Citrus Sinensis ID: 009555

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530--
MRERERERERQRGSRSQTLLLLPDPIFFINFFYLQNSRLLSLLNKIHPSLIFIHCFFLLQTDRRQPPDNHPKMYEETGCFDPNSMAEGGDDGISQSVKHHKEDDAAVSAIELELQKHLAFNVEDTHTQSISINSNTHSIHDPANQNHQILPPYEHSHSNWDSGVVSADHMGGFDQNENDQSQQSFINTDISSSFAQSQTPPLLNLLQFPRCTTSSMLPPNSSISFTNPDHHFPVPPPTSTDVLYDPLFHLNLPPQPQPPLFRELFQSIPHGYSFPASASRAAANSLFGEIGDERDATGAFYEDGDVGVHLDNRVLEFSRDLGCIGRRRETAGKPTKHFATERQRREQLNGKFKALKDLVPNPTKNDRASVVGDAIEYIKELLRTVNELKLLVEKKRCVRERRKRHRTEDDDEGMKPLVDPADQSYNSSLRSSWLQRKSKDTEVDVRIIDDEVTIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHIGDYYSFLFNTKIYEGSSVYAGSIANKLIEVMDKQYAAVPPTSCAY
cHHHHHHHHHHccccccEEEEccccEEEEEEEEEccHHHHHHHHHHcccccEEEHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccEEEEEEccEEEEEEEEEccccHHHHHHHHHHHcccEEEEEEEEEcccEEEEEEEEEEcccccccHHHHHHHHHHHHHHHHcccccccccc
ccHHHHHHHHHccccccEEEcccccEEHEHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHEEcccccccccHHccccccccccccccccccccccccHcccccHHHccccccccHcHHHHcccccccccccccHHcccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccEEEEEEEcccccHHHHHHHHHHHcccEEEEEEEEEEccEEEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHcccccccc
MRERERERErqrgsrsqtllllpdpiffINFFYLQNSRLLSLLNKIHPSLIFIHCFFLlqtdrrqppdnhpkmyeetgcfdpnsmaeggddgisqsvkhhkeddAAVSAIELELQKHLAfnvedthtqsisinsnthsihdpanqnhqilppyehshsnwdsgvvsadhmggfdqnendqsqqsfintdisssfaqsqtppllnllqfprcttssmlppnssisftnpdhhfpvppptstdvlydplfhlnlppqpqpplfRELFqsiphgysfpasaSRAAANSLFgeigderdatgafyedgdvgvhLDNRVLEFsrdlgcigrrretagkptkhfATERQRREQLNGKFKAlkdlvpnptkndrasVVGDAIEYIKELLRTVNELKLLVEKKRCVRERrkrhrtedddegmkplvdpadqsynsslrsswlqrkskdtevdvriiDDEVTIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHIGDYYSFLFNTkiyegssvyaGSIANKLIEVMDKqyaavpptscay
mrererererqrgsrsqtllllpdPIFFINFFYLQNSRLLSLLNKIHPSLIFIHCFFLLQTDRRQPPDNHPKMYEETGCFDPNSMAEGGDDGISQSVKHHKEDDAAVSAIELELQKHLAFNVEDTHTQSISINSNTHSIHDPANQNHQILPPYEHSHSNWDSGVVSADHMGGFDQNENDQSQQSFINTDISSSFAQSQTPPLLNLLQFPRCTTSSMLPPNSSISFTNPDHHFPVPPPTSTDVLYDPLFHLNLPPQPQPPLFRELFQSIPHGYSFPASASRAAANSLFGEIGDERDATGAFYEDGDVGVHLDNRVLEfsrdlgcigrrretagkptkhfaterqrreqLNGKfkalkdlvpnptkndrasvvGDAIEYIKELLRTVnelkllvekkrcvrerrkrhrtedddegmkplvdpadqsynsslrsswlqrkskdtevdvriiddevtiklvqrkkidCLLFVSRVLDELQLDLHHVAGGHIGDYYSFLFNTKIYEGSSVYAGSIANKLIEVMDKQYAAVPPTSCAY
MrererererqrgsrsqTLLLLPDPIFFINFFYLQNSRLLSLLNKIHPSLIFIHCFFLLQTDRRQPPDNHPKMYEETGCFDPNSMAEGGDDGISQSVKHHKEDDAAVSAIELELQKHLAFNVEDTHTQsisinsnthsihDPANQNHQILPPYEHSHSNWDSGVVSADHMGGFDQNENDQSQQSFINTDISSSFAQSQTPPLLNLLQFPRCTTSSMLPPNSSISFTNPDHHFPVPPPTSTDVLYDplfhlnlppqpqpplfrelfqSIPHGYSFPASASRAAANSLFGEIGDERDATGAFYEDGDVGVHLDNRVLEFSRDLGCIGRRRETAGKPTKHFATERQRREQLNGKFKALKDLVPNPTKNDRASVVGDAIEYIKELLRTVNELKLLVekkrcvrerrkrhrtedddeGMKPLVDPADQSYNSSLRSSWLQRKSKDTEVDVRIIDDEVTIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHIGDYYSFLFNTKIYEGSSVYAGSIANKLIEVMDKQYAAVPPTSCAY
*****************TLLLLPDPIFFINFFYLQNSRLLSLLNKIHPSLIFIHCFFLLQ*************************************************IELELQKHLAFNV*********************************************************************************NLLQF********************************DVLYDPLFHLNL*******LFRELFQSIPHGYSFP*******ANSLFGEIGDERDATGAFYEDGDVGVHLDNRVLEFSRDLGCIGR*****************************************ASVVGDAIEYIKELLRTVNELKLLVEKKRCV*******************************************EVDVRIIDDEVTIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHIGDYYSFLFNTKIYEGSSVYAGSIANKLIEVMDKQYAA********
*******************LLLPDPIFFINFFYLQNSRLLSLLNKIHPSLIFIHCFFLLQ********************************************************************************************************************************************************************************************************************************************************************************************REQLNGKFKALKDLVPNPTKNDRASVVGDAIEYIKELLR**********************************************************EVDVRIIDDEVTIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHIGDYYSFLFNTKIYEG**VYAGSIANKLIEVMDKQYAAVPPT****
***************SQTLLLLPDPIFFINFFYLQNSRLLSLLNKIHPSLIFIHCFFLLQTDRRQPPDNHPKMYEETGCFDPNSMAEGGDDGISQSVKHHKEDDAAVSAIELELQKHLAFNVEDTHTQSISINSNTHSIHDPANQNHQILPPYEHSHSNWDSGVVSADHMGGFDQNENDQSQQSFINTDISSSFAQSQTPPLLNLLQFPRCTTSSMLPPNSSISFTNPDHHFPVPPPTSTDVLYDPLFHLNLPPQPQPPLFRELFQSIPHGYSFPASASRAAANSLFGEIGDERDATGAFYEDGDVGVHLDNRVLEFSRDLGCIGRRRETAGKPTKHFATERQRREQLNGKFKALKDLVPNPTKNDRASVVGDAIEYIKELLRTVNELKLLVEKKRCVRE************GMKPLVDPADQSYNSSLRSSWLQRKSKDTEVDVRIIDDEVTIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHIGDYYSFLFNTKIYEGSSVYAGSIANKLIEVMDKQYAAVPPTSCAY
***************SQTLLLLPDPIFFINFFYLQNSRLLSLLNKIHPSLIFIHCFFLLQTDRRQPPDNHPKMYEETGCFDPNSMA********************VSAIE***QKHLAFNVEDTHTQSISINSNTHSIHDPANQNHQILPPYEHSHSNWDSGVVSADHMGGFDQNENDQSQQSFINTDISSSFAQSQTPPLLNLLQFPRCTTSSMLPPNSSISFTNPDHHFPVPPPTSTDVLYDPLFHLNLPPQPQPPLFRELFQSIPHGYSF************************************************************TK*FATERQRREQLNGKFKALKDLVPNPTKNDRASVVGDAIEYIKELLRTVNELKLLVE********************************************SKDTEVDVRIIDDEVTIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHIGDYYSFLFNTKIYEGSSVYAGSIANKLIEVMDKQYAAVPPTSCA*
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MRERERERERQRGSRSQTLLLLPDPIFFINFFYLQNSRLLSLLNKIHPSLIFIHCFFLLQTDRRQPPDNHPKMYEETGCFDPNSMAEGGDDGISQSVKHHKEDDAAVSAIELELQKHLAFNVEDTHTQSISINSNTHSIHDPANQNHQILPPYEHSHSNWDSGVVSADHMGGFDQNENDQSQQSFINTDISSSFAQSQTPPLLNLLQFPRCTTSSMLPPNSSISFTNPDHHFPVPPPTSTDVLYDPLFHLNLPPQPQPPLFRELFQSIPHGYSFPASASRAAANSLFGEIGDERDATGAFYEDGDVGVHLDNRVLEFSRDLGCIGRRRETAGKPTKHFATERQRREQLNGKFKALKDLVPNPTKNDRASVVGDAIEYIKELLRTVNELKLLVEKKRCVRERRKRHRTEDDDEGMKPLVDPADQSYNSSLRSSWLQRKSKDTEVDVRIIDDEVTIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHIGDYYSFLFNTKIYEGSSVYAGSIANKLIEVMDKQYAAVPPTSCAY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query532 2.2.26 [Sep-21-2011]
Q8GX46428 Transcription factor bHLH yes no 0.729 0.906 0.395 2e-75
Q9LND0420 Transcription factor bHLH no no 0.725 0.919 0.391 4e-74
Q84TK1458 Transcription factor bHLH no no 0.740 0.860 0.392 1e-71
Q9LPW3450 Transcription factor SCRE no no 0.257 0.304 0.312 2e-11
Q39204623 Transcription factor MYC2 no no 0.272 0.232 0.297 3e-11
Q9FIP9592 Transcription factor ATR2 no no 0.248 0.222 0.314 5e-11
O49687589 Transcription factor MYC4 no no 0.246 0.222 0.308 7e-11
Q9LNJ5590 Transcription factor bHLH no no 0.174 0.157 0.441 4e-10
Q9LSE2494 Transcription factor ICE1 no no 0.265 0.285 0.303 4e-10
Q9ZPY8566 Transcription factor ABA- no no 0.099 0.093 0.566 1e-09
>sp|Q8GX46|BH091_ARATH Transcription factor bHLH91 OS=Arabidopsis thaliana GN=BHLH91 PE=2 SV=1 Back     alignment and function desciption
 Score =  283 bits (724), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 196/495 (39%), Positives = 264/495 (53%), Gaps = 107/495 (21%)

Query: 73  MYEETGCFDPNSMAEGGDDGISQ---------------SVKHHKEDDAAVSAIELELQKH 117
           MYEE+ CFDPNSM +      +                S  +  +DD  +  ++      
Sbjct: 1   MYEESSCFDPNSMVDNNGGFCAAETTFTVSHQFQPPLGSTTNSFDDDLKLPTMDEFSVFP 60

Query: 118 LAFNVEDTHTQSISINSNTHSIHDPANQNHQILPPYEHSHSNWDSGVVSADHMGGFDQNE 177
              ++ ++ TQ+ +I++N H I    NQ  Q         SNW          G  + N 
Sbjct: 61  SVISLPNSETQNQNISNNNHLI----NQMIQ--------ESNW----------GVSEDNS 98

Query: 178 NDQSQQSFINTDISSSFAQSQTPPLLNLLQFPRCTTSSMLPPNSSISFTNPDHHFPVPPP 237
           N      F+NT   ++   +  P LL+LL  PRC   SM  P+S I              
Sbjct: 99  N-----FFMNTSHPNT-TTTPIPDLLSLLHLPRC---SMSLPSSDIM------------- 136

Query: 238 TSTDVLYDPLFHLNLPPQPQPPLFRELFQSIPHGYSFPASASRAAANSLFGEIGDERDAT 297
             +   YDPLFHLNLPPQP P +    +     G     +  R  +N     +GDE +  
Sbjct: 137 AGSCFTYDPLFHLNLPPQP-PLIPSNDYSGYLLGIDTNTTTQRDESN-----VGDENN-- 188

Query: 298 GAFYEDGDVGVHLDNRVLEFSRDLGCIGRRRETAGKPTKHFATERQRREQLNGKFKALKD 357
                        D+ ++EFS+++    RR+    +  K F TER+RR  LN +++ALK 
Sbjct: 189 ---------NAQFDSGIIEFSKEI----RRKGRGKRKNKPFTTERERRCHLNERYEALKL 235

Query: 358 LVPNPTKNDRASVVGDAIEYIKELLRTVNELKLLVEKKRCVRERRKRHRTEDDDEGM--- 414
           L+P+P+K DRAS++ D I+YI EL R V+ELK LVE+KRC      RH+  + D+     
Sbjct: 236 LIPSPSKGDRASILQDGIDYINELRRRVSELKYLVERKRC----GGRHKNNEVDDNNNNK 291

Query: 415 -------------------KPLVDPADQ-SYNSSLRSSWLQRKSKDTEVDVRIIDDEVTI 454
                              KP  D  DQ S N+SLR SWLQRKSK TEVDVRI+DDEVTI
Sbjct: 292 NLDDHGNEDDDDDDENMEKKPESDVIDQCSSNNSLRCSWLQRKSKVTEVDVRIVDDEVTI 351

Query: 455 KLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHIGDYYSFLFNTKIYEGSSVYAGSIANKL 514
           K+VQ+KKI+CLL VS+VLD+LQLDLHHVAGG IG++YSFLFNTKIYEGS++YA +IAN++
Sbjct: 352 KVVQKKKINCLLLVSKVLDQLQLDLHHVAGGQIGEHYSFLFNTKIYEGSTIYASAIANRV 411

Query: 515 IEVMDKQYAAVPPTS 529
           IEV+DK Y A  P S
Sbjct: 412 IEVVDKHYMASLPNS 426

Arabidopsis thaliana (taxid: 3702)
>sp|Q9LND0|BH089_ARATH Transcription factor bHLH89 OS=Arabidopsis thaliana GN=BHLH89 PE=2 SV=1 Back     alignment and function description
>sp|Q84TK1|BH010_ARATH Transcription factor bHLH10 OS=Arabidopsis thaliana GN=BHLH10 PE=2 SV=1 Back     alignment and function description
>sp|Q9LPW3|SCRM2_ARATH Transcription factor SCREAM2 OS=Arabidopsis thaliana GN=SCRM2 PE=1 SV=1 Back     alignment and function description
>sp|Q39204|RAP1_ARATH Transcription factor MYC2 OS=Arabidopsis thaliana GN=RAP1 PE=1 SV=2 Back     alignment and function description
>sp|Q9FIP9|ATR2_ARATH Transcription factor ATR2 OS=Arabidopsis thaliana GN=ATR2 PE=1 SV=1 Back     alignment and function description
>sp|O49687|BH004_ARATH Transcription factor MYC4 OS=Arabidopsis thaliana GN=BHLH4 PE=2 SV=1 Back     alignment and function description
>sp|Q9LNJ5|BH013_ARATH Transcription factor bHLH13 OS=Arabidopsis thaliana GN=BHLH13 PE=2 SV=1 Back     alignment and function description
>sp|Q9LSE2|ICE1_ARATH Transcription factor ICE1 OS=Arabidopsis thaliana GN=SCRM PE=1 SV=1 Back     alignment and function description
>sp|Q9ZPY8|AIB_ARATH Transcription factor ABA-INDUCIBLE bHLH-TYPE OS=Arabidopsis thaliana GN=AIB PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query532
147798863456 hypothetical protein VITISV_003899 [Viti 0.789 0.921 0.591 1e-132
359489179568 PREDICTED: transcription factor bHLH91-l 0.789 0.739 0.581 1e-129
255587680469 Transcription factor ICE1, putative [Ric 0.810 0.918 0.551 1e-128
296088763433 unnamed protein product [Vitis vinifera] 0.727 0.893 0.526 1e-113
224140002467 predicted protein [Populus trichocarpa] 0.787 0.897 0.503 1e-112
224088110463 predicted protein [Populus trichocarpa] 0.781 0.898 0.500 1e-109
449442461480 PREDICTED: transcription factor bHLH91-l 0.795 0.881 0.479 1e-103
449533176412 PREDICTED: transcription factor bHLH91-l 0.667 0.861 0.557 1e-103
356510818463 PREDICTED: LOW QUALITY PROTEIN: transcri 0.772 0.887 0.462 1e-99
358348546486 Transcription factor bHLH91 [Medicago tr 0.795 0.870 0.449 1e-96
>gi|147798863|emb|CAN77001.1| hypothetical protein VITISV_003899 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  479 bits (1234), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 280/473 (59%), Positives = 329/473 (69%), Gaps = 53/473 (11%)

Query: 73  MYEETGCFD-PNSMAEGGDDGISQSV-----KHHKEDDA--------AVSAIELELQKHL 118
           MYEE  CFD   S+AEG D+G SQSV      +  ED          A + +E+EL + L
Sbjct: 3   MYEENACFDGTKSVAEGDDEGFSQSVAPPPTNNSFEDSTNMRVSMEDASATMEIELHQQL 62

Query: 119 AFNVEDTHTQSISINSNTHSIHDPANQNHQILPPYEHSHSNWDSGVVSADHMGGFDQNEN 178
           AF+++     S +  ++++ +     Q       + H H   D  ++   H     Q E 
Sbjct: 63  AFDMDQQCYNSNNDGNDSNQVFSYEMQEMG----FNHHHQQQDDPLLLQQH-----QAEM 113

Query: 179 DQSQQSFINTDISSSFAQSQTPPLLNLLQFPRCTTSSMLPPNSSISFTNPDHHFPVPPPT 238
             +QQ+F       S A   TP LLNL   PRCT SS+LP NSSISFTNPD         
Sbjct: 114 QNAQQNF-------SAAYPPTPDLLNLFHLPRCTPSSLLP-NSSISFTNPDS----SATA 161

Query: 239 STDVLYDPLFHLNLPPQPQPPLFRELFQSIPHGYSFPASASRAAANSLFGEIGDERDATG 298
           ++ +LYDPLFHLNLPPQP  P+FRELFQS+PHGY+ PAS       SLFG   DER+A+G
Sbjct: 162 ASGILYDPLFHLNLPPQP--PVFRELFQSLPHGYNLPASR----VGSLFGGGMDEREASG 215

Query: 299 AFYEDGDVGVHLDNRVLEFSRDLGCIGRRRETAGKPTKHFATERQRREQLNGKFKALKDL 358
             Y DGD     DN VL+F+RD+ CIGR RE  GK TK FATE+QRRE LN K+ AL+ L
Sbjct: 216 GGYGDGDDHRQFDNGVLKFTRDMACIGRGRE--GKGTKSFATEKQRREHLNDKYNALRSL 273

Query: 359 VPNPTKNDRASVVGDAIEYIKELLRTVNELKLLVEKKRCVRERRKRHRTEDDDEG----- 413
           VPNPTK+DRASVVGDAIEYI+ELLRTVNELKLLVEKKRC RER KRH+TED+  G     
Sbjct: 274 VPNPTKSDRASVVGDAIEYIRELLRTVNELKLLVEKKRCGRERSKRHKTEDESTGDVKSS 333

Query: 414 --MKPLVDPADQSYNSSLRSSWLQRKSKDTEVDVRIIDDEVTIKLVQRKKIDCLLFVSRV 471
             +KP  +P DQSYN SLRSSWLQRKSKDTEVDVRIIDDEVTIKLVQRKKI+CLLFVS++
Sbjct: 334 SSIKP--EP-DQSYNESLRSSWLQRKSKDTEVDVRIIDDEVTIKLVQRKKINCLLFVSKI 390

Query: 472 LDELQLDLHHVAGGHIGDYYSFLFNTKIYEGSSVYAGSIANKLIEVMDKQYAA 524
           LDELQLDLHHVAGGH+GDYYSFLFNTKIYEGSSVYA +IANKLIEV+D+QYAA
Sbjct: 391 LDELQLDLHHVAGGHVGDYYSFLFNTKIYEGSSVYASAIANKLIEVVDRQYAA 443

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359489179|ref|XP_002265098.2| PREDICTED: transcription factor bHLH91-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|255587680|ref|XP_002534354.1| Transcription factor ICE1, putative [Ricinus communis] gi|223525438|gb|EEF28027.1| Transcription factor ICE1, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|296088763|emb|CBI38213.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224140002|ref|XP_002323376.1| predicted protein [Populus trichocarpa] gi|222868006|gb|EEF05137.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224088110|ref|XP_002308327.1| predicted protein [Populus trichocarpa] gi|222854303|gb|EEE91850.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449442461|ref|XP_004139000.1| PREDICTED: transcription factor bHLH91-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449533176|ref|XP_004173553.1| PREDICTED: transcription factor bHLH91-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356510818|ref|XP_003524131.1| PREDICTED: LOW QUALITY PROTEIN: transcription factor bHLH91-like [Glycine max] Back     alignment and taxonomy information
>gi|358348546|ref|XP_003638306.1| Transcription factor bHLH91 [Medicago truncatula] gi|355504241|gb|AES85444.1| Transcription factor bHLH91 [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query532
TAIR|locus:2042556428 AT2G31210 "AT2G31210" [Arabido 0.216 0.268 0.732 2.8e-67
TAIR|locus:2042486458 AT2G31220 "AT2G31220" [Arabido 0.398 0.462 0.532 3.7e-62
TAIR|locus:2038510420 AT1G06170 "AT1G06170" [Arabido 0.368 0.466 0.555 4.2e-59
UNIPROTKB|Q7X8R0464 OSJNBa0083N12.3 "OSJNBa0083N12 0.434 0.497 0.481 2.9e-56
UNIPROTKB|Q5JNS0379 P0706B05.43 "Os01g0293100 prot 0.172 0.242 0.532 2e-35
TAIR|locus:504956068129 AT2G31215 "AT2G31215" [Arabido 0.112 0.465 0.55 1.3e-10
TAIR|locus:2090847494 ICE1 "AT3G26744" [Arabidopsis 0.394 0.425 0.257 2.8e-09
TAIR|locus:2142419315 AT5G10570 "AT5G10570" [Arabido 0.116 0.196 0.451 1.3e-08
TAIR|locus:2035237590 AT1G01260 "AT1G01260" [Arabido 0.174 0.157 0.441 1.7e-08
UNIPROTKB|Q2R3F6524 Os11g0523700 "Helix-loop-helix 0.109 0.110 0.5 3.1e-08
TAIR|locus:2042556 AT2G31210 "AT2G31210" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 430 (156.4 bits), Expect = 2.8e-67, Sum P(3) = 2.8e-67
 Identities = 85/116 (73%), Positives = 100/116 (86%)

Query:   415 KPLVDPADQ-SYNSSLRSSWLQRKSKDTEVDVRIIDDEVTIKLVQRKKIDCLLFVSRVLD 473
             KP  D  DQ S N+SLR SWLQRKSK TEVDVRI+DDEVTIK+VQ+KKI+CLL VS+VLD
Sbjct:   311 KPESDVIDQCSSNNSLRCSWLQRKSKVTEVDVRIVDDEVTIKVVQKKKINCLLLVSKVLD 370

Query:   474 ELQLDLHHVAGGHIGDYYSFLFNTKIYEGSSVYAGSIANKLIEVMDKQYAAVPPTS 529
             +LQLDLHHVAGG IG++YSFLFNTKIYEGS++YA +IAN++IEV+DK Y A  P S
Sbjct:   371 QLQLDLHHVAGGQIGEHYSFLFNTKIYEGSTIYASAIANRVIEVVDKHYMASLPNS 426
GO:0003677 "DNA binding" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS
TAIR|locus:2042486 AT2G31220 "AT2G31220" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2038510 AT1G06170 "AT1G06170" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q7X8R0 OSJNBa0083N12.3 "OSJNBa0083N12.3 protein" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q5JNS0 P0706B05.43 "Os01g0293100 protein" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:504956068 AT2G31215 "AT2G31215" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2090847 ICE1 "AT3G26744" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2142419 AT5G10570 "AT5G10570" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2035237 AT1G01260 "AT1G01260" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q2R3F6 Os11g0523700 "Helix-loop-helix DNA-binding domain containing protein, expressed" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query532
cd0008360 cd00083, HLH, Helix-loop-helix domain, found in sp 2e-11
pfam0001052 pfam00010, HLH, Helix-loop-helix DNA-binding domai 1e-10
smart0035353 smart00353, HLH, helix loop helix domain 1e-09
>gnl|CDD|238036 cd00083, HLH, Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long Back     alignment and domain information 
 Score = 59.1 bits (144), Expect = 2e-11
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 333 KPTKHFATERQRREQLNGKFKALKDLVPNP---TKNDRASVVGDAIEYIKELLRTV 385
           +   H   ER+RRE++N  F  L+ L+P      K  +A ++  A++YIK L   +
Sbjct: 4   RREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELL 59

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and have a PAS domain which allows the dimerization between PAS proteins, the binding of small molecules (e.g., dioxin), and interactions with non-PAS proteins. Length = 60
>gnl|CDD|215654 pfam00010, HLH, Helix-loop-helix DNA-binding domain Back     alignment and domain information
>gnl|CDD|197674 smart00353, HLH, helix loop helix domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 532
cd0008360 HLH Helix-loop-helix domain, found in specific DNA 99.19
smart0035353 HLH helix loop helix domain. 99.17
PF0001055 HLH: Helix-loop-helix DNA-binding domain only nucl 99.15
KOG1318411 consensus Helix loop helix transcription factor EB 98.77
KOG1319229 consensus bHLHZip transcription factor BIGMAX [Tra 98.28
cd0489775 ACT_ACR_3 ACT domain-containing protein which is c 98.15
cd0489572 ACT_ACR_1 ACT domain-containing protein which is c 98.08
cd0490073 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, 97.92
KOG4304250 consensus Transcriptional repressors of the hairy/ 97.87
KOG2483232 consensus Upstream transcription factor 2/L-myc-2 97.84
cd0489675 ACT_ACR-like_3 ACT domain-containing protein which 97.81
cd0492776 ACT_ACR-like_2 Second ACT domain, of a novel type 97.81
KOG3561 803 consensus Aryl-hydrocarbon receptor nuclear transl 97.72
cd0492574 ACT_ACR_2 ACT domain-containing protein which is c 97.67
KOG2588 953 consensus Predicted DNA-binding protein [Transcrip 97.58
cd0489970 ACT_ACR-UUR-like_2 C-terminal ACT domains of the b 97.36
cd0492672 ACT_ACR_4 C-terminal ACT domain, of a novel type o 97.23
cd0492868 ACT_TyrKc Uncharacterized, N-terminal ACT domain o 97.22
cd0487370 ACT_UUR-ACR-like ACT domains of the bacterial sign 96.92
PRK05007884 PII uridylyl-transferase; Provisional 96.81
PLN0321793 transcription factor ATBS1; Provisional 96.73
PF1374076 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A. 96.73
KOG0561 373 consensus bHLH transcription factor [Transcription 96.69
KOG3960284 consensus Myogenic helix-loop-helix transcription 96.57
KOG4029228 consensus Transcription factor HAND2/Transcription 96.54
cd0489377 ACT_GcvR_1 ACT domains that comprise the Glycine C 96.51
PF0184266 ACT: ACT domain; InterPro: IPR002912 The ACT domai 96.3
PRK00275895 glnD PII uridylyl-transferase; Provisional 96.23
cd0486981 ACT_GcvR_2 ACT domains that comprise the Glycine C 96.15
PRK01759854 glnD PII uridylyl-transferase; Provisional 96.15
PRK04374869 PII uridylyl-transferase; Provisional 96.09
PRK0019490 hypothetical protein; Validated 96.04
PRK03381774 PII uridylyl-transferase; Provisional 95.9
cd0487075 ACT_PSP_1 CT domains found N-terminal of phosphose 95.9
PRK05092931 PII uridylyl-transferase; Provisional 95.88
PF1329180 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A. 95.88
cd0487288 ACT_1ZPV ACT domain proteins similar to the yet un 95.85
cd0487574 ACT_F4HF-DF N-terminal ACT domain of formyltetrahy 95.75
PRK03381774 PII uridylyl-transferase; Provisional 95.73
TIGR01693850 UTase_glnD [Protein-PII] uridylyltransferase. This 95.46
TIGR01693850 UTase_glnD [Protein-PII] uridylyltransferase. This 95.32
COG2844867 GlnD UTP:GlnB (protein PII) uridylyltransferase [P 95.14
PRK05007884 PII uridylyl-transferase; Provisional 95.09
PRK01759854 glnD PII uridylyl-transferase; Provisional 94.99
cd0488774 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te 94.95
PRK03059856 PII uridylyl-transferase; Provisional 94.74
cd0488673 ACT_ThrD-II-like C-terminal ACT domain of biodegra 94.54
PRK05092 931 PII uridylyl-transferase; Provisional 94.07
cd0488876 ACT_PheB-BS C-terminal ACT domain of a small (~147 93.98
KOG3910632 consensus Helix loop helix transcription factor [T 93.8
PRK03059856 PII uridylyl-transferase; Provisional 93.63
cd0489469 ACT_ACR-like_1 ACT domain-containing protein which 93.54
PRK00275 895 glnD PII uridylyl-transferase; Provisional 93.2
PRK04435147 hypothetical protein; Provisional 92.97
cd0487671 ACT_RelA-SpoT ACT domain found C-terminal of the R 92.96
cd0211660 ACT ACT domains are commonly involved in specifica 92.48
cd0487774 ACT_TyrR N-terminal ACT domain of the TyrR protein 92.1
PRK13011 286 formyltetrahydrofolate deformylase; Reviewed 91.77
cd0488179 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin 91.69
PRK04374869 PII uridylyl-transferase; Provisional 91.48
PRK06027 286 purU formyltetrahydrofolate deformylase; Reviewed 91.03
cd0488075 ACT_AAAH-PDT-like ACT domain of the nonheme iron-d 90.98
cd0490580 ACT_CM-PDT C-terminal ACT domain of the bifunction 90.59
cd0487472 ACT_Af1403 N-terminal ACT domain of the yet unchar 90.44
cd0487872 ACT_AHAS N-terminal ACT domain of the Escherichia 90.31
PRK13010 289 purU formyltetrahydrofolate deformylase; Reviewed 90.12
KOG3560 712 consensus Aryl-hydrocarbon receptor [Transcription 90.05
PRK08577136 hypothetical protein; Provisional 89.58
cd0487971 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te 89.58
TIGR00655 280 PurU formyltetrahydrofolate deformylase. This mode 89.51
cd0490371 ACT_LSD C-terminal ACT domain of the L-serine dehy 88.88
cd0490969 ACT_PDH-BS C-terminal ACT domain of the monofuncti 88.3
cd0488372 ACT_AcuB C-terminal ACT domain of the Bacillus sub 88.22
PRK07334403 threonine dehydratase; Provisional 88.07
cd0488472 ACT_CBS C-terminal ACT domain of the cystathionine 87.5
cd0488265 ACT_Bt0572_2 C-terminal ACT domain of a novel prot 87.22
cd0490866 ACT_Bt0572_1 N-terminal ACT domain of a novel prot 86.69
KOG3558 768 consensus Hypoxia-inducible factor 1/Neuronal PAS 85.39
KOG4447173 consensus Transcription factor TWIST [Transcriptio 85.39
KOG3559 598 consensus Transcriptional regulator SIM1 [Transcri 85.21
PRK11589 190 gcvR glycine cleavage system transcriptional repre 85.13
cd0493190 ACT_PAH ACT domain of the nonheme iron-dependent a 82.67
cd0488956 ACT_PDH-BS-like C-terminal ACT domain of the monof 82.47
cd0490474 ACT_AAAH ACT domain of the nonheme iron-dependent, 82.37
COG383090 ACT domain-containing protein [Signal transduction 81.97
COG4492150 PheB ACT domain-containing protein [General functi 80.49
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long Back     alignment and domain information 
Probab=99.19  E-value=1.5e-11  Score=95.91  Aligned_cols=53  Identities=34%  Similarity=0.610  Sum_probs=50.3

Q ss_pred             CCCcchhhHHHHHHHHHHHHHHhhccCCCC---CCCCccchHHHHHHHHHHHHHHH
Q 009555          333 KPTKHFATERQRREQLNGKFKALKDLVPNP---TKNDRASVVGDAIEYIKELLRTV  385 (532)
Q Consensus       333 ~~~~H~~aER~RR~klnekf~~LrsLvP~~---~K~DKaSIL~dAI~YIk~Lq~~v  385 (532)
                      ++..|+..||+||++||+.|..|+.+||..   .|+||++||..||+||+.|+.++
T Consensus         4 ~r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~   59 (60)
T cd00083           4 RREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELL   59 (60)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence            567899999999999999999999999988   89999999999999999999876

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
>smart00353 HLH helix loop helix domain Back     alignment and domain information
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt) Back     alignment and domain information
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription] Back     alignment and domain information
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription] Back     alignment and domain information
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains Back     alignment and domain information
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription] Back     alignment and domain information
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription] Back     alignment and domain information
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription] Back     alignment and domain information
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>KOG2588 consensus Predicted DNA-binding protein [Transcription] Back     alignment and domain information
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains Back     alignment and domain information
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains Back     alignment and domain information
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD Back     alignment and domain information
>PRK05007 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PLN03217 transcription factor ATBS1; Provisional Back     alignment and domain information
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A Back     alignment and domain information
>KOG0561 consensus bHLH transcription factor [Transcription] Back     alignment and domain information
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription] Back     alignment and domain information
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription] Back     alignment and domain information
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains Back     alignment and domain information
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold Back     alignment and domain information
>PRK00275 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains Back     alignment and domain information
>PRK01759 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK04374 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK00194 hypothetical protein; Validated Back     alignment and domain information
>PRK03381 PII uridylyl-transferase; Provisional Back     alignment and domain information
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB) Back     alignment and domain information
>PRK05092 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A Back     alignment and domain information
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein Back     alignment and domain information
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) Back     alignment and domain information
>PRK03381 PII uridylyl-transferase; Provisional Back     alignment and domain information
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase Back     alignment and domain information
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase Back     alignment and domain information
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK05007 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK01759 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains Back     alignment and domain information
>PRK03059 PII uridylyl-transferase; Provisional Back     alignment and domain information
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains Back     alignment and domain information
>PRK05092 PII uridylyl-transferase; Provisional Back     alignment and domain information
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a Back     alignment and domain information
>KOG3910 consensus Helix loop helix transcription factor [Transcription] Back     alignment and domain information
>PRK03059 PII uridylyl-transferase; Provisional Back     alignment and domain information
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>PRK00275 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK04435 hypothetical protein; Provisional Back     alignment and domain information
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains Back     alignment and domain information
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme Back     alignment and domain information
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein Back     alignment and domain information
>PRK13011 formyltetrahydrofolate deformylase; Reviewed Back     alignment and domain information
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains Back     alignment and domain information
>PRK04374 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed Back     alignment and domain information
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH) Back     alignment and domain information
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme Back     alignment and domain information
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a Back     alignment and domain information
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS) Back     alignment and domain information
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed Back     alignment and domain information
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription] Back     alignment and domain information
>PRK08577 hypothetical protein; Provisional Back     alignment and domain information
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH) Back     alignment and domain information
>TIGR00655 PurU formyltetrahydrofolate deformylase Back     alignment and domain information
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit Back     alignment and domain information
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) Back     alignment and domain information
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB Back     alignment and domain information
>PRK07334 threonine dehydratase; Provisional Back     alignment and domain information
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria Back     alignment and domain information
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains Back     alignment and domain information
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains Back     alignment and domain information
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription] Back     alignment and domain information
>KOG4447 consensus Transcription factor TWIST [Transcription] Back     alignment and domain information
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription] Back     alignment and domain information
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional Back     alignment and domain information
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH) Back     alignment and domain information
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate Back     alignment and domain information
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH) Back     alignment and domain information
>COG3830 ACT domain-containing protein [Signal transduction mechanisms] Back     alignment and domain information
>COG4492 PheB ACT domain-containing protein [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query532
1nkp_A88 C-MYC, MYC proto-oncogene protein; transcription, 3e-12
1am9_A82 Srebp-1A, protein (sterol regulatory element bindi 5e-12
1nkp_B83 MAX protein, MYC proto-oncogene protein; transcrip 1e-11
1hlo_A80 Protein (transcription factor MAX); transcriptiona 2e-10
1an4_A65 Protein (upstream stimulatory factor); protein-DNA 7e-09
1nlw_A80 MAD protein, MAX dimerizer; transcription factor, 2e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-04
1a0a_A63 BHLH, protein (phosphate system positive regulator 4e-05
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 Length = 88 Back     alignment and structure
 Score = 61.6 bits (150), Expect = 3e-12
 Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 4/80 (5%)

Query: 329 ETAGKPTKHFATERQRREQLNGKFKALKDLVP---NPTKNDRASVVGDAIEYIKELLRTV 385
               K   H   ERQRR +L   F AL+D +P   N  K  +  ++  A  YI  +    
Sbjct: 2   HMNVKRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEE 61

Query: 386 NELKLLVEK-KRCVRERRKR 404
            +L    +  ++   + + +
Sbjct: 62  QKLISEEDLLRKRREQLKHK 81
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C Length = 82 Back     alignment and structure
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B Length = 83 Back     alignment and structure
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1 Length = 80 Back     alignment and structure
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1 Length = 65 Back     alignment and structure
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1 Length = 80 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1 Length = 63 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query532
1am9_A82 Srebp-1A, protein (sterol regulatory element bindi 99.53
1nkp_B83 MAX protein, MYC proto-oncogene protein; transcrip 99.39
1hlo_A80 Protein (transcription factor MAX); transcriptiona 99.39
1an4_A65 Protein (upstream stimulatory factor); protein-DNA 99.37
1a0a_A63 BHLH, protein (phosphate system positive regulator 99.35
4ati_A118 MITF, microphthalmia-associated transcription fact 99.34
1nkp_A88 C-MYC, MYC proto-oncogene protein; transcription, 99.33
4h10_B71 Circadian locomoter output cycles protein kaput; B 99.32
1nlw_A80 MAD protein, MAX dimerizer; transcription factor, 99.27
4h10_A73 ARYL hydrocarbon receptor nuclear translocator-LI 99.21
3u5v_A76 Protein MAX, transcription factor E2-alpha chimer; 99.14
2ql2_B60 Neurod1, neurogenic differentiation factor 1; basi 98.8
1mdy_A68 Protein (MYOD BHLH domain); protein-DNA complex, t 98.79
4f3l_A 361 Mclock, circadian locomoter output cycles protein 98.72
4f3l_B 387 BMAL1B; BHLH, PAS, circadian rhythm proteins, tran 98.49
2lfh_A68 DNA-binding protein inhibitor ID-3; structural gen 98.27
4ath_A83 MITF, microphthalmia-associated transcription fact 98.21
4aya_A97 DNA-binding protein inhibitor ID-2; cell cycle; 2. 97.39
1zpv_A91 ACT domain protein; structural genomics, PSI, prot 96.98
1u8s_A 192 Glycine cleavage system transcriptional repressor, 96.0
2nyi_A195 Unknown protein; protein structure initiative, PSI 95.14
1u8s_A192 Glycine cleavage system transcriptional repressor, 95.1
2nyi_A 195 Unknown protein; protein structure initiative, PSI 94.95
2ko1_A88 CTR148A, GTP pyrophosphokinase; homodimer, alpha+b 94.65
3o1l_A 302 Formyltetrahydrofolate deformylase; structural gen 89.97
3n0v_A 286 Formyltetrahydrofolate deformylase; formyl transfe 89.84
3p96_A 415 Phosphoserine phosphatase SERB; ssgcid, structural 89.82
2jhe_A 190 Transcription regulator TYRR; aromatic hydrocarbon 89.42
3obi_A 288 Formyltetrahydrofolate deformylase; structural gen 89.28
3lou_A 292 Formyltetrahydrofolate deformylase; structural gen 87.53
2f1f_A164 Acetolactate synthase isozyme III small subunit; f 85.64
2pc6_A165 Probable acetolactate synthase isozyme III (small; 82.72
3nrb_A 287 Formyltetrahydrofolate deformylase; N-terminal ACT 82.31
1y7p_A 223 Hypothetical protein AF1403; structural genomics, 80.43
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C Back     alignment and structure
Probab=99.53  E-value=6.8e-15  Score=123.25  Aligned_cols=67  Identities=34%  Similarity=0.407  Sum_probs=62.6

Q ss_pred             CCCcchhhHHHHHHHHHHHHHHhhccCCCC-CCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 009555          333 KPTKHFATERQRREQLNGKFKALKDLVPNP-TKNDRASVVGDAIEYIKELLRTVNELKLLVEKKRCVR  399 (532)
Q Consensus       333 ~~~~H~~aER~RR~klnekf~~LrsLvP~~-~K~DKaSIL~dAI~YIk~Lq~~v~~L~~~~e~~r~~~  399 (532)
                      ++..|+.+||+||++||+.|.+|++|||.. .|+||++||.+||+||++|+.+++.|+.+.+.++...
T Consensus         6 rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~   73 (82)
T 1am9_A            6 KRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAV   73 (82)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567899999999999999999999999987 8999999999999999999999999999988776654
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B Back     alignment and structure
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1 Back     alignment and structure
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A Back     alignment and structure
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens} Back     alignment and structure
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens} Back     alignment and structure
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A* Back     alignment and structure
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus} Back     alignment and structure
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B* Back     alignment and structure
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Back     alignment and structure
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Back     alignment and structure
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Back     alignment and structure
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus} Back     alignment and structure
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens} Back     alignment and structure
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7 Back     alignment and structure
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5 Back     alignment and structure
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria} Back     alignment and structure
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5 Back     alignment and structure
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria} Back     alignment and structure
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A Back     alignment and structure
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV} Back     alignment and structure
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida} Back     alignment and structure
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium} Back     alignment and structure
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli} Back     alignment and structure
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris} Back     alignment and structure
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei} Back     alignment and structure
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6 Back     alignment and structure
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6 Back     alignment and structure
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida} Back     alignment and structure
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 532
d1uklc_61 a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId 4e-13
d1nkpb_83 a.38.1.1 (B:) Max protein {Human (Homo sapiens) [T 2e-12
d1mdya_68 a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus muscul 3e-12
d1nkpa_88 a.38.1.1 (A:) Myc proto-oncogene protein {Human (H 7e-12
d1am9a_80 a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxI 8e-12
d1nlwa_79 a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [T 2e-11
d1a0aa_63 a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Sa 3e-11
d1an4a_65 a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapien 2e-10
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 61 Back     information, alignment and structure

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.1 bits (151), Expect = 4e-13
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 345 REQLNGKFKALKDLVPNPT-KNDRASVVGDAIEYIKELLRTVNELKLLVEKKRCVRERRK 403
           R  +N K   LKDLV     K  ++ V+  AI+YIK L +  ++L+      +   ++ K
Sbjct: 1   RSSINDKIIELKDLVMGTDAKMHKSGVLRKAIDYIKYLQQVNHKLRQENMVLKLANQKNK 60
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]} Length = 83 Back     information, alignment and structure
>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 68 Back     information, alignment and structure
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88 Back     information, alignment and structure
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} Length = 80 Back     information, alignment and structure
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]} Length = 79 Back     information, alignment and structure
>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 63 Back     information, alignment and structure
>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query532
d1am9a_80 SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} 99.41
d1nlwa_79 Mad protein {Human (Homo sapiens) [TaxId: 9606]} 99.39
d1a0aa_63 Pho4 B/HLH domain {Baker's yeast (Saccharomyces ce 99.37
d1nkpb_83 Max protein {Human (Homo sapiens) [TaxId: 9606]} 99.34
d1nkpa_88 Myc proto-oncogene protein {Human (Homo sapiens) [ 99.33
d1mdya_68 Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10 99.27
d1uklc_61 SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} 99.25
d1an4a_65 Usf B/HLH domain {Human (Homo sapiens) [TaxId: 960 99.2
d1zpva183 UPF0237 protein SP0238 {Streptococcus pneumoniae [ 96.9
d1u8sa186 putative transcriptional repressor VC2159 {Vibrio 96.62
d1u8sa293 putative transcriptional repressor VC2159 {Vibrio 95.79
d1y7pa277 Hypothetical protein AF1403, N-terminal domain {Ar 92.98
d2f06a171 Hypothetical protein BT0572 {Bacteroides thetaiota 90.32
d2f06a270 Hypothetical protein BT0572 {Bacteroides thetaiota 86.63
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=3.9e-14  Score=115.77  Aligned_cols=68  Identities=34%  Similarity=0.397  Sum_probs=61.3

Q ss_pred             CCCCcchhhHHHHHHHHHHHHHHhhccCCCC-CCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 009555          332 GKPTKHFATERQRREQLNGKFKALKDLVPNP-TKNDRASVVGDAIEYIKELLRTVNELKLLVEKKRCVR  399 (532)
Q Consensus       332 s~~~~H~~aER~RR~klnekf~~LrsLvP~~-~K~DKaSIL~dAI~YIk~Lq~~v~~L~~~~e~~r~~~  399 (532)
                      .++..|+.+||+||++||+.|..|++|||.. .|++|++||..||+||+.|+.+++.|+.+.+.++...
T Consensus         5 ~kR~~H~~~Er~RR~~in~~~~~L~~llP~~~~k~~K~~iL~~a~~yI~~L~~~~~~L~~e~~~lk~~~   73 (80)
T d1am9a_           5 EKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAV   73 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3567899999999999999999999999986 6899999999999999999999999998887765543
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure