888887653 34333 3556677788888876544
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.60 E-value=4e-13 Score=125.02 Aligned_cols=226 Identities=9% Similarity=0.044 Sum_probs=191.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC--CCCC----HHHH
Q 009506 108 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG--LSPN----WNTY 181 (533)
Q Consensus 108 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~----~~~~ 181 (533)
...|..+...+.+.|++++|+..|+++.+.. .+...|..+..++...|++++|++.|++..+.. ..++ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4678889999999999999999999998876 788899999999999999999999999988642 1122 5789
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh
Q 009506 182 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 261 (533)
Q Consensus 182 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 261 (533)
..+...|.+.|++++|...|++..+.. |+. ..+.+.|++++|.+.++.+.... +.+...|..+...|..
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN--PEKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC--cchHHHHHHHHHHHHH
Confidence 999999999999999999999998864 332 34666788999999999988754 4467788899999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHH
Q 009506 262 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKL 340 (533)
Q Consensus 262 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~ 340 (533)
.|++++|...|++..+.. +.+...|..+..+|.+.|++++|...|++..+.. ..+...+..+...+...|+ ++|...
T Consensus 152 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 229 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALET 229 (258)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 999999999999988754 3467889999999999999999999999998764 2346678888889999998 899988
Q ss_pred HHHHHhcC
Q 009506 341 VECVEKSN 348 (533)
Q Consensus 341 ~~~~~~~~ 348 (533)
++.+.+..
T Consensus 230 ~~~a~~~~ 237 (258)
T 3uq3_A 230 LDAARTKD 237 (258)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhC
Confidence 88877665
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.59 E-value=3.7e-11 Score=123.62 Aligned_cols=301 Identities=14% Similarity=0.041 Sum_probs=212.3
Q ss_pred hHHhhHHHHHhhcCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhH
Q 009506 90 LKEKSYDTRARNEKWRIDPNAFSTLIKLYGT----AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGR----AKRPWQ 161 (533)
Q Consensus 90 ~~~~~l~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~----~g~~~~ 161 (533)
..+...+.+..+.| ++..+..|...|.. .+++++|++.|++..+.| +...+..|-..|.. .+++++
T Consensus 60 ~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~ 133 (490)
T 2xm6_A 60 TQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAE 133 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHH
Confidence 34555555555544 56777888888888 888888888888887754 66677777777777 678888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh----cCCHHHHH
Q 009506 162 VKTIYKEMTDNGLSPNWNTYASLLRAYGR----ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD----VGYTDEAF 233 (533)
Q Consensus 162 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~ 233 (533)
|++.|++..+.| +...+..|...|.. .++.++|.+.|++..+.| +...+..|...|.. .++.++|+
T Consensus 134 A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~ 207 (490)
T 2xm6_A 134 SVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISA 207 (490)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHH
Confidence 888888888765 56677777777776 678888888888887765 66777777777777 78888888
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChhHHHH
Q 009506 234 EIFEDMKSSENCQPDSWTFSSMITICSC----RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK----AQRTDDVVR 305 (533)
Q Consensus 234 ~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~ 305 (533)
+.|++..+.+ +...+..+...|.. .+++++|.++|++..+.| +...+..|...|.. .++.++|..
T Consensus 208 ~~~~~a~~~~----~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~ 280 (490)
T 2xm6_A 208 QWYRKSATSG----DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALE 280 (490)
T ss_dssp HHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHH
T ss_pred HHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHH
Confidence 8888877643 45667777777775 678888888888877653 45566666666666 778888888
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHhcC-----Ch-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhc---cHHHHHHHHH
Q 009506 306 ALNRLPELGITPDDRFCGCLLNVMTQT-----PK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEG---DFKKEATELF 376 (533)
Q Consensus 306 ~~~~m~~~g~~p~~~~~~~ll~~~~~~-----~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~~a~~~~ 376 (533)
+|++..+.| +...+..+...+... ++ ++|.++++...+.++. .....++..|...| +. ++|.+.|
T Consensus 281 ~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~--~a~~~lg~~y~~~g~~~~~-~~A~~~~ 354 (490)
T 2xm6_A 281 WYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDA--TAQANLGAIYFRLGSEEEH-KKAVEWF 354 (490)
T ss_dssp HHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHSCCHHHH-HHHHHHH
T ss_pred HHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCH--HHHHHHHHHHHhCCCcccH-HHHHHHH
Confidence 888877664 445555566666654 55 7777777777665433 22344444444423 33 7777777
Q ss_pred hhhccCccchhhHHHHHHHHh----cCCHHHHHHHHHHHHhcc
Q 009506 377 NSISKDVKKAYCNCLIDLCVN----LNLLENACKLLELGLTLE 415 (533)
Q Consensus 377 ~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g 415 (533)
++.....+...+..|...|.. .+++++|...|++..+.|
T Consensus 355 ~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~ 397 (490)
T 2xm6_A 355 RKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG 397 (490)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC
Confidence 776655666677777777777 677778877777776655
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.57 E-value=3e-15 Score=146.97 Aligned_cols=248 Identities=11% Similarity=0.081 Sum_probs=105.7
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 009506 120 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 199 (533)
Q Consensus 120 ~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 199 (533)
+.|++++|.++++++. +..+|..|..++.+.|++++|++.|.+ .+|..+|..++.++...|++++|+.
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 6788999999999993 334999999999999999999999965 2678899999999999999999999
Q ss_pred HHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 009506 200 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 279 (533)
Q Consensus 200 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 279 (533)
.++..++. .++..+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|++++|...|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~--------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN--------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT--------CC----------------CTTTHHHHHHHT----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 88877764 4467889999999999999999998884 477789999999999999999999999976
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHHHHHH
Q 009506 280 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLL 358 (533)
Q Consensus 280 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l 358 (533)
..|..|+.++.+.|++++|.+.++++ .+..+|..++.+|...|+ +.|......+. ..| +. ...+
T Consensus 149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~a--d~-l~~l 213 (449)
T 1b89_A 149 -----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHA--DE-LEEL 213 (449)
T ss_dssp -----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCH--HH-HHHH
T ss_pred -----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCH--hh-HHHH
Confidence 37999999999999999999999998 378899999999999999 88855443322 222 22 3357
Q ss_pred HHhhhhhccHHHHHHHHHhhhcc--CccchhhHHHHHHHHhc--CCHHHHHHHHH
Q 009506 359 LEEQDIEGDFKKEATELFNSISK--DVKKAYCNCLIDLCVNL--NLLENACKLLE 409 (533)
Q Consensus 359 ~~~~~~~g~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~--g~~~~A~~l~~ 409 (533)
+..|.+.|.+ ++|..+++..-. ......|+-|.-+|++- +++.+.+++|.
T Consensus 214 v~~Yek~G~~-eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~ 267 (449)
T 1b89_A 214 INYYQDRGYF-EELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW 267 (449)
T ss_dssp HHHHHHTTCH-HHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHS
T ss_pred HHHHHHCCCH-HHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 7888899987 999999887643 22345778887777766 34555555554
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.56 E-value=8e-11 Score=121.09 Aligned_cols=286 Identities=11% Similarity=0.019 Sum_probs=168.7
Q ss_pred CHHHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCH
Q 009506 107 DPNAFSTLIKLYGT----AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGR----AKRPWQVKTIYKEMTDNGLSPNW 178 (533)
Q Consensus 107 ~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~ 178 (533)
|+..+..|...|.. .+++++|+..|++..+.| +...+..|-..|.. .+++++|++.|++..+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 55666666666666 666666766666666542 45556666666666 666666666666666654 44
Q ss_pred HHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCCHH
Q 009506 179 NTYASLLRAYGR----ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD----VGYTDEAFEIFEDMKSSENCQPDSW 250 (533)
Q Consensus 179 ~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~p~~~ 250 (533)
..+..|-..|.. .+++++|.+.|++..+.| +...+..|...|.. .++.++|++.|++..+.+ +..
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~----~~~ 184 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG----NVW 184 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHH
Confidence 555556666665 566666666666666654 45555556666655 566666666666666532 455
Q ss_pred HHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHhhhCCCCCCHHHH
Q 009506 251 TFSSMITICSC----RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK----AQRTDDVVRALNRLPELGITPDDRFC 322 (533)
Q Consensus 251 ~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~ 322 (533)
.+..|...|.. .+++++|.+.|++..+.| +...+..|...|.. .++.++|..+|++..+.| +...+
T Consensus 185 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 258 (490)
T 2xm6_A 185 SCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQ 258 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHH
T ss_pred HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 66666666665 666666666666666543 44555555555554 566666666666666553 33444
Q ss_pred HHHHHHHhc----CCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhh-----ccHHHHHHHHHhhhccCccchhhHHHH
Q 009506 323 GCLLNVMTQ----TPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIE-----GDFKKEATELFNSISKDVKKAYCNCLI 392 (533)
Q Consensus 323 ~~ll~~~~~----~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~~a~~~~~~~~~~~~~~~~~~li 392 (533)
..+-..+.. .++ ++|.++++...+.+. ......|+..|... ++. ++|...|++.....+...+..|.
T Consensus 259 ~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~--~~a~~~Lg~~y~~~~~g~~~~~-~~A~~~~~~a~~~~~~~a~~~lg 335 (490)
T 2xm6_A 259 FRLGYILEQGLAGAKEPLKALEWYRKSAEQGN--SDGQYYLAHLYDKGAEGVAKNR-EQAISWYTKSAEQGDATAQANLG 335 (490)
T ss_dssp HHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTC--HHHHHHHHHHHHHCBTTBCCCH-HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHcCCCCCcCCH-HHHHHHHHHHHhcCCHHHHHHHH
Confidence 444444444 444 666666666554432 22223444444433 444 66666666655545555666666
Q ss_pred HHHHhcC---CHHHHHHHHHHHHhc
Q 009506 393 DLCVNLN---LLENACKLLELGLTL 414 (533)
Q Consensus 393 ~~~~~~g---~~~~A~~l~~~m~~~ 414 (533)
..|.+.| +.++|++.|++..+.
T Consensus 336 ~~y~~~g~~~~~~~A~~~~~~a~~~ 360 (490)
T 2xm6_A 336 AIYFRLGSEEEHKKAVEWFRKAAAK 360 (490)
T ss_dssp HHHHHSCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHhCCCcccHHHHHHHHHHHHHC
Confidence 6666555 566666666666554
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.55 E-value=2.1e-12 Score=119.99 Aligned_cols=202 Identities=13% Similarity=0.040 Sum_probs=172.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009506 108 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 187 (533)
Q Consensus 108 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 187 (533)
+..|..+...|...|++++|++.|+++.+.. +.+...|..+...+...|++++|++.|+++.+.. +.+..++..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 5678889999999999999999999998753 3467889999999999999999999999998764 3477889999999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChH
Q 009506 188 YGRARYGEDTLSVYREMKEKGMQL-SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 266 (533)
Q Consensus 188 ~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 266 (533)
|...|++++|.++|+++.+.+..| +...+..+...|...|++++|.+.|++..+.. +.+...+..+...|...|+++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN--RNQPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCCHH
Confidence 999999999999999988733334 56778888899999999999999999988764 456888999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCC
Q 009506 267 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 314 (533)
Q Consensus 267 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 314 (533)
+|...|+++.+.. +.+...+..+...|...|+.++|.++++++.+..
T Consensus 193 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 193 PARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 9999999987643 3567788888889999999999999999987753
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.4e-12 Score=115.94 Aligned_cols=203 Identities=7% Similarity=-0.061 Sum_probs=164.5
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009506 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 186 (533)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 186 (533)
++..|..+...|.+.|++++|++.|+++.+.. +.+...|..+...+...|++++|.+.|+++.+.. +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 46678888899999999999999999988753 3467788888899999999999999999988754 446788888889
Q ss_pred HHHhc-CChHHHHHHHHHHHHcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC
Q 009506 187 AYGRA-RYGEDTLSVYREMKEKGMQL-SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 264 (533)
Q Consensus 187 ~~~~~-g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 264 (533)
.|... |++++|...++++.+.+..| +...+..+...+...|++++|++.|+++.+.. +.+...+..+...|.+.|+
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ--PQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCchHHHHHHHHHHHcCC
Confidence 99999 99999999999888733233 36778888888999999999999998887754 4567888888889999999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC
Q 009506 265 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 313 (533)
Q Consensus 265 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 313 (533)
+++|.++++++.+..-..+...+..+...+...|+.+.+..+++.+.+.
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 9999999988877532146677777778888889999888888888654
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=4.9e-12 Score=129.28 Aligned_cols=315 Identities=11% Similarity=0.070 Sum_probs=222.9
Q ss_pred hhHHHHHhhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC--------CCCCCHHHHHHHHHHHHhcCChhHHHH
Q 009506 93 KSYDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI--------GVKPNMITYNNLLDTMGRAKRPWQVKT 164 (533)
Q Consensus 93 ~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------g~~pd~~~~~~li~~~~~~g~~~~a~~ 164 (533)
..+...............||.|...|...|++++|++.|++..+. .......+|+.+..+|...|++++|..
T Consensus 36 ~~~~~~~~~~~~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~ 115 (472)
T 4g1t_A 36 DKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQI 115 (472)
T ss_dssp HHHHHHTTSCC---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHH
Confidence 344444444444556778999999999999999999999987542 122346789999999999999999999
Q ss_pred HHHHHHHC-----C-CC-CCHHHHHHHHHHHHhc--CChHHHHHHHHHHHHcCCCcCHHHHHHHHHH---HHhcCCHHHH
Q 009506 165 IYKEMTDN-----G-LS-PNWNTYASLLRAYGRA--RYGEDTLSVYREMKEKGMQLSVTLYNTLLAM---CADVGYTDEA 232 (533)
Q Consensus 165 ~~~~m~~~-----g-~~-p~~~~~~~ll~~~~~~--g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~---~~~~g~~~~A 232 (533)
.|++..+. + .. ....++..+..++.+. +++++|+..|++..+.... +...+..+..+ +...++.++|
T Consensus 116 ~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~a 194 (472)
T 4g1t_A 116 YVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNA 194 (472)
T ss_dssp HHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCT
T ss_pred HHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHH
Confidence 99887642 1 11 2346676666666554 5689999999999887543 45555555544 4456788889
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 009506 233 FEIFEDMKSSENCQPDSWTFSSMITICSC----RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALN 308 (533)
Q Consensus 233 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 308 (533)
++.+++..+.. +.+...+..+...+.. .|++++|.+++++..... +.+...+..+...|...|++++|...|+
T Consensus 195 l~~~~~al~l~--p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~ 271 (472)
T 4g1t_A 195 IDPLRQAIRLN--PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLK 271 (472)
T ss_dssp HHHHHHHHHHC--SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhhcC--CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence 99998887754 4567777766655554 467889999999887753 3567888999999999999999999999
Q ss_pred HhhhCCCCCC-HHHHHHHHHHHhcC-------------------Ch-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhcc
Q 009506 309 RLPELGITPD-DRFCGCLLNVMTQT-------------------PK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGD 367 (533)
Q Consensus 309 ~m~~~g~~p~-~~~~~~ll~~~~~~-------------------~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 367 (533)
+..+.. |+ ..++..+...+... +. +++...++...+.+|........++..+...|+
T Consensus 272 ~al~~~--p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~ 349 (472)
T 4g1t_A 272 KALEYI--PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQ 349 (472)
T ss_dssp HHHHHS--TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTC
T ss_pred HHHHhC--CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhcc
Confidence 988753 44 44555554444321 12 566677777888888887777888999999998
Q ss_pred HHHHHHHHHhhhcc-Cccch----hhHHHHH-HHHhcCCHHHHHHHHHHHHhc
Q 009506 368 FKKEATELFNSISK-DVKKA----YCNCLID-LCVNLNLLENACKLLELGLTL 414 (533)
Q Consensus 368 ~~~~a~~~~~~~~~-~~~~~----~~~~li~-~~~~~g~~~~A~~l~~~m~~~ 414 (533)
. ++|.+.|++.-. .++.. .+..+.. .+.+.|+.++|+..|++..+.
T Consensus 350 ~-~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i 401 (472)
T 4g1t_A 350 Y-EEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI 401 (472)
T ss_dssp H-HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS
T ss_pred H-HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 7 999999987642 22221 2333333 345779999999999987754
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.3e-12 Score=118.85 Aligned_cols=200 Identities=17% Similarity=0.087 Sum_probs=139.3
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 009506 105 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 184 (533)
Q Consensus 105 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 184 (533)
++++..+..+...+.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|+..|++..+.. +-+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 3456677888888888888888888888887643 3367778888888888888888888888888754 3456778888
Q ss_pred HHHHHhc-----------CChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHH
Q 009506 185 LRAYGRA-----------RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 253 (533)
Q Consensus 185 l~~~~~~-----------g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~ 253 (533)
...|.+. |++++|+..|++..+.... +...|..+...|...|++++|++.|++..+.. .+...+.
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~ 155 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE---DTPEIRS 155 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CCHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc---cchHHHH
Confidence 8888888 8888888888877776443 56777777777888888888888887777653 5667777
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 009506 254 SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 311 (533)
Q Consensus 254 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 311 (533)
.+...|...|++++|...|++..+.. +.+...+..+...+.+.|++++|...|++..
T Consensus 156 ~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 156 ALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 77778888888888888888776643 2346677777777778888888877777653
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=4.7e-11 Score=112.49 Aligned_cols=226 Identities=14% Similarity=0.048 Sum_probs=198.2
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHH
Q 009506 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGR----AKRPWQVKTIYKEMTDNGLSPNWNTYA 182 (533)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~ 182 (533)
++..+..+...|.+.|++++|+..|++..+. -+...+..+...|.. .+++++|++.|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 5677888999999999999999999999883 466788889999999 999999999999999876 788999
Q ss_pred HHHHHHHh----cCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCCHHHHHH
Q 009506 183 SLLRAYGR----ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD----VGYTDEAFEIFEDMKSSENCQPDSWTFSS 254 (533)
Q Consensus 183 ~ll~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ 254 (533)
.+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|++.|++..+.+ +...+..
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~----~~~a~~~ 151 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN----DGDGCTI 151 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT----CHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC----cHHHHHH
Confidence 99999999 999999999999999875 78889999999999 999999999999998854 5677888
Q ss_pred HHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHhhhCCCCCCHHHHHHHH
Q 009506 255 MITICSC----RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK----AQRTDDVVRALNRLPELGITPDDRFCGCLL 326 (533)
Q Consensus 255 li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 326 (533)
+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+.
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~ 225 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLG 225 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHH
Confidence 8888888 999999999999998864 57788889999999 999999999999998875 366777788
Q ss_pred HHHhc----CCh-HHHHHHHHHHHhcCCCh
Q 009506 327 NVMTQ----TPK-EELGKLVECVEKSNSKL 351 (533)
Q Consensus 327 ~~~~~----~~~-~~a~~~~~~~~~~~~~~ 351 (533)
..+.. .++ ++|.+.++...+.+++.
T Consensus 226 ~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 226 AMQYNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 88887 777 99999999888877643
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.52 E-value=9.7e-12 Score=112.90 Aligned_cols=210 Identities=9% Similarity=-0.039 Sum_probs=173.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 009506 142 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 221 (533)
Q Consensus 142 d~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 221 (533)
+...|..+...+...|++++|++.|+++.+.. +.+..++..+...|...|++++|.+.++++.+.... +..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHH
Confidence 45678888999999999999999999998754 456889999999999999999999999999887543 7788999999
Q ss_pred HHHhc-CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 009506 222 MCADV-GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 300 (533)
Q Consensus 222 ~~~~~-g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 300 (533)
.|... |++++|.+.|+++.+.+..+.+...+..+...|...|++++|...|+++.+.. +.+...+..+...|.+.|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 99999 99999999999998733213347788899999999999999999999988753 23578899999999999999
Q ss_pred hHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHH
Q 009506 301 DDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYV 354 (533)
Q Consensus 301 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~ 354 (533)
++|..+|+++.+.....+...+..+...+...|+ +++..+++.+.+..|+....
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 218 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEEL 218 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHH
Confidence 9999999998875432456677777777778888 88888888887777765544
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=1.7e-12 Score=119.74 Aligned_cols=203 Identities=11% Similarity=0.128 Sum_probs=157.9
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009506 106 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 185 (533)
Q Consensus 106 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 185 (533)
.++..|..+...+.+.|++++|+..|+++.+.. +.+...+..+...+...|++++|++.|+++.+.. +.+..++..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 456678888889999999999999999998753 3468889999999999999999999999998764 45788899999
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCh
Q 009506 186 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 265 (533)
Q Consensus 186 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 265 (533)
..|...|++++|.+.++++.+.... +...+..+...+.+.|++++|.+.++++.+.. +.+...+..+...|.+.|++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~ 175 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELN--ENDTEARFQFGMCLANEGML 175 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHcCCH
Confidence 9999999999999999999887543 67888899999999999999999999988764 45788899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCC
Q 009506 266 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 314 (533)
Q Consensus 266 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 314 (533)
++|.+.|+++.+.. +.+..++..+..+|.+.|++++|...|+++.+..
T Consensus 176 ~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 176 DEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 99999999987753 3457788899999999999999999999987753
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.51 E-value=1.3e-11 Score=114.62 Aligned_cols=208 Identities=10% Similarity=-0.002 Sum_probs=176.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 009506 143 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 222 (533)
Q Consensus 143 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 222 (533)
...|..+...+...|++++|++.|+++.+.. +.+..++..+...|.+.|++++|.+.|+++.+.... +...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHH
Confidence 4567788888999999999999999998764 457889999999999999999999999999887544 78889999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhH
Q 009506 223 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 302 (533)
Q Consensus 223 ~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 302 (533)
|...|++++|+++|+++...+..+.+...+..+...|.+.|++++|.+.|++..+.. +.+...+..+...|...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999998733213467788899999999999999999999988754 3458889999999999999999
Q ss_pred HHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHH
Q 009506 303 VVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYV 354 (533)
Q Consensus 303 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~ 354 (533)
|..+|+++.+.. ..+...+..+...+...|+ ++|.++++.+.+..|+....
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 245 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEY 245 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHH
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHH
Confidence 999999988753 2456677888888888888 99999999888887765544
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.7e-12 Score=116.74 Aligned_cols=198 Identities=13% Similarity=0.069 Sum_probs=140.5
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHH
Q 009506 140 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 219 (533)
Q Consensus 140 ~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 219 (533)
+++...+..+...+.+.|++++|+..|++..+.. +.+...+..+...|.+.|++++|+..|++..+.... +...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHH
Confidence 3566677788888888888888888888888754 456778888888888888888888888888877544 67778888
Q ss_pred HHHHHhc-----------CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 009506 220 LAMCADV-----------GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 288 (533)
Q Consensus 220 i~~~~~~-----------g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 288 (533)
...+.+. |++++|++.|++..+.. +.+...|..+...|...|++++|...|++..+.. .+...+.
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~ 155 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN--PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRS 155 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHH
Confidence 8888888 88888888888877654 3467777888888888888888888888877766 6777788
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHH
Q 009506 289 SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECV 344 (533)
Q Consensus 289 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~ 344 (533)
.+..+|...|++++|...|++..+.. .-+...+..+..++...|+ ++|...++..
T Consensus 156 ~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 156 ALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 88888888888888888888877643 1234466666666767666 6666655543
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.50 E-value=6.3e-12 Score=118.15 Aligned_cols=247 Identities=8% Similarity=-0.004 Sum_probs=194.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--CHHHHHHHH
Q 009506 108 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP--NWNTYASLL 185 (533)
Q Consensus 108 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~~~~~ll 185 (533)
+..+......+.+.|++++|+..|++..+.. +-+...|..+..++...|++++|++.|++..+.+-.+ ...+|..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 3445667788899999999999999998753 2245588889999999999999999999999843222 234588999
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCh
Q 009506 186 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 265 (533)
Q Consensus 186 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 265 (533)
..|.+.|++++|+..|++..+.... +..+|..+...|...|++++|++.|++..+.. +.+...|..+...+...+++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~ 158 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT--TTDPKVFYELGQAYYYNKEY 158 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS--CCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC--CCcHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987544 66889999999999999999999999988764 55777888887344445699
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHhhhCC-CCCC------HHHHHHHHHHHhcCCh-
Q 009506 266 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR---TDDVVRALNRLPELG-ITPD------DRFCGCLLNVMTQTPK- 334 (533)
Q Consensus 266 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~g-~~p~------~~~~~~ll~~~~~~~~- 334 (533)
++|.+.|++..+.. +.+...+..+...+...|+ .++|...|++..+.. -.|+ ..++..+...+...|+
T Consensus 159 ~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (272)
T 3u4t_A 159 VKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK 237 (272)
T ss_dssp HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCH
Confidence 99999999988753 2347778888888888888 888999888876542 1223 1467778888888888
Q ss_pred HHHHHHHHHHHhcCCChhHHHHHHH
Q 009506 335 EELGKLVECVEKSNSKLGYVVKLLL 359 (533)
Q Consensus 335 ~~a~~~~~~~~~~~~~~~~~~~~l~ 359 (533)
++|.+.++.+.+.+|+.......+.
T Consensus 238 ~~A~~~~~~al~~~p~~~~a~~~l~ 262 (272)
T 3u4t_A 238 VKADAAWKNILALDPTNKKAIDGLK 262 (272)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHC
T ss_pred HHHHHHHHHHHhcCccHHHHHHHhh
Confidence 9999999998888887765544443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.49 E-value=1.3e-11 Score=122.02 Aligned_cols=244 Identities=7% Similarity=0.060 Sum_probs=192.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009506 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR-PWQVKTIYKEMTDNGLSPNWNTYASLL 185 (533)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~p~~~~~~~ll 185 (533)
+...|+.+...+.+.|++++|++.|++..+.. +-+...|+.+..++...|+ +++|+..|++.++.. +-+...|+.+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 35668888889999999999999999998753 2367889999999999996 999999999999864 44778999999
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh-cCC
Q 009506 186 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC-RGK 264 (533)
Q Consensus 186 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~-~g~ 264 (533)
.+|.+.|++++|+..|+++.+.... +...|..+..++.+.|++++|++.|+++.+.. +.+...|+.+..+|.+ .|.
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~--P~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED--VRNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCc
Confidence 9999999999999999999988655 78899999999999999999999999998865 5678899999999998 666
Q ss_pred hHHH-----HHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--ChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCC----
Q 009506 265 VSEA-----EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ--RTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTP---- 333 (533)
Q Consensus 265 ~~~A-----~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~---- 333 (533)
.++| ...|++..+.. +-+...|+.+...|.+.| ++++|++.+.++ +. ...+...+..+...+.+.+
T Consensus 251 ~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~ 327 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQC 327 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccc
Confidence 5777 47788777643 235678888888888877 588888888887 32 2234456677777776653
Q ss_pred -----h-HHHHHHHHHH-HhcCCChhHHHHHH
Q 009506 334 -----K-EELGKLVECV-EKSNSKLGYVVKLL 358 (533)
Q Consensus 334 -----~-~~a~~~~~~~-~~~~~~~~~~~~~l 358 (533)
. ++|.++++.+ .+.+|....++..+
T Consensus 328 ~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~ 359 (382)
T 2h6f_A 328 DNKEDILNKALELCEILAKEKDTIRKEYWRYI 359 (382)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 2 5666777776 66666665555433
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.49 E-value=5.8e-12 Score=117.07 Aligned_cols=224 Identities=8% Similarity=-0.049 Sum_probs=144.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--cC----HHHHH
Q 009506 144 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ--LS----VTLYN 217 (533)
Q Consensus 144 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~--~~----~~~~~ 217 (533)
..|..+...+...|++++|+..|++..+.. .+..++..+..+|...|++++|...+++..+.... ++ ..+|.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 456677777778888888888888877765 66777777888888888888888888777664221 11 46677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 009506 218 TLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 297 (533)
Q Consensus 218 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 297 (533)
.+...|...|++++|.+.|++.... .|+. ..+.+.|++++|.+.++++.... +.+...+..+...|...
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTE---HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH---CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc---Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence 7777777777777777777777664 3332 34555666777777777766532 12345566666677777
Q ss_pred CChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHH
Q 009506 298 QRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELF 376 (533)
Q Consensus 298 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~ 376 (533)
|++++|...|++..+... .+..++..+...+...|+ ++|.+.++.+.+..|+
T Consensus 153 ~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-------------------------- 205 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-------------------------- 205 (258)
T ss_dssp TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------------------
T ss_pred cCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH--------------------------
Confidence 777777777777665431 234455555555555555 5555544444433332
Q ss_pred hhhccCccchhhHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 009506 377 NSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTL 414 (533)
Q Consensus 377 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 414 (533)
+...|..+...|.+.|++++|...+++..+.
T Consensus 206 -------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 206 -------FVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp -------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 3345666666777777777777777766544
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=4.2e-12 Score=117.01 Aligned_cols=213 Identities=10% Similarity=0.013 Sum_probs=165.6
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHH
Q 009506 141 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 220 (533)
Q Consensus 141 pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 220 (533)
.....|..+...+...|++++|+..|+++.+.. +.+..++..+...|.+.|++++|...|+++.+.... +..++..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHH
Confidence 345667788888999999999999999999754 457889999999999999999999999999887543 788899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 009506 221 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 300 (533)
Q Consensus 221 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 300 (533)
..|...|++++|.+.|+++.+.. +.+...+..+...|.+.|++++|.+.++++.+.. +.+...+..+...|.+.|++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 175 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGML 175 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCH
Confidence 99999999999999999988765 5678889999999999999999999999988753 34678899999999999999
Q ss_pred hHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHHHHHHH
Q 009506 301 DDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLL 359 (533)
Q Consensus 301 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~ 359 (533)
++|...|+++.+.. ..+..++..+...+...|+ ++|.+.++.+.+..|+.......+.
T Consensus 176 ~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 234 (243)
T 2q7f_A 176 DEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKK 234 (243)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHT
T ss_pred HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHH
Confidence 99999999988764 2356788889999999999 9999999999988887766554443
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-10 Score=121.27 Aligned_cols=318 Identities=13% Similarity=0.057 Sum_probs=206.8
Q ss_pred hHHhhHHHHHhhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCChhHHHH----
Q 009506 90 LKEKSYDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM-GRAKRPWQVKT---- 164 (533)
Q Consensus 90 ~~~~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~-~~~g~~~~a~~---- 164 (533)
..++.++.++... .+-+...|..++..+.+.|++++|..+|+++... .|+...|...+... ...|+.++|.+
T Consensus 29 ~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~ 105 (530)
T 2ooe_A 29 DKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLSYVRETKGKLPSYKEKMAQ 105 (530)
T ss_dssp HHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHHHHHHHTTTSTTHHHHHHH
T ss_pred HHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHccchhhHHHHHHH
Confidence 3567777777653 3456778888888888889999999999888774 46777777776533 35577766654
Q ss_pred HHHHHHH-CCCCC-CHHHHHHHHHHHHh---------cCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHH----------
Q 009506 165 IYKEMTD-NGLSP-NWNTYASLLRAYGR---------ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC---------- 223 (533)
Q Consensus 165 ~~~~m~~-~g~~p-~~~~~~~ll~~~~~---------~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~---------- 223 (533)
+|++.+. .|..| +...|...+....+ .|+++.|..+|++..+.........|.......
T Consensus 106 ~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~ 185 (530)
T 2ooe_A 106 AYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKK 185 (530)
T ss_dssp HHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHH
Confidence 6766654 35443 46677777776654 678889999999888732111123333221100
Q ss_pred ---HhcCCHHHH------------------------------------------------------------HHHHHHHH
Q 009506 224 ---ADVGYTDEA------------------------------------------------------------FEIFEDMK 240 (533)
Q Consensus 224 ---~~~g~~~~A------------------------------------------------------------~~~~~~m~ 240 (533)
.+.+++..| ..+|++..
T Consensus 186 ~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al 265 (530)
T 2ooe_A 186 MIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCL 265 (530)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHH
Confidence 011222333 33333333
Q ss_pred hCCCCCCCHHHHHHHHHHHHh-------cCChH-------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 009506 241 SSENCQPDSWTFSSMITICSC-------RGKVS-------EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 306 (533)
Q Consensus 241 ~~~~~~p~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 306 (533)
... +.+...|..++..+.+ .|+++ +|..+|++..+.-.+-+...|..++..+.+.|++++|..+
T Consensus 266 ~~~--p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~ 343 (530)
T 2ooe_A 266 LVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSI 343 (530)
T ss_dssp HHH--TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhC--CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHH
Confidence 321 2345555566666654 67876 7888888876522233577888888888888888888888
Q ss_pred HHHhhhCCCCCC-H-HHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHHHHH-HHHhhhhhccHHHHHHHHHhhhcc-
Q 009506 307 LNRLPELGITPD-D-RFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKL-LLEEQDIEGDFKKEATELFNSISK- 381 (533)
Q Consensus 307 ~~~m~~~g~~p~-~-~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~~a~~~~~~~~~- 381 (533)
|+++.+. .|+ . ..|..+...+.+.|+ ++|.++++...+..+........ ....+...|+. ++|..+|++...
T Consensus 344 ~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~-~~A~~~~e~al~~ 420 (530)
T 2ooe_A 344 YNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDK-SVAFKIFELGLKK 420 (530)
T ss_dssp HHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCH-HHHHHHHHHHHHH
T ss_pred HHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCCh-hHHHHHHHHHHHH
Confidence 8888874 343 2 467777777777777 88888888888766654333211 11122345665 888888886532
Q ss_pred -CccchhhHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 009506 382 -DVKKAYCNCLIDLCVNLNLLENACKLLELGLTLE 415 (533)
Q Consensus 382 -~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 415 (533)
+.+...|..++..+.+.|+.++|..+|++....+
T Consensus 421 ~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 421 YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 2356688888888888999999999999887764
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.47 E-value=2.8e-11 Score=119.57 Aligned_cols=246 Identities=11% Similarity=0.108 Sum_probs=201.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 009506 143 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY-GEDTLSVYREMKEKGMQLSVTLYNTLLA 221 (533)
Q Consensus 143 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~-~~~a~~~~~~m~~~g~~~~~~~~~~li~ 221 (533)
...|+.+..++.+.|++++|++.|++.++.. +-+..+|+.+..+|.+.|+ +++|+..|++..+.... +...|+.+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 4567778888899999999999999999864 4467899999999999997 99999999999998665 7889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCh
Q 009506 222 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK-AQRT 300 (533)
Q Consensus 222 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~ 300 (533)
++...|++++|+..|+++.+.. +-+...|..+..++.+.|++++|...|+++.+.. +-+...|+.+..+|.+ .|..
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld--P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD--AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHccCHHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcc
Confidence 9999999999999999999875 5689999999999999999999999999998864 2468889999999998 6666
Q ss_pred hHH-----HHHHHHhhhCCCCC-CHHHHHHHHHHHhcCC--h-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhc-----
Q 009506 301 DDV-----VRALNRLPELGITP-DDRFCGCLLNVMTQTP--K-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEG----- 366 (533)
Q Consensus 301 ~~a-----~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~--~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----- 366 (533)
++| +..|++..+.. | +...|..+...+...| + +++...+..+ +.+++....+..++..|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~--P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLV--PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhccccc
Confidence 887 47888887753 4 4557888888888888 4 7888888877 777877777788888887764
Q ss_pred ---cHHHHHHHHHhhh-c-cCcc-chhhHHHHHHHH
Q 009506 367 ---DFKKEATELFNSI-S-KDVK-KAYCNCLIDLCV 396 (533)
Q Consensus 367 ---~~~~~a~~~~~~~-~-~~~~-~~~~~~li~~~~ 396 (533)
+..++|.++|+++ . .+|. ...|..+...+.
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 3348899999988 3 3443 336666655544
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=3.5e-12 Score=119.94 Aligned_cols=186 Identities=8% Similarity=-0.063 Sum_probs=122.6
Q ss_pred HcCChHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 009506 120 TAGNFDGCLNVYEEMKAIGVK---PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGED 196 (533)
Q Consensus 120 ~~g~~~~A~~~~~~m~~~g~~---pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 196 (533)
..|++++|+..|+++.+.... .+..+|..+...+...|++++|+..|+++.+.. +.+..++..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 456778888888887765321 135567777777778888888888888777653 3456777777777777888888
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009506 197 TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 276 (533)
Q Consensus 197 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 276 (533)
|...|++..+.... +..++..+...|.+.|++++|.+.|+++.+. .|+.......+..+...|++++|...+++..
T Consensus 96 A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 96 AYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 88888777775433 5667777777777777777777777777664 3433344444445566677777777776655
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 009506 277 EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 312 (533)
Q Consensus 277 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 312 (533)
... +++...+ .++..+...++.++|...+.+..+
T Consensus 172 ~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~ 205 (275)
T 1xnf_A 172 EKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADAT 205 (275)
T ss_dssp HHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCC
T ss_pred hcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhc
Confidence 532 2233333 355556666666777777666654
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=4.4e-12 Score=119.27 Aligned_cols=223 Identities=8% Similarity=-0.073 Sum_probs=162.3
Q ss_pred chhhhhHHhhHHHHHhhcCC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH
Q 009506 85 PRASKLKEKSYDTRARNEKW---RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ 161 (533)
Q Consensus 85 ~~~~~~~~~~l~~~~~~~g~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~ 161 (533)
.......+...+..+.+... ..+..+|..+...|...|++++|+..|+++.+.. +.+..+|..+...+...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 34444567777777776542 1256778888888888899999999998887753 3367888888888888999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009506 162 VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 241 (533)
Q Consensus 162 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 241 (533)
|++.|++..+.. +.+..++..+...|.+.|++++|...|+++.+.. |+.......+..+...|++++|...+++...
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 999998888753 3457788888888888999999999998888764 3333444445555667888999988877666
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCC
Q 009506 242 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE---PNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 314 (533)
Q Consensus 242 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 314 (533)
.. +++...+. ++..+...++.++|.+.+.+..+.... .+...+..+...|.+.|++++|...|++..+..
T Consensus 173 ~~--~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 173 KS--DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp HS--CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cC--CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 43 34444443 677777788888888888876543210 014677778888888888888888888887653
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.45 E-value=3.2e-10 Score=117.79 Aligned_cols=317 Identities=12% Similarity=0.078 Sum_probs=224.8
Q ss_pred hHHhhHHHHHhhcCCCCCHHHHHHHHHHH-HHcCChHHHHH----HHHHHHH-CCCCC-CHHHHHHHHHHHHh-------
Q 009506 90 LKEKSYDTRARNEKWRIDPNAFSTLIKLY-GTAGNFDGCLN----VYEEMKA-IGVKP-NMITYNNLLDTMGR------- 155 (533)
Q Consensus 90 ~~~~~l~~~~~~~g~~~~~~~~~~li~~~-~~~g~~~~A~~----~~~~m~~-~g~~p-d~~~~~~li~~~~~------- 155 (533)
..++.++.+..... |++..|...+... ...|++++|.+ +|++... .|..| +...|...+....+
T Consensus 63 ~~a~~~~~ral~~~--p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~ 140 (530)
T 2ooe_A 63 DKVEKLFQRCLMKV--LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSY 140 (530)
T ss_dssp HHHHHHHHHHTTTC--CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSST
T ss_pred HHHHHHHHHHHhcC--CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccH
Confidence 35677888887654 6888888888644 45688877765 7777654 35443 56788888877655
Q ss_pred --cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH-------------HhcCChH-------------------------
Q 009506 156 --AKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY-------------GRARYGE------------------------- 195 (533)
Q Consensus 156 --~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~-------------~~~g~~~------------------------- 195 (533)
.|++++|..+|++.++.........|....... .+.++++
T Consensus 141 ~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p 220 (530)
T 2ooe_A 141 AENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPP 220 (530)
T ss_dssp THHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCC
T ss_pred HHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCC
Confidence 688999999999998731111123333221100 0011122
Q ss_pred -----------------------------------HHHHHHHHHHHcCCCcCHHHHHHHHHHHHh-------cCCHH---
Q 009506 196 -----------------------------------DTLSVYREMKEKGMQLSVTLYNTLLAMCAD-------VGYTD--- 230 (533)
Q Consensus 196 -----------------------------------~a~~~~~~m~~~g~~~~~~~~~~li~~~~~-------~g~~~--- 230 (533)
.+..+|++...... -+...|..+...+.+ .|+++
T Consensus 221 ~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p-~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~ 299 (530)
T 2ooe_A 221 QNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAK 299 (530)
T ss_dssp C--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTTCCHHHH
T ss_pred CCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhchhhhhccchhhhh
Confidence 33344444444321 255666666666665 68876
Q ss_pred ----HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChhHHH
Q 009506 231 ----EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN--LFVLTSLIQCYGKAQRTDDVV 304 (533)
Q Consensus 231 ----~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~ 304 (533)
+|.++|++..+.- .+.+...|..++..+.+.|++++|..+|+++.+. .|+ ...|..++..+.+.|++++|.
T Consensus 300 ~~~~~A~~~~~~Al~~~-~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~ 376 (530)
T 2ooe_A 300 LFSDEAANIYERAISTL-LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGR 376 (530)
T ss_dssp HHHHHHHHHHHHHTTTT-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHH
Confidence 8999999988632 1456889999999999999999999999999884 454 358999999999999999999
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHH-HhcCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhccC
Q 009506 305 RALNRLPELGITPDDRFCGCLLNV-MTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKD 382 (533)
Q Consensus 305 ~~~~~m~~~g~~p~~~~~~~ll~~-~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~~~ 382 (533)
.+|++..+..-. +...+...... +...|+ ++|.++++...+..|+...++..++..+.+.|+. ++|..+|++....
T Consensus 377 ~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~-~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 377 MIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNED-NNTRVLFERVLTS 454 (530)
T ss_dssp HHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCH-HHHHHHHHHHHHS
T ss_pred HHHHHHHhccCC-chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCH-hhHHHHHHHHHhc
Confidence 999999875321 22233222222 234677 9999999999998898888888888888888987 9999999987532
Q ss_pred -c-c----chhhHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 009506 383 -V-K----KAYCNCLIDLCVNLNLLENACKLLELGLTL 414 (533)
Q Consensus 383 -~-~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 414 (533)
+ + ...|...+....+.|+.+.+..+++++.+.
T Consensus 455 ~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 455 GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp CCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1 2 338989999999999999999999988654
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=2e-10 Score=108.14 Aligned_cols=228 Identities=14% Similarity=0.062 Sum_probs=162.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCcCHHHHH
Q 009506 142 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR----ARYGEDTLSVYREMKEKGMQLSVTLYN 217 (533)
Q Consensus 142 d~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~ 217 (533)
+..++..+...+...|++++|++.|++..+. -+...+..+...|.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 5667777778888888888888888888873 355677778888888 888888888888887775 677777
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 009506 218 TLLAMCAD----VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC----RGKVSEAEAMFNEMLEAGFEPNLFVLTS 289 (533)
Q Consensus 218 ~li~~~~~----~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 289 (533)
.+...|.. .+++++|++.|++..+.+ +...+..+...|.. .+++++|.+.|++..+.+ +...+..
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 151 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK----YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTI 151 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC----CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHH
Confidence 78888888 888888888888877643 56777778888887 888888888888877754 5666777
Q ss_pred HHHHHHh----cCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCChhHHHHHHHHhhhhh
Q 009506 290 LIQCYGK----AQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIE 365 (533)
Q Consensus 290 li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 365 (533)
+...|.. .+++++|...|++..+.+ +...+..+...+.. .....
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~-----------------------------g~~~~ 199 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHH-----------------------------GEGAT 199 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH-----------------------------TCSSC
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHc-----------------------------CCCCC
Confidence 7777776 778888888888776654 33344444444433 00003
Q ss_pred ccHHHHHHHHHhhhccCccchhhHHHHHHHHh----cCCHHHHHHHHHHHHhcc
Q 009506 366 GDFKKEATELFNSISKDVKKAYCNCLIDLCVN----LNLLENACKLLELGLTLE 415 (533)
Q Consensus 366 g~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g 415 (533)
++. ++|...|++.....+...+..+...|.+ .++.++|.+.|++..+.|
T Consensus 200 ~~~-~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 200 KNF-KEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp CCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred ccH-HHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 444 5566666555443445566677777777 788888888888877665
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.1e-10 Score=107.56 Aligned_cols=228 Identities=11% Similarity=-0.023 Sum_probs=112.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC--HHHHHHHHHHHHh
Q 009506 184 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD--SWTFSSMITICSC 261 (533)
Q Consensus 184 ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~--~~~~~~li~~~~~ 261 (533)
....+...|++++|+..|++..+.... +...+..+...|...|++++|++.|++..+... .++ ...|..+...|..
T Consensus 9 ~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~~lg~~~~~ 86 (272)
T 3u4t_A 9 YADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVN-ATKAKSADFEYYGKILMK 86 (272)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSC-TTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccC-chhHHHHHHHHHHHHHHH
Confidence 334444455555555555554443222 233444444455555555555555555444211 111 2234555555555
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHH-HHHhcCChHHHHHH
Q 009506 262 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL-NVMTQTPKEELGKL 340 (533)
Q Consensus 262 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll-~~~~~~~~~~a~~~ 340 (533)
.|++++|.+.|++..+.. +.+...+..+...|...|++++|...|++..+.. ..+...+..+. ..+.....++|.+.
T Consensus 87 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 87 KGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555544432 1233445555555555555555555555554431 11233333333 33332211555555
Q ss_pred HHHHHhcCCChhHHHHHHHHhhhhhcc---H------HHHHHHHHhhhccCc---cchhhHHHHHHHHhcCCHHHHHHHH
Q 009506 341 VECVEKSNSKLGYVVKLLLEEQDIEGD---F------KKEATELFNSISKDV---KKAYCNCLIDLCVNLNLLENACKLL 408 (533)
Q Consensus 341 ~~~~~~~~~~~~~~~~~l~~~~~~~g~---~------~~~a~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~ 408 (533)
++.+.+..|+.......++..+...|+ . .+++.++........ ....|..+...|.+.|++++|.+.+
T Consensus 165 ~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 244 (272)
T 3u4t_A 165 FVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAW 244 (272)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 555555555544443444444444343 1 233333332222210 1247888999999999999999999
Q ss_pred HHHHhcc
Q 009506 409 ELGLTLE 415 (533)
Q Consensus 409 ~~m~~~g 415 (533)
++..+..
T Consensus 245 ~~al~~~ 251 (272)
T 3u4t_A 245 KNILALD 251 (272)
T ss_dssp HHHHHHC
T ss_pred HHHHhcC
Confidence 9987654
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.4e-11 Score=123.29 Aligned_cols=278 Identities=12% Similarity=-0.013 Sum_probs=190.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-H----HHHHHHHHHHHhcCChhHHHHHHHHHHHC----CC-CC
Q 009506 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN-M----ITYNNLLDTMGRAKRPWQVKTIYKEMTDN----GL-SP 176 (533)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~p 176 (533)
....+..+...+.+.|++++|+..|+++.+.. |+ . ..|..+...|...|++++|+..|++..+. +- ..
T Consensus 47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 124 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG 124 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchH
Confidence 45556677788899999999999999998753 43 3 47888889999999999999999988753 11 22
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----C-CCcCHHHHHHHHHHHHhcCC-----------------HHHHHH
Q 009506 177 NWNTYASLLRAYGRARYGEDTLSVYREMKEK----G-MQLSVTLYNTLLAMCADVGY-----------------TDEAFE 234 (533)
Q Consensus 177 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----g-~~~~~~~~~~li~~~~~~g~-----------------~~~A~~ 234 (533)
...++..+...|...|++++|...|++..+. + ......++..+...|...|+ +++|++
T Consensus 125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~ 204 (411)
T 4a1s_A 125 EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVE 204 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHH
Confidence 3467888888999999999999999887653 1 11235577888888999999 899998
Q ss_pred HHHHHHhC----CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCChhHHHH
Q 009506 235 IFEDMKSS----ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF-EPN----LFVLTSLIQCYGKAQRTDDVVR 305 (533)
Q Consensus 235 ~~~~m~~~----~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~a~~ 305 (533)
.+++..+. +.......++..+...|...|++++|.+.|++..+..- ..+ ...+..+...|...|++++|..
T Consensus 205 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 284 (411)
T 4a1s_A 205 FYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAE 284 (411)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 88776442 11011345777888888899999999999888765210 112 2367777888888888888888
Q ss_pred HHHHhhhCCCC-CC----HHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhh
Q 009506 306 ALNRLPELGIT-PD----DRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI 379 (533)
Q Consensus 306 ~~~~m~~~g~~-p~----~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~ 379 (533)
.|++..+.... .+ ..++..+...+...|+ ++|...++.... +....
T Consensus 285 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~----------------------------~~~~~ 336 (411)
T 4a1s_A 285 HYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLA----------------------------IAQEL 336 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----------------------------HHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----------------------------HHHHC
Confidence 88876543110 01 1234444444444444 444443333221 11111
Q ss_pred cc-CccchhhHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 009506 380 SK-DVKKAYCNCLIDLCVNLNLLENACKLLELGLTL 414 (533)
Q Consensus 380 ~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 414 (533)
.. ......+..+...|.+.|++++|...+++..+.
T Consensus 337 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 337 GDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 11 012337778999999999999999999987544
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.36 E-value=6.5e-10 Score=106.79 Aligned_cols=221 Identities=11% Similarity=0.077 Sum_probs=169.9
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-------hcCCh-------hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 009506 125 DGCLNVYEEMKAIGVKPNMITYNNLLDTMG-------RAKRP-------WQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 190 (533)
Q Consensus 125 ~~A~~~~~~m~~~g~~pd~~~~~~li~~~~-------~~g~~-------~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 190 (533)
++|+.+|++..... +-+...|..+...+. +.|++ ++|..+|++..+.--+-+...|..+...+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 68888999887642 346778888877775 35876 8999999999873123456789999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCcCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH-hcCChHHH
Q 009506 191 ARYGEDTLSVYREMKEKGMQLSVT-LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS-CRGKVSEA 268 (533)
Q Consensus 191 ~g~~~~a~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~-~~g~~~~A 268 (533)
.|++++|..+|++..+.... +.. +|..+...+.+.|++++|.++|++..+.. +.+...|........ ..|++++|
T Consensus 112 ~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST--TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999885332 333 78889999999999999999999988764 344455554433322 36999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCC-CCC--CHHHHHHHHHHHhcCCh-HHHHHHHHHH
Q 009506 269 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG-ITP--DDRFCGCLLNVMTQTPK-EELGKLVECV 344 (533)
Q Consensus 269 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p--~~~~~~~ll~~~~~~~~-~~a~~~~~~~ 344 (533)
.++|++..+.. +-+...|..++..+.+.|+.++|..+|++..+.. +.| ....|..++....+.|+ +++..+++.+
T Consensus 189 ~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999987642 2367888889999999999999999999998863 455 35678888888888888 8888888887
Q ss_pred HhcCCC
Q 009506 345 EKSNSK 350 (533)
Q Consensus 345 ~~~~~~ 350 (533)
.+..|+
T Consensus 268 ~~~~p~ 273 (308)
T 2ond_A 268 FTAFRE 273 (308)
T ss_dssp HHHTTT
T ss_pred HHHccc
Confidence 777665
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.35 E-value=2.6e-10 Score=100.34 Aligned_cols=166 Identities=18% Similarity=0.153 Sum_probs=117.2
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009506 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 186 (533)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 186 (533)
++.+|..+...|.+.|++++|++.|++..+.. +-+..+|..+..++.+.|++++|+..++...... +-+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 56677778888888888888888888776642 2356677777777777788888877777776643 345566666677
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChH
Q 009506 187 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 266 (533)
Q Consensus 187 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 266 (533)
.+...++++.+...+.+..+.... +...+..+...|.+.|++++|++.|++..+.. +.+..+|..+..+|.+.|+++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK--PGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc--chhhhHHHHHHHHHHHCCCHH
Confidence 777777777777777777665433 56667777777777777777777777766653 445667777777777777777
Q ss_pred HHHHHHHHHHH
Q 009506 267 EAEAMFNEMLE 277 (533)
Q Consensus 267 ~A~~~~~~m~~ 277 (533)
+|.+.|++..+
T Consensus 159 ~A~~~~~~al~ 169 (184)
T 3vtx_A 159 EAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 77777777665
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.7e-11 Score=121.25 Aligned_cols=259 Identities=15% Similarity=0.042 Sum_probs=187.9
Q ss_pred HHhhHHHHHhhcCCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHhcCChhH
Q 009506 91 KEKSYDTRARNEKWRIDP----NAFSTLIKLYGTAGNFDGCLNVYEEMKAI----GV-KPNMITYNNLLDTMGRAKRPWQ 161 (533)
Q Consensus 91 ~~~~l~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~pd~~~~~~li~~~~~~g~~~~ 161 (533)
.+..++.++.+.... +. .+|..+...|...|++++|+..|++..+. +. .....+|..+...|...|++++
T Consensus 66 ~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 144 (411)
T 4a1s_A 66 AGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDE 144 (411)
T ss_dssp HHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHH
Confidence 456666666665322 33 57889999999999999999999998653 11 2234678888899999999999
Q ss_pred HHHHHHHHHHC----C-CCCCHHHHHHHHHHHHhcCC-----------------hHHHHHHHHHHHHc----CCC-cCHH
Q 009506 162 VKTIYKEMTDN----G-LSPNWNTYASLLRAYGRARY-----------------GEDTLSVYREMKEK----GMQ-LSVT 214 (533)
Q Consensus 162 a~~~~~~m~~~----g-~~p~~~~~~~ll~~~~~~g~-----------------~~~a~~~~~~m~~~----g~~-~~~~ 214 (533)
|+..|++..+. + ......++..+...|...|+ +++|++.+++..+. +.. ....
T Consensus 145 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 224 (411)
T 4a1s_A 145 AAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGR 224 (411)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999988753 1 11234578888999999999 99999999887552 211 1345
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CC----CHH
Q 009506 215 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD----SWTFSSMITICSCRGKVSEAEAMFNEMLEAGF-EP----NLF 285 (533)
Q Consensus 215 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p----~~~ 285 (533)
++..+...|...|++++|++.|++..+...-..+ ...+..+...|...|++++|.+.|++..+..- .. ...
T Consensus 225 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 304 (411)
T 4a1s_A 225 ACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQ 304 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 7888889999999999999999887653210112 34788999999999999999999998765310 01 156
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhC----CCCCC-HHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCC
Q 009506 286 VLTSLIQCYGKAQRTDDVVRALNRLPEL----GITPD-DRFCGCLLNVMTQTPK-EELGKLVECVEKSNSK 350 (533)
Q Consensus 286 ~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~ 350 (533)
++..+...|...|++++|...|++..+. +..+. ..++..+...+...|+ ++|.+.++...+....
T Consensus 305 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 305 SCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 7888899999999999999999998653 11111 2255556666666666 6666666665554443
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=4.4e-11 Score=114.42 Aligned_cols=242 Identities=12% Similarity=0.054 Sum_probs=170.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC------C
Q 009506 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI-------GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN------G 173 (533)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g 173 (533)
+..++..+...|...|++++|+.+|+++.+. .......++..+...+...|++++|+..|++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4667889999999999999999999998762 22334567888999999999999999999998753 2
Q ss_pred C-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc------CC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---
Q 009506 174 L-SPNWNTYASLLRAYGRARYGEDTLSVYREMKEK------GM-QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS--- 242 (533)
Q Consensus 174 ~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~------g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--- 242 (533)
- .....++..+...|...|++++|...|++..+. +. ......+..+...|...|++++|+++|++....
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1 233568889999999999999999999988764 22 224567888899999999999999999988764
Q ss_pred ---CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-------CCCCC-------HHHHHHHHHHHHhcCChhHHHH
Q 009506 243 ---ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA-------GFEPN-------LFVLTSLIQCYGKAQRTDDVVR 305 (533)
Q Consensus 243 ---~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~-------~~~~~~li~~~~~~g~~~~a~~ 305 (533)
+.......++..+...|...|++++|.+.|+++.+. ...+. ...+..+...+...+.+.++..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 210224567889999999999999999999998752 11111 1223333334445556666666
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCC
Q 009506 306 ALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNS 349 (533)
Q Consensus 306 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~ 349 (533)
.+....... ..+..++..+..+|.+.|+ ++|.++++...+..+
T Consensus 266 ~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 266 WYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp --------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred HHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 666655421 1233477788888888888 888888887766543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.33 E-value=1.3e-09 Score=119.45 Aligned_cols=255 Identities=15% Similarity=0.088 Sum_probs=144.2
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 009506 120 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 199 (533)
Q Consensus 120 ~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 199 (533)
..|++++|.++.++. -+..+|..+..++...|++++|++.|.+. -|...|..++.+|.+.|++++|.+
T Consensus 1088 ~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIe 1155 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 1155 (1630)
T ss_pred HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHH
Confidence 445555555555543 12445555555555555555555555332 344455555555555555555555
Q ss_pred HHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 009506 200 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 279 (533)
Q Consensus 200 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 279 (533)
.|...++.. ++....+.++.+|++.+++++...+. . .++...|..+...|...|++++|..+|...
T Consensus 1156 yL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~----~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---- 1221 (1630)
T 1xi4_A 1156 YLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 1221 (1630)
T ss_pred HHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h----CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh----
Confidence 555444432 12222223555555555554322221 1 233344444555555555555555555442
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC------------------------CCCCCHHHHHHHHHHHhcCCh-
Q 009506 280 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL------------------------GITPDDRFCGCLLNVMTQTPK- 334 (533)
Q Consensus 280 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------------------------g~~p~~~~~~~ll~~~~~~~~- 334 (533)
..|..+..+|.+.|++++|.+.+++.... ++..+...+..++..|.+.|.
T Consensus 1222 -----~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~f 1296 (1630)
T 1xi4_A 1222 -----SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYF 1296 (1630)
T ss_pred -----hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCH
Confidence 24445555555555555555444433111 133455667788899999999
Q ss_pred HHHHHHHHHHHhcCCChhHHHHHHHHhhhh--hccHHHHHHHHHhh-hccCc------cchhhHHHHHHHHhcCCHHHHH
Q 009506 335 EELGKLVECVEKSNSKLGYVVKLLLEEQDI--EGDFKKEATELFNS-ISKDV------KKAYCNCLIDLCVNLNLLENAC 405 (533)
Q Consensus 335 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~~a~~~~~~-~~~~~------~~~~~~~li~~~~~~g~~~~A~ 405 (533)
+++..+++.....++....+.+-|+..|.+ .+++ .++.++|.+ +..++ +...|..++-.|.+.|+++.|.
T Consensus 1297 eEAI~LlE~aL~LeraH~gmftELaiLyaKy~pekl-mEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1297 EELITMLEAALGLERAHMGMFTELAILYSKFKPQKM-REHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHH-HHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 999999999888887776676666665554 4555 555555544 33222 3458999999999999999998
Q ss_pred H
Q 009506 406 K 406 (533)
Q Consensus 406 ~ 406 (533)
.
T Consensus 1376 ~ 1376 (1630)
T 1xi4_A 1376 I 1376 (1630)
T ss_pred H
Confidence 4
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.32 E-value=3.3e-10 Score=112.43 Aligned_cols=294 Identities=8% Similarity=-0.043 Sum_probs=207.2
Q ss_pred HHcCChHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHHH--hcCChhHHH-----------HHHHHHHHCCCCCCHHH-
Q 009506 119 GTAGNFDGCLNVYEEMKAI--GVKPN--MITYNNLLDTMG--RAKRPWQVK-----------TIYKEMTDNGLSPNWNT- 180 (533)
Q Consensus 119 ~~~g~~~~A~~~~~~m~~~--g~~pd--~~~~~~li~~~~--~~g~~~~a~-----------~~~~~m~~~g~~p~~~~- 180 (533)
.+.+++++|..+++++.+. .++.| ...|-.++..-. -.+..+.+. +.++.+.... .+...
T Consensus 23 i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~~~ 100 (383)
T 3ulq_A 23 IRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLTGL 100 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCchhH
Confidence 5789999999999998653 23233 344444443211 223333344 6666665421 11111
Q ss_pred -----HHHHHHHHHhcCChHHHHHHHHHHHHc----CCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---
Q 009506 181 -----YASLLRAYGRARYGEDTLSVYREMKEK----GMQL-SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP--- 247 (533)
Q Consensus 181 -----~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p--- 247 (533)
+......+...|++++|...|++..+. +-.+ ...+|..+...|...|++++|.+.+++..+...-.+
T Consensus 101 l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 180 (383)
T 3ulq_A 101 LEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYN 180 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccch
Confidence 222556677899999999999998764 2122 346788899999999999999999988765311011
Q ss_pred --CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCChhHHHHHHHHhhhC----CCC
Q 009506 248 --DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF-EPN----LFVLTSLIQCYGKAQRTDDVVRALNRLPEL----GIT 316 (533)
Q Consensus 248 --~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~ 316 (533)
...+++.+...|...|++++|.+.|++..+..- .++ ..++..+...|...|++++|...|++..+. +..
T Consensus 181 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 260 (383)
T 3ulq_A 181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNIL 260 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccc
Confidence 246788999999999999999999998765210 122 247888999999999999999999998762 332
Q ss_pred C-CHHHHHHHHHHHhcCCh-HHHHHHHHHHHhc-----CCChhHHHHHHHHhhhhhcc--HHHHHHHHHhhhccCcc-ch
Q 009506 317 P-DDRFCGCLLNVMTQTPK-EELGKLVECVEKS-----NSKLGYVVKLLLEEQDIEGD--FKKEATELFNSISKDVK-KA 386 (533)
Q Consensus 317 p-~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~--~~~~a~~~~~~~~~~~~-~~ 386 (533)
| ...++..+...+...|+ ++|...++..... ++........+...+...|+ ..++|+.++++....++ ..
T Consensus 261 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~ 340 (383)
T 3ulq_A 261 PSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLED 340 (383)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHH
Confidence 3 34578889999999999 9999988876654 22222334667788887776 23889999988865333 33
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 009506 387 YCNCLIDLCVNLNLLENACKLLELGLTL 414 (533)
Q Consensus 387 ~~~~li~~~~~~g~~~~A~~l~~~m~~~ 414 (533)
.+..+...|.+.|++++|...+++..+.
T Consensus 341 ~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 341 FAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 7788999999999999999999988643
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=5.2e-11 Score=118.63 Aligned_cols=295 Identities=12% Similarity=-0.007 Sum_probs=209.5
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCC
Q 009506 105 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN----MITYNNLLDTMGRAKRPWQVKTIYKEMTDN----GLSP 176 (533)
Q Consensus 105 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p 176 (533)
......+..+...+.+.|++++|+..|++..+... .+ ...|..+...+...|++++|...|++..+. +-.|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 34566777888899999999999999999987532 23 357888899999999999999999987542 2112
Q ss_pred -CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCC-cCHHHHHHHHHHHHhcCC--------------------HH
Q 009506 177 -NWNTYASLLRAYGRARYGEDTLSVYREMKEK----GMQ-LSVTLYNTLLAMCADVGY--------------------TD 230 (533)
Q Consensus 177 -~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~-~~~~~~~~li~~~~~~g~--------------------~~ 230 (533)
...++..+...|...|++++|...+++..+. +-. ....++..+...|...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 2457888899999999999999999887653 111 114578888899999999 99
Q ss_pred HHHHHHHHHHhC----CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCC----HHHHHHHHHHHHhcCChh
Q 009506 231 EAFEIFEDMKSS----ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG-FEPN----LFVLTSLIQCYGKAQRTD 301 (533)
Q Consensus 231 ~A~~~~~~m~~~----~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~----~~~~~~li~~~~~~g~~~ 301 (533)
+|.+.+++.... +.......++..+...|...|++++|.+.+++..+.. -.++ ..++..+...|...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 999998775432 2101134578889999999999999999999876521 0122 347888889999999999
Q ss_pred HHHHHHHHhhhC----CCCCC-HHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCCh------hHHHHHHHHhhhhhccHH
Q 009506 302 DVVRALNRLPEL----GITPD-DRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKL------GYVVKLLLEEQDIEGDFK 369 (533)
Q Consensus 302 ~a~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~ 369 (533)
+|...+++..+. +..+. ..++..+...+...|+ ++|...++......+.. ......++..|...|+.
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~- 323 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNH- 323 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH-
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCH-
Confidence 999999987643 11111 3467778888888888 88888887765432221 22335667777777776
Q ss_pred HHHHHHHhhhcc----Cc----cchhhHHHHHHHHhcCCH
Q 009506 370 KEATELFNSISK----DV----KKAYCNCLIDLCVNLNLL 401 (533)
Q Consensus 370 ~~a~~~~~~~~~----~~----~~~~~~~li~~~~~~g~~ 401 (533)
++|...|++... .. ...++..+...|...|+.
T Consensus 324 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 324 DQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 777777766432 11 122455555566555554
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=4.5e-11 Score=119.09 Aligned_cols=273 Identities=15% Similarity=0.052 Sum_probs=206.3
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCc
Q 009506 140 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN----WNTYASLLRAYGRARYGEDTLSVYREMKEK----GMQL 211 (533)
Q Consensus 140 ~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~~ 211 (533)
......+......+...|++++|+..|++..+.+ +.+ ..++..+...|...|++++|...+++..+. +-.+
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 3556677778888999999999999999999863 223 357888999999999999999999987543 2222
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHhcCC--------------------hH
Q 009506 212 -SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD----SWTFSSMITICSCRGK--------------------VS 266 (533)
Q Consensus 212 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~--------------------~~ 266 (533)
...++..+...|...|++++|.+.+++......-..+ ..++..+...|...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 2567888889999999999999999877653100112 4578899999999999 99
Q ss_pred HHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCC-CCC----HHHHHHHHHHHhcCCh-H
Q 009506 267 EAEAMFNEMLEA----GFEP-NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI-TPD----DRFCGCLLNVMTQTPK-E 335 (533)
Q Consensus 267 ~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~~~-~ 335 (533)
+|.+.+.+..+. +..+ ...++..+...|...|++++|...|++..+... .++ ..++..+...+...|+ +
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 999999886542 2111 245688888999999999999999999765311 122 2277788888999999 9
Q ss_pred HHHHHHHHHHhcCCCh------hHHHHHHHHhhhhhccHHHHHHHHHhhhcc----Ccc----chhhHHHHHHHHhcCCH
Q 009506 336 ELGKLVECVEKSNSKL------GYVVKLLLEEQDIEGDFKKEATELFNSISK----DVK----KAYCNCLIDLCVNLNLL 401 (533)
Q Consensus 336 ~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~~a~~~~~~~~~----~~~----~~~~~~li~~~~~~g~~ 401 (533)
+|...++......+.. ......++..+...|+. ++|...|++... ..+ ..++..+...|.+.|++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 323 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDY-EKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNH 323 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 9999888766533222 23336778888888987 899988887542 111 34788899999999999
Q ss_pred HHHHHHHHHHHhc
Q 009506 402 ENACKLLELGLTL 414 (533)
Q Consensus 402 ~~A~~l~~~m~~~ 414 (533)
++|...+++..+.
T Consensus 324 ~~A~~~~~~al~~ 336 (406)
T 3sf4_A 324 DQAMHFAEKHLEI 336 (406)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987644
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.32 E-value=5e-10 Score=98.48 Aligned_cols=167 Identities=12% Similarity=0.092 Sum_probs=141.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 009506 142 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 221 (533)
Q Consensus 142 d~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 221 (533)
+..+|..+...|.+.|++++|++.|++.++.. +-+..++..+...|.+.|++++|...+......... +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence 66788899999999999999999999988764 446788889999999999999999999988877554 6777888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh
Q 009506 222 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 301 (533)
Q Consensus 222 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 301 (533)
.+...++++.|.+.+++..... +.+...+..+...|.+.|++++|.+.|++..+.. +-+..+|..+..+|.+.|+++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN--TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHH
Confidence 8899999999999998887764 5578888889999999999999999999887753 345778888999999999999
Q ss_pred HHHHHHHHhhhC
Q 009506 302 DVVRALNRLPEL 313 (533)
Q Consensus 302 ~a~~~~~~m~~~ 313 (533)
+|...|++..+.
T Consensus 159 ~A~~~~~~al~~ 170 (184)
T 3vtx_A 159 EAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC
Confidence 999999988764
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.31 E-value=5.2e-11 Score=114.88 Aligned_cols=277 Identities=11% Similarity=0.029 Sum_probs=181.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCC-CHH
Q 009506 109 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN----MITYNNLLDTMGRAKRPWQVKTIYKEMTDN----GLSP-NWN 179 (533)
Q Consensus 109 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~ 179 (533)
..+......+.+.|++++|+..|+++.+... .+ ...|..+...+...|++++|++.+++..+. +-.+ ...
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 3455566778889999999999999887531 23 367788888899999999999999887642 1111 245
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-cC----HHHHHHHHHHHHhcCC--------------------HHHHHH
Q 009506 180 TYASLLRAYGRARYGEDTLSVYREMKEKGMQ-LS----VTLYNTLLAMCADVGY--------------------TDEAFE 234 (533)
Q Consensus 180 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-~~----~~~~~~li~~~~~~g~--------------------~~~A~~ 234 (533)
++..+...|...|++++|...+++..+.... .+ ..++..+...|...|+ +++|.+
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 7778888888999999999988887653110 12 3477778888888888 888888
Q ss_pred HHHHHHhC----CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCChhHHHH
Q 009506 235 IFEDMKSS----ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF-EPN----LFVLTSLIQCYGKAQRTDDVVR 305 (533)
Q Consensus 235 ~~~~m~~~----~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~a~~ 305 (533)
.+++.... +........+..+...|...|++++|.+.+++..+... .++ ..++..+...|...|++++|..
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 88776432 11011245677788888888888888888888654210 011 2367777778888888888888
Q ss_pred HHHHhhhCCCC-CC----HHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhh
Q 009506 306 ALNRLPELGIT-PD----DRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI 379 (533)
Q Consensus 306 ~~~~m~~~g~~-p~----~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~ 379 (533)
.+++..+.... .+ ..++..+...+...|+ ++|...++.... ++...
T Consensus 245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~----------------------------~~~~~ 296 (338)
T 3ro2_A 245 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA----------------------------IAQEL 296 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----------------------------HHHHH
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH----------------------------HHHhc
Confidence 88876542100 11 1233334444444444 444443332211 11111
Q ss_pred ccC-ccchhhHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 009506 380 SKD-VKKAYCNCLIDLCVNLNLLENACKLLELGLTL 414 (533)
Q Consensus 380 ~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 414 (533)
... ....++..+...|.+.|++++|...+++..+.
T Consensus 297 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 297 KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 110 11336778899999999999999999988654
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=8.6e-10 Score=112.49 Aligned_cols=291 Identities=12% Similarity=-0.008 Sum_probs=194.5
Q ss_pred CHHHHHHHHHHHHHc--CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHH---HHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 009506 107 DPNAFSTLIKLYGTA--GNFDGCLNVYEEMKAIGVKPN-MITYNNLLDT---MGRAKRPWQVKTIYKEMTDNGLSPNWNT 180 (533)
Q Consensus 107 ~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~pd-~~~~~~li~~---~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 180 (533)
.+.+|+.+..++.+. +++++|++.|++..+. .|+ ...+..+..+ +...++.++|++.|++..+.. +.+..+
T Consensus 135 ~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~ 211 (472)
T 4g1t_A 135 SPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYL 211 (472)
T ss_dssp CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHH
T ss_pred hHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHH
Confidence 467777777777665 4799999999999874 354 4455555444 445678889999999888754 345666
Q ss_pred HHHHHHHHHh----cCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHH
Q 009506 181 YASLLRAYGR----ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 256 (533)
Q Consensus 181 ~~~ll~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li 256 (533)
+..+...+.. .+++++|.+++++..+.... +..++..+...|...|++++|.+.|++..+.. +.+..++..+.
T Consensus 212 ~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg 288 (472)
T 4g1t_A 212 KVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYI--PNNAYLHCQIG 288 (472)
T ss_dssp HHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC--CChHHHHHHHH
Confidence 7666655554 46788999999998887544 77889999999999999999999999988764 45677777776
Q ss_pred HHHHhc-------------------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCC
Q 009506 257 TICSCR-------------------GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 317 (533)
Q Consensus 257 ~~~~~~-------------------g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 317 (533)
..|... +.++.|...|++..+.. +.+...+..+...|...|++++|...|++..+....+
T Consensus 289 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~ 367 (472)
T 4g1t_A 289 CCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTP 367 (472)
T ss_dssp HHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCC
Confidence 665432 23567777787776643 2345667888999999999999999999998765443
Q ss_pred CHH--HHHHHHH-HHhcCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhh-cc-CccchhhHHH
Q 009506 318 DDR--FCGCLLN-VMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI-SK-DVKKAYCNCL 391 (533)
Q Consensus 318 ~~~--~~~~ll~-~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~-~~-~~~~~~~~~l 391 (533)
... .+..+.. ...+.|+ ++|...+....+..|+.......+ ..+..++++. .. +.+..+|+.|
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~-----------~~l~~~~~~~l~~~p~~~~~~~~L 436 (472)
T 4g1t_A 368 VAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMK-----------DKLQKIAKMRLSKNGADSEALHVL 436 (472)
T ss_dssp HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHH-----------HHHHHHHHHHHHHCC-CTTHHHHH
T ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHH-----------HHHHHHHHHHHHhCCCCHHHHHHH
Confidence 322 2222222 2335666 899999999988888754332211 2333333332 22 3356799999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcc
Q 009506 392 IDLCVNLNLLENACKLLELGLTLE 415 (533)
Q Consensus 392 i~~~~~~g~~~~A~~l~~~m~~~g 415 (533)
...|...|++++|++.|++.++.+
T Consensus 437 G~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 437 AFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHHHHCC-------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC
Confidence 999999999999999999988765
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.29 E-value=1.9e-09 Score=103.46 Aligned_cols=217 Identities=15% Similarity=0.134 Sum_probs=175.4
Q ss_pred HHhhHHHHHhhcCCCCCHHHHHHHHHHHHH-------cCCh-------HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 009506 91 KEKSYDTRARNEKWRIDPNAFSTLIKLYGT-------AGNF-------DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA 156 (533)
Q Consensus 91 ~~~~l~~~~~~~g~~~~~~~~~~li~~~~~-------~g~~-------~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~ 156 (533)
++..++.+.... ..-++..|..++..+.. .|++ ++|+.+|++..+.-.+-+...|..+...+.+.
T Consensus 34 ~a~~~~~~al~~-~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 34 RVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 455666666653 24578888888888763 5886 99999999998731233567899999999999
Q ss_pred CChhHHHHHHHHHHHCCCCCC-HH-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH-hcCCHHHHH
Q 009506 157 KRPWQVKTIYKEMTDNGLSPN-WN-TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA-DVGYTDEAF 233 (533)
Q Consensus 157 g~~~~a~~~~~~m~~~g~~p~-~~-~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~-~~g~~~~A~ 233 (533)
|++++|.++|++..+. .|+ .. +|..+...+.+.|++++|..+|++..+.... +...|........ ..|++++|.
T Consensus 113 ~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHH
T ss_pred CCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999984 454 33 8999999999999999999999999987543 4555554443322 379999999
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCC--CHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 009506 234 EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG-FEP--NLFVLTSLIQCYGKAQRTDDVVRALNRL 310 (533)
Q Consensus 234 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m 310 (533)
++|++..+.. +.+...|..++..+.+.|++++|..+|++..... +.| ....|..++..+.+.|+.+.|..+++++
T Consensus 190 ~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 190 KIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999988754 4578899999999999999999999999998863 455 4678999999999999999999999998
Q ss_pred hhC
Q 009506 311 PEL 313 (533)
Q Consensus 311 ~~~ 313 (533)
.+.
T Consensus 268 ~~~ 270 (308)
T 2ond_A 268 FTA 270 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.28 E-value=8e-11 Score=113.60 Aligned_cols=221 Identities=13% Similarity=0.021 Sum_probs=166.5
Q ss_pred HHhhHHHHHhhcCCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChhH
Q 009506 91 KEKSYDTRARNEKWRID----PNAFSTLIKLYGTAGNFDGCLNVYEEMKAI----GVKP-NMITYNNLLDTMGRAKRPWQ 161 (533)
Q Consensus 91 ~~~~l~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-d~~~~~~li~~~~~~g~~~~ 161 (533)
.+..++.++.+.... + ...|..+...|...|++++|++.|++..+. +..+ ...++..+...+...|++++
T Consensus 23 ~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 101 (338)
T 3ro2_A 23 AGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDE 101 (338)
T ss_dssp HHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHH
Confidence 466677777765322 3 467889999999999999999999987542 1111 25678888899999999999
Q ss_pred HHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCC--------------------hHHHHHHHHHHHHc----CCC-c
Q 009506 162 VKTIYKEMTDNGL-SPN----WNTYASLLRAYGRARY--------------------GEDTLSVYREMKEK----GMQ-L 211 (533)
Q Consensus 162 a~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~--------------------~~~a~~~~~~m~~~----g~~-~ 211 (533)
|...+++..+..- .++ ..++..+...|...|+ +++|.+.+++..+. +.. .
T Consensus 102 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~ 181 (338)
T 3ro2_A 102 AIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAA 181 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 9999998764210 122 3478888999999999 99999999876542 211 1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC---
Q 009506 212 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP----DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF-EPN--- 283 (533)
Q Consensus 212 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~--- 283 (533)
...++..+...|...|++++|.+.+++..+...-.+ ...++..+...|...|++++|.+.+++..+..- ..+
T Consensus 182 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 261 (338)
T 3ro2_A 182 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV 261 (338)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhH
Confidence 245788888999999999999999988764310011 234788899999999999999999998765210 112
Q ss_pred -HHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 009506 284 -LFVLTSLIQCYGKAQRTDDVVRALNRLPE 312 (533)
Q Consensus 284 -~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 312 (533)
..++..+...|...|++++|...+++..+
T Consensus 262 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 291 (338)
T 3ro2_A 262 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 291 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 56778888999999999999999998765
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.9e-11 Score=115.65 Aligned_cols=246 Identities=14% Similarity=0.102 Sum_probs=168.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc------C
Q 009506 142 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDN-------GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK------G 208 (533)
Q Consensus 142 d~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~------g 208 (533)
+..++..+...+...|++++|+.+|+++.+. .......++..+...|...|++++|...+++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4567888999999999999999999999863 22334577888999999999999999999988764 2
Q ss_pred C-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc---
Q 009506 209 M-QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS------ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA--- 278 (533)
Q Consensus 209 ~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--- 278 (533)
- .....++..+...|...|++++|.+.|++..+. +........+..+...|...|++++|.++|+++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 2 224677888999999999999999999887764 210224667888999999999999999999998763
Q ss_pred ---CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhhCC-------CCCCHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 009506 279 ---GFEP-NLFVLTSLIQCYGKAQRTDDVVRALNRLPELG-------ITPDDRFCGCLLNVMTQTPKEELGKLVECVEKS 347 (533)
Q Consensus 279 ---g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-------~~p~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~ 347 (533)
+..| ...++..+...|...|++++|..+|+++.+.. ..+...........+...
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 250 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREEC--------------- 250 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC---------------
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHh---------------
Confidence 2122 24578888999999999999999999987531 111111111111111111
Q ss_pred CCChhHHHHHHHHhhhhhccHHHHHHHHHhhhcc--CccchhhHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 009506 348 NSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK--DVKKAYCNCLIDLCVNLNLLENACKLLELGLTL 414 (533)
Q Consensus 348 ~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 414 (533)
...+...+.. .++...++.... .....+|..+..+|.+.|++++|.+.|++..+.
T Consensus 251 -----------~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 251 -----------KGKQKDGTSF-GEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp ------------------CCS-CCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -----------cCchhhHHHH-HHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 1111111222 334444444432 123457888999999999999999999987653
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.26 E-value=6e-10 Score=113.88 Aligned_cols=214 Identities=7% Similarity=-0.072 Sum_probs=125.5
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009506 159 PWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG-EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 237 (533)
Q Consensus 159 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~-~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 237 (533)
+++++..+++..... +.+...+..+...|...|++ ++|++.|++..+.... +...|..+...|.+.|++++|++.|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344444555444322 23555666666666666666 6666666666655332 45566666666666666666666666
Q ss_pred HHHhCCCCCCCHHHHHHHHHHHHhc---------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--------CCh
Q 009506 238 DMKSSENCQPDSWTFSSMITICSCR---------GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA--------QRT 300 (533)
Q Consensus 238 ~m~~~~~~~p~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~--------g~~ 300 (533)
+..+. .|+...+..+...|... |++++|.+.|++..+.. +-+...|..+..+|... |++
T Consensus 162 ~al~~---~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 162 GALTH---CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHTT---CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHhh---CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 66653 34456666666666666 66666666666665532 22355666666666665 666
Q ss_pred hHHHHHHHHhhhCCCC--CCHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHh
Q 009506 301 DDVVRALNRLPELGIT--PDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFN 377 (533)
Q Consensus 301 ~~a~~~~~~m~~~g~~--p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~ 377 (533)
++|+..|++..+.... -+...+..+..++...|+ ++|.+.++...+..|+.......+...+...|+. ++|.+.+.
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~-~eAi~~~~ 316 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRL-TSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH-HHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH-HHHHHHhc
Confidence 6666666666554210 245566666666666666 6666666666666666655555666666666654 66666555
Q ss_pred hh
Q 009506 378 SI 379 (533)
Q Consensus 378 ~~ 379 (533)
++
T Consensus 317 ~~ 318 (474)
T 4abn_A 317 KT 318 (474)
T ss_dssp TC
T ss_pred cc
Confidence 44
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.26 E-value=3.8e-10 Score=115.36 Aligned_cols=212 Identities=5% Similarity=-0.058 Sum_probs=151.4
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 009506 123 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP-WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 201 (533)
Q Consensus 123 ~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 201 (533)
.+++++..+++..... +.+...|..+..++...|++ ++|++.|++..+.. +-+..+|..+...|.+.|++++|.+.|
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4667777777665532 23667777777778888888 88888888877653 334677788888888888888888888
Q ss_pred HHHHHcCCCcCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--------CC
Q 009506 202 REMKEKGMQLSVTLYNTLLAMCADV---------GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR--------GK 264 (533)
Q Consensus 202 ~~m~~~g~~~~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~--------g~ 264 (533)
++..+.. |+...+..+...|... |++++|++.|++..+.. +.+...|..+..+|... |+
T Consensus 161 ~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 161 SGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--VLDGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHhhccccch
Confidence 8877664 4567777777777777 88888888888777654 45677777787787777 77
Q ss_pred hHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHH
Q 009506 265 VSEAEAMFNEMLEAGFE---PNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKL 340 (533)
Q Consensus 265 ~~~A~~~~~~m~~~g~~---p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~ 340 (533)
+++|.+.|++..+.. + -+...|..+..+|...|++++|.+.|++..+..- -+...+..+..++...|+ ++|.+.
T Consensus 237 ~~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 237 SQQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP-AWPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888877642 1 2677777888888888888888888888766531 134466666677776666 666654
Q ss_pred HH
Q 009506 341 VE 342 (533)
Q Consensus 341 ~~ 342 (533)
+.
T Consensus 315 ~~ 316 (474)
T 4abn_A 315 KG 316 (474)
T ss_dssp TT
T ss_pred hc
Confidence 43
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.25 E-value=7.7e-10 Score=96.68 Aligned_cols=164 Identities=12% Similarity=0.036 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009506 109 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 188 (533)
Q Consensus 109 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 188 (533)
..|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+..++..+...|
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 456667777777888888888887776532 2356677777777777777777777777777643 34566677777777
Q ss_pred HhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHH
Q 009506 189 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 268 (533)
Q Consensus 189 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 268 (533)
...|++++|.+.++++.+.... +...+..+...+...|++++|.+.+++..+.. +.+...+..+...|...|++++|
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPI-NFNVRFRLGVALDNLGRFDEAIDSFKIALGLR--PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcH-hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHcCCHHHH
Confidence 7777777777777776665332 55666666667777777777777776666543 34566666666667777777777
Q ss_pred HHHHHHHHH
Q 009506 269 EAMFNEMLE 277 (533)
Q Consensus 269 ~~~~~~m~~ 277 (533)
.+.+++..+
T Consensus 164 ~~~~~~~~~ 172 (186)
T 3as5_A 164 LPHFKKANE 172 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 776666554
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.4e-09 Score=107.75 Aligned_cols=308 Identities=8% Similarity=-0.048 Sum_probs=211.7
Q ss_pred CCCHHHHHHHHHHH--HHcCChHHHHHHHHHHHHC--CCC--CCHHHHHHHHHHH--HhcCChhHHH---------HHHH
Q 009506 105 RIDPNAFSTLIKLY--GTAGNFDGCLNVYEEMKAI--GVK--PNMITYNNLLDTM--GRAKRPWQVK---------TIYK 167 (533)
Q Consensus 105 ~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~--g~~--pd~~~~~~li~~~--~~~g~~~~a~---------~~~~ 167 (533)
.|+..+-+.|-..| .+.+++++|.++++++... .++ .+...|-.|+..- .-.+....+. +.++
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence 45566666677777 7899999999999998653 222 2344445554431 1112222222 5666
Q ss_pred HHHHCCCCCCH-H---HHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-c----CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009506 168 EMTDNGLSPNW-N---TYASLLRAYGRARYGEDTLSVYREMKEKGMQ-L----SVTLYNTLLAMCADVGYTDEAFEIFED 238 (533)
Q Consensus 168 ~m~~~g~~p~~-~---~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-~----~~~~~~~li~~~~~~g~~~~A~~~~~~ 238 (533)
.+.......+. . .+-.....+...|++++|...|++..+.-.. + ...++..+...|...|++++|.+.+++
T Consensus 87 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~ 166 (378)
T 3q15_A 87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166 (378)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 65432111111 1 1223344567889999999999998764111 1 256788888999999999999999987
Q ss_pred HHhCCCCCC-----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHH
Q 009506 239 MKSSENCQP-----DSWTFSSMITICSCRGKVSEAEAMFNEMLEA----GFEP-NLFVLTSLIQCYGKAQRTDDVVRALN 308 (533)
Q Consensus 239 m~~~~~~~p-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~ 308 (533)
..+...-.+ ...+++.+...|...|++++|.+.|++..+. +-.+ ...++..+..+|...|++++|...|+
T Consensus 167 al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~ 246 (378)
T 3q15_A 167 ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQ 246 (378)
T ss_dssp HHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 654211011 2567889999999999999999999987652 1111 13567888899999999999999999
Q ss_pred Hhhh-----CCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHhc-----CCChhHHHHHHHHhhhhhcc--HHHHHHHH
Q 009506 309 RLPE-----LGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKS-----NSKLGYVVKLLLEEQDIEGD--FKKEATEL 375 (533)
Q Consensus 309 ~m~~-----~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~--~~~~a~~~ 375 (533)
+..+ .. .....++..+...+.+.|+ ++|...++..... ++........+...+...++ ..++|+.+
T Consensus 247 ~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~ 325 (378)
T 3q15_A 247 KAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSY 325 (378)
T ss_dssp HHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 9876 32 2225678888999999999 9999999988765 33333444666667766665 13888888
Q ss_pred HhhhccCcc-chhhHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009506 376 FNSISKDVK-KAYCNCLIDLCVNLNLLENACKLLELGLT 413 (533)
Q Consensus 376 ~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 413 (533)
+++....++ ...+..+...|.+.|++++|...|++..+
T Consensus 326 ~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 326 FEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888654332 23677899999999999999999998753
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.21 E-value=1.4e-09 Score=94.91 Aligned_cols=165 Identities=14% Similarity=0.080 Sum_probs=137.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 009506 144 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 223 (533)
Q Consensus 144 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 223 (533)
..|..+...+...|++++|++.|+++.+.. +.+..++..+...|...|++++|...++++.+.... +...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD-NVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHH
Confidence 456777788889999999999998887653 456788888999999999999999999998877433 677888888899
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHH
Q 009506 224 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 303 (533)
Q Consensus 224 ~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 303 (533)
...|++++|.+.|+++.... +.+...+..+...|...|++++|.+.+++..+.. +.+...+..+...|...|++++|
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN--PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC--cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999887764 5678888888999999999999999999887753 34577888888899999999999
Q ss_pred HHHHHHhhhC
Q 009506 304 VRALNRLPEL 313 (533)
Q Consensus 304 ~~~~~~m~~~ 313 (533)
...+++..+.
T Consensus 164 ~~~~~~~~~~ 173 (186)
T 3as5_A 164 LPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 9998887653
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.16 E-value=2.5e-08 Score=98.30 Aligned_cols=234 Identities=7% Similarity=-0.058 Sum_probs=159.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCH----HHH
Q 009506 111 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI----TYNNLLDTMGRAKRPWQVKTIYKEMTDNGL-SPNW----NTY 181 (533)
Q Consensus 111 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~----~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~----~~~ 181 (533)
+..+...+...|++++|+..+++.....-..+.. +++.+...+...|++++|.+.+++..+..- ..+. .++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3445556678999999999999987753222332 466677788899999999999998774210 1222 346
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHc----CCC--c-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-C-CC-CHHH
Q 009506 182 ASLLRAYGRARYGEDTLSVYREMKEK----GMQ--L-SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN-C-QP-DSWT 251 (533)
Q Consensus 182 ~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~-~p-~~~~ 251 (533)
..+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|.+.+++...... . .+ ...+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 67788889999999999999887653 222 2 345667788889999999999999988765321 0 11 2456
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHH----HHHHHHHhcCChhHHHHHHHHhhhCCCCCC---HHHH
Q 009506 252 FSSMITICSCRGKVSEAEAMFNEMLEAGFEPN--LFVLT----SLIQCYGKAQRTDDVVRALNRLPELGITPD---DRFC 322 (533)
Q Consensus 252 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~----~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~ 322 (533)
|..+...+...|++++|...+++.....-.++ ..... ..+..+...|+.++|...+++..+....+. ...+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 78888999999999999999998765311111 11111 233457789999999999999876432211 2234
Q ss_pred HHHHHHHhcCCh-HHHHHHHHHH
Q 009506 323 GCLLNVMTQTPK-EELGKLVECV 344 (533)
Q Consensus 323 ~~ll~~~~~~~~-~~a~~~~~~~ 344 (533)
..+...+...|+ ++|...++..
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a 279 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEEL 279 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Confidence 455566666666 6666655543
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=2.1e-09 Score=114.65 Aligned_cols=166 Identities=10% Similarity=0.132 Sum_probs=144.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009506 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 186 (533)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 186 (533)
++..|+.|...|.+.|++++|++.|++..+.. +-+..+|+.|..+|.+.|++++|++.|++.++.. +-+...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 46789999999999999999999999988742 2357889999999999999999999999998854 345789999999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChH
Q 009506 187 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 266 (533)
Q Consensus 187 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 266 (533)
+|.+.|++++|++.|++..+.... +...|+.+...|.+.|++++|++.|++..+.. +-+...|..+...|...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~--P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK--PDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHhhhhhHHHhcccHH
Confidence 999999999999999999887554 78899999999999999999999999988764 456888999999999999999
Q ss_pred HHHHHHHHHHH
Q 009506 267 EAEAMFNEMLE 277 (533)
Q Consensus 267 ~A~~~~~~m~~ 277 (533)
+|.+.+++..+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999888754
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.15 E-value=4.5e-08 Score=107.46 Aligned_cols=277 Identities=12% Similarity=0.071 Sum_probs=191.8
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009506 106 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 185 (533)
Q Consensus 106 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 185 (533)
-++.+|..+..++.+.|++++|++.|.+. -|...|..++.+|.+.|++++|++.|...++.. ++....+.++
T Consensus 1103 n~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~La 1174 (1630)
T 1xi4_A 1103 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELI 1174 (1630)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHH
Confidence 35888999999999999999999999664 577889999999999999999999998777643 4444445588
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCh
Q 009506 186 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 265 (533)
Q Consensus 186 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 265 (533)
.+|++.+++++..... + .++...|..+...|...|++++|..+|... ..|..+...|.+.|++
T Consensus 1175 faYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA----------~ny~rLA~tLvkLge~ 1237 (1630)
T 1xi4_A 1175 FALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------SNFGRLASTLVHLGEY 1237 (1630)
T ss_pred HHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh----------hHHHHHHHHHHHhCCH
Confidence 8888888887544332 2 235566667778888888888888888764 2577777777777777
Q ss_pred HHHHHHHHHHHH------------------------cCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHH
Q 009506 266 SEAEAMFNEMLE------------------------AGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 321 (533)
Q Consensus 266 ~~A~~~~~~m~~------------------------~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 321 (533)
++|.+.+++... .++..+...+..++..|.+.|.+++|+.+++...... .-....
T Consensus 1238 q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gm 1316 (1630)
T 1xi4_A 1238 QAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGM 1316 (1630)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHH
Confidence 777777655321 0122355667788899999999999999998776543 223347
Q ss_pred HHHHHHHHhcCCh---HHHHHHHHHHHhcCC-----ChhHHHHHHHHhhhhhccHHHHHHHH-------------Hhh-h
Q 009506 322 CGCLLNVMTQTPK---EELGKLVECVEKSNS-----KLGYVVKLLLEEQDIEGDFKKEATEL-------------FNS-I 379 (533)
Q Consensus 322 ~~~ll~~~~~~~~---~~a~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~~a~~~-------------~~~-~ 379 (533)
|+.+..++++... .++.++|..-....+ .....+.-++..|.+.|++ +.|... |+. +
T Consensus 1317 ftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~-dnA~~tm~~h~~~a~~~~~Fk~~i 1395 (1630)
T 1xi4_A 1317 FTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEY-DNAIITMMNHPTDAWKEGQFKDII 1395 (1630)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccH-HHHHHHHHhccHhhhhhHHHHHHh
Confidence 7778888887766 444444443222222 2223345566677777777 666522 211 1
Q ss_pred ccCccchhhHHHHHHHHhcC---------------CHHHHHHHHH
Q 009506 380 SKDVKKAYCNCLIDLCVNLN---------------LLENACKLLE 409 (533)
Q Consensus 380 ~~~~~~~~~~~li~~~~~~g---------------~~~~A~~l~~ 409 (533)
....+...|--.+..|...+ +.+++.++|.
T Consensus 1396 ~kv~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1396 TKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred cccccHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHH
Confidence 22345556767777777666 6777777666
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.14 E-value=5.8e-10 Score=104.78 Aligned_cols=221 Identities=11% Similarity=0.054 Sum_probs=131.6
Q ss_pred HHhhHHHHHhhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC------CC-CCCHHHHHHHHHHHHhcCChhHHH
Q 009506 91 KEKSYDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI------GV-KPNMITYNNLLDTMGRAKRPWQVK 163 (533)
Q Consensus 91 ~~~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~-~pd~~~~~~li~~~~~~g~~~~a~ 163 (533)
.+..+...+..........++..+...|...|++++|+..|++..+. +- .....+|+.+...|...|++++|+
T Consensus 26 ~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 105 (283)
T 3edt_B 26 QALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAE 105 (283)
T ss_dssp HHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHH
Confidence 44555555444343445677888888888888888888888887653 11 123456777778888888888888
Q ss_pred HHHHHHHHC------C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCc-CHHHHHHHHHHHHhcCCH
Q 009506 164 TIYKEMTDN------G-LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK------GMQL-SVTLYNTLLAMCADVGYT 229 (533)
Q Consensus 164 ~~~~~m~~~------g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~------g~~~-~~~~~~~li~~~~~~g~~ 229 (533)
+.|++..+. . .+....++..+...|...|++++|...|++..+. +-.| ...++..+...|...|++
T Consensus 106 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 185 (283)
T 3edt_B 106 PLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKY 185 (283)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCH
Confidence 888877653 1 1223466777777888888888888888777654 1122 345677777778888888
Q ss_pred HHHHHHHHHHHhC------CCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHH----cC--CCCCHHHHHHHHHHHHh
Q 009506 230 DEAFEIFEDMKSS------ENCQP-DSWTFSSMITICSCRGKVSEAEAMFNEMLE----AG--FEPNLFVLTSLIQCYGK 296 (533)
Q Consensus 230 ~~A~~~~~~m~~~------~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g--~~p~~~~~~~li~~~~~ 296 (533)
++|.+.|++..+. +...+ ....|..+...+...+....+..+ ..+.. .+ .+....++..+...|..
T Consensus 186 ~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 264 (283)
T 3edt_B 186 QDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPY-GEYGSWYKACKVDSPTVNTTLRSLGALYRR 264 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-------------CCCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHH-HHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 8888888776642 00012 222333333333333332222221 11111 01 11124456677777777
Q ss_pred cCChhHHHHHHHHhhh
Q 009506 297 AQRTDDVVRALNRLPE 312 (533)
Q Consensus 297 ~g~~~~a~~~~~~m~~ 312 (533)
.|++++|..+|++..+
T Consensus 265 ~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 265 QGKLEAAHTLEDCASR 280 (283)
T ss_dssp TTCHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHH
Confidence 8888888877777654
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=3.2e-09 Score=113.23 Aligned_cols=166 Identities=13% Similarity=0.090 Sum_probs=148.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 009506 142 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 221 (533)
Q Consensus 142 d~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 221 (533)
+...|+.|-.++.+.|++++|++.|++.++.. +-+..+|+.|..+|.+.|++++|++.|++..+.... +...|+.+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 46789999999999999999999999999853 345789999999999999999999999999987654 6889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh
Q 009506 222 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 301 (533)
Q Consensus 222 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 301 (533)
.|.+.|++++|++.|++..+.. +-+...|+.+..+|.+.|++++|.+.|++..+.. +-+...|..+..+|...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~--P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN--PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHH
Confidence 9999999999999999988864 4578899999999999999999999999988853 235788999999999999999
Q ss_pred HHHHHHHHhhh
Q 009506 302 DVVRALNRLPE 312 (533)
Q Consensus 302 ~a~~~~~~m~~ 312 (533)
+|.+.+++..+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988764
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.2e-08 Score=92.96 Aligned_cols=201 Identities=13% Similarity=0.077 Sum_probs=155.9
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009506 106 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 185 (533)
Q Consensus 106 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 185 (533)
.|+..|......|.+.|++++|+..|++..+....++...+..+..++...|++++|++.|++..+.. +-+..++..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 46788899999999999999999999999886543688888889999999999999999999999864 33567899999
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCcCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--CHHHHHHHH
Q 009506 186 RAYGRARYGEDTLSVYREMKEKGMQLSV-------TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP--DSWTFSSMI 256 (533)
Q Consensus 186 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p--~~~~~~~li 256 (533)
..|.+.|++++|+..|++..+.... +. ..|..+...+...|++++|++.|++..+.. +. +...|..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT--SKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS--CHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC--CCcccHHHHHHHH
Confidence 9999999999999999999887543 44 557888888999999999999999998753 33 457777888
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHH
Q 009506 257 TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 320 (533)
Q Consensus 257 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 320 (533)
..|...| ..+++++...+ ..+...|..+.. ...+.+++|...|++..+.. |+..
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~~--~~~~~~~~A~~~~~~a~~l~--p~~~ 214 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLA-SSNKEKYASEKA--KADAAFKKAVDYLGEAVTLS--PNRT 214 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHC--TTCH
T ss_pred HHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHHH--HHHHHHHHHHHHHHHHhhcC--CCCH
Confidence 8876544 34445544432 233444444432 34566899999999988753 5544
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.11 E-value=9.5e-09 Score=104.27 Aligned_cols=291 Identities=12% Similarity=0.022 Sum_probs=191.3
Q ss_pred CHHHHHHHHHHHHHcC-----ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh---HHHHHHHHHHHCCCCCCH
Q 009506 107 DPNAFSTLIKLYGTAG-----NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW---QVKTIYKEMTDNGLSPNW 178 (533)
Q Consensus 107 ~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~---~a~~~~~~m~~~g~~p~~ 178 (533)
++..+..|...+...+ ++++|+..|++..+.|.. + .+..|...|...+..+ ++.+.+......| +.
T Consensus 68 ~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~-~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~ 141 (452)
T 3e4b_A 68 SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEG-N--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YP 141 (452)
T ss_dssp ---CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCS-S--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CT
T ss_pred CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCH-H--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CH
Confidence 4555556666444444 667777777777775532 2 4555666665554433 3444444444444 23
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCCHHHHHHH
Q 009506 179 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG---YTDEAFEIFEDMKSSENCQPDSWTFSSM 255 (533)
Q Consensus 179 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~p~~~~~~~l 255 (533)
..+..|...|...+.++++......+.+.-...+...+..|...|.+.| +.++|++.|++..+.| .++...+..|
T Consensus 142 ~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g--~~~a~~~~~L 219 (452)
T 3e4b_A 142 EAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG--TVTAQRVDSV 219 (452)
T ss_dssp THHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT--CSCHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC--CHHHHHHHHH
Confidence 4555666666666655544444333332211223347788888888888 8899999999988887 5777777777
Q ss_pred HHHHHhc----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-H--HhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 009506 256 ITICSCR----GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQC-Y--GKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV 328 (533)
Q Consensus 256 i~~~~~~----g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~-~--~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 328 (533)
...|... +++++|.+.|++.. . -+...+..|-.. | ...++.++|+.+|++..+.| +...+..|-..
T Consensus 220 g~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~ 292 (452)
T 3e4b_A 220 ARVLGDATLGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKL 292 (452)
T ss_dssp HHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHH
Confidence 7777665 78999999998876 3 355566666665 3 46889999999999988877 56666666666
Q ss_pred HhcC----Ch-HHHHHHHHHHHhcCCChhHHHHHHHHhhhh----hccHHHHHHHHHhhhccCccchhhHHHHHHHHh--
Q 009506 329 MTQT----PK-EELGKLVECVEKSNSKLGYVVKLLLEEQDI----EGDFKKEATELFNSISKDVKKAYCNCLIDLCVN-- 397 (533)
Q Consensus 329 ~~~~----~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~-- 397 (533)
|... .+ ++|.++++... +........|+..|.. ..+. ++|...|++.-...+...+..|...|..
T Consensus 293 y~~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~-~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~ 368 (452)
T 3e4b_A 293 YYEGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYP-QKALDHLLTAARNGQNSADFAIAQLFSQGK 368 (452)
T ss_dssp HHHCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCH-HHHHHHHHHHHTTTCTTHHHHHHHHHHSCT
T ss_pred HHcCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCH-HHHHHHHHHHHhhChHHHHHHHHHHHHhCC
Confidence 6632 14 88888888766 4444444566666554 2255 8899999888777777777778887775
Q ss_pred --cCCHHHHHHHHHHHHhccc
Q 009506 398 --LNLLENACKLLELGLTLEV 416 (533)
Q Consensus 398 --~g~~~~A~~l~~~m~~~g~ 416 (533)
..+.++|...|+...+.|.
T Consensus 369 g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 369 GTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp TBCCCHHHHHHHHHHHHTTCC
T ss_pred CCCCCHHHHHHHHHHHHHCCC
Confidence 4578999999998887774
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.06 E-value=6.3e-09 Score=105.59 Aligned_cols=299 Identities=13% Similarity=0.047 Sum_probs=188.1
Q ss_pred hHHhhHHHHHhhcCCCCCHHHHHHHHHHHHHcCCh---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----ChhH
Q 009506 90 LKEKSYDTRARNEKWRIDPNAFSTLIKLYGTAGNF---DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK-----RPWQ 161 (533)
Q Consensus 90 ~~~~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g-----~~~~ 161 (533)
..+..++.+..+.| ++..+..|...|...|+. ++|++.|++..+. +...+..|...+...+ ++++
T Consensus 20 ~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~~~~~~~~ 92 (452)
T 3e4b_A 20 VTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPGATEAEHHE 92 (452)
T ss_dssp HHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHTC--CCHHHHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCCCCcCHHH
Confidence 34566666666655 344455666667667777 8888888888753 5555666666555554 6778
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH---HHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC----HHHHHH
Q 009506 162 VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGE---DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY----TDEAFE 234 (533)
Q Consensus 162 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~---~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~----~~~A~~ 234 (533)
|++.|++..+.|. ++ .+..|...|...+..+ ++.+.+....+.| +...+..|...|...+. .+++..
T Consensus 93 A~~~~~~Aa~~g~-~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~ 166 (452)
T 3e4b_A 93 AESLLKKAFANGE-GN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVER 166 (452)
T ss_dssp HHHHHHHHHHTTC-SS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHH
T ss_pred HHHHHHHHHHCCC-HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHH
Confidence 9999988888763 22 5666777776655443 3455555555554 34456667777777774 445555
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----CChhHHHHHH
Q 009506 235 IFEDMKSSENCQPDSWTFSSMITICSCRG---KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA----QRTDDVVRAL 307 (533)
Q Consensus 235 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~----g~~~~a~~~~ 307 (533)
+++.... + .|+ .+..|...|.+.| +.++|.+.|++..+.| .++...+..|...|... ++.++|+.+|
T Consensus 167 ~~~~a~~-~--~~~--a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~ 240 (452)
T 3e4b_A 167 ICKAALN-T--TDI--CYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALL 240 (452)
T ss_dssp HHHHHTT-T--CTT--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHH
T ss_pred HHHHHHc-C--CHH--HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHH
Confidence 5554433 2 233 8888999999999 9999999999998877 35666656677777554 7999999999
Q ss_pred HHhhhCCCCCCHHHHHHHHHH-H--hcCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhc-----cHHHHHHHHHhh
Q 009506 308 NRLPELGITPDDRFCGCLLNV-M--TQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEG-----DFKKEATELFNS 378 (533)
Q Consensus 308 ~~m~~~g~~p~~~~~~~ll~~-~--~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~~a~~~~~~ 378 (533)
++.. .| +...+..|-.. + ...++ ++|.++++...+.+. ......|+..|. .| +. ++|...|++
T Consensus 241 ~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~--~~A~~~Lg~~y~-~G~g~~~d~-~~A~~~~~~ 312 (452)
T 3e4b_A 241 EKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQ--PRAELLLGKLYY-EGKWVPADA-KAAEAHFEK 312 (452)
T ss_dssp HHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHH-HCSSSCCCH-HHHHHHHHT
T ss_pred HHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHH-cCCCCCCCH-HHHHHHHHH
Confidence 9987 43 44455555555 3 34556 999999998887662 333355666665 34 65 999999999
Q ss_pred hccCccchhhHHHHHHHHh----cCCHHHHHHHHHHHHhccc
Q 009506 379 ISKDVKKAYCNCLIDLCVN----LNLLENACKLLELGLTLEV 416 (533)
Q Consensus 379 ~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~ 416 (533)
.. ..+...+..|...|.. ..+.++|...|++..+.|.
T Consensus 313 Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 313 AV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ 353 (452)
T ss_dssp TT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred Hh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh
Confidence 88 7777888888888877 3489999999999887764
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.04 E-value=2.9e-08 Score=90.34 Aligned_cols=208 Identities=9% Similarity=-0.028 Sum_probs=161.4
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHH
Q 009506 141 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 220 (533)
Q Consensus 141 pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 220 (533)
.|...|......+...|++++|+..|++..+..-.++...+..+..+|.+.|++++|++.|++..+.... +...|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 4667888899999999999999999999998653378888888999999999999999999999987554 678899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCCH-------HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---HHHHHHH
Q 009506 221 AMCADVGYTDEAFEIFEDMKSSENCQPDS-------WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN---LFVLTSL 290 (533)
Q Consensus 221 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~l 290 (533)
..|...|++++|++.|++..+.. +.+. ..|..+...+...|++++|.+.|++..+. .|+ ...|..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l 159 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHH
Confidence 99999999999999999988754 3445 56888888999999999999999998774 355 4667777
Q ss_pred HHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHHHHHHHHh
Q 009506 291 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEE 361 (533)
Q Consensus 291 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~ 361 (533)
..+|...| ..+++++...+. .+...+..... ...+. ++|...++...+..|+.......+...
T Consensus 160 ~~~~~~~~-----~~~~~~a~~~~~-~~~~~~~~~~~--~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 160 GVLFYNNG-----ADVLRKATPLAS-SNKEKYASEKA--KADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHHH-----HHHHHHHGGGTT-TCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHHHhccc-CCHHHHHHHHH--HHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 77775544 344555554432 23344433332 22344 889999999999999988776666443
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.9e-08 Score=99.62 Aligned_cols=227 Identities=8% Similarity=-0.004 Sum_probs=153.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHC--CCC----CCHHHHH
Q 009506 114 LIKLYGTAGNFDGCLNVYEEMKAIGV-KPN----MITYNNLLDTMGRAKRPWQVKTIYKEMTDN--GLS----PNWNTYA 182 (533)
Q Consensus 114 li~~~~~~g~~~~A~~~~~~m~~~g~-~pd----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~----p~~~~~~ 182 (533)
....+...|++++|+..|++..+... .+| ..+|..+...|...|++++|+..+++..+. ... ....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 55566788999999999999876310 122 357888888899999999999999887742 111 1135778
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHc----CCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCCHHHH
Q 009506 183 SLLRAYGRARYGEDTLSVYREMKEK----GMQ-LSVTLYNTLLAMCADVGYTDEAFEIFEDMKS-----SENCQPDSWTF 252 (533)
Q Consensus 183 ~ll~~~~~~g~~~~a~~~~~~m~~~----g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~p~~~~~ 252 (533)
.+...|...|++++|+..|++..+. +-. ....+++.+...|...|++++|++.|++..+ ... +....++
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~ 267 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNIL-PSLPQAY 267 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCG-GGHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccc-hhHHHHH
Confidence 8888899999999999888877653 111 1134777888888899999999998887765 221 2246678
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHhhhCCCCCCH-HHHHH
Q 009506 253 SSMITICSCRGKVSEAEAMFNEMLEA----GFEPNLFVLTSLIQCYGKAQR---TDDVVRALNRLPELGITPDD-RFCGC 324 (533)
Q Consensus 253 ~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~g~~p~~-~~~~~ 324 (533)
..+...|.+.|++++|...+++..+. +-+.....+..+...|...|+ +++|+.++++. +..++. ..+..
T Consensus 268 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~ 344 (383)
T 3ulq_A 268 FLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAID 344 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHH
Confidence 88888888999999999888886542 111122335566677777777 66666666655 222222 24455
Q ss_pred HHHHHhcCCh-HHHHHHHHHH
Q 009506 325 LLNVMTQTPK-EELGKLVECV 344 (533)
Q Consensus 325 ll~~~~~~~~-~~a~~~~~~~ 344 (533)
+...+...|+ ++|...++..
T Consensus 345 la~~y~~~g~~~~A~~~~~~a 365 (383)
T 3ulq_A 345 VAKYYHERKNFQKASAYFLKV 365 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 5566666666 6666555543
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.01 E-value=4.1e-09 Score=98.85 Aligned_cols=169 Identities=15% Similarity=0.130 Sum_probs=113.5
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHC------C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC------C
Q 009506 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI------G-VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN------G 173 (533)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g-~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g 173 (533)
...+|..+...|...|++++|++.|++..+. . .+....+|..+...+...|++++|+..|++..+. +
T Consensus 84 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 163 (283)
T 3edt_B 84 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGP 163 (283)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Confidence 4667888999999999999999999988753 1 1223567888888999999999999999988764 1
Q ss_pred CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-------CCCc-CHHHHHHHHHHHHhcC------CHHHHHHHHHH
Q 009506 174 LSP-NWNTYASLLRAYGRARYGEDTLSVYREMKEK-------GMQL-SVTLYNTLLAMCADVG------YTDEAFEIFED 238 (533)
Q Consensus 174 ~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-------g~~~-~~~~~~~li~~~~~~g------~~~~A~~~~~~ 238 (533)
-.| ...++..+...|.+.|++++|...|++..+. ...+ ....|..+...+...+ .+..+...++.
T Consensus 164 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (283)
T 3edt_B 164 DDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKA 243 (283)
T ss_dssp TCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------C
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHh
Confidence 122 3467888899999999999999999988763 1111 2223333333333322 23333333333
Q ss_pred HHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 009506 239 MKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 277 (533)
Q Consensus 239 m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 277 (533)
..... +....++..+...|.+.|++++|.++|++..+
T Consensus 244 ~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 244 CKVDS--PTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp CCCCC--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cCCCC--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 22211 22456788889999999999999999988765
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.99 E-value=3.2e-08 Score=81.01 Aligned_cols=126 Identities=16% Similarity=0.209 Sum_probs=54.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 009506 111 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 190 (533)
Q Consensus 111 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 190 (533)
|..+...|.+.|++++|+.+|+++.+.. +.+...|..+...+...|++++|...|+++.+.+ +.+...+..+...+.+
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 4444455555555555555555544322 1234444444444444455555555554444332 2233344444444444
Q ss_pred cCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009506 191 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 239 (533)
Q Consensus 191 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 239 (533)
.|++++|.++++++.+.... +..++..+...+.+.|++++|.+.|+++
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~ 129 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKA 129 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 44444444444444433211 2333333444444444444444444433
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.96 E-value=4.4e-08 Score=80.20 Aligned_cols=127 Identities=15% Similarity=0.153 Sum_probs=61.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh
Q 009506 146 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 225 (533)
Q Consensus 146 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 225 (533)
|..+...+...|++++|+++|+++.+.. +.+...+..+...+...|++++|..+|+++.+.+.. +...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHH
Confidence 4445555555555555555555554432 223444455555555555555555555555444322 34444444455555
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009506 226 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 276 (533)
Q Consensus 226 ~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 276 (533)
.|++++|.+.|+++.... +.+...+..+...|.+.|++++|.+.|+++.
T Consensus 82 ~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 555555555555444432 2234444444444455555555555444443
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.93 E-value=3.3e-08 Score=94.02 Aligned_cols=175 Identities=11% Similarity=0.098 Sum_probs=109.8
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCChHHH
Q 009506 123 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN----GLSPN-WNTYASLLRAYGRARYGEDT 197 (533)
Q Consensus 123 ~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a 197 (533)
++++|...|++. ...|...|++++|++.|++..+. |-.++ ..+|+.+..+|.+.|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 366666666655 23455667777777777666532 21111 35667777777777777777
Q ss_pred HHHHHHHHHc----CCCc-CHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHhcCChHH
Q 009506 198 LSVYREMKEK----GMQL-SVTLYNTLLAMCADV-GYTDEAFEIFEDMKSSENCQPD----SWTFSSMITICSCRGKVSE 267 (533)
Q Consensus 198 ~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~ 267 (533)
+..|++..+. |-.. -..+|+.+...|... |++++|++.|++..+...-..+ ..+|..+...|.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 7777766542 1110 134677777777775 8888888888776542100001 3467777888888888888
Q ss_pred HHHHHHHHHHcCCCCCH------HHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 009506 268 AEAMFNEMLEAGFEPNL------FVLTSLIQCYGKAQRTDDVVRALNRLPE 312 (533)
Q Consensus 268 A~~~~~~m~~~g~~p~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~ 312 (533)
|...|++..+....... ..|..+..++...|++++|...|++..+
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 88888887764322111 1456667777788888888888888765
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.92 E-value=4.2e-08 Score=93.26 Aligned_cols=202 Identities=13% Similarity=0.045 Sum_probs=149.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCC-CH
Q 009506 109 NAFSTLIKLYGTAGNFDGCLNVYEEMKAI----GVKPN-MITYNNLLDTMGRAKRPWQVKTIYKEMTDN----GLSP-NW 178 (533)
Q Consensus 109 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~pd-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~ 178 (533)
..|......|...|++++|+..|++..+. |-.++ ..+|+.+..+|.+.|++++|+..|++..+. |-.. -.
T Consensus 38 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a 117 (292)
T 1qqe_A 38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGA 117 (292)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 35777788899999999999999987652 21122 468899999999999999999999988752 2111 13
Q ss_pred HHHHHHHHHHHhc-CChHHHHHHHHHHHHcCCCc-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCH---
Q 009506 179 NTYASLLRAYGRA-RYGEDTLSVYREMKEKGMQL-S----VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS--- 249 (533)
Q Consensus 179 ~~~~~ll~~~~~~-g~~~~a~~~~~~m~~~g~~~-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~--- 249 (533)
.+++.+...|... |++++|+..|++..+..... + ..+|+.+...|.+.|++++|++.|++..+...-.++.
T Consensus 118 ~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 197 (292)
T 1qqe_A 118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS 197 (292)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGG
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHH
Confidence 5788899999996 99999999999887642110 1 4578889999999999999999999988754201121
Q ss_pred --HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHH--hcCChhHHHHHHHHhhh
Q 009506 250 --WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL------FVLTSLIQCYG--KAQRTDDVVRALNRLPE 312 (533)
Q Consensus 250 --~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~~~~~li~~~~--~~g~~~~a~~~~~~m~~ 312 (533)
..|..+..++...|++++|...|++..+. .|+. ..+..++.+|. ..+++++|+..|+++..
T Consensus 198 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 198 LKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 15778888999999999999999987652 2332 23445666664 45678888888877654
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.91 E-value=1.9e-07 Score=87.76 Aligned_cols=221 Identities=9% Similarity=-0.001 Sum_probs=145.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 009506 113 TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 192 (533)
Q Consensus 113 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 192 (533)
-+.++|...|++.... .-.|....+..+.. |...+ ++..|++..+.+ .++..++..+..++...|
T Consensus 50 ~~~Rs~iAlg~~~~~~---------~~~~~~~a~~~la~-~~~~~----a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g 114 (310)
T 3mv2_B 50 YKAKTLLALGQYQSQD---------PTSKLGKVLDLYVQ-FLDTK----NIEELENLLKDK-QNSPYELYLLATAQAILG 114 (310)
T ss_dssp HHHHHHHHTTCCCCCC---------SSSTTHHHHHHHHH-HHTTT----CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCccCC---------CCCHHHHHHHHHHH-Hhccc----HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcC
Confidence 3456677677665321 12344333333333 33322 667777777655 466666678888888889
Q ss_pred ChHHHHHHHHHHHHcCC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----CHHHHHHHHHHH--Hh--c
Q 009506 193 YGEDTLSVYREMKEKGM-QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP-----DSWTFSSMITIC--SC--R 262 (533)
Q Consensus 193 ~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-----~~~~~~~li~~~--~~--~ 262 (533)
++++|++++.+..+.|. .-+...+..++..+.+.|+.+.|.+.++.|.+. .| +..+...|+.++ .. .
T Consensus 115 ~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~---~~d~~~~~d~~l~~Laea~v~l~~g~ 191 (310)
T 3mv2_B 115 DLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA---IEDTVSGDNEMILNLAESYIKFATNK 191 (310)
T ss_dssp CHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---SCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CccccccchHHHHHHHHHHHHHHhCC
Confidence 99999999888776654 226677778888889999999999999888774 45 355555555552 22 3
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCC-----C---CC-CHHHHHHHHHHHhcCC
Q 009506 263 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG-----I---TP-DDRFCGCLLNVMTQTP 333 (533)
Q Consensus 263 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-----~---~p-~~~~~~~ll~~~~~~~ 333 (533)
+++.+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+.- - .| |..+...+|......|
T Consensus 192 ~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lg 269 (310)
T 3mv2_B 192 ETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQG 269 (310)
T ss_dssp STTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhC
Confidence 3888999999998664 3554444455558888899999999888765421 0 13 3445545555555556
Q ss_pred hHHHHHHHHHHHhcCCChhHH
Q 009506 334 KEELGKLVECVEKSNSKLGYV 354 (533)
Q Consensus 334 ~~~a~~~~~~~~~~~~~~~~~ 354 (533)
+ ++.+++.++.+..|+...+
T Consensus 270 k-~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 270 L-DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp C-TTHHHHHHHHHTTCCCHHH
T ss_pred h-HHHHHHHHHHHhCCCChHH
Confidence 5 7778888888888887655
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.89 E-value=3.7e-07 Score=90.09 Aligned_cols=226 Identities=10% Similarity=-0.014 Sum_probs=148.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHC--CC---CC-CHHHHH
Q 009506 114 LIKLYGTAGNFDGCLNVYEEMKAIGV-KPN----MITYNNLLDTMGRAKRPWQVKTIYKEMTDN--GL---SP-NWNTYA 182 (533)
Q Consensus 114 li~~~~~~g~~~~A~~~~~~m~~~g~-~pd----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~---~p-~~~~~~ 182 (533)
....+...|++++|+..|++..+... .+| ..++..+...|...|+++.|+..+++..+. .. .+ ...+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 44456778999999999988875311 123 356777888888899999998888887642 11 11 245677
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHc----CCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCCHHHH
Q 009506 183 SLLRAYGRARYGEDTLSVYREMKEK----GMQ-LSVTLYNTLLAMCADVGYTDEAFEIFEDMKS-----SENCQPDSWTF 252 (533)
Q Consensus 183 ~ll~~~~~~g~~~~a~~~~~~m~~~----g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~p~~~~~ 252 (533)
.+...|...|++++|.+.|++..+. +.. ....+++.+...|...|++++|++.|++... .. +....++
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~--~~~~~~~ 264 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP--DLLPKVL 264 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG--GGHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC--hhHHHHH
Confidence 8888888889999988888876652 211 1235677788888888888888888877765 32 2336677
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHhhhCCCCCCH-HHHHH
Q 009506 253 SSMITICSCRGKVSEAEAMFNEMLEAG----FEPNLFVLTSLIQCYGKAQR---TDDVVRALNRLPELGITPDD-RFCGC 324 (533)
Q Consensus 253 ~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~g~~p~~-~~~~~ 324 (533)
..+...|.+.|++++|...+++..+.. -......+..+...|...++ +++|+.++++. +..++. ..+..
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~ 341 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARS 341 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHH
Confidence 788888888888888888888876631 11123445555556666677 66666666652 222222 24445
Q ss_pred HHHHHhcCCh-HHHHHHHHHH
Q 009506 325 LLNVMTQTPK-EELGKLVECV 344 (533)
Q Consensus 325 ll~~~~~~~~-~~a~~~~~~~ 344 (533)
+...+...|+ ++|.+.++..
T Consensus 342 la~~y~~~g~~~~A~~~~~~a 362 (378)
T 3q15_A 342 AAAVFESSCHFEQAAAFYRKV 362 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 5556666666 6666655543
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=98.84 E-value=4.8e-07 Score=88.94 Aligned_cols=266 Identities=15% Similarity=0.061 Sum_probs=178.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-cC----HHHHH
Q 009506 147 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN----TYASLLRAYGRARYGEDTLSVYREMKEKGMQ-LS----VTLYN 217 (533)
Q Consensus 147 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-~~----~~~~~ 217 (533)
......+...|++++|...+++.....-..+.. +++.+...|...|++++|...+++..+.... .+ ..+++
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 334455678899999999999988754222222 5667778888899999999999987653111 12 23456
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC----CCCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC----CCHHH
Q 009506 218 TLLAMCADVGYTDEAFEIFEDMKSS----ENCQ--P-DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE----PNLFV 286 (533)
Q Consensus 218 ~li~~~~~~g~~~~A~~~~~~m~~~----~~~~--p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----p~~~~ 286 (533)
.+...+...|++++|.+.+++.... +. . | ....+..+...|...|++++|...+++..+..-. ....+
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHL-EQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-TTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhcc-ccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 6778889999999999999887652 22 1 2 2456677888899999999999999998763211 12456
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhCCCCCC--HHHHH----HHHHHHhcCCh-HHHHHHHHHHHhcCCCh----hHHH
Q 009506 287 LTSLIQCYGKAQRTDDVVRALNRLPELGITPD--DRFCG----CLLNVMTQTPK-EELGKLVECVEKSNSKL----GYVV 355 (533)
Q Consensus 287 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~----~ll~~~~~~~~-~~a~~~~~~~~~~~~~~----~~~~ 355 (533)
+..+...+...|++++|...+++..+..-.++ ..... ..+..+...|+ +++...++......+.. ....
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 77888889999999999999998765321111 11111 22334567777 88888877766544321 1122
Q ss_pred HHHHHhhhhhccHHHHHHHHHhhhccC----c---cc-hhhHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 009506 356 KLLLEEQDIEGDFKKEATELFNSISKD----V---KK-AYCNCLIDLCVNLNLLENACKLLELGLTL 414 (533)
Q Consensus 356 ~~l~~~~~~~g~~~~~a~~~~~~~~~~----~---~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 414 (533)
..+...+...|+. ++|...++..... + +. ..+..+..+|...|+.++|...+++....
T Consensus 257 ~~la~~~~~~g~~-~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 257 RNIARAQILLGEF-EPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHHTTCH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCH-HHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4556666667766 7777777665321 1 11 25566677777888888888888876654
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.79 E-value=2.3e-07 Score=86.35 Aligned_cols=169 Identities=8% Similarity=0.039 Sum_probs=111.1
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCC--CCCCHH
Q 009506 106 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN----MITYNNLLDTMGRAKRPWQVKTIYKEMTDNG--LSPNWN 179 (533)
Q Consensus 106 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~ 179 (533)
.++..+-.+...+.+.|++++|+..|+++.+.. |+ ...+..+..++.+.|++++|+..|++..+.. -+....
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 356677778888889999999999999998753 33 5678888889999999999999999998752 112245
Q ss_pred HHHHHHHHHHh--------cCChHHHHHHHHHHHHcCCCcCHHHH-----------------HHHHHHHHhcCCHHHHHH
Q 009506 180 TYASLLRAYGR--------ARYGEDTLSVYREMKEKGMQLSVTLY-----------------NTLLAMCADVGYTDEAFE 234 (533)
Q Consensus 180 ~~~~ll~~~~~--------~g~~~~a~~~~~~m~~~g~~~~~~~~-----------------~~li~~~~~~g~~~~A~~ 234 (533)
.+..+..+|.+ .|++++|+..|+++.+.... +.... ..+...|.+.|++++|+.
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 169 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAV 169 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 67777788888 89999999999988876432 22222 233445555566666666
Q ss_pred HHHHHHhCCCCCC-CHHHHHHHHHHHHhc----------CChHHHHHHHHHHHH
Q 009506 235 IFEDMKSSENCQP-DSWTFSSMITICSCR----------GKVSEAEAMFNEMLE 277 (533)
Q Consensus 235 ~~~~m~~~~~~~p-~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~ 277 (533)
.|+++.+...-.+ ....+..+..+|... |++++|...|+++.+
T Consensus 170 ~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~ 223 (261)
T 3qky_A 170 TYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ 223 (261)
T ss_dssp HHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH
Confidence 6655554320000 123444455555443 555555555555544
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.78 E-value=3.5e-07 Score=82.05 Aligned_cols=183 Identities=12% Similarity=0.086 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009506 109 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM-ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 187 (533)
Q Consensus 109 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 187 (533)
..+-.....+.+.|++++|+..|++..+. .|+. ..|.. ....... .......+.+..+
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~-----~~~~~~~--------------~~~~~~~~~lg~~ 63 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYW-----TNVDKNS--------------EISSKLATELALA 63 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHH-----HHSCTTS--------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHH-----hhhcchh--------------hhhHHHHHHHHHH
Confidence 33444555666778888888888877663 2432 22222 0000000 0011223346667
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC--h
Q 009506 188 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK--V 265 (533)
Q Consensus 188 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~--~ 265 (533)
|.+.|++++|+..|++..+.... +...|..+...|...|++++|++.|++..+.. +.+...|..+...|...|+ .
T Consensus 64 ~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~~~~~~ 140 (208)
T 3urz_A 64 YKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE--ADNLAANIFLGNYYYLTAEQEK 140 (208)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHhHHHH
Confidence 77777777777777777766443 56677777777777777777777777776654 3456667777666655443 3
Q ss_pred HHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHH
Q 009506 266 SEAEAMFNEMLEAGFEPNLF--VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 321 (533)
Q Consensus 266 ~~A~~~~~~m~~~g~~p~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 321 (533)
+.+...++... .|+.. .+..+..++...|++++|...|++..+. .|+...
T Consensus 141 ~~~~~~~~~~~----~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~ 192 (208)
T 3urz_A 141 KKLETDYKKLS----SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEA 192 (208)
T ss_dssp HHHHHHHC-------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHH
T ss_pred HHHHHHHHHHh----CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHH
Confidence 33444444432 23332 2333344555667777777777777653 455443
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.76 E-value=6e-07 Score=84.44 Aligned_cols=184 Identities=10% Similarity=-0.005 Sum_probs=132.2
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009506 127 CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL-SPNWNTYASLLRAYGRARYGEDTLSVYREMK 205 (533)
Q Consensus 127 A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 205 (533)
|+..|++..+.+ .++..++..+..++...|++++|++++.+.+..|- .-+...+..++..|.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 778888877654 45666667888888889999999999998876552 1356778888899999999999999999998
Q ss_pred HcCCCc-----CHHHHHHHHHH--HHh--cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009506 206 EKGMQL-----SVTLYNTLLAM--CAD--VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 276 (533)
Q Consensus 206 ~~g~~~-----~~~~~~~li~~--~~~--~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 276 (533)
+. .| +..+...|..+ ... .+++.+|..+|+++... .|+..+-..++.++.+.|++++|++.++.+.
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 76 34 24455555555 222 33899999999998764 3554455555668889999999999998765
Q ss_pred Hc-----CC----CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHH
Q 009506 277 EA-----GF----EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 320 (533)
Q Consensus 277 ~~-----g~----~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 320 (533)
+. .. +-|..++..+|......|+ +|.+++.++.+.. |+..
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~--P~hp 287 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD--HEHA 287 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT--CCCH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC--CCCh
Confidence 42 11 2356666566666666676 7888999988753 5554
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.2e-06 Score=78.83 Aligned_cols=176 Identities=11% Similarity=-0.005 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----ChHHHHHHH
Q 009506 126 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR----YGEDTLSVY 201 (533)
Q Consensus 126 ~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g----~~~~a~~~~ 201 (533)
+|++.|++..+. -+...+..|-..|...+++++|++.|++..+.| +...+..|-..|.. + ++++|.+.|
T Consensus 4 eA~~~~~~aa~~---g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEA---GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHC---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 355556665554 255566666666666666666666666666654 45555556666655 4 666666666
Q ss_pred HHHHHcCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCC-CCHHHHHHHHHHHHh----cCChHHHHHHH
Q 009506 202 REMKEKGMQLSVTLYNTLLAMCAD----VGYTDEAFEIFEDMKSSENCQ-PDSWTFSSMITICSC----RGKVSEAEAMF 272 (533)
Q Consensus 202 ~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~-p~~~~~~~li~~~~~----~g~~~~A~~~~ 272 (533)
++..+.| +...+..|...|.. .+++++|++.|++..+.+. . .+...+..|...|.. .+++++|.+.|
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~-~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSE-SDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTT-SHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCC-CcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 6666554 45556666666655 5667777777776665441 0 125666666666666 66677777777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhc-C-----ChhHHHHHHHHhhhCC
Q 009506 273 NEMLEAGFEPNLFVLTSLIQCYGKA-Q-----RTDDVVRALNRLPELG 314 (533)
Q Consensus 273 ~~m~~~g~~p~~~~~~~li~~~~~~-g-----~~~~a~~~~~~m~~~g 314 (533)
++..+. ..+...+..|-..|... | +.++|..+|++..+.|
T Consensus 153 ~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 153 KGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 776654 12334555555555432 2 6667777776666655
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.74 E-value=5.9e-07 Score=80.54 Aligned_cols=136 Identities=9% Similarity=-0.010 Sum_probs=80.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh
Q 009506 146 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 225 (533)
Q Consensus 146 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 225 (533)
++.+..++.+.|++++|+..|++..+.. +-+...+..+...|...|++++|+..|++..+.... +..+|..+...|..
T Consensus 57 ~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 57 ATELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHH
Confidence 3446666677777777777777776643 335666777777777777777777777777766443 56666666666655
Q ss_pred cCC--HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 009506 226 VGY--TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 288 (533)
Q Consensus 226 ~g~--~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 288 (533)
.|+ .+.+...++.... ..|....+..+..++...|++++|...|++..+. .|+.....
T Consensus 135 ~~~~~~~~~~~~~~~~~~---~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~ 194 (208)
T 3urz_A 135 TAEQEKKKLETDYKKLSS---PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQK 194 (208)
T ss_dssp HHHHHHHHHHHHHC---C---CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHH
T ss_pred HhHHHHHHHHHHHHHHhC---CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHH
Confidence 443 3344444444432 1222333444455556667777777777776653 46654433
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.72 E-value=5.6e-07 Score=83.72 Aligned_cols=102 Identities=12% Similarity=-0.076 Sum_probs=75.8
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--cCHHH
Q 009506 141 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN---WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ--LSVTL 215 (533)
Q Consensus 141 pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~--~~~~~ 215 (533)
.+...+-.+...+.+.|++++|+..|+++.+.. +-+ ...+..+..+|.+.|++++|+..|++..+.... .....
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 355666677777888888999998888888753 223 567778888888888888888888888876331 12456
Q ss_pred HHHHHHHHHh--------cCCHHHHHHHHHHHHhCC
Q 009506 216 YNTLLAMCAD--------VGYTDEAFEIFEDMKSSE 243 (533)
Q Consensus 216 ~~~li~~~~~--------~g~~~~A~~~~~~m~~~~ 243 (533)
+..+..++.. .|++++|++.|+++.+..
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 127 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY 127 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC
Confidence 6667777777 888888888888877653
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.72 E-value=1e-07 Score=101.86 Aligned_cols=173 Identities=9% Similarity=-0.043 Sum_probs=127.5
Q ss_pred HHcCChHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 009506 119 GTAGNFDGCLNVYEEMK--------AIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 190 (533)
Q Consensus 119 ~~~g~~~~A~~~~~~m~--------~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 190 (533)
...|++++|++.|++.. +. .+.+...|..+..++.+.|++++|++.|++..+.. +-+...|..+..+|.+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 67889999999999887 32 23356677788888888888888888888888753 3466788888888888
Q ss_pred cCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 009506 191 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 270 (533)
Q Consensus 191 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 270 (533)
.|++++|++.|++..+.... +...|..+..+|.+.|++++ ++.|++..+.. +.+...|..+..+|.+.|++++|.+
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN--DGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC--CchHHHHHHHHHHHHHcCCHHHHHH
Confidence 88888888888888876544 56777778888888888888 88888877654 4567778888888888888888888
Q ss_pred HHHHHHHcCCCCC-HHHHHHHHHHHHhcCC
Q 009506 271 MFNEMLEAGFEPN-LFVLTSLIQCYGKAQR 299 (533)
Q Consensus 271 ~~~~m~~~g~~p~-~~~~~~li~~~~~~g~ 299 (533)
.|++..+. .|+ ...+..+..++...++
T Consensus 556 ~~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 88776553 354 4556666666655443
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.69 E-value=1.3e-06 Score=79.34 Aligned_cols=185 Identities=12% Similarity=0.033 Sum_probs=115.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HH
Q 009506 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK-P-NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW----NT 180 (533)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p-d~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~ 180 (533)
++..+..+...+.+.|++++|+..|+++.+.... + ....+..+..++.+.|++++|+..|+++.+.. |+. ..
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a 80 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYV 80 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHH
Confidence 4455666778888999999999999998874211 1 13567788889999999999999999998753 332 23
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHH---------
Q 009506 181 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWT--------- 251 (533)
Q Consensus 181 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~--------- 251 (533)
+..+..++.+.+.. .+ ..|..+-..+...|++++|.+.|+++.+.. +-+...
T Consensus 81 ~~~~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~~ 141 (225)
T 2yhc_A 81 MYMRGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLVF 141 (225)
T ss_dssp HHHHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHHH
Confidence 44444444332100 00 001111222233444555555555544432 111111
Q ss_pred --------HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHhhhCC
Q 009506 252 --------FSSMITICSCRGKVSEAEAMFNEMLEAGFEPN----LFVLTSLIQCYGKAQRTDDVVRALNRLPELG 314 (533)
Q Consensus 252 --------~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 314 (533)
...+...|.+.|++++|...|+++.+.. |+ ...+..+..+|.+.|+.++|.+.++.+...+
T Consensus 142 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 142 LKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 1355677888999999999999887742 44 2467788889999999999999998887654
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.6e-05 Score=75.31 Aligned_cols=220 Identities=9% Similarity=-0.011 Sum_probs=111.6
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHcCCCcCHHHHHHHHHHH----Hhc---CCHH
Q 009506 160 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR--YGEDTLSVYREMKEKGMQLSVTLYNTLLAMC----ADV---GYTD 230 (533)
Q Consensus 160 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g--~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~----~~~---g~~~ 230 (533)
++|+++++.++... +-+...|+.--..+...+ +++++++.++.+.....+ +..+|+.--..+ ... ++++
T Consensus 50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCHH
Confidence 35555555555432 122334444444444444 555555555555554333 333444333333 233 4445
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 009506 231 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS--EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALN 308 (533)
Q Consensus 231 ~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 308 (533)
+++++++.+.+.. +.+..+|+.-.-.+.+.|.++ ++.+.++++.+... -|...|+--...+.+.|+.
T Consensus 128 ~EL~~~~~~l~~~--pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~-------- 196 (306)
T 3dra_A 128 REFDILEAMLSSD--PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHL-------- 196 (306)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGG--------
T ss_pred HHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcccc--------
Confidence 5555555544433 334444444444444444444 44444444444321 2333343332222222220
Q ss_pred HhhhCCCCCCHHHHHHHHHHHhcCC-hHHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhcc-----C
Q 009506 309 RLPELGITPDDRFCGCLLNVMTQTP-KEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK-----D 382 (533)
Q Consensus 309 ~m~~~g~~p~~~~~~~ll~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~~-----~ 382 (533)
.+ .. -+++.+.++.+...+|.....+..+...+.+.|...+++.++..++.. .
T Consensus 197 --------~~-------------~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (306)
T 3dra_A 197 --------AT-------------DNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQV 255 (306)
T ss_dssp --------CC-------------HHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEE
T ss_pred --------ch-------------hhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCC
Confidence 00 00 145556666666777777776655555555555433444455554432 2
Q ss_pred ccchhhHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009506 383 VKKAYCNCLIDLCVNLNLLENACKLLELGLT 413 (533)
Q Consensus 383 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 413 (533)
.+...+..+.+.|.+.|+.++|.++++.+.+
T Consensus 256 ~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 256 TSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 2445788889999999999999999998764
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=4e-07 Score=86.23 Aligned_cols=164 Identities=10% Similarity=0.067 Sum_probs=76.0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH-
Q 009506 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL- 185 (533)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll- 185 (533)
+...+..+...+.+.|++++|+..|++..+.. +-+...+..+...+.+.|++++|+..|++.... .|+........
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHH
Confidence 33444455555555555555555555554421 123445555555555555555555555554432 23332222111
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCh
Q 009506 186 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 265 (533)
Q Consensus 186 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 265 (533)
..+.+.++.++|...|++..+.... +...+..+...|...|++++|++.|+++.+...-..+...+..++..|...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 1233444445555555555444322 444455555555555555555555555444320001134444555555555555
Q ss_pred HHHHHHHHH
Q 009506 266 SEAEAMFNE 274 (533)
Q Consensus 266 ~~A~~~~~~ 274 (533)
++|...|++
T Consensus 272 ~~a~~~~r~ 280 (287)
T 3qou_A 272 DALASXYRR 280 (287)
T ss_dssp CHHHHHHHH
T ss_pred CcHHHHHHH
Confidence 555444444
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=5.8e-07 Score=93.95 Aligned_cols=152 Identities=7% Similarity=-0.042 Sum_probs=89.2
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 009506 122 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 201 (533)
Q Consensus 122 g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 201 (533)
|++++|++.|++..+.. +-+...|..+...+.+.|++++|++.|++..+.. +-+...+..+...|.+.|++++|.+.|
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 56667777776665532 2245666666677777777777777777776643 334566667777777777777777777
Q ss_pred HHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc---CChHHHHHHHHHHHHc
Q 009506 202 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR---GKVSEAEAMFNEMLEA 278 (533)
Q Consensus 202 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~ 278 (533)
++..+.... +...|..+...|.+.|++++|.+.|++..+.. +.+...+..+...|... |++++|.+.+++..+.
T Consensus 81 ~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL--PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 776665433 56666677777777777777777777766543 34566666777777777 7777777777776654
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.67 E-value=1.1e-05 Score=76.46 Aligned_cols=232 Identities=8% Similarity=0.032 Sum_probs=173.3
Q ss_pred HHHHcCC-hHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC--ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH----
Q 009506 117 LYGTAGN-FDGCLNVYEEMKAIGVKP-NMITYNNLLDTMGRAK--RPWQVKTIYKEMTDNGLSPNWNTYASLLRAY---- 188 (533)
Q Consensus 117 ~~~~~g~-~~~A~~~~~~m~~~g~~p-d~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~---- 188 (533)
+..+.|. .++|+++++.+... .| +...||.--..+...+ +++++++.++.+.... +-+..+|+.--..+
T Consensus 41 a~~~~~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~ 117 (306)
T 3dra_A 41 ALMKAEEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIM 117 (306)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHH
Confidence 3344454 46899999999874 35 4566888888888888 9999999999999754 34556676554444
Q ss_pred Hhc---CChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC
Q 009506 189 GRA---RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD--EAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 263 (533)
Q Consensus 189 ~~~---g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 263 (533)
.+. +++++++.+++.+.+...+ +-.+|+.-.-.+.+.|.++ ++++.++++.+.. ..|...|+.-...+.+.+
T Consensus 118 ~~l~~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d--~~N~sAW~~R~~ll~~l~ 194 (306)
T 3dra_A 118 ELNNNDFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD--LKNNSAWSHRFFLLFSKK 194 (306)
T ss_dssp HHTTTCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHSSG
T ss_pred HhccccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcc
Confidence 555 7899999999999998765 8899999988889999888 9999999999876 578889988877777777
Q ss_pred C------hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhH-HHHHHHHhhhCC--CCCCHHHHHHHHHHHhcCCh
Q 009506 264 K------VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD-VVRALNRLPELG--ITPDDRFCGCLLNVMTQTPK 334 (533)
Q Consensus 264 ~------~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~~~ 334 (533)
. ++++.+.++++.... +-|...|+-+-..+.+.|+... +..+..++.+.+ -..+...+..+...+.+.|+
T Consensus 195 ~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~ 273 (306)
T 3dra_A 195 HLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKK 273 (306)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTC
T ss_pred ccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCC
Confidence 6 888999988887754 3578888888888888887544 555666665543 12345566667777776666
Q ss_pred -HHHHHHHHHHHh-cCCChhHHH
Q 009506 335 -EELGKLVECVEK-SNSKLGYVV 355 (533)
Q Consensus 335 -~~a~~~~~~~~~-~~~~~~~~~ 355 (533)
++|.++++.+.+ .+|....++
T Consensus 274 ~~~A~~~~~~l~~~~Dpir~~yW 296 (306)
T 3dra_A 274 YNESRTVYDLLKSKYNPIRSNFW 296 (306)
T ss_dssp HHHHHHHHHHHHHTTCGGGHHHH
T ss_pred HHHHHHHHHHHHhccChHHHHHH
Confidence 667777666664 455544444
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=6.6e-07 Score=84.68 Aligned_cols=166 Identities=7% Similarity=-0.048 Sum_probs=136.4
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHH-H
Q 009506 141 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNT-L 219 (533)
Q Consensus 141 pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~-l 219 (533)
.+...+..+...+.+.|++++|+..|++..+.. +-+...+..+...|.+.|++++|..++++..... |+...... .
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~ 191 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVA 191 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHH
Confidence 455667778888999999999999999998764 4467889999999999999999999999987764 34443333 3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcC
Q 009506 220 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE-PNLFVLTSLIQCYGKAQ 298 (533)
Q Consensus 220 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g 298 (533)
...+...++.++|.+.|++..... +.+...+..+...|...|++++|...|.++.+..-. .+...+..++..|...|
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~--P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAEN--PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHhhcccCccHHHHHHHHhcC--CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 334667788888999999988765 567899999999999999999999999999885411 12678999999999999
Q ss_pred ChhHHHHHHHHhh
Q 009506 299 RTDDVVRALNRLP 311 (533)
Q Consensus 299 ~~~~a~~~~~~m~ 311 (533)
+.++|...|++..
T Consensus 270 ~~~~a~~~~r~al 282 (287)
T 3qou_A 270 TGDALASXYRRQL 282 (287)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 9999999988754
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.67 E-value=2.4e-06 Score=77.54 Aligned_cols=186 Identities=11% Similarity=0.012 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCH--HHHHHH
Q 009506 144 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL-SP-NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV--TLYNTL 219 (533)
Q Consensus 144 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~--~~~~~l 219 (533)
..+..+...+.+.|++++|+..|+++.+..- .| ....+..+..+|.+.|++++|+..|+++.+....-.. ..+..+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 3445555666777777777777777775421 11 1345666677777777777777777777765332111 123333
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHH-----------
Q 009506 220 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL-FVL----------- 287 (533)
Q Consensus 220 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~----------- 287 (533)
..++.+.|.. .++ .|..+...+...|++++|...|+++.+.. |+. ..+
T Consensus 85 g~~~~~~~~~-----~~~-------------~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~~~~~ 144 (225)
T 2yhc_A 85 GLTNMALDDS-----ALQ-------------GFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLVFLKD 144 (225)
T ss_dssp HHHHHHHHC--------------------------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHHHHHH
T ss_pred HHHHHhhhhh-----hhh-------------hhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHHHHHH
Confidence 3333322210 111 12222334455788999999999988742 442 111
Q ss_pred ------HHHHHHHHhcCChhHHHHHHHHhhhCCCCCCH----HHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCCh
Q 009506 288 ------TSLIQCYGKAQRTDDVVRALNRLPELGITPDD----RFCGCLLNVMTQTPK-EELGKLVECVEKSNSKL 351 (533)
Q Consensus 288 ------~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~ 351 (533)
..+...|.+.|++++|...|+++.+.. |+. ..+..+..++.+.|+ ++|.+.++.+....|+.
T Consensus 145 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 145 RLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 345678899999999999999998753 332 467788999999999 99999999988877654
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=98.67 E-value=2.9e-05 Score=81.90 Aligned_cols=200 Identities=10% Similarity=0.014 Sum_probs=145.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC---------CCC
Q 009506 213 VTLYNTLLAMCADVGYTDEAF-EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG---------FEP 282 (533)
Q Consensus 213 ~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---------~~p 282 (533)
...|-..+..+...|+.++|. ++|++.... ++.+...|-..+...-+.|+++.|.++|+.+.+.. -.|
T Consensus 343 ~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~--~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p 420 (679)
T 4e6h_A 343 PEIWFNMANYQGEKNTDSTVITKYLKLGQQC--IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDP 420 (679)
T ss_dssp HHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccC
Confidence 344444445555677878886 999888764 35677778888888999999999999999987631 013
Q ss_pred C------------HHHHHHHHHHHHhcCChhHHHHHHHHhhhC-CCCCCHHHHHHHHHHHhcC-Ch-HHHHHHHHHHHhc
Q 009506 283 N------------LFVLTSLIQCYGKAQRTDDVVRALNRLPEL-GITPDDRFCGCLLNVMTQT-PK-EELGKLVECVEKS 347 (533)
Q Consensus 283 ~------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~-~~-~~a~~~~~~~~~~ 347 (533)
+ ...|...+....+.|..+.|..+|.+..+. +.. ....|......-.+. ++ +.|.++|+...+.
T Consensus 421 ~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~-~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~ 499 (679)
T 4e6h_A 421 TNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLV-TPDIYLENAYIEYHISKDTKTACKVLELGLKY 499 (679)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGS-CTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred cchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 2 346788888888889999999999998876 221 223333333223333 33 8999999998888
Q ss_pred CCChhHHHHHHHHhhhhhccHHHHHHHHHhhhccC-c----cchhhHHHHHHHHhcCCHHHHHHHHHHHHhccc
Q 009506 348 NSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKD-V----KKAYCNCLIDLCVNLNLLENACKLLELGLTLEV 416 (533)
Q Consensus 348 ~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~~~-~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 416 (533)
.|+...++...+......|+. +.|..+|++.... + ....|...+..-.+.|+.+.+.++.+++.+.-.
T Consensus 500 ~p~~~~~w~~y~~fe~~~~~~-~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 500 FATDGEYINKYLDFLIYVNEE-SQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp HTTCHHHHHHHHHHHHHHTCH-HHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHST
T ss_pred CCCchHHHHHHHHHHHhCCCH-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 777777776677766677876 9999999986542 2 345899999999999999999999999987653
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=6e-07 Score=93.87 Aligned_cols=154 Identities=7% Similarity=-0.058 Sum_probs=120.0
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 009506 156 AKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 235 (533)
Q Consensus 156 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 235 (533)
.|++++|++.|++..+.. +-+...+..+...|.+.|++++|.+.|++..+.... +...|..+...|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999988753 346789999999999999999999999999987544 688999999999999999999999
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CChhHHHHHHHHhhh
Q 009506 236 FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA---QRTDDVVRALNRLPE 312 (533)
Q Consensus 236 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~ 312 (533)
|++..+.. +.+...|..+...|.+.|++++|.+.|++..+.. +.+...+..+..++... |+.++|.+.|++..+
T Consensus 80 ~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDAA--PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 99988865 5578899999999999999999999999988753 24578888999999999 999999999999887
Q ss_pred CC
Q 009506 313 LG 314 (533)
Q Consensus 313 ~g 314 (533)
.+
T Consensus 157 ~~ 158 (568)
T 2vsy_A 157 QG 158 (568)
T ss_dssp HT
T ss_pred cC
Confidence 64
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.65 E-value=4.6e-07 Score=78.81 Aligned_cols=162 Identities=12% Similarity=0.058 Sum_probs=103.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-HH
Q 009506 111 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA-YG 189 (533)
Q Consensus 111 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~-~~ 189 (533)
+..+...+.+.|++++|+..|++..+.. +-+...+..+..++...|++++|+..|++..+.. |+...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 3455667778888888888888765431 2356778888888888888888888888776543 344433322211 11
Q ss_pred hcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 009506 190 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 269 (533)
Q Consensus 190 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 269 (533)
+.+....|...|++..+.... +...+..+...+...|++++|.+.|+++.+...-..+...+..+...|...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 222333466677776665433 5666777777777777777777777777664310112456667777777777777777
Q ss_pred HHHHHHH
Q 009506 270 AMFNEML 276 (533)
Q Consensus 270 ~~~~~m~ 276 (533)
..|++..
T Consensus 165 ~~y~~al 171 (176)
T 2r5s_A 165 SKYRRQL 171 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776654
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.64 E-value=9.5e-07 Score=94.33 Aligned_cols=171 Identities=11% Similarity=-0.014 Sum_probs=138.6
Q ss_pred HhcCChhHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh
Q 009506 154 GRAKRPWQVKTIYKEMT--------DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 225 (533)
Q Consensus 154 ~~~g~~~~a~~~~~~m~--------~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 225 (533)
...|++++|++.|++.. +.. +.+...+..+..+|.+.|++++|++.|++..+.... +...|..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 67899999999999988 332 445678888999999999999999999999887544 77889999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 009506 226 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 305 (533)
Q Consensus 226 ~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 305 (533)
.|++++|++.|++..+.. +.+...|..+..+|.+.|++++ .+.|++..+.. +-+...|..+..+|.+.|++++|..
T Consensus 480 ~g~~~~A~~~~~~al~l~--P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF--PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999988764 4567888999999999999999 99999988754 2357788899999999999999999
Q ss_pred HHHHhhhCCCCCCH-HHHHHHHHHHhcC
Q 009506 306 ALNRLPELGITPDD-RFCGCLLNVMTQT 332 (533)
Q Consensus 306 ~~~~m~~~g~~p~~-~~~~~ll~~~~~~ 332 (533)
.|++..+. .|+. ..+..+..++...
T Consensus 556 ~~~~al~l--~P~~~~a~~~~~~~~~~~ 581 (681)
T 2pzi_A 556 TLDEVPPT--SRHFTTARLTSAVTLLSG 581 (681)
T ss_dssp HHHTSCTT--STTHHHHHHHHHHHTC--
T ss_pred HHHhhccc--CcccHHHHHHHHHHHHcc
Confidence 99998764 4554 3555555555443
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.63 E-value=2.9e-07 Score=80.09 Aligned_cols=161 Identities=6% Similarity=0.005 Sum_probs=112.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHH-HH
Q 009506 146 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM-CA 224 (533)
Q Consensus 146 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~-~~ 224 (533)
+..+...+.+.|++++|+..|++..+.. +-+...+..+...|.+.|++++|+..|++..+... +...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHH
Confidence 4455667778888888888888776542 34567888888888888899888888888766533 44333322211 12
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChhHH
Q 009506 225 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP-NLFVLTSLIQCYGKAQRTDDV 303 (533)
Q Consensus 225 ~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a 303 (533)
..+...+|++.|++..+.. +.+...+..+...+...|++++|...|+++.+..-.+ +...+..+...|...|+.++|
T Consensus 86 ~~~~~~~a~~~~~~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN--PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred hhcccchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 2223334677787777653 3467888888888888888888888888887754221 255777888888888888888
Q ss_pred HHHHHHhh
Q 009506 304 VRALNRLP 311 (533)
Q Consensus 304 ~~~~~~m~ 311 (533)
...|++..
T Consensus 164 ~~~y~~al 171 (176)
T 2r5s_A 164 ASKYRRQL 171 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887654
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.62 E-value=7.2e-06 Score=73.59 Aligned_cols=175 Identities=14% Similarity=0.045 Sum_probs=143.3
Q ss_pred hhHHHHHhhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----ChhHHHHHHHH
Q 009506 93 KSYDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK----RPWQVKTIYKE 168 (533)
Q Consensus 93 ~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g----~~~~a~~~~~~ 168 (533)
...+....+.| ++..+..|-..|...+++++|++.|++..+.| +...+..|-..|.. + ++++|++.|++
T Consensus 6 ~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 6 GSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEK 78 (212)
T ss_dssp THHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence 34444555544 78889999999999999999999999998864 67788888888887 6 89999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCC-cCHHHHHHHHHHHHh----cCCHHHHHHHHHHH
Q 009506 169 MTDNGLSPNWNTYASLLRAYGR----ARYGEDTLSVYREMKEKGMQ-LSVTLYNTLLAMCAD----VGYTDEAFEIFEDM 239 (533)
Q Consensus 169 m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m 239 (533)
..+.| +...+..|-..|.. .+++++|++.|++..+.|.. -+...+..|-..|.. .+++++|++.|++.
T Consensus 79 A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 79 AVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp HHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred HHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 98875 67788888888887 88999999999999888642 126788888888888 88999999999999
Q ss_pred HhCCCCCCCHHHHHHHHHHHHhc-C-----ChHHHHHHHHHHHHcCC
Q 009506 240 KSSENCQPDSWTFSSMITICSCR-G-----KVSEAEAMFNEMLEAGF 280 (533)
Q Consensus 240 ~~~~~~~p~~~~~~~li~~~~~~-g-----~~~~A~~~~~~m~~~g~ 280 (533)
.+.+ .+...+..|..+|... | ++++|.+.|+...+.|.
T Consensus 156 ~~~~---~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 156 SSLS---RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHTS---CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHcC---CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 8752 3445677787788754 3 89999999999888763
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.57 E-value=6.9e-05 Score=76.41 Aligned_cols=307 Identities=8% Similarity=-0.003 Sum_probs=162.9
Q ss_pred hhHHhhHHHHHhhcCCCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHC-CCC-CCHHHHHHHHHHHH----hcCChhH
Q 009506 89 KLKEKSYDTRARNEKWRIDPNAFSTLIKLYGTAGN-FDGCLNVYEEMKAI-GVK-PNMITYNNLLDTMG----RAKRPWQ 161 (533)
Q Consensus 89 ~~~~~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~-g~~-pd~~~~~~li~~~~----~~g~~~~ 161 (533)
..+++.|+.+.... .|++..|...+....+.++ .+....+|+..... |.. .+...|...+..+. ..++.+.
T Consensus 30 ~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~ 107 (493)
T 2uy1_A 30 YRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEK 107 (493)
T ss_dssp HHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHH
T ss_pred HHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHH
Confidence 34567777777763 4688888888888877763 45577788876643 432 36677777776543 2456777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHH-------------hcCCh----------------------------------
Q 009506 162 VKTIYKEMTDNGLSPNWNTYASLLRAYG-------------RARYG---------------------------------- 194 (533)
Q Consensus 162 a~~~~~~m~~~g~~p~~~~~~~ll~~~~-------------~~g~~---------------------------------- 194 (533)
+.++|++.+.....--...|......-. ..+.+
T Consensus 108 vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~ 187 (493)
T 2uy1_A 108 IRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGM 187 (493)
T ss_dssp HHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCc
Confidence 8888888876321111112211111000 00011
Q ss_pred --------HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChH
Q 009506 195 --------EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 266 (533)
Q Consensus 195 --------~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 266 (533)
+.+..+|+++..... .+...|-..+.-+.+.|+.++|.++|++.... +.+...|. .|+...+.+
T Consensus 188 ~~~~~~~~~Rv~~~ye~al~~~p-~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~----~y~~~~e~~ 259 (493)
T 2uy1_A 188 KLGGRPHESRMHFIHNYILDSFY-YAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL----YYGLVMDEE 259 (493)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH----HHHHHTTCT
T ss_pred cCcchhhHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH----HHHhhcchh
Confidence 123334444443321 23444444444455555555555555555543 11111111 111111111
Q ss_pred HHHHHHHHHHHcC---------CCC---CHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHH--HHHHHHhcC
Q 009506 267 EAEAMFNEMLEAG---------FEP---NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG--CLLNVMTQT 332 (533)
Q Consensus 267 ~A~~~~~~m~~~g---------~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~--~ll~~~~~~ 332 (533)
+. ++.+.+.- ..+ ....|...+..+.+.+..+.|..+|++....+ .+...|. +.+......
T Consensus 260 ~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~--~~~~v~i~~A~lE~~~~~ 334 (493)
T 2uy1_A 260 AV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELGNEG--VGPHVFIYCAFIEYYATG 334 (493)
T ss_dssp HH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTSC--CCHHHHHHHHHHHHHHHC
T ss_pred HH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhhCCC--CChHHHHHHHHHHHHHCC
Confidence 11 11111100 000 11334445555556677888888888882211 2333333 223322222
Q ss_pred ChHHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhccCccchhhHHHHHHHHhcCCHHHHHHHHHHHH
Q 009506 333 PKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGL 412 (533)
Q Consensus 333 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 412 (533)
..+.|..+++...+..++...++...++.....|+. +.|..+|++... ....|...++.-...|+.+.+.++++++.
T Consensus 335 d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~-~~aR~l~er~~k--~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 335 SRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDE-ENARALFKRLEK--TSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH-HHHHHHHHHSCC--BHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHH--HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 237888888887776666555554456655666765 788888888743 45678888888888888888888888876
Q ss_pred h
Q 009506 413 T 413 (533)
Q Consensus 413 ~ 413 (533)
.
T Consensus 412 ~ 412 (493)
T 2uy1_A 412 D 412 (493)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=1.7e-07 Score=79.28 Aligned_cols=84 Identities=8% Similarity=-0.066 Sum_probs=36.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc
Q 009506 183 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 262 (533)
Q Consensus 183 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 262 (533)
.+...|.+.|++++|++.|++..+.... +..+|..+...|.+.|++++|+..|++..+.. +-+...|..+...|.+.
T Consensus 36 ~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~ 112 (150)
T 4ga2_A 36 YFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTDKAVECYRRSVELN--PTQKDLVLKIAELLCKN 112 (150)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHc
Confidence 3344444444444444444444443322 34444444444444444444444444444332 22344444444444444
Q ss_pred CChHHHH
Q 009506 263 GKVSEAE 269 (533)
Q Consensus 263 g~~~~A~ 269 (533)
|++++|.
T Consensus 113 ~~~~~aa 119 (150)
T 4ga2_A 113 DVTDGRA 119 (150)
T ss_dssp CSSSSHH
T ss_pred CChHHHH
Confidence 4444433
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=3.2e-07 Score=77.57 Aligned_cols=139 Identities=11% Similarity=0.018 Sum_probs=65.5
Q ss_pred HHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 009506 119 GTAGNFDGCLNVYEEMKAIGVKP-NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 197 (533)
Q Consensus 119 ~~~g~~~~A~~~~~~m~~~g~~p-d~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 197 (533)
...|++++|+..|+..... .| +...+-.+-..|.+.|++++|++.|++.++.. +-+..+|..+..+|.+.|++++|
T Consensus 8 ~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 8 RSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp CCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHH
Confidence 3445555555555554321 11 12223344455555555555555555555432 23445555555555555555555
Q ss_pred HHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHhCCCCCCCHHHHHHHHHHHHhcC
Q 009506 198 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI-FEDMKSSENCQPDSWTFSSMITICSCRG 263 (533)
Q Consensus 198 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~-~~~m~~~~~~~p~~~~~~~li~~~~~~g 263 (533)
+..|++..+.... +..+|..+...|.+.|++++|.+. +++..+.. +-+...|......+...|
T Consensus 85 ~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~--P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 85 VECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF--PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS--TTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHhC
Confidence 5555555554332 444555555555555555444333 34444322 223444444444444433
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.55 E-value=5e-06 Score=74.31 Aligned_cols=130 Identities=12% Similarity=0.014 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009506 109 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 188 (533)
Q Consensus 109 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 188 (533)
..+..+...+.+.|++++|+..|++.. .|+...|..+...+...|++++|++.|++..+.. +.+...+..+..+|
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 345667778888899999999988773 5688888888899999999999999998888754 45677888888888
Q ss_pred HhcCChHHHHHHHHHHHHcCCC--------------c-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 009506 189 GRARYGEDTLSVYREMKEKGMQ--------------L-SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 243 (533)
Q Consensus 189 ~~~g~~~~a~~~~~~m~~~g~~--------------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 243 (533)
.+.|++++|.+.|++..+.... | ....+..+...|.+.|++++|.+.|++..+..
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 8999999999999888875322 1 23677778888888888888888888887653
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.55 E-value=4.1e-06 Score=74.84 Aligned_cols=128 Identities=7% Similarity=-0.039 Sum_probs=104.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 009506 145 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 224 (533)
Q Consensus 145 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 224 (533)
.+..+...+...|++++|+..|++. +.|+..++..+...|.+.|++++|+..|++..+.... +...|..+...|.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHH
Confidence 3556667788899999999999876 3578889999999999999999999999988877543 6788888899999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCC----------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 009506 225 DVGYTDEAFEIFEDMKSSENCQPD----------------SWTFSSMITICSCRGKVSEAEAMFNEMLEAG 279 (533)
Q Consensus 225 ~~g~~~~A~~~~~~m~~~~~~~p~----------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 279 (533)
..|++++|++.|++..+.. +.+ ...+..+...|.+.|++++|.+.|++..+..
T Consensus 83 ~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQL--RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTT--TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HcccHHHHHHHHHHHHHhC--CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 9999999999998887743 222 3678888888999999999999998887743
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.55 E-value=2.1e-06 Score=82.04 Aligned_cols=162 Identities=7% Similarity=-0.050 Sum_probs=94.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCc-CHHHHHH
Q 009506 149 LLDTMGRAKRPWQVKTIYKEMTDN----GLSP-NWNTYASLLRAYGRARYGEDTLSVYREMKEK----GMQL-SVTLYNT 218 (533)
Q Consensus 149 li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~~-~~~~~~~ 218 (533)
....|...|++++|...|.+..+. |-.. -..+|+.+...|.+.|++++|+..|++..+. |-.. -..+++.
T Consensus 42 a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~ 121 (307)
T 2ifu_A 42 AAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDR 121 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344566667777777777666532 1000 1245666677777777777777777665442 1111 1345666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCC--CC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCC-HHHHHH
Q 009506 219 LLAMCADVGYTDEAFEIFEDMKSSENC--QP--DSWTFSSMITICSCRGKVSEAEAMFNEMLEA----GFEPN-LFVLTS 289 (533)
Q Consensus 219 li~~~~~~g~~~~A~~~~~~m~~~~~~--~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~ 289 (533)
+...|.. |++++|++.|++......- .+ ...++..+...|.+.|++++|...|++..+. +..+. ...+..
T Consensus 122 lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 200 (307)
T 2ifu_A 122 AGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIA 200 (307)
T ss_dssp HHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHH
Confidence 6666766 7777777777665432100 01 1355667777777777777777777776542 11111 124555
Q ss_pred HHHHHHhcCChhHHHHHHHHhh
Q 009506 290 LIQCYGKAQRTDDVVRALNRLP 311 (533)
Q Consensus 290 li~~~~~~g~~~~a~~~~~~m~ 311 (533)
+..++...|++++|...|++..
T Consensus 201 ~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 201 QVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHh
Confidence 5566666677777777777765
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=98.54 E-value=1.4e-05 Score=84.18 Aligned_cols=232 Identities=9% Similarity=-0.011 Sum_probs=171.9
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 009506 125 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK-TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 203 (533)
Q Consensus 125 ~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~-~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 203 (533)
+.+..+|++.... ++-+...|-.....+.+.|+.++|. ++|++.... ++.+...|-..+...-+.|+++.|.++|+.
T Consensus 326 ~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek 403 (679)
T 4e6h_A 326 ARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILS 403 (679)
T ss_dssp HHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4566788887764 3447778888888888889999996 999999864 455667788888888999999999999998
Q ss_pred HHHcCC---------Cc------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHh
Q 009506 204 MKEKGM---------QL------------SVTLYNTLLAMCADVGYTDEAFEIFEDMKSS-ENCQPDSWTFSSMITICSC 261 (533)
Q Consensus 204 m~~~g~---------~~------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~p~~~~~~~li~~~~~ 261 (533)
+.+... .| ...+|...+....+.|..+.|.++|++..+. +.+.+......+.+. .+
T Consensus 404 ~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE--~~ 481 (679)
T 4e6h_A 404 CIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIE--YH 481 (679)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHH--HT
T ss_pred HHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHH--HH
Confidence 876410 12 1346888888888889999999999998875 322233333333333 33
Q ss_pred c-CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCC--CHHHHHHHHHHHhcCCh-HHH
Q 009506 262 R-GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP--DDRFCGCLLNVMTQTPK-EEL 337 (533)
Q Consensus 262 ~-g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~~~-~~a 337 (533)
. ++.+.|.++|+...+. ++-+...|...++.....|+.+.|..+|++.......+ ....|...+..-.+.|. +.+
T Consensus 482 ~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~ 560 (679)
T 4e6h_A 482 ISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSV 560 (679)
T ss_dssp TTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHH
T ss_pred hCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 3 5599999999998875 34466677788888888999999999999988764322 23478888888888999 899
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHhh
Q 009506 338 GKLVECVEKSNSKLGYVVKLLLEEQ 362 (533)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~l~~~~ 362 (533)
.++.+.+.+..|+...+ ..+..-|
T Consensus 561 ~~v~~R~~~~~P~~~~~-~~f~~ry 584 (679)
T 4e6h_A 561 RTLEKRFFEKFPEVNKL-EEFTNKY 584 (679)
T ss_dssp HHHHHHHHHHSTTCCHH-HHHHHHT
T ss_pred HHHHHHHHHhCCCCcHH-HHHHHHh
Confidence 99999998888875433 4444444
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.51 E-value=2.9e-05 Score=73.39 Aligned_cols=162 Identities=11% Similarity=0.097 Sum_probs=103.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCC-CCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-cC----HHHHHH
Q 009506 149 LLDTMGRAKRPWQVKTIYKEMTDNG-LSPNW----NTYASLLRAYGRARYGEDTLSVYREMKEKGMQ-LS----VTLYNT 218 (533)
Q Consensus 149 li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-~~----~~~~~~ 218 (533)
.+..+...|++++|.+++++..+.. ..|+. ..+..+...|...+++++|+..|++..+.... .+ ..+|+.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3566777888888888888777632 12221 12334556666677788888888877763221 12 335777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh----C-CCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHH----cCCCCC-HHHH
Q 009506 219 LLAMCADVGYTDEAFEIFEDMKS----S-ENCQP-DSWTFSSMITICSCRGKVSEAEAMFNEMLE----AGFEPN-LFVL 287 (533)
Q Consensus 219 li~~~~~~g~~~~A~~~~~~m~~----~-~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~~~ 287 (533)
+...|...|++++|++.|++..+ . +. .+ ...+|..+...|.+.|++++|...+++..+ .+..+. ...|
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDN-EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 77788888888888888777653 1 11 22 234677777788888888888887777654 222222 5567
Q ss_pred HHHHHHHHhcCC-hhHHHHHHHHhh
Q 009506 288 TSLIQCYGKAQR-TDDVVRALNRLP 311 (533)
Q Consensus 288 ~~li~~~~~~g~-~~~a~~~~~~m~ 311 (533)
..+..+|.+.|+ .++|.+.|++..
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 777777777774 577777776654
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.50 E-value=3.3e-06 Score=80.63 Aligned_cols=190 Identities=12% Similarity=0.094 Sum_probs=138.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCC--H
Q 009506 110 AFSTLIKLYGTAGNFDGCLNVYEEMKAI----GVKP-NMITYNNLLDTMGRAKRPWQVKTIYKEMTDN----GLSPN--W 178 (533)
Q Consensus 110 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-d~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~--~ 178 (533)
.|+.....|...|++++|...|.+..+. +-.. -..+|+.+...|.+.|++++|+..|++..+. | .+. .
T Consensus 38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g-~~~~~a 116 (307)
T 2ifu_A 38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG-TPDTAA 116 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT-CHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC-CHHHHH
Confidence 5777888899999999999999987652 1111 1357888899999999999999999987642 2 122 3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CCCC-H
Q 009506 179 NTYASLLRAYGRARYGEDTLSVYREMKEK----GMQL-SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN---CQPD-S 249 (533)
Q Consensus 179 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~~p~-~ 249 (533)
.+++.+...|.+ |++++|+..|++..+. |-.. ...+++.+...|.+.|++++|++.|++...... ..+. .
T Consensus 117 ~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 195 (307)
T 2ifu_A 117 MALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCY 195 (307)
T ss_dssp HHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHH
Confidence 578888889988 9999999999987653 1111 146788899999999999999999998765310 0111 2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHhcCChhHHHH
Q 009506 250 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN------LFVLTSLIQCYGKAQRTDDVVR 305 (533)
Q Consensus 250 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~------~~~~~~li~~~~~~g~~~~a~~ 305 (533)
..+..+...+...|++++|...|++.. . .|+ ......++.++ ..|+.+.+..
T Consensus 196 ~~~~~~g~~~~~~g~~~~A~~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 196 KKCIAQVLVQLHRADYVAAQKCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 367777788888999999999999987 3 342 12344555555 4566655555
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.47 E-value=7.3e-06 Score=65.64 Aligned_cols=96 Identities=17% Similarity=0.239 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009506 109 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 188 (533)
Q Consensus 109 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 188 (533)
..|..+...|.+.|++++|++.|+++.+.. +.+..++..+...+.+.|++++|+..|+++.+.. +.+..++..+...|
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 344444444444444444444444444321 1233344444444444444444444444444321 12333344444444
Q ss_pred HhcCChHHHHHHHHHHHH
Q 009506 189 GRARYGEDTLSVYREMKE 206 (533)
Q Consensus 189 ~~~g~~~~a~~~~~~m~~ 206 (533)
.+.|++++|...|+++.+
T Consensus 88 ~~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHH
Confidence 444444444444444333
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.47 E-value=7.5e-06 Score=69.62 Aligned_cols=129 Identities=11% Similarity=-0.025 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009506 108 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 187 (533)
Q Consensus 108 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 187 (533)
+..|..+...+...|++++|+..|++..+.. +.+..+|..+...+...|++++|++.|++..+.. +.+..++..+...
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~ 90 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 3456667777777888888888887776542 2356667777777777777777777777776643 3455666666667
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCcCHHHHH--HHHHHHHhcCCHHHHHHHHHHH
Q 009506 188 YGRARYGEDTLSVYREMKEKGMQLSVTLYN--TLLAMCADVGYTDEAFEIFEDM 239 (533)
Q Consensus 188 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~m 239 (533)
|.+.|++++|...|++..+.... +...+. .++..+.+.|++++|++.++..
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 77777777777777766665332 333332 2233355556666666666544
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.47 E-value=7.3e-06 Score=69.69 Aligned_cols=127 Identities=14% Similarity=-0.007 Sum_probs=68.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 009506 145 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 224 (533)
Q Consensus 145 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 224 (533)
.|..+...+...|++++|...|++..+.. +.+..++..+...|...|++++|...+++..+.... +...|..+...+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHH
Confidence 34555555666666666666666665532 234555566666666666666666666665554322 4555555555666
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCCHHHHH--HHHHHHHhcCChHHHHHHHHHH
Q 009506 225 DVGYTDEAFEIFEDMKSSENCQPDSWTFS--SMITICSCRGKVSEAEAMFNEM 275 (533)
Q Consensus 225 ~~g~~~~A~~~~~~m~~~~~~~p~~~~~~--~li~~~~~~g~~~~A~~~~~~m 275 (533)
..|++++|.+.|++..+.. +.+...+. .++..+.+.|++++|.+.+...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 6666666666665555432 22333332 2222344555555555555443
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.46 E-value=5.8e-06 Score=78.29 Aligned_cols=166 Identities=6% Similarity=-0.061 Sum_probs=125.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CC----HHHH
Q 009506 112 STLIKLYGTAGNFDGCLNVYEEMKAIGV-KPNM----ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS-PN----WNTY 181 (533)
Q Consensus 112 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~pd~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~----~~~~ 181 (533)
...+..+.+.|++++|..++++..+... .|+. ..+..+...+...+++++|+..|++..+.... .+ ..++
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 3447788899999999999999987421 2221 23344666777788999999999999974322 23 3479
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHH----c-CCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCCCHHH
Q 009506 182 ASLLRAYGRARYGEDTLSVYREMKE----K-GMQLS-VTLYNTLLAMCADVGYTDEAFEIFEDMKS----SENCQPDSWT 251 (533)
Q Consensus 182 ~~ll~~~~~~g~~~~a~~~~~~m~~----~-g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~p~~~~ 251 (533)
+.+...|...|++++|+..|++..+ . +..+. ..+|..+...|.+.|++++|++.+++..+ .+....-..+
T Consensus 159 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~ 238 (293)
T 3u3w_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 9999999999999999999998874 1 22222 34788899999999999999999987654 2221122678
Q ss_pred HHHHHHHHHhcCC-hHHHHHHHHHHHH
Q 009506 252 FSSMITICSCRGK-VSEAEAMFNEMLE 277 (533)
Q Consensus 252 ~~~li~~~~~~g~-~~~A~~~~~~m~~ 277 (533)
|..+..+|.+.|+ +++|.+.|++...
T Consensus 239 ~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 239 YYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 9999999999995 6999999988654
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.46 E-value=8.5e-06 Score=65.22 Aligned_cols=117 Identities=14% Similarity=0.113 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 009506 143 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 222 (533)
Q Consensus 143 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 222 (533)
...|..+...+...|++++|++.|+++.+.. +.+..++..+...|.+.|++++|..+|+++.+.... +..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHH
Confidence 5678889999999999999999999998754 456788999999999999999999999999887543 78889999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC
Q 009506 223 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 263 (533)
Q Consensus 223 ~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 263 (533)
|...|++++|.+.|+++.+.. +.+...+..+...+...|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD--PNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHhcc
Confidence 999999999999999988764 456677777776665543
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.44 E-value=2.7e-05 Score=73.58 Aligned_cols=167 Identities=10% Similarity=0.033 Sum_probs=113.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CcC--
Q 009506 144 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW------NTYASLLRAYGRARYGEDTLSVYREMKEKGM---QLS-- 212 (533)
Q Consensus 144 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~------~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~---~~~-- 212 (533)
..+...+..+...|++++|.+.+++..+..-. +. ..+..+...|...|++++|+..+++..+... .+.
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 34556677788888888888888887765321 22 2234455666777888888888888765321 111
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-
Q 009506 213 VTLYNTLLAMCADVGYTDEAFEIFEDMKS---SENCQP--DSWTFSSMITICSCRGKVSEAEAMFNEMLEA----GFEP- 282 (533)
Q Consensus 213 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p- 282 (533)
..+|+.+...|...|++++|++.|++..+ ...-.+ ...+|..+...|.+.|++++|...+++..+. +...
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 45788888888888888888888877652 110011 1257788888888888888888888876542 1111
Q ss_pred CHHHHHHHHHHHHhcCChhHH-HHHHHHhh
Q 009506 283 NLFVLTSLIQCYGKAQRTDDV-VRALNRLP 311 (533)
Q Consensus 283 ~~~~~~~li~~~~~~g~~~~a-~~~~~~m~ 311 (533)
-..+|..+..+|.+.|+.++| ...|++..
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 156777788888888888888 66666654
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.43 E-value=1.4e-05 Score=75.60 Aligned_cols=168 Identities=5% Similarity=-0.084 Sum_probs=126.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCChhHHHHHHHHHHHCCC---CCC--
Q 009506 109 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM------ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL---SPN-- 177 (533)
Q Consensus 109 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~---~p~-- 177 (533)
..+...+..+...|++++|++.+++..+.... +. ..+..+...+...|++++|+..|++..+... .+.
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 34556788889999999999999988775322 22 2234455667788999999999999885321 122
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHH---c-CCCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC
Q 009506 178 WNTYASLLRAYGRARYGEDTLSVYREMKE---K-GMQL--SVTLYNTLLAMCADVGYTDEAFEIFEDMKSS----ENCQP 247 (533)
Q Consensus 178 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~---~-g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~p 247 (533)
..+|+.+...|...|++++|...|++..+ . +..+ ...+|+.+...|.+.|++++|++.+++..+. +....
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 45889999999999999999999998873 2 1111 2268889999999999999999999886542 11011
Q ss_pred CHHHHHHHHHHHHhcCChHHH-HHHHHHHHH
Q 009506 248 DSWTFSSMITICSCRGKVSEA-EAMFNEMLE 277 (533)
Q Consensus 248 ~~~~~~~li~~~~~~g~~~~A-~~~~~~m~~ 277 (533)
-..+|..+...|.+.|++++| ...+++...
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 267889999999999999999 777777543
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.42 E-value=3.7e-06 Score=74.39 Aligned_cols=157 Identities=9% Similarity=-0.027 Sum_probs=84.8
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH----CCCC-CCHHHHHHHHHHHHhcCC
Q 009506 119 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD----NGLS-PNWNTYASLLRAYGRARY 193 (533)
Q Consensus 119 ~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~-p~~~~~~~ll~~~~~~g~ 193 (533)
...|++++|.++++.+... ......+++.+...+...|++++|+..|++..+ .+.. ....++..+...|...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 3467777777755444331 112455667777777777777777777776654 1111 123456666666777777
Q ss_pred hHHHHHHHHHHHHc----CCCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCCHHHHHHHHHHHHhcC
Q 009506 194 GEDTLSVYREMKEK----GMQL--SVTLYNTLLAMCADVGYTDEAFEIFEDMKSS----ENCQPDSWTFSSMITICSCRG 263 (533)
Q Consensus 194 ~~~a~~~~~~m~~~----g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~p~~~~~~~li~~~~~~g 263 (533)
+++|...+++..+. +-.+ ....+..+...+...|++++|.+.+++.... +....-..++..+...|...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 77777666655442 2111 2344555666666666666666666554421 100001223455555566666
Q ss_pred ChHHHHHHHHHHH
Q 009506 264 KVSEAEAMFNEML 276 (533)
Q Consensus 264 ~~~~A~~~~~~m~ 276 (533)
++++|.+.+++..
T Consensus 162 ~~~~A~~~~~~al 174 (203)
T 3gw4_A 162 NLLEAQQHWLRAR 174 (203)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 6666666655543
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=0.00019 Score=68.84 Aligned_cols=252 Identities=10% Similarity=-0.007 Sum_probs=154.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 009506 145 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR-YGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 223 (533)
Q Consensus 145 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 223 (533)
.++.+-....+.+..++|+++++.++... +-+..+|+.--..+...| .+++++++++.+.....+ +..+|+.-...+
T Consensus 56 ~~~~~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL 133 (349)
T 3q7a_A 56 AMDYFRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLL 133 (349)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 34444444455566678999999998764 345667887777777778 589999999999987666 788888887777
Q ss_pred Hhc-C-CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChH--------HHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 009506 224 ADV-G-YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS--------EAEAMFNEMLEAGFEPNLFVLTSLIQC 293 (533)
Q Consensus 224 ~~~-g-~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~~~~~li~~ 293 (533)
.+. + ++++++++++.+.+.. +.|...|+.-.-.+.+.|.++ ++.+.++++.+.. .-|...|+-....
T Consensus 134 ~~l~~~~~~~EL~~~~k~L~~d--pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~l 210 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHGSLLPD--PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYL 210 (349)
T ss_dssp HHHCCSCCHHHHHHHHHHTSSC--TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHhcCCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 776 6 8889999999988765 567888877666666666666 7888888887754 3467777777777
Q ss_pred HHhcCC-------hhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCChhHHHHHHHHhhhhhc
Q 009506 294 YGKAQR-------TDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEG 366 (533)
Q Consensus 294 ~~~~g~-------~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 366 (533)
+.+.++ ++++++.+.+....... |...|+-+-..+.+.|....--+. ..-|.....++.. ..
T Consensus 211 L~~l~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~----~~~~~~~~~~~~~------~~ 279 (349)
T 3q7a_A 211 RVSRPGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILP----AILPYTASKLNPD------IE 279 (349)
T ss_dssp HTTSTTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHH----HHGGGTC--------------
T ss_pred HHhccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccc----ccccccccccccc------ch
Confidence 766665 45666666666554322 444554444443333321000000 0000000000000 00
Q ss_pred cHHHHHHHHHhhhc----cCccchhhHHHHHHHHhcCCHHHHHHHHHHHH
Q 009506 367 DFKKEATELFNSIS----KDVKKAYCNCLIDLCVNLNLLENACKLLELGL 412 (533)
Q Consensus 367 ~~~~~a~~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 412 (533)
+..+.+.++..... .......+..|++.|...|+.++|.++++.+.
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~ 329 (349)
T 3q7a_A 280 TVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLS 329 (349)
T ss_dssp ------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 11122222222110 01344477889999999999999999999875
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.39 E-value=1e-05 Score=65.41 Aligned_cols=97 Identities=10% Similarity=0.076 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009506 108 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 187 (533)
Q Consensus 108 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 187 (533)
...+..+...+...|++++|+..|++..... +.+...|..+...+...|++++|++.+++..+.. +.+...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence 3344444444444444444444444444321 1233344444444444444444444444444321 1223333333334
Q ss_pred HHhcCChHHHHHHHHHHHH
Q 009506 188 YGRARYGEDTLSVYREMKE 206 (533)
Q Consensus 188 ~~~~g~~~~a~~~~~~m~~ 206 (533)
|.+.|++++|...|++..+
T Consensus 90 ~~~~~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALE 108 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHh
Confidence 4444444444444443333
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.39 E-value=9.4e-06 Score=65.99 Aligned_cols=100 Identities=10% Similarity=-0.008 Sum_probs=51.3
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009506 106 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 185 (533)
Q Consensus 106 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 185 (533)
.+...|..+...+.+.|++++|+..|++..+.. +.+...|..+...+...|++++|++.|++..+.. +.+...+..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 91 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKA 91 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHH
Confidence 345555555555556666666666665555431 1244455555555555555555555555555432 22344444555
Q ss_pred HHHHhcCChHHHHHHHHHHHHc
Q 009506 186 RAYGRARYGEDTLSVYREMKEK 207 (533)
Q Consensus 186 ~~~~~~g~~~~a~~~~~~m~~~ 207 (533)
.+|.+.|++++|.+.|++..+.
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHh
Confidence 5555555555555555544443
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.37 E-value=4e-05 Score=72.02 Aligned_cols=97 Identities=7% Similarity=-0.088 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 009506 178 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 257 (533)
Q Consensus 178 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~ 257 (533)
...+..+...+.+.|++++|+..|++..+.... +...|..+...|.+.|++++|++.+++..+.. +.+...+..+..
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~ 80 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHFFLGQ 80 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 344445555555555555555555555554322 45555555555555555555555555555432 334555555555
Q ss_pred HHHhcCChHHHHHHHHHHHH
Q 009506 258 ICSCRGKVSEAEAMFNEMLE 277 (533)
Q Consensus 258 ~~~~~g~~~~A~~~~~~m~~ 277 (533)
+|...|++++|...|++..+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555555443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.36 E-value=1.6e-05 Score=64.20 Aligned_cols=115 Identities=17% Similarity=0.050 Sum_probs=49.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 009506 180 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 259 (533)
Q Consensus 180 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~ 259 (533)
.+..+...+...|++++|...|++..+.... +...+..+...+...|++++|.+.+++..... +.+...+..+...|
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICID--PAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC--ccCHHHHHHHHHHH
Confidence 3334444444444444444444444433211 33444444444444445555554444444332 22344444444455
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 009506 260 SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 298 (533)
Q Consensus 260 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 298 (533)
.+.|++++|.+.|++..+.. +.+...+..+..++.+.|
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLR 128 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHh
Confidence 55555555555554444322 113334444444444333
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.33 E-value=1.5e-05 Score=64.77 Aligned_cols=94 Identities=12% Similarity=0.039 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 009506 144 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 223 (533)
Q Consensus 144 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 223 (533)
..|..+...+...|++++|+..|++..+.. +.+..++..+...|...|++++|.+.+++..+.... +...+..+...+
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~ 94 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHHHHH
Confidence 334444444444444444444444444321 123334444444444444444444444444333211 333333344444
Q ss_pred HhcCCHHHHHHHHHHH
Q 009506 224 ADVGYTDEAFEIFEDM 239 (533)
Q Consensus 224 ~~~g~~~~A~~~~~~m 239 (533)
.+.|++++|.+.|++.
T Consensus 95 ~~~~~~~~A~~~~~~~ 110 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKA 110 (133)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHH
Confidence 4444444444444433
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.32 E-value=1.9e-05 Score=64.18 Aligned_cols=94 Identities=13% Similarity=0.050 Sum_probs=40.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 009506 111 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 190 (533)
Q Consensus 111 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 190 (533)
|......|.+.|++++|++.|++..+.. +.+...|..+..++.+.|++++|++.|++.++.. +.+...|..+..+|..
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHH
Confidence 4444444444444444444444444321 1234444444444444444444444444444322 2233444444444444
Q ss_pred cCChHHHHHHHHHHHH
Q 009506 191 ARYGEDTLSVYREMKE 206 (533)
Q Consensus 191 ~g~~~~a~~~~~~m~~ 206 (533)
.|++++|++.|++..+
T Consensus 94 ~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 94 MREWSKAQRAYEDALQ 109 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 4444444444444444
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.31 E-value=4.7e-06 Score=72.17 Aligned_cols=121 Identities=13% Similarity=0.063 Sum_probs=66.7
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCh--H
Q 009506 119 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA-YGRARYG--E 195 (533)
Q Consensus 119 ~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~g~~--~ 195 (533)
...|++++|+..|++..+.. +.+...|..+...|...|++++|+..|++..+.. +.+...+..+..+ |...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 34566666666666655432 2345566666666666666666666666665532 2344555555555 5556665 6
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 009506 196 DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 242 (533)
Q Consensus 196 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 242 (533)
+|...|++..+.... +...+..+...|...|++++|.+.|++..+.
T Consensus 99 ~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 666666666555332 4455555555666666666666666655553
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.31 E-value=2.6e-05 Score=63.43 Aligned_cols=89 Identities=11% Similarity=0.063 Sum_probs=34.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC
Q 009506 185 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 264 (533)
Q Consensus 185 l~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 264 (533)
...|.+.|++++|++.|++..+.... +..+|..+..+|.+.|++++|++.|++..+.. +.+...|..+..+|...|+
T Consensus 20 G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~ 96 (126)
T 4gco_A 20 GNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLD--SKFIKGYIRKAACLVAMRE 96 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh--hhhhHHHHHHHHHHHHCCC
Confidence 33333344444444444333333221 33333333344444444444444443333322 2233334444444444444
Q ss_pred hHHHHHHHHHHH
Q 009506 265 VSEAEAMFNEML 276 (533)
Q Consensus 265 ~~~A~~~~~~m~ 276 (533)
+++|.+.|++..
T Consensus 97 ~~~A~~~~~~al 108 (126)
T 4gco_A 97 WSKAQRAYEDAL 108 (126)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444333
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.30 E-value=1.4e-05 Score=74.10 Aligned_cols=188 Identities=9% Similarity=-0.054 Sum_probs=125.1
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHH-------HHHHHhcCChhHHHHHHHHHHHCCCCCC---------------
Q 009506 120 TAGNFDGCLNVYEEMKAIGVKPNMITYNNL-------LDTMGRAKRPWQVKTIYKEMTDNGLSPN--------------- 177 (533)
Q Consensus 120 ~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l-------i~~~~~~g~~~~a~~~~~~m~~~g~~p~--------------- 177 (533)
..++...|++.|.++.+.. +-....|+.+ ...+.+.++..+++..+..-.+ +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 5789999999999998753 2356778777 3555555555555544444333 2221
Q ss_pred -------HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--C
Q 009506 178 -------WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP--D 248 (533)
Q Consensus 178 -------~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p--~ 248 (533)
...+-.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .| .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~--d~~~~ 170 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP--DKFLA 170 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS--CHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC--CcccH
Confidence 2334456677778888888888888877654 333355556667888888888888887554321 11 1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHhhhCC
Q 009506 249 SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN--LFVLTSLIQCYGKAQRTDDVVRALNRLPELG 314 (533)
Q Consensus 249 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 314 (533)
...+..+..++.+.|++++|+..|++.......|. .........++.+.|+.++|..+|+++....
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 23677778888888888888888888764332243 3355666677788888888888888887753
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=0.00023 Score=68.25 Aligned_cols=184 Identities=5% Similarity=0.003 Sum_probs=141.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009506 111 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK-RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 189 (533)
Q Consensus 111 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 189 (533)
++.+-....+.+..++|+++++++.... +-+..+||.--..+...| .+++++++++.+.... +-+..+|+.--..+.
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~ 134 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 3333333344556678999999998753 235667888777787888 5999999999999865 457788888777777
Q ss_pred hc-C-ChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 009506 190 RA-R-YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD--------EAFEIFEDMKSSENCQPDSWTFSSMITIC 259 (533)
Q Consensus 190 ~~-g-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~~~~~p~~~~~~~li~~~ 259 (533)
+. + ++++++++++.+.+...+ +-.+|+.-.-.+.+.|.++ ++++.++++.+.. .-|...|+.....+
T Consensus 135 ~l~~~~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d--p~N~SAW~~R~~lL 211 (349)
T 3q7a_A 135 RISPQDPVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD--GRNNSAWGWRWYLR 211 (349)
T ss_dssp HHCCSCCHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HhcCCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH
Confidence 76 7 889999999999987655 8888888777777766666 8999999998876 57899999988888
Q ss_pred HhcCC-------hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 009506 260 SCRGK-------VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 300 (533)
Q Consensus 260 ~~~g~-------~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 300 (533)
.+.+. ++++.+.++++.... +-|...|+-+-..+.+.|+.
T Consensus 212 ~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 212 VSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp TTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCC
T ss_pred HhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCC
Confidence 88876 688888888887753 34677787776666666654
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.30 E-value=6.4e-06 Score=72.80 Aligned_cols=157 Identities=10% Similarity=0.020 Sum_probs=108.0
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCC-cCHHHHHHHHHHHHhcCC
Q 009506 154 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK----GMQ-LSVTLYNTLLAMCADVGY 228 (533)
Q Consensus 154 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~-~~~~~~~~li~~~~~~g~ 228 (533)
...|++++|.++++.+... ......++..+...|...|++++|...+++..+. |.. ....+++.+...|...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 4678899999865555432 1235678888888899999999999998887662 222 234667778888899999
Q ss_pred HHHHHHHHHHHHhC----CCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhc
Q 009506 229 TDEAFEIFEDMKSS----ENCQP--DSWTFSSMITICSCRGKVSEAEAMFNEMLEA----GFEP-NLFVLTSLIQCYGKA 297 (533)
Q Consensus 229 ~~~A~~~~~~m~~~----~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~ 297 (533)
+++|.+.+++.... +. .+ ....+..+...+...|++++|...+++..+. +... -..++..+...|...
T Consensus 82 ~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 160 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPE-DPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE 160 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCc-cHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC
Confidence 99999988776542 21 11 2455778888888899999999988886542 1111 123456777788888
Q ss_pred CChhHHHHHHHHhhh
Q 009506 298 QRTDDVVRALNRLPE 312 (533)
Q Consensus 298 g~~~~a~~~~~~m~~ 312 (533)
|++++|...+++..+
T Consensus 161 g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 161 KNLLEAQQHWLRARD 175 (203)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 888888888877654
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.28 E-value=1.5e-05 Score=67.16 Aligned_cols=94 Identities=11% Similarity=-0.042 Sum_probs=40.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 009506 181 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 260 (533)
Q Consensus 181 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~ 260 (533)
+..+...+.+.|++++|+..|++..+.... +...|..+..+|...|++++|++.|++..+.. +.+...|..+..+|.
T Consensus 39 ~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~--P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 39 IYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG--KNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--SSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHH
Confidence 333444444444444444444444443322 34444444444444444444444444444332 223334444444444
Q ss_pred hcCChHHHHHHHHHHHH
Q 009506 261 CRGKVSEAEAMFNEMLE 277 (533)
Q Consensus 261 ~~g~~~~A~~~~~~m~~ 277 (533)
+.|++++|...|++..+
T Consensus 116 ~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 44444444444444433
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.27 E-value=1e-05 Score=68.13 Aligned_cols=97 Identities=11% Similarity=-0.062 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 009506 144 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 223 (533)
Q Consensus 144 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 223 (533)
..+..+...+.+.|++++|+..|++..+.. +-+...|..+..+|.+.|++++|+..|++..+.... +...|..+..+|
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~~ 114 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHH
Confidence 345555666666677777777776666543 335566666666666777777777777666665443 455666666667
Q ss_pred HhcCCHHHHHHHHHHHHhC
Q 009506 224 ADVGYTDEAFEIFEDMKSS 242 (533)
Q Consensus 224 ~~~g~~~~A~~~~~~m~~~ 242 (533)
.+.|++++|.+.|++..+.
T Consensus 115 ~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 7777777777777666653
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.27 E-value=1.8e-05 Score=76.64 Aligned_cols=127 Identities=7% Similarity=-0.093 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 009506 144 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN----------------WNTYASLLRAYGRARYGEDTLSVYREMKEK 207 (533)
Q Consensus 144 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----------------~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 207 (533)
..|..+...+.+.|++++|+..|++..+.. |+ ..+|..+..+|.+.|++++|+..|++..+.
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344555555555555555555555555432 11 245555555566666666666666655554
Q ss_pred CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHH-HHHHHHH
Q 009506 208 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA-EAMFNEM 275 (533)
Q Consensus 208 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A-~~~~~~m 275 (533)
... +...|..+..+|...|++++|++.|++..+.. +.+...+..+...+.+.|+.++| ..+|+.|
T Consensus 226 ~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 226 DSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY--PNNKAAKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 45555555556666666666666665555533 23455555555555555555555 2344444
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.26 E-value=1.9e-05 Score=76.39 Aligned_cols=130 Identities=9% Similarity=-0.043 Sum_probs=112.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 009506 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN----------------MITYNNLLDTMGRAKRPWQVKTIYKEMT 170 (533)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd----------------~~~~~~li~~~~~~g~~~~a~~~~~~m~ 170 (533)
+...|..+...|.+.|++++|+..|++..+.. |+ ...|..+..+|.+.|++++|+..|++.+
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 223 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL 223 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46678889999999999999999999998753 43 4889999999999999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 009506 171 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA-FEIFEDMK 240 (533)
Q Consensus 171 ~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~m~ 240 (533)
+.. +.+...|..+..+|...|++++|+..|++..+.... +...+..+...+.+.|+.++| .++++.|.
T Consensus 224 ~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 224 ELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 864 457889999999999999999999999999987554 678899999999999999988 44555554
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.26 E-value=9.8e-06 Score=70.12 Aligned_cols=99 Identities=11% Similarity=0.115 Sum_probs=51.0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCh--hHHHHHHHHHHHCCCCCCHHHHHH
Q 009506 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT-MGRAKRP--WQVKTIYKEMTDNGLSPNWNTYAS 183 (533)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~-~~~~g~~--~~a~~~~~~m~~~g~~p~~~~~~~ 183 (533)
+...|..+...|...|++++|+..|++..+.. +.+...|..+..+ +...|++ ++|+..|++..+.. +-+...+..
T Consensus 43 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~ 120 (177)
T 2e2e_A 43 NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQTRAMIDKALALD-SNEITALML 120 (177)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhC-CCcHHHHHH
Confidence 44555555555555555555555555554421 1234444444444 4455555 55555555555432 223445555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHc
Q 009506 184 LLRAYGRARYGEDTLSVYREMKEK 207 (533)
Q Consensus 184 ll~~~~~~g~~~~a~~~~~~m~~~ 207 (533)
+...|.+.|++++|...|++..+.
T Consensus 121 la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 121 LASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcccHHHHHHHHHHHHhh
Confidence 555555555555555555555544
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.26 E-value=2.8e-06 Score=80.07 Aligned_cols=99 Identities=6% Similarity=-0.047 Sum_probs=67.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009506 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 186 (533)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 186 (533)
+...+..+...+.+.|++++|+..|++..+.. +-+...|..+..++.+.|++++|+..+++..+.. +-+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 44566667777777777777777777776542 2256667777777777777777777777776543 345566777777
Q ss_pred HHHhcCChHHHHHHHHHHHHc
Q 009506 187 AYGRARYGEDTLSVYREMKEK 207 (533)
Q Consensus 187 ~~~~~g~~~~a~~~~~~m~~~ 207 (533)
+|.+.|++++|...|++..+.
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 777777777777777766553
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.19 E-value=8e-05 Score=58.68 Aligned_cols=59 Identities=15% Similarity=0.102 Sum_probs=23.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 009506 111 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 170 (533)
Q Consensus 111 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~ 170 (533)
+..+...+...|++++|+..|++..... +.+...|..+...+...|++++|...+++..
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 65 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTV 65 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 3344444444444444444444443321 1133333333344444444444444444433
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=8.4e-06 Score=68.49 Aligned_cols=53 Identities=15% Similarity=0.049 Sum_probs=19.8
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009506 186 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 239 (533)
Q Consensus 186 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 239 (533)
..+.+.|++++|+..|++....... +...|..+..+|...|++++|++.|++.
T Consensus 29 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~a 81 (148)
T 2vgx_A 29 FNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYG 81 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3333334444444333333333221 3333333333333334444444444333
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=8.4e-06 Score=68.48 Aligned_cols=99 Identities=13% Similarity=0.068 Sum_probs=78.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 009506 212 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 291 (533)
Q Consensus 212 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 291 (533)
+...+..+...+.+.|++++|+..|++..... +.+...|..+..+|...|++++|...|++..... +.+...+..+.
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg 96 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD--HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAA 96 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHH
Confidence 45566777788888899999999998887754 4578888888888888999999999998887753 23567777888
Q ss_pred HHHHhcCChhHHHHHHHHhhhC
Q 009506 292 QCYGKAQRTDDVVRALNRLPEL 313 (533)
Q Consensus 292 ~~~~~~g~~~~a~~~~~~m~~~ 313 (533)
.+|...|++++|...|++..+.
T Consensus 97 ~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 97 ECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 8888888988888888887654
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.14 E-value=0.0001 Score=58.06 Aligned_cols=113 Identities=11% Similarity=-0.027 Sum_probs=94.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 009506 142 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 221 (533)
Q Consensus 142 d~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 221 (533)
+...|..+...+...|++++|...|++..+.. +.+...+..+...|.+.|++++|...+++..+.... +...+..+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHH
Confidence 34577888899999999999999999998754 447888999999999999999999999999887544 6888999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 009506 222 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 258 (533)
Q Consensus 222 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~ 258 (533)
.+...|++++|.+.|++..+.. +.+...+..+...
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~ 115 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHE--ANNPQLKEGLQNM 115 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC--TTCHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHcC--CCCHHHHHHHHHh
Confidence 9999999999999999998764 3455565555443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.12 E-value=5.8e-05 Score=69.96 Aligned_cols=198 Identities=10% Similarity=0.046 Sum_probs=141.5
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHH-------HHHHHhcCChHHHHHHHHHHHH------------cCCC----c
Q 009506 155 RAKRPWQVKTIYKEMTDNGLSPNWNTYASL-------LRAYGRARYGEDTLSVYREMKE------------KGMQ----L 211 (533)
Q Consensus 155 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l-------l~~~~~~g~~~~a~~~~~~m~~------------~g~~----~ 211 (533)
..++...|.+.|.+..+.. +-....|+.+ ...+.+.++..+++..+..-.+ .|+- .
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 6899999999999999864 3456777777 4555555555555555544433 1210 0
Q ss_pred ----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----
Q 009506 212 ----SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN---- 283 (533)
Q Consensus 212 ----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---- 283 (533)
-...+-.+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+..... |+
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~---~d~~~~ 170 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW---PDKFLA 170 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC---SCHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc---CCcccH
Confidence 0234455667788899999999999988764 354446667777899999999999999855442 32
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCC--HHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHHHHHHHH
Q 009506 284 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD--DRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLE 360 (533)
Q Consensus 284 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~ 360 (533)
...+..+-.++.+.|++++|+..|++.......|. .........++.+.|+ ++|..+|+.+...+|+ ..+...|..
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~ 249 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD 249 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence 23677788899999999999999999986544354 2345556667778888 9999999999999988 555455543
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=0.0023 Score=60.92 Aligned_cols=237 Identities=8% Similarity=0.070 Sum_probs=150.6
Q ss_pred HHHHHHHHH---HHHcCChH-HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCC----------hhHHHHHHHHHHHCC
Q 009506 109 NAFSTLIKL---YGTAGNFD-GCLNVYEEMKAIGVKPN-MITYNNLLDTMGRAKR----------PWQVKTIYKEMTDNG 173 (533)
Q Consensus 109 ~~~~~li~~---~~~~g~~~-~A~~~~~~m~~~g~~pd-~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~g 173 (533)
..|..+... ..+.|.+. +|+++++.+... .|+ ..+||.=-..+...+. +++++.+++.+....
T Consensus 27 ~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~ 104 (331)
T 3dss_A 27 KLYQSATQAVFQKRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN 104 (331)
T ss_dssp HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC
Confidence 334444443 34566665 799999999874 354 4456654333333222 567888888888753
Q ss_pred CCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCCHH
Q 009506 174 LSPNWNTYASLLRAYGRAR--YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY-TDEAFEIFEDMKSSENCQPDSW 250 (533)
Q Consensus 174 ~~p~~~~~~~ll~~~~~~g--~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~~p~~~ 250 (533)
+-+..+|+.-.-.+.+.+ .+++++.+++.+.+.... |-..|+.-.-.+...|. ++++++.++.+.+.. +-|..
T Consensus 105 -PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~--p~N~S 180 (331)
T 3dss_A 105 -PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--FSNYS 180 (331)
T ss_dssp -TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--SCCHH
T ss_pred -CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC--CCCHH
Confidence 457778887777777777 478899999999887655 78888887777778887 688888888888765 56777
Q ss_pred HHHHHHHHHHhc--------------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----------CChhHHHH
Q 009506 251 TFSSMITICSCR--------------GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA-----------QRTDDVVR 305 (533)
Q Consensus 251 ~~~~li~~~~~~--------------g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~-----------g~~~~a~~ 305 (533)
.|+.....+.+. +.++++.+.++...... +-|...|+-+-..+.+. +.++++++
T Consensus 181 AW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~ 259 (331)
T 3dss_A 181 SWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELE 259 (331)
T ss_dssp HHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHH
Confidence 777666665554 34677888887776643 33566666554444443 34667777
Q ss_pred HHHHhhhCCCCCCHH-HHHHHH---HHHhcCCh-HHHHHHHHHHHhcCCChhHH
Q 009506 306 ALNRLPELGITPDDR-FCGCLL---NVMTQTPK-EELGKLVECVEKSNSKLGYV 354 (533)
Q Consensus 306 ~~~~m~~~g~~p~~~-~~~~ll---~~~~~~~~-~~a~~~~~~~~~~~~~~~~~ 354 (533)
.++++.+.. ||.. .+..++ .+....+. ++...++..+.+.+|.....
T Consensus 260 ~~~elle~~--pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~ 311 (331)
T 3dss_A 260 SCKELQELE--PENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY 311 (331)
T ss_dssp HHHHHHHHC--TTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHHHhhC--cccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhH
Confidence 777776643 4432 221111 12222333 56666666666666655443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.10 E-value=0.00021 Score=71.31 Aligned_cols=198 Identities=7% Similarity=-0.058 Sum_probs=139.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCC-C---------------HHHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCC
Q 009506 115 IKLYGTAGNFDGCLNVYEEMKAIGVKP-N---------------MITYNNLLDTMGRAKRPWQVKTIYKEMTDN-GLSPN 177 (533)
Q Consensus 115 i~~~~~~g~~~~A~~~~~~m~~~g~~p-d---------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~ 177 (533)
...+.+.|++++|++.|.++.+..... + ...+..|...|...|++++|.+.+..+... +-.++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 445678899999999999998742111 1 124778899999999999999999887642 11122
Q ss_pred H----HHHHHHHHHHHhcCChHHHHHHHHHHHH----cCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC
Q 009506 178 W----NTYASLLRAYGRARYGEDTLSVYREMKE----KGMQL-SVTLYNTLLAMCADVGYTDEAFEIFEDMKSS----EN 244 (533)
Q Consensus 178 ~----~~~~~ll~~~~~~g~~~~a~~~~~~m~~----~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~ 244 (533)
. .+.+.+-..+...|+.+.+..++.+... .+..+ -..++..+...|...|++++|..++++.... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 2 2233344445567899999999887754 23222 2567788899999999999999999876542 11
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCC-C-C--HHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 009506 245 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA--GFE-P-N--LFVLTSLIQCYGKAQRTDDVVRALNRLPE 312 (533)
Q Consensus 245 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~-p-~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 312 (533)
-.....+|..++..|...|++++|..++++.... .+. | . ...+..+...+...|++++|...|.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 0113567889999999999999999999886542 111 1 1 24566667777888999999988877643
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.09 E-value=0.00014 Score=60.13 Aligned_cols=109 Identities=6% Similarity=0.006 Sum_probs=85.6
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 009506 106 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN----MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 181 (533)
Q Consensus 106 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 181 (533)
.+...+..+...+.+.|++++|+..|++..+. .|+ ...|..+..++...|++++|+..|++..+.. +.+...+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence 35677888999999999999999999999874 466 5778888888889999999999998888753 3467778
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHH
Q 009506 182 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNT 218 (533)
Q Consensus 182 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 218 (533)
..+..+|...|++++|...|++..+.... +...+..
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~ 138 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLEPK-NKVFQEA 138 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSS-CHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHH
Confidence 88888888888888888888888776432 3444433
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.09 E-value=0.00011 Score=59.28 Aligned_cols=91 Identities=12% Similarity=0.010 Sum_probs=38.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc
Q 009506 183 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 262 (533)
Q Consensus 183 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 262 (533)
.+...+.+.|++++|+..|++..+.... +...|..+..+|.+.|++++|++.|++..+.. +.+...|..+..+|...
T Consensus 9 ~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~ 85 (126)
T 3upv_A 9 LEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD--PNFVRAYIRKATAQIAV 85 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHH
Confidence 3333444444444444444444433221 33444444444444444444444444444332 22344444444444444
Q ss_pred CChHHHHHHHHHHH
Q 009506 263 GKVSEAEAMFNEML 276 (533)
Q Consensus 263 g~~~~A~~~~~~m~ 276 (533)
|++++|...|++..
T Consensus 86 ~~~~~A~~~~~~al 99 (126)
T 3upv_A 86 KEYASALETLDAAR 99 (126)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHH
Confidence 44444444444433
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.08 E-value=9.3e-05 Score=62.98 Aligned_cols=96 Identities=13% Similarity=0.005 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 009506 179 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 258 (533)
Q Consensus 179 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~ 258 (533)
..+..+...|.+.|++++|+..|++..+.... +...|..+..+|.+.|++++|++.|++..+.. +.+...|..+..+
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVD--PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 34444555555555555555555555544322 44555555555555555555555555555443 2345555555555
Q ss_pred HHhcCChHHHHHHHHHHHH
Q 009506 259 CSCRGKVSEAEAMFNEMLE 277 (533)
Q Consensus 259 ~~~~g~~~~A~~~~~~m~~ 277 (533)
|.+.|++++|.+.|++..+
T Consensus 89 ~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHH
Confidence 5555555555555555544
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.07 E-value=4.8e-05 Score=61.35 Aligned_cols=28 Identities=14% Similarity=0.138 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 009506 250 WTFSSMITICSCRGKVSEAEAMFNEMLE 277 (533)
Q Consensus 250 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 277 (533)
.+|..+...|.+.|++++|.+.|++..+
T Consensus 80 ~~~~~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 80 KAYARIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3344444444444444444444444443
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.07 E-value=0.00011 Score=59.37 Aligned_cols=98 Identities=12% Similarity=0.058 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009506 108 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 187 (533)
Q Consensus 108 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 187 (533)
...|..+...+.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|+..|++..+.. +-+...|..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 3456667777777788888888887776642 2356677777777777777777777777777643 3346677777777
Q ss_pred HHhcCChHHHHHHHHHHHHc
Q 009506 188 YGRARYGEDTLSVYREMKEK 207 (533)
Q Consensus 188 ~~~~g~~~~a~~~~~~m~~~ 207 (533)
|...|++++|...|++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHh
Confidence 77777777777777776654
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.06 E-value=0.00011 Score=60.08 Aligned_cols=94 Identities=7% Similarity=-0.079 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 009506 179 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 258 (533)
Q Consensus 179 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~ 258 (533)
..+..+...+.+.|++++|...|++..+.... +...|..+...+...|++++|...|++..+.. +.+...|..+..+
T Consensus 10 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~ 86 (137)
T 3q49_B 10 QELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--chhHHHHHHHHHH
Confidence 33344444444444444444444444333221 33334444444444444444444444433322 2233344444444
Q ss_pred HHhcCChHHHHHHHHHH
Q 009506 259 CSCRGKVSEAEAMFNEM 275 (533)
Q Consensus 259 ~~~~g~~~~A~~~~~~m 275 (533)
|...|++++|...|++.
T Consensus 87 ~~~~~~~~~A~~~~~~a 103 (137)
T 3q49_B 87 QLEMESYDEAIANLQRA 103 (137)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHH
Confidence 44444444444444443
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.06 E-value=9.3e-05 Score=65.24 Aligned_cols=88 Identities=11% Similarity=0.026 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 009506 179 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 258 (533)
Q Consensus 179 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~ 258 (533)
.+|..+..+|.+.|++++|+..+++..+.... +...|..+..+|...|++++|++.|++..+.. +.+...+..+..+
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~ 165 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASLN--PNNLDIRNSYELC 165 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHH
Confidence 34444444555555555555555555444221 34445555555555555555555555544432 2234444444444
Q ss_pred HHhcCChHHHH
Q 009506 259 CSCRGKVSEAE 269 (533)
Q Consensus 259 ~~~~g~~~~A~ 269 (533)
+...++.+++.
T Consensus 166 ~~~~~~~~~~~ 176 (198)
T 2fbn_A 166 VNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHHHH
Confidence 44444444433
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.05 E-value=8.1e-05 Score=63.36 Aligned_cols=99 Identities=10% Similarity=0.012 Sum_probs=60.5
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009506 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 186 (533)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 186 (533)
+...|..+...|.+.|++++|+..|++..+.. +-+...|..+..+|.+.|++++|+..|++.++.. +-+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45566666666777777777777777666532 2255566666666666666666666666666543 234555666666
Q ss_pred HHHhcCChHHHHHHHHHHHHc
Q 009506 187 AYGRARYGEDTLSVYREMKEK 207 (533)
Q Consensus 187 ~~~~~g~~~~a~~~~~~m~~~ 207 (533)
+|.+.|++++|...|++..+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 666666666666666655554
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.05 E-value=9.8e-05 Score=65.11 Aligned_cols=132 Identities=9% Similarity=-0.032 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CC--------------HHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 009506 108 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK-PN--------------MITYNNLLDTMGRAKRPWQVKTIYKEMTDN 172 (533)
Q Consensus 108 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-pd--------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 172 (533)
...+..+...+.+.|++++|+..|++..+.... ++ ...|..+..+|...|++++|+..+++..+.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 455777888999999999999999999874211 11 278888999999999999999999999886
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHh
Q 009506 173 GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF-EIFEDMKS 241 (533)
Q Consensus 173 g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~ 241 (533)
. +.+...+..+..+|...|++++|...|++..+.... +...+..+...+...++.+++. ..|..+..
T Consensus 118 ~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 118 D-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp S-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHC-----------
T ss_pred C-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4 457889999999999999999999999999887543 6778888888887777777666 44555443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.04 E-value=0.00018 Score=59.44 Aligned_cols=98 Identities=8% Similarity=-0.101 Sum_probs=61.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHH
Q 009506 142 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN----WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYN 217 (533)
Q Consensus 142 d~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 217 (533)
+...+..+...+...|++++|++.|++..+. .|+ ...+..+...|.+.|++++|+..+++..+.... +...|.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHH
Confidence 4556666667777777777777777777654 344 455666666666666666666666666554322 455555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC
Q 009506 218 TLLAMCADVGYTDEAFEIFEDMKSS 242 (533)
Q Consensus 218 ~li~~~~~~g~~~~A~~~~~~m~~~ 242 (533)
.+..+|...|++++|.+.|++..+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 6666666666666666666665543
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.04 E-value=7.1e-05 Score=62.06 Aligned_cols=22 Identities=18% Similarity=0.068 Sum_probs=8.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHH
Q 009506 253 SSMITICSCRGKVSEAEAMFNE 274 (533)
Q Consensus 253 ~~li~~~~~~g~~~~A~~~~~~ 274 (533)
..+..+|...|++++|.+.|+.
T Consensus 90 ~~lg~~~~~~g~~~~A~~~~~~ 111 (142)
T 2xcb_A 90 FHAAECHLQLGDLDGAESGFYS 111 (142)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHH
Confidence 3333333333333333333333
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.01 E-value=6.2e-05 Score=58.78 Aligned_cols=91 Identities=15% Similarity=0.043 Sum_probs=37.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHh
Q 009506 219 LLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP--NLFVLTSLIQCYGK 296 (533)
Q Consensus 219 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~~ 296 (533)
+...+...|++++|...|++..+.. +.+...|..+...|...|++++|.+.|++..+.. +. +...+..+..+|.+
T Consensus 12 ~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~~~ 88 (112)
T 2kck_A 12 EGVLQYDAGNYTESIDLFEKAIQLD--PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADALRY 88 (112)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHHHHH
Confidence 3333444444444444444433322 2233344444444444444444444444443321 11 23444444444444
Q ss_pred c-CChhHHHHHHHHhhh
Q 009506 297 A-QRTDDVVRALNRLPE 312 (533)
Q Consensus 297 ~-g~~~~a~~~~~~m~~ 312 (533)
. |++++|.+.|++..+
T Consensus 89 ~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 89 IEGKEVEAEIAEARAKL 105 (112)
T ss_dssp CSSCSHHHHHHHHHHGG
T ss_pred HhCCHHHHHHHHHHHhh
Confidence 4 444444444444433
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.00 E-value=6.3e-05 Score=62.39 Aligned_cols=95 Identities=8% Similarity=-0.106 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009506 110 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 189 (533)
Q Consensus 110 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 189 (533)
.+..+...+.+.|++++|+..|++..... +.+...|..+..++.+.|++++|+..|++..+.. +-+...+..+..+|.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 34444555556666666666666555432 1244555555555556666666666666555532 233445555555555
Q ss_pred hcCChHHHHHHHHHHHH
Q 009506 190 RARYGEDTLSVYREMKE 206 (533)
Q Consensus 190 ~~g~~~~a~~~~~~m~~ 206 (533)
..|++++|...|+...+
T Consensus 98 ~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARA 114 (142)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555555544
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.00 E-value=0.00012 Score=59.51 Aligned_cols=104 Identities=10% Similarity=0.053 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCC----HHHH
Q 009506 214 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG--FEPN----LFVL 287 (533)
Q Consensus 214 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~----~~~~ 287 (533)
..+..+...+.+.|++++|++.|++..+.. +.+...|..+..+|.+.|++++|.+.|++..+.. ..++ ..+|
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~--p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD--PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 345555666666666666666666665543 3456666666666666666666666666655421 1111 2345
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHH
Q 009506 288 TSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 321 (533)
Q Consensus 288 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 321 (533)
..+..+|...|++++|++.|++..+. .||..+
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~ 118 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPEL 118 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHH
Confidence 55666666777777777777766542 344443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.98 E-value=8.7e-05 Score=57.88 Aligned_cols=99 Identities=10% Similarity=-0.014 Sum_probs=77.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--CHHHHHH
Q 009506 177 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP--DSWTFSS 254 (533)
Q Consensus 177 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p--~~~~~~~ 254 (533)
+...+..+...+.+.|++++|...|++..+.... +...|..+...+...|++++|.+.|++..+.. +. +...+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~ 81 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVI--EDEYNKDVWAA 81 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--CCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--cccchHHHHHH
Confidence 3456667777888888888888888888776543 67778888888888888888888888887754 34 5778888
Q ss_pred HHHHHHhc-CChHHHHHHHHHHHHc
Q 009506 255 MITICSCR-GKVSEAEAMFNEMLEA 278 (533)
Q Consensus 255 li~~~~~~-g~~~~A~~~~~~m~~~ 278 (533)
+...|.+. |++++|.+.++.....
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 88888888 8888888888887664
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=97.97 E-value=0.0002 Score=58.48 Aligned_cols=98 Identities=6% Similarity=-0.040 Sum_probs=54.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009506 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 186 (533)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 186 (533)
++..|..+...+.+.|++++|+..|++..... +.+...|..+..++...|++++|+..|++..+.. +.+...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 45556666666666666666666666655432 2234555555555556666666666665555432 223455555555
Q ss_pred HHHhcCChHHHHHHHHHHHH
Q 009506 187 AYGRARYGEDTLSVYREMKE 206 (533)
Q Consensus 187 ~~~~~g~~~~a~~~~~~m~~ 206 (533)
+|...|++++|...|++..+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 55555555555555555544
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.96 E-value=8.8e-05 Score=59.70 Aligned_cols=98 Identities=15% Similarity=0.152 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCC----HHHHH
Q 009506 109 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL--SPN----WNTYA 182 (533)
Q Consensus 109 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~p~----~~~~~ 182 (533)
..|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|+..|++..+..- .++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 445556666666666666666666665532 23455555556666666666666666665554320 111 34444
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHc
Q 009506 183 SLLRAYGRARYGEDTLSVYREMKEK 207 (533)
Q Consensus 183 ~ll~~~~~~g~~~~a~~~~~~m~~~ 207 (533)
.+..+|.+.|++++|.+.|++..+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 4455555555555555555554443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00015 Score=58.88 Aligned_cols=96 Identities=18% Similarity=0.103 Sum_probs=48.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCC----HHHHHHH
Q 009506 181 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN-CQPD----SWTFSSM 255 (533)
Q Consensus 181 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~p~----~~~~~~l 255 (533)
+..+...|.+.|++++|++.|++..+.... +...|+.+..+|.+.|++++|++.|++..+... ...+ ..+|..+
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 344444555555555555555555544322 444555555555555555555555554433210 0011 1245555
Q ss_pred HHHHHhcCChHHHHHHHHHHHH
Q 009506 256 ITICSCRGKVSEAEAMFNEMLE 277 (533)
Q Consensus 256 i~~~~~~g~~~~A~~~~~~m~~ 277 (533)
...|...|++++|.+.|++..+
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 5566666666666666666544
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.89 E-value=8.2e-05 Score=62.37 Aligned_cols=98 Identities=18% Similarity=0.057 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCC----
Q 009506 108 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK-PN----MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL-SPN---- 177 (533)
Q Consensus 108 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-pd----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~---- 177 (533)
..++..+...|...|++++|+..|++..+.... .+ ..++..+...+...|++++|.+.+++..+..- ..+
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 345777777888888888888888876542100 11 13556666666677777777777666553110 011
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009506 178 WNTYASLLRAYGRARYGEDTLSVYREMK 205 (533)
Q Consensus 178 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 205 (533)
..++..+...|...|++++|.+.+++..
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 116 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHL 116 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 2344445555555555555555555443
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=97.88 E-value=0.004 Score=63.31 Aligned_cols=94 Identities=9% Similarity=0.146 Sum_probs=67.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHH-CCCC-CCHHHHHHHHHH
Q 009506 111 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR-PWQVKTIYKEMTD-NGLS-PNWNTYASLLRA 187 (533)
Q Consensus 111 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~-~~~a~~~~~~m~~-~g~~-p~~~~~~~ll~~ 187 (533)
|...+..+-. |+++.|..+|++.... .|++..|...+.-..+.+. .+.+..+|+..+. -|.. .+...|...+..
T Consensus 18 yer~l~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f 94 (493)
T 2uy1_A 18 MEHARRLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEE 94 (493)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHH
Confidence 3334444332 8899999999999874 5899999999988877764 4567788888775 3533 467888888877
Q ss_pred HHh----cCChHHHHHHHHHHHHc
Q 009506 188 YGR----ARYGEDTLSVYREMKEK 207 (533)
Q Consensus 188 ~~~----~g~~~~a~~~~~~m~~~ 207 (533)
+.. .++++.+..+|++....
T Consensus 95 ~~~~~~~~~~~~~vR~iy~rAL~~ 118 (493)
T 2uy1_A 95 EGKIEDEQTRIEKIRNGYMRALQT 118 (493)
T ss_dssp TSSCSSHHHHHHHHHHHHHHHHTS
T ss_pred HHhchhhhHHHHHHHHHHHHHHhC
Confidence 643 46788899999998874
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00012 Score=61.30 Aligned_cols=132 Identities=11% Similarity=-0.045 Sum_probs=63.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCC-cC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCCHHH
Q 009506 181 YASLLRAYGRARYGEDTLSVYREMKEKGMQ-LS----VTLYNTLLAMCADVGYTDEAFEIFEDMKSS----ENCQPDSWT 251 (533)
Q Consensus 181 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~p~~~~ 251 (533)
+..+...|...|++++|...+++..+.... .+ ..++..+...+...|++++|.+.+++.... +........
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 344444444445555554444443321000 00 134445555555566666666655554321 100001334
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 009506 252 FSSMITICSCRGKVSEAEAMFNEMLEA----GFEP-NLFVLTSLIQCYGKAQRTDDVVRALNRLPE 312 (533)
Q Consensus 252 ~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 312 (533)
+..+...|...|++++|.+.+++..+. +..+ ....+..+...|...|++++|.+.+++..+
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 555566666666666666666654431 1111 123455566666667777777776666543
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=0.012 Score=55.91 Aligned_cols=139 Identities=6% Similarity=-0.043 Sum_probs=92.6
Q ss_pred HhcCChh-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 009506 154 GRAKRPW-QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY----------GEDTLSVYREMKEKGMQLSVTLYNTLLAM 222 (533)
Q Consensus 154 ~~~g~~~-~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~----------~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 222 (533)
.+.|.+. +|+++++.++... +-+..+|+.--..+...+. +++++.+++.+.....+ +..+|+.-...
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~wl 117 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWL 117 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 3455555 7899999888754 2334455543333332222 56778888888776555 77788877777
Q ss_pred HHhcC--CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 009506 223 CADVG--YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK-VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 297 (533)
Q Consensus 223 ~~~~g--~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 297 (533)
+.+.| .+++++++++.+.+.. +.|...|+.-.-++...|. ++++.+.++.+.+.. +-|...|+-....+.+.
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~d--prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l 192 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQL 192 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHH
T ss_pred HhccCcccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHh
Confidence 77777 4788888888888765 5677778777777777777 578888888887754 34566666555554443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00021 Score=72.56 Aligned_cols=116 Identities=9% Similarity=0.019 Sum_probs=49.5
Q ss_pred HhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHH
Q 009506 189 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 268 (533)
Q Consensus 189 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 268 (533)
.+.|++++|++.|++..+.... +..+|..+..+|.+.|++++|++.+++..+.. +.+...|..+..+|.+.|++++|
T Consensus 17 ~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 17 FKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHH
Confidence 3444445555555444443222 34444445555555555555555555544432 23444455555555555555555
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCChhHHHHHHH
Q 009506 269 EAMFNEMLEAGFEPNLFVLTSLIQC--YGKAQRTDDVVRALN 308 (533)
Q Consensus 269 ~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~a~~~~~ 308 (533)
.+.|++..+.. +-+...+..+..+ +.+.|++++|.+.++
T Consensus 94 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 55555544421 0111222222222 444455555555554
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00016 Score=58.15 Aligned_cols=14 Identities=14% Similarity=-0.073 Sum_probs=5.0
Q ss_pred HHhcCCHHHHHHHH
Q 009506 223 CADVGYTDEAFEIF 236 (533)
Q Consensus 223 ~~~~g~~~~A~~~~ 236 (533)
+...|++++|+..|
T Consensus 61 ~~~~g~~~~A~~~~ 74 (121)
T 1hxi_A 61 QAENEKDGLAIIAL 74 (121)
T ss_dssp HHHTTCHHHHHHHH
T ss_pred HHHcCCHHHHHHHH
Confidence 33333333333333
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00024 Score=57.09 Aligned_cols=95 Identities=8% Similarity=-0.088 Sum_probs=63.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 009506 111 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 190 (533)
Q Consensus 111 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 190 (533)
+..+...+.+.|++++|+..|++..+.. +-+...|..+..++...|++++|+..|++..+.. +-+...+..+..+|.+
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 4455666777777777777777776542 2256666677777777777777777777776643 2345666667777777
Q ss_pred cCChHHHHHHHHHHHHc
Q 009506 191 ARYGEDTLSVYREMKEK 207 (533)
Q Consensus 191 ~g~~~~a~~~~~~m~~~ 207 (533)
.|++++|+..|++..+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 98 EHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 77777777777766554
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.77 E-value=4.1e-05 Score=61.12 Aligned_cols=57 Identities=11% Similarity=0.042 Sum_probs=21.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009506 181 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 238 (533)
Q Consensus 181 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 238 (533)
+..+...|.+.|++++|+..|++..+.... +..++..+..++.+.|++++|++.|++
T Consensus 30 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 86 (117)
T 3k9i_A 30 YLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGVELLLK 86 (117)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 333333333344444444444433333222 233333333333444444444444333
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.0048 Score=61.25 Aligned_cols=232 Identities=9% Similarity=-0.061 Sum_probs=147.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHH----CCCCCC-HH
Q 009506 110 AFSTLIKLYGTAGNFDGCLNVYEEMKAI-GVKPNM----ITYNNLLDTMGRAKRPWQVKTIYKEMTD----NGLSPN-WN 179 (533)
Q Consensus 110 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~pd~----~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~p~-~~ 179 (533)
.+..|...|.+.|++++|.+.+..+... +..++. .+.+.+-..+...|+++++.++++.... .+..+. ..
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 4678999999999999999999987642 111222 1223333344456889999999988763 333333 46
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHc--CC---CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCC-C--H
Q 009506 180 TYASLLRAYGRARYGEDTLSVYREMKEK--GM---QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE--NCQP-D--S 249 (533)
Q Consensus 180 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~--g~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~p-~--~ 249 (533)
++..|...|...|++++|..++++.... +. .....+|..++..|...|++++|..+++...... ...| . .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 7888999999999999999999987653 11 1135678889999999999999999998765421 1012 1 3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHH----cCCCCCHHHHH----HHHHHHHhcCChhHHHHHHHHhh--hCCCCCCH
Q 009506 250 WTFSSMITICSCRGKVSEAEAMFNEMLE----AGFEPNLFVLT----SLIQCYGKAQRTDDVVRALNRLP--ELGITPDD 319 (533)
Q Consensus 250 ~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~~~~~----~li~~~~~~g~~~~a~~~~~~m~--~~g~~p~~ 319 (533)
..+..+...+...|++++|...|.+..+ .+......... .++-+....+..+.....+.... .....++.
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESFESYHNLTTHNSYEKACQVLKYMLLSKIMLNLIDDVKNILNAKYTKETYQSRGI 296 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHCSSSSTTCCCHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhccchhHHHhHHHHHHHHHHhcchhh
Confidence 5677778888899999999998887654 22222221111 11122222333344444443322 22233445
Q ss_pred HHHHHHHHHHhcCChHHHHHHH
Q 009506 320 RFCGCLLNVMTQTPKEELGKLV 341 (533)
Q Consensus 320 ~~~~~ll~~~~~~~~~~a~~~~ 341 (533)
..+..++.++....-....+.+
T Consensus 297 ~~~~~l~~~~~~~~l~~~~~~~ 318 (434)
T 4b4t_Q 297 DAMKAVAEAYNNRSLLDFNTAL 318 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHH
Confidence 5777788887766554444333
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.73 E-value=0.0005 Score=69.43 Aligned_cols=120 Identities=8% Similarity=-0.096 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 009506 143 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN----------------WNTYASLLRAYGRARYGEDTLSVYREMKE 206 (533)
Q Consensus 143 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----------------~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 206 (533)
...|..+...+.+.|++++|+..|++.++.. |+ ..+|..+..+|.+.|++++|+..|++..+
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 3456666677777777777777777776532 21 23444444444444444444444444444
Q ss_pred cCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHH
Q 009506 207 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 267 (533)
Q Consensus 207 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 267 (533)
.... +...|..+..+|...|++++|+..|++..+.. +.+...+..+..++.+.++.++
T Consensus 346 ~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~l~~~~~~~~~~~~ 403 (457)
T 1kt0_A 346 LDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN--PQNKAARLQISMCQKKAKEHNE 403 (457)
T ss_dssp HSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC------CHHHHHHHHHHHHHHHHH
T ss_pred cCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHH
Confidence 3222 34444444444444444444444444444322 1233334444444444444333
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.72 E-value=9.4e-05 Score=75.16 Aligned_cols=117 Identities=15% Similarity=-0.003 Sum_probs=67.5
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHH
Q 009506 153 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 232 (533)
Q Consensus 153 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 232 (533)
+.+.|++++|++.|++..+.. +-+..+|..+..+|.+.|++++|++.+++..+.... +...|..+..+|.+.|++++|
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHH
Confidence 345566666666666655532 234566666666666666666666666666665433 556666667777777777777
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHH--HHhcCChHHHHHHHH
Q 009506 233 FEIFEDMKSSENCQPDSWTFSSMITI--CSCRGKVSEAEAMFN 273 (533)
Q Consensus 233 ~~~~~~m~~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~~~~ 273 (533)
++.|++..+.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 94 ~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHS--TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 77777666543 2233344444444 667777777777776
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.72 E-value=0.0012 Score=52.90 Aligned_cols=89 Identities=7% Similarity=0.006 Sum_probs=36.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHH
Q 009506 115 IKLYGTAGNFDGCLNVYEEMKAIGVKPNM----ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN---WNTYASLLRA 187 (533)
Q Consensus 115 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~~ll~~ 187 (533)
...+.+.|++++|+..|+++.+.. |+. ..+..+..++.+.|++++|+..|++..+.. +.+ ..++..+..+
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHH
Confidence 334444455555555554444321 111 233334444444444444444444444321 111 2333334444
Q ss_pred HHhcCChHHHHHHHHHHHH
Q 009506 188 YGRARYGEDTLSVYREMKE 206 (533)
Q Consensus 188 ~~~~g~~~~a~~~~~~m~~ 206 (533)
|.+.|++++|...|+++.+
T Consensus 86 ~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 4444444444444444443
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00038 Score=70.27 Aligned_cols=129 Identities=11% Similarity=-0.018 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 009506 108 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN----------------MITYNNLLDTMGRAKRPWQVKTIYKEMTD 171 (533)
Q Consensus 108 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd----------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 171 (533)
...|..+...|.+.|++++|+..|++..+. .|+ ...|+.+..+|.+.|++++|+..|++.++
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 456888899999999999999999998874 233 57899999999999999999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHH-HHHHHH
Q 009506 172 NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFE-IFEDMK 240 (533)
Q Consensus 172 ~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~-~~~~m~ 240 (533)
.. +.+...|..+..+|.+.|++++|+..|++..+.... +...+..+...+.+.++.+++.+ ++..|.
T Consensus 346 ~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 346 LD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred cC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 64 457889999999999999999999999999887543 56778888888888888887764 444443
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.70 E-value=0.0012 Score=53.11 Aligned_cols=88 Identities=14% Similarity=-0.009 Sum_probs=36.2
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCcCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHH
Q 009506 187 AYGRARYGEDTLSVYREMKEKGMQLSV---TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD---SWTFSSMITICS 260 (533)
Q Consensus 187 ~~~~~g~~~~a~~~~~~m~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~---~~~~~~li~~~~ 260 (533)
.+.+.|++++|...|++..+.... +. ..+..+...+.+.|++++|.+.|++..... +.+ ...+..+..+|.
T Consensus 11 ~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 11 DALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHH
Confidence 333444444444444444433211 11 233334444444444444444444444322 111 333444444444
Q ss_pred hcCChHHHHHHHHHHHH
Q 009506 261 CRGKVSEAEAMFNEMLE 277 (533)
Q Consensus 261 ~~g~~~~A~~~~~~m~~ 277 (533)
+.|++++|...|+++.+
T Consensus 88 ~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 44444444444444443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.67 E-value=9.8e-05 Score=58.83 Aligned_cols=86 Identities=8% Similarity=0.050 Sum_probs=58.5
Q ss_pred cCChHHHHHHHHHHHHcCC--CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHH
Q 009506 191 ARYGEDTLSVYREMKEKGM--QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 268 (533)
Q Consensus 191 ~g~~~~a~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 268 (533)
.|++++|+..|++..+.+. +-+...|..+...|...|++++|++.|++..+.. +-+...+..+..+|.+.|++++|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF--PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHcCCHHHH
Confidence 4667777777777766531 2245667777777888888888888887777654 44577777777778888888888
Q ss_pred HHHHHHHHHc
Q 009506 269 EAMFNEMLEA 278 (533)
Q Consensus 269 ~~~~~~m~~~ 278 (533)
...|++..+.
T Consensus 81 ~~~~~~al~~ 90 (117)
T 3k9i_A 81 VELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888776653
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00045 Score=67.54 Aligned_cols=90 Identities=9% Similarity=-0.008 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 009506 213 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 292 (533)
Q Consensus 213 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 292 (533)
..+|..+..+|.+.|++++|++.+++..+.. +.+...|..+..+|...|++++|.+.|++..+.. +-+...+..+..
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~ 349 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEID--PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLK 349 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 4455555556666666666666666655543 3345556666666666666666666666655432 123444555555
Q ss_pred HHHhcCChhHHHH
Q 009506 293 CYGKAQRTDDVVR 305 (533)
Q Consensus 293 ~~~~~g~~~~a~~ 305 (533)
++...++.+++.+
T Consensus 350 ~~~~~~~~~~a~k 362 (370)
T 1ihg_A 350 VKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555443
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00062 Score=66.55 Aligned_cols=139 Identities=6% Similarity=-0.031 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009506 109 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 188 (533)
Q Consensus 109 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 188 (533)
..|..+...|.+.|++++|++.|++..+. .++. ......+++.+ . -+-+..+|..+..+|
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~----------~~~~~~~~~~~-------~-~~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGS----------RAAAEDADGAK-------L-QPVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHH----------HHHSCHHHHGG-------G-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcC----------ccccChHHHHH-------H-HHHHHHHHHHHHHHH
Confidence 44777788888888888888888887651 0000 00000010000 0 011234555666666
Q ss_pred HhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHH
Q 009506 189 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 268 (533)
Q Consensus 189 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 268 (533)
.+.|++++|++.+++..+.... +...|..+..+|...|++++|++.|++..+.. +.+...+..+...+.+.++.+++
T Consensus 284 ~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~--P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA--PEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666654332 45566666666666666666666666665543 23455556666666666665555
Q ss_pred HH
Q 009506 269 EA 270 (533)
Q Consensus 269 ~~ 270 (533)
.+
T Consensus 361 ~k 362 (370)
T 1ihg_A 361 EK 362 (370)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00031 Score=67.79 Aligned_cols=148 Identities=7% Similarity=-0.002 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009506 108 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 187 (533)
Q Consensus 108 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 187 (533)
...+..+...|.+.|++++|+..|++.... .|+...+ ...++.+++...+ . ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~-------~~~~~~~~~~~~l---~-------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMF-------QLYGKYQDMALAV---K-------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHH-------TCCHHHHHHHHHH---H-------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchhh-------hhcccHHHHHHHH---H-------HHHHHHHHHH
Confidence 445666666666777777777777776552 2433211 1222222222211 1 1256666667
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH-HHhcCChH
Q 009506 188 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI-CSCRGKVS 266 (533)
Q Consensus 188 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~-~~~~g~~~ 266 (533)
|.+.|++++|+..+++..+.... +...|..+..+|...|++++|++.|++..+.. +.+...+..+... ....+..+
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~--p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYA--PDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777766665432 56666666677777777777777776665532 2233334433333 22334455
Q ss_pred HHHHHHHHHHH
Q 009506 267 EAEAMFNEMLE 277 (533)
Q Consensus 267 ~A~~~~~~m~~ 277 (533)
.+.++|..|..
T Consensus 317 ~a~~~~~~~l~ 327 (338)
T 2if4_A 317 KQKEMYKGIFK 327 (338)
T ss_dssp -----------
T ss_pred HHHHHHHHhhC
Confidence 55555555543
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.0011 Score=56.11 Aligned_cols=63 Identities=19% Similarity=0.202 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 009506 213 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 277 (533)
Q Consensus 213 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 277 (533)
...|..+..+|.+.|++++|+..+++..+.. +.+...|..+..+|...|++++|...|++..+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKRE--ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 3455555566666666666666666655543 34455666666666666666666666666555
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.0014 Score=55.41 Aligned_cols=116 Identities=14% Similarity=0.084 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009506 108 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 187 (533)
Q Consensus 108 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 187 (533)
+..+......+.+.|++++|+..|++.... +............. +..+. +-+..+|..+..+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~------------~~~~~~~~~~~~~~--~~~~~----~~~~~~~~nla~~ 72 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTR------------LDTLILREKPGEPE--WVELD----RKNIPLYANMSQC 72 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------HHHHHHTSCTTSHH--HHHHH----HTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------------HHHhcccCCCCHHH--HHHHH----HHHHHHHHHHHHH
Confidence 445666677777777777777777776542 00000000000000 00000 1223456666666
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 009506 188 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 242 (533)
Q Consensus 188 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 242 (533)
|.+.|++++|+..+++..+.... +...|..+..+|...|++++|.+.|++....
T Consensus 73 ~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 73 YLNIGDLHEAEETSSEVLKREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 66677777777777666665433 5666666667777777777777777666653
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00027 Score=68.28 Aligned_cols=96 Identities=9% Similarity=0.016 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHH-H
Q 009506 145 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM-C 223 (533)
Q Consensus 145 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~-~ 223 (533)
.|+.+..+|.+.|++++|+..|++.++.. +.+...|..+..+|...|++++|+..|++..+.... +...+..+... .
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~ 309 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAE 309 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHH
Confidence 67888889999999999999999998754 347788999999999999999999999988765332 44455555544 3
Q ss_pred HhcCCHHHHHHHHHHHHhC
Q 009506 224 ADVGYTDEAFEIFEDMKSS 242 (533)
Q Consensus 224 ~~~g~~~~A~~~~~~m~~~ 242 (533)
...+..+++.++|..|...
T Consensus 310 ~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 310 QEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHhhCC
Confidence 3445677778888777653
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00076 Score=68.28 Aligned_cols=125 Identities=11% Similarity=0.023 Sum_probs=71.4
Q ss_pred HHhcCChHHHHHHHHHHHHc-----CC-Cc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCC-HHHHHH
Q 009506 188 YGRARYGEDTLSVYREMKEK-----GM-QL-SVTLYNTLLAMCADVGYTDEAFEIFEDMKS-----SENCQPD-SWTFSS 254 (533)
Q Consensus 188 ~~~~g~~~~a~~~~~~m~~~-----g~-~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~p~-~~~~~~ 254 (533)
+...|++++|+.++++..+. |. .| ...+++.|...|...|++++|+.++++..+ .|.-.|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44567777777777665542 11 11 245666777777777777777776665432 1211232 455667
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH---cCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 009506 255 MITICSCRGKVSEAEAMFNEMLE---AGFEPN----LFVLTSLIQCYGKAQRTDDVVRALNRLPE 312 (533)
Q Consensus 255 li~~~~~~g~~~~A~~~~~~m~~---~g~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 312 (533)
|...|...|++++|+.++++..+ .-+.|+ ..+.+.+-+++...+.+++|..+|.++++
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777766543 111122 23344455566666667777777766654
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=0.016 Score=59.88 Aligned_cols=168 Identities=11% Similarity=-0.031 Sum_probs=103.4
Q ss_pred hHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC
Q 009506 194 GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY----------TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 263 (533)
Q Consensus 194 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 263 (533)
.++|++.++++.+.... +..+|+.--..+.+.|+ ++++++.++.+.+.. +-+..+|+.-.-.+.+.|
T Consensus 45 ~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~--pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 45 DESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcc
Confidence 34566666666665444 45556555555555554 677777777776654 456666766666666667
Q ss_pred --ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcC--------
Q 009506 264 --KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ-RTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT-------- 332 (533)
Q Consensus 264 --~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-------- 332 (533)
+++++.+.++++.+.. +-|..+|+--...+.+.| .++++++.+.++.+.... |...|+....++.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccc
Confidence 5577777777777654 245666666666666666 677777777777665433 444554444443331
Q ss_pred ------Ch-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhc
Q 009506 333 ------PK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEG 366 (533)
Q Consensus 333 ------~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 366 (533)
+. +++.+.++.....+|+....+..+...+.+.+
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~ 240 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAE 240 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCC
T ss_pred cccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCC
Confidence 23 67777777777778877777665555554433
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00077 Score=68.21 Aligned_cols=125 Identities=9% Similarity=-0.050 Sum_probs=71.9
Q ss_pred HHhcCChhHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHc-----CC-Cc-CHHHHHH
Q 009506 153 MGRAKRPWQVKTIYKEMTDN---GLSPN----WNTYASLLRAYGRARYGEDTLSVYREMKEK-----GM-QL-SVTLYNT 218 (533)
Q Consensus 153 ~~~~g~~~~a~~~~~~m~~~---g~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-----g~-~~-~~~~~~~ 218 (533)
+-..|++++|+.++++.++. -+.++ ..+++.|...|...|++++|+.++++..+. |. .| ...+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34566666666666655531 11121 345666666666677777776666655431 21 12 2455666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 009506 219 LLAMCADVGYTDEAFEIFEDMKS-----SENCQPD-SWTFSSMITICSCRGKVSEAEAMFNEMLE 277 (533)
Q Consensus 219 li~~~~~~g~~~~A~~~~~~m~~-----~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 277 (533)
|...|...|++++|+.++++..+ .|.-.|+ ..+.+.+-.++...+.+++|+.+|..+.+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777665432 2211232 23345555666677777777777777765
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.37 E-value=0.0023 Score=53.58 Aligned_cols=96 Identities=10% Similarity=0.049 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--------H-----HHHHHHHHHHHhcCChhHHHHHHHHHHHC---
Q 009506 109 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN--------M-----ITYNNLLDTMGRAKRPWQVKTIYKEMTDN--- 172 (533)
Q Consensus 109 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd--------~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~~--- 172 (533)
..+......+.+.|++++|+..|++..+. .|+ . ..|+.+-.++.+.|++++|+..|++.++.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 44566667777888888888888887763 333 2 25666666666666666666666666542
Q ss_pred --CCCCC-HHHH----HHHHHHHHhcCChHHHHHHHHHHHH
Q 009506 173 --GLSPN-WNTY----ASLLRAYGRARYGEDTLSVYREMKE 206 (533)
Q Consensus 173 --g~~p~-~~~~----~~ll~~~~~~g~~~~a~~~~~~m~~ 206 (533)
.+.|+ ...| ...-.++...|++++|+..|++..+
T Consensus 90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 01233 2344 4445555555555555555554443
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0078 Score=49.31 Aligned_cols=84 Identities=8% Similarity=-0.095 Sum_probs=34.7
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh-
Q 009506 187 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD----VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC- 261 (533)
Q Consensus 187 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~- 261 (533)
.|...+.+++|.+.|++..+.| +...+..|-..|.. .+++++|++.|++..+.| +...+..|...|..
T Consensus 34 ~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g----~~~a~~~Lg~~y~~G 106 (138)
T 1klx_A 34 VSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN----DQDGCLILGYKQYAG 106 (138)
T ss_dssp HTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC----CHHHHHHHHHHHHCC
Confidence 3333334444444444444432 33334444444433 344444444444444322 23333444444444
Q ss_pred ---cCChHHHHHHHHHHHH
Q 009506 262 ---RGKVSEAEAMFNEMLE 277 (533)
Q Consensus 262 ---~g~~~~A~~~~~~m~~ 277 (533)
.+++++|.+.|++..+
T Consensus 107 ~g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 107 KGVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp SSSCCCHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHH
Confidence 4444444444444443
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0026 Score=52.28 Aligned_cols=113 Identities=10% Similarity=-0.044 Sum_probs=91.9
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHH
Q 009506 121 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR----ARYGED 196 (533)
Q Consensus 121 ~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~ 196 (533)
.+++++|++.|++..+.| .++.. |-..|...+.+++|++.|++..+.| +...+..|-..|.. .+++++
T Consensus 8 ~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred ccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHH
Confidence 357889999999998876 23333 6666667778888999999998875 67788888888887 789999
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCC
Q 009506 197 TLSVYREMKEKGMQLSVTLYNTLLAMCAD----VGYTDEAFEIFEDMKSSEN 244 (533)
Q Consensus 197 a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~ 244 (533)
|.+.|++..+.| +...+..|-..|.. .++.++|.+.|++..+.|.
T Consensus 80 A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 999999998876 67778888888888 8899999999999888763
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.014 Score=60.37 Aligned_cols=176 Identities=6% Similarity=-0.003 Sum_probs=138.0
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 009506 121 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR----------PWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 190 (533)
Q Consensus 121 ~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 190 (533)
....++|++.++++.... +-+..+|+.--.++...|+ ++++++.++.+.+.. +-+..+|+.-.-.+.+
T Consensus 42 ~~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 42 GELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSR 119 (567)
T ss_dssp TCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 334567899999998753 2245667776666666666 899999999999864 4577889888888888
Q ss_pred cC--ChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc-----
Q 009506 191 AR--YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG-YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR----- 262 (533)
Q Consensus 191 ~g--~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~----- 262 (533)
.+ +++++++.++++.+.... +..+|+.-...+.+.| .++++++.++++.+.. .-|...|+.....+.+.
T Consensus 120 l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~--p~n~saW~~r~~ll~~l~~~~~ 196 (567)
T 1dce_A 120 LPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--FSNYSSWHYRSCLLPQLHPQPD 196 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT--CCCHHHHHHHHHHHHHHSCCCC
T ss_pred cccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC--CCCccHHHHHHHHHHhhccccc
Confidence 89 669999999999998766 8899999888888889 8999999999998865 56888888877776663
Q ss_pred ---------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhH
Q 009506 263 ---------GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 302 (533)
Q Consensus 263 ---------g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 302 (533)
+.++++.+.+++..... +-|...|+-+-..+.+.++.++
T Consensus 197 ~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 197 SGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 55788999998877643 3457788887777777777444
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0033 Score=52.58 Aligned_cols=62 Identities=16% Similarity=0.085 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-CHHHH----HHHHHHHHhcCChHHHHHHHHHHH
Q 009506 215 LYNTLLAMCADVGYTDEAFEIFEDMKSS----ENCQP-DSWTF----SSMITICSCRGKVSEAEAMFNEML 276 (533)
Q Consensus 215 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~p-~~~~~----~~li~~~~~~g~~~~A~~~~~~m~ 276 (533)
.|+.+..++.+.|++++|+..+++..+. +.+.| +...| .....++...|++++|...|++..
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 4444445555555555555554444432 00122 23344 444555555555555555555443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00033 Score=54.64 Aligned_cols=92 Identities=12% Similarity=0.051 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-------HH
Q 009506 213 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN-------LF 285 (533)
Q Consensus 213 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-------~~ 285 (533)
...|..+...+.+.|++++|++.|++..+.. +.+...|..+..+|.+.|++++|.+.|++..+.. |+ ..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~ 79 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ--PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHHH
Confidence 3445555566666666666666666655543 3355566666666666666666666666655432 33 33
Q ss_pred HHHHHHHHHHhcCChhHHHHHHH
Q 009506 286 VLTSLIQCYGKAQRTDDVVRALN 308 (533)
Q Consensus 286 ~~~~li~~~~~~g~~~~a~~~~~ 308 (533)
.+..+..++...|+.+.|...|+
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhHHH
Confidence 44444445555555444444333
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0016 Score=51.23 Aligned_cols=77 Identities=16% Similarity=0.084 Sum_probs=37.1
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009506 197 TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 276 (533)
Q Consensus 197 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 276 (533)
|+..|++..+.... +...+..+...|...|++++|++.|++..+.. +.+...|..+..+|...|++++|...|++..
T Consensus 4 a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD--PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444443222 34445555555555555555555555544432 2334455555555555555555555555543
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0023 Score=49.65 Aligned_cols=92 Identities=9% Similarity=0.004 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC------HHH
Q 009506 178 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD------SWT 251 (533)
Q Consensus 178 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~------~~~ 251 (533)
...+..+...+.+.|++++|...|++..+.... +...|..+..+|.+.|++++|++.|++..+.. +.+ ...
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~ 80 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHHHH
Confidence 445555666666666666666666666655332 55666666666777777777777776666542 122 344
Q ss_pred HHHHHHHHHhcCChHHHHHHH
Q 009506 252 FSSMITICSCRGKVSEAEAMF 272 (533)
Q Consensus 252 ~~~li~~~~~~g~~~~A~~~~ 272 (533)
+..+..++...|+++.|.+.+
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHHhHhhhHhHH
Confidence 444555555555554444433
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0052 Score=45.48 Aligned_cols=21 Identities=14% Similarity=0.189 Sum_probs=7.8
Q ss_pred HHHHHHHhcCChHHHHHHHHH
Q 009506 254 SMITICSCRGKVSEAEAMFNE 274 (533)
Q Consensus 254 ~li~~~~~~g~~~~A~~~~~~ 274 (533)
.+...|.+.|++++|.+.|++
T Consensus 48 ~l~~~~~~~~~~~~A~~~~~~ 68 (91)
T 1na3_A 48 NLGNAYYKQGDYDEAIEYYQK 68 (91)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHH
Confidence 333333333333333333333
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.002 Score=50.66 Aligned_cols=62 Identities=13% Similarity=-0.007 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009506 178 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 240 (533)
Q Consensus 178 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 240 (533)
...+..+...|.+.|++++|+..|++..+.... +...|..+...|...|++++|.+.|++..
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444444444444444444444444443222 33444444444455555555555544443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0083 Score=44.34 Aligned_cols=61 Identities=16% Similarity=0.254 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 009506 110 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD 171 (533)
Q Consensus 110 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 171 (533)
.|..+...|.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|++.|++..+
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 34444444444444444444444444321 11333444444444444444444444444443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0041 Score=47.63 Aligned_cols=25 Identities=12% Similarity=0.177 Sum_probs=9.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 009506 181 YASLLRAYGRARYGEDTLSVYREMK 205 (533)
Q Consensus 181 ~~~ll~~~~~~g~~~~a~~~~~~m~ 205 (533)
+..+...|.+.|++++|+..|++..
T Consensus 10 ~~~lg~~~~~~g~~~~A~~~~~~al 34 (100)
T 3ma5_A 10 RYALAQEHLKHDNASRALALFEELV 34 (100)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3333333333333333333333333
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0056 Score=51.07 Aligned_cols=39 Identities=5% Similarity=-0.175 Sum_probs=18.9
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 009506 120 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 159 (533)
Q Consensus 120 ~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~ 159 (533)
+.+.+++|++.++...+.. +-+...|+.+-.++...+++
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~ 52 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQF 52 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhccc
Confidence 4445555555555554432 22445555555555554443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0059 Score=46.70 Aligned_cols=64 Identities=11% Similarity=0.121 Sum_probs=46.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 009506 212 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 277 (533)
Q Consensus 212 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 277 (533)
+...+..+...|.+.|++++|++.|++..+.. +.+...|..+..+|.+.|++++|.+.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD--PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55667777777777788888888887777654 34566777777777778888887777777654
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0037 Score=52.16 Aligned_cols=94 Identities=9% Similarity=0.025 Sum_probs=46.5
Q ss_pred ChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc
Q 009506 193 YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY----------TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 262 (533)
Q Consensus 193 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 262 (533)
.+++|.+.++...+.... +...|+.+..++...++ +++|+..|++..+.. +.+...|..+..+|...
T Consensus 17 ~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld--P~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 17 LFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID--PKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHh
Confidence 344444444444444322 44444444444444333 346666666655543 23455666666666554
Q ss_pred C-----------ChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 009506 263 G-----------KVSEAEAMFNEMLEAGFEPNLFVLTSLI 291 (533)
Q Consensus 263 g-----------~~~~A~~~~~~m~~~g~~p~~~~~~~li 291 (533)
| ++++|.+.|++..+. .|+...|..-+
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al 131 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSL 131 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 3 566666666665553 35544443333
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.70 E-value=0.084 Score=57.03 Aligned_cols=156 Identities=8% Similarity=0.018 Sum_probs=101.8
Q ss_pred HHHHHcCChHHHHH-HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 009506 116 KLYGTAGNFDGCLN-VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 194 (533)
Q Consensus 116 ~~~~~~g~~~~A~~-~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 194 (533)
......+++++|.+ ++..+ ++......++..+.+.|.+++|+++.+.-. .-...+...|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCH
Confidence 33446788888877 55221 212233777777888888888887663211 113445667888
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 009506 195 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 274 (533)
Q Consensus 195 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 274 (533)
+.|.++.+.+ .+...|..+...+.+.|+++.|++.|..+.. |..+...|...|+.+...++-+.
T Consensus 669 ~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d----------~~~l~~l~~~~~~~~~~~~~~~~ 732 (814)
T 3mkq_A 669 TLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD----------LESLFLLHSSFNNKEGLVTLAKD 732 (814)
T ss_dssp HHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC----------HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC----------hhhhHHHHHHcCCHHHHHHHHHH
Confidence 8888876443 2667888888888888888888888887753 44566666667777766666555
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 009506 275 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 311 (533)
Q Consensus 275 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 311 (533)
....|- ++.-..+|.+.|++++|.+++.++.
T Consensus 733 a~~~~~------~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 733 AETTGK------FNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp HHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHcCc------hHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 555431 2334445666777777777776654
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.20 E-value=0.1 Score=56.32 Aligned_cols=134 Identities=7% Similarity=0.139 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009506 108 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 187 (533)
Q Consensus 108 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 187 (533)
......++..+.+.|.+++|+++.++-. .-.......|++++|.++.+.+ .+...|..|...
T Consensus 629 ~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~ 690 (814)
T 3mkq_A 629 KDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDA 690 (814)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHH
Confidence 3344788888899999999988774321 1133456789999999886543 577899999999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHH
Q 009506 188 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 267 (533)
Q Consensus 188 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 267 (533)
+.+.++++.|++.|..+.+ |..+...|...|+.+...++-+.....|. ++.....|.+.|++++
T Consensus 691 al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~-------~~~A~~~~~~~g~~~~ 754 (814)
T 3mkq_A 691 SLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK-------FNLAFNAYWIAGDIQG 754 (814)
T ss_dssp HHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC-------HHHHHHHHHHHTCHHH
T ss_pred HHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc-------hHHHHHHHHHcCCHHH
Confidence 9999999999999998754 34455556667777777777666666553 3444555666677777
Q ss_pred HHHHHHHH
Q 009506 268 AEAMFNEM 275 (533)
Q Consensus 268 A~~~~~~m 275 (533)
|.+++.++
T Consensus 755 a~~~~~~~ 762 (814)
T 3mkq_A 755 AKDLLIKS 762 (814)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 76666543
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.13 E-value=0.068 Score=51.13 Aligned_cols=75 Identities=13% Similarity=0.056 Sum_probs=54.0
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHH
Q 009506 246 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 324 (533)
Q Consensus 246 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 324 (533)
+.+..+|..+.-.+...|++++|...+++....+ |+...|..+-..+.-.|+.++|.+.|.+.... .|...+|..
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~~ 348 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLYW 348 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHHH
Confidence 4567777777666676788888888888877764 67777767777777788888888888777664 466665543
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=95.99 E-value=0.023 Score=56.33 Aligned_cols=86 Identities=13% Similarity=0.062 Sum_probs=48.5
Q ss_pred CCHHHHHHHHHHHHhC--CCCCC---C-HHHHHHHHHHHHhcCChHHHHHHHHHHHH-----cC-CCCC-HHHHHHHHHH
Q 009506 227 GYTDEAFEIFEDMKSS--ENCQP---D-SWTFSSMITICSCRGKVSEAEAMFNEMLE-----AG-FEPN-LFVLTSLIQC 293 (533)
Q Consensus 227 g~~~~A~~~~~~m~~~--~~~~p---~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g-~~p~-~~~~~~li~~ 293 (533)
|++++|+.++++..+. ..+.| + ..+++.|..+|...|++++|+.++++..+ .| -.|+ ..+++.|...
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 4566666666554321 11122 2 35566666777777777777776666543 12 1122 3456666777
Q ss_pred HHhcCChhHHHHHHHHhhh
Q 009506 294 YGKAQRTDDVVRALNRLPE 312 (533)
Q Consensus 294 ~~~~g~~~~a~~~~~~m~~ 312 (533)
|...|++++|..+|++..+
T Consensus 392 ~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHH
Confidence 7777777777777766543
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=95.91 E-value=0.044 Score=54.37 Aligned_cols=64 Identities=5% Similarity=0.043 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 009506 214 TLYNTLLAMCADVGYTDEAFEIFEDMKS-----SENCQPD-SWTFSSMITICSCRGKVSEAEAMFNEMLE 277 (533)
Q Consensus 214 ~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 277 (533)
.+++.|...|...|++++|+.++++..+ .|.-.|+ ..+|+.|...|...|++++|+.+|++..+
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 4556666666666666666666655432 1211232 44566666666677777766666666543
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=95.90 E-value=0.077 Score=52.62 Aligned_cols=93 Identities=10% Similarity=-0.012 Sum_probs=61.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCC--CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCCC----HHH
Q 009506 220 LAMCADVGYTDEAFEIFEDMKSSE--NCQPD----SWTFSSMITICSCRGKVSEAEAMFNEMLEA---GFEPN----LFV 286 (533)
Q Consensus 220 i~~~~~~g~~~~A~~~~~~m~~~~--~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~----~~~ 286 (533)
+..+.+.|++++|++++++..+.. .+.|+ ..+++.|..+|...|++++|+.++++..+. -+.|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 445566778888888887776431 11222 456777888888888888888888776541 11122 456
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhh
Q 009506 287 LTSLIQCYGKAQRTDDVVRALNRLPE 312 (533)
Q Consensus 287 ~~~li~~~~~~g~~~~a~~~~~~m~~ 312 (533)
++.|...|...|++++|..++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 77777788888888888887777643
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=95.84 E-value=0.045 Score=54.28 Aligned_cols=94 Identities=10% Similarity=0.115 Sum_probs=73.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcC---CCc----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCC-HH
Q 009506 184 LLRAYGRARYGEDTLSVYREMKEKG---MQL----SVTLYNTLLAMCADVGYTDEAFEIFEDMKS-----SENCQPD-SW 250 (533)
Q Consensus 184 ll~~~~~~g~~~~a~~~~~~m~~~g---~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~p~-~~ 250 (533)
.+..+.+.|++++|+.++++..+.. +.+ ...+++.|...|...|++++|+.++++... .|.-.|+ ..
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 3555667899999999999887631 111 356899999999999999999999987654 2222333 56
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 009506 251 TFSSMITICSCRGKVSEAEAMFNEMLE 277 (533)
Q Consensus 251 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 277 (533)
+++.|...|...|++++|+.++++..+
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 789999999999999999999988654
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=95.78 E-value=0.037 Score=41.63 Aligned_cols=56 Identities=14% Similarity=0.140 Sum_probs=30.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 009506 221 AMCADVGYTDEAFEIFEDMKSSENCQPDSW-TFSSMITICSCRGKVSEAEAMFNEMLEA 278 (533)
Q Consensus 221 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~ 278 (533)
..+.+.|++++|++.|++..+.. +.+.. .|..+..+|...|++++|.+.|++..+.
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTE--PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC--SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 34445556666666665555432 23444 5555555666666666666666665543
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.60 E-value=0.82 Score=38.55 Aligned_cols=27 Identities=15% Similarity=0.172 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009506 213 VTLYNTLLAMCADVGYTDEAFEIFEDM 239 (533)
Q Consensus 213 ~~~~~~li~~~~~~g~~~~A~~~~~~m 239 (533)
...|..|.......|+++-|++.|...
T Consensus 34 ~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 34 SITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 344444444444444444444444443
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=95.53 E-value=0.28 Score=46.91 Aligned_cols=73 Identities=14% Similarity=0.137 Sum_probs=45.6
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 009506 211 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 288 (533)
Q Consensus 211 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 288 (533)
.+..+|..+...+...|++++|...+++.... .|+...|..+...+.-.|++++|.+.|++.... .|...+|.
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L---n~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDL---EMSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 35566666655555567777777777766664 356666666666666777777777777665553 35555543
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=95.53 E-value=0.058 Score=40.51 Aligned_cols=54 Identities=11% Similarity=0.060 Sum_probs=27.1
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCcCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009506 187 AYGRARYGEDTLSVYREMKEKGMQLSVT-LYNTLLAMCADVGYTDEAFEIFEDMKS 241 (533)
Q Consensus 187 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~ 241 (533)
.+.+.|++++|...|++..+.... +.. .|..+..+|...|++++|++.|++..+
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344455555555555555544322 334 455555555555555555555555544
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.04 E-value=1.4 Score=37.23 Aligned_cols=100 Identities=16% Similarity=0.160 Sum_probs=55.2
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 009506 118 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 197 (533)
Q Consensus 118 ~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 197 (533)
..+.|+++.|.++.+++ -+...|..|-....+.|+++-|.+.|.+... +..|.-.|.-.|+.+..
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence 34567777777766655 3556677777777777777777666665432 33444444455555554
Q ss_pred HHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009506 198 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 238 (533)
Q Consensus 198 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 238 (533)
.++-+.....| -+|.....+.-.|+++++.++|.+
T Consensus 80 ~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 80 SKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44443333332 133334444455666666666543
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=94.77 E-value=0.95 Score=41.55 Aligned_cols=94 Identities=12% Similarity=0.131 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHh-----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CC
Q 009506 229 TDEAFEIFEDMKSSENCQPD---SWTFSSMITICSC-----RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA-QR 299 (533)
Q Consensus 229 ~~~A~~~~~~m~~~~~~~p~---~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g~ 299 (533)
...|..++++..+. .|+ ...|..+...|.+ -|+.++|.+.|++..+.+-.-+..++....+.++.. |+
T Consensus 179 l~~A~a~lerAleL---DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 179 VHAAVMMLERACDL---WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHHH---CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHHHh---CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 46777888887774 454 6788899999988 499999999999988854212367777788888874 89
Q ss_pred hhHHHHHHHHhhhCCCC--CCHHHHHHH
Q 009506 300 TDDVVRALNRLPELGIT--PDDRFCGCL 325 (533)
Q Consensus 300 ~~~a~~~~~~m~~~g~~--p~~~~~~~l 325 (533)
.+++.+.+++....... |+....+.+
T Consensus 256 ~~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 256 RAGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp HHHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 99999999999887766 665554443
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=94.63 E-value=1.3 Score=35.34 Aligned_cols=65 Identities=15% Similarity=0.129 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 009506 214 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 280 (533)
Q Consensus 214 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 280 (533)
...+..++.+...|.-+.-.+++.++.... +|+......+..+|.+.|+..+|.+++.+.-+.|+
T Consensus 92 e~vd~ALd~lv~~~KkDqLdki~~~~l~n~--~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 92 EHVNKALDILVIQGKRDKLEEIGREILKNN--EVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC--C--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhccHhHHHHHHHHHhccC--CCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 344445555555555555555555543222 45555555555555555555555555555555553
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=94.54 E-value=0.86 Score=33.92 Aligned_cols=47 Identities=4% Similarity=-0.114 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009506 194 GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 241 (533)
Q Consensus 194 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 241 (533)
.++|..+|++..+.... +......+...+.+.|++++|++.|+.+.+
T Consensus 25 ~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 25 TDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34444444444444322 344444444444444555555554444444
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=93.89 E-value=0.32 Score=40.01 Aligned_cols=78 Identities=10% Similarity=0.037 Sum_probs=33.5
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHcCCCc--CHHHHHHHHHHHHhcCCHHHHHHHH
Q 009506 162 VKTIYKEMTDNGLSPNWNTYASLLRAYGRAR---YGEDTLSVYREMKEKGMQL--SVTLYNTLLAMCADVGYTDEAFEIF 236 (533)
Q Consensus 162 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~ 236 (533)
+.+-|.+..+.|. ++..+.-.+.-++++.+ +.++++.+|++..+.+ .| ....+-.|--+|.+.|++++|.+.+
T Consensus 17 ~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 17 FEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp HHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence 3333444333332 44444444444444444 3334555555444442 11 1222233333445555555555555
Q ss_pred HHHHh
Q 009506 237 EDMKS 241 (533)
Q Consensus 237 ~~m~~ 241 (533)
+.+.+
T Consensus 95 ~~lL~ 99 (152)
T 1pc2_A 95 RGLLQ 99 (152)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55444
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=93.78 E-value=0.45 Score=39.11 Aligned_cols=82 Identities=7% Similarity=-0.069 Sum_probs=53.1
Q ss_pred hHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCC--CHHHHHHHHHHHHhcCChHHH
Q 009506 194 GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG---YTDEAFEIFEDMKSSENCQP--DSWTFSSMITICSCRGKVSEA 268 (533)
Q Consensus 194 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~p--~~~~~~~li~~~~~~g~~~~A 268 (533)
+..+++-|.+..+.|. ++..+...+..++++.+ +.++++.+|++..+.. .| ....+-.|.-+|.+.|++++|
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~--~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG--SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--CccchHHHHHHHHHHHHHccCHHHH
Confidence 3445555655555554 46666666777777776 5567888887776653 23 344455566666777777777
Q ss_pred HHHHHHHHHc
Q 009506 269 EAMFNEMLEA 278 (533)
Q Consensus 269 ~~~~~~m~~~ 278 (533)
.+.++.+.+.
T Consensus 91 ~~y~~~lL~i 100 (152)
T 1pc2_A 91 LKYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 7777777763
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=93.75 E-value=2.1 Score=34.13 Aligned_cols=138 Identities=12% Similarity=0.040 Sum_probs=76.7
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 009506 156 AKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 235 (533)
Q Consensus 156 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 235 (533)
.|..++..++..+.... .+..-||.+|--....-+-+-..++++.+-.. .|. ..+|++......
T Consensus 20 dG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi~C 83 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVVEC 83 (172)
T ss_dssp TTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHHHH
T ss_pred hhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHHHH
Confidence 45555556666555542 24444444444444444444444444333221 111 123444444443
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCC
Q 009506 236 FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 315 (533)
Q Consensus 236 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 315 (533)
+-.+ ..+.......++.....|.-++-.+++..+.. +-+|++.....+..+|.+.|+..++.+++.+.-+.|+
T Consensus 84 ~~~~------n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 84 GVIN------NTLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHT------TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHh------cchHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 3332 23445556667777777777777777777533 2356777777777788888888888888777777775
Q ss_pred C
Q 009506 316 T 316 (533)
Q Consensus 316 ~ 316 (533)
+
T Consensus 157 k 157 (172)
T 1wy6_A 157 K 157 (172)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=93.74 E-value=0.39 Score=35.83 Aligned_cols=65 Identities=15% Similarity=0.030 Sum_probs=32.8
Q ss_pred CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 009506 212 SVTLYNTLLAMCADVGY---TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA 278 (533)
Q Consensus 212 ~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 278 (533)
|...+..+..++...++ .++|..+|++..+.. +-+......+...+.+.|++++|...|+++.+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d--p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE--PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 33444444444432222 455555555555543 334555555555555555555555555555543
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=93.61 E-value=0.7 Score=35.12 Aligned_cols=66 Identities=9% Similarity=-0.063 Sum_probs=42.2
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 009506 106 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG------VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD 171 (533)
Q Consensus 106 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 171 (533)
.++.-+..|...+.+.|++..|...|+...+.- -......+..|..++.+.|+++.|+..+++..+
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 345556667777777777777777777765420 123445666666666777777777777766665
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=93.45 E-value=0.81 Score=34.75 Aligned_cols=65 Identities=8% Similarity=-0.096 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 009506 143 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNG------LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 207 (533)
Q Consensus 143 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g------~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 207 (533)
..-+..|...+.+.+++..|...|+...+.- -.+...++..|..+|.+.|+++.|...+++..+.
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 3344455566666666666666666554320 1133445555555555666666666555555544
|
| >3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1 | Back alignment and structure |
|---|
Probab=93.22 E-value=0.23 Score=36.13 Aligned_cols=77 Identities=22% Similarity=0.286 Sum_probs=49.7
Q ss_pred eecccccChhhHHHHHHHHHHHHHHHHHcCCCCCCceEEEeeeccccccc-hhHHHHHHHHhhhcCCCCCCCCCCcceEE
Q 009506 429 SLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSD-KGLASVFESHLKELNAPFHDSPDKVGWFL 507 (533)
Q Consensus 429 ~~~l~~~~~g~~~~a~~~~~~~l~~~~~~g~~~p~~~~i~~~~~~~~~~~-~~l~~~~~~~L~~~~~~f~~~~~~~g~~~ 507 (533)
+++++++....|...+..++.+.....+.....+ .+.|++|.|.|+... .-++..+.+.|.+-.-.|.+ .|.|++.
T Consensus 2 ~lDLHGl~v~eA~~~l~~~l~~~~~~~~~~~g~~-~v~II~GkG~hS~~g~~~Lk~~V~~~L~~~~~~~~e--~n~G~l~ 78 (82)
T 3fau_A 2 SLDLHGLHVDEALEHLMRVLEKKTEEFKQNGGKP-YLSVITGRGNHSQGGVARIKPAVIKYLISHSFRFSE--IKPGCLK 78 (82)
T ss_dssp CEECTTSCHHHHHHHHHHHHHHHHHHHHHHCCCC-EEEEECCC---------CHHHHHHHHHHHTTCCEEE--EETTEEE
T ss_pred eEECCCCcHHHHHHHHHHHHHHHHHHhhccCCce-EEEEEECCCCCCCCCcchHHHHHHHHHHhCCCceee--CCCEEEE
Confidence 3688999999998888887765543222212233 578999999987531 23899999999998766653 5788876
Q ss_pred E
Q 009506 508 T 508 (533)
Q Consensus 508 ~ 508 (533)
.
T Consensus 79 V 79 (82)
T 3fau_A 79 V 79 (82)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=92.28 E-value=0.93 Score=41.61 Aligned_cols=91 Identities=10% Similarity=-0.013 Sum_probs=61.8
Q ss_pred hHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhc-----CChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhc-C
Q 009506 124 FDGCLNVYEEMKAIGVKPN---MITYNNLLDTMGRA-----KRPWQVKTIYKEMTDNGLSP--NWNTYASLLRAYGRA-R 192 (533)
Q Consensus 124 ~~~A~~~~~~m~~~g~~pd---~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~-g 192 (533)
...|..++++..+ +.|+ -..|..|...|.+. |+.++|.+.|++.++.. | +..++......+++. |
T Consensus 179 l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~Ln--P~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 179 VHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYC--SAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHC--CTTCSHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhC--CCCCchHHHHHHHHHHHhcC
Confidence 4566666766666 3455 45677777777774 78888888888877743 4 366777777777774 7
Q ss_pred ChHHHHHHHHHHHHcCCC--cCHHHHHH
Q 009506 193 YGEDTLSVYREMKEKGMQ--LSVTLYNT 218 (533)
Q Consensus 193 ~~~~a~~~~~~m~~~g~~--~~~~~~~~ 218 (533)
+.+++.+.+++....... |+....|.
T Consensus 255 d~~~a~~~L~kAL~a~p~~~P~~~lan~ 282 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPESVPHNKLLVI 282 (301)
T ss_dssp CHHHHHHHHHHHHHCCGGGCSSCHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCChhHHHH
Confidence 788888888877777665 55444443
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=91.70 E-value=3.2 Score=33.78 Aligned_cols=103 Identities=9% Similarity=0.079 Sum_probs=58.3
Q ss_pred CCHHHHHHHHHHHHHcCCh------HHHHHHHHHHHHCCCCCCHH-HHHHHHH------HHHhcCChhHHHHHHHHHHHC
Q 009506 106 IDPNAFSTLIKLYGTAGNF------DGCLNVYEEMKAIGVKPNMI-TYNNLLD------TMGRAKRPWQVKTIYKEMTDN 172 (533)
Q Consensus 106 ~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~g~~pd~~-~~~~li~------~~~~~g~~~~a~~~~~~m~~~ 172 (533)
-|..+|-..+...-+.|+. ++.+++|++.... ++|+.. .|..-|. .+...++.++|.++|+.+++.
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3677777777777777877 7777888777653 444421 0111110 012235666666666666543
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 009506 173 GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 210 (533)
Q Consensus 173 g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~ 210 (533)
.-.. ...|......=.+.|++..|.+++......+..
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 2122 455555555555666666666666666665554
|
| >2d9i_A NEDD4-binding protein 2; SMR domain, N4BP2, BCL-3 binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.68.8.1 | Back alignment and structure |
|---|
Probab=91.47 E-value=1.2 Score=33.28 Aligned_cols=78 Identities=21% Similarity=0.240 Sum_probs=56.8
Q ss_pred eeecccccChhhHHHHHHHHHHHHHHHHHcCCCCCCceEEEeeeccccccc-hhHHHHHHHHhhhcCCCCCCCCCCcceE
Q 009506 428 WSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSD-KGLASVFESHLKELNAPFHDSPDKVGWF 506 (533)
Q Consensus 428 ~~~~l~~~~~g~~~~a~~~~~~~l~~~~~~g~~~p~~~~i~~~~~~~~~~~-~~l~~~~~~~L~~~~~~f~~~~~~~g~~ 506 (533)
..++++++....|...+..++.............+ .+.|++|.|.|+... .-++..+.+.|.+....|. ..+.|.+
T Consensus 9 ~~lDLHGl~v~eA~~~L~~~L~~~~~~~~~~~g~~-~v~IIhGkG~hS~~g~~~Lk~~V~~~L~~~~~~~~--egg~Ga~ 85 (96)
T 2d9i_A 9 NVLDLHGLHVDEALEHLMRVLEKKTEEFKQNGGKP-YLSVITGRGNHSQGGVARIKPAVIKYLISHSFRFS--EIKPGCL 85 (96)
T ss_dssp CEEECTTSCHHHHHHHHHHHHHHHHHHHHHTTCCS-EEEEECCCSGGGTTCTTCHHHHHHHHHHHTTCCEE--CCSTTCE
T ss_pred CeEECCCCCHHHHHHHHHHHHHHHHHHHHhhCCCe-EEEEEECcCCCCCCCcchHHHHHHHHHhhCCCccc--cCCCcEE
Confidence 46799999999999999888776553333222233 689999999987543 3488999999999876664 3467777
Q ss_pred EE
Q 009506 507 LT 508 (533)
Q Consensus 507 ~~ 508 (533)
+.
T Consensus 86 ~V 87 (96)
T 2d9i_A 86 KV 87 (96)
T ss_dssp EE
T ss_pred EE
Confidence 64
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=89.87 E-value=3.8 Score=33.34 Aligned_cols=100 Identities=11% Similarity=0.147 Sum_probs=48.7
Q ss_pred CCHHHHHHHHHHHHhcCCh------hHHHHHHHHHHHCCCCCCHH-HHHHHHHHH------HhcCChHHHHHHHHHHHHc
Q 009506 141 PNMITYNNLLDTMGRAKRP------WQVKTIYKEMTDNGLSPNWN-TYASLLRAY------GRARYGEDTLSVYREMKEK 207 (533)
Q Consensus 141 pd~~~~~~li~~~~~~g~~------~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~------~~~g~~~~a~~~~~~m~~~ 207 (533)
-|..+|=..+...-+.|++ ++.+++|++.... ++|+.. .|...|..+ ...++.++|.++|+.++..
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3556666666666666777 6777777777653 445421 111111111 1224555555555555443
Q ss_pred CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 009506 208 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 242 (533)
Q Consensus 208 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 242 (533)
+-.- ...|-....--.+.|++..|.+++......
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~ 123 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVER 123 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhcc
Confidence 2221 334443334444455555555555554443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.65 E-value=1.7 Score=45.84 Aligned_cols=125 Identities=10% Similarity=0.064 Sum_probs=79.8
Q ss_pred HHHHHHHHhcCC-hhHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCC-hHHHHHHHHHHHHc------CCC-cCHH-
Q 009506 147 NNLLDTMGRAKR-PWQVKTIYKEMTDNGLSPNWNT--YASLLRAYGRARY-GEDTLSVYREMKEK------GMQ-LSVT- 214 (533)
Q Consensus 147 ~~li~~~~~~g~-~~~a~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~g~-~~~a~~~~~~m~~~------g~~-~~~~- 214 (533)
..|+..+...++ .+.|+.+|+++.+.. |...+ ..+++..+.+.++ --+|.+++.+..+. ... .+..
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 344555555666 577999999998764 43322 2334444444332 22344444443321 111 1211
Q ss_pred ---------HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 009506 215 ---------LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM 275 (533)
Q Consensus 215 ---------~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 275 (533)
..+.-.+-+...|+++.|+++-++....- +-+-.+|..|..+|.+.|+++.|+-.++.+
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a--PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA--LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC--chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 12222345677899999999999988753 456899999999999999999999999886
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=89.02 E-value=1.8 Score=34.19 Aligned_cols=20 Identities=5% Similarity=-0.021 Sum_probs=8.7
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 009506 222 MCADVGYTDEAFEIFEDMKS 241 (533)
Q Consensus 222 ~~~~~g~~~~A~~~~~~m~~ 241 (533)
++.+.|++++|.+.++.+.+
T Consensus 83 g~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 83 GNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHH
Confidence 34444444444444444433
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=88.77 E-value=6.4 Score=38.06 Aligned_cols=73 Identities=19% Similarity=0.151 Sum_probs=58.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCcCHHHHHH
Q 009506 145 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE-----KGMQLSVTLYNT 218 (533)
Q Consensus 145 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~~~~~~ 218 (533)
....++.++...|++++++..+..+.... +.+...|..+|.+|.+.|+..+|++.|+.+.+ .|+.|+..+-..
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 45667788888999999998888887653 56888999999999999999999999887654 588888765443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.64 E-value=5.1 Score=42.32 Aligned_cols=127 Identities=13% Similarity=0.093 Sum_probs=81.3
Q ss_pred HHHHHHHHHHcCC-hHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCC-hhHHHHHHHHHHHC------CCCC-CHH
Q 009506 111 FSTLIKLYGTAGN-FDGCLNVYEEMKAIGVKPNMIT--YNNLLDTMGRAKR-PWQVKTIYKEMTDN------GLSP-NWN 179 (533)
Q Consensus 111 ~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~pd~~~--~~~li~~~~~~g~-~~~a~~~~~~m~~~------g~~p-~~~ 179 (533)
-..|+..+...|+ ++.|+.+|+++.... |...+ ...+|..+...++ --+|.+++.+..+. ...+ +..
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~ 328 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDAD 328 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccc
Confidence 3445555555556 588999999998753 43333 2333333333332 22355555554421 1111 111
Q ss_pred ----------HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009506 180 ----------TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 240 (533)
Q Consensus 180 ----------~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 240 (533)
..+.=.+.+...|+++.|+++-++....-.. +-.+|..|..+|.+.|+++.|+-.++.+.
T Consensus 329 ~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 329 SARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 1222244566789999999999998887433 68899999999999999999999998874
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=87.98 E-value=2.3 Score=41.22 Aligned_cols=72 Identities=21% Similarity=0.219 Sum_probs=51.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh-----CCCCCCHHHHHH
Q 009506 252 FSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE-----LGITPDDRFCGC 324 (533)
Q Consensus 252 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~~~~ 324 (533)
...++..+...|++++|...+..+.... +-+...|..+|.+|.+.|+..+|++.|+++.+ .|+.|...+-..
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 3455667777788888887777766542 34677788888888888888888888777643 588888876553
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=87.25 E-value=6.4 Score=31.00 Aligned_cols=82 Identities=10% Similarity=0.009 Sum_probs=52.8
Q ss_pred hHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhCCCCCC--CHHHHHHHHHHHHhcCChHHH
Q 009506 194 GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDE---AFEIFEDMKSSENCQP--DSWTFSSMITICSCRGKVSEA 268 (533)
Q Consensus 194 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~~~~~p--~~~~~~~li~~~~~~g~~~~A 268 (533)
+..+.+-|.+....|. ++..+--.+..++.+..+... ++.+++++.+.+ .| .....-.|.-++.+.|++++|
T Consensus 17 l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~--~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG--SKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS--CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHhhhHHHH
Confidence 3445555555555454 466666666667777765554 788888777654 23 333444566677888888888
Q ss_pred HHHHHHHHHc
Q 009506 269 EAMFNEMLEA 278 (533)
Q Consensus 269 ~~~~~~m~~~ 278 (533)
.+.++.+.+.
T Consensus 94 ~~~~~~lL~~ 103 (126)
T 1nzn_A 94 LKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888887774
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=86.91 E-value=2.7 Score=31.42 Aligned_cols=50 Identities=18% Similarity=0.296 Sum_probs=33.3
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 009506 158 RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 207 (533)
Q Consensus 158 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 207 (533)
+.-+..+-++.+....+.|++.+..+.+++|.|.+++..|.++|+-++.+
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34455666666666666677777777777777777777777777766654
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=85.87 E-value=23 Score=33.17 Aligned_cols=24 Identities=4% Similarity=-0.139 Sum_probs=15.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Q 009506 390 CLIDLCVNLNLLENACKLLELGLT 413 (533)
Q Consensus 390 ~li~~~~~~g~~~~A~~l~~~m~~ 413 (533)
-.+--|.-.++...|..+++...+
T Consensus 192 RaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 192 RAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHH
Confidence 334446667788888777666543
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=85.44 E-value=5.5 Score=29.81 Aligned_cols=50 Identities=12% Similarity=0.184 Sum_probs=30.8
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC
Q 009506 264 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 313 (533)
Q Consensus 264 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 313 (533)
|.-+..+-++.+....+.|++....+.+++|.+.+++..|.++|+-++.+
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34455555555555566666666666666666666666666666666543
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=85.03 E-value=0.008 Score=58.96 Aligned_cols=262 Identities=11% Similarity=0.020 Sum_probs=147.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009506 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 186 (533)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 186 (533)
.+.+|..|..++.+.+++.+|++-|-+ . -|...|..+|.++.+.|.+++-++.+.-.++.. -+..+=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk--A----~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK--A----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC--C----SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh--C----CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHH
Confidence 355688888888888888888877722 1 466678889999999999998888776555442 34455578889
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChH
Q 009506 187 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 266 (533)
Q Consensus 187 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 266 (533)
+|++.+++.+.++++. .|+..-...+.+-|...|.++.|.-+|..+..- .-|...+.+.|++.
T Consensus 125 ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~----------akLAstLV~L~~yq 187 (624)
T 3lvg_A 125 ALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNF----------GRLASTLVHLGEYQ 187 (624)
T ss_dssp HHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCC----------TTTSSSSSSCSGGG
T ss_pred HHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccH----------HHHHHHHHHHHHHH
Confidence 9999888776544432 256666667777888888888887777655432 12222333444444
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHH
Q 009506 267 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVE 345 (533)
Q Consensus 267 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~ 345 (533)
.|.+.-++ .-++.||-.+-.+|...+.+..|...--.++-. +| ....|+..|-..|. ++...+++.-.
T Consensus 188 ~AVdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEagl 256 (624)
T 3lvg_A 188 AAVDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAAL 256 (624)
T ss_dssp SSTTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHT
T ss_pred HHHHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 44332111 134455555555665555555444433222211 11 11224444555555 55555555544
Q ss_pred hcCCChhHHHHHHHHhhhhhccHHHHHHHHHh----hhccC------ccchhhHHHHHHHHhcCCHHHHHH
Q 009506 346 KSNSKLGYVVKLLLEEQDIEGDFKKEATELFN----SISKD------VKKAYCNCLIDLCVNLNLLENACK 406 (533)
Q Consensus 346 ~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~----~~~~~------~~~~~~~~li~~~~~~g~~~~A~~ 406 (533)
......-.+.+-|+..|++-. .++..+.++ ++... .....|..++-.|.+-..++.|..
T Consensus 257 glErAHmGmFTELaILYsKY~--PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 257 GLERAHMGMFTELAILYSKFK--PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp TSTTCCHHHHHHHHHHHHSSC--TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred CCCchhHHHHHHHHHHHHhcC--HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 333333334444444444432 122222222 22211 123367777777877777776643
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=83.92 E-value=52 Score=35.62 Aligned_cols=256 Identities=11% Similarity=0.008 Sum_probs=118.7
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCChhHHHHHHHHHHHCC--CC-----CCHHHHHHHHHHHH
Q 009506 119 GTAGNFDGCLNVYEEMKAIGVKPNMITYN--NLLDTMGRAKRPWQVKTIYKEMTDNG--LS-----PNWNTYASLLRAYG 189 (533)
Q Consensus 119 ~~~g~~~~A~~~~~~m~~~g~~pd~~~~~--~li~~~~~~g~~~~a~~~~~~m~~~g--~~-----p~~~~~~~ll~~~~ 189 (533)
...|+.++++.+++.....+-..+..+-. .+--+....|..+++..++...+... +. +....-.++--+++
T Consensus 385 Ih~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla 464 (963)
T 4ady_A 385 IHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLA 464 (963)
T ss_dssp HTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHH
T ss_pred hccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHH
Confidence 34556666666555543211012322222 22233445565556777666655421 00 11111222222222
Q ss_pred hcCC-hHHHHHHHHHHHHcCCCcCHHH-HH--HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCh
Q 009506 190 RARY-GEDTLSVYREMKEKGMQLSVTL-YN--TLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 265 (533)
Q Consensus 190 ~~g~-~~~a~~~~~~m~~~g~~~~~~~-~~--~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 265 (533)
-.|. -+++.+.+..+....- .... .. +|...++-.|+-+....++..+.+.. .-+..-+..+.-++...|+.
T Consensus 465 ~~GS~~eev~e~L~~~L~dd~--~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~--~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 465 AMGSANIEVYEALKEVLYNDS--ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ--HGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp STTCCCHHHHHHHHHHHHTCC--HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS--CHHHHHHHHHHHHHHTTTCG
T ss_pred hcCCCCHHHHHHHHHHHhcCC--HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC--cHHHHHHHHHHHHhhhCCCh
Confidence 2332 2345555555544311 1111 11 22233445577777777777766532 12222223333344467888
Q ss_pred HHHHHHHHHHHHcCCCCCHH-HHH---HHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHh--cCCh-HHHH
Q 009506 266 SEAEAMFNEMLEAGFEPNLF-VLT---SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT--QTPK-EELG 338 (533)
Q Consensus 266 ~~A~~~~~~m~~~g~~p~~~-~~~---~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~-~~a~ 338 (533)
+.+..+.+.+... .+.. -|. ++.-+|+..|+.....+++..+.+. ++..+-...+-+++ ..|. +.+.
T Consensus 541 e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d---~~d~VRraAViaLGlI~~g~~e~v~ 614 (963)
T 4ady_A 541 ELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD---SNDDVRRAAVIALGFVLLRDYTTVP 614 (963)
T ss_dssp GGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTSSSCSSHH
T ss_pred HHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC---CcHHHHHHHHHHHHhhccCCHHHHH
Confidence 8888888877653 2322 222 3344566777877777788777654 23333333333333 3455 5555
Q ss_pred HHHHHHHhcCCChhHHH--HHHHHhhhhhccHHHHHHHHHhhhccCccch
Q 009506 339 KLVECVEKSNSKLGYVV--KLLLEEQDIEGDFKKEATELFNSISKDVKKA 386 (533)
Q Consensus 339 ~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~~a~~~~~~~~~~~~~~ 386 (533)
++++.+.+......... -.|+..+...++ .++.+++..+..+.+..
T Consensus 615 rlv~~L~~~~d~~VR~gAalALGli~aGn~~--~~aid~L~~L~~D~d~~ 662 (963)
T 4ady_A 615 RIVQLLSKSHNAHVRCGTAFALGIACAGKGL--QSAIDVLDPLTKDPVDF 662 (963)
T ss_dssp HHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC--HHHHHHHHHHHTCSSHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhccCCCc--HHHHHHHHHHccCCCHH
Confidence 66655444332222222 333333333332 56777777766544433
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=83.41 E-value=7.5 Score=30.82 Aligned_cols=49 Identities=18% Similarity=0.304 Sum_probs=34.2
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 009506 159 PWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 207 (533)
Q Consensus 159 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 207 (533)
.-+..+-++.+....+.|++.+..+.+++|.|.+++..|.++|+-.+.+
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K 117 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 117 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 3345556666666667777777777777777777777777777776654
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=81.87 E-value=33 Score=31.82 Aligned_cols=19 Identities=11% Similarity=-0.029 Sum_probs=12.6
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 009506 394 LCVNLNLLENACKLLELGL 412 (533)
Q Consensus 394 ~~~~~g~~~~A~~l~~~m~ 412 (533)
-|.-.|+...|..+|+...
T Consensus 197 ~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 197 NYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHTTBHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHH
Confidence 4556677777777777653
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=81.17 E-value=8.7 Score=30.46 Aligned_cols=62 Identities=11% Similarity=0.203 Sum_probs=37.5
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 009506 265 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 327 (533)
Q Consensus 265 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 327 (533)
.-+..+-++.+....+.|++....+.+.+|.+.+++..|.++|+-++.+ +.+...+|..+++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 3345555555555666777777777777777777777777777766543 2223334554443
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=80.97 E-value=44 Score=32.77 Aligned_cols=172 Identities=7% Similarity=0.067 Sum_probs=104.2
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHH----HhcCChhHH--HHHHHHHH--HCC-
Q 009506 104 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKA-IGVKPNMITYNNLLDTM----GRAKRPWQV--KTIYKEMT--DNG- 173 (533)
Q Consensus 104 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~pd~~~~~~li~~~----~~~g~~~~a--~~~~~~m~--~~g- 173 (533)
...+......++..|.+.|+++...+.+.-+.. +|..+.. -..++..+ ......+.- ..+.+... ..|
T Consensus 52 ~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~a--i~~~V~~~~~~l~~~~~~d~~~~~~~i~~l~~vte~k 129 (445)
T 4b4t_P 52 LASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS--IQYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTENK 129 (445)
T ss_dssp TTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHH--HHHHHHHHHHHHHHHCTTHHHHHHHHHHCCSSSSSCC
T ss_pred hhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccc
Confidence 455788888999999999999998888776654 3332222 23344333 223332221 11111111 011
Q ss_pred CCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCcC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHh---C
Q 009506 174 LSP---NWNTYASLLRAYGRARYGEDTLSVYREMKEK--GMQLS---VTLYNTLLAMCADVGYTDEAFEIFEDMKS---S 242 (533)
Q Consensus 174 ~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~--g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~ 242 (533)
+-. .......|...|-..|++.+|..++.++... |.... +..|...+..|...+++..|..++..+.. .
T Consensus 130 iflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~ 209 (445)
T 4b4t_P 130 IFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFK 209 (445)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcc
Confidence 111 1233456778888889999998888887542 22111 34666777888888888888888877642 1
Q ss_pred CCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 009506 243 ENCQPD--SWTFSSMITICSCRGKVSEAEAMFNEMLE 277 (533)
Q Consensus 243 ~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 277 (533)
....|+ ...|...+..+...+++.+|.+.|.+..+
T Consensus 210 ~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 210 NPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 111232 34566777788888888888888777654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 533 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.77 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.73 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.44 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.38 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.07 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.05 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.0 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.97 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.94 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.82 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.73 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.71 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.59 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.58 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.42 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.3 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.29 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.28 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.15 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.1 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.09 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.09 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.04 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.01 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 97.97 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.9 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.82 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.79 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.78 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.78 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.69 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.65 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.64 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.52 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.49 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.45 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.42 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.38 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.35 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.3 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.28 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.28 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.19 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.12 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.03 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 96.99 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.95 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 96.76 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.64 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.56 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 96.19 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 96.18 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 95.43 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 95.22 | |
| d2d9ia1 | 83 | Nedd4-binding protein 2 {Human (Homo sapiens) [Tax | 95.19 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 94.7 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 94.29 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 93.46 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 92.6 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 87.0 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 84.91 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 82.09 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=1.3e-15 Score=148.27 Aligned_cols=315 Identities=12% Similarity=0.022 Sum_probs=238.0
Q ss_pred HHhhHHHHHhhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 009506 91 KEKSYDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 170 (533)
Q Consensus 91 ~~~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~ 170 (533)
.+..++..+.+.. +-++..+..+...|.+.|++++|+..|++..+.. +-+..+|..+..++.+.|++++|+..+....
T Consensus 17 ~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~ 94 (388)
T d1w3ba_ 17 AAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHAL 94 (388)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcccccccccccccc
Confidence 4555666655442 2357777888888888888888888888877642 2356677788888888888888888888877
Q ss_pred HCCCCCCHHHHHHHHHHH----------------------------------HhcCChHHHHHHHHHHHHcCCCcCHHHH
Q 009506 171 DNGLSPNWNTYASLLRAY----------------------------------GRARYGEDTLSVYREMKEKGMQLSVTLY 216 (533)
Q Consensus 171 ~~g~~p~~~~~~~ll~~~----------------------------------~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 216 (533)
+... .+........... ...+....+...+......... +...+
T Consensus 95 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 172 (388)
T d1w3ba_ 95 RLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN-FAVAW 172 (388)
T ss_dssp HHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred cccc-ccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccCcc-hhHHH
Confidence 6532 2222222222222 2223333444444444433222 45677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 009506 217 NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 296 (533)
Q Consensus 217 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 296 (533)
..+...+...|++++|...+++..+.. +.+...|..+...+...|++++|...+++....+ ..+...+..+...+.+
T Consensus 173 ~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 249 (388)
T d1w3ba_ 173 SNLGCVFNAQGEIWLAIHHFEKAVTLD--PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYE 249 (388)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HhhcccccccCcHHHHHHHHHHHHHhC--cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHHH
Confidence 778888899999999999999887754 4567889999999999999999999999987754 3567788889999999
Q ss_pred cCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHH
Q 009506 297 AQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATEL 375 (533)
Q Consensus 297 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~ 375 (533)
.|++++|...|++..+... -+..++..+...+...|+ ++|.+.++......|........++..+...|+. ++|.+.
T Consensus 250 ~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~ 327 (388)
T d1w3ba_ 250 QGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNI-EEAVRL 327 (388)
T ss_dssp TTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCH-HHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCH-HHHHHH
Confidence 9999999999999887532 245678888899999999 9999999999999998888888889999999987 999999
Q ss_pred Hhhhcc-Cc-cchhhHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 009506 376 FNSISK-DV-KKAYCNCLIDLCVNLNLLENACKLLELGLTL 414 (533)
Q Consensus 376 ~~~~~~-~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 414 (533)
|++... .| +..+|..+..+|.+.|++++|+..|++..+.
T Consensus 328 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 368 (388)
T d1w3ba_ 328 YRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 988643 33 4557889999999999999999999988764
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=1.3e-14 Score=140.96 Aligned_cols=301 Identities=12% Similarity=0.074 Sum_probs=238.4
Q ss_pred HHhhHHHHHhhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----------------
Q 009506 91 KEKSYDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG---------------- 154 (533)
Q Consensus 91 ~~~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~---------------- 154 (533)
.+...+....+.. +-++.+|..+...|.+.|++++|+..+....+... .+...+........
T Consensus 51 ~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (388)
T d1w3ba_ 51 RSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSAL 128 (388)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcccccccccccccccccc-cccccccccccccccccccccccccccccc
Confidence 4556666665543 33678899999999999999999999999987532 23333333322222
Q ss_pred ------------------hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHH
Q 009506 155 ------------------RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLY 216 (533)
Q Consensus 155 ------------------~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 216 (533)
..+....+...+....... +-+...+..+...+...|++++|...+++..+.... +...|
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~ 206 (388)
T d1w3ba_ 129 QYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAY 206 (388)
T ss_dssp HHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred ccccccccccccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcc-cHHHH
Confidence 2333334444444444332 345677888889999999999999999999887544 67889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 009506 217 NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 296 (533)
Q Consensus 217 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 296 (533)
..+...+...|++++|.+.+++..... ..+...+..+...|.+.|++++|...|++..+.. +-+..++..+...|..
T Consensus 207 ~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 283 (388)
T d1w3ba_ 207 INLGNVLKEARIFDRAVAAYLRALSLS--PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKE 283 (388)
T ss_dssp HHHHHHHHTTTCTTHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHH
T ss_pred HHHhhhhhccccHHHHHHHHHHhHHHh--hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 999999999999999999999988865 5678889999999999999999999999988753 3357889999999999
Q ss_pred cCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHH
Q 009506 297 AQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATEL 375 (533)
Q Consensus 297 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~ 375 (533)
.|++++|.+.++...... ..+...+..+...+...|+ ++|.+.++...+..|+.......++..+...|+. ++|...
T Consensus 284 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-~~A~~~ 361 (388)
T d1w3ba_ 284 KGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKL-QEALMH 361 (388)
T ss_dssp HSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCC-HHHHHH
T ss_pred cCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-HHHHHH
Confidence 999999999999987653 4466788889999999999 9999999999999999888888899999999998 999999
Q ss_pred Hhhhcc-Cc-cchhhHHHHHHHHhcCC
Q 009506 376 FNSISK-DV-KKAYCNCLIDLCVNLNL 400 (533)
Q Consensus 376 ~~~~~~-~~-~~~~~~~li~~~~~~g~ 400 (533)
|++... .| +...|..|..+|.+.|+
T Consensus 362 ~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 362 YKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 987643 44 45588899999988875
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=1.3e-11 Score=117.08 Aligned_cols=232 Identities=12% Similarity=0.051 Sum_probs=165.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 009506 114 LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY 193 (533)
Q Consensus 114 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 193 (533)
....+.+.|++++|+..|+++.+.. +-+..+|..+..++...|++++|+..|++..+.. +-+...+..+...|...|+
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccccc
Confidence 4556789999999999999998853 2357889999999999999999999999998754 3467888899999999999
Q ss_pred hHHHHHHHHHHHHcCCCc--------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 009506 194 GEDTLSVYREMKEKGMQL--------------SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 259 (533)
Q Consensus 194 ~~~a~~~~~~m~~~g~~~--------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~ 259 (533)
+++|.+.+++........ +.......+..+...+...+|.+.|++..+...-..+...+..+...+
T Consensus 103 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~ 182 (323)
T d1fcha_ 103 QRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLF 182 (323)
T ss_dssp HHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHH
T ss_pred ccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHH
Confidence 999999999987653210 001111122334445566777777776655332134566777777888
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCC-CHHHHHHHHHHHhcCCh-HHH
Q 009506 260 SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP-DDRFCGCLLNVMTQTPK-EEL 337 (533)
Q Consensus 260 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~-~~a 337 (533)
...|++++|...|++..... +-+...|..+..+|.+.|++++|.+.|++..+.. | +...+..+..+|.+.|+ ++|
T Consensus 183 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A 259 (323)
T d1fcha_ 183 NLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ--PGYIRSRYNLGISCINLGAHREA 259 (323)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHh--hccHHHHHHHHHHHHHCCCHHHH
Confidence 88888888888888876643 2346677777788888888888888888776642 3 34466667777777777 777
Q ss_pred HHHHHHHHhcCCC
Q 009506 338 GKLVECVEKSNSK 350 (533)
Q Consensus 338 ~~~~~~~~~~~~~ 350 (533)
...++...+..|+
T Consensus 260 ~~~~~~al~l~p~ 272 (323)
T d1fcha_ 260 VEHFLEALNMQRK 272 (323)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCc
Confidence 7776666554443
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=1.1e-10 Score=110.37 Aligned_cols=224 Identities=12% Similarity=-0.019 Sum_probs=170.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC
Q 009506 149 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 228 (533)
Q Consensus 149 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 228 (533)
....+.+.|++++|+..|+++++.. +-+..+|..+..+|...|++++|...|.+..+.... +...|..+...|...|+
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc-ccccccccccccccccc
Confidence 4556789999999999999999864 346789999999999999999999999999887554 67888999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCCHH----------------HHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHH
Q 009506 229 TDEAFEIFEDMKSSENCQPDSW----------------TFSSMITICSCRGKVSEAEAMFNEMLEAG-FEPNLFVLTSLI 291 (533)
Q Consensus 229 ~~~A~~~~~~m~~~~~~~p~~~----------------~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li 291 (533)
+++|.+.+++..... |+.. .....+..+...+.+.+|.+.|.+..+.. -..+...+..+.
T Consensus 103 ~~~A~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~ 179 (323)
T d1fcha_ 103 QRQACEILRDWLRYT---PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLG 179 (323)
T ss_dssp HHHHHHHHHHHHHTS---TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHH
T ss_pred ccccccchhhHHHhc---cchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhH
Confidence 999999999887643 2211 11122233445566777888887766532 234567777888
Q ss_pred HHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHH
Q 009506 292 QCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKK 370 (533)
Q Consensus 292 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 370 (533)
..+...|++++|...|++..+... -+...+..+...+...|+ ++|.+.++.+.+.+|+.......++..|...|+. +
T Consensus 180 ~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~-~ 257 (323)
T d1fcha_ 180 VLFNLSGEYDKAVDCFTAALSVRP-NDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAH-R 257 (323)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH-H
T ss_pred HHHHHHHHHhhhhccccccccccc-ccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCH-H
Confidence 888888888888888888776532 245577777888888888 8888888888888887777777778888888876 7
Q ss_pred HHHHHHhhh
Q 009506 371 EATELFNSI 379 (533)
Q Consensus 371 ~a~~~~~~~ 379 (533)
+|+..|++.
T Consensus 258 ~A~~~~~~a 266 (323)
T d1fcha_ 258 EAVEHFLEA 266 (323)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 787777764
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.07 E-value=3.3e-08 Score=92.72 Aligned_cols=214 Identities=7% Similarity=0.067 Sum_probs=162.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009506 108 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP-NMITYNNLLDTMGRAK-RPWQVKTIYKEMTDNGLSPNWNTYASLL 185 (533)
Q Consensus 108 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~ll 185 (533)
...|+.+-..+.+.+.+++|+++++++.+. .| +...|+....++...| ++++|+..++...+.. +-+..+|+.+.
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~l--nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~ 119 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 119 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHh
Confidence 667788888889999999999999999985 34 5667888888888876 5899999999998754 45678999999
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC-
Q 009506 186 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK- 264 (533)
Q Consensus 186 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~- 264 (533)
..+.+.|++++|++.++++.+.... +...|..+...+.+.|++++|++.|+.+.+.. +.+...|+.+...+.+.+.
T Consensus 120 ~~~~~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~--p~n~~a~~~r~~~l~~~~~~ 196 (315)
T d2h6fa1 120 VLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED--VRNNSVWNQRYFVISNTTGY 196 (315)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCS
T ss_pred HHHHhhccHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC--CccHHHHHHHHHHHHHcccc
Confidence 9999999999999999999987655 78899999999999999999999999998865 4578888887777776665
Q ss_pred -----hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCC-CHHHHHHHHHHH
Q 009506 265 -----VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP-DDRFCGCLLNVM 329 (533)
Q Consensus 265 -----~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~ 329 (533)
+++|.+.+....+.. +-+...|+.+...+.. ...+++.+.++...+....+ +...+..+...+
T Consensus 197 ~~~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y 265 (315)
T d2h6fa1 197 NDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIY 265 (315)
T ss_dssp CSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred chhhhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHH
Confidence 567877777776643 2356666666555443 34566777777665543322 233444444443
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.05 E-value=3.9e-08 Score=92.00 Aligned_cols=186 Identities=16% Similarity=0.130 Sum_probs=97.4
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 009506 124 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 203 (533)
Q Consensus 124 ~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 203 (533)
.++|..+|++..+...+.+...|...+....+.|+++.|..+|+++++........+|...+..+.+.|+++.|.++|+.
T Consensus 80 ~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~ 159 (308)
T d2onda1 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 35556666665544333344555555555666666666666666665433222234555666666666666666666666
Q ss_pred HHHcCCCcCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CC
Q 009506 204 MKEKGMQLSVTLYNTLLA-MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG-FE 281 (533)
Q Consensus 204 m~~~g~~~~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~ 281 (533)
+.+.+.. +...|..... -+...|+.+.|..+|+.+.... +.+...|...+..+.+.|+++.|..+|++..... ..
T Consensus 160 al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~--p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~ 236 (308)
T d2onda1 160 AREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 5554332 2222222222 2233455666666666555542 3445556666666666666666666666654432 22
Q ss_pred CC--HHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 009506 282 PN--LFVLTSLIQCYGKAQRTDDVVRALNRLPE 312 (533)
Q Consensus 282 p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 312 (533)
|+ ...|...+.--...|+.+.+..+++++.+
T Consensus 237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 21 33455555555555666666666555543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.00 E-value=8e-08 Score=89.77 Aligned_cols=219 Identities=11% Similarity=0.098 Sum_probs=158.4
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--------------hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 009506 125 DGCLNVYEEMKAIGVKPNMITYNNLLDTMG--------------RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 190 (533)
Q Consensus 125 ~~A~~~~~~m~~~g~~pd~~~~~~li~~~~--------------~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 190 (533)
+.+..+|+++... ++-+...|-.-+.-+- ..+..++|..+|++.++...+-+...|...+..+.+
T Consensus 33 ~Rv~~vyerAl~~-~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~ 111 (308)
T d2onda1 33 KRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 4466677776553 2234555544443332 223457788999998876555667788888999999
Q ss_pred cCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH-HHhcCChHHHH
Q 009506 191 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI-CSCRGKVSEAE 269 (533)
Q Consensus 191 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~-~~~~g~~~~A~ 269 (533)
.|+++.|..+|+++.+........+|...+..+.+.|+.+.|.++|+++.+.+ +.+...|...... +...|+.+.|.
T Consensus 112 ~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~--~~~~~~~~~~a~~e~~~~~~~~~a~ 189 (308)
T d2onda1 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST--TCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred cccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhccCHHHHH
Confidence 99999999999999876554446689999999999999999999999988765 3344444444333 44568999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCC-CCCC--HHHHHHHHHHHhcCCh-HHHHHHHHHHH
Q 009506 270 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG-ITPD--DRFCGCLLNVMTQTPK-EELGKLVECVE 345 (533)
Q Consensus 270 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~--~~~~~~ll~~~~~~~~-~~a~~~~~~~~ 345 (533)
++|+.+.+. .+.+...|...++.+.+.|+.+.|..+|++..+.. ..|+ ...|...+..-...|+ +.+.++.+.+.
T Consensus 190 ~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~ 268 (308)
T d2onda1 190 KIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999998875 34467889999999999999999999999987653 3443 3467777776666677 66666666554
Q ss_pred hc
Q 009506 346 KS 347 (533)
Q Consensus 346 ~~ 347 (533)
+.
T Consensus 269 ~~ 270 (308)
T d2onda1 269 TA 270 (308)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.97 E-value=4.6e-07 Score=85.27 Aligned_cols=274 Identities=9% Similarity=-0.043 Sum_probs=180.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCC----HH
Q 009506 111 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN------MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL-SPN----WN 179 (533)
Q Consensus 111 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~ 179 (533)
.......+...|++++|+++|++..+.. |+ ...++.+..++...|++++|+..|++..+..- .++ ..
T Consensus 15 ~~lrA~~~~~~g~~~~A~~~~~~aL~~~--~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 92 (366)
T d1hz4a_ 15 NALRAQVAINDGNPDEAERLAKLALEEL--PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 92 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTC--CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHH
Confidence 3344566788999999999999988742 33 34677788889999999999999998864210 112 24
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHc----CCC--c-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CCCCH
Q 009506 180 TYASLLRAYGRARYGEDTLSVYREMKEK----GMQ--L-SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN---CQPDS 249 (533)
Q Consensus 180 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~~p~~ 249 (533)
.+..+...+...|++..+...+.+.... +.. + ....+..+...+...|+++.+...++....... .....
T Consensus 93 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 172 (366)
T d1hz4a_ 93 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL 172 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHH
Confidence 5666777888999999999888876542 111 1 123555667788899999999999877665321 12235
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCC---HH
Q 009506 250 WTFSSMITICSCRGKVSEAEAMFNEMLEA--GFEPN----LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD---DR 320 (533)
Q Consensus 250 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~ 320 (533)
..+..+...+...+++..+...+.+.... ..... ...+..+...+...|+.++|...+.+..+.....+ ..
T Consensus 173 ~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 252 (366)
T d1hz4a_ 173 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG 252 (366)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHH
Confidence 56667777888889999998888776541 11111 23455666677888999999999888765432222 22
Q ss_pred HHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhccCc-cchhhHHHHHHHHhc
Q 009506 321 FCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDV-KKAYCNCLIDLCVNL 398 (533)
Q Consensus 321 ~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~~~~-~~~~~~~li~~~~~~ 398 (533)
.+..+..++...|+ ++|...++.+. ...+.....+ ....+..+...|.+.
T Consensus 253 ~~~~la~~~~~~g~~~~A~~~~~~al----------------------------~~~~~~~~~~~~~~~~~~la~~~~~~ 304 (366)
T d1hz4a_ 253 QWRNIARAQILLGEFEPAEIVLEELN----------------------------ENARSLRLMSDLNRNLLLLNQLYWQA 304 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH----------------------------HHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH----------------------------HHHhhcccChHHHHHHHHHHHHHHHC
Confidence 34445555555555 55555444322 1112212111 233677788888899
Q ss_pred CCHHHHHHHHHHHHhc
Q 009506 399 NLLENACKLLELGLTL 414 (533)
Q Consensus 399 g~~~~A~~l~~~m~~~ 414 (533)
|++++|.+.+++..+.
T Consensus 305 g~~~~A~~~l~~Al~l 320 (366)
T d1hz4a_ 305 GRKSDAQRVLLDALKL 320 (366)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999988877553
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.94 E-value=8.4e-08 Score=89.87 Aligned_cols=244 Identities=9% Similarity=0.100 Sum_probs=169.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 009506 145 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR-YGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 223 (533)
Q Consensus 145 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 223 (533)
.|+.+-..+.+.+..++|+++++++++.. +-+...|+....++...| ++++|+..++...+.... +..+|+.+...+
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~~~ 122 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVLV 122 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHhHHH
Confidence 34555555677888899999999998864 445667888888888776 489999999988887655 788888888889
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----
Q 009506 224 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR---- 299 (533)
Q Consensus 224 ~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~---- 299 (533)
.+.|++++|++.++.+.+.. +.+...|..+...+.+.|++++|.+.|+++.+.. +-+...|+.+...+.+.+.
T Consensus 123 ~~l~~~~eAl~~~~kal~~d--p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~~ 199 (315)
T d2h6fa1 123 EWLRDPSQELEFIADILNQD--AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR 199 (315)
T ss_dssp HHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HhhccHHHHHHHHhhhhhhh--hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccchh
Confidence 99999999999998888765 5678889999999999999999999999988854 2356677776666665554
Q ss_pred --hhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCChh--HHHHHHHHhhhhh--------cc
Q 009506 300 --TDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLG--YVVKLLLEEQDIE--------GD 367 (533)
Q Consensus 300 --~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~l~~~~~~~--------g~ 367 (533)
+++|+..+.+..+... -+...|..+...+...+..++.+.++...+..++.. .....+...|... ..
T Consensus 200 ~~~~~ai~~~~~al~~~P-~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~ 278 (315)
T d2h6fa1 200 AVLEREVQYTLEMIKLVP-HNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKED 278 (315)
T ss_dssp HHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred hhhHHhHHHHHHHHHhCC-CchHHHHHHHHHHHhcChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 5678888888776542 255566666666666666667777777766655543 2224444443321 11
Q ss_pred HHHHHHHHHhhhccCccc---hhhHHHHHH
Q 009506 368 FKKEATELFNSISKDVKK---AYCNCLIDL 394 (533)
Q Consensus 368 ~~~~a~~~~~~~~~~~~~---~~~~~li~~ 394 (533)
..++|.+++..+....|. ..|+-+...
T Consensus 279 ~~~ka~~l~~~l~~~~DpiR~~yw~~~~~~ 308 (315)
T d2h6fa1 279 ILNKALELCEILAKEKDTIRKEYWRYIGRS 308 (315)
T ss_dssp HHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 235666666654433332 245544443
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.82 E-value=2.6e-07 Score=83.45 Aligned_cols=198 Identities=9% Similarity=-0.060 Sum_probs=136.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009506 108 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 187 (533)
Q Consensus 108 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 187 (533)
..+|..+...|.+.|++++|++.|++..+.. +-+..+|+.+..++.+.|++++|++.|++..+.. +-+..++..+..+
T Consensus 37 a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~ 114 (259)
T d1xnfa_ 37 AQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIA 114 (259)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHH
Confidence 4577788899999999999999999998753 3467889999999999999999999999999854 3356788889999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC---
Q 009506 188 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK--- 264 (533)
Q Consensus 188 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~--- 264 (533)
|...|++++|...|+...+.... +......+...+.+.+..+.+..+........ ++...++ ++..+.....
T Consensus 115 ~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~ 189 (259)
T d1xnfa_ 115 LYYGGRDKLAQDDLLAFYQDDPN-DPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD---KEQWGWN-IVEFYLGNISEQT 189 (259)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC---CCSTHHH-HHHHHTTSSCHHH
T ss_pred HHHHhhHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHhhhHHHHHHHHHHhhccc---hhhhhhh-HHHHHHHHHHHHH
Confidence 99999999999999999887543 45554445555566666666666666655533 2222222 2222222211
Q ss_pred -hHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHhhhCC
Q 009506 265 -VSEAEAMFNEMLEAGFEPN-LFVLTSLIQCYGKAQRTDDVVRALNRLPELG 314 (533)
Q Consensus 265 -~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 314 (533)
.+.+...+..... ..|+ ..+|..+...|...|++++|...|++.....
T Consensus 190 ~~~~~~~~~~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 239 (259)
T d1xnfa_ 190 LMERLKADATDNTS--LAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 239 (259)
T ss_dssp HHHHHHHHCCSHHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhhh--cCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 2222222111111 0122 3456677888889999999999999987654
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.73 E-value=3.5e-07 Score=82.54 Aligned_cols=95 Identities=11% Similarity=0.042 Sum_probs=50.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 009506 180 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 259 (533)
Q Consensus 180 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~ 259 (533)
+|..+..+|.+.|++++|+..|++..+.... +..+|+.+..+|.+.|++++|++.|++..+.. +-+..++..+..+|
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~ 115 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD--PTYNYAHLNRGIAL 115 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccCCC-CHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH--hhhhhhHHHHHHHH
Confidence 3444445555555555555555555554332 45555555555555555555555555555432 22344555555555
Q ss_pred HhcCChHHHHHHHHHHHH
Q 009506 260 SCRGKVSEAEAMFNEMLE 277 (533)
Q Consensus 260 ~~~g~~~~A~~~~~~m~~ 277 (533)
...|++++|.+.|+...+
T Consensus 116 ~~~g~~~~A~~~~~~al~ 133 (259)
T d1xnfa_ 116 YYGGRDKLAQDDLLAFYQ 133 (259)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHh
Confidence 555555555555555544
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.71 E-value=1.3e-07 Score=89.43 Aligned_cols=273 Identities=11% Similarity=0.009 Sum_probs=175.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHH---H-------HhcCChhHHHHHHHHHHHCCCCCCHH
Q 009506 111 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM-ITYNNLLDT---M-------GRAKRPWQVKTIYKEMTDNGLSPNWN 179 (533)
Q Consensus 111 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~~~~~li~~---~-------~~~g~~~~a~~~~~~m~~~g~~p~~~ 179 (533)
+..++....+.+..++|++++++..+. .||. ..|+..-.. + ...|.+++|+.+++...+.. +-+..
T Consensus 32 ~~~~~~~~~~~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~ 108 (334)
T d1dcea1 32 TQAVFQKRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYG 108 (334)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHH
Confidence 344444444445568999999999874 4654 345443322 2 23345778888999888753 44667
Q ss_pred HHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCcCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHH
Q 009506 180 TYASLLRAYGRARY--GEDTLSVYREMKEKGMQLSVTLYN-TLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 256 (533)
Q Consensus 180 ~~~~ll~~~~~~g~--~~~a~~~~~~m~~~g~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li 256 (533)
.|..+..++...+. +++|...++++.+.... +...+. .+...+...+..++|+..++...+.. +-+...|+.+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~--p~~~~a~~~l~ 185 (334)
T d1dcea1 109 TWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--FSNYSSWHYRS 185 (334)
T ss_dssp HHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT--CCCHHHHHHHH
T ss_pred HHHHhhHHHHHhccccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC--CCCHHHHHHHH
Confidence 77777777776654 78899999998887544 455554 44467777899999999999888765 46788899999
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-H
Q 009506 257 TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-E 335 (533)
Q Consensus 257 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~ 335 (533)
..+.+.|++++|...+....+. .|+ ...+...+...+..+++...+........ ++...+..+...+...++ .
T Consensus 186 ~~~~~~~~~~~A~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~-~~~~~~~~l~~~~~~~~~~~ 259 (334)
T d1dcea1 186 CLLPQLHPQPDSGPQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRA-EPLFRCELSVEKSTVLQSEL 259 (334)
T ss_dssp HHHHHHSCCCCSSSCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCC-CCSSSCCCCHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCc-chhhHHHHHHHHHHHHhhHH
Confidence 9999999988877666544331 111 12233344556777777777777655432 122233344444555555 6
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhcc-Ccc-chhhHHHHHHHH
Q 009506 336 ELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK-DVK-KAYCNCLIDLCV 396 (533)
Q Consensus 336 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~~-~~~-~~~~~~li~~~~ 396 (533)
++...+....+.+|........++..+...|+. ++|.+.|++... +|+ ...|+.|...+.
T Consensus 260 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~-~eA~~~~~~ai~ldP~~~~y~~~L~~~~~ 321 (334)
T d1dcea1 260 ESCKELQELEPENKWCLLTIILLMRALDPLLYE-KETLQYFSTLKAVDPMRAAYLDDLRSKFL 321 (334)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGH-HHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHCcccHHHHHHHHHHHh
Confidence 677777777667766666667777777777766 777777776543 332 335555544443
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.59 E-value=4.4e-06 Score=78.23 Aligned_cols=271 Identities=15% Similarity=0.058 Sum_probs=144.5
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcC----CCc-CHHHHHHHHH
Q 009506 151 DTMGRAKRPWQVKTIYKEMTDNGLSPN----WNTYASLLRAYGRARYGEDTLSVYREMKEKG----MQL-SVTLYNTLLA 221 (533)
Q Consensus 151 ~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g----~~~-~~~~~~~li~ 221 (533)
..+...|++++|++++++.++..-..+ ..++..+...|...|++++|...|++..+.. ..+ ....+..+..
T Consensus 20 ~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 99 (366)
T d1hz4a_ 20 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 99 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 445677777777777777766421111 2355666667777777777777777665421 111 1234455556
Q ss_pred HHHhcCCHHHHHHHHHHHHh----CCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCCHHHHHHHH
Q 009506 222 MCADVGYTDEAFEIFEDMKS----SEN-CQP-DSWTFSSMITICSCRGKVSEAEAMFNEMLEA----GFEPNLFVLTSLI 291 (533)
Q Consensus 222 ~~~~~g~~~~A~~~~~~m~~----~~~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~~~~~li 291 (533)
.+...|++..+...+.+... .+. ..+ ....+..+...+...|+++.+...+...... +.......+..+.
T Consensus 100 ~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (366)
T d1hz4a_ 100 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 179 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence 66677777777777665432 111 011 1223445556666667777777766665542 1122234444455
Q ss_pred HHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCChh---HHHHHHHHhhhhhccH
Q 009506 292 QCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLG---YVVKLLLEEQDIEGDF 368 (533)
Q Consensus 292 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~ 368 (533)
..+...++.+.+...+.+..... ...+.... .....++..+...|+.
T Consensus 180 ~~~~~~~~~~~a~~~~~~a~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (366)
T d1hz4a_ 180 QCSLARGDLDNARSQLNRLENLL------------------------------GNGKYHSDWISNANKVRVIYWQMTGDK 229 (366)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHH------------------------------TTSCCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHH------------------------------HHhcccCchHHHHHHHHHHHHHhcccH
Confidence 55556666666665555443210 00111111 1113334445555655
Q ss_pred HHHHHHHHhhhccC-c-----cchhhHHHHHHHHhcCCHHHHHHHHHHHHhccccCCccccCccceeecccccC-hhhHH
Q 009506 369 KKEATELFNSISKD-V-----KKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLS-LGAAL 441 (533)
Q Consensus 369 ~~~a~~~~~~~~~~-~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~~~~~~l~~~~-~g~~~ 441 (533)
++|...++..... + ....+..+..+|...|++++|...+++.....-..+........|..+-..+. .|...
T Consensus 230 -~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 308 (366)
T d1hz4a_ 230 -AAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKS 308 (366)
T ss_dssp -HHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred -HHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHH
Confidence 7777777765421 1 12255668889999999999999999886432211211111222322222232 37778
Q ss_pred HHHHHHHHHHH
Q 009506 442 TALHIWINDLS 452 (533)
Q Consensus 442 ~a~~~~~~~l~ 452 (533)
+|+..+.+.++
T Consensus 309 ~A~~~l~~Al~ 319 (366)
T d1hz4a_ 309 DAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88877655444
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.58 E-value=4.5e-07 Score=85.50 Aligned_cols=257 Identities=7% Similarity=-0.022 Sum_probs=175.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-HHHHHHH---HHH-------HhcCChHHHHHHHHHHHHcCCCcCHHH
Q 009506 147 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW-NTYASLL---RAY-------GRARYGEDTLSVYREMKEKGMQLSVTL 215 (533)
Q Consensus 147 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~ll---~~~-------~~~g~~~~a~~~~~~m~~~g~~~~~~~ 215 (533)
..++......+..++|++++++.++.. |+. ..|+..- ..+ ...|.+++|+.+++...+...+ +...
T Consensus 33 ~~~~~~~~~~~~~~~al~~~~~~l~~~--P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk-~~~~ 109 (334)
T d1dcea1 33 QAVFQKRQAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGT 109 (334)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHH
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCC-cHHH
Confidence 333333334445589999999998753 554 3444332 222 2344578899999998887654 7778
Q ss_pred HHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCCHHHHHH-HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 009506 216 YNTLLAMCADVG--YTDEAFEIFEDMKSSENCQPDSWTFSS-MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 292 (533)
Q Consensus 216 ~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~~p~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 292 (533)
|..+..++...+ ++++|...++.+.+.. +++...+.. +...+...+.+++|...++.+.+.. +-+...|+.+..
T Consensus 110 ~~~~~~~~~~~~~~~~~~a~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~ 186 (334)
T d1dcea1 110 WHHRCWLLSRLPEPNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSC 186 (334)
T ss_dssp HHHHHHHHHTCSSCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHH
T ss_pred HHHhhHHHHHhccccHHHHHHHHHHHHhhC--chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHH
Confidence 888877777665 5899999999988764 456666654 4567778899999999999887754 246788999999
Q ss_pred HHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHH
Q 009506 293 CYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKE 371 (533)
Q Consensus 293 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 371 (533)
.+.+.|++++|...+....+. .|+ ... +...+...+. .++...+.......+........++..+...|+. ++
T Consensus 187 ~~~~~~~~~~A~~~~~~~~~~--~~~--~~~-~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~-~~ 260 (334)
T d1dcea1 187 LLPQLHPQPDSGPQGRLPENV--LLK--ELE-LVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSE-LE 260 (334)
T ss_dssp HHHHHSCCCCSSSCCSSCHHH--HHH--HHH-HHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHH-HH
T ss_pred HHHHhcCHHHHHHHHHHhHHh--HHH--HHH-HHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhH-HH
Confidence 999999998887666554432 111 112 2222333344 6666666666666666554444445555555655 77
Q ss_pred HHHHHhhhcc-Cc-cchhhHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 009506 372 ATELFNSISK-DV-KKAYCNCLIDLCVNLNLLENACKLLELGLTLE 415 (533)
Q Consensus 372 a~~~~~~~~~-~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 415 (533)
|...|.+... .| +...|..+...|.+.|+.++|++.+++..+..
T Consensus 261 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ld 306 (334)
T d1dcea1 261 SCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 306 (334)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 7777776554 33 45588889999999999999999999987753
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.42 E-value=7.5e-06 Score=75.18 Aligned_cols=202 Identities=11% Similarity=0.022 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHH----CCC-CCCHH
Q 009506 110 AFSTLIKLYGTAGNFDGCLNVYEEMKAI----GVKP-NMITYNNLLDTMGRAKRPWQVKTIYKEMTD----NGL-SPNWN 179 (533)
Q Consensus 110 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-d~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~-~p~~~ 179 (533)
.|......|...|++++|.+.|++..+. +-.+ -..+|+.+..+|.+.|++++|++.+++..+ .|- .....
T Consensus 39 ~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 118 (290)
T d1qqea_ 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN 118 (290)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHH
Confidence 4666677777777777777777776542 1111 124566666677777777777777665543 110 00123
Q ss_pred HHHHHHHHHH-hcCChHHHHHHHHHHHHc----CCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----C-
Q 009506 180 TYASLLRAYG-RARYGEDTLSVYREMKEK----GMQL-SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP----D- 248 (533)
Q Consensus 180 ~~~~ll~~~~-~~g~~~~a~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p----~- 248 (533)
++..+...|- ..|++++|++.|++..+. +..+ -..+|..+...|...|++++|++.|++......-.+ .
T Consensus 119 ~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~ 198 (290)
T d1qqea_ 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198 (290)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhH
Confidence 3444444443 346666666666655431 1111 123455556666666666666666666554321000 0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC---HHHHHHHHHHHHh--cCChhHHHHHHHHhh
Q 009506 249 SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE-PN---LFVLTSLIQCYGK--AQRTDDVVRALNRLP 311 (533)
Q Consensus 249 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~---~~~~~~li~~~~~--~g~~~~a~~~~~~m~ 311 (533)
...+..++..+...|+++.|.+.+++..+.... ++ ......++.++.. .+.+++|+..|+.+.
T Consensus 199 ~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~ 267 (290)
T d1qqea_ 199 KDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (290)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 011223333445556666666666655432100 11 1233444444443 233555555554443
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.30 E-value=2e-05 Score=67.25 Aligned_cols=123 Identities=12% Similarity=0.014 Sum_probs=82.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 009506 115 IKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 194 (533)
Q Consensus 115 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 194 (533)
...+...|++++|++.|+++ ..|+..+|..+..+|...|++++|++.|++.++.. +-+...|..+..+|.+.|++
T Consensus 12 g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~ 86 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 86 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccH
Confidence 44556778888888888764 24677777778888888888888888888877654 34567777777788888888
Q ss_pred HHHHHHHHHHHHcCC--------------CcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 009506 195 EDTLSVYREMKEKGM--------------QLS-VTLYNTLLAMCADVGYTDEAFEIFEDMKSS 242 (533)
Q Consensus 195 ~~a~~~~~~m~~~g~--------------~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 242 (533)
++|.+.|++...... .++ ..++..+..++.+.|++++|.+.|+.....
T Consensus 87 ~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~ 149 (192)
T d1hh8a_ 87 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149 (192)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 888877777654210 011 234445555666666777776666665553
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.29 E-value=3.4e-05 Score=65.75 Aligned_cols=125 Identities=6% Similarity=-0.047 Sum_probs=95.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCH
Q 009506 150 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 229 (533)
Q Consensus 150 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 229 (533)
...+...|+++.|++.|+++ .+|+..+|..+..+|.+.|++++|++.|++.++.... +...|..+..+|.+.|++
T Consensus 12 g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-~~~a~~~~g~~~~~~g~~ 86 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTEKY 86 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh-hhhhHHHHHHHHHhhccH
Confidence 34457789999999988764 3578888888999999999999999999999887655 688888899999999999
Q ss_pred HHHHHHHHHHHhCCC-------------CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 009506 230 DEAFEIFEDMKSSEN-------------CQP-DSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 279 (533)
Q Consensus 230 ~~A~~~~~~m~~~~~-------------~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 279 (533)
++|++.|++...... ... ...++..+..+|.+.|++++|.+.|.......
T Consensus 87 ~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 87 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 999999988754210 000 12445566777888888888888887766543
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.28 E-value=1.9e-05 Score=72.42 Aligned_cols=193 Identities=12% Similarity=0.147 Sum_probs=126.4
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCChHHH
Q 009506 123 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN----GLSPN-WNTYASLLRAYGRARYGEDT 197 (533)
Q Consensus 123 ~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a 197 (533)
++++|.++|.+. ...|...|++++|.+.|++..+. +-.++ ..+|..+..+|.+.|++++|
T Consensus 32 ~~~~Aa~~y~~a---------------a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A 96 (290)
T d1qqea_ 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (290)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHH
Confidence 456666665544 55678889999999999888642 21111 35788889999999999999
Q ss_pred HHHHHHHHHc----CC-CcCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHh----CCCCCC-CHHHHHHHHHHHHhcCChH
Q 009506 198 LSVYREMKEK----GM-QLSVTLYNTLLAMCAD-VGYTDEAFEIFEDMKS----SENCQP-DSWTFSSMITICSCRGKVS 266 (533)
Q Consensus 198 ~~~~~~m~~~----g~-~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~----~~~~~p-~~~~~~~li~~~~~~g~~~ 266 (533)
.+.+++..+. |. .....++..+...|.. .|++++|++.+++..+ .+. .+ -..+|..+...|...|+++
T Consensus 97 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~-~~~~~~~~~~la~~~~~~g~y~ 175 (290)
T d1qqea_ 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS-VALSNKCFIKCADLKALDGQYI 175 (290)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCc-hhhhhhHHHHHHHHHHHcChHH
Confidence 9998876542 11 1124556666666644 6999999999987643 221 11 2456778889999999999
Q ss_pred HHHHHHHHHHHcCCC-----CCH-HHHHHHHHHHHhcCChhHHHHHHHHhhhCCCC-CC---HHHHHHHHHHHhc
Q 009506 267 EAEAMFNEMLEAGFE-----PNL-FVLTSLIQCYGKAQRTDDVVRALNRLPELGIT-PD---DRFCGCLLNVMTQ 331 (533)
Q Consensus 267 ~A~~~~~~m~~~g~~-----p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~---~~~~~~ll~~~~~ 331 (533)
+|..+|++....... ... ..+..++..+...|+.+.|...+++..+.... ++ ......++.++..
T Consensus 176 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~ 250 (290)
T d1qqea_ 176 EASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNE 250 (290)
T ss_dssp HHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHh
Confidence 999999987764211 111 22344555667789999999999988765321 11 1234455555544
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.15 E-value=3.5e-05 Score=59.73 Aligned_cols=23 Identities=22% Similarity=0.229 Sum_probs=8.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 009506 216 YNTLLAMCADVGYTDEAFEIFED 238 (533)
Q Consensus 216 ~~~li~~~~~~g~~~~A~~~~~~ 238 (533)
|..+..++...|++++|+..|+.
T Consensus 74 ~~~~g~~~~~~~~~~~A~~~~~~ 96 (117)
T d1elwa_ 74 YSRKAAALEFLNRFEEAKRTYEE 96 (117)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHH
Confidence 33333333333333333333333
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.10 E-value=3.2e-05 Score=59.94 Aligned_cols=88 Identities=18% Similarity=0.103 Sum_probs=41.3
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChH
Q 009506 187 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 266 (533)
Q Consensus 187 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 266 (533)
.+.+.|++++|+.+|.+..+.... +...|..+..+|.+.|++++|++.++...+.+ +.+...|..+..++...|+++
T Consensus 12 ~~~~~g~~~eAi~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 12 KALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK--PDWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCc-chhhhhcccccccccccccccchhhhhHHHhc--cchhhHHHHHHHHHHHccCHH
Confidence 344444555555555444444322 34444444444444555555555554444433 334444444444555555555
Q ss_pred HHHHHHHHHHH
Q 009506 267 EAEAMFNEMLE 277 (533)
Q Consensus 267 ~A~~~~~~m~~ 277 (533)
+|...|++..+
T Consensus 89 ~A~~~~~~a~~ 99 (117)
T d1elwa_ 89 EAKRTYEEGLK 99 (117)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 55555544443
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.09 E-value=4.8e-05 Score=62.55 Aligned_cols=87 Identities=17% Similarity=0.064 Sum_probs=39.1
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHH
Q 009506 153 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 232 (533)
Q Consensus 153 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 232 (533)
|.+.|++++|+..|++.++.. +-+...|..+..+|...|++++|.+.|++..+.... +..+|..+..+|...|++++|
T Consensus 20 ~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~~~~~g~~~eA 97 (159)
T d1a17a_ 20 YFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFRAA 97 (159)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHccc-chHHHHHHHHHHHHcCCHHHH
Confidence 344444444444444444432 223344444444444444444444444444443322 334444444444444444444
Q ss_pred HHHHHHHHh
Q 009506 233 FEIFEDMKS 241 (533)
Q Consensus 233 ~~~~~~m~~ 241 (533)
.+.|++...
T Consensus 98 ~~~~~~a~~ 106 (159)
T d1a17a_ 98 LRDYETVVK 106 (159)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.09 E-value=3.3e-05 Score=66.05 Aligned_cols=98 Identities=8% Similarity=-0.059 Sum_probs=54.5
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHH
Q 009506 176 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 255 (533)
Q Consensus 176 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~l 255 (533)
|+...+-.....|.+.|++++|+..|.+..+.... +...|+.+..+|.+.|++++|+..|+...+.. +-+..+|..+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~-~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~--p~~~~a~~~l 78 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHFFL 78 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC--TTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC--CCcHHHHHHH
Confidence 44444444555555566666666666555554332 45555555566666666666666666555432 2245555556
Q ss_pred HHHHHhcCChHHHHHHHHHHH
Q 009506 256 ITICSCRGKVSEAEAMFNEML 276 (533)
Q Consensus 256 i~~~~~~g~~~~A~~~~~~m~ 276 (533)
..+|.+.|++++|...|++..
T Consensus 79 g~~~~~l~~~~~A~~~~~~al 99 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRAY 99 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 666666666666666665544
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.04 E-value=8.3e-05 Score=61.05 Aligned_cols=91 Identities=11% Similarity=0.041 Sum_probs=55.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC
Q 009506 185 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 264 (533)
Q Consensus 185 l~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 264 (533)
...|.+.|++++|+..|++..+.... +...|..+...|...|++++|++.|+...+.. +-+...|..+..+|...|+
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~--p~~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHhhhccccchh-hhhhhhhhHHHHHhccccchHHHHHHHHHHHc--ccchHHHHHHHHHHHHcCC
Confidence 34455666666666666666665433 55666666666666666666666666665543 3445566666666666666
Q ss_pred hHHHHHHHHHHHHc
Q 009506 265 VSEAEAMFNEMLEA 278 (533)
Q Consensus 265 ~~~A~~~~~~m~~~ 278 (533)
+++|...|++....
T Consensus 94 ~~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 94 FRAALRDYETVVKV 107 (159)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 66666666665553
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.01 E-value=0.0021 Score=59.08 Aligned_cols=270 Identities=12% Similarity=0.086 Sum_probs=134.7
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009506 106 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 185 (533)
Q Consensus 106 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 185 (533)
||..--..+.+.|.+.|.++.|..+|..+.. |..++..+.+.+++..|.+++... -+..+|..+.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~ 76 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVC 76 (336)
T ss_dssp C----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHH
Confidence 3444445566677778888888888876643 567777777888888777766543 2456777777
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCh
Q 009506 186 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 265 (533)
Q Consensus 186 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 265 (533)
.++.+......+ .+...+...+......++..|-..|.+++...+++...... ..+...++-++..|++.+.
T Consensus 77 ~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~--~~~~~~~~~L~~lyak~~~- 148 (336)
T d1b89a_ 77 FACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE--RAHMGMFTELAILYSKFKP- 148 (336)
T ss_dssp HHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST--TCCHHHHHHHHHHHHTTCH-
T ss_pred HHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC--ccchHHHHHHHHHHHHhCh-
Confidence 777766555432 22223333455556677788888888888888887765432 4566677777777777543
Q ss_pred HHHHHHHHHHHHcCCCCCHH----------HHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-
Q 009506 266 SEAEAMFNEMLEAGFEPNLF----------VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK- 334 (533)
Q Consensus 266 ~~A~~~~~~m~~~g~~p~~~----------~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~- 334 (533)
++ +.+.+....-.-|.. .|..++-.|.+.|++++|..+.-.= .++..-...++..+.+..+
T Consensus 149 ~k---l~e~l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~~-----~~~~~~~~~f~e~~~k~~N~ 220 (336)
T d1b89a_ 149 QK---MREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH-----PTDAWKEGQFKDIITKVANV 220 (336)
T ss_dssp HH---HHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHS-----TTTTCCHHHHHHHHHHCSST
T ss_pred HH---HHHHHHhccccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHHc-----chhhhhHHHHHHHHHccCCh
Confidence 22 333332211111211 1333444444555555444432211 1111112233444444444
Q ss_pred HHHHHHHHHHHhcCCChhHHHHHHHH------------hhhhhccHHHHHHHHHhhhccCccchhhHHHHHHHHhcCCHH
Q 009506 335 EELGKLVECVEKSNSKLGYVVKLLLE------------EQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLE 402 (533)
Q Consensus 335 ~~a~~~~~~~~~~~~~~~~~~~~l~~------------~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 402 (533)
+...+++....+.+|..-. .+|.. ...+.+++ .-...+++......+..+.++|...|...++++
T Consensus 221 e~~~~~i~~yL~~~p~~i~--~lL~~v~~~~d~~r~V~~~~k~~~l-~li~p~Le~v~~~n~~~vn~al~~lyie~~d~~ 297 (336)
T d1b89a_ 221 ELYYRAIQFYLEFKPLLLN--DLLMVLSPRLDHTRAVNYFSKVKQL-PLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQ 297 (336)
T ss_dssp HHHHHHHHHHHHHCGGGHH--HHHHHHGGGCCHHHHHHHHHHTTCT-TTTHHHHHHHHTTCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHcCHHHHH--HHHHHhccCCCHHHHHHHHHhcCCc-HHHHHHHHHHHHcChHHHHHHHHHHHhCcchhH
Confidence 4444444443443332211 11111 11122222 223333333333445568899999999999876
Q ss_pred HHHHHHH
Q 009506 403 NACKLLE 409 (533)
Q Consensus 403 ~A~~l~~ 409 (533)
.-.+.++
T Consensus 298 ~l~~~i~ 304 (336)
T d1b89a_ 298 ALRTSID 304 (336)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6555444
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.97 E-value=5e-05 Score=64.90 Aligned_cols=93 Identities=15% Similarity=0.029 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 009506 145 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 224 (533)
Q Consensus 145 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 224 (533)
.+....+.+.+.|++++|+..|++.++.. +-+...|..+..+|.+.|++++|+..|++..+.... +..+|..+..+|.
T Consensus 6 ~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~-~~~a~~~lg~~~~ 83 (201)
T d2c2la1 6 ELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQCQL 83 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence 33334444444444444444444444332 233444444444455555555555555444433222 3444555555555
Q ss_pred hcCCHHHHHHHHHHH
Q 009506 225 DVGYTDEAFEIFEDM 239 (533)
Q Consensus 225 ~~g~~~~A~~~~~~m 239 (533)
+.|++++|+..|+..
T Consensus 84 ~l~~~~~A~~~~~~a 98 (201)
T d2c2la1 84 EMESYDEAIANLQRA 98 (201)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHH
Confidence 555555555555443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.90 E-value=5.3e-05 Score=58.15 Aligned_cols=81 Identities=9% Similarity=0.025 Sum_probs=31.2
Q ss_pred hcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 009506 190 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 269 (533)
Q Consensus 190 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 269 (533)
+.|++++|+..|++..+.... +...|..+..++.+.|++++|+..|++..+.. +.+...|..+...|...|++++|.
T Consensus 28 ~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~la~~y~~~g~~~~A~ 104 (112)
T d1hxia_ 28 KLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAVSHTNEHNANAAL 104 (112)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhcccccccccc--cccccchHHHHHHHHHCCCHHHHH
Confidence 334444444444443333222 33333334444444444444444443333322 223333334444444444444444
Q ss_pred HHHH
Q 009506 270 AMFN 273 (533)
Q Consensus 270 ~~~~ 273 (533)
+.|+
T Consensus 105 ~~l~ 108 (112)
T d1hxia_ 105 ASLR 108 (112)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.82 E-value=0.0049 Score=54.51 Aligned_cols=225 Identities=14% Similarity=0.046 Sum_probs=117.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCcCHHHHH
Q 009506 142 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR----ARYGEDTLSVYREMKEKGMQLSVTLYN 217 (533)
Q Consensus 142 d~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~ 217 (533)
|+..+..|-..+.+.+++++|++.|++..+.| |...+..|-..|.. ..+...|...+....+.+ +.....
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~ 74 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 74 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhh
Confidence 34455666666667777777777777777665 44555555555554 456666777766666654 333333
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 009506 218 TLLAMCAD----VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC----RGKVSEAEAMFNEMLEAGFEPNLFVLTS 289 (533)
Q Consensus 218 ~li~~~~~----~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 289 (533)
.+...+.. ..+.+.|...++.....|. + .....+...+.. ......+...+...... .+...+..
T Consensus 75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~--~--~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~ 147 (265)
T d1ouva_ 75 LLGNLYYSGQGVSQNTNKALQYYSKACDLKY--A--EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTI 147 (265)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC--H--HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHH
T ss_pred ccccccccccccchhhHHHHHHHhhhhhhhh--h--hHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhh
Confidence 33333332 3456667776666665442 1 222222222221 23344555555554442 34444444
Q ss_pred HHHHHHh----cCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCChhHHHHHHHHhhhh-
Q 009506 290 LIQCYGK----AQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDI- 364 (533)
Q Consensus 290 li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~- 364 (533)
|...|.. ..+...+..+++...+.| +.... ..|+..|..
T Consensus 148 L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~---------------------------------~~lg~~y~~g 191 (265)
T d1ouva_ 148 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGC---------------------------------FNAGNMYHHG 191 (265)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH---------------------------------HHHHHHHHHT
T ss_pred hhhhhccCCCcccccccchhhhhcccccc---ccccc---------------------------------cchhhhcccC
Confidence 4444432 122222222333222222 11111 112222211
Q ss_pred ---hccHHHHHHHHHhhhccCccchhhHHHHHHHHh----cCCHHHHHHHHHHHHhccc
Q 009506 365 ---EGDFKKEATELFNSISKDVKKAYCNCLIDLCVN----LNLLENACKLLELGLTLEV 416 (533)
Q Consensus 365 ---~g~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~ 416 (533)
..+. ++|...|++.....+...+..|...|.+ ..+.++|.+.|++....|.
T Consensus 192 ~~~~~d~-~~A~~~~~~aa~~g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 192 EGATKNF-KEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp CSSCCCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred cccccch-hhhhhhHhhhhcccCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 2333 7788888777666667777777777765 3378889999988877764
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.79 E-value=7.1e-05 Score=58.33 Aligned_cols=24 Identities=8% Similarity=-0.003 Sum_probs=9.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Q 009506 218 TLLAMCADVGYTDEAFEIFEDMKS 241 (533)
Q Consensus 218 ~li~~~~~~g~~~~A~~~~~~m~~ 241 (533)
.+..+|.+.|++++|++.|+++.+
T Consensus 77 ~Lg~~y~~~g~~~~A~~~~~~aL~ 100 (122)
T d1nzna_ 77 YLAVGNYRLKEYEKALKYVRGLLQ 100 (122)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHH
Confidence 333344444444444444444333
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.78 E-value=0.01 Score=52.26 Aligned_cols=223 Identities=13% Similarity=0.037 Sum_probs=157.5
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHH
Q 009506 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGR----AKRPWQVKTIYKEMTDNGLSPNWNTYA 182 (533)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~ 182 (533)
|+..+..|-..+-+.+++++|++.|++..+.| |...+..|-..|.. ..+...+...++.....+ +.....
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~ 74 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 74 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhh
Confidence 56777888888889999999999999998865 66666667777765 568888999999888876 334444
Q ss_pred HHHHHHHh----cCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHhCCCCCCCHHHHHH
Q 009506 183 SLLRAYGR----ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA----DVGYTDEAFEIFEDMKSSENCQPDSWTFSS 254 (533)
Q Consensus 183 ~ll~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ 254 (533)
.|...+.. ..+.+.|...++...+.|.. .....+...+. .......+...+..... ..+...+..
T Consensus 75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~ 147 (265)
T d1ouva_ 75 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACD----LNDGDGCTI 147 (265)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH----TTCHHHHHH
T ss_pred ccccccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhc----ccccchhhh
Confidence 45444443 46778899999988887643 23333333333 34567788888887766 456777888
Q ss_pred HHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHhhhCCCCCCHHHHHHHH
Q 009506 255 MITICSC----RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK----AQRTDDVVRALNRLPELGITPDDRFCGCLL 326 (533)
Q Consensus 255 li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 326 (533)
|...|.. ..+...+...++...+.| +......|-..|.. ..+.++|..+|++..+.| +...+..|.
T Consensus 148 L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG 221 (265)
T d1ouva_ 148 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLG 221 (265)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred hhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHH
Confidence 8888876 456778888888877754 56666666555554 568999999999998887 455555566
Q ss_pred HHHhc----CCh-HHHHHHHHHHHhcC
Q 009506 327 NVMTQ----TPK-EELGKLVECVEKSN 348 (533)
Q Consensus 327 ~~~~~----~~~-~~a~~~~~~~~~~~ 348 (533)
..|.+ ..+ ++|.++++.....+
T Consensus 222 ~~y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 222 AMQYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHcCCCCccCHHHHHHHHHHHHHCc
Confidence 65553 223 77888888766554
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.78 E-value=0.00012 Score=55.94 Aligned_cols=91 Identities=13% Similarity=0.007 Sum_probs=76.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 009506 218 TLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 297 (533)
Q Consensus 218 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 297 (533)
.+...+.+.|++++|+..|++..... +-+...|..+..+|.+.|++++|...|++..+.. +-+...|..+...|...
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~ 97 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE 97 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccc--cccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHC
Confidence 34567788999999999999988765 4578899999999999999999999999988753 34588888999999999
Q ss_pred CChhHHHHHHHHhh
Q 009506 298 QRTDDVVRALNRLP 311 (533)
Q Consensus 298 g~~~~a~~~~~~m~ 311 (533)
|++++|.+.|++..
T Consensus 98 g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 98 HNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998753
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.69 E-value=0.00081 Score=55.53 Aligned_cols=128 Identities=7% Similarity=-0.063 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009506 109 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 188 (533)
Q Consensus 109 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 188 (533)
..+......|.+.|++++|+..|++....- |.. .+..+.-......+. ..+|+.+..+|
T Consensus 14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~--~~~------------~~~~~~~~~~~~~~~-------~~~~~nla~~y 72 (170)
T d1p5qa1 14 TIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYE------------SSFSNEEAQKAQALR-------LASHLNLAMCH 72 (170)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTC------------CCCCSHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHh--hhc------------cccchHHHhhhchhH-------HHHHHHHHHHH
Confidence 345556678888999999999998876531 100 000111111111111 13556667777
Q ss_pred HhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 009506 189 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 260 (533)
Q Consensus 189 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~ 260 (533)
.+.|++++|+..++...+.... +..+|..+..+|...|++++|+..|+...+.. +-|......+-...-
T Consensus 73 ~k~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~--P~n~~~~~~l~~~~~ 141 (170)
T d1p5qa1 73 LKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY--PNNKAAKTQLAVCQQ 141 (170)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHH
T ss_pred Hhhhhcccccchhhhhhhcccc-chhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH
Confidence 7777777777777777766443 66777777777777777777777777776643 224444444444433
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.65 E-value=0.00025 Score=55.10 Aligned_cols=94 Identities=9% Similarity=-0.011 Sum_probs=58.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCCC-HHHHHHHHHH
Q 009506 183 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY---TDEAFEIFEDMKSSENCQPD-SWTFSSMITI 258 (533)
Q Consensus 183 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~ 258 (533)
.|++.+...+++++|++.|+.....+.. +..++..+..++.+.++ +++|+++|+++..... .|+ ..+|..+..+
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~-~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~-~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAGSV-SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGS-KEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSC-HHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccC-CchHHHHHHHHHHH
Confidence 4556666666777777777776665543 56666666666665443 3457777776665431 222 2356666777
Q ss_pred HHhcCChHHHHHHHHHHHHc
Q 009506 259 CSCRGKVSEAEAMFNEMLEA 278 (533)
Q Consensus 259 ~~~~g~~~~A~~~~~~m~~~ 278 (533)
|.+.|++++|.+.|+++.+.
T Consensus 82 y~~~g~~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQT 101 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHh
Confidence 77777777777777777663
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.64 E-value=0.001 Score=54.97 Aligned_cols=129 Identities=12% Similarity=0.043 Sum_probs=88.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 009506 145 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 224 (533)
Q Consensus 145 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 224 (533)
.+......+.+.|++++|+..|++.++.- |. ..+..+.-......+ -..+|+.+..+|.
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~--~~------------~~~~~~~~~~~~~~~-------~~~~~~nla~~y~ 73 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWL--EY------------ESSFSNEEAQKAQAL-------RLASHLNLAMCHL 73 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TT------------CCCCCSHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHh--hh------------ccccchHHHhhhchh-------HHHHHHHHHHHHH
Confidence 34555667788888888888888776521 00 000001111111111 1346777889999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcC
Q 009506 225 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP-NLFVLTSLIQCYGKAQ 298 (533)
Q Consensus 225 ~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g 298 (533)
+.|++++|++.++...... +.+...|..+..+|...|++++|...|++..+.. | |......+-....+.+
T Consensus 74 k~~~~~~A~~~~~~al~~~--p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~--P~n~~~~~~l~~~~~~~~ 144 (170)
T d1p5qa1 74 KLQAFSAAIESCNKALELD--SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY--PNNKAAKTQLAVCQQRIR 144 (170)
T ss_dssp HTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHHH
T ss_pred hhhhcccccchhhhhhhcc--ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHH
Confidence 9999999999999988865 5589999999999999999999999999998853 5 4555544444443333
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.52 E-value=0.0012 Score=54.91 Aligned_cols=71 Identities=13% Similarity=0.121 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCCHH
Q 009506 213 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE-----AGFEPNLF 285 (533)
Q Consensus 213 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~ 285 (533)
...+..+...+.+.|++++|+..++++.... +-+...|..++.+|.+.|+.++|.+.|+++.. .|+.|...
T Consensus 67 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~--P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~ 142 (179)
T d2ff4a2 67 VLAHTAKAEAEIACGRASAVIAELEALTFEH--PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 142 (179)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHH
Confidence 3456666677777777777777777776654 45667777777777777777777777776532 35555543
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.49 E-value=0.0011 Score=55.20 Aligned_cols=123 Identities=9% Similarity=0.010 Sum_probs=71.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 009506 113 TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 192 (533)
Q Consensus 113 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 192 (533)
.........|++++|.+.|.+.... .+... +......+-+...-..+.. -....+..+...+.+.|
T Consensus 16 ~~g~~~~~~g~~e~A~~~~~~AL~l--~rG~~--------l~~~~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~~g 81 (179)
T d2ff4a2 16 TAGVHAAAAGRFEQASRHLSAALRE--WRGPV--------LDDLRDFQFVEPFATALVE----DKVLAHTAKAEAEIACG 81 (179)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTT--CCSST--------TGGGTTSTTHHHHHHHHHH----HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhh--Ccccc--------cccCcchHHHHHHHHHHHH----HHHHHHHHHHHHHHHCC
Confidence 3445678899999999999998863 11110 0000010111111111111 01245566677777777
Q ss_pred ChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCCHHH
Q 009506 193 YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS-----SENCQPDSWT 251 (533)
Q Consensus 193 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~p~~~~ 251 (533)
++++|+..++++.+.... +...|..++.+|.+.|+.++|++.|+++.. .|+ .|...+
T Consensus 82 ~~~~Al~~~~~al~~~P~-~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~-~P~~~l 143 (179)
T d2ff4a2 82 RASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGI-DPGPTL 143 (179)
T ss_dssp CHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSC-CCCHHH
T ss_pred CchHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCC-CcCHHH
Confidence 777777777777766443 667777777777777777777777766532 454 666544
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.45 E-value=0.0035 Score=50.49 Aligned_cols=123 Identities=11% Similarity=0.007 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009506 110 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 189 (533)
Q Consensus 110 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 189 (533)
.+..-...+.+.|++.+|+..|.+..+.- +... ...+.... ..... ....+|+.+..+|.
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~--~~~~------------~~~~~~~~--~~~~~----~~~~~~~Nla~~~~ 78 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTE------------EWDDQILL--DKKKN----IEISCNLNLATCYN 78 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCT------------TCCCHHHH--HHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cchh------------hhhhHHHH--Hhhhh----HHHHHHhhHHHHHH
Confidence 34555667788999999999999887531 1000 00000000 00000 11246677777888
Q ss_pred hcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHH
Q 009506 190 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 255 (533)
Q Consensus 190 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~l 255 (533)
+.|++++|++.+++..+.... +..+|..+..+|...|++++|+..|+...+.. +-|......+
T Consensus 79 ~l~~~~~Al~~~~~al~~~p~-~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~--P~n~~~~~~l 141 (153)
T d2fbna1 79 KNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASLN--PNNLDIRNSY 141 (153)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHH
T ss_pred Hhcccchhhhhhhccccccch-hhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHH
Confidence 888888888888887776543 67788888888888888888888888877753 2344444443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.42 E-value=0.0023 Score=51.61 Aligned_cols=123 Identities=12% Similarity=0.014 Sum_probs=86.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 009506 145 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 224 (533)
Q Consensus 145 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 224 (533)
.+..-...+.+.|++.+|+..|.+.+..- +. ...... .......... ...+|+.+..+|.
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~--~~-------------~~~~~~-~~~~~~~~~~----~~~~~~Nla~~~~ 78 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFF--IH-------------TEEWDD-QILLDKKKNI----EISCNLNLATCYN 78 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TT-------------CTTCCC-HHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cc-------------hhhhhh-HHHHHhhhhH----HHHHHhhHHHHHH
Confidence 34445566778899999999988877531 10 000000 0001111111 3457888999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHH
Q 009506 225 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN-LFVLTSLI 291 (533)
Q Consensus 225 ~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li 291 (533)
+.|++++|++.++...+.. +.+..+|..+..+|...|++++|...|+...+.. |+ ......+-
T Consensus 79 ~l~~~~~Al~~~~~al~~~--p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~--P~n~~~~~~l~ 142 (153)
T d2fbna1 79 KNKDYPKAIDHASKVLKID--KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN--PNNLDIRNSYE 142 (153)
T ss_dssp HTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHH
T ss_pred Hhcccchhhhhhhcccccc--chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence 9999999999999988865 5689999999999999999999999999988853 54 44444433
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.38 E-value=0.0015 Score=53.79 Aligned_cols=132 Identities=6% Similarity=-0.017 Sum_probs=81.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 009506 111 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 190 (533)
Q Consensus 111 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 190 (533)
+......+.+.|++++|++.|.+..+. +..........+...+ . +.+...|..+..+|.+
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~------------~~~~~~~~~~~~~~~~----~----~~~~~~~~nla~~~~~ 89 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRY------------VEGSRAAAEDADGAKL----Q----PVALSCVLNIGACKLK 89 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH------------HHHHHHHSCHHHHGGG----H----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh------------hhhhhhhhhhHHHHHh----C----hhhHHHHHHHHHHHHh
Confidence 455677788999999999999887541 0000000111111000 0 1133456667777778
Q ss_pred cCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCh
Q 009506 191 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 265 (533)
Q Consensus 191 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 265 (533)
.|++++|+..+.+..+.... +...|..+..+|...|++++|++.|+...+.. +.+......+..+..+....
T Consensus 90 ~~~~~~Ai~~~~~al~~~p~-~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~--p~n~~~~~~l~~~~~~l~~~ 161 (169)
T d1ihga1 90 MSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA--PEDKAIQAELLKVKQKIKAQ 161 (169)
T ss_dssp TTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHH
T ss_pred hcccchhhhhhhhhhhhhhh-hhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHH
Confidence 88888888888887776543 67777778888888888888888887777754 34555566555555444333
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.35 E-value=0.0013 Score=54.06 Aligned_cols=131 Identities=9% Similarity=0.015 Sum_probs=89.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc
Q 009506 147 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 226 (533)
Q Consensus 147 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 226 (533)
......+...|++++|++.|++.++. .............. .+. +.....|+.+..+|.+.
T Consensus 31 ~~~~~~~~~~~~y~~Ai~~y~~al~~------------~~~~~~~~~~~~~~----~~~----~~~~~~~~nla~~~~~~ 90 (169)
T d1ihga1 31 KNIGNTFFKSQNWEMAIKKYTKVLRY------------VEGSRAAAEDADGA----KLQ----PVALSCVLNIGACKLKM 90 (169)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH------------HHHHHHHSCHHHHG----GGH----HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh------------hhhhhhhhhhHHHH----HhC----hhhHHHHHHHHHHHHhh
Confidence 34455567889999999888877641 01000001111110 001 11456778888999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 009506 227 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 300 (533)
Q Consensus 227 g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 300 (533)
|++++|+..+++..+.. +.+...|..+..+|.+.|++++|.+.|+...+.. +.+......+..+..+....
T Consensus 91 ~~~~~Ai~~~~~al~~~--p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~~~~~~l~~~~~~l~~~ 161 (169)
T d1ihga1 91 SDWQGAVDSCLEALEID--PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQ 161 (169)
T ss_dssp TCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhhhhhhhhh--hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999865 5688999999999999999999999999998853 23555666665555444333
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.30 E-value=0.0009 Score=52.28 Aligned_cols=94 Identities=12% Similarity=0.149 Sum_probs=57.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCC----HHHHHHH
Q 009506 217 NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG--FEPN----LFVLTSL 290 (533)
Q Consensus 217 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~----~~~~~~l 290 (533)
-.+...|.+.|++++|++.|++..+.+ +.+...|..+..+|.+.|++++|.+.++++.+.. .... ..+|..+
T Consensus 8 k~~G~~~~~~~~y~~Ai~~y~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l 85 (128)
T d1elra_ 8 KELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (128)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 344556666677777777776666654 4456667777777777777777777777655421 0000 2355566
Q ss_pred HHHHHhcCChhHHHHHHHHhhh
Q 009506 291 IQCYGKAQRTDDVVRALNRLPE 312 (533)
Q Consensus 291 i~~~~~~g~~~~a~~~~~~m~~ 312 (533)
...+...+++++|+..|++...
T Consensus 86 g~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 86 GNSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHh
Confidence 6666677777777777766554
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.28 E-value=0.0025 Score=49.60 Aligned_cols=90 Identities=14% Similarity=0.119 Sum_probs=39.4
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC-----HHHHHHHHHHHH
Q 009506 186 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD-----SWTFSSMITICS 260 (533)
Q Consensus 186 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-----~~~~~~li~~~~ 260 (533)
..|.+.|++++|+..|.+.++.+.. +...|..+..+|.+.|++++|++.++++.+...-.+. ..+|..+...+.
T Consensus 12 ~~~~~~~~y~~Ai~~y~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~~ 90 (128)
T d1elra_ 12 NDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYF 90 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444322 3444444444444445555554444443321100000 123444444555
Q ss_pred hcCChHHHHHHHHHHH
Q 009506 261 CRGKVSEAEAMFNEML 276 (533)
Q Consensus 261 ~~g~~~~A~~~~~~m~ 276 (533)
..+++++|.+.|.+..
T Consensus 91 ~~~~~~~A~~~~~kal 106 (128)
T d1elra_ 91 KEEKYKDAIHFYNKSL 106 (128)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHH
Confidence 5555555555555443
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.28 E-value=0.0027 Score=52.06 Aligned_cols=60 Identities=10% Similarity=-0.058 Sum_probs=30.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009506 181 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 241 (533)
Q Consensus 181 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 241 (533)
|+.+..+|.+.|++++|+..++...+.... +...|..+..+|...|++++|++.|+....
T Consensus 67 ~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~~~~~~~l~~~~~A~~~~~~al~ 126 (168)
T d1kt1a1 67 FLNLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLE 126 (168)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHhhhcccchhhhhhhhhcccc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334444455555555555555555544322 444555555555555555555555555544
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.19 E-value=0.0043 Score=50.79 Aligned_cols=63 Identities=11% Similarity=0.055 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 009506 214 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA 278 (533)
Q Consensus 214 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 278 (533)
.+|+.+..+|.+.|++++|+..++...... +.+...|..+..+|...|++++|...|.+..+.
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~--p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLD--SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcc--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345566677777888888888887777654 556777777778888888888888888877764
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.12 E-value=0.00054 Score=61.06 Aligned_cols=50 Identities=8% Similarity=-0.092 Sum_probs=22.0
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 009506 156 AKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 206 (533)
Q Consensus 156 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 206 (533)
.|++++|+..|++.++.. +-|...+..+...|+..|++++|.+.|+...+
T Consensus 9 ~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~ 58 (264)
T d1zbpa1 9 EGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK 58 (264)
T ss_dssp TTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344444444444444432 23334444444444444444444444444443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.03 E-value=0.024 Score=51.73 Aligned_cols=211 Identities=12% Similarity=0.100 Sum_probs=128.2
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHH
Q 009506 175 SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 254 (533)
Q Consensus 175 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ 254 (533)
.||..-...+.+-|.+.|.++.|..+|..+.. |..++..+.+.+++..|.+++... -+..+|..
T Consensus 11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~-------~~~~~~k~ 74 (336)
T d1b89a_ 11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKE 74 (336)
T ss_dssp CC----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHH-------TCHHHHHH
T ss_pred CCCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHc-------CCHHHHHH
Confidence 36666666788888899999999999976543 667888889999999998888654 35668888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh
Q 009506 255 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 334 (533)
Q Consensus 255 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 334 (533)
+...+.+......| .+.......+......++..|-..|.+++...+++..... -..+...++.++..|++.+.
T Consensus 75 ~~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~~ 148 (336)
T d1b89a_ 75 VCFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFKP 148 (336)
T ss_dssp HHHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhCh
Confidence 99999888776543 2223334456777788999999999999999999987643 24566788899999999877
Q ss_pred HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhccC-----------ccchhhHHHHHHHHhcCCHHH
Q 009506 335 EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKD-----------VKKAYCNCLIDLCVNLNLLEN 403 (533)
Q Consensus 335 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~ 403 (533)
+...+.+... ....+...++. .+...+ +.+++.-++.++... ++..-....++.+.+.++++.
T Consensus 149 ~kl~e~l~~~-s~~y~~~k~~~----~c~~~~-l~~elv~Ly~~~~~~~~A~~~~i~~~~~~~~~~~f~e~~~k~~N~e~ 222 (336)
T d1b89a_ 149 QKMREHLELF-WSRVNIPKVLR----AAEQAH-LWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVEL 222 (336)
T ss_dssp HHHHHHHHHH-STTSCHHHHHH----HHHTTT-CHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHH
T ss_pred HHHHHHHHhc-cccCCHHHHHH----HHHHcC-ChHHHHHHHHhcCCHHHHHHHHHHcchhhhhHHHHHHHHHccCChHH
Confidence 5444443322 11223322222 222222 235555555555431 222233556777778777777
Q ss_pred HHHHHHHHHh
Q 009506 404 ACKLLELGLT 413 (533)
Q Consensus 404 A~~l~~~m~~ 413 (533)
.-+++...++
T Consensus 223 ~~~~i~~yL~ 232 (336)
T d1b89a_ 223 YYRAIQFYLE 232 (336)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666655443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.99 E-value=0.0016 Score=51.98 Aligned_cols=112 Identities=8% Similarity=-0.013 Sum_probs=56.1
Q ss_pred CChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh----------cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh
Q 009506 192 RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD----------VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 261 (533)
Q Consensus 192 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----------~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 261 (533)
+.+++|++.|+...+..+. +..++..+..+|.. .+.+++|++.|++..+.. +.+..+|..+..+|..
T Consensus 11 ~~fe~A~~~~e~al~~~P~-~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~--P~~~~a~~~lG~~y~~ 87 (145)
T d1zu2a1 11 LLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID--PKKDEAVWCIGNAYTS 87 (145)
T ss_dssp HHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhCCc-chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc--chhhHHHhhHHHHHHH
Confidence 3344444444444444322 34444444433332 233456666666666543 3456666666666655
Q ss_pred cCC-----------hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCC
Q 009506 262 RGK-----------VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 314 (533)
Q Consensus 262 ~g~-----------~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 314 (533)
.|+ +++|.+.|++..+. .|+...|..-+..+ ..|.+++.+..+.|
T Consensus 88 ~g~~~~~~~~~~~~~~~A~~~~~kal~l--~P~~~~~~~~L~~~------~ka~~~~~e~~k~~ 143 (145)
T d1zu2a1 88 FAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMT------AKAPQLHAEAYKQG 143 (145)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH------HTHHHHHHHHHHSS
T ss_pred cccchhhHHHHHHhHHHhhhhhhccccc--CCCHHHHHHHHHHH------HHHHHHHHHHHHHh
Confidence 432 45666666665553 35555444433333 34455555555444
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.95 E-value=0.00052 Score=61.19 Aligned_cols=51 Identities=18% Similarity=0.259 Sum_probs=27.4
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 009506 225 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 277 (533)
Q Consensus 225 ~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 277 (533)
+.|++++|++.+++..+.. +.|...+..+...|+..|++++|.+.|+...+
T Consensus 8 ~~G~l~eAl~~l~~al~~~--P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~ 58 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKAS--PKDASLRSSFIELLCIDGDFERADEQLMQSIK 58 (264)
T ss_dssp TTTCHHHHHHHHHHHHHTC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3455555555555555443 34455555555555555555555555555544
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.76 E-value=0.0037 Score=49.81 Aligned_cols=126 Identities=10% Similarity=0.067 Sum_probs=68.4
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 009506 118 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 197 (533)
Q Consensus 118 ~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 197 (533)
|-+.+.+++|+..|+...+.. +-|..+|..+-.++...+++..+.+- .+.+++|
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~-------------------------~~~~~~A 60 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDA-------------------------KQMIQEA 60 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHH-------------------------HHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHH-------------------------HHHHHHH
Confidence 445667778888888776642 33556666666666544333222111 1122344
Q ss_pred HHHHHHHHHcCCCcCHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChH
Q 009506 198 LSVYREMKEKGMQLSVTLYNTLLAMCADVG-----------YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 266 (533)
Q Consensus 198 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-----------~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 266 (533)
+..|++..+.... +..+|+.+..+|...| .+++|.+.|+...+. .|+...|...+..+ .
T Consensus 61 i~~~~kAl~l~P~-~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l---~P~~~~~~~~L~~~------~ 130 (145)
T d1zu2a1 61 ITKFEEALLIDPK-KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE---QPDNTHYLKSLEMT------A 130 (145)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHH------H
T ss_pred HHHHHHHHHhcch-hhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccccc---CCCHHHHHHHHHHH------H
Confidence 4444444444332 3444444444444332 357788888877763 56666655555444 4
Q ss_pred HHHHHHHHHHHcC
Q 009506 267 EAEAMFNEMLEAG 279 (533)
Q Consensus 267 ~A~~~~~~m~~~g 279 (533)
+|.+++.+..+.|
T Consensus 131 ka~~~~~e~~k~~ 143 (145)
T d1zu2a1 131 KAPQLHAEAYKQG 143 (145)
T ss_dssp THHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHh
Confidence 5666666666555
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.64 E-value=0.014 Score=46.76 Aligned_cols=62 Identities=13% Similarity=0.098 Sum_probs=37.1
Q ss_pred HHHHHH--HHHHHHcCChHHHHHHHHHHHHCCC-CCC----------HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 009506 109 NAFSTL--IKLYGTAGNFDGCLNVYEEMKAIGV-KPN----------MITYNNLLDTMGRAKRPWQVKTIYKEMT 170 (533)
Q Consensus 109 ~~~~~l--i~~~~~~g~~~~A~~~~~~m~~~g~-~pd----------~~~~~~li~~~~~~g~~~~a~~~~~~m~ 170 (533)
.+|..+ ...+.+.|++++|+..|++..+... .|+ ...|+.+..+|...|++++|+..+++.+
T Consensus 8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al 82 (156)
T d2hr2a1 8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKAL 82 (156)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhh
Confidence 345555 4445566888888888887764210 111 2456666666666677666666666554
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.56 E-value=0.019 Score=45.98 Aligned_cols=98 Identities=14% Similarity=0.119 Sum_probs=62.5
Q ss_pred HHHHH--HHHHHhcCCHHHHHHHHHHHHhCCCCCC----------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----
Q 009506 215 LYNTL--LAMCADVGYTDEAFEIFEDMKSSENCQP----------DSWTFSSMITICSCRGKVSEAEAMFNEMLEA---- 278 (533)
Q Consensus 215 ~~~~l--i~~~~~~g~~~~A~~~~~~m~~~~~~~p----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---- 278 (533)
+|..+ ...+...|++++|++.|++..+...-.| ....|+.+..+|.+.|++++|...+++....
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~ 88 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 88 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence 44444 3345566777777777776654211011 1456777888888888888888887776531
Q ss_pred -CCCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 009506 279 -GFEPN-----LFVLTSLIQCYGKAQRTDDVVRALNRLPE 312 (533)
Q Consensus 279 -g~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 312 (533)
...++ ...++.+..+|...|++++|+..|++..+
T Consensus 89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222 22466677888888888888888888654
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.19 E-value=0.0073 Score=59.06 Aligned_cols=114 Identities=10% Similarity=-0.053 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 009506 143 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 222 (533)
Q Consensus 143 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 222 (533)
...+..+...+.+.|+.++|...++...... ...++..+...+...|++++|...|++..+.... +...|+.|...
T Consensus 120 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~~~Lg~~ 195 (497)
T d1ya0a1 120 RVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAIL 195 (497)
T ss_dssp -----------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHH
T ss_pred HHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-chHHHHHHHHH
Confidence 3444555555556666666655554443311 1234555666666666666666666666665433 45666666666
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc
Q 009506 223 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 262 (533)
Q Consensus 223 ~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 262 (533)
+...|+..+|...|.+..... +|-..++..|...|.+.
T Consensus 196 ~~~~~~~~~A~~~y~ral~~~--~~~~~a~~nL~~~~~~~ 233 (497)
T d1ya0a1 196 ASSKGDHLTTIFYYCRSIAVK--FPFPAASTNLQKALSKA 233 (497)
T ss_dssp HHHTTCHHHHHHHHHHHHSSS--BCCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHHh
Confidence 666666666666666666544 45566666666655543
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.18 E-value=0.011 Score=57.61 Aligned_cols=168 Identities=10% Similarity=-0.000 Sum_probs=93.4
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 009506 124 FDGCLNVYEEMKAIGVKPNMITYNNLLDTM--GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 201 (533)
Q Consensus 124 ~~~A~~~~~~m~~~g~~pd~~~~~~li~~~--~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 201 (533)
+..+++.++...+....++..-....+..+ ...+.++.++..+....+.. .++...+..+...+.+.|+.+.|...+
T Consensus 65 y~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~ 143 (497)
T d1ya0a1 65 FKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQ 143 (497)
T ss_dssp THHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------C
T ss_pred HHHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHH
Confidence 456677777666543333332222222121 22344445544444333221 244567777888888899999988877
Q ss_pred HHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 009506 202 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE 281 (533)
Q Consensus 202 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 281 (533)
....... ...++..+...+...|++++|+..|++..+.. +.+...|+.|...|...|+..+|...|.+..... .
T Consensus 144 ~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~--P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~ 217 (497)
T d1ya0a1 144 SSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLV--PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-F 217 (497)
T ss_dssp CHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-B
T ss_pred HHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-C
Confidence 7655432 13567778889999999999999999988864 5577899999999999999999999999987654 4
Q ss_pred CCHHHHHHHHHHHHhcC
Q 009506 282 PNLFVLTSLIQCYGKAQ 298 (533)
Q Consensus 282 p~~~~~~~li~~~~~~g 298 (533)
|...++..|...|.+..
T Consensus 218 ~~~~a~~nL~~~~~~~~ 234 (497)
T d1ya0a1 218 PFPAASTNLQKALSKAL 234 (497)
T ss_dssp CCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhh
Confidence 67888888888776543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.43 E-value=0.067 Score=38.44 Aligned_cols=65 Identities=9% Similarity=-0.101 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHC-----CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 009506 108 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAI-----GVKPN-MITYNNLLDTMGRAKRPWQVKTIYKEMTDN 172 (533)
Q Consensus 108 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~pd-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 172 (533)
+..+-.+...+.+.|++++|+..|++..+. ...++ ..+++.|..++.+.|++++|++.+++.++.
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 344456677777888888888888776542 11112 456777777777777777777777777764
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.22 E-value=0.12 Score=37.07 Aligned_cols=65 Identities=8% Similarity=-0.087 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCC-----CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 009506 145 TYNNLLDTMGRAKRPWQVKTIYKEMTDNG-----LSPN-WNTYASLLRAYGRARYGEDTLSVYREMKEKGM 209 (533)
Q Consensus 145 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g-----~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~ 209 (533)
.+-.+...+.+.|++++|+..|++..+.. ..++ ..+++.|..+|.+.|++++|+..+++..+..+
T Consensus 7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P 77 (95)
T d1tjca_ 7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP 77 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCc
Confidence 34456666777777777777777665321 1122 35666677777777777777777777666543
|
| >d2d9ia1 d.68.8.1 (A:8-90) Nedd4-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: IF3-like superfamily: SMR domain-like family: Smr domain domain: Nedd4-binding protein 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.19 E-value=0.058 Score=37.68 Aligned_cols=78 Identities=21% Similarity=0.278 Sum_probs=56.5
Q ss_pred eecccccChhhHHHHHHHHHHHHHHHHHcCCCCCCceEEEeeeccccccc-hhHHHHHHHHhhhcCCCCCCCCCCcceEE
Q 009506 429 SLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSD-KGLASVFESHLKELNAPFHDSPDKVGWFL 507 (533)
Q Consensus 429 ~~~l~~~~~g~~~~a~~~~~~~l~~~~~~g~~~p~~~~i~~~~~~~~~~~-~~l~~~~~~~L~~~~~~f~~~~~~~g~~~ 507 (533)
.++++++....|...+..++....+....... ...+.|+||.|.|+... .-++.++...|.+-.-.|.+ .|.|+++
T Consensus 3 ~iDLHG~~~~eA~~~l~~~l~~~~~~~~~~~~-~~~l~IItG~G~hS~~g~~~lk~~V~~~L~~~~~~~~e--~~~G~~~ 79 (83)
T d2d9ia1 3 VLDLHGLHVDEALEHLMRVLEKKTEEFKQNGG-KPYLSVITGRGNHSQGGVARIKPAVIKYLISHSFRFSE--IKPGCLK 79 (83)
T ss_dssp EEECTTSCHHHHHHHHHHHHHHHHHHHHHTTC-CSEEEEECCCSGGGTTCTTCHHHHHHHHHHHTTCCEEC--CSTTCEE
T ss_pred eEECCCCCHHHHHHHHHHHHHHHHHhhhhcCC-ceEEEEEECCCCCCCCCcchHHHHHHHHHHHCCCceec--CCCcEEE
Confidence 35899999999999988887665443322222 23578999999998643 34899999999998777764 4679887
Q ss_pred Ee
Q 009506 508 TT 509 (533)
Q Consensus 508 ~~ 509 (533)
..
T Consensus 80 V~ 81 (83)
T d2d9ia1 80 VM 81 (83)
T ss_dssp EE
T ss_pred EE
Confidence 53
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=94.70 E-value=0.5 Score=35.91 Aligned_cols=78 Identities=8% Similarity=0.017 Sum_probs=35.1
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHH
Q 009506 123 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR----ARYGEDTL 198 (533)
Q Consensus 123 ~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~ 198 (533)
++++|++.|++..+.|.. ..+..|. .....+.++|++.|++..+.| +...+..|-..|.. ..+.++|.
T Consensus 8 d~~~A~~~~~kaa~~g~~---~a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~ 79 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNEM---FGCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 79 (133)
T ss_dssp HHHHHHHHHHHHHHTTCT---THHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHHCCCh---hhhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence 566677777666665421 1222222 122334555555555555544 23333333333332 23344445
Q ss_pred HHHHHHHHcC
Q 009506 199 SVYREMKEKG 208 (533)
Q Consensus 199 ~~~~~m~~~g 208 (533)
+.|++..+.|
T Consensus 80 ~~~~~aa~~g 89 (133)
T d1klxa_ 80 QYYSKACGLN 89 (133)
T ss_dssp HHHHHHHHTT
T ss_pred HHHhhhhccC
Confidence 5554444443
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=94.29 E-value=0.76 Score=34.82 Aligned_cols=78 Identities=9% Similarity=-0.073 Sum_probs=36.2
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh----cCCHHHHH
Q 009506 158 RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD----VGYTDEAF 233 (533)
Q Consensus 158 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~ 233 (533)
++++|++.|++..+.|. + ..+..|. .....+.++|.+.+++..+.| +...+..|-..|.. ..+.++|+
T Consensus 8 d~~~A~~~~~kaa~~g~-~--~a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~ 79 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNE-M--FGCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 79 (133)
T ss_dssp HHHHHHHHHHHHHHTTC-T--THHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHHCCC-h--hhhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence 45566666666666552 1 1122221 122344555555555555554 33333334333332 23455555
Q ss_pred HHHHHHHhCC
Q 009506 234 EIFEDMKSSE 243 (533)
Q Consensus 234 ~~~~~m~~~~ 243 (533)
++|++..+.|
T Consensus 80 ~~~~~aa~~g 89 (133)
T d1klxa_ 80 QYYSKACGLN 89 (133)
T ss_dssp HHHHHHHHTT
T ss_pred HHHhhhhccC
Confidence 5555555433
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=93.46 E-value=1 Score=33.42 Aligned_cols=62 Identities=16% Similarity=0.166 Sum_probs=29.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 009506 216 YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 279 (533)
Q Consensus 216 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 279 (533)
++..++...+.|.-+.-.++++++.+.+ +++....-.+..+|.+.|...++.+++.+.-+.|
T Consensus 89 vdlALd~lv~~~kkd~Ld~i~~~l~kn~--~i~~~~llkia~A~kkig~~re~nell~~ACe~G 150 (161)
T d1wy6a1 89 VNKALDILVIQGKRDKLEEIGREILKNN--EVSASILVAIANALRRVGDERDATTLLIEACKKG 150 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC--C--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 3334444444555555555554444333 4444444445555555555555555555544444
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=92.60 E-value=1.4 Score=32.67 Aligned_cols=68 Identities=16% Similarity=0.160 Sum_probs=47.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCC
Q 009506 248 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 316 (533)
Q Consensus 248 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 316 (533)
+...+...++...+.|.-+.-.++++.+.+.+ .+++.....+..+|.+.|...++-+++.+.-+.|++
T Consensus 85 ~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 85 LNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 33445566677777777777777777765533 567777777777888888888888777777777654
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=87.00 E-value=2.4 Score=29.74 Aligned_cols=50 Identities=18% Similarity=0.296 Sum_probs=36.1
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 009506 158 RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 207 (533)
Q Consensus 158 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 207 (533)
+.-++.+-++.+....+.|++.+..+.+++|.|.+++..|.++|+..+.+
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K 70 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 70 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44456666666666677777777777777777777777777777777654
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=84.91 E-value=3.4 Score=28.91 Aligned_cols=50 Identities=12% Similarity=0.184 Sum_probs=31.9
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC
Q 009506 264 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 313 (533)
Q Consensus 264 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 313 (533)
|.-++.+-++.+....+.|++....+-+++|.+.+++..|.++|+-++.+
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K 70 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 70 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34455555555555666677777777777777777777777777666543
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.09 E-value=6.3 Score=29.03 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=10.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH
Q 009506 254 SMITICSCRGKVSEAEAMFNEMLE 277 (533)
Q Consensus 254 ~li~~~~~~g~~~~A~~~~~~m~~ 277 (533)
.|.-+|.+.|++++|.+.++.+.+
T Consensus 78 ~Lav~yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 78 YLTIGCYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHc
Confidence 333344444444444444444444
|