Citrus Sinensis ID: 009583


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-
MGESTCLMQMQVQQPFSYVSGFPNEAKEEGNPIHALGQSVSFGRFMSESLAWEKWSSFSSHNKYVEEAERYSRPGSVAQKKAFFEAHYKELAARKKAAALLEQAQDASNNNLAGESQPEGEVENVTAQDSQTIAVEEQEAATILVHESESNSVLGQRSVDGEKETENCEKTKSTNQLERVVVVDSKREAKDSKLSGANQMQKPRLKSSNSNQDDRASMSKKKPSFSSSKSLNFGRATKTPSTPAKPTAPLQSTKEINATPIKKKSAIDFADNKRSTPKSIHKSIYLTPAREINRLTSTIVRKIDGSKVMGSNSKASKDCSTPLMTPTAASVNGAPKHPLATPWSENRRDGTPHDSNMGSKTVRARWNFLPTENKLQSPNSFTPFRLRTEERAARRKEKLEEKFNANQIQKLQKQVTLKEKAETEIRKLRQTLCFKARPLPHFYKERAIPKSQMNKDPPTRPQSPKLTASTFQTKPSTPRQRPPTKHIGSDHVLEKKSHASTRSLASRPTKITHENKSPNIQHEYQSTKCRI
cccccEEEEEEcccccccccccccccccccccccccccEEEccccccccccccccccccccccHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
ccccEEEEEEEcccccccccccccccccccccccccccEEEccccccccccccccccccccccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHccccccccccccEEcccccccEEEEccccccccccccccccccccccccccccccccEEEEEcccccEcccccccccccccccccccccccccccccEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcc
mgestclmqmqvqqpfsyvsgfpneakeegnpihalgqsvsfgRFMSESLAWEKWSSFSSHNKYVEeaerysrpgsvaqKKAFFEAHYKELAARKKAAALLEQAQDasnnnlagesqpegevenvtaqdsQTIAVEEQEAATILVHEsesnsvlgqrsvdgeketencektkstnqlERVVVVDSkreakdsklsganqmqkprlkssnsnqddrasmskkkpsfssskslnfgratktpstpakptaplqstkeinatpikkksaidfadnkrstpksihksiyltpareiNRLTSTIVRkidgskvmgsnskaskdcstplmtptaasvngapkhplatpwsenrrdgtphdsnmgsktVRARWnflptenklqspnsftpfrLRTEERAARRKEKLEEKFNANQIQKLQKQVTLKEKAETEIRKLRQTLCfkarplphfykeraipksqmnkdpptrpqspkltastfqtkpstprqrpptkhigsdhvlekkshastrslasrptkithenkspniqheyqstkcri
mgestclmqmqvqQPFSYVSGFPNEAKEEGNPIHALGQSVSFGRFMSESLAWEKWSSFSSHNKYVEEAErysrpgsvaQKKAFFEAHYKELAARKKAAALLEQAQDASNNNLAGESQPEGEVENVTAQDSQTIAVEEQEAATIlvhesesnsvlgqrsvdgeketencektkstnqlervvvvdskreakdsklsganqmqkprlkssnsnqddrasmskkkpsfssskslnfgratktpstpakptaplqstkeinatpikkksaidfadnkrstpksihksiyltpareinrltstivrkidgskvmgsnskaskdcstPLMTptaasvngapkhplatpwsenrrdgtphdsnmgskTVRARWNFLptenklqspnsftpfrlRTEERAARRKEkleekfnanqiqklqkqvtlkEKAETEIRKLrqtlcfkarplphFYKEraipksqmnkdpptrpqspkltastfqtkpstprqrpptkhigsdhvlekkshastrslasrptkithenkspniqheyqstkcri
MGESTCLMQMQVQQPFSYVSGFPNEAKEEGNPIHALGQSVSFGRFMSESLAWEKWSSFSSHNKYVEEAERYSRPGSVAQKKAFFEAHYkelaarkkaaalleqaqdaSNNNLAGESQPEGEVENVTAQDSQTIAVEEQEAATILVHESESNSVLGQRSVDGEKETENCEKTKSTNQLERVVVVDSKREAKDSKLSGANQMQKPRLKSSNSNQDDRAsmskkkpsfsssksLNFGRatktpstpakptapLQSTKEINATPIKKKSAIDFADNKRSTPKSIHKSIYLTPAREINRLTSTIVRKIDGSKVMGSNSKASKDCSTPLMTPTAASVNGAPKHPLATPWSENRRDGTPHDSNMGSKTVRARWNFLPTENKLQSPNSFTPFrlrteeraarrkekleekFNANQIQKLQKQVTLKEKAETEIRKLRQTLCFKARPLPHFYKERAIPKSQMNKDPPTRPQSPKLTASTFQTKPSTPRQRPPTKHIGSDHVLEKKSHASTRSLASRPTKITHENKSPNIQHEYQSTKCRI
***********************************LGQSVSFGRFMSESLAWEKWSSF***********************AFFEAHYKE************************************************************************************************************************************************************************************************SIYLTPAREINRLTSTIVRK**************************************************************************************************************************IRKLRQTLCFKARPLPHFY****************************************************************************************
***STCLMQMQVQQPFSY*****************LGQSVSFGRFMSESLAWEKWSSFS***************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************I
********QMQVQQPFSYVSGFPNEAKEEGNPIHALGQSVSFGRFMSESLAWEKWSSFSSHNKYVEEAERYSRPGSVAQKKAFFEAHYKELAARKKAAALLEQAQDASNN*******************SQTIAVEEQEAATILVHESE************************TNQLERVVVVDSK****************************************************************QSTKEINATPIKKKSAIDFADNKRSTPKSIHKSIYLTPAREINRLTSTIVRKIDGS****************LMTPTAASVNGAPKHPLATPWSENRRDGTPHDSNMGSKTVRARWNFLPTENKLQSPNSFTPFRLRTEERAARRKEKLEEKFNANQIQKLQKQVTLKEKAETEIRKLRQTLCFKARPLPHFYKERAIPK*********************************************************PTKITHENKSPNIQHEYQSTKCRI
***STCLMQMQVQQPFSY*********************VSFGRFMSESLAWEKWSSFSSHNKYVEEAERYSRPGSVAQKKAFFEAHYKELAARKKAA************************************V***EAATILVH*****************************QLERV*VVDSKRE******************************************************************************************************************************************************************************************************RT***AARRKEKLEEKFNANQIQKLQKQVTLKEKAETEIRKLRQTLCFKARPLPHFYK*********************************************************************************ST****
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MGESTCLMQMQVQQPFSYVSGFPNEAKEEGNPIHALGQSVSFGRFMSESLAWEKWSSFSSHNKYVEEAERYSRPGSVAQKKAFFEAHYKELAARKKAAALLEQAQDASNNNLAGESQPEGEVENVTAQDSQTIAVEEQEAATILVHESESNSVLGQRSVDGEKETENCEKTKSTNQLERVVVVDSKREAKDSKLSGANQMQKPRLKSSNSNQDDRASMSKKKPSFSSSKSLNFGRATKTPSTPAKPTAPLQSTKEINATPIKKKSAIDFADNKRSTPKSIHKSIYLTPAREINRLTSTIVRKIDGSKVMGSNSKASKDCSTPLMTPTAASVNGAPKHPLATPWSENRRDGTPHDSNMGSKTVRARWNFLPTENKLQSPNSFTPFRLRTEERAARRKEKLEEKFNANQIQKxxxxxxxxxxxxxxxxxxxxxLCFKARPLPHFYKERAIPKSQMNKDPPTRPQSPKLTASTFQTKPSTPRQRPPTKHIGSDHVLEKKSHASTRSLASRPTKITHENKSPNIQHEYQSTKCRI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query531 2.2.26 [Sep-21-2011]
Q84ZT9202 Protein WAVE-DAMPENED 2 O no no 0.160 0.420 0.443 4e-10
Q8GYX9286 Protein WVD2-like 1 OS=Ar no no 0.158 0.293 0.413 4e-08
>sp|Q84ZT9|WVD2_ARATH Protein WAVE-DAMPENED 2 OS=Arabidopsis thaliana GN=WVD2 PE=2 SV=1 Back     alignment and function desciption
 Score = 67.0 bits (162), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 39/88 (44%), Positives = 57/88 (64%), Gaps = 3/88 (3%)

Query: 385 RLRTEERAARRKE---KLEEKFNANQIQKLQKQVTLKEKAETEIRKLRQTLCFKARPLPH 441
           R R+ +RA +RKE   KLEEK  A + ++++ +   KE+ E  I++LR+ L FKA P+P 
Sbjct: 88  RFRSAQRAEKRKEYYQKLEEKHQALEAERIELEQRQKEEQEAAIKQLRKNLKFKANPVPD 147

Query: 442 FYKERAIPKSQMNKDPPTRPQSPKLTAS 469
           FY +R   K ++ K P TRP+SPKL  S
Sbjct: 148 FYYQRPPVKPELKKFPLTRPKSPKLNLS 175




Microtubule-associated protein (MAP) that regulates the orientation of interphase cortical microtubules. Able to bundle microtubules in vitro. Modulates both rotational polarity and anisotropic cell expansion during organ growth. Promotes clockwise root and etiolated hypocotyls coiling, clockwise leaf curling, but left-handed petiole twisting.
Arabidopsis thaliana (taxid: 3702)
>sp|Q8GYX9|WDL1_ARATH Protein WVD2-like 1 OS=Arabidopsis thaliana GN=WDL1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query531
224055665547 predicted protein [Populus trichocarpa] 0.954 0.926 0.536 1e-138
255571990543 conserved hypothetical protein [Ricinus 0.951 0.930 0.543 1e-134
296081318567 unnamed protein product [Vitis vinifera] 0.956 0.895 0.502 1e-119
359488656528 PREDICTED: uncharacterized protein LOC10 0.883 0.888 0.492 1e-103
449450032572 PREDICTED: uncharacterized protein LOC10 0.894 0.830 0.414 5e-93
356560530 1226 PREDICTED: uncharacterized protein LOC10 0.828 0.358 0.406 2e-59
356573730 658 PREDICTED: uncharacterized protein LOC10 0.536 0.433 0.471 2e-54
449450405528 PREDICTED: uncharacterized protein LOC10 0.913 0.918 0.344 6e-42
449494498528 PREDICTED: uncharacterized protein LOC10 0.913 0.918 0.342 2e-41
255547916481 conserved hypothetical protein [Ricinus 0.822 0.908 0.333 2e-41
>gi|224055665|ref|XP_002298592.1| predicted protein [Populus trichocarpa] gi|222845850|gb|EEE83397.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  499 bits (1284), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 302/563 (53%), Positives = 375/563 (66%), Gaps = 56/563 (9%)

Query: 1   MGESTCLMQMQVQQPFSYVSGFPNEAKEEGNPIHALGQSVSFGRFMSESLAWEKWSSFSS 60
           MG++TC+MQ     PFSY +G  N+AKE GNPIHALGQS+SFGRFMS+SL+WEKWSSFS 
Sbjct: 1   MGDTTCVMQ-----PFSYAAGISNDAKE-GNPIHALGQSISFGRFMSDSLSWEKWSSFS- 53

Query: 61  HNKYVEEAERYSRPGSVAQKKAFFEAHYKELAARKKAAALLEQAQDASNNNLAGESQPEG 120
           HN+YVEEAE++SRPGSVAQKKAFFEAHY+ LAARK AA L EQA   +NN    E + EG
Sbjct: 54  HNRYVEEAEKFSRPGSVAQKKAFFEAHYRNLAARKAAALL-EQANAEANN--VQEPENEG 110

Query: 121 EVENVTAQDSQTIAVEEQEA--------------ATILVHESESNSVLGQR--------- 157
            + + T QDS T+A   QEA              A+ +  ++   S +            
Sbjct: 111 GIHDKTTQDSLTVATNSQEAGDREEVHVQQVNCEASFVADDNTRTSNVDMERFESSNVEE 170

Query: 158 ---SVDGEKETENCEKTKSTNQLERVVVVDSKREAKDSKLSGANQMQKPRLKSSNSNQDD 214
              S + E   ENC K ++ NQ   +V VD+K E K+ +LS + QM+KP LK   S +DD
Sbjct: 171 VEPSAENEILVENCVKNETLNQ---IVKVDNKEEVKEMELSVSKQMEKPLLKDFMSCKDD 227

Query: 215 RASMSKKKPSFSSSKSLNFGRATKTPSTPAKPTAPLQSTKEINATPIKKKSAIDFADNKR 274
            ASMSKKKP+ SSSKS  + +A+K PSTPAKP   +++ KE  ATPI KKSA++  + ++
Sbjct: 228 AASMSKKKPAVSSSKSSIYDKASKLPSTPAKPAPSVRAKKENTATPISKKSALESVERRK 287

Query: 275 STPKSIHKSIYLTPAREINRLTSTIVRKIDGSKVMGSNSKASKDCSTPLMTPTAASVNGA 334
            TPKS HKS+  TPARE NR+TS+I+RKID S+V GS+SK+SKDC TP  TP        
Sbjct: 288 PTPKSTHKSMNFTPAREFNRITSSIIRKIDNSRV-GSHSKSSKDCPTPSRTPMMMVSIAE 346

Query: 335 PKHPLATPWSENRRDGTP-HDSNMGSKTVRARWNFLPTE---------NKLQSPNSFTPF 384
            KHPLATP SE RR  TP H S  GSKTVR++W+FLP +         N+ QSP++  PF
Sbjct: 347 SKHPLATPQSEKRRAKTPLHPSTSGSKTVRSKWHFLPKDCSMFMTSSRNRSQSPSASIPF 406

Query: 385 RLRTEERAARRKEKLEEKFNANQIQKLQKQVTLKEKAETEIRKLRQTLCFKARPLPHFYK 444
             RTEERAARRKEKLEEKFNA Q QK+Q QVTLKEKAETE+++LRQ+LCFKARPLP FYK
Sbjct: 407 SFRTEERAARRKEKLEEKFNAYQAQKVQLQVTLKEKAETELKRLRQSLCFKARPLPDFYK 466

Query: 445 ERAIPKSQMNKDPPTRPQSP----KLTASTFQTKPSTPRQRPPTKHIGSDHVLEKKSHAS 500
           +R  P +QM K P T  +SP    K+T S  ++    P Q    K+ GS   ++KKS  +
Sbjct: 467 QRVAPNNQMEKVPLTHSESPEPGRKMTPSKIRSASQLP-QWSSLKNSGSKDAMQKKSD-N 524

Query: 501 TRSLASRPTKITHENKSPNIQHE 523
            RSLASR     HEN SPNIQHE
Sbjct: 525 PRSLASRLKASPHENTSPNIQHE 547




Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255571990|ref|XP_002526936.1| conserved hypothetical protein [Ricinus communis] gi|223533688|gb|EEF35423.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|296081318|emb|CBI17700.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359488656|ref|XP_002267994.2| PREDICTED: uncharacterized protein LOC100261110 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449450032|ref|XP_004142768.1| PREDICTED: uncharacterized protein LOC101216656 [Cucumis sativus] gi|449483827|ref|XP_004156704.1| PREDICTED: uncharacterized LOC101216656 [Cucumis sativus] Back     alignment and taxonomy information
>gi|356560530|ref|XP_003548544.1| PREDICTED: uncharacterized protein LOC100783769 [Glycine max] Back     alignment and taxonomy information
>gi|356573730|ref|XP_003555010.1| PREDICTED: uncharacterized protein LOC100816784 [Glycine max] Back     alignment and taxonomy information
>gi|449450405|ref|XP_004142953.1| PREDICTED: uncharacterized protein LOC101204130 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449494498|ref|XP_004159562.1| PREDICTED: uncharacterized protein LOC101225983 [Cucumis sativus] Back     alignment and taxonomy information
>gi|255547916|ref|XP_002515015.1| conserved hypothetical protein [Ricinus communis] gi|223546066|gb|EEF47569.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query531
TAIR|locus:2082364391 AT3G01710 "AT3G01710" [Arabido 0.504 0.685 0.335 1.4e-27
TAIR|locus:2168768303 AT5G40700 "AT5G40700" [Arabido 0.291 0.511 0.403 1.9e-21
TAIR|locus:2092115533 AT3G26050 "AT3G26050" [Arabido 0.935 0.932 0.236 1e-18
TAIR|locus:2013985478 AT1G70950 "AT1G70950" [Arabido 0.131 0.146 0.518 8.5e-18
TAIR|locus:2032487540 AT1G24160 "AT1G24160" [Arabido 0.114 0.112 0.593 2.5e-16
TAIR|locus:2201240367 MDP40 "AT1G23060" [Arabidopsis 0.322 0.465 0.338 2.8e-12
TAIR|locus:2020623504 AT1G70100 "AT1G70100" [Arabido 0.092 0.097 0.66 3.4e-12
TAIR|locus:2127771437 AT4G32330 "AT4G32330" [Arabido 0.177 0.215 0.375 8.7e-10
TAIR|locus:504955059202 WVD2 "AT5G28646" [Arabidopsis 0.116 0.306 0.461 6.5e-09
TAIR|locus:2039235432 AT2G35880 "AT2G35880" [Arabido 0.220 0.270 0.330 1e-08
TAIR|locus:2082364 AT3G01710 "AT3G01710" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 310 (114.2 bits), Expect = 1.4e-27, P = 1.4e-27
 Identities = 101/301 (33%), Positives = 135/301 (44%)

Query:     1 MGESTCLMQMQVQQPFSYVSGFPNEAKEEGNPIHALGQSVSFGRFMSESLAWEKWSSFSS 60
             MGES CLMQ     PFSY       A  +G+ + ALGQSVSFGRFMSE L WEKWS+FS+
Sbjct:     1 MGESACLMQ-----PFSY-------AAPQGDSLGALGQSVSFGRFMSEKLDWEKWSAFST 48

Query:    61 HNKYVEEAERYSRPGSVAQKKAFFEAHYXXXXXXXXXXXXXXXXXXXSNNNLAGESQP-- 118
              N YV EAERYS+PGSVAQKKAFFEAHY                          E  P  
Sbjct:    49 QNPYVAEAERYSKPGSVAQKKAFFEAHYKKVAAARKAAAEEALLLQQQIPKPQPEKSPVQ 108

Query:   119 -----EGEVEN--VTAQDSQTIAVEEQEAATI-LVHESE---SNSVLGQRSVDGEKETE- 166
                  EGE ++  V+  D +        +A + L+ E E   SN    ++   G  E+E 
Sbjct:   109 EEDINEGEKKDWMVSKPDLEIPRGSLDVSAQLKLLAEKEGRFSNRQSDEKENCGMAESEI 168

Query:   167 NCEKTKSTNQLERVVVVDSKREAKDSKLSGANQMQKPRLKSSNSNQDDRAXXXXXXXXXX 226
             N    +     E+ ++   K+++KDS+   +    KPR+   NS++   +          
Sbjct:   169 NGRTAEEQVDEEKPILKSVKKKSKDSQPKSST---KPRVSKYNSSERTPSKKSNNKSSSY 225

Query:   227 XXX-XLNFGRXXXXXXXXXXXXXXLQSTKEINA---TPIKKKSAIDFADNKRSTPKSIHK 282
                    F R               + TK+      TP  K SA    ++  STP S + 
Sbjct:   226 TFTPAKEFNRLVSIIRKIDGSRASSKPTKDCKTPLRTPSNKVSAKGMVEDSLSTPLSSNT 285

Query:   283 S 283
             S
Sbjct:   286 S 286


GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2168768 AT5G40700 "AT5G40700" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2092115 AT3G26050 "AT3G26050" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2013985 AT1G70950 "AT1G70950" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2032487 AT1G24160 "AT1G24160" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2201240 MDP40 "AT1G23060" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2020623 AT1G70100 "AT1G70100" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2127771 AT4G32330 "AT4G32330" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:504955059 WVD2 "AT5G28646" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2039235 AT2G35880 "AT2G35880" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
estExt_fgenesh4_pg.C_LG_I2248
hypothetical protein (547 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query531
pfam0688657 pfam06886, TPX2, Targeting protein for Xklp2 (TPX2 2e-08
>gnl|CDD|191634 pfam06886, TPX2, Targeting protein for Xklp2 (TPX2) Back     alignment and domain information
 Score = 50.5 bits (121), Expect = 2e-08
 Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 3/57 (5%)

Query: 386 LRTEERAARRKE---KLEEKFNANQIQKLQKQVTLKEKAETEIRKLRQTLCFKARPL 439
           L ++ERA +R E   KLEEK  A + +K + +   KE+ E  I++LR+ L  KA P+
Sbjct: 1   LHSDERAEKRAEFDKKLEEKEKALEAEKEEAEARQKEEEEEAIKQLRKELVPKANPM 57


This family represents a conserved region approximately 60 residues long within the eukaryotic targeting protein for Xklp2 (TPX2). Xklp2 is a kinesin-like protein localised on centrosomes throughout the cell cycle and on spindle pole microtubules during metaphase. In Xenopus, it has been shown that Xklp2 protein is required for centrosome separation and maintenance of spindle bi-polarity. TPX2 is a microtubule-associated protein that mediates the binding of the C-terminal domain of Xklp2 to microtubules. It is phosphorylated during mitosis in a microtubule-dependent way. Length = 57

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 531
PF0688657 TPX2: Targeting protein for Xklp2 (TPX2); InterPro 99.52
>PF06886 TPX2: Targeting protein for Xklp2 (TPX2); InterPro: IPR009675 This family represents a conserved region approximately 60 residues long within the eukaryotic targeting protein for Xklp2 (TPX2) Back     alignment and domain information
Probab=99.52  E-value=2.4e-14  Score=113.88  Aligned_cols=54  Identities=50%  Similarity=0.739  Sum_probs=53.1

Q ss_pred             cchHHHHHHHHH---hHHHhhhhhHHHHHhHHHHHhHHHHHHHHHHhhhccccccCC
Q 009583          386 LRTEERAARRKE---KLEEKFNANQIQKLQKQVTLKEKAETEIRKLRQTLCFKARPL  439 (531)
Q Consensus       386 ~ksdeRAekRKE---KLEEK~~AkE~Ek~~lqak~KEe~EaeIKkLRksL~fKA~Pm  439 (531)
                      |+||+||++|+|   +|+||.+++|.++.+++++.+++++++|++||++|+|||+||
T Consensus         1 l~t~~RA~~R~eF~~kl~EK~~~~e~~~~~~e~~~~e~ee~eik~LRk~lv~kA~Pm   57 (57)
T PF06886_consen    1 LHTDERAEERKEFDKKLEEKEKAKEAEKEEREAKQKEEEEEEIKQLRKELVFKAQPM   57 (57)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence            789999999998   999999999999999999999999999999999999999998



Xklp2 is a kinesin-like protein localised on centrosomes throughout the cell cycle and on spindle pole microtubules during metaphase. In Xenopus, it has been shown that Xklp2 protein is required for centrosome separation and maintenance of spindle bi-polarity []. TPX2 is a microtubule-associated protein that mediates the binding of the C-terminal domain of Xklp2 to microtubules. It is phosphorylated during mitosis in a microtubule-dependent way [].


Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00