Citrus Sinensis ID: 009671

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------53

MGQSASTAAISSRREFNHSQRYKSKSTAVISPMHADESSAELPDGTAYDYISNLPDECLACIFQSLSSGDRKRCSLVCRRWLRIEGQSRHRLSLNAQSELLPMIPSLFSRFDVVTKLALKCDRRSVSVGDDALILISQKCRNLTRLKLRACRELTDAGMSVFAKNCKGLKKLSCGSCTFGAKGMNAVLDNCSTLEELSVKRLRGITDGAAAEPIGPGVAASSLKTVCLKELYNGQCFGPLIIGAKNLRTLKLFRCSGDWDKLLQLVTDRVTSLVEIHLERIQVTDVGLAAISNCLDLEIMHLVKTPECTNLGLAAVAERCKLLRKLHIDGWKANRIGDEGLIAVAKCCPNLQELVLIGVNPTRVSLEVLASNCQNLERLALCGSDTVGDVEISCIAAKCVALKKLCIKSCPVSDHGMEALAGGCPNLVKVKVKKCRAVTTEGADWLRARREYVVVNLDSGEAEHQDASDGGVQENGIEFPPQMVQPSVASSRNTRSTSFKTRLGLLSGRSLVACTLRRWSSGNSSSRNS

cccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccEEEEcccccccccHHHHHcccccccEEEEEcccccccccHHHHHHHHHccccccEEEEEccccccHHHHHHHHHccccccEEEcccccccHHHHHHHHHccccccEEEccccccccHHHHHcccccccccccccccccccccccccHHHHHHccccccEEEccccccccHHHHHHHHHccccccEEEcccccccHHHHHHHcccccccEEEEccccccccHHHHHHHHccccccEEEEEccccccccHHHHHHHHHccccccEEEEccccccHHHHHHHHHccccccEEEccccccccHHHHHHHHHccccccEEEEccccccHHHHHHHHHccccccEEEEEccccccHHHHHHHHHccccEEEEEEccccccccccHHHHHHcccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccc

ccccccccccccHHHccccccccccccccccccccccHccccccccccHHHHHccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccEEEccccHHccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccccEEEccccccccHHHHHHHHHHcccccEEEcccccccHHHHHHHHHHcccHcEEEccccccccHHHHHHHHcccccHHHHHHHcccccccHHHHHHHHHcccccEEEEEcccccccHHHHHHHHHHccccEEEEEEcccccHHHHHHHHccccccEEEEcccccccHHHHHHHHHccccccEEEEEccccccccHHHHHHHHHHcccccEEEEccccccHHHHHHHHHHcccccEEEccccccccHHHHHHHHHccccccEEEEccccccHHHHHHHHHHccccEEEEEcccHHccHHHHHHHHHHcccEEEEccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccHHHHEEEccccccccccc

MGQSASTAAISSRRefnhsqrykskstavispmhadessaelpdgtaydyisnlPDECLACIFQslssgdrkrcSLVCRRWLRIegqsrhrlslnaqsellpmipslfsRFDVVTKLAlkcdrrsvsvgdDALILISQKCRNLTRLKLRACRELTDAGMSVFAKNckglkklscgsctfgakgmnavldncstLEELSVKRLRgitdgaaaepigpgvaasslKTVCLKElyngqcfgpliigaknlrTLKLFRCSGDWDKLLQLVTDRVTSLVEIHLERIQVTDVGLAAISNCLDLEIMHlvktpectnlGLAAVAERCKLLRKLHIDgwkanrigdEGLIAVAKCCPNLQELVLIGVNPTRVSLEVLASNCQNLERLalcgsdtvgdVEISCIAAKCVALKKLcikscpvsdhgmealaggcpnlvKVKVKKCRAVTTEGADWLRARREYVVVNldsgeaehqdasdggvqengiefppqmvqpsvassrntrstsfKTRLGLLSGRSLVACTlrrwssgnsssrns

mgqsastaaissrrefnhsqrykskstavispmhadessaelpDGTAYDYISNLPDECLACIFQslssgdrkrCSLVCRRWLriegqsrhrlslnaqSELLPMIPSLFSRFDVVTKLALKcdrrsvsvgddalilisqkcrnltrLKLRACRELTDAGMSVFAKNCKGLKKLSCGSCTFGAKGMNAVLDNCSTLEELSVKRLRGITDgaaaepigpgvAASSLKTVCLKELYNGQCFGPLIIGAKNLRTLKLFRCSGDWDKLLQLVTDRVTSLVEIHleriqvtdvGLAAISNCLDLEIMHLVKTPECTNLGLAAVAERCKLLRKLHIDGWKANRIGDEGLIAVAKCCPNLQELVLIGVNPTRVSLEVLASNCQNLERLALCGSDTVGDVEISCIAAKCVALKKLCIKSCPVSDHGMEAlaggcpnlvkvKVKKCRAVTtegadwlraRREYVVVNLDSGEAEHQDASDGGVQENGIEFPPQMVQpsvassrntrstsfktrlgllsgrslvactlrrwssgnsssrns

*********************************************TAYDYISNLPDECLACIFQSLSSGDRKRCSLVCRRWLRIEGQSRHRLSLNAQSELLPMIPSLFSRFDVVTKLALKCDRRSVSVGDDALILISQKCRNLTRLKLRACRELTDAGMSVFAKNCKGLKKLSCGSCTFGAKGMNAVLDNCSTLEELSVKRLRGITDGAAAEPIGPGVAASSLKTVCLKELYNGQCFGPLIIGAKNLRTLKLFRCSGDWDKLLQLVTDRVTSLVEIHLERIQVTDVGLAAISNCLDLEIMHLVKTPECTNLGLAAVAERCKLLRKLHIDGWKANRIGDEGLIAVAKCCPNLQELVLIGVNPTRVSLEVLASNCQNLERLALCGSDTVGDVEISCIAAKCVALKKLCIKSCPVSDHGMEALAGGCPNLVKVKVKKCRAVTTEGADWLRARREYVVVNL********************************************RLGLLSGRSLVACTLRRW**********

**************************************************ISNLPDECLACIFQSLSSGDRKRCSLVCRRWLRIEGQSRHRLSLNAQSELLPMIPSLFSRFDVVTKLALKCDRRSVSVGDDALILISQKCRNLTRLKLRACRELTDAGMSVFAKNCKGLKKLSCGSCTFGAKGMNAVLDNCSTLEELSVKRLRGITDGAAAEPIGPGVAASSLKTVCLKELYNGQCFGPLIIGAKNLRTLKLFRCSGDWDKLLQLVTDRVTSLVEIHLERIQVTDVGLAAISNCLDLEIMHLVKTPECTNLGLAAVAERCKLLRKLHIDGWKANRIGDEGLIAVAKCCPNLQELVLIGVNPTRVSLEVLASNCQNLERLALCGSDTVGDVEISCIAAKCVALKKLCIKSCPVSDHGMEALAGGCPNLVKVKVKKCRAVTTEGADWLRARREYVVVNLDSGEAEHQDASDGGVQENGIEFPPQMVQPSVASSRNTRSTSFKTRLGLLSGRSLVAC***************

****************************VISPMHADESSAELPDGTAYDYISNLPDECLACIFQSLSSGDRKRCSLVCRRWLRIEGQSRHRLSLNAQSELLPMIPSLFSRFDVVTKLALKCDRRSVSVGDDALILISQKCRNLTRLKLRACRELTDAGMSVFAKNCKGLKKLSCGSCTFGAKGMNAVLDNCSTLEELSVKRLRGITDGAAAEPIGPGVAASSLKTVCLKELYNGQCFGPLIIGAKNLRTLKLFRCSGDWDKLLQLVTDRVTSLVEIHLERIQVTDVGLAAISNCLDLEIMHLVKTPECTNLGLAAVAERCKLLRKLHIDGWKANRIGDEGLIAVAKCCPNLQELVLIGVNPTRVSLEVLASNCQNLERLALCGSDTVGDVEISCIAAKCVALKKLCIKSCPVSDHGMEALAGGCPNLVKVKVKKCRAVTTEGADWLRARREYVVVNLDSG***********VQENGIEFPPQMV************TSFKTRLGLLSGRSLVACTLRR***********

*****************************************LPDGTAYDYISNLPDECLACIFQSLSSGDRKRCSLVCRRWLRIEGQSRHRLSLNAQSELLPMIPSLFSRFDVVTKLALKCDRRSVSVGDDALILISQKCRNLTRLKLRACRELTDAGMSVFAKNCKGLKKLSCGSCTFGAKGMNAVLDNCSTLEELSVKRLRGITDGAAAEPIGPGVAASSLKTVCLKELYNGQCFGPLIIGAKNLRTLKLFRCSGDWDKLLQLVTDRVTSLVEIHLERIQVTDVGLAAISNCLDLEIMHLVKTPECTNLGLAAVAERCKLLRKLHIDGWKANRIGDEGLIAVAKCCPNLQELVLIGVNPTRVSLEVLASNCQNLERLALCGSDTVGDVEISCIAAKCVALKKLCIKSCPVSDHGMEALAGGCPNLVKVKVKKCRAVTTEGADWLRARREYVVVNLDSGEAEH*************EFPPQMVQPSVASSRNTRSTSFKTRLGLLSGRSLVACTLRRWS*********

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		529	2.2.26 [Sep-21-2011]
Q9C626		518	F-box protein At1g47056 O	yes	no	0.956	0.976	0.653	0.0
Q9S9X4		554	Putative F-box/LRR-repeat	no	no	0.937	0.895	0.639	0.0
Q9FE83		527	F-box protein SKIP2 OS=Ar	no	no	0.982	0.986	0.561	1e-162
Q9SN10		522	F-box/LRR-repeat protein	no	no	0.967	0.980	0.559	1e-157
Q9C5D2		610	F-box/LRR-repeat protein	no	no	0.731	0.634	0.281	2e-24
Q5BJ29		491	F-box/LRR-repeat protein	yes	no	0.672	0.725	0.277	1e-17
Q9UJT9		491	F-box/LRR-repeat protein	yes	no	0.672	0.725	0.274	3e-17
Q96IG2		436	F-box/LRR-repeat protein	no	no	0.727	0.883	0.258	7e-17
Q58DG6		436	F-box/LRR-repeat protein	no	no	0.727	0.883	0.258	7e-17
Q9CZV8		436	F-box/LRR-repeat protein	no	no	0.729	0.885	0.257	7e-17

>sp\|Q9C626\|FB37_ARATH F-box protein At1g47056 OS=Arabidopsis thaliana GN=At1g47056 PE=2 SV=1	Back alignment and function desciption

 Score =  657 bits (1695), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/525 (65%), Positives = 408/525 (77%), Gaps = 19/525 (3%)

Query: 1   MGQSASTAAISSRREFNHSQRYKSKSTAVISPMHADESSAELPDGTAYDYISNLPDECLA 60
           MGQS S A  S         R +SKS  +  P+ + ES    PD     Y S+LPDECLA
Sbjct: 1   MGQSTSAAGNSIL------NRRRSKSFTLKFPIESIESEISQPD-----YTSSLPDECLA 49

Query: 61  CIFQSLSSGDRKRCSLVCRRWLRIEGQSRHRLSLNAQSELLPMIPSLFSRFDVVTKLALK 120
            +FQ L+SG+RKRC+LVCRRW+ +EGQ+R+RLSL+A+S+L+  IPSLFSRFD VTKL+LK
Sbjct: 50  LVFQFLNSGNRKRCALVCRRWMIVEGQNRYRLSLHARSDLITSIPSLFSRFDSVTKLSLK 109

Query: 121 CDRRSVSVGDDALILISQKCRNLTRLKLRACRELTDAGMSVFAKNCKGLKKLSCGSCTFG 180
           CDRRSVS+GD+AL+ IS +CRNL RLKLRACRELTD GM+ FA+NCK LK  SCGSC FG
Sbjct: 110 CDRRSVSIGDEALVKISLRCRNLKRLKLRACRELTDVGMAAFAENCKDLKIFSCGSCDFG 169

Query: 181 AKGMNAVLDNCSTLEELSVKRLRGITDGAAAEPIGPGVAASSLKTVCLKELYNGQCFGPL 240
           AKG+ AVLD+CS LEELS+KRLRG TD  A E IGPGVAASSLK++CLKELYNGQCFGP+
Sbjct: 170 AKGVKAVLDHCSNLEELSIKRLRGFTD-IAPEMIGPGVAASSLKSICLKELYNGQCFGPV 228

Query: 241 IIGAKNLRTLKLFRCSGDWDKLLQLVTDRVTSLVEIHLERIQVTDVGLAAISNCLDLEIM 300
           I+GAKNL++LKLFRCSGDWD LLQ ++ +   +VEIHLER+QV+DV L+AIS C  LE +
Sbjct: 229 IVGAKNLKSLKLFRCSGDWDLLLQEMSGKDHGVVEIHLERMQVSDVALSAISYCSSLESL 288

Query: 301 HLVKTPECTNLGLAAVAERCKLLRKLHIDGWKANRIGDEGLIAVAKCCPNLQELVLIGVN 360
           HLVKTPECTN GLAA+AE+CK LRKLHIDGWKAN IGDEGL+AVAK C  LQELVLIGVN
Sbjct: 289 HLVKTPECTNFGLAAIAEKCKRLRKLHIDGWKANLIGDEGLVAVAKFCSQLQELVLIGVN 348

Query: 361 PTRVSLEVLASNCQNLERLALCGSDTVGDVEISCIAAKCVALKKLCIKSCPVSDHGMEAL 420
           PT +SL +LA+ C NLERLALCG DT GD E+SCIAAKC AL+KLCIK+CP+SD G+E L
Sbjct: 349 PTTLSLGMLAAKCLNLERLALCGCDTFGDPELSCIAAKCPALRKLCIKNCPISDVGIENL 408

Query: 421 AGGCPNLVKVKVKKCRAVTTEGADWLRARREYVVVNLDSGEAEHQDASD----GGVQENG 476
           A GCP L KVK+KKC+ V    ADWLR  R  + VN D+ E EH++A+     GG QENG
Sbjct: 409 ANGCPGLTKVKIKKCKGVLGGCADWLRTVRPMLSVNADTMEQEHEEAASNDVVGGSQENG 468

Query: 477 IEFP---PQMVQPSVASSRNTRSTSFKTRLGLLSGRSLVACTLRR 518
           IEFP    Q++  S+ASS   RS  FK+ +GL SG SLV CT R+
Sbjct: 469 IEFPQLNSQIMASSIASSSRNRSGYFKSGIGLFSGMSLVPCTSRQ 513

Arabidopsis thaliana (taxid: 3702)

>sp\|Q9S9X4\|FBL8_ARATH Putative F-box/LRR-repeat protein 8 OS=Arabidopsis thaliana GN=FBL8 PE=4 SV=1	Back alignment and function description

>sp\|Q9FE83\|SKIP2_ARATH F-box protein SKIP2 OS=Arabidopsis thaliana GN=SKIP2 PE=1 SV=1	Back alignment and function description

>sp\|Q9SN10\|FBL16_ARATH F-box/LRR-repeat protein 16 OS=Arabidopsis thaliana GN=FBL16 PE=2 SV=1	Back alignment and function description

>sp\|Q9C5D2\|FBL4_ARATH F-box/LRR-repeat protein 4 OS=Arabidopsis thaliana GN=FBL4 PE=2 SV=1	Back alignment and function description

>sp\|Q5BJ29\|FBXL7_MOUSE F-box/LRR-repeat protein 7 OS=Mus musculus GN=Fbxl7 PE=1 SV=1	Back alignment and function description

>sp\|Q9UJT9\|FBXL7_HUMAN F-box/LRR-repeat protein 7 OS=Homo sapiens GN=FBXL7 PE=2 SV=1	Back alignment and function description

>sp\|Q96IG2\|FXL20_HUMAN F-box/LRR-repeat protein 20 OS=Homo sapiens GN=FBXL20 PE=1 SV=2	Back alignment and function description

>sp\|Q58DG6\|FXL20_BOVIN F-box/LRR-repeat protein 20 OS=Bos taurus GN=FBXL20 PE=2 SV=2	Back alignment and function description

>sp\|Q9CZV8\|FXL20_MOUSE F-box/LRR-repeat protein 20 OS=Mus musculus GN=Fbxl20 PE=1 SV=3	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		529
255538200		536	skip-2, putative [Ricinus communis] gi\|2	0.994	0.981	0.793	0.0
224063481		533	f-box family protein [Populus trichocarp	0.994	0.986	0.786	0.0
224137640		534	f-box family protein [Populus trichocarp	0.994	0.985	0.779	0.0
449447029		535	PREDICTED: F-box protein At1g47056-like	0.992	0.981	0.784	0.0
225458709		541	PREDICTED: F-box protein At1g47056 [Viti	0.969	0.948	0.785	0.0
356552232		549	PREDICTED: F-box protein At1g47056-like	0.998	0.961	0.739	0.0
356564156		563	PREDICTED: F-box protein At1g47056-like	0.994	0.934	0.707	0.0
357437705		547	F-box protein [Medicago truncatula] gi\|8	0.998	0.965	0.719	0.0
147810958		1151	hypothetical protein VITISV_038872 [Viti	0.979	0.450	0.670	0.0
30013671		550	Avr9/Cf-9 rapidly elicited protein 189 [	0.965	0.929	0.655	0.0

>gi\|255538200\|ref\|XP_002510165.1\| skip-2, putative [Ricinus communis] gi\|223550866\|gb\|EEF52352.1\| skip-2, putative [Ricinus communis]	Back alignment and taxonomy information

 Score =  861 bits (2224), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/538 (79%), Positives = 480/538 (89%), Gaps = 12/538 (2%)

Query: 1   MGQSASTAAISSRREFNHSQRYKSKSTAVISPMHADESSAE----LPDGTAYDYISNLPD 56
           MGQS+S+ AI +RRE  +  R KSKSTA+ISPM  +E + +    L    + DYIS+LPD
Sbjct: 1   MGQSSSSTAILTRRESIY--RSKSKSTALISPMQTEEPNDKDDVVLIINESPDYISDLPD 58

Query: 57  ECLACIFQSLSSGDRKRCSLVCRRWLRIEGQSRHRLSLNAQSELLPMIPSLFSRFDVVTK 116
           ECLACIFQSLS  DR+RCSLVCRRWLRIEGQSRHRLSL+AQS+LLP+I +LF+RFD VTK
Sbjct: 59  ECLACIFQSLSPSDRQRCSLVCRRWLRIEGQSRHRLSLHAQSDLLPVISALFTRFDAVTK 118

Query: 117 LALKCDRRSVSVGDDALILISQKCRNLTRLKLRACRELTDAGMSVFAKNCKGLKKLSCGS 176
           LAL+CDR+S S+GD+AL  IS +CRNLTRLKLR+CR++TDAGM+ FAKNCKGLKKLSCGS
Sbjct: 119 LALRCDRKSASIGDEALEAISLRCRNLTRLKLRSCRDVTDAGMAAFAKNCKGLKKLSCGS 178

Query: 177 CTFGAKGMNAVLDNCSTLEELSVKRLRGITDGAAAEPIGPGVAASSLKTVCLKELYNGQC 236
           CTFGAKGMNAVLDNC++LEELS+KRLRGITDGAAAEPIGPG+AA+SLKT+CLKELYNGQC
Sbjct: 179 CTFGAKGMNAVLDNCASLEELSIKRLRGITDGAAAEPIGPGLAANSLKTICLKELYNGQC 238

Query: 237 FGPLIIGAKNLRTLKLFRCSGDWDKLLQLVTDRVTSLVEIHLERIQVTDVGLAAISNCLD 296
           FGPLIIG+KNLRTLKLFRCSGDWDKLLQ+++DRVT +VEIHLER+QV+DVGL+AISNCLD
Sbjct: 239 FGPLIIGSKNLRTLKLFRCSGDWDKLLQVISDRVTGMVEIHLERLQVSDVGLSAISNCLD 298

Query: 297 LEIMHLVKTPECTNLGLAAVAERCKLLRKLHIDGWKANRIGDEGLIAVAKCCPNLQELVL 356
           LEI+HLVKTPECTNLGL ++AERCKLLRKLHIDGWKANRIGD+GLIAVAK CPNLQELVL
Sbjct: 299 LEILHLVKTPECTNLGLGSIAERCKLLRKLHIDGWKANRIGDDGLIAVAKNCPNLQELVL 358

Query: 357 IGVNPTRVSLEVLASNCQNLERLALCGSDTVGDVEISCIAAKCVALKKLCIKSCPVSDHG 416
           IGVNPT+ SLE+LASNCQNLERLALCGSDTVGD EISCIAAKC++LKKLCIKSCPVSDHG
Sbjct: 359 IGVNPTKSSLEMLASNCQNLERLALCGSDTVGDAEISCIAAKCISLKKLCIKSCPVSDHG 418

Query: 417 MEALAGGCPNLVKVKVKKCRAVTTEGADWLRARREYVVVNLDSGEAEHQD--ASDGGVQE 474
           MEALA GCPNLVKVKVKKCR VT EGADWLRA R  + VNLDSGE EH D  ASDGGVQE
Sbjct: 419 MEALASGCPNLVKVKVKKCRGVTCEGADWLRASRGSLAVNLDSGEHEHHDASASDGGVQE 478

Query: 475 NGIEFPP---QMVQPSVASSRNT-RSTSFKTRLGLLSGRSLVACTLRRWSSGNSSSRN 528
           N +E PP     V PSVASS    RSTSFK+RLGLLSGR+LVACTLRRWSSGN+ SR+
Sbjct: 479 NAVEIPPGQIAAVVPSVASSSTAGRSTSFKSRLGLLSGRNLVACTLRRWSSGNTGSRS 536

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224063481\|ref\|XP_002301165.1\| f-box family protein [Populus trichocarpa] gi\|222842891\|gb\|EEE80438.1\| f-box family protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224137640\|ref\|XP_002327176.1\| f-box family protein [Populus trichocarpa] gi\|222835491\|gb\|EEE73926.1\| f-box family protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|449447029\|ref\|XP_004141272.1\| PREDICTED: F-box protein At1g47056-like [Cucumis sativus] gi\|449515093\|ref\|XP_004164584.1\| PREDICTED: F-box protein At1g47056-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|225458709\|ref\|XP_002284998.1\| PREDICTED: F-box protein At1g47056 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356552232\|ref\|XP_003544473.1\| PREDICTED: F-box protein At1g47056-like [Glycine max]	Back alignment and taxonomy information

>gi\|356564156\|ref\|XP_003550322.1\| PREDICTED: F-box protein At1g47056-like [Glycine max]	Back alignment and taxonomy information

>gi\|357437705\|ref\|XP_003589128.1\| F-box protein [Medicago truncatula] gi\|87240761\|gb\|ABD32619.1\| Cyclin-like F-box [Medicago truncatula] gi\|355478176\|gb\|AES59379.1\| F-box protein [Medicago truncatula]	Back alignment and taxonomy information

>gi\|147810958\|emb\|CAN59800.1\| hypothetical protein VITISV_038872 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|30013671\|gb\|AAP03878.1\| Avr9/Cf-9 rapidly elicited protein 189 [Nicotiana tabacum]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		529
TAIR\|locus:2825736		518	VFB1 "VIER F-box proteine 1" [	0.950	0.971	0.657	1.4e-176
TAIR\|locus:2124372		554	VFB3 "AT4G07400" [Arabidopsis	0.928	0.886	0.650	2.9e-174
TAIR\|locus:2155578		527	SKIP2 "AT5G67250" [Arabidopsis	0.954	0.958	0.573	7.2e-155
TAIR\|locus:2083143		522	VFB2 "AT3G50080" [Arabidopsis	0.924	0.936	0.573	2.7e-148
TAIR\|locus:505006471		610	AT4G15475 "AT4G15475" [Arabido	0.597	0.518	0.281	2.3e-23
UNIPROTKB\|F1SRM7		449	FBXL7 "Uncharacterized protein	0.674	0.795	0.266	3.4e-20
MGI\|MGI:1919444		436	Fbxl20 "F-box and leucine-rich	0.691	0.839	0.279	6.5e-20
UNIPROTKB\|Q58DG6		436	FBXL20 "F-box/LRR-repeat prote	0.691	0.839	0.279	6.5e-20
UNIPROTKB\|Q96IG2		436	FBXL20 "F-box/LRR-repeat prote	0.691	0.839	0.279	6.5e-20
RGD\|1305813		449	Fbxl7 "F-box and leucine-rich	0.674	0.795	0.269	7.5e-20

TAIR\|locus:2825736 VFB1 "VIER F-box proteine 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1715 (608.8 bits), Expect = 1.4e-176, P = 1.4e-176
 Identities = 343/522 (65%), Positives = 407/522 (77%)

Query:     1 MGQSASTAAISSRREFNHSQRYKSKSTAVISPMHADESSAELPDGTAYDYISNLPDECLA 60
             MGQS S A  S     N   R +SKS  +  P+ + ES    PD     Y S+LPDECLA
Sbjct:     1 MGQSTSAAGNSI---LN---RRRSKSFTLKFPIESIESEISQPD-----YTSSLPDECLA 49

Query:    61 CIFQSLSSGDRKRCSLVCRRWLRIEGQSRHRLSLNAQSELLPMIPSLFSRFDVVTKLALK 120
              +FQ L+SG+RKRC+LVCRRW+ +EGQ+R+RLSL+A+S+L+  IPSLFSRFD VTKL+LK
Sbjct:    50 LVFQFLNSGNRKRCALVCRRWMIVEGQNRYRLSLHARSDLITSIPSLFSRFDSVTKLSLK 109

Query:   121 CDRRSVSVGDDALILISQKCRNLTRLKLRACRELTDAGMSVFAKNCKGLKKLSCGSCTFG 180
             CDRRSVS+GD+AL+ IS +CRNL RLKLRACRELTD GM+ FA+NCK LK  SCGSC FG
Sbjct:   110 CDRRSVSIGDEALVKISLRCRNLKRLKLRACRELTDVGMAAFAENCKDLKIFSCGSCDFG 169

Query:   181 AKGMNAVLDNCSTLEELSVKRLRGITDGAAAEPIGPGVAASSLKTVCLKELYNGQCFGPL 240
             AKG+ AVLD+CS LEELS+KRLRG TD  A E IGPGVAASSLK++CLKELYNGQCFGP+
Sbjct:   170 AKGVKAVLDHCSNLEELSIKRLRGFTD-IAPEMIGPGVAASSLKSICLKELYNGQCFGPV 228

Query:   241 IIGAKNLRTLKLFRCSGDWDKLLQLVTDRVTSLVEIHLERIQVTDVGLAAISNCLDLEIM 300
             I+GAKNL++LKLFRCSGDWD LLQ ++ +   +VEIHLER+QV+DV L+AIS C  LE +
Sbjct:   229 IVGAKNLKSLKLFRCSGDWDLLLQEMSGKDHGVVEIHLERMQVSDVALSAISYCSSLESL 288

Query:   301 HLVKTPECTNLGLAAVAERCKLLRKLHIDGWKANRIGDEGLIAVAKCCPNLQELVLIGVN 360
             HLVKTPECTN GLAA+AE+CK LRKLHIDGWKAN IGDEGL+AVAK C  LQELVLIGVN
Sbjct:   289 HLVKTPECTNFGLAAIAEKCKRLRKLHIDGWKANLIGDEGLVAVAKFCSQLQELVLIGVN 348

Query:   361 PTRVSLEVLASNCQNLERLALCGSDTVGDVEISCIAAKCVALKKLCIKSCPVSDHGMEAL 420
             PT +SL +LA+ C NLERLALCG DT GD E+SCIAAKC AL+KLCIK+CP+SD G+E L
Sbjct:   349 PTTLSLGMLAAKCLNLERLALCGCDTFGDPELSCIAAKCPALRKLCIKNCPISDVGIENL 408

Query:   421 AGGCPNLVKVKVKKCRAVTTEGADWLRARREYVVVNLDSGEAEHQDASD----GGVQENG 476
             A GCP L KVK+KKC+ V    ADWLR  R  + VN D+ E EH++A+     GG QENG
Sbjct:   409 ANGCPGLTKVKIKKCKGVLGGCADWLRTVRPMLSVNADTMEQEHEEAASNDVVGGSQENG 468

Query:   477 IEFPP---QMVQPSVASSRNTRSTSFKTRLGLLSGRSLVACT 515
             IEFP    Q++  S+ASS   RS  FK+ +GL SG SLV CT
Sbjct:   469 IEFPQLNSQIMASSIASSSRNRSGYFKSGIGLFSGMSLVPCT 510

GO:0005634 "nucleus" evidence=ISM

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

TAIR\|locus:2124372 VFB3 "AT4G07400" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2155578 SKIP2 "AT5G67250" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2083143 VFB2 "AT3G50080" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:505006471 AT4G15475 "AT4G15475" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|F1SRM7 FBXL7 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

MGI\|MGI:1919444 Fbxl20 "F-box and leucine-rich repeat protein 20" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|Q58DG6 FBXL20 "F-box/LRR-repeat protein 20" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|Q96IG2 FBXL20 "F-box/LRR-repeat protein 20" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

RGD\|1305813 Fbxl7 "F-box and leucine-rich repeat protein 7" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9C626	FB37_ARATH	No assigned EC number	0.6533	0.9565	0.9768	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		529
cd09293		226	cd09293, AMN1, Antagonist of mitotic exit network	3e-13
pfam12937		47	pfam12937, F-box-like, F-box-like	3e-07
cd09293		226	cd09293, AMN1, Antagonist of mitotic exit network	1e-06
cd09293		226	cd09293, AMN1, Antagonist of mitotic exit network	3e-06
pfam00646		48	pfam00646, F-box, F-box domain	7e-06
cd09293		226	cd09293, AMN1, Antagonist of mitotic exit network	1e-05
smart00256		41	smart00256, FBOX, A Receptor for Ubiquitination Ta	5e-04

>gnl\|CDD\|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1	Back alignment and domain information

 Score = 68.5 bits (168), Expect = 3e-13
 Identities = 46/126 (36%), Positives = 66/126 (52%), Gaps = 7/126 (5%)

Query: 319 RCKLLRKLHIDGWKANRIGDEGLIAVAKCCPNLQELVLIGV-NPTRVSLEVLASNCQNLE 377
            C  L+KL + G K   I DEGLIA+A+ CPNLQ L L    N T   +  LA+NC  L+
Sbjct: 50  NCNKLKKLILPGSK--LIDDEGLIALAQSCPNLQVLDLRACENITDSGIVALATNCPKLQ 107

Query: 378 RLAL---CGSDTVGDVEISCIAAKCVALKKLCIKSCPVSDHGMEALAGGC-PNLVKVKVK 433
            + L        + DV +S +   C  L+ +    C V+D G+  LA GC  +L ++ + 
Sbjct: 108 TINLGRHRNGHLITDVSLSALGKNCTFLQTVGFAGCDVTDKGVWELASGCSKSLERLSLN 167

Query: 434 KCRAVT 439
            CR +T
Sbjct: 168 NCRNLT 173

Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226

>gnl\|CDD\|221867 pfam12937, F-box-like, F-box-like	Back alignment and domain information

>gnl\|CDD\|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1	Back alignment and domain information

>gnl\|CDD\|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1	Back alignment and domain information

>gnl\|CDD\|201368 pfam00646, F-box, F-box domain	Back alignment and domain information

>gnl\|CDD\|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1	Back alignment and domain information

>gnl\|CDD\|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		529
KOG4341		483	consensus F-box protein containing LRR [General fu	100.0
KOG2120		419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.94
KOG4341		483	consensus F-box protein containing LRR [General fu	99.91
PLN00113		968	leucine-rich repeat receptor-like protein kinase;	99.81
PLN00113		968	leucine-rich repeat receptor-like protein kinase;	99.8
cd00116		319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.78
cd00116		319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.76
KOG4194		873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.69
KOG2120		419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.67
KOG4194		873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.66
KOG1947		482	consensus Leucine rich repeat proteins, some prote	99.65
KOG1909		382	consensus Ran GTPase-activating protein [RNA proce	99.53
KOG1947		482	consensus Leucine rich repeat proteins, some prote	99.49
KOG1909		382	consensus Ran GTPase-activating protein [RNA proce	99.47
PLN03210		1153	Resistant to P. syringae 6; Provisional	99.34
PLN03210		1153	Resistant to P. syringae 6; Provisional	99.26
KOG3207		505	consensus Beta-tubulin folding cofactor E [Posttra	99.12
KOG0444		1255	consensus Cytoskeletal regulator Flightless-I (con	99.11
KOG3207		505	consensus Beta-tubulin folding cofactor E [Posttra	99.11
PF12937		47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	99.07
KOG0444		1255	consensus Cytoskeletal regulator Flightless-I (con	98.98
KOG0618		1081	consensus Serine/threonine phosphatase 2C containi	98.91
PRK15387		788	E3 ubiquitin-protein ligase SspH2; Provisional	98.86
KOG0618		1081	consensus Serine/threonine phosphatase 2C containi	98.85
KOG3665		699	consensus ZYG-1-like serine/threonine protein kina	98.71
KOG4237		498	consensus Extracellular matrix protein slit, conta	98.67
COG5238		388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.67
PRK15387		788	E3 ubiquitin-protein ligase SspH2; Provisional	98.65
COG5238		388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.6
KOG3665		699	consensus ZYG-1-like serine/threonine protein kina	98.59
PF00646		48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.47
PRK15370		754	E3 ubiquitin-protein ligase SlrP; Provisional	98.43
KOG3864		221	consensus Uncharacterized conserved protein [Funct	98.42
smart00256		41	FBOX A Receptor for Ubiquitination Targets.	98.39
KOG2982		418	consensus Uncharacterized conserved protein [Funct	98.35
PRK15370		754	E3 ubiquitin-protein ligase SlrP; Provisional	98.35
PF14580		175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.32
PF14580		175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.31
KOG0472		565	consensus Leucine-rich repeat protein [Function un	98.18
KOG2982		418	consensus Uncharacterized conserved protein [Funct	98.17
KOG1259		490	consensus Nischarin, modulator of integrin alpha5	98.17
KOG4237		498	consensus Extracellular matrix protein slit, conta	98.14
KOG0472		565	consensus Leucine-rich repeat protein [Function un	98.1
KOG1259		490	consensus Nischarin, modulator of integrin alpha5	98.05
KOG1859		1096	consensus Leucine-rich repeat proteins [General fu	97.78
KOG1859		1096	consensus Leucine-rich repeat proteins [General fu	97.7
KOG3864		221	consensus Uncharacterized conserved protein [Funct	97.6
KOG4308		478	consensus LRR-containing protein [Function unknown	97.54
KOG4308		478	consensus LRR-containing protein [Function unknown	97.5
KOG4658		889	consensus Apoptotic ATPase [Signal transduction me	97.48
KOG4658		889	consensus Apoptotic ATPase [Signal transduction me	97.23
PF13855		61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.21
smart00367		26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	97.02
PF13855		61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	96.96
KOG0617		264	consensus Ras suppressor protein (contains leucine	96.95
smart00367		26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	96.55
KOG2123		388	consensus Uncharacterized conserved protein [Funct	96.52
KOG0617		264	consensus Ras suppressor protein (contains leucine	96.51
KOG2123		388	consensus Uncharacterized conserved protein [Funct	96.5
PLN03150		623	hypothetical protein; Provisional	96.35
PLN03150		623	hypothetical protein; Provisional	96.28
KOG2997		366	consensus F-box protein FBX9 [General function pre	96.25
PF12799		44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	96.24
KOG0281		499	consensus Beta-TrCP (transducin repeats containing	96.14
PLN03215		373	ascorbic acid mannose pathway regulator 1; Provisi	96.13
KOG2739		260	consensus Leucine-rich acidic nuclear protein [Cel	95.93
PF13516		24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	95.79
PRK15386		426	type III secretion protein GogB; Provisional	95.66
KOG2739		260	consensus Leucine-rich acidic nuclear protein [Cel	95.61
PRK15386		426	type III secretion protein GogB; Provisional	95.53
PF12799		44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	95.52
COG4886		394	Leucine-rich repeat (LRR) protein [Function unknow	95.3
PF13516		24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	94.78
smart00368		28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	94.59
KOG1644		233	consensus U2-associated snRNP A' protein [RNA proc	94.58
COG4886		394	Leucine-rich repeat (LRR) protein [Function unknow	94.56
KOG1644		233	consensus U2-associated snRNP A' protein [RNA proc	94.38
KOG0531		414	consensus Protein phosphatase 1, regulatory subuni	94.34
KOG4579		177	consensus Leucine-rich repeat (LRR) protein associ	93.61
KOG0531		414	consensus Protein phosphatase 1, regulatory subuni	93.43
PF13013		109	F-box-like_2: F-box-like domain	92.08
KOG4579		177	consensus Leucine-rich repeat (LRR) protein associ	90.09
smart00368		28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	90.06
KOG0274		537	consensus Cdc4 and related F-box and WD-40 protein	87.96
PF13504		17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	86.71
KOG3763		585	consensus mRNA export factor TAP/MEX67 [RNA proces	86.64
PF09372		97	PRANC: PRANC domain; InterPro: IPR018272 This pres	85.78
KOG3763		585	consensus mRNA export factor TAP/MEX67 [RNA proces	85.63

>KOG4341 consensus F-box protein containing LRR [General function prediction only]	Back alignment and domain information

Probab=100.00  E-value=7.1e-38  Score=286.03  Aligned_cols=375  Identities=24%  Similarity=0.439  Sum_probs=330.0

Q ss_pred             cccCCCHHHHHHHHccCChhhhhHHHHHhHHHHHh--hcccceeeeecccccc--ccchHHHhccCC-ceeEEEeeccCC
Q 009671           50 YISNLPDECLACIFQSLSSGDRKRCSLVCRRWLRI--EGQSRHRLSLNAQSEL--LPMIPSLFSRFD-VVTKLALKCDRR  124 (529)
Q Consensus        50 ~~~~LP~eil~~If~~L~~~d~~~~~~Vck~W~~~--~~~~~~~~~l~~~~~~--~~~l~~~~~~~~-~l~~L~l~~~~~  124 (529)
                      ..-.||+|++..||++|+.+.+++++.+|+.|+..  ..+.|.++++-.....  ..++..+.+++. .++.|.++   +
T Consensus        71 ~~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv~g~VV~~~~~Rcgg~lk~LSlr---G  147 (483)
T KOG4341|consen   71 ISRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDVDGGVVENMISRCGGFLKELSLR---G  147 (483)
T ss_pred             ccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhcCCCcceehHhhhhcccccccccc---c
Confidence            34579999999999999999999999999999985  5678999997543322  234556666664 58889887   5


Q ss_pred             ccccCHHHHHHHHHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCcc-cChHHHHHHHhcCCCCCEEecCCcc
Q 009671          125 SVSVGDDALILISQKCRNLTRLKLRACRELTDAGMSVFAKNCKGLKKLSCGSCT-FGAKGMNAVLDNCSTLEELSVKRLR  203 (529)
Q Consensus       125 ~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~~~l~~~~~~~~~L~~L~l~~~~  203 (529)
                      +..+.+..+..+...|||+++|.+.+|..+++..+..+.++|++|++|++..|. +++..++.+.+.|++|++|++++|.
T Consensus       148 ~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~  227 (483)
T KOG4341|consen  148 CRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCP  227 (483)
T ss_pred             cccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCc
Confidence            788899999999999999999999999999999999999999999999999977 8999999999999999999999998


Q ss_pred             CCCccccccccCCCcccCccchhhccccccCCcchhhhhcCCCCCeEeccccCCCchHHHHHHHhhcCCccEEEeecc-c
Q 009671          204 GITDGAAAEPIGPGVAASSLKTVCLKELYNGQCFGPLIIGAKNLRTLKLFRCSGDWDKLLQLVTDRVTSLVEIHLERI-Q  282 (529)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~  282 (529)
                      .+...++.                           .+..++..++.+.+.+|.....+.+..+..+++.+.++++..| .
T Consensus       228 qi~~~gv~---------------------------~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~  280 (483)
T KOG4341|consen  228 QISGNGVQ---------------------------ALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQ  280 (483)
T ss_pred             hhhcCcch---------------------------HHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhcc
Confidence            87775544                           3447888899998889999999999999999999999998887 8


Q ss_pred             cChHHHHHhhc-CCCCCeEEecCCCCCChhhHHHHHHhCCCCcEEEecCcccCccChHHHHHHHhcCccccceEeeccc-
Q 009671          283 VTDVGLAAISN-CLDLEIMHLVKTPECTNLGLAAVAERCKLLRKLHIDGWKANRIGDEGLIAVAKCCPNLQELVLIGVN-  360 (529)
Q Consensus       283 l~~~~~~~l~~-~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~~~~~~~~L~~L~L~~~~-  360 (529)
                      ++|.++..+.. |..|+.|..++|..+++..+..+..++++|+.|.+++|  ..+++.++..+.++|+.|+.+++.++. 
T Consensus       281 lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c--~~fsd~~ft~l~rn~~~Le~l~~e~~~~  358 (483)
T KOG4341|consen  281 LTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGC--QQFSDRGFTMLGRNCPHLERLDLEECGL  358 (483)
T ss_pred             ccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEecccc--chhhhhhhhhhhcCChhhhhhcccccce
Confidence            99999887764 88999999999999999999999999999999999987  679999999999999999999999984 


Q ss_pred             CcHHHHHHHHhcCCCCCEEEccCCCCCChhHHHHHHH---cCCcCCEEEeccCC-CCHHHHHHHHhcCCCccEEEeccCC
Q 009671          361 PTRVSLEVLASNCQNLERLALCGSDTVGDVEISCIAA---KCVALKKLCIKSCP-VSDHGMEALAGGCPNLVKVKVKKCR  436 (529)
Q Consensus       361 i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~---~~~~L~~L~l~~~~-i~~~~l~~l~~~~~~L~~L~l~~c~  436 (529)
                      +++..+..+..+|+.|++|.++.|..++|+++..+..   +...|+.+.+++|+ +++..++.+. .|++|+.+++.+|.
T Consensus       359 ~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~-~c~~Leri~l~~~q  437 (483)
T KOG4341|consen  359 ITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLS-ICRNLERIELIDCQ  437 (483)
T ss_pred             ehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHh-hCcccceeeeechh
Confidence            5555688888999999999999999999999888764   35689999999998 7777777777 79999999999999


Q ss_pred             CCCHHHHHHHHhcCCcEEEEe
Q 009671          437 AVTTEGADWLRARREYVVVNL  457 (529)
Q Consensus       437 ~i~~~~~~~l~~~~~~l~l~l  457 (529)
                      .++.+++..++.++|..+++-
T Consensus       438 ~vtk~~i~~~~~~lp~i~v~a  458 (483)
T KOG4341|consen  438 DVTKEAISRFATHLPNIKVHA  458 (483)
T ss_pred             hhhhhhhHHHHhhCccceehh
Confidence            999999999999999998753

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG4341 consensus F-box protein containing LRR [General function prediction only]	Back alignment and domain information

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional	Back alignment and domain information

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional	Back alignment and domain information

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily	Back alignment and domain information

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily	Back alignment and domain information

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]	Back alignment and domain information

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]	Back alignment and domain information

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]	Back alignment and domain information

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]	Back alignment and domain information

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]	Back alignment and domain information

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]	Back alignment and domain information

>PLN03210 Resistant to P	Back alignment and domain information

>PLN03210 Resistant to P	Back alignment and domain information

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]	Back alignment and domain information

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B	Back alignment and domain information

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]	Back alignment and domain information

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]	Back alignment and domain information

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional	Back alignment and domain information

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]	Back alignment and domain information

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]	Back alignment and domain information

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]	Back alignment and domain information

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]	Back alignment and domain information

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional	Back alignment and domain information

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]	Back alignment and domain information

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]	Back alignment and domain information

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]	Back alignment and domain information

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional	Back alignment and domain information

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>smart00256 FBOX A Receptor for Ubiquitination Targets	Back alignment and domain information

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional	Back alignment and domain information

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A	Back alignment and domain information

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A	Back alignment and domain information

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]	Back alignment and domain information

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]	Back alignment and domain information

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]	Back alignment and domain information

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]	Back alignment and domain information

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]	Back alignment and domain information

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG4308 consensus LRR-containing protein [Function unknown]	Back alignment and domain information

>KOG4308 consensus LRR-containing protein [Function unknown]	Back alignment and domain information

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]	Back alignment and domain information

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]	Back alignment and domain information

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A	Back alignment and domain information

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily	Back alignment and domain information

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A	Back alignment and domain information

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]	Back alignment and domain information

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily	Back alignment and domain information

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]	Back alignment and domain information

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PLN03150 hypothetical protein; Provisional	Back alignment and domain information

>PLN03150 hypothetical protein; Provisional	Back alignment and domain information

>KOG2997 consensus F-box protein FBX9 [General function prediction only]	Back alignment and domain information

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B	Back alignment and domain information

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]	Back alignment and domain information

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional	Back alignment and domain information

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]	Back alignment and domain information

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A	Back alignment and domain information

>PRK15386 type III secretion protein GogB; Provisional	Back alignment and domain information

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]	Back alignment and domain information

>PRK15386 type III secretion protein GogB; Provisional	Back alignment and domain information

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B	Back alignment and domain information

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]	Back alignment and domain information

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A	Back alignment and domain information

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type	Back alignment and domain information

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]	Back alignment and domain information

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]	Back alignment and domain information

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]	Back alignment and domain information

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]	Back alignment and domain information

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]	Back alignment and domain information

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]	Back alignment and domain information

>PF13013 F-box-like_2: F-box-like domain	Back alignment and domain information

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]	Back alignment and domain information

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type	Back alignment and domain information

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]	Back alignment and domain information

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D	Back alignment and domain information

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]	Back alignment and domain information

>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins	Back alignment and domain information

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		529
2p1m_B		594	Tir1-ask1 Complex Structure Length = 594		4e-09
3ogk_B		592	Structure Of Coi1-Ask1 In Complex With Coronatine A		5e-07

>pdb|2P1M|B Chain B, Tir1-ask1 Complex Structure Length = 594

Back alignment and structure

Iteration: 1

Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 105/501 (20%), Positives = 179/501 (35%), Gaps = 135/501 (26%) Query: 53 NLPDECLACIFQSLS-SGDRKRCSLVCRRWLRIEGQSR---------------------- 89 + P+E L +F + DR SLVC+ W IE R Sbjct: 8 SFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPK 67 Query: 90 ----------HRLSLNAQSE-----LLPMIPSLFSRFDVVTKLALKCDRRSVSVGDDALI 134 H N + + P I ++ S + + ++ LK + V DD L Sbjct: 68 VRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLK----RMVVTDDCLE 123 Query: 135 LISQKCRNLTRLKLRACRELTDAGMSVFAKNCKGLKKL---------------------- 172 LI++ +N L L +C + G++ A C+ LK+L Sbjct: 124 LIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY 183 Query: 173 --------SCGSCTFGAKGMNAVLDNCSTLEELSVKRLRGITDGAA-------AEPIGPG 217 SC + + ++ C L+ L + R + A E +G G Sbjct: 184 TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTG 243 Query: 218 VAASSLKTVCLKELYNGQCFGPLIIGAKNLRTLKLFRCSGDWDKL---LQLVTDRVTSLV 274 + ++ ++Y+G + G K LR L SG WD + L V + L Sbjct: 244 GYTAEVR----PDVYSGLSVA--LSGCKELRCL-----SGFWDAVPAYLPAVYSVCSRLT 292 Query: 275 EIHLERIQVTDVGLAA-ISNCLDLEIMHLVKTPECTNLGLAAVAERCKLLRKLHIDGWKA 333 ++L V L + C L+ + ++ E + GL +A CK LR+L + + Sbjct: 293 TLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIE--DAGLEVLASTCKDLRELRVFPSEP 350 Query: 334 N------RIGDEGLIAVAKCCPNLQELVLIGVNPTRVSLEVLASNCQNLERLALC----- 382 + ++GL++V+ CP L+ ++ T +L +A N N+ R LC Sbjct: 351 FVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPK 410 Query: 383 GSDTVG----DVEISCIAAKC---------------------VALKKLCIKSCPV---SD 414 D + D+ I C KK+ + S SD Sbjct: 411 APDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSD 470 Query: 415 HGMEALAGGCPNLVKVKVKKC 435 GM + GC +L K++++ C Sbjct: 471 LGMHHVLSGCDSLRKLEIRDC 491

PyMOL of 2p1m

>pdb|3OGK|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And An Incomplete Jaz1 Degron Length = 592

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		529
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	5e-67
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	1e-36
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	6e-24
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	5e-65
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	5e-39
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	1e-27
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	8e-19
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	3e-15
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	3e-33
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	9e-18
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	1e-17
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	2e-15
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	2e-10
2ca6_A		386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-14
2ca6_A		386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-11
2ca6_A		386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-08
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-13
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-10
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-10
1fs1_A		53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	1e-08
3goz_A		362	Leucine-rich repeat-containing protein; LEGL7, NES	9e-08
3goz_A		362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-04
3goz_A		362	Leucine-rich repeat-containing protein; LEGL7, NES	6e-04
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	1e-07
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	2e-07
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	6e-06
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	5e-05
2ra8_A		362	Uncharacterized protein Q64V53_bacfr; WGR domain,	4e-07
2ra8_A		362	Uncharacterized protein Q64V53_bacfr; WGR domain,	6e-06
2e31_A		297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	7e-07
3un9_A		372	NLR family member X1; leucine rich repeat (LRR), a	2e-06
3un9_A		372	NLR family member X1; leucine rich repeat (LRR), a	2e-06
3un9_A		372	NLR family member X1; leucine rich repeat (LRR), a	2e-05
3un9_A		372	NLR family member X1; leucine rich repeat (LRR), a	5e-05
3l2o_B		312	F-box only protein 4; small G protein fold, UBL co	9e-05

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592	Back alignment and structure

 Score =  226 bits (577), Expect = 5e-67
 Identities = 85/472 (18%), Positives = 162/472 (34%), Gaps = 85/472 (18%)

Query: 51  ISNLPDECLACIFQSLSS-GDRKRCSLVCRRWLRIEGQSRHRLSLNAQSELLPMIPSLFS 109
                D+ +  +   ++   DR   SLVCRRW +I+ ++R  +++       P    L  
Sbjct: 13  CVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTATP--DRLSR 70

Query: 110 RFDVVTKLALKCDRR-----------------------------------SVSVGDDALI 134
           RF  +  L LK   R                                    + V D  L 
Sbjct: 71  RFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLD 130

Query: 135 LISQ-KCRNLTRLKLRACRELTDAGMSVFAKNCKGLKKL---SCGSCTFGAKGMNAVLDN 190
            +++ +  +L  LKL  C   T  G+     +C+ +K L            K ++ +  +
Sbjct: 131 RLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQH 190

Query: 191 CSTLEE--LSVKRLRGITDGA--------------------AAEPIGPGVAASSLKTVCL 228
            ++LE     +     I+                         E +G   AA++L+  C 
Sbjct: 191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCG 250

Query: 229 KELYNGQCFGPLIIGAKNLRTLKLFRCSGDWDKLLQLVTDRVTSLVEIHLER-IQVTDVG 287
             L          +     R L     S      + ++      + ++ L   +  T+  
Sbjct: 251 GSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDH 310

Query: 288 LAAISNCLDLEIMHLVKTPECTNLGLAAVAERCKLLRKLHIDGW--------KANRIGDE 339
              I  C +LE++         + GL  +A+ CK L++L I+          +   +   
Sbjct: 311 CTLIQKCPNLEVLETRNV--IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQR 368

Query: 340 GLIAVAKCCPNLQELVLIGVNPTRVSLEVLASNCQNLERLALCG-------SDTVGDVEI 392
           GLIA+A+ C  L+ + +   + T  SLE + +  +NL    L         +D   D  +
Sbjct: 369 GLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGV 428

Query: 393 SCIAAKCVALKKLCIKSCP--VSDHGMEALAGGCPNLVKVKVKKCRAVTTEG 442
             +   C  L++         ++D G+  +    PN+  + +      + EG
Sbjct: 429 RSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEG 479

PyMOL of 3ogk

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592	Back alignment and structure

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592	Back alignment and structure

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594	Back alignment and structure

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594	Back alignment and structure

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594	Back alignment and structure

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594	Back alignment and structure

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336	Back alignment and structure

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386	Back alignment and structure

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386	Back alignment and structure

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Length = 53	Back alignment and structure

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362	Back alignment and structure

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362	Back alignment and structure

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176	Back alignment and structure

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362	Back alignment and structure

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362	Back alignment and structure

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Length = 297	Back alignment and structure

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372	Back alignment and structure

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372	Back alignment and structure

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372	Back alignment and structure

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372	Back alignment and structure

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		529
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	100.0
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	100.0
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	99.97
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	99.96
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	99.96
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.95
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.95
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	99.87
2z81_A		549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.86
4fmz_A		347	Internalin; leucine rich repeat, structural genomi	99.85
4fmz_A		347	Internalin; leucine rich repeat, structural genomi	99.84
1o6v_A		466	Internalin A; bacterial infection, extracellular r	99.84
2ca6_A		386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.84
2ca6_A		386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.83
2z81_A		549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.81
3rgz_A		768	Protein brassinosteroid insensitive 1; phytohormon	99.81
3t6q_A		606	CD180 antigen; protein-protein complex, leucine ri	99.81
1o6v_A		466	Internalin A; bacterial infection, extracellular r	99.8
3t6q_A		606	CD180 antigen; protein-protein complex, leucine ri	99.8
2z7x_B		520	TOLL-like receptor 1, variable lymphocyte recepto;	99.8
3rgz_A		768	Protein brassinosteroid insensitive 1; phytohormon	99.79
3vq2_A		606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.77
3j0a_A		844	TOLL-like receptor 5; membrane protein, leucine-ri	99.77
3goz_A		362	Leucine-rich repeat-containing protein; LEGL7, NES	99.75
1ziw_A		680	TOLL-like receptor 3; innate immunity, immune syst	99.75
3j0a_A		844	TOLL-like receptor 5; membrane protein, leucine-ri	99.74
3v47_A		455	TOLL-like receptor 5B and variable lymphocyte REC	99.74
2z63_A		570	TOLL-like receptor 4, variable lymphocyte recepto;	99.74
3v47_A		455	TOLL-like receptor 5B and variable lymphocyte REC	99.73
2id5_A		477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.73
3goz_A		362	Leucine-rich repeat-containing protein; LEGL7, NES	99.73
1ziw_A		680	TOLL-like receptor 3; innate immunity, immune syst	99.72
3vq2_A		606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.72
2z7x_B		520	TOLL-like receptor 1, variable lymphocyte recepto;	99.72
2z63_A		570	TOLL-like receptor 4, variable lymphocyte recepto;	99.72
4eco_A		636	Uncharacterized protein; leucine-rich repeats, pro	99.71
3a79_B		562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.71
3bz5_A		457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.71
4ecn_A		876	Leucine-rich repeat protein; leucine-rich repeats,	99.71
3o6n_A		390	APL1; leucine-rich repeat, protein binding; HET: N	99.69
4eco_A		636	Uncharacterized protein; leucine-rich repeats, pro	99.69
4ecn_A		876	Leucine-rich repeat protein; leucine-rich repeats,	99.69
2id5_A		477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.68
3o6n_A		390	APL1; leucine-rich repeat, protein binding; HET: N	99.68
3oja_B		597	Anopheles plasmodium-responsive leucine-rich REPE	99.63
3bz5_A		457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.61
3oja_B		597	Anopheles plasmodium-responsive leucine-rich REPE	99.61
3o53_A		317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.6
1xku_A		330	Decorin; proteoglycan, leucine-rich repeat, struct	99.59
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	99.58
1xku_A		330	Decorin; proteoglycan, leucine-rich repeat, struct	99.58
3un9_A		372	NLR family member X1; leucine rich repeat (LRR), a	99.57
3a79_B		562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.56
2z80_A		353	TOLL-like receptor 2, variable lymphocyte recepto;	99.55
1jl5_A		454	Outer protein YOPM; leucine-rich repeat, molecular	99.55
2ft3_A		332	Biglycan; proteoglycan, dimer interface, structura	99.54
1jl5_A		454	Outer protein YOPM; leucine-rich repeat, molecular	99.53
3un9_A		372	NLR family member X1; leucine rich repeat (LRR), a	99.52
2z80_A		353	TOLL-like receptor 2, variable lymphocyte recepto;	99.51
2ft3_A		332	Biglycan; proteoglycan, dimer interface, structura	99.49
3oja_A		487	Leucine-rich immune molecule 1; coiled-coil, helix	99.48
3zyj_A		440	Leucine-rich repeat-containing protein 4C; cell ad	99.48
3o53_A		317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.48
3zyi_A		452	Leucine-rich repeat-containing protein 4; cell adh	99.48
4fcg_A		328	Uncharacterized protein; structural genomics, PSI-	99.46
1ozn_A		285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.46
1ogq_A		313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.45
2z66_A		306	Variable lymphocyte receptor B, TOLL-like recepto;	99.45
3g06_A		622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.43
1ogq_A		313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.42
2z66_A		306	Variable lymphocyte receptor B, TOLL-like recepto;	99.42
4glp_A		310	Monocyte differentiation antigen CD14; alpha beta	99.42
1h6u_A		308	Internalin H; cell adhesion, leucine rich repeat,	99.42
3zyj_A		440	Leucine-rich repeat-containing protein 4C; cell ad	99.4
1ozn_A		285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.4
3zyi_A		452	Leucine-rich repeat-containing protein 4; cell adh	99.39
3oja_A		487	Leucine-rich immune molecule 1; coiled-coil, helix	99.39
4glp_A		310	Monocyte differentiation antigen CD14; alpha beta	99.38
1wwl_A		312	Monocyte differentiation antigen CD14; LPS, immune	99.38
4fcg_A		328	Uncharacterized protein; structural genomics, PSI-	99.37
4g8a_A		635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.37
1h6u_A		308	Internalin H; cell adhesion, leucine rich repeat,	99.36
3g06_A		622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.35
1wwl_A		312	Monocyte differentiation antigen CD14; LPS, immune	99.33
4ezg_A		197	Putative uncharacterized protein; internalin-A, le	99.28
4g8a_A		635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.25
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	99.22
2ra8_A		362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.21
2ra8_A		362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.2
2o6q_A		270	Variable lymphocyte receptor A; leucine-rich repea	99.19
2z62_A		276	TOLL-like receptor 4, variable lymphocyte recepto;	99.19
2z62_A		276	TOLL-like receptor 4, variable lymphocyte recepto;	99.18
1h6t_A		291	Internalin B; cell adhesion, leucine rich repeat,	99.17
3rfs_A		272	Internalin B, repeat modules, variable lymphocyte	99.17
2o6q_A		270	Variable lymphocyte receptor A; leucine-rich repea	99.16
4ezg_A		197	Putative uncharacterized protein; internalin-A, le	99.15
3rfs_A		272	Internalin B, repeat modules, variable lymphocyte	99.12
1p9a_G		290	Platelet glycoprotein IB alpha chain precursor; pl	99.1
2xwt_C		239	Thyrotropin receptor; signaling protein-immune sys	99.1
1m9s_A		605	Internalin B; cell invasion, GW domains, SH3 domai	99.1
1io0_A		185	Tropomodulin; LRR protein, right-handed super-heli	99.09
1h6t_A		291	Internalin B; cell adhesion, leucine rich repeat,	99.07
1fs1_A		53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	99.06
1io0_A		185	Tropomodulin; LRR protein, right-handed super-heli	99.05
2xwt_C		239	Thyrotropin receptor; signaling protein-immune sys	99.03
1m9s_A		605	Internalin B; cell invasion, GW domains, SH3 domai	98.98
3m19_A		251	Variable lymphocyte receptor A diversity region; a	98.98
1p9a_G		290	Platelet glycoprotein IB alpha chain precursor; pl	98.98
1xeu_A		263	Internalin C; cellular invasion, leucine-rich repe	98.95
2je0_A		149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.93
3m19_A		251	Variable lymphocyte receptor A diversity region; a	98.91
1xeu_A		263	Internalin C; cellular invasion, leucine-rich repe	98.89
2ell_A		168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.88
3sb4_A		329	Hypothetical leucine rich repeat protein; LRR, rig	98.86
2je0_A		149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.79
2ell_A		168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.78
3sb4_A		329	Hypothetical leucine rich repeat protein; LRR, rig	98.74
3cvr_A		571	Invasion plasmid antigen; leucine rich repeat and	98.74
2xot_A		361	Amphoterin-induced protein 1; cell adhesion, neuro	98.72
2o6s_A		208	Variable lymphocyte receptor B; leucine-rich repea	98.71
3cvr_A		571	Invasion plasmid antigen; leucine rich repeat and	98.66
1dce_A		567	Protein (RAB geranylgeranyltransferase alpha subun	98.66
2v9t_B		220	SLIT homolog 2 protein N-product; structural prote	98.63
1ds9_A		198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.62
2o6s_A		208	Variable lymphocyte receptor B; leucine-rich repea	98.62
1pgv_A		197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.59
1dce_A		567	Protein (RAB geranylgeranyltransferase alpha subun	98.59
1a9n_A		176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.58
3e6j_A		229	Variable lymphocyte receptor diversity region; var	98.57
1a9n_A		176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.57
1pgv_A		197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.52
4ay9_X		350	Follicle-stimulating hormone receptor; hormone-rec	98.5
2xot_A		361	Amphoterin-induced protein 1; cell adhesion, neuro	98.5
1ds9_A		198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.49
2v70_A		220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.47
4ay9_X		350	Follicle-stimulating hormone receptor; hormone-rec	98.45
3e6j_A		229	Variable lymphocyte receptor diversity region; var	98.44
2v9t_B		220	SLIT homolog 2 protein N-product; structural prote	98.43
2v70_A		220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.34
2wfh_A		193	SLIT homolog 2 protein C-product; developmental pr	98.15
2e31_A		297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	98.14
3l2o_B		312	F-box only protein 4; small G protein fold, UBL co	98.13
1w8a_A		192	SLIT protein; signaling protein, secreted protein,	98.08
2o6r_A		177	Variable lymphocyte receptor B; leucine-rich repea	98.04
2wfh_A		193	SLIT homolog 2 protein C-product; developmental pr	97.98
2o6r_A		177	Variable lymphocyte receptor B; leucine-rich repea	97.96
1w8a_A		192	SLIT protein; signaling protein, secreted protein,	97.96
4b8c_D		727	Glucose-repressible alcohol dehydrogenase transcr	97.9
4b8c_D		727	Glucose-repressible alcohol dehydrogenase transcr	97.76
4fdw_A		401	Leucine rich hypothetical protein; putative cell s	97.66
4fdw_A		401	Leucine rich hypothetical protein; putative cell s	97.61
3v7d_B		464	Cell division control protein 4; WD 40 domain, pho	97.56
1p22_A		435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.54
3g39_A		170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.36
2ovr_B		445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.35
3g39_A		170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.35
2r9u_A		174	Variable lymphocyte receptor; adaptive immunity, V	97.34
3rw6_A		267	Nuclear RNA export factor 1; retroviral constituti	97.27
4fs7_A		394	Uncharacterized protein; leucine-rich repeats, pro	97.05
3rw6_A		267	Nuclear RNA export factor 1; retroviral constituti	97.04
2r9u_A		174	Variable lymphocyte receptor; adaptive immunity, V	96.77
2ifg_A		347	High affinity nerve growth factor receptor; TRK, T	96.65
2ifg_A		347	High affinity nerve growth factor receptor; TRK, T	96.16
4gt6_A		394	Cell surface protein; leucine rich repeats, putati	96.02
4fs7_A		394	Uncharacterized protein; leucine-rich repeats, pro	95.37
4gt6_A		394	Cell surface protein; leucine rich repeats, putati	87.83

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*	Back alignment and structure

Probab=100.00  E-value=2.1e-39  Score=340.36  Aligned_cols=427  Identities=22%  Similarity=0.325  Sum_probs=302.0

Q ss_pred             CCcccCCCHHHHHHHHccCC-hhhhhHHHHHhHHHHHhhcccceeeeeccccccccchHHHhccCCceeEEEeeccCCc-
Q 009671           48 YDYISNLPDECLACIFQSLS-SGDRKRCSLVCRRWLRIEGQSRHRLSLNAQSELLPMIPSLFSRFDVVTKLALKCDRRS-  125 (529)
Q Consensus        48 ~~~~~~LP~eil~~If~~L~-~~d~~~~~~Vck~W~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~l~~L~l~~~~~~-  125 (529)
                      .|.|+.||+||+.+||+||+ .+|++++++|||+|+++....|+.+.+......  ....++.+++++++|+++..... 
T Consensus         3 ~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~L~~L~L~~~~~~~   80 (594)
T 2p1m_B            3 KRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAV--SPATVIRRFPKVRSVELKGKPHFA   80 (594)
T ss_dssp             -------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSS--CHHHHHHHCTTCCEEEEECSCGGG
T ss_pred             ccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeecccccc--CHHHHHhhCCCceEEeccCCCchh
Confidence            47899999999999999999 999999999999999997777888877654332  23456778899999999842110 


Q ss_pred             ---------cccCHHHHHHHHHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCcc-cChHHHHHHHhcCCCCC
Q 009671          126 ---------VSVGDDALILISQKCRNLTRLKLRACRELTDAGMSVFAKNCKGLKKLSCGSCT-FGAKGMNAVLDNCSTLE  195 (529)
Q Consensus       126 ---------~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~~~l~~~~~~~~~L~  195 (529)
                               ......++..+...+++|++|++++| .+++..+..+...+++|++|++++|. +++.++..+...+++|+
T Consensus        81 ~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~  159 (594)
T 2p1m_B           81 DFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRM-VVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLK  159 (594)
T ss_dssp             GGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCC
T ss_pred             hcccccccccchhhHHHHHHHHhCCCCCeEEeeCc-EEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCC
Confidence                     02234566777778999999999986 68888888887779999999999994 77778888888899999


Q ss_pred             EEecCCccCCCccccccccCCCcccCccchhhccccc---cCCcchhhhhcCCCCCeEeccccCCCch------------
Q 009671          196 ELSVKRLRGITDGAAAEPIGPGVAASSLKTVCLKELY---NGQCFGPLIIGAKNLRTLKLFRCSGDWD------------  260 (529)
Q Consensus       196 ~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~---~~~~~~~~~~~~~~L~~L~l~~~~~~~~------------  260 (529)
                      +|++.+|. +++.+...+......+++|+.|++..+.   ....+..+...+++|++|++.+|.....            
T Consensus       160 ~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~  238 (594)
T 2p1m_B          160 ELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLE  238 (594)
T ss_dssp             EEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCS
T ss_pred             EEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcce
Confidence            99999875 4443332222222356778887776653   1123344445577777777776632111            


Q ss_pred             ----------------------------------------HHHHHHHhhcCCccEEEeeccccChHHHHHh-hcCCCCCe
Q 009671          261 ----------------------------------------KLLQLVTDRVTSLVEIHLERIQVTDVGLAAI-SNCLDLEI  299 (529)
Q Consensus       261 ----------------------------------------~~l~~l~~~~~~L~~L~l~~~~l~~~~~~~l-~~~~~L~~  299 (529)
                                                              ..+..+...+++|++|++++|.+++..+..+ ..+++|++
T Consensus       239 ~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~  318 (594)
T 2p1m_B          239 ELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQR  318 (594)
T ss_dssp             EEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCE
T ss_pred             EcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCE
Confidence                                                    1122222345667777777777776665553 45788888


Q ss_pred             EEecCCCCCChhhHHHHHHhCCCCcEEEecCc------ccCccChHHHHHHHhcCccccceEeecccCcHHHHHHHHhcC
Q 009671          300 MHLVKTPECTNLGLAAVAERCKLLRKLHIDGW------KANRIGDEGLIAVAKCCPNLQELVLIGVNPTRVSLEVLASNC  373 (529)
Q Consensus       300 L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~------~~~~i~~~~l~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~  373 (529)
                      |++.+|  +++.++..+...+++|++|++.++      .+..+++.++..+...+++|+.|.+.++.+++..+..+...+
T Consensus       319 L~l~~~--~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~  396 (594)
T 2p1m_B          319 LWVLDY--IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNR  396 (594)
T ss_dssp             EEEEGG--GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHC
T ss_pred             EeCcCc--cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhC
Confidence            888776  456667777777888888888431      235677788877777788888888877888888888877778


Q ss_pred             CCCCEEEcc-----CCCCCC----hhHHHHHHHcCCcCCEEEeccCCCCHHHHHHHHhcCCCccEEEeccCCCCCHHHHH
Q 009671          374 QNLERLALC-----GSDTVG----DVEISCIAAKCVALKKLCIKSCPVSDHGMEALAGGCPNLVKVKVKKCRAVTTEGAD  444 (529)
Q Consensus       374 ~~L~~L~l~-----~~~~~~----~~~l~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~  444 (529)
                      ++|++|+++     +|..++    +.++..+...|++|+.|++++ .+++.++..+...+++|+.|++++|. +++.++.
T Consensus       397 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~~  474 (594)
T 2p1m_B          397 PNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGMH  474 (594)
T ss_dssp             TTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCC-SSHHHHH
T ss_pred             CCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCC-CcHHHHH
Confidence            888888888     566777    677777777888888888877 78888888887668888888888887 8888887


Q ss_pred             HHHhcCCcEEEEeccCccccccccCCccccCCc-----cCC-CcccccCcccc
Q 009671          445 WLRARREYVVVNLDSGEAEHQDASDGGVQENGI-----EFP-PQMVQPSVASS  491 (529)
Q Consensus       445 ~l~~~~~~l~l~l~~~~~~~ld~~~~~~~~~~~-----~~p-l~~l~l~~c~~  491 (529)
                      .+....+.         +..+++++|.+.+.+.     .+| ++.+.+++|..
T Consensus       475 ~l~~~~~~---------L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          475 HVLSGCDS---------LRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             HHHHHCTT---------CCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred             HHHhcCCC---------cCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence            77655433         4555666666654432     245 88888888876

PyMOL of 2p1m

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*	Back alignment and structure

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*	Back alignment and structure

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A	Back alignment and structure

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*	Back alignment and structure

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}	Back alignment and structure

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}	Back alignment and structure

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A	Back alignment and structure

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A	Back alignment and structure

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A	Back alignment and structure

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*	Back alignment and structure

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*	Back alignment and structure

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*	Back alignment and structure

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A	Back alignment and structure

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*	Back alignment and structure

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}	Back alignment and structure

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*	Back alignment and structure

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*	Back alignment and structure

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}	Back alignment and structure

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}	Back alignment and structure

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*	Back alignment and structure

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}	Back alignment and structure

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*	Back alignment and structure

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}	Back alignment and structure

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*	Back alignment and structure

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}	Back alignment and structure

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}	Back alignment and structure

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*	Back alignment and structure

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*	Back alignment and structure

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}	Back alignment and structure

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}	Back alignment and structure

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}	Back alignment and structure

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}	Back alignment and structure

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}	Back alignment and structure

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}	Back alignment and structure

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}	Back alignment and structure

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}	Back alignment and structure

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}	Back alignment and structure

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}	Back alignment and structure

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}	Back alignment and structure

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}	Back alignment and structure

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}	Back alignment and structure

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A	Back alignment and structure

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*	Back alignment and structure

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}	Back alignment and structure

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}	Back alignment and structure

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}	Back alignment and structure

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A	Back alignment and structure

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}	Back alignment and structure

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A	Back alignment and structure

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}	Back alignment and structure

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}	Back alignment and structure

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}	Back alignment and structure

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}	Back alignment and structure

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}	Back alignment and structure

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A	Back alignment and structure

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}	Back alignment and structure

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*	Back alignment and structure

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8	Back alignment and structure

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}	Back alignment and structure

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}	Back alignment and structure

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8	Back alignment and structure

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}	Back alignment and structure

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}	Back alignment and structure

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1	Back alignment and structure

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}	Back alignment and structure

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*	Back alignment and structure

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A	Back alignment and structure

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}	Back alignment and structure

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}	Back alignment and structure

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}	Back alignment and structure

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*	Back alignment and structure

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1	Back alignment and structure

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}	Back alignment and structure

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}	Back alignment and structure

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}	Back alignment and structure

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A	Back alignment and structure

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}	Back alignment and structure

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}	Back alignment and structure

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}	Back alignment and structure

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*	Back alignment and structure

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*	Back alignment and structure

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A	Back alignment and structure

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A	Back alignment and structure

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}	Back alignment and structure

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}	Back alignment and structure

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A	Back alignment and structure

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A	Back alignment and structure

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*	Back alignment and structure

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A	Back alignment and structure

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1	Back alignment and structure

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A	Back alignment and structure

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E	Back alignment and structure

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1	Back alignment and structure

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*	Back alignment and structure

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A	Back alignment and structure

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A	Back alignment and structure

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A	Back alignment and structure

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}	Back alignment and structure

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A	Back alignment and structure

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A	Back alignment and structure

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}	Back alignment and structure

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A	Back alignment and structure

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}	Back alignment and structure

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A	Back alignment and structure

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A	Back alignment and structure

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}	Back alignment and structure

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}	Back alignment and structure

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}	Back alignment and structure

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}	Back alignment and structure

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}	Back alignment and structure

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*	Back alignment and structure

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A	Back alignment and structure

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A	Back alignment and structure

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}	Back alignment and structure

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1	Back alignment and structure

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*	Back alignment and structure

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4	Back alignment and structure

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}	Back alignment and structure

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4	Back alignment and structure

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1	Back alignment and structure

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*	Back alignment and structure

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}	Back alignment and structure

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A	Back alignment and structure

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}	Back alignment and structure

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*	Back alignment and structure

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}	Back alignment and structure

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A	Back alignment and structure

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}	Back alignment and structure

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}	Back alignment and structure

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A	Back alignment and structure

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}	Back alignment and structure

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7	Back alignment and structure

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}	Back alignment and structure

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}	Back alignment and structure

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}	Back alignment and structure

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7	Back alignment and structure

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}	Back alignment and structure

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}	Back alignment and structure

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A	Back alignment and structure

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A	Back alignment and structure

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*	Back alignment and structure

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1	Back alignment and structure

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D	Back alignment and structure

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*	Back alignment and structure

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D	Back alignment and structure

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}	Back alignment and structure

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A	Back alignment and structure

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}	Back alignment and structure

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A	Back alignment and structure

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}	Back alignment and structure

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7	Back alignment and structure

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7	Back alignment and structure

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}	Back alignment and structure

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}	Back alignment and structure

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		529
d1nexb1		100	a.158.1.1 (B:270-369) Cdc4 F-box and linker domain	3e-08
d1fs1a1		41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	6e-07
d2ovrb1		102	a.158.1.1 (B:2263-2364) F-box/WD repeat-containing	4e-06
d1p22a1		118	a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b	4e-05
d1z7xw1		460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-05
d1z7xw1		460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1		460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1		460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d2astb2		284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.001
d2astb2		284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.003

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100	Back information, alignment and structure


class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.3 bits (117), Expect = 3e-08
 Identities = 12/36 (33%), Positives = 16/36 (44%)

Query: 49 DYISNLPDECLACIFQSLSSGDRKRCSLVCRRWLRI 84
          D I++LP E    IF  L   D      V + W +I
Sbjct: 4  DLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKI 39

PyMOL of d1nexb1

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41	Back information, alignment and structure

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102	Back information, alignment and structure

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118	Back information, alignment and structure

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460	Back information, alignment and structure

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460	Back information, alignment and structure

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460	Back information, alignment and structure

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460	Back information, alignment and structure

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284	Back information, alignment and structure

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		529
d2astb2		284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.91
d1z7xw1		460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.86
d2astb2		284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.86
d1z7xw1		460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.79
d2ca6a1		344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.72
d2ca6a1		344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.66
d2omza2		384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.5
d2omza2		384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.43
d1fs1a1		41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	99.21
d1xkua_		305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.12
d1h6ua2		227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.07
d1h6ua2		227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.03
d1ozna_		284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.03
d1h6ta2		210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.02
d1ozna_		284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.01
d1xkua_		305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.01
d2omxa2		199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.01
d2omxa2		199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.92
d1h6ta2		210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.92
d1a9na_		162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.8
d1p9ag_		266	von Willebrand factor binding domain of glycoprote	98.76
d1ogqa_		313	Polygalacturonase inhibiting protein PGIP {Kidney	98.76
d1p9ag_		266	von Willebrand factor binding domain of glycoprote	98.74
d1pgva_		167	Tropomodulin C-terminal domain {nematode (Caenorha	98.73
d1ogqa_		313	Polygalacturonase inhibiting protein PGIP {Kidney	98.73
d1a9na_		162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.71
d1nexb1		100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.68
d1io0a_		166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.67
d2ovrb1		102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.62
d1pgva_		167	Tropomodulin C-terminal domain {nematode (Caenorha	98.61
d1io0a_		166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.58
d1jl5a_		353	Leucine rich effector protein YopM {Yersinia pesti	98.54
d1jl5a_		353	Leucine rich effector protein YopM {Yersinia pesti	98.47
d1m9la_		198	Outer arm dynein light chain 1 {Green algae (Chlam	98.46
d1dcea3		124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.44
d1p22a1		118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.4
d1dcea3		124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.39
d1m9la_		198	Outer arm dynein light chain 1 {Green algae (Chlam	98.36
d1xwdc1		242	Follicle-stimulating hormone receptor {Human (Homo	98.09
d1w8aa_		192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.08
d1xwdc1		242	Follicle-stimulating hormone receptor {Human (Homo	97.87
d1w8aa_		192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.78
d1koha1		162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.41
d1koha1		162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.19
d2ifga3		156	High affinity nerve growth factor receptor, N-term	97.15
d2ifga3		156	High affinity nerve growth factor receptor, N-term	96.92

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.2e-23  Score=195.69  Aligned_cols=205  Identities=16%  Similarity=0.220  Sum_probs=183.2

Q ss_pred             CCCCCeEeccccCCCchHHHHHHHhhcCCccEEEeeccccChHHHHHhhcCCCCCeEEecCCCCCChhhHHHHHHhCCCC
Q 009671          244 AKNLRTLKLFRCSGDWDKLLQLVTDRVTSLVEIHLERIQVTDVGLAAISNCLDLEIMHLVKTPECTNLGLAAVAERCKLL  323 (529)
Q Consensus       244 ~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L  323 (529)
                      ..+|++|++++| .+....+..+...+++|++|+++++.+++..+..++++++|++|++++|..+++.++..++..+++|
T Consensus        45 ~~~L~~LdLs~~-~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          45 PFRVQHMDLSNS-VIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             CBCCCEEECTTC-EECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             CCCCCEEECCCC-ccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence            468999999987 4667778888999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEecCcccCccChHHHHHHH-hcCccccceEeecc--cCcHHHHHHHHhcCCCCCEEEccCCCCCChhHHHHHHHcCC
Q 009671          324 RKLHIDGWKANRIGDEGLIAVA-KCCPNLQELVLIGV--NPTRVSLEVLASNCQNLERLALCGSDTVGDVEISCIAAKCV  400 (529)
Q Consensus       324 ~~L~L~~~~~~~i~~~~l~~~~-~~~~~L~~L~L~~~--~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~  400 (529)
                      ++|++++|  ..+++.++.... ..+++|+.|+++++  .+++.++..+..+||+|++|++++|..+++.++..+. .++
T Consensus       124 ~~L~ls~c--~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~-~~~  200 (284)
T d2astb2         124 DELNLSWC--FDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-QLN  200 (284)
T ss_dssp             CEEECCCC--TTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG-GCT
T ss_pred             cccccccc--cccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhc-ccC
Confidence            99999986  578888876644 44689999999976  6889999999899999999999999999999888776 589


Q ss_pred             cCCEEEeccC-CCCHHHHHHHHhcCCCccEEEeccCCCCCHHHHHHHHhcCCcEEE
Q 009671          401 ALKKLCIKSC-PVSDHGMEALAGGCPNLVKVKVKKCRAVTTEGADWLRARREYVVV  455 (529)
Q Consensus       401 ~L~~L~l~~~-~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~l~l  455 (529)
                      +|++|++++| .+++.++..+. .+|+|+.|++.+|  +++.++..+.+..|.+.+
T Consensus       201 ~L~~L~L~~C~~i~~~~l~~L~-~~~~L~~L~l~~~--~~d~~l~~l~~~lp~L~i  253 (284)
T d2astb2         201 YLQHLSLSRCYDIIPETLLELG-EIPTLKTLQVFGI--VPDGTLQLLKEALPHLQI  253 (284)
T ss_dssp             TCCEEECTTCTTCCGGGGGGGG-GCTTCCEEECTTS--SCTTCHHHHHHHSTTSEE
T ss_pred             cCCEEECCCCCCCChHHHHHHh-cCCCCCEEeeeCC--CCHHHHHHHHHhCccccc
Confidence            9999999998 49999988887 5999999999999  799999999998888766

PyMOL of d2astb2

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}	Back information, alignment and structure

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}	Back information, alignment and structure

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}	Back information, alignment and structure

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}	Back information, alignment and structure

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}	Back information, alignment and structure

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}	Back information, alignment and structure

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}	Back information, alignment and structure

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}	Back information, alignment and structure

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}	Back information, alignment and structure

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}	Back information, alignment and structure

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}	Back information, alignment and structure

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}	Back information, alignment and structure

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure