Citrus Sinensis ID: 009607

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-
MVLYDSATSGGSNSGSSSSCSGTKQPVAEIDGLLAGAGYKVRSSELRQVAQRLERLETVMVNSPADISQLASDTVHYNPSDLASWVDSLLSEFNQPPLPLPSDLPDLPDIIAGPSVNHTAVGNYLTDNFTTTQQQQQQQQQMMIVTAMEEDSGIRLVHMLMTCAESVQRGEMAVAGSLIEDMKGLLTRVNPSCGIGKVAGCFIDALSFRIMGVGGSICGSVSENEILYHHFYEACPYLKFAHFTANQAILEAFDGHDCVHVVDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLRLAELARSVNIRFTFRGVAASRLEDVKPWMLQVSPKEALAVNSILQLHKLLGSDPARNSPMEMVLGWIRNLNPKIMTVVEQESNHNQPEFLDRFTTALYYYSTMFDSLEACPLQPEKALAEIYLQREICNVVCCEGSARVERHEPLAKWRNRLAGAGFRPLHLGSNAFRQASMLLTLFSAEGYSVEETEGCLTLGWHSRPLIAASAWHAVPDVMMSHQNSN
cccccccccccccccccccccccccccccccHHHcccccEEcccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccEEEEEccccccccHHHHHHHHHccccccccEEEEEEcccccccHHHHHHHHHHHHHHHHHccccEEEEEEEcccccccccccccccccccEEEEHHHHHccccccccccccHHHHHHHHHHHccccEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHccccccccccHHHHHHHHHHHccccccEEEEEEccEEEEEEcccEEEEEEEcEEcccccccccccc
cEEEEccccccccccccccccccccccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHccccccccccccHHHHHHHHHHHcccccHHcccccccccccccccccccccccccEEEEccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccEEEEEEcccccccHHHHHHHHHHcccccccEEEEEccccccccccccHHHHHHHHHHHHHHccccEEEEEEEccccccccHHHcccccccEEEEEHHHHHHcccccccccccHHHHHHHHHHHccccEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccHHHcccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccEEEEEcccEEEEcccccEEEEEEEccccccccEcccccc
mvlydsatsggsnsgsssscsgtkqpvAEIDGLlagagykvrSSELRQVAQRLERLETvmvnspadisqlasdtvhynpsdLASWVDSLLsefnqpplplpsdlpdlpdiiagpsvnhtavgnyltdnfttTQQQQQQQQQMMIVTAMEEDSGIRLVHMLMTCAESVQRGEMAVAGSLIEDMKGLLtrvnpscgigkvAGCFIDALSFRIMGVGGsicgsvseneilyhhfyeacpylkfahFTANQAILEafdghdcvhvvdfnlmhglqWPALIQALAlrpggppllrltgigppspdgrdSLREIGLRLAELARSVNIRFTFRGVAasrledvkpwmlqvspkeaLAVNSILQLHKllgsdparnspmEMVLGWIRNLNPKIMTVVEqesnhnqpeFLDRFTTALYYYSTMfdsleacplqpeKALAEIYLQREICNVVccegsarverhePLAKWRNRlagagfrplhlgsnAFRQASMLLTLFsaegysveetegcltlgwhsrpliaasawhavPDVMMSHQNSN
mvlydsatsggsnsgsssscsgtKQPVAEIDGLLAGAGYKVRSSELRQVAQRLERLETVMVNSPADISQLASDTVHYNPSDLASWVDSLLSEFNQPPLPLPSDLPDLPDIIAGPSVNHTAVGNYLTDNFTTTQQQQQQQQQMMIVTAMEEDSGIRLVHMLMTCAESVQRGEMAVAGSLIEDMKGLLTRVNPSCGIGKVAGCFIDALSFRIMGVGGSICGSVSENEILYHHFYEACPYLKFAHFTANQAILEAFDGHDCVHVVDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLRLAElarsvnirfTFRGVAASRLEDVKPWMLQVSPKEALAVNSILQLHKLLGSDPARNSPMEMVLGWIRNLNPKIMTVVEQESNHNQPEFLDRFTTALYYYSTMFDSLEACPLQPEKALAEIYLQREICNVVCCEGSARVERHEPLAKWRNRLAGAGFRPLHLGSNAFRQASMLLTLFSAEGYSVEETEGCLTLGWHSRPLIAASAWHAVPDVMMSHQNSN
MVLYDSATsggsnsgsssscsgTKQPVAEIDGLLAGAGYKVRSSELRQVAQRLERLETVMVNSPADISQLASDTVHYNPSDLASWVDSLLSEFNQpplplpsdlpdlpdIIAGPSVNHTAVGNYLTDNFtttqqqqqqqqqMMIVTAMEEDSGIRLVHMLMTCAESVQRGEMAVAGSLIEDMKGLLTRVNPSCGIGKVAGCFIDALSFRIMGVGGSICGSVSENEILYHHFYEACPYLKFAHFTANQAILEAFDGHDCVHVVDFNLMHGLQWPALIQalalrpggppllrltgigppSPDGRDSLREIGLRLAELARSVNIRFTFRGVAASRLEDVKPWMLQVSPKEALAVNSILQLHKLLGSDPARNSPMEMVLGWIRNLNPKIMTVVEQESNHNQPEFLDRFTTALYYYSTMFDSLEACPLQPEKALAEIYLQREICNVVCCEGSARVERHEPLAKWRNRLAGAGFRPLHLGSNAFRQASMLLTLFSAEGYSVEETEGCLTLGWHSRPLIAASAWHAVPDVMMSHQNSN
*****************************IDGLLAGAGYKVR******VA*RLERLETVMV*****I**LASDTVHYNPSDLASWVDSLLS*****************DIIAGPSVNHTAVGNYLT**************************GIRLVHMLMTCAESVQRGEMAVAGSLIEDMKGLLTRVNPSCGIGKVAGCFIDALSFRIMGVGGSICGSVSENEILYHHFYEACPYLKFAHFTANQAILEAFDGHDCVHVVDFNLMHGLQWPALIQALALRPGGPPLLRLTGI***********REIGLRLAELARSVNIRFTFRGVAASRLEDVKPWMLQVSPKEALAVNSILQLHKLLGS*******MEMVLGWIRNLNPKIMTVVEQE**HNQPEFLDRFTTALYYYSTMFDSLEACPLQPEKALAEIYLQREICNVVCCEGSARVERHEPLAKWRNRLAGAGFRPLHLGSNAFRQASMLLTLFSAEGYSVEETEGCLTLGWHSRPLIAASAWHAVPD*********
******************************DGLLAGAGYKVRS*****************************************************************************************************************VHMLMTCAESVQRGEMAVAGSLIEDMK**************VAGCFIDALSFRIMGVGGSICGSVSENEILYHHFYEACPYLKFAHFTANQAILEAFDGHDCVHVVDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLRLAELARSVNIRFTFRGVAASRLEDVKPWMLQVSPKEALAVNSILQLHKLLGSDPARNSPMEMVLGWIRNLNPKIMTVVEQESNHNQPEFLDRFTTALYYYSTMFDSLEACPLQPEKALAEIYLQREICNVVCCEGSARVERHEPLAKWRNRLAGAGFRPLHLGSNAFRQASMLLTLFSAEGYSVEETEGCLTLGWHSRPLIAASAWH*************
************************QPVAEIDGLLAGAGYKVRSSELRQVAQRLERLETVMVNSPADISQLASDTVHYNPSDLASWVDSLLSEFNQPPLPLPSDLPDLPDIIAGPSVNHTAVGNYLTDNF*************MIVTAMEEDSGIRLVHMLMTCAESVQRGEMAVAGSLIEDMKGLLTRVNPSCGIGKVAGCFIDALSFRIMGVGGSICGSVSENEILYHHFYEACPYLKFAHFTANQAILEAFDGHDCVHVVDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLRLAELARSVNIRFTFRGVAASRLEDVKPWMLQVSPKEALAVNSILQLHKLLGSDPARNSPMEMVLGWIRNLNPKIMTVVEQESNHNQPEFLDRFTTALYYYSTMFDSLEACPLQPEKALAEIYLQREICNVVCCEGSARVERHEPLAKWRNRLAGAGFRPLHLGSNAFRQASMLLTLFSAEGYSVEETEGCLTLGWHSRPLIAASAWHAVPDVMMSHQNSN
****************************EIDGLLAGAGYKVRSSELRQVAQRLERLETVMVNS***I*QL*SDTVHYNPSDLASWVDSLLSEFNQPPLPLPSDLPDLPDIIAGPSV**************************MIVTAMEEDSGIRLVHMLMTCAESVQRGEMAVAGSLIEDMKGLLTRVNPSCGIGKVAGCFIDALSFRIMGVGGSICGSVSENEILYHHFYEACPYLKFAHFTANQAILEAFDGHDCVHVVDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLRLAELARSVNIRFTFRGVAASRLEDVKPWMLQVSPKEALAVNSILQLHKLLGSDPARNSPMEMVLGWIRNLNPKIMTVVEQESNHNQPEFLDRFTTALYYYSTMFDSLEACPLQPEKALAEIYLQREICNVVCCEGSARVERHEPLAKWRNRLAGAGFRPLHLGSNAFRQASMLLTLFSAEGYSVEETEGCLTLGWHSRPLIAASAWHAVPDV********
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MVLYDSATSGGSNSGSSSSCSGTKQPVAEIDGLLAGAGYKVRSSELRQVAQRLERLETVMVNSPADISQLASDTVHYNPSDLASWVDSLLSEFNQPPLPLPSDLPDLPDIIAGPSVNHTAVGNYLTDNFTTTQQQQQQQQQMMIVTAMEEDSGIRLVHMLMTCAESVQRGEMAVAGSLIEDMKGLLTRVNPSCGIGKVAGCFIDALSFRIMGVGGSICGSVSENEILYHHFYEACPYLKFAHFTANQAILEAFDGHDCVHVVDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLRLAELARSVNIRFTFRGVAASRLEDVKPWMLQVSPKEALAVNSILQLHKLLGSDPARNSPMEMVLGWIRNLNPKIMTVVEQESNHNQPEFLDRFTTALYYYSTMFDSLEACPLQPEKALAEIYLQREICNVVCCEGSARVERHEPLAKWRNRLAGAGFRPLHLGSNAFRQASMLLTLFSAEGYSVEETEGCLTLGWHSRPLIAASAWHAVPDVMMSHQNSN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query531 2.2.26 [Sep-21-2011]
Q9LQT8533 DELLA protein GAI OS=Arab yes no 0.903 0.900 0.505 1e-138
Q5BN22579 DELLA protein RGA2 OS=Bra N/A no 0.937 0.860 0.471 1e-136
Q9SLH3587 DELLA protein RGA OS=Arab no no 0.892 0.807 0.470 1e-134
Q8S4W7590 DELLA protein GAI1 OS=Vit no no 0.951 0.855 0.464 1e-132
Q84TQ7537 DELLA protein GAI OS=Goss N/A no 0.947 0.936 0.500 1e-131
Q7Y1B6588 DELLA protein GAI OS=Sola N/A no 0.958 0.865 0.452 1e-127
Q6EI06579 DELLA protein GAIP OS=Cuc N/A no 0.958 0.879 0.446 1e-126
Q6EI05587 DELLA protein GAIP-B OS=C N/A no 0.939 0.850 0.450 1e-125
Q8GXW1547 DELLA protein RGL2 OS=Ara no no 0.894 0.868 0.463 1e-123
Q9C8Y3511 DELLA protein RGL1 OS=Ara no no 0.892 0.927 0.465 1e-121
>sp|Q9LQT8|GAI_ARATH DELLA protein GAI OS=Arabidopsis thaliana GN=GAI PE=1 SV=1 Back     alignment and function desciption
 Score =  492 bits (1267), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 258/510 (50%), Positives = 341/510 (66%), Gaps = 30/510 (5%)

Query: 30  IDGLLAGAGYKVRSSELRQVAQRLERLETVMVN-SPADISQLASDTVHYNPSDLASWVDS 88
           +D LLA  GYKVRSSE+  VAQ+LE+LE +M N    D+SQLA++TVHYNP++L +W+DS
Sbjct: 27  MDELLAVLGYKVRSSEMADVAQKLEQLEVMMSNVQEDDLSQLATETVHYNPAELYTWLDS 86

Query: 89  LLSEFNQPPLPLPSDLPDLPD--------IIAGPSVNHTAVGNYLT-------DNFTTTQ 133
           +L++ N P      DL  +P         I +  S N    G+  T        N     
Sbjct: 87  MLTDLNPPSSNAEYDLKAIPGDAILNQFAIDSASSSNQGGGGDTYTTNKRLKCSNGVVET 146

Query: 134 QQQQQQQQMMIVTAMEEDSGIRLVHMLMTCAESVQRGEMAVAGSLIEDMKGLLTRVNPSC 193
                +    +V    +++G+RLVH L+ CAE+VQ+  + VA +L++ + G L  V+   
Sbjct: 147 TTATAESTRHVVLVDSQENGVRLVHALLACAEAVQKENLTVAEALVKQI-GFLA-VSQIG 204

Query: 194 GIGKVAGCFIDALSFRIMGVGGS---ICGSVSENEILYHHFYEACPYLKFAHFTANQAIL 250
            + KVA  F +AL+ RI  +  S   I  S+S+   L  HFYE CPYLKFAHFTANQAIL
Sbjct: 205 AMRKVATYFAEALARRIYRLSPSQSPIDHSLSDT--LQMHFYETCPYLKFAHFTANQAIL 262

Query: 251 EAFDGHDCVHVVDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGL 310
           EAF G   VHV+DF++  GLQWPAL+QALALRPGGPP+ RLTGIGPP+PD  D L E+G 
Sbjct: 263 EAFQGKKRVHVIDFSMSQGLQWPALMQALALRPGGPPVFRLTGIGPPAPDNFDYLHEVGC 322

Query: 311 RLAELARSVNIRFTFRGVAASRLEDVKPWMLQVSPK--EALAVNSILQLHKLLGSDPARN 368
           +LA LA ++++ F +RG  A+ L D+   ML++ P   E++AVNS+ +LHKLLG    R 
Sbjct: 323 KLAHLAEAIHVEFEYRGFVANTLADLDASMLELRPSEIESVAVNSVFELHKLLG----RP 378

Query: 369 SPMEMVLGWIRNLNPKIMTVVEQESNHNQPEFLDRFTTALYYYSTMFDSLEACPLQPEKA 428
             ++ VLG +  + P+I TVVEQESNHN P FLDRFT +L+YYST+FDSLE  P   +K 
Sbjct: 379 GAIDKVLGVVNQIKPEIFTVVEQESNHNSPIFLDRFTESLHYYSTLFDSLEGVPSGQDKV 438

Query: 429 LAEIYLQREICNVVCCEGSARVERHEPLAKWRNRLAGAGFRPLHLGSNAFRQASMLLTLF 488
           ++E+YL ++ICNVV C+G  RVERHE L++WRNR   AGF   H+GSNAF+QASMLL LF
Sbjct: 439 MSEVYLGKQICNVVACDGPDRVERHETLSQWRNRFGSAGFAAAHIGSNAFKQASMLLALF 498

Query: 489 S-AEGYSVEETEGCLTLGWHSRPLIAASAW 517
           +  EGY VEE++GCL LGWH+RPLIA SAW
Sbjct: 499 NGGEGYRVEESDGCLMLGWHTRPLIATSAW 528
Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. In contrast to RGA, it is less sensitive to GA. Its activity is probably regulated by other phytohormones such as auxin and ethylene.
Arabidopsis thaliana (taxid: 3702)
>sp|Q5BN22|RGA2_BRACM DELLA protein RGA2 OS=Brassica campestris GN=RGA2 PE=3 SV=1 Back     alignment and function description
>sp|Q9SLH3|RGA_ARATH DELLA protein RGA OS=Arabidopsis thaliana GN=RGA PE=1 SV=1 Back     alignment and function description
>sp|Q8S4W7|GAI1_VITVI DELLA protein GAI1 OS=Vitis vinifera GN=GAI1 PE=2 SV=1 Back     alignment and function description
>sp|Q84TQ7|GAI_GOSHI DELLA protein GAI OS=Gossypium hirsutum GN=GAI PE=2 SV=1 Back     alignment and function description
>sp|Q7Y1B6|GAI_SOLLC DELLA protein GAI OS=Solanum lycopersicum GN=GAI PE=2 SV=1 Back     alignment and function description
>sp|Q6EI06|GAIP_CUCMA DELLA protein GAIP OS=Cucurbita maxima GN=GAIP PE=2 SV=1 Back     alignment and function description
>sp|Q6EI05|GAIPB_CUCMA DELLA protein GAIP-B OS=Cucurbita maxima GN=GAIPB PE=2 SV=1 Back     alignment and function description
>sp|Q8GXW1|RGL2_ARATH DELLA protein RGL2 OS=Arabidopsis thaliana GN=RGL2 PE=1 SV=2 Back     alignment and function description
>sp|Q9C8Y3|RGL1_ARATH DELLA protein RGL1 OS=Arabidopsis thaliana GN=RGL1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query531
66816781546 DELLA protein [Malus x domestica] 0.954 0.928 0.765 0.0
372477836547 spur-type DELLA protein [Malus x domesti 0.947 0.919 0.768 0.0
225445382532 PREDICTED: DELLA protein SLR1-like [Viti 0.941 0.939 0.775 0.0
257219871547 GAI/RGA-like 3-a [Gossypium hirsutum] gi 0.969 0.941 0.762 0.0
66816771546 DELLA protein [Malus x domestica] 0.928 0.902 0.783 0.0
257219873541 GAI/RGA-like 3-b [Gossypium hirsutum] gi 0.962 0.944 0.765 0.0
255576938536 DELLA protein GAI1, putative [Ricinus co 0.966 0.957 0.761 0.0
238821222538 GAI/RGA-like protein [Gossypium hirsutum 0.926 0.914 0.778 0.0
238821224571 GAI/RGA-like protein [Gossypium hirsutum 0.962 0.894 0.721 0.0
257219875535 GAI/RGA-like 4-a [Gossypium hirsutum] gi 0.915 0.908 0.760 0.0
>gi|66816781|gb|AAY56754.1| DELLA protein [Malus x domestica] Back     alignment and taxonomy information
 Score =  820 bits (2118), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/532 (76%), Positives = 450/532 (84%), Gaps = 25/532 (4%)

Query: 17  SSSCSG-------------TKQPVAEIDGLLAGAGYKVRSSELRQVAQRLERLETVMVNS 63
           S++CSG             TK P AEIDG LA AGYKVRSS+LR VAQRLERLETVMVNS
Sbjct: 6   STTCSGVSSSASSSSSSSVTKSP-AEIDGYLADAGYKVRSSDLRHVAQRLERLETVMVNS 64

Query: 64  PADISQLASDTVHYNPSDLASWVDSLLSEFN-QPPLPLPSDLPDLPD--IIAGPSVNHTA 120
           P+D+SQLASD V YNPSD+A+WVDSLLSEFN QP + LPSDL D PD  +I  P+     
Sbjct: 65  PSDLSQLASDAVLYNPSDIATWVDSLLSEFNHQPLMSLPSDL-DFPDSAVINNPA---AL 120

Query: 121 VGNYLTDNFTTTQQQQQQQQQMMIVTAMEEDSGIRLVHMLMTCAESVQRGEMAVAGSLIE 180
            G   TDN +      QQ  Q+ +VTAMEEDSGIRLVH+L+TCAESVQRGE+A+AGSLIE
Sbjct: 121 SGETWTDNSSFVSAVPQQNHQLTVVTAMEEDSGIRLVHLLVTCAESVQRGELALAGSLIE 180

Query: 181 DMKGLLTRVNPSCGIGKVAGCFIDALSFRIMGVG--GSICGSVSENEILYHHFYEACPYL 238
           +M+ L+TRVN SCGIGKVAG FIDALS RI      GS  GS  ENE+LYH+FYEACPYL
Sbjct: 181 NMQALMTRVNTSCGIGKVAGYFIDALSRRIFSPQSVGSAAGSTHENELLYHYFYEACPYL 240

Query: 239 KFAHFTANQAILEAFDGHDCVHVVDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPS 298
           KFAHFTANQAILEAF GHDCVHV+DFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPS
Sbjct: 241 KFAHFTANQAILEAFHGHDCVHVIDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPS 300

Query: 299 PDGRDSLREIGLRLAELARSVNIRFTFRGVAASRLEDVKPWMLQVSPKEALAVNSILQLH 358
           PDGRDSLREIGLRLAELARSVN+RF FRGVAASRLEDVKPWMLQVSPKEA+AVNSI+QLH
Sbjct: 301 PDGRDSLREIGLRLAELARSVNVRFAFRGVAASRLEDVKPWMLQVSPKEAVAVNSIMQLH 360

Query: 359 KLLGSDPARNSPMEMVLGWIRNLNPKIMTVVEQESNHNQPEFLDRFTTALYYYSTMFDSL 418
           +LLGSDP RNSP+EM+L WIRNLNPKI+TVVEQE++HN+P FLDRFT ALYYYSTMFDSL
Sbjct: 361 RLLGSDPNRNSPIEMMLSWIRNLNPKIVTVVEQEADHNKPGFLDRFTEALYYYSTMFDSL 420

Query: 419 EACPLQPEKALAEIYLQREICNVVCCEGSARVERHEPLAKWRNRLAGAGFRPLHLGSNAF 478
           EACP+QPEK LAE+Y+QREICNVVCCEG+ARVERHEPL+KWR RL  AGF PLHLGSNAF
Sbjct: 421 EACPMQPEKTLAEMYIQREICNVVCCEGAARVERHEPLSKWRTRLGQAGFSPLHLGSNAF 480

Query: 479 RQASMLLTLFSAEGYSVEETEGCLTLGWHSRPLIAASAWHA--VPDVMMSHQ 528
           +QASMLLTLFSAEGY VEE +GCLTLGWHSRPLIAASAW    V +  ++HQ
Sbjct: 481 KQASMLLTLFSAEGYRVEENQGCLTLGWHSRPLIAASAWQVMHVAEATINHQ 532

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|372477836|gb|AEX97112.1| spur-type DELLA protein [Malus x domestica] Back     alignment and taxonomy information
>gi|225445382|ref|XP_002284952.1| PREDICTED: DELLA protein SLR1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|257219871|gb|ACV52013.1| GAI/RGA-like 3-a [Gossypium hirsutum] gi|296398833|gb|ADH10264.1| GAI3a [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|66816771|gb|AAY56753.1| DELLA protein [Malus x domestica] Back     alignment and taxonomy information
>gi|257219873|gb|ACV52014.1| GAI/RGA-like 3-b [Gossypium hirsutum] gi|296398839|gb|ADH10267.1| GAI3b [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|255576938|ref|XP_002529354.1| DELLA protein GAI1, putative [Ricinus communis] gi|223531174|gb|EEF33021.1| DELLA protein GAI1, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|238821222|gb|ACR58456.1| GAI/RGA-like protein [Gossypium hirsutum] gi|257219877|gb|ACV52016.1| GAI/RGA-like 4-b [Gossypium hirsutum] gi|296398837|gb|ADH10266.1| GAI4b [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|238821224|gb|ACR58457.1| GAI/RGA-like protein [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|257219875|gb|ACV52015.1| GAI/RGA-like 4-a [Gossypium hirsutum] gi|296398835|gb|ADH10265.1| GAI4a [Gossypium hirsutum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query531
TAIR|locus:2005516587 RGA1 "REPRESSOR OF GA1-3 1" [A 0.728 0.659 0.473 5.5e-113
TAIR|locus:2006747533 GAI "GIBBERELLIC ACID INSENSIT 0.903 0.900 0.464 1.8e-110
TAIR|locus:2099624547 RGL2 "RGA-like 2" [Arabidopsis 0.691 0.670 0.453 2.2e-101
TAIR|locus:2201557511 RGL1 "RGA-like 1" [Arabidopsis 0.900 0.935 0.432 7.9e-101
TAIR|locus:2157477523 RGL3 "RGA-like protein 3" [Ara 0.677 0.688 0.450 2.6e-96
TAIR|locus:2164783490 PAT1 "AT5G48150" [Arabidopsis 0.666 0.722 0.342 1.8e-52
TAIR|locus:2044973413 SCL21 "AT2G04890" [Arabidopsis 0.685 0.881 0.318 3.8e-46
TAIR|locus:2008076597 SCL5 "AT1G50600" [Arabidopsis 0.691 0.614 0.334 2.1e-45
TAIR|locus:2015243658 AT1G63100 "AT1G63100" [Arabido 0.666 0.537 0.311 7.5e-44
TAIR|locus:2026982593 SCL1 "AT1G21450" [Arabidopsis 0.668 0.598 0.314 2.5e-42
TAIR|locus:2005516 RGA1 "REPRESSOR OF GA1-3 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 935 (334.2 bits), Expect = 5.5e-113, Sum P(2) = 5.5e-113
 Identities = 191/403 (47%), Positives = 260/403 (64%)

Query:   121 VGNYLTDNFXXXXXXXXXXXXMMIVTAMEEDSGIRLVHMLMTCAESVQRGEMAVAGSLIE 180
             +G  +T               +++V + E  +G+RLVH LM CAE++Q+  + +A +L++
Sbjct:   188 IGTTVTTTTTTTTAAGESTRSVILVDSQE--NGVRLVHALMACAEAIQQNNLTLAEALVK 245

Query:   181 DMKGLLTRVNPSCGIGKVAGCFIDALSFRIMGVG---GSICGSVSENEILYHHFYEACPY 237
              + G L  V+ +  + KVA  F +AL+ RI  +      I   +S+   L  HFYE CPY
Sbjct:   246 QI-GCLA-VSQAGAMRKVATYFAEALARRIYRLSPPQNQIDHCLSDT--LQMHFYETCPY 301

Query:   238 LKFAHFTANQAILEAFDGHDCVHVVDFNLMHGLQWPALIQXXXXXXXXXXXXXXXXXXXX 297
             LKFAHFTANQAILEAF+G   VHV+DF++  GLQWPAL+Q                    
Sbjct:   302 LKFAHFTANQAILEAFEGKKRVHVIDFSMNQGLQWPALMQALALREGGPPTFRLTGIGPP 361

Query:   298 SPDGRDSLREIGLRLAELARSVNIRFTFRGVAASRLEDVKPWMLQVSPK--EALAVNSIL 355
             +PD  D L E+G +LA+LA ++++ F +RG  A+ L D+   ML++ P   EA+AVNS+ 
Sbjct:   362 APDNSDHLHEVGCKLAQLAEAIHVEFEYRGFVANSLADLDASMLELRPSDTEAVAVNSVF 421

Query:   356 QLHKLLGSDPARNSPMEMVLGWIRNLNPKIMTVVEQESNHNQPEFLDRFTTALYYYSTMF 415
             +LHKLLG    R   +E VLG ++ + P I TVVEQESNHN P FLDRFT +L+YYST+F
Sbjct:   422 ELHKLLG----RPGGIEKVLGVVKQIKPVIFTVVEQESNHNGPVFLDRFTESLHYYSTLF 477

Query:   416 DSLEACPLQPEKALAEIYLQREICNVVCCEGSARVERHEPLAKWRNRLAGAGFRPLHLGS 475
             DSLE  P   +K ++E+YL ++ICN+V CEG  RVERHE L++W NR   +G  P HLGS
Sbjct:   478 DSLEGVPNSQDKVMSEVYLGKQICNLVACEGPDRVERHETLSQWGNRFGSSGLAPAHLGS 537

Query:   476 NAFRQASMLLTLF-SAEGYSVEETEGCLTLGWHSRPLIAASAW 517
             NAF+QASMLL++F S +GY VEE+ GCL LGWH+RPLI  SAW
Sbjct:   538 NAFKQASMLLSVFNSGQGYRVEESNGCLMLGWHTRPLITTSAW 580
GO:0005634 "nucleus" evidence=ISM;IDA;TAS
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA;TAS
GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS
GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA;TAS
GO:0005515 "protein binding" evidence=IPI
GO:0009651 "response to salt stress" evidence=IGI;RCA
GO:0009723 "response to ethylene stimulus" evidence=IGI;RCA
GO:0009737 "response to abscisic acid stimulus" evidence=IGI;RCA
GO:0042538 "hyperosmotic salinity response" evidence=IGI;RCA
GO:0010029 "regulation of seed germination" evidence=IGI
GO:2000033 "regulation of seed dormancy process" evidence=IGI
GO:0010187 "negative regulation of seed germination" evidence=IGI
GO:0010218 "response to far red light" evidence=IEP
GO:2000377 "regulation of reactive oxygen species metabolic process" evidence=IGI
GO:0009867 "jasmonic acid mediated signaling pathway" evidence=IGI;RCA
GO:0042176 "regulation of protein catabolic process" evidence=IMP
GO:0006096 "glycolysis" evidence=RCA
GO:0006833 "water transport" evidence=RCA
GO:0006972 "hyperosmotic response" evidence=RCA
GO:0007030 "Golgi organization" evidence=RCA
GO:0009266 "response to temperature stimulus" evidence=RCA
GO:0009733 "response to auxin stimulus" evidence=RCA
GO:0009845 "seed germination" evidence=RCA
GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA
GO:0010162 "seed dormancy process" evidence=RCA
GO:0010325 "raffinose family oligosaccharide biosynthetic process" evidence=RCA
GO:0032880 "regulation of protein localization" evidence=RCA
GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA
GO:0046686 "response to cadmium ion" evidence=RCA
GO:0048444 "floral organ morphogenesis" evidence=RCA
GO:0009938 "negative regulation of gibberellic acid mediated signaling pathway" evidence=IGI
TAIR|locus:2006747 GAI "GIBBERELLIC ACID INSENSITIVE" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2099624 RGL2 "RGA-like 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2201557 RGL1 "RGA-like 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2157477 RGL3 "RGA-like protein 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2164783 PAT1 "AT5G48150" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2044973 SCL21 "AT2G04890" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008076 SCL5 "AT1G50600" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2015243 AT1G63100 "AT1G63100" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2026982 SCL1 "AT1G21450" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q84TQ7GAI_GOSHINo assigned EC number0.50090.94720.9366N/Ano
Q9LQT8GAI_ARATHNo assigned EC number0.50580.90390.9005yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GAI
GAI (GIBBERELLIC ACID INSENSITIVE); transcription factor; Similar to a putative transcription factor and transcriptional coactivators. Repressor of GA responses and involved in gibberellic acid mediated signaling. Member of the DELLA proteins that restrain the cell proliferation and expansion that drives plant growth. The protein undergoes degradation in response to GA via the 26S proteasome. GAI may be involved in reducing ROS accumulation in response to stress by up-regulating the transcription of superoxide dismutases. Represses GA-induced vegetative growth and floral initiation. Ra [...] (533 aa)
(Arabidopsis thaliana)
Predicted Functional Partners:
GID1A
GID1A (GA INSENSITIVE DWARF1A); hydrolase; Encodes a gibberellin (GA) receptor ortholog of the [...] (345 aa)
    • • 0.999
GID1B
GID1B (GA INSENSITIVE DWARF1B); hydrolase; Encodes a gibberellin (GA) receptor ortholog of the [...] (358 aa)
    • • 0.999
GID1C
GID1C (GA INSENSITIVE DWARF1C); hydrolase; Encodes a gibberellin (GA) receptor ortholog of the [...] (344 aa)
    • • 0.999
SLY1
SLY1 (SLEEPY1); F-box protein that is involved in GA signaling. Regulates seed germination. Com [...] (151 aa)
    • • 0.998
SPY
SPY (SPINDLY); protein N-acetylglucosaminyltransferase/ protein binding / transferase, transfer [...] (914 aa)
      • 0.983
PHYA
PHYA (PHYTOCHROME A); G-protein coupled photoreceptor/ protein histidine kinase/ red or far-red [...] (1122 aa)
   •• • 0.940
PIF3
PIF3 (PHYTOCHROME INTERACTING FACTOR 3); DNA binding / protein binding / transcription factor/ [...] (524 aa)
    • • 0.926
GA3OX1
GA3OX1 (GIBBERELLIN 3-OXIDASE 1); gibberellin 3-beta-dioxygenase/ transcription factor binding; [...] (358 aa)
      • 0.891
GA3
GA3 (GA REQUIRING 3); ent-kaurene oxidase/ oxygen binding; Encodes a member of the CYP701A cyto [...] (509 aa)
      • 0.881
BZR1
BZR1 (BRASSINAZOLE-RESISTANT 1); DNA binding / transcription regulator/ transcription repressor [...] (336 aa)
    • • 0.877

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query531
pfam03514372 pfam03514, GRAS, GRAS family transcription factor 1e-153
pfam1204174 pfam12041, DELLA, Transcriptional regulator DELLA 6e-30
>gnl|CDD|217595 pfam03514, GRAS, GRAS family transcription factor Back     alignment and domain information 
 Score =  443 bits (1141), Expect = e-153
 Identities = 182/376 (48%), Positives = 236/376 (62%), Gaps = 19/376 (5%)

Query: 156 LVHMLMTCAESVQRGEMAVAGSLIEDMKGLLTRVNPSC-GIGKVAGCFIDALSFRIMGVG 214
           LVH+L+ CAE+V  G++++A +++     L    +P+   + ++A  F +AL+ R+   G
Sbjct: 1   LVHLLLACAEAVSSGDLSLAQAILAR---LNQLASPAGDPMQRLAAYFTEALAARLARSG 57

Query: 215 GSICGS----------VSENEILYHHFYEACPYLKFAHFTANQAILEAFDGHDCVHVVDF 264
            SI  +            E    Y  FYE  PYLKF HFTANQAILEAF+G + VH++DF
Sbjct: 58  SSIYSALPPSPSTPSDSVEVLAAYKLFYEVSPYLKFGHFTANQAILEAFEGEERVHIIDF 117

Query: 265 NLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLRLAELARSVNIRFT 324
           ++  GLQWP+LIQALA RPGGPP LR+TGIG P     + L E G RLA+ A S+ + F 
Sbjct: 118 DIGQGLQWPSLIQALASRPGGPPHLRITGIGSPQFSSAEELEETGDRLAQFADSLGVPFE 177

Query: 325 FRGVAASRLEDVKPWMLQVSPKEALAVNSILQLHKLLGSDPARNSPMEMVLGWIRNLNPK 384
           F  + A RLED+   ML V P EALAVN +  LH+LL    +  SP    L  +++LNPK
Sbjct: 178 FNPLVAKRLEDLDLEMLDVRPGEALAVNCVFALHRLLDESVSLESP--TFLRLVKSLNPK 235

Query: 385 IMTVVEQESNHNQPEFLDRFTTALYYYSTMFDSLEA--CPLQPEKALAE-IYLQREICNV 441
           ++T+VEQE+NHN   FL RF  AL+YYS +FDSLEA       E+   E   L REI NV
Sbjct: 236 VVTLVEQEANHNSAPFLARFVEALHYYSALFDSLEATLPRDSEERRKVERELLGREIVNV 295

Query: 442 VCCEGSARVERHEPLAKWRNRLAGAGFRPLHLGSNAFRQASMLLTLFSAEGYSVEETEGC 501
           V CEG+ RVERHE   KWR R+  AGFRP+ L   A +QA +LL L+  +GY VEE  G 
Sbjct: 296 VACEGAERVERHETFGKWRERMRRAGFRPVPLSEFAVKQAKLLLRLYYVDGYRVEEDNGS 355

Query: 502 LTLGWHSRPLIAASAW 517
           L LGW  RPL+AASAW
Sbjct: 356 LVLGWKGRPLVAASAW 371

Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable amino-terminus and a highly conserved carboxyl-terminus that contains five recognisable motifs. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction. Length = 372
>gnl|CDD|221390 pfam12041, DELLA, Transcriptional regulator DELLA protein N terminal Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 531
PF03514374 GRAS: GRAS domain family; InterPro: IPR005202 Sequ 100.0
PF1204173 DELLA: Transcriptional regulator DELLA protein N t 100.0
PRK15451247 tRNA cmo(5)U34 methyltransferase; Provisional 97.32
TIGR00740239 methyltransferase, putative. A simple BLAST search 96.42
TIGR02716306 C20_methyl_CrtF C-20 methyltransferase BchU. Membe 95.82
TIGR02752231 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me 95.05
PLN02233261 ubiquinone biosynthesis methyltransferase 94.45
PRK14103255 trans-aconitate 2-methyltransferase; Provisional 93.96
PRK06202232 hypothetical protein; Provisional 92.7
PF13489161 Methyltransf_23: Methyltransferase domain; PDB: 3J 92.28
PTZ00098263 phosphoethanolamine N-methyltransferase; Provision 91.89
PF01209233 Ubie_methyltran: ubiE/COQ5 methyltransferase famil 91.53
COG2226238 UbiE Methylase involved in ubiquinone/menaquinone 91.49
PLN02336475 phosphoethanolamine N-methyltransferase 90.31
PRK08317241 hypothetical protein; Provisional 90.01
TIGR01934223 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis 89.68
PRK00216239 ubiE ubiquinone/menaquinone biosynthesis methyltra 89.25
PLN02396322 hexaprenyldihydroxybenzoate methyltransferase 89.24
PF12847112 Methyltransf_18: Methyltransferase domain; PDB: 3G 87.78
PLN02585315 magnesium protoporphyrin IX methyltransferase 86.75
PF09243274 Rsm22: Mitochondrial small ribosomal subunit Rsm22 85.87
PLN02336 475 phosphoethanolamine N-methyltransferase 85.14
smart00138264 MeTrc Methyltransferase, chemotaxis proteins. Meth 84.74
TIGR00477195 tehB tellurite resistance protein TehB. Part of a 82.88
PRK12335287 tellurite resistance protein TehB; Provisional 82.81
PF13649101 Methyltransf_25: Methyltransferase domain; PDB: 3B 82.13
PF03291331 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 81.54
PF13847152 Methyltransf_31: Methyltransferase domain; PDB: 3T 81.42
PRK05134233 bifunctional 3-demethylubiquinone-9 3-methyltransf 81.32
PRK05785226 hypothetical protein; Provisional 81.17
TIGR03438301 probable methyltransferase. This model represents 81.09
TIGR02072240 BioC biotin biosynthesis protein BioC. This enzyme 80.59
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs [] Back     alignment and domain information 
Probab=100.00  E-value=1.2e-110  Score=880.45  Aligned_cols=359  Identities=52%  Similarity=0.911  Sum_probs=336.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhccCCCCCc--chHHHHHHHHHHHHhhccCCCCcc-----CC-----Cch
Q 009607          156 LVHMLMTCAESVQRGEMAVAGSLIEDMKGLLTRVNPSCG--IGKVAGCFIDALSFRIMGVGGSIC-----GS-----VSE  223 (531)
Q Consensus       156 Lv~lLl~CAeAV~~gd~~~A~~lL~~i~~las~~~s~~G--~qRlA~yFaeAL~~Rl~~~~~~~~-----~~-----~~~  223 (531)
                      |++||++||+||+.||...|+.+|++|+++++    +.|  +||||+||++||.+||.+.++..+     ..     ...
T Consensus         1 L~~lLl~cA~Av~~~~~~~A~~lL~~l~~~as----~~g~~~qRla~yF~eAL~~Rl~~~~~~~~~~~~~~~~~~~~~~~   76 (374)
T PF03514_consen    1 LVQLLLACAEAVAAGDFARAQELLARLRQLAS----PTGDPMQRLAAYFAEALAARLSGSGPGLYSALPPSSPSPSESSE   76 (374)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC----CCCCHHHHHHHHHHhhHHHHHhccCcccccCCCCccccccchHH
Confidence            68999999999999999999999999999975    566  999999999999999999654321     11     111


Q ss_pred             HHHHHHHHHhhCChhhhHHHHHHHHHHhhhCCCceeEEEEcccCCCCchHHHHHHHhcCCCCCCeEEEEEeCCCCCCChh
Q 009607          224 NEILYHHFYEACPYLKFAHFTANQAILEAFDGHDCVHVVDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRD  303 (531)
Q Consensus       224 ~~~~~~~f~e~~P~~kFahftANqAILEA~~g~~~VHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~p~~~~~~  303 (531)
                      ...+|+.||+.|||+||||||||||||||++|+++||||||||++|+|||+|||+||.|++|||+||||||++|.++..+
T Consensus        77 ~~~a~~~~~~~~P~~~fa~~taNqaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~  156 (374)
T PF03514_consen   77 QLAAYQLFYELSPFLKFAHFTANQAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSAD  156 (374)
T ss_pred             HHHHHHHHHHHhhHHhhhhhchhHHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHH
Confidence            22358999999999999999999999999999999999999999999999999999999999999999999999888889


Q ss_pred             HHHHHHHHHHHHHHhCCceEEEEEeccCCcccccccccccCCCCeEEeehHHHhhhhcCCCCCCCChHHHHHHHHHhcCC
Q 009607          304 SLREIGLRLAELARSVNIRFTFRGVAASRLEDVKPWMLQVSPKEALAVNSILQLHKLLGSDPARNSPMEMVLGWIRNLNP  383 (531)
Q Consensus       304 ~L~etG~rL~~fA~~lgvpFeF~~v~~~~ledl~~~~L~i~~gEaLaVN~~f~LH~L~~e~~~~~~~~~~vL~~Ir~L~P  383 (531)
                      .+++||+||++||+++||||||++|...++|++++++|++++||+|||||+|+||||++++....++++.||+.||+|+|
T Consensus       157 ~l~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P  236 (374)
T PF03514_consen  157 ELQETGRRLAEFARSLGVPFEFHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNP  236 (374)
T ss_pred             HHHHHHHHHHHHHHHcCccEEEEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCC
Confidence            99999999999999999999999988889999999999999999999999999999998877777899999999999999


Q ss_pred             cEEEEEecCCCCCCcchHHHHHHHHHHHHHHhhhhhcCC--CCHHHHHHHH-HHhhhhhhhhhccCCCccccccchhhHH
Q 009607          384 KIMTVVEQESNHNQPEFLDRFTTALYYYSTMFDSLEACP--LQPEKALAEI-YLQREICNVVCCEGSARVERHEPLAKWR  460 (531)
Q Consensus       384 kIvtlvEqEanhN~p~F~~RF~eAL~yYsalFDSLea~~--~s~er~~~E~-~lgreI~NiVAcEG~~RvERhE~~~~Wr  460 (531)
                      +|||++|+|+|||+|+|++||.|||+||+++|||||++.  .+.+|..+|+ +||++|+|||||||.+|+||||++++|+
T Consensus       237 ~vvv~~E~ea~~n~~~F~~RF~eal~yYsalfdsle~~~~~~~~~r~~~E~~~~~~eI~niVa~eg~~R~eR~e~~~~W~  316 (374)
T PF03514_consen  237 KVVVLVEQEADHNSPSFLERFREALHYYSALFDSLEACLPRDSEERLAVERLFFGREIMNIVACEGEERVERHERLEQWR  316 (374)
T ss_pred             CEEEEEeecCCCCCCchHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhHHHHhhhcccccccccccchhHHH
Confidence            999999999999999999999999999999999999985  5678877675 6999999999999999999999999999


Q ss_pred             HHHhcCCceeccCChHHHHHHHHHHhhcCCCCceEEecCCEEEEeeCCceeEEEecce
Q 009607          461 NRLAGAGFRPLHLGSNAFRQASMLLTLFSAEGYSVEETEGCLTLGWHSRPLIAASAWH  518 (531)
Q Consensus       461 ~rm~~AGF~~vpls~~a~~qAk~Ll~~~~~~gy~v~e~~g~L~LgWk~rpL~aaSAWr  518 (531)
                      .||.+|||+++|+|++++.|||+||++|+++||+|++++|||+||||++||+++||||
T Consensus       317 ~r~~~aGF~~~~ls~~~~~qa~~ll~~~~~~g~~v~~~~~~l~L~Wk~~pL~~~SaWr  374 (374)
T PF03514_consen  317 RRMRRAGFRPVPLSEFAVSQAKLLLRKFPGDGYTVEEDGGCLLLGWKGRPLVAASAWR  374 (374)
T ss_pred             HHHHhcCCeecCCCHHHHHHHHHHHhccCCCCeEEEEcCCEEEEEeCCcEEEEEeCcC
Confidence            9999999999999999999999999999888999999999999999999999999997

Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
>PF12041 DELLA: Transcriptional regulator DELLA protein N terminal; InterPro: IPR021914 Gibberellins are plant hormones which have great impact on growth signalling Back     alignment and domain information
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional Back     alignment and domain information
>TIGR00740 methyltransferase, putative Back     alignment and domain information
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU Back     alignment and domain information
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase Back     alignment and domain information
>PLN02233 ubiquinone biosynthesis methyltransferase Back     alignment and domain information
>PRK14103 trans-aconitate 2-methyltransferase; Provisional Back     alignment and domain information
>PRK06202 hypothetical protein; Provisional Back     alignment and domain information
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C Back     alignment and domain information
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional Back     alignment and domain information
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] Back     alignment and domain information
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] Back     alignment and domain information
>PLN02336 phosphoethanolamine N-methyltransferase Back     alignment and domain information
>PRK08317 hypothetical protein; Provisional Back     alignment and domain information
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases Back     alignment and domain information
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed Back     alignment and domain information
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase Back     alignment and domain information
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A Back     alignment and domain information
>PLN02585 magnesium protoporphyrin IX methyltransferase Back     alignment and domain information
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>PLN02336 phosphoethanolamine N-methyltransferase Back     alignment and domain information
>smart00138 MeTrc Methyltransferase, chemotaxis proteins Back     alignment and domain information
>TIGR00477 tehB tellurite resistance protein TehB Back     alignment and domain information
>PRK12335 tellurite resistance protein TehB; Provisional Back     alignment and domain information
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A Back     alignment and domain information
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes Back     alignment and domain information
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A Back     alignment and domain information
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional Back     alignment and domain information
>PRK05785 hypothetical protein; Provisional Back     alignment and domain information
>TIGR03438 probable methyltransferase Back     alignment and domain information
>TIGR02072 BioC biotin biosynthesis protein BioC Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query531
2zsh_B110 Structural Basis Of Gibberellin(Ga3)-Induced Della 3e-15
>pdb|2ZSH|B Chain B, Structural Basis Of Gibberellin(Ga3)-Induced Della Recognition By The Gibberellin Receptor Length = 110 Back     alignment and structure 
Iteration: 1

 Score = 80.1 bits (196), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 38/66 (57%), Positives = 53/66 (80%), Gaps = 1/66 (1%)
Query: 30 IDGLLAGAGYKVRSSELRQVAQRLERLETVMVN-SPADISQLASDTVHYNPSDLASWVDS 88
          +D LLA  GYKVRSSE+  VAQ+LE+LE +M N    D+SQLA++TVHYNP++L +W+DS
Sbjct: 24 MDELLAVLGYKVRSSEMADVAQKLEQLEVMMSNVQEDDLSQLATETVHYNPAELYTWLDS 83
Query: 89 LLSEFN 94
          +L++ N
Sbjct: 84 MLTDLN 89

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query531
2zsh_B110 Della protein GAI; plant hormone receptor, gibbere 9e-34
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-07
>2zsh_B Della protein GAI; plant hormone receptor, gibberellin, gibberellin signaling pathway, hydrolase, nucleus, receptor, developmental protein; HET: GA3; 1.80A {Arabidopsis thaliana} PDB: 2zsi_B* Length = 110 Back     alignment and structure
 Score =  122 bits (308), Expect = 9e-34
 Identities = 42/108 (38%), Positives = 60/108 (55%), Gaps = 1/108 (0%)

Query: 8   TSGGSNSGSSSSCSGTKQPVAEIDGLLAGAGYKVRSSELRQVAQRLERLETVMVNSPAD- 66
                     +     +     +D LLA  GYKVRSSE+  VAQ+LE+LE +M N   D 
Sbjct: 2   PGYNEPQDKKTMMMNEEDDGNGMDELLAVLGYKVRSSEMADVAQKLEQLEVMMSNVQEDD 61

Query: 67  ISQLASDTVHYNPSDLASWVDSLLSEFNQPPLPLPSDLPDLPDIIAGP 114
           +SQLA++TVHYNP++L +W+DS+L++ N P      DL  +P      
Sbjct: 62  LSQLATETVHYNPAELYTWLDSMLTDLNPPSSNAEYDLKAIPGDAILN 109
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query531
2zsh_B110 Della protein GAI; plant hormone receptor, gibbere 100.0
4gek_A261 TRNA (CMO5U34)-methyltransferase; structural genom 97.19
3bkx_A275 SAM-dependent methyltransferase; YP_807781.1, cycl 96.25
4a6d_A353 Hydroxyindole O-methyltransferase; melatonin, circ 96.01
3dtn_A234 Putative methyltransferase MM_2633; structural gen 95.91
3dlc_A219 Putative S-adenosyl-L-methionine-dependent methylt 95.7
2aot_A292 HMT, histamine N-methyltransferase; classic methyl 95.31
3dh0_A219 SAM dependent methyltransferase; cystal structure, 95.25
2ip2_A334 Probable phenazine-specific methyltransferase; pyo 95.2
1vl5_A260 Unknown conserved protein BH2331; putative methylt 95.02
1qzz_A374 RDMB, aclacinomycin-10-hydroxylase; anthracycline, 94.76
2r3s_A335 Uncharacterized protein; methyltransferase domain, 94.61
1x19_A359 CRTF-related protein; methyltransferase, bacterioc 94.57
3mcz_A352 O-methyltransferase; adomet_mtases, S-adenosylmeth 94.52
3gwz_A369 MMCR; methyltransferase, mitomycin, S-adenosyl met 94.36
3i53_A332 O-methyltransferase; CO-complex, rossmann-like fol 94.33
3mgg_A276 Methyltransferase; NYSGXRC, PSI-II, protein struct 94.23
3sm3_A235 SAM-dependent methyltransferases; NESG, structural 94.0
3dp7_A363 SAM-dependent methyltransferase; structural genomi 93.9
3ujc_A266 Phosphoethanolamine N-methyltransferase; parasite; 93.78
1xxl_A239 YCGJ protein; structural genomics, protein structu 93.54
3kkz_A267 Uncharacterized protein Q5LES9; putative methyltra 93.35
3f4k_A257 Putative methyltransferase; structural genomics, P 93.32
3ccf_A279 Cyclopropane-fatty-acyl-phospholipid synthase; YP_ 92.83
4fsd_A383 Arsenic methyltransferase; rossmann fold; 1.75A {C 92.81
3lst_A348 CALO1 methyltransferase; calicheamicin, enediyne, 92.72
3htx_A950 HEN1; HEN1, small RNA methyltransferase, protein-R 92.48
1tw3_A360 COMT, carminomycin 4-O-methyltransferase; anthracy 92.34
3h2b_A203 SAM-dependent methyltransferase; alpha-beta protei 91.58
3vc1_A312 Geranyl diphosphate 2-C-methyltransferase; rossman 91.58
3bus_A273 REBM, methyltransferase; rebeccamycin synthesis; H 91.49
3hnr_A220 Probable methyltransferase BT9727_4108; structural 91.06
3reo_A368 (ISO)eugenol O-methyltransferase; directed evoluti 91.02
1xtp_A254 LMAJ004091AAA; SGPP, structural genomics, PSI, pro 90.93
4htf_A285 S-adenosylmethionine-dependent methyltransferase; 90.78
3p9c_A364 Caffeic acid O-methyltransferase; S-adenosylmethio 90.39
3l8d_A242 Methyltransferase; structural genomics, PSI, nysgr 89.83
3e23_A211 Uncharacterized protein RPA2492; alpha-beta protei 89.55
2fk8_A318 Methoxy mycolic acid synthase 4; S-adenosylmethion 87.66
1fp2_A352 Isoflavone O-methyltransferase; protein-product co 87.63
2p35_A259 Trans-aconitate 2-methyltransferase; SAM dependent 86.76
3g5l_A253 Putative S-adenosylmethionine dependent methyltran 86.63
2qe6_A274 Uncharacterized protein TFU_2867; putative methylt 86.34
3dli_A240 Methyltransferase; PSI-II, NYSGXRC, structural gen 86.21
3jwg_A219 HEN1, methyltransferase type 12; 1.90A {Clostridiu 86.15
3m70_A286 Tellurite resistance protein TEHB homolog; structu 85.91
2o57_A297 Putative sarcosine dimethylglycine methyltransfera 85.45
3lcc_A235 Putative methyl chloride transferase; halide methy 85.34
3gu3_A284 Methyltransferase; alpha-beta protein, structural 85.17
4e2x_A416 TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s 84.2
3ege_A261 Putative methyltransferase from antibiotic biosyn 83.68
1kpg_A287 CFA synthase;, cyclopropane-fatty-acyl-phospholipi 83.23
2vdw_A302 Vaccinia virus capping enzyme D1 subunit; nucleoti 83.02
3lcv_B281 Sisomicin-gentamicin resistance methylase SGM; ant 82.97
3ocj_A305 Putative exported protein; structural genomics, PS 82.92
1ve3_A227 Hypothetical protein PH0226; dimer, riken structur 82.47
1zg3_A358 Isoflavanone 4'-O-methyltransferase; rossman fold, 82.43
3ofk_A216 Nodulation protein S; NODS, N-methyltransferase, S 82.35
3hem_A302 Cyclopropane-fatty-acyl-phospholipid synthase 2; p 82.32
3frh_A253 16S rRNA methylase; methyltransferase domain, heli 81.8
1nkv_A256 Hypothetical protein YJHP; structural genomics, PS 81.57
3jwh_A217 HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena 81.43
2xvm_A199 Tellurite resistance protein TEHB; antibiotic resi 80.93
3fzg_A200 16S rRNA methylase; methyltransferase, plasmid, tr 80.74
>2zsh_B Della protein GAI; plant hormone receptor, gibberellin, gibberellin signaling pathway, hydrolase, nucleus, receptor, developmental protein; HET: GA3; 1.80A {Arabidopsis thaliana} PDB: 2zsi_B* Back     alignment and structure
Probab=100.00  E-value=8.3e-44  Score=304.68  Aligned_cols=90  Identities=44%  Similarity=0.710  Sum_probs=58.7

Q ss_pred             CccchhhhhhhcCCcccchhHHHHHHHHHHHHHHhhCCccc-cccccccccccCCCchhhHHHHhhhccCCCCCCCCCCC
Q 009607           26 PVAEIDGLLAGAGYKVRSSELRQVAQRLERLETVMVNSPAD-ISQLASDTVHYNPSDLASWVDSLLSEFNQPPLPLPSDL  104 (531)
Q Consensus        26 ~~~~~d~~l~~~~~~~~~~~~~~~~~~le~le~~~~~~~~~-~~~~~~dtvh~npsd~~~w~~~~~~e~~~~~~~~~~~~  104 (531)
                      ..+|||||||++|||||||||++|||||||||+||||+++| +|||||||||||||||++||||||+|||||.       
T Consensus        20 ~~~g~DelLA~lGYkVrsSDma~vAQkLEqLE~vmg~a~~dgls~LasDTVHyNPSDLs~WvesMLsEln~~~-------   92 (110)
T 2zsh_B           20 DGNGMDELLAVLGYKVRSSEMADVAQKLEQLEVMMSNVQEDDLSQLATETVHYNPAELYTWLDSMLTDLNPPS-------   92 (110)
T ss_dssp             ---CBCHHHHTTTCBCBGGGHHHHHHHHHHHHHHHTTC-------CHHHHTTSCTTBHHHHHHHHHHTC-----------
T ss_pred             ccccHHHHHHHcCccccchhHHHHHHHHHHHHHHHccccchhHHHhhhhhhcCChHHHHHHHHHHHHHcCCCC-------
Confidence            45789999999999999999999999999999999999999 9999999999999999999999999999752       


Q ss_pred             CCCCCCCCCCCcccccCCCcccCC
Q 009607          105 PDLPDIIAGPSVNHTAVGNYLTDN  128 (531)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~  128 (531)
                         ++++||   |+||||+|+|++
T Consensus        93 ---~~~~yd---L~aIpg~a~y~~  110 (110)
T 2zsh_B           93 ---SNAEYD---LKAIPGDAILNQ  110 (110)
T ss_dssp             ------------------------
T ss_pred             ---Cccccc---hhcCCcccccCC
Confidence               145689   999999999963
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* Back     alignment and structure
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Back     alignment and structure
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* Back     alignment and structure
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Back     alignment and structure
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Back     alignment and structure
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Back     alignment and structure
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Back     alignment and structure
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} Back     alignment and structure
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Back     alignment and structure
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* Back     alignment and structure
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Back     alignment and structure
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Back     alignment and structure
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Back     alignment and structure
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* Back     alignment and structure
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Back     alignment and structure
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Back     alignment and structure
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Back     alignment and structure
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Back     alignment and structure
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Back     alignment and structure
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Back     alignment and structure
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Back     alignment and structure
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Back     alignment and structure
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Back     alignment and structure
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Back     alignment and structure
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} Back     alignment and structure
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Back     alignment and structure
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* Back     alignment and structure
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Back     alignment and structure
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* Back     alignment and structure
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Back     alignment and structure
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Back     alignment and structure
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* Back     alignment and structure
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Back     alignment and structure
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} Back     alignment and structure
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* Back     alignment and structure
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} Back     alignment and structure
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Back     alignment and structure
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* Back     alignment and structure
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* Back     alignment and structure
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Back     alignment and structure
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Back     alignment and structure
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} Back     alignment and structure
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Back     alignment and structure
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Back     alignment and structure
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Back     alignment and structure
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Back     alignment and structure
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Back     alignment and structure
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A Back     alignment and structure
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* Back     alignment and structure
>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Back     alignment and structure
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* Back     alignment and structure
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} Back     alignment and structure
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* Back     alignment and structure
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Back     alignment and structure
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Back     alignment and structure
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* Back     alignment and structure
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Back     alignment and structure
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* Back     alignment and structure
>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* Back     alignment and structure
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Back     alignment and structure
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Back     alignment and structure
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Back     alignment and structure
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query531
d1im8a_225 Hypothetical protein HI0319 (YecO) {Haemophilus in 97.31
d1tw3a2253 Carminomycin 4-O-methyltransferase {Streptomyces p 97.05
d1qzza2256 Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu 96.96
d1fp2a2244 Isoflavone O-methyltransferase {Alfalfa (Medicago 95.25
d1vlma_208 Possible histamine N-methyltransferase TM1293 {The 95.24
d1nkva_245 Hypothetical Protein YjhP {Escherichia coli [TaxId 94.97
d1fp1d2244 Chalcone O-methyltransferase {Alfalfa (Medicago sa 94.91
d1xxla_234 Hypothetical protein YcgJ {Bacillus subtilis [TaxI 94.86
d1jqea_280 Histamine methyltransferase {Human (Homo sapiens) 94.77
d1vl5a_231 Hypothetical protein BH2331 {Bacillus halodurans [ 94.73
d2i6ga1198 Putative methyltransferase TehB {Salmonella typhim 92.81
d2ex4a1222 Adrenal gland protein AD-003 (C9orf32) {Human (Hom 92.26
d1ri5a_252 mRNA cap (Guanine N-7) methyltransferase {Fungus ( 91.72
d1ve3a1226 Hypothetical protein PH0226 {Archaeon Pyrococcus h 89.69
d2o57a1282 Putative sarcosine dimethylglycine methyltransfera 89.13
d1y8ca_246 Putative methyltransferase CAC2371 {Clostridium ac 89.0
d2fk8a1280 Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri 87.2
d2gh1a1281 Methyltransferase BC2162 {Bacillus cereus [TaxId: 84.76
d1wzna1251 Hypothetical methyltransferase PH1305 {Archaeon Py 83.09
d2avna1246 Hypothetical methyltransferase TM1389 {Thermotoga 82.97
d1kyza2243 Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra 81.33
>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=97.31  E-value=0.003  Score=57.63  Aligned_cols=106  Identities=19%  Similarity=0.164  Sum_probs=63.2

Q ss_pred             ceeEEEEcccCCCCchHHHHHHHhcCCCCCCeEEEEEeCCCCCCChhHHHHHHHHHHHHHHhCCceEEEEEeccCCcccc
Q 009607          257 DCVHVVDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLRLAELARSVNIRFTFRGVAASRLEDV  336 (531)
Q Consensus       257 ~~VHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~~lgvpFeF~~v~~~~ledl  336 (531)
                      ..-||+|+|.|.|.    +...|+... ..|..++|||+...    ..++...+++.+..  ....+++.  .. ...++
T Consensus        39 ~~~~vLDlGCGtG~----~~~~l~~~~-~~~~~~v~giD~S~----~ml~~A~~~~~~~~--~~~~~~~~--~~-d~~~~  104 (225)
T d1im8a_          39 ADSNVYDLGCSRGA----ATLSARRNI-NQPNVKIIGIDNSQ----PMVERCRQHIAAYH--SEIPVEIL--CN-DIRHV  104 (225)
T ss_dssp             TTCEEEEESCTTCH----HHHHHHHTC-CCSSCEEEEECSCH----HHHHHHHHHHHTSC--CSSCEEEE--CS-CTTTC
T ss_pred             CCCEEEEeccchhh----HHHHHHHhh-cCCCCceEEeCCCH----HHHHHHHHHhHhhc--ccchhhhc--cc-hhhcc
Confidence            44589999999884    344455432 24678999998753    55666655554221  33444443  22 22222


Q ss_pred             cccccccCCCCeEEeehHHHhhhhcCCCCCCCChHHHHHHHH-HhcCCcEEEEE
Q 009607          337 KPWMLQVSPKEALAVNSILQLHKLLGSDPARNSPMEMVLGWI-RNLNPKIMTVV  389 (531)
Q Consensus       337 ~~~~L~i~~gEaLaVN~~f~LH~L~~e~~~~~~~~~~vL~~I-r~L~PkIvtlv  389 (531)
                             ..+..-+|-|.+.||++..      .....+|+.| |.|+|.-..+.
T Consensus       105 -------~~~~~d~i~~~~~l~~~~~------~d~~~~l~~i~~~LkpgG~li~  145 (225)
T d1im8a_         105 -------EIKNASMVILNFTLQFLPP------EDRIALLTKIYEGLNPNGVLVL  145 (225)
T ss_dssp             -------CCCSEEEEEEESCGGGSCG------GGHHHHHHHHHHHEEEEEEEEE
T ss_pred             -------ccccceeeEEeeeccccCh------hhHHHHHHHHHHhCCCCceeec
Confidence                   2234445556667888743      3466788777 66899886554
>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Back     information, alignment and structure
>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Back     information, alignment and structure
>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Back     information, alignment and structure
>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Back     information, alignment and structure
>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Back     information, alignment and structure
>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} Back     information, alignment and structure
>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Back     information, alignment and structure
>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Back     information, alignment and structure