Citrus Sinensis ID: 009672
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 529 | 2.2.26 [Sep-21-2011] | |||||||
| Q8BID8 | 400 | F-box/LRR-repeat protein | yes | no | 0.551 | 0.73 | 0.343 | 8e-17 | |
| Q17R01 | 400 | F-box/LRR-repeat protein | yes | no | 0.551 | 0.73 | 0.343 | 8e-17 | |
| Q8N1E6 | 418 | F-box/LRR-repeat protein | yes | no | 0.576 | 0.729 | 0.337 | 8e-17 | |
| Q723K6 | 800 | Internalin-A OS=Listeria | yes | no | 0.629 | 0.416 | 0.295 | 1e-11 | |
| Q8YA32 | 1778 | Internalin-I OS=Listeria | yes | no | 0.722 | 0.214 | 0.263 | 1e-11 | |
| G2K3G6 | 800 | Internalin-A OS=Listeria | no | no | 0.629 | 0.416 | 0.293 | 2e-11 | |
| P35859 | 603 | Insulin-like growth facto | no | no | 0.805 | 0.706 | 0.248 | 6e-11 | |
| P70389 | 603 | Insulin-like growth facto | no | no | 0.803 | 0.704 | 0.256 | 8e-11 | |
| P0DJM0 | 800 | Internalin-A OS=Listeria | no | no | 0.629 | 0.416 | 0.291 | 9e-11 | |
| Q723X5 | 1775 | Internalin-I OS=Listeria | no | no | 0.720 | 0.214 | 0.257 | 1e-10 |
| >sp|Q8BID8|FXL14_MOUSE F-box/LRR-repeat protein 14 OS=Mus musculus GN=Fbxl14 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 89.0 bits (219), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 110/320 (34%), Positives = 174/320 (54%), Gaps = 28/320 (8%)
Query: 222 LHVFLTSLQKLTLLNLEGCP-VTAACLDS--LSALGSLFYLNLNRC-QLSDDGCEKFSK- 276
L + + + LNL GC +T L + +GSL LNL+ C Q++D + ++
Sbjct: 82 LSYVIQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQY 141
Query: 277 IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIGDEGLVNLTGLCN------ 327
+ L+VL LG + IT+ L+ + GL L+SLNL SC + D G+ +L G+
Sbjct: 142 LKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGC 201
Query: 328 --LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLD 382
L+ L L D Q + L+H+S GLT L +NLSF G ISD L L+ + SL+SLNL
Sbjct: 202 LGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLR 261
Query: 383 A-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDA 437
+ I+DTG+ A+ SL L+ LD+ F ++ D AY+ + L+SL +C ++D
Sbjct: 262 SCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDD 320
Query: 438 GV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPL 494
G+ + ++ + L LN+ Q +TDK LELI+ L+ L +++ +RIT GL + L
Sbjct: 321 GINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQL 380
Query: 495 KNLRSLTLESCKVTANDIKR 514
L+ L L ++T ++ R
Sbjct: 381 PCLKVLNLGLWQMTDSEKVR 400
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Substrate-recognition component of some (SKP1-CUL1-F-box protein)-type E3 ubiquitin-protein ligase complexes. The SCF(FBXL14) complex acts by mediating ubiquitination and subsequent degradation of SNAI1. Mus musculus (taxid: 10090) |
| >sp|Q17R01|FXL14_BOVIN F-box/LRR-repeat protein 14 OS=Bos taurus GN=FBXL14 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 89.0 bits (219), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 110/320 (34%), Positives = 174/320 (54%), Gaps = 28/320 (8%)
Query: 222 LHVFLTSLQKLTLLNLEGCP-VTAACLDS--LSALGSLFYLNLNRC-QLSDDGCEKFSK- 276
L + + + LNL GC +T L + +GSL LNL+ C Q++D + ++
Sbjct: 82 LSYVIQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQY 141
Query: 277 IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIGDEGLVNLTGLCN------ 327
+ L+VL LG + IT+ L+ + GL L+SLNL SC + D G+ +L G+
Sbjct: 142 LKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGC 201
Query: 328 --LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLD 382
L+ L L D Q + L+H+S GLT L +NLSF G ISD L L+ + SL+SLNL
Sbjct: 202 LGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLR 261
Query: 383 A-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDA 437
+ I+DTG+ A+ SL L+ LD+ F ++ D AY+ + L+SL +C ++D
Sbjct: 262 SCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDD 320
Query: 438 GV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPL 494
G+ + ++ + L LN+ Q +TDK LELI+ L+ L +++ +RIT GL + L
Sbjct: 321 GINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQL 380
Query: 495 KNLRSLTLESCKVTANDIKR 514
L+ L L ++T ++ R
Sbjct: 381 PCLKVLNLGLWQMTDSEKVR 400
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Substrate-recognition component of some SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin-protein ligase complexes. The SCF(FBXL14) complex acts by mediating ubiquitination and subsequent degradation of SNAI1. Bos taurus (taxid: 9913) |
| >sp|Q8N1E6|FXL14_HUMAN F-box/LRR-repeat protein 14 OS=Homo sapiens GN=FBXL14 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 89.0 bits (219), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 113/335 (33%), Positives = 178/335 (53%), Gaps = 30/335 (8%)
Query: 222 LHVFLTSLQKLTLLNLEGCP-VTAACLDS--LSALGSLFYLNLNRC-QLSDDGCEKFSK- 276
L + + + LNL GC +T L + +GSL LNL+ C Q++D + ++
Sbjct: 82 LSYVIQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQY 141
Query: 277 IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIGDEGLVNLTGLCN------ 327
+ L+VL LG + IT+ L+ + GL L+SLNL SC + D G+ +L G+
Sbjct: 142 LKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGC 201
Query: 328 --LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLD 382
L+ L L D Q + L+H+S GLT L +NLSF G ISD L L+ + SL+SLNL
Sbjct: 202 LGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLR 261
Query: 383 A-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDA 437
+ I+DTG+ A+ SL L+ LD+ F ++ D AY+ + L+SL +C ++D
Sbjct: 262 SCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDD 320
Query: 438 GV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPL 494
G+ + ++ + L LN+ Q +TDK LELI+ L+ L +++ +RIT GL + L
Sbjct: 321 GINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQL 380
Query: 495 KNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 529
L+ L L ++T D ++ D L + R
Sbjct: 381 PCLKVLNLGLWQMT--DSEKEARGDFSPLFTVRTR 413
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Substrate-recognition component of some SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin-protein ligase complexes. The SCF(FBXL14) complex acts by mediating ubiquitination and subsequent degradation of SNAI1. Homo sapiens (taxid: 9606) |
| >sp|Q723K6|INLA_LISMF Internalin-A OS=Listeria monocytogenes serotype 4b (strain F2365) GN=inlA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 124/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
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Mediates the entry of Listeria monocytogenes into cells. Listeria monocytogenes serotype 4b (strain F2365) (taxid: 265669) |
| >sp|Q8YA32|INLI_LISMO Internalin-I OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=inlI PE=4 SV=1 | Back alignment and function description |
|---|
Score = 71.6 bits (174), Expect = 1e-11, Method: Composition-based stats.
Identities = 124/471 (26%), Positives = 205/471 (43%), Gaps = 89/471 (18%)
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG---LM 155
+E L+ L NLTSL+ NN + L+NLV L+L + LVNL G L+
Sbjct: 175 IEGLQYLENLTSLNLSENN---ISDLAPLKDLVNLVSLNLSS----NRTLVNLSGVEDLV 227
Query: 156 KLESLNIKWCNCITD-SDMKPLSGLT-------NLKSLQI---SCSKVTDSGIAYLKGLS 204
L+ LN+ + D S + L L N+K+L++ + + + + YL+
Sbjct: 228 NLQELNVSANKALEDISQVASLPVLKEISAQGCNIKTLELKNPAGAVLPELETFYLQEND 287
Query: 205 ISSVIFI-----LCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 259
++++ + L ++ I+ L +L T L L + A+ L LG + L
Sbjct: 288 LTNLTSLAKLPKLKNLYIKGNASLKSLETLNGATKLQL----IDASNCTDLETLGDISGL 343
Query: 260 N-LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 318
+ L QLS GC K +I S LK L NL ++ DSC I D G
Sbjct: 344 SELEMIQLS--GCSKLKEITS------------------LKNLPNLVNITADSCAIEDLG 383
Query: 319 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI-NLSFTGISDGSLRKLAGLSSLK 377
+N L L+ L LSD + L +++ +T+L + L+ G S+ L L L+
Sbjct: 384 TLN--NLPKLQTLVLSDNE----NLTNITAITDLPQLKTLTLDGCGITSIGTLDNLPKLE 437
Query: 378 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 437
L+L QIT ++ +T L L++LD+ +T G L+ L L + L+D
Sbjct: 438 KLDLKENQITS--ISEITDLPRLSYLDVSVNNLTTIGD--LKKLPLLEWLNVSSNRLSD- 492
Query: 438 GVKHIKDLSSLTLLNLSQNC-------------------NLTDKTLELISGLTGLVSLNV 478
V + + SL +N+S N N + + +I + L ++
Sbjct: 493 -VSTLTNFPSLNYINISNNVIRTVGKMTELPSLKEFYAQNNSISDISMIHDMPNLRKVDA 551
Query: 479 SNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 529
SN+ IT+ G L L+SL + S ++T+ + DLP+L +F +
Sbjct: 552 SNNLITNIGT--FDNLPKLQSLDVHSNRITSTSV----IHDLPSLETFNAQ 596
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Unknown. A role in virulence could not be demonstrated. Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) (taxid: 169963) |
| >sp|G2K3G6|INLA_LISM4 Internalin-A OS=Listeria monocytogenes serotype 1/2a (strain 10403S) GN=inlA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 71.6 bits (174), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 185/419 (44%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T++ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
|
Mediates the entry of Listeria monocytogenes into cells. Listeria monocytogenes serotype 1/2a (strain 10403S) (taxid: 393133) |
| >sp|P35859|ALS_RAT Insulin-like growth factor-binding protein complex acid labile subunit OS=Rattus norvegicus GN=Igfals PE=1 SV=1 | Back alignment and function description |
|---|
Score = 69.3 bits (168), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 118/475 (24%), Positives = 184/475 (38%), Gaps = 49/475 (10%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLR-----GLSNLTSLSFRRNNAIT-AQGMKAFAGLINLV 134
NL SLDF + + L L GL NL L RN A G+ + +
Sbjct: 95 QNLSSLDF---LNLQGSWLRSLEPQALLGLQNLYYLHLERNRLRNLAVGLFTHTPSLASL 151
Query: 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
L R+ GL +GL L LN+ W + + D GL NL L ++ +K+T
Sbjct: 152 SLSSNLLGRLEEGL--FQGLSHLWDLNLGWNSLVVLPDTV-FQGLGNLHELVLAGNKLTY 208
Query: 195 SGIAYLKGL--------------SISSVIFILCSMIIRLFCLHVFLTS--------LQKL 232
A GL S+ + +F+ + +L+ +T+ ++ L
Sbjct: 209 LQPALFCGLGELRELDLSRNALRSVKANVFVHLPRLQKLYLDRNLITAVAPGAFLGMKAL 268
Query: 233 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 292
L+L V D+ L L L L ++ F + L+ L LG N I
Sbjct: 269 RWLDLSHNRVAGLMEDTFPGLLGLHVLRLAHNAIASLRPRTFKDLHFLEELQLGHNRIRQ 328
Query: 293 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 352
+GL LE L L+ I + + +GL N+ + LS + S R GL L
Sbjct: 329 LGERTFEGLGQLEVLTLNDNQITEVRVGAFSGLFNVAVMNLSGNCLRSLPERVFQGLDKL 388
Query: 353 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 412
S++L + + L AGLS L+ L L I+ +L L+ L LDL R+T
Sbjct: 389 HSLHLEHSCLGHVRLHTFAGLSGLRRLFLRDNSISSIEEQSLAGLSELLELDLTTNRLTH 448
Query: 413 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 472
+ +L L + LT + + L L++S N +L L S L
Sbjct: 449 LPRQLFQGLGHLEYLLLSYNQLTTLSAEVLGPLQRAFWLDISHN-HLETLAEGLFSSLGR 507
Query: 473 LVSLNVSNSRITS----AGLRHLK----------PLKNLRSLTLESCKVTANDIK 513
+ L++ N+ + + GL L PLK LR L++ V ++
Sbjct: 508 VRYLSLRNNSLQTFSPQPGLERLWLDANPWDCSCPLKALRDFALQNPGVVPRFVQ 562
|
May have an important role in regulating the access of circulating IGFs to the tissues. Rattus norvegicus (taxid: 10116) |
| >sp|P70389|ALS_MOUSE Insulin-like growth factor-binding protein complex acid labile subunit OS=Mus musculus GN=Igfals PE=2 SV=1 | Back alignment and function description |
|---|
Score = 68.9 bits (167), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 122/476 (25%), Positives = 180/476 (37%), Gaps = 51/476 (10%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLR-----GLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
NL SLDF + + L L GL NL L RN + + F +L
Sbjct: 95 QNLSSLDF---LNLQGSWLRSLEPQALLGLQNLYHLHLERN-LLRSLAAGLFRHTPSLAS 150
Query: 136 LDLER--CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
L L R+ GL +GL L LN+ W + + D GL NL L ++ +K+T
Sbjct: 151 LSLGNNLLGRLEEGL--FRGLSHLWDLNLGWNSLVVLPDTV-FQGLGNLHELVLAGNKLT 207
Query: 194 DSGIAYLKGL--------------SISSVIFILCSMIIRLFCLHVFLTS--------LQK 231
A L GL S+ + +FI + +L+ +T+ ++
Sbjct: 208 YLQPALLCGLGELRELDLSRNALRSVKANVFIHLPRLQKLYLDRNLITAVAPRAFLGMKA 267
Query: 232 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 291
L L+L V D+ L L L L ++ F + L+ L LG N I
Sbjct: 268 LRWLDLSHNRVAGLLEDTFPGLLGLHVLRLAHNAITSLRPRTFKDLHFLEELQLGHNRIR 327
Query: 292 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 351
+GL LE L L+ I + + GL N+ + LS + S GL
Sbjct: 328 QLGEKTFEGLGQLEVLTLNDNQIHEVKVGAFFGLFNVAVMNLSGNCLRSLPEHVFQGLGR 387
Query: 352 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 411
L S++L + + L AGLS L+ L L I+ +L L+ L LDL ++T
Sbjct: 388 LHSLHLEHSCLGRIRLHTFAGLSGLRRLFLRDNSISSIEEQSLAGLSELLELDLTANQLT 447
Query: 412 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 471
+ L L + LT + L L+LS N L L S L
Sbjct: 448 HLPRQLFQGLGQLEYLLLSNNQLTMLSEDVLGPLQRAFWLDLSHN-RLETPAEGLFSSLG 506
Query: 472 GLVSLNVSNSR----ITSAGLRHLK----------PLKNLRSLTLESCKVTANDIK 513
L LN+ N+ + GL L PLK LR L++ V ++
Sbjct: 507 RLRYLNLRNNSLQTFVPQPGLERLWLDANPWDCSCPLKALRDFALQNPGVVPRFVQ 562
|
May have an important role in regulating the access of circulating IGFs to the tissues. Mus musculus (taxid: 10090) |
| >sp|P0DJM0|INLA_LISMO Internalin-A OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=inlA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 68.9 bits (167), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 122/419 (29%), Positives = 185/419 (44%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T++ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459
|
Mediates the entry of L.monocytogenes into cells. Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) (taxid: 169963) |
| >sp|Q723X5|INLI_LISMF Internalin-I OS=Listeria monocytogenes serotype 4b (strain F2365) GN=inlI PE=3 SV=1 | Back alignment and function description |
|---|
Score = 68.2 bits (165), Expect = 1e-10, Method: Composition-based stats.
Identities = 120/466 (25%), Positives = 205/466 (43%), Gaps = 85/466 (18%)
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
+E L+ L NLTSL+ NN + L+NLV L+L R L ++GL+ L+
Sbjct: 172 IEGLQYLENLTSLNLSENN---ISDLAPIKDLVNLVSLNLSS-NRTLVNLSGVEGLVNLQ 227
Query: 159 SLNIKWCNCITD-SDMKPLSGLT-------NLKSLQI---SCSKVTDSGIAYLKGLSISS 207
LN+ + D S + L L N+K+L++ + + + + YL+ ++
Sbjct: 228 ELNVSANKALEDISQVAALPVLKEISAQGCNIKTLELDNPAGAILPELETFYLQENDLTD 287
Query: 208 VIFI-----LCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN-L 261
+ + L ++ I+ L +L+ T L L + A+ L LG + L+ L
Sbjct: 288 LTSLAKLPKLKNLYIKGNASLKSLATLKGATKLQL----IDASNCTDLETLGDISGLSEL 343
Query: 262 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 321
QLS GC K +I S LK L NL ++ DSC I D G +N
Sbjct: 344 EMIQLS--GCSKLKEITS------------------LKDLPNLVNITADSCAIEDLGTLN 383
Query: 322 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 381
L L+ L LSD + + + ++ + L+++ L GI+ S+ L L L+ L+L
Sbjct: 384 --NLPKLQTLILSDNK-DLTNINAITDMPQLKTLALDGCGIT--SIGTLDNLPKLEKLDL 438
Query: 382 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 441
Q+T ++ + L L++LD+ +T G L+ L L + L+D V
Sbjct: 439 KENQLTS--ISEINDLPRLSYLDVSVNYLTTIGE--LKKLPLLEWLNVSSNRLSD--VST 492
Query: 442 IKDLSSLTLLNLS---------------------QNCNLTDKTLELISGLTGLVSLNVSN 480
+ + SL +N+S QN N++D + +I + L ++ SN
Sbjct: 493 LTNFPSLNYINVSNNVIRTVGKMTELPSLKEFYAQNNNVSD--ISMIHDMPNLRKVDASN 550
Query: 481 SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSF 526
+ IT+ G L L++L + S ++T + DLP+L +F
Sbjct: 551 NLITNIGT--FDNLPKLQNLDVHSNRITNTSV----IHDLPSLETF 590
|
Unknown. A role in virulence could not be demonstrated. Listeria monocytogenes serotype 4b (strain F2365) (taxid: 265669) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 529 | ||||||
| 225463572 | 578 | PREDICTED: F-box/LRR-repeat protein 14 [ | 0.950 | 0.870 | 0.763 | 0.0 | |
| 449436168 | 578 | PREDICTED: F-box/LRR-repeat protein 14-l | 0.950 | 0.870 | 0.744 | 0.0 | |
| 359484681 | 578 | PREDICTED: insulin-like growth factor-bi | 0.950 | 0.870 | 0.722 | 0.0 | |
| 356519276 | 577 | PREDICTED: F-box/LRR-repeat protein 14-l | 0.948 | 0.870 | 0.757 | 0.0 | |
| 224120462 | 576 | predicted protein [Populus trichocarpa] | 0.948 | 0.871 | 0.705 | 0.0 | |
| 357458869 | 585 | F-box/LRR-repeat protein [Medicago trunc | 0.950 | 0.859 | 0.713 | 0.0 | |
| 182407840 | 580 | F-box-containing protein 1 [Malus x dome | 0.950 | 0.867 | 0.710 | 0.0 | |
| 388500850 | 577 | unknown [Medicago truncatula] | 0.950 | 0.871 | 0.714 | 0.0 | |
| 297844484 | 578 | leucine-rich repeat family protein [Arab | 0.948 | 0.868 | 0.727 | 0.0 | |
| 357468127 | 573 | F-box/LRR-repeat protein [Medicago trunc | 0.939 | 0.867 | 0.711 | 0.0 |
| >gi|225463572|ref|XP_002270172.1| PREDICTED: F-box/LRR-repeat protein 14 [Vitis vinifera] gi|297743556|emb|CBI36423.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 748 bits (1930), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 404/529 (76%), Positives = 459/529 (86%), Gaps = 26/529 (4%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
MLPRDISQQIFNELV+S+CLT+VSL+AF+DCALQD+ LG+YPGV+D WMDVI+SQG SLL
Sbjct: 76 MLPRDISQQIFNELVFSQCLTDVSLKAFQDCALQDIYLGEYPGVSDSWMDVISSQGVSLL 135
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVDLSGS++T+SGLIHLKDC+NLQ+L+ N+C QISD GL+H+ GLSNLT+LSFRRNNAIT
Sbjct: 136 SVDLSGSEITNSGLIHLKDCTNLQALNLNYCDQISDHGLKHISGLSNLTTLSFRRNNAIT 195
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
AQGM AF+ L+NLVKLDLERC IHGGL++LKGL KLESLNI C+CITD+D+KPLSGLT
Sbjct: 196 AQGMSAFSSLVNLVKLDLERCPGIHGGLIHLKGLTKLESLNINMCHCITDADLKPLSGLT 255
Query: 181 NLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC 240
NLK L+IS SKVTD G+AYLKGL KL LLN+EGC
Sbjct: 256 NLKGLEISRSKVTDDGVAYLKGL--------------------------HKLALLNMEGC 289
Query: 241 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 300
PVTAACL+SLS L SL LNLNR LSDDGCE F++ +L+VLNLGFN++TD CLVHLKG
Sbjct: 290 PVTAACLESLSDLPSLLSLNLNRSMLSDDGCENFARQENLRVLNLGFNDLTDACLVHLKG 349
Query: 301 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 360
LTNLESLNLDSC I DEGL NLTGL +LKCLELSDT+VGS+GLRHLSGL NLESINLSFT
Sbjct: 350 LTNLESLNLDSCRICDEGLANLTGLRHLKCLELSDTEVGSNGLRHLSGLANLESINLSFT 409
Query: 361 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 420
++D LRKL+ LSSLKSLNLDARQITD GLAALTSLTGLTHLDLFGARITDSG +YLRN
Sbjct: 410 AVTDSGLRKLSALSSLKSLNLDARQITDAGLAALTSLTGLTHLDLFGARITDSGTSYLRN 469
Query: 421 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 480
FKNL+SLEICGGGLTDAGVK+IKDL+ LT+LNLSQNCNLTDK+LELISGLT LVSL+VSN
Sbjct: 470 FKNLQSLEICGGGLTDAGVKNIKDLTCLTVLNLSQNCNLTDKSLELISGLTALVSLSVSN 529
Query: 481 SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 529
SRIT+AGL+HLK LKNL+SLTL+SCKVT NDIK+LQS+DLPNLVSFRPE
Sbjct: 530 SRITNAGLQHLKQLKNLKSLTLDSCKVTVNDIKKLQSKDLPNLVSFRPE 578
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449436168|ref|XP_004135866.1| PREDICTED: F-box/LRR-repeat protein 14-like [Cucumis sativus] gi|449509305|ref|XP_004163550.1| PREDICTED: F-box/LRR-repeat protein 14-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 737 bits (1903), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/529 (74%), Positives = 451/529 (85%), Gaps = 26/529 (4%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
MLPRD+SQ I NELVYS+ LT++S++AFRDCALQDL G+ PGVND W+DVI+SQGSS+L
Sbjct: 76 MLPRDLSQLILNELVYSQLLTDISIQAFRDCALQDLHFGECPGVNDAWIDVISSQGSSVL 135
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVDLSGS+VTDSGL++L++CSNLQSL+ NFC ISD GL H+ G S LTSLSFR+N+ IT
Sbjct: 136 SVDLSGSEVTDSGLMNLRNCSNLQSLNLNFCEHISDRGLAHIGGFSRLTSLSFRKNSEIT 195
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
AQGM FA L+NL++LDLE+C IHGGLV+L+GL KLESLNIKWCNCITDSD+KPLSGLT
Sbjct: 196 AQGMSVFAHLVNLIRLDLEKCPGIHGGLVHLQGLRKLESLNIKWCNCITDSDIKPLSGLT 255
Query: 181 NLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC 240
NLK LQISCSKVTD+GIAYLKGL KL+LLNLEGC
Sbjct: 256 NLKGLQISCSKVTDAGIAYLKGL--------------------------HKLSLLNLEGC 289
Query: 241 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 300
PVTAACL +LSALG+L YLNL+RC ++DDG E+FS +G+LK+LNLGFN+ITDECLVHLKG
Sbjct: 290 PVTAACLYTLSALGALQYLNLSRCHITDDGSEQFSGLGALKILNLGFNDITDECLVHLKG 349
Query: 301 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 360
LTNLESLNLDSC I D+GLVNL L LKCLELSDT VGS+GLRHLSGL NLE +NLSFT
Sbjct: 350 LTNLESLNLDSCRIEDDGLVNLKALHRLKCLELSDTDVGSNGLRHLSGLFNLEKLNLSFT 409
Query: 361 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 420
++D L+KL+GLSSLKSLNLD RQITD GLA+LT L GLTHLDLFGARITDSG YLRN
Sbjct: 410 VVTDIGLKKLSGLSSLKSLNLDTRQITDIGLASLTGLVGLTHLDLFGARITDSGTNYLRN 469
Query: 421 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 480
FKNL+SLEICGGGLTDAGVK+IKDLSSL +LNLSQN NLTDK+LELISGLTGLVSLN+SN
Sbjct: 470 FKNLQSLEICGGGLTDAGVKNIKDLSSLMVLNLSQNGNLTDKSLELISGLTGLVSLNISN 529
Query: 481 SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 529
SRITSAGLRHLK LKNL+ LTLE+C+V+A+DIK+LQS DLPNLVSFRPE
Sbjct: 530 SRITSAGLRHLKTLKNLKQLTLEACRVSASDIKKLQSTDLPNLVSFRPE 578
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359484681|ref|XP_002262830.2| PREDICTED: insulin-like growth factor-binding protein complex acid labile subunit-like [Vitis vinifera] gi|296084545|emb|CBI25566.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 732 bits (1889), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/529 (72%), Positives = 442/529 (83%), Gaps = 26/529 (4%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
MLPRDISQQIF+ V S CLT SLEAFRDCA+QD+ LG+YP VND WMD+I+SQG SLL
Sbjct: 76 MLPRDISQQIFDNFVDSHCLTSASLEAFRDCAIQDVNLGEYPEVNDSWMDIISSQGLSLL 135
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVDLSGS VTD GL LKDCSN+Q L FN+C QIS+ GL+++ GLSNLTSLSF+++N +T
Sbjct: 136 SVDLSGSSVTDDGLSLLKDCSNIQVLSFNYCDQISEPGLKNISGLSNLTSLSFKKSNTVT 195
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+GM+AF+ L+NL KLDLERC+RIHGGL++LKGL KLESLNI++C CITDSD+K LSGLT
Sbjct: 196 AEGMRAFSSLVNLAKLDLERCSRIHGGLIHLKGLTKLESLNIRYCKCITDSDLKALSGLT 255
Query: 181 NLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC 240
+LK LQ+SCS +TD GI+YLKGL KL LL++EGC
Sbjct: 256 SLKELQMSCSNITDIGISYLKGLC--------------------------KLMLLDVEGC 289
Query: 241 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 300
VT +CLDSLSAL +L YLNLNRC LSD GCEKFS + +LKVLN+GFN ITD CLVHLKG
Sbjct: 290 HVTTSCLDSLSALVALSYLNLNRCGLSDVGCEKFSGLKNLKVLNMGFNNITDACLVHLKG 349
Query: 301 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 360
LTNLESLNLDSC I DEGL NLTGL LKCLELSDT+VGS+GL HLSGLT LES+NLSFT
Sbjct: 350 LTNLESLNLDSCSIEDEGLANLTGLSLLKCLELSDTKVGSNGLCHLSGLTKLESLNLSFT 409
Query: 361 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 420
++D L+KL GL+SLKSLNLDARQITD GLAA+TSLTGLTHLDLFGARI+D+G LR+
Sbjct: 410 LVTDSGLKKLCGLTSLKSLNLDARQITDAGLAAITSLTGLTHLDLFGARISDAGTNCLRH 469
Query: 421 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 480
FKNL++LEICGGGLTDAGVK+IK L+SLTLLNLSQNCNLTDKTLE+ISGLT LVSLNVSN
Sbjct: 470 FKNLQTLEICGGGLTDAGVKNIKGLASLTLLNLSQNCNLTDKTLEMISGLTALVSLNVSN 529
Query: 481 SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 529
SRIT+ GL+HLKPLKNL SL+LESCKVTA++I++LQS LPNLVSFRPE
Sbjct: 530 SRITNNGLQHLKPLKNLLSLSLESCKVTASEIRKLQSTALPNLVSFRPE 578
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356519276|ref|XP_003528299.1| PREDICTED: F-box/LRR-repeat protein 14-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 720 bits (1858), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 400/528 (75%), Positives = 439/528 (83%), Gaps = 26/528 (4%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
MLPRDISQ IFN LVYSR LT SLEAFRDCALQDL LG+Y GVND WM VI+SQGSSLL
Sbjct: 75 MLPRDISQLIFNNLVYSRRLTSASLEAFRDCALQDLYLGEYDGVNDNWMGVISSQGSSLL 134
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVDLSGSDVTD GL +LKDC +L SL+ N+C QISD GLE + GLSNLTSLSFRRN++I+
Sbjct: 135 SVDLSGSDVTDFGLTYLKDCESLISLNLNYCDQISDRGLECISGLSNLTSLSFRRNDSIS 194
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
AQGM AF+GL+NLVKLDLERC IHGGLV+L+GL KLESLN+KWCNCITD DMKPLS L
Sbjct: 195 AQGMSAFSGLVNLVKLDLERCPGIHGGLVHLRGLTKLESLNLKWCNCITDYDMKPLSELA 254
Query: 181 NLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC 240
+LKSL+IS SKVTD GI++LKGL QKL LLNLEGC
Sbjct: 255 SLKSLEISSSKVTDFGISFLKGL--------------------------QKLALLNLEGC 288
Query: 241 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 300
VTAACLDSL+ L +L LNLNRC LSD+GC+K S++ +LKVLNLGFN ITD CLVHLKG
Sbjct: 289 LVTAACLDSLAELPALSNLNLNRCNLSDNGCKKISRLENLKVLNLGFNVITDACLVHLKG 348
Query: 301 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 360
LT LESLNLDSC IGDEGLVNL GL L CLELSDT+VGS+GL HLSGL++L+ INLSFT
Sbjct: 349 LTKLESLNLDSCKIGDEGLVNLAGLEQLNCLELSDTEVGSNGLHHLSGLSSLQKINLSFT 408
Query: 361 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 420
ISD SLRKL+GLSSLKSLNLDA QITD GLA LTSLTGLT LDLFGARITD G YL+
Sbjct: 409 MISDSSLRKLSGLSSLKSLNLDAYQITDAGLANLTSLTGLTDLDLFGARITDFGTNYLKK 468
Query: 421 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 480
FKNLRSLEICGG LTDAGVK+IK+LSSL LNLSQN NLTDKTLELISGLTGLVSLNVSN
Sbjct: 469 FKNLRSLEICGGVLTDAGVKNIKELSSLVCLNLSQNSNLTDKTLELISGLTGLVSLNVSN 528
Query: 481 SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRP 528
SRIT+AGL+HLK LKNLRSLTLESCKVTANDIK+L+S LPNLVSFRP
Sbjct: 529 SRITNAGLQHLKTLKNLRSLTLESCKVTANDIKKLKSIYLPNLVSFRP 576
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224120462|ref|XP_002331054.1| predicted protein [Populus trichocarpa] gi|222872984|gb|EEF10115.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 709 bits (1830), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/529 (70%), Positives = 433/529 (81%), Gaps = 27/529 (5%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
MLPRD+SQQIFNELV S LT SLEAFRDCALQD+ LG+YPGV D WMDVI+SQGSSLL
Sbjct: 75 MLPRDLSQQIFNELVISHSLTAASLEAFRDCALQDVLLGEYPGVMDSWMDVISSQGSSLL 134
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVDLS SDVTD+GL LKDCSNLQ++ N+C ISD GL+HL GL+N+TSLS +++ ++T
Sbjct: 135 SVDLSDSDVTDAGLGLLKDCSNLQAIALNYCNNISDNGLKHLSGLTNITSLSLKKSCSVT 194
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+GM+AF+ L+NL LD+ERC+ IHGGLV+LKGL KLESLNI+ C CITD DMK +SGLT
Sbjct: 195 AEGMRAFSTLLNLENLDMERCSGIHGGLVHLKGLKKLESLNIRCCKCITDMDMKAISGLT 254
Query: 181 NLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC 240
NLK LQIS + VTD G++YL+GL QKL +LNLEGC
Sbjct: 255 NLKELQISNTNVTDVGVSYLRGL--------------------------QKLIMLNLEGC 288
Query: 241 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 300
+T ACLDS+SAL +L YLNLNRC L DDGC+KFS + +LKVL+L FN++TD CLVHLKG
Sbjct: 289 NITTACLDSISALATLAYLNLNRCHLPDDGCDKFSGLKNLKVLSLAFNDVTDACLVHLKG 348
Query: 301 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 360
L NLESLNLDSC IGDEG+ NL GL LK LELSDT VGSSGLRHLSG+ +LE++NLSFT
Sbjct: 349 LKNLESLNLDSCRIGDEGIANLAGL-PLKSLELSDTIVGSSGLRHLSGIPHLENLNLSFT 407
Query: 361 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 420
++DG LRKL+GL+SL+SLNLDARQITD GL ALTSLTGLT LDLFGARITDSG L+
Sbjct: 408 LVTDGGLRKLSGLTSLRSLNLDARQITDAGLTALTSLTGLTRLDLFGARITDSGTNCLKY 467
Query: 421 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 480
FKNL+SLEICGGGLTDAGVK+IKDL LT+LNLSQN NLTDKTLELISGLT LVSLNVSN
Sbjct: 468 FKNLKSLEICGGGLTDAGVKNIKDLVHLTVLNLSQNTNLTDKTLELISGLTELVSLNVSN 527
Query: 481 SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 529
S IT+ GLR+LKPLKNLR+LTLESCKVTA++IK+LQS +LPNL S RPE
Sbjct: 528 SLITNEGLRYLKPLKNLRALTLESCKVTASEIKKLQSTELPNLASVRPE 576
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357458869|ref|XP_003599715.1| F-box/LRR-repeat protein [Medicago truncatula] gi|355488763|gb|AES69966.1| F-box/LRR-repeat protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 709 bits (1830), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/537 (71%), Positives = 429/537 (79%), Gaps = 34/537 (6%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
MLPRDISQQI N LVYSR LT SLEAFRDCALQDL LG+Y GV+D WMDVI+SQGSSLL
Sbjct: 75 MLPRDISQQILNNLVYSRRLTGDSLEAFRDCALQDLYLGEYAGVDDSWMDVISSQGSSLL 134
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVDLS SDVTD GL +L+DC +L SL+ N+C QISD GLE + GLSNLTSLSFRRN++I+
Sbjct: 135 SVDLSASDVTDFGLTYLQDCRSLISLNLNYCDQISDHGLECISGLSNLTSLSFRRNDSIS 194
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
AQGM AF+ L+NLVKLDLERC IHGG V+L+GL KLESLN+KWCNCITDSD+KPLS L
Sbjct: 195 AQGMSAFSRLVNLVKLDLERCPGIHGGTVHLQGLTKLESLNMKWCNCITDSDIKPLSELA 254
Query: 181 NLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC 240
+L SL+ISCSKVTD GI++L+GL QKL LLNLEGC
Sbjct: 255 SLTSLEISCSKVTDFGISFLRGL--------------------------QKLALLNLEGC 288
Query: 241 PVTAACLDSLSA--------LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 292
VT+ACLDSLS L +L LNLNRC +SD GCE+FS++ LKVLNLGFN+I D
Sbjct: 289 LVTSACLDSLSGCHEHTIPKLPALSNLNLNRCNISDRGCERFSRLEKLKVLNLGFNDIGD 348
Query: 293 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 352
CL H+KGLT LESLNLDSC IGDEGL NL G L CLELSDT+VG+ GL HLSGL++L
Sbjct: 349 RCLAHMKGLTKLESLNLDSCKIGDEGLENLAGHKQLICLELSDTEVGNHGLEHLSGLSSL 408
Query: 353 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 412
E INLSFT +SD LRKL GLSSLKSLNLDA QITD GLA LTSLTGLT LDLFGARITD
Sbjct: 409 EKINLSFTVVSDSGLRKLCGLSSLKSLNLDAYQITDAGLATLTSLTGLTDLDLFGARITD 468
Query: 413 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 472
G YL+ FKNLRSLEIC GGLTDAGVK+IK+LSSL LNLSQN NLTDKT+ELI+GLT
Sbjct: 469 VGTNYLKKFKNLRSLEICSGGLTDAGVKNIKELSSLMCLNLSQNSNLTDKTVELIAGLTA 528
Query: 473 LVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 529
LVSLN+SN+RITSAGL+HLK LKNLRSLTLESCKVTANDIK+ + LPNLVSFRPE
Sbjct: 529 LVSLNLSNTRITSAGLQHLKTLKNLRSLTLESCKVTANDIKKFKLIHLPNLVSFRPE 585
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|182407840|gb|ACB87911.1| F-box-containing protein 1 [Malus x domestica] | Back alignment and taxonomy information |
|---|
Score = 707 bits (1824), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/529 (71%), Positives = 446/529 (84%), Gaps = 26/529 (4%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
MLPRD+SQQIFNELV S LT+VSLEAFRDCAL+D+ LG+YP V D WM VI+SQGSSLL
Sbjct: 78 MLPRDVSQQIFNELVCSNSLTDVSLEAFRDCALEDIGLGEYPDVKDSWMGVISSQGSSLL 137
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVDLSGS+VTDSGL LK CSNLQ+L +N+C +S+ GL+H+ GLSNLTSLSF+R++AI+
Sbjct: 138 SVDLSGSEVTDSGLALLKGCSNLQALAYNYCDHVSEQGLKHISGLSNLTSLSFKRSDAIS 197
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+GM+AF+GL+NL KLDLERC+ IHGG V+LKGL KL+SLN++ C CITDSD+K +SGL
Sbjct: 198 AEGMRAFSGLLNLEKLDLERCSAIHGGFVHLKGLKKLKSLNVRCCRCITDSDLKTISGLI 257
Query: 181 NLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC 240
+L LQ+S +TDSGI+YLKGL KL +LNLEGC
Sbjct: 258 DLNELQLSNCNITDSGISYLKGL--------------------------HKLRMLNLEGC 291
Query: 241 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 300
VTA+CL S+SAL +L YLNLNRC LSD+GC+KFS + +LKVL+LGFNEITD CL++LKG
Sbjct: 292 NVTASCLQSISALVALAYLNLNRCSLSDEGCDKFSGLTNLKVLSLGFNEITDACLMYLKG 351
Query: 301 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 360
LT+LESLNLDSC IGDEGL NL GL +LK LELSDT+VGS+GLRHLSGL NLES+NLSFT
Sbjct: 352 LTSLESLNLDSCKIGDEGLANLAGLTHLKNLELSDTEVGSNGLRHLSGLKNLESLNLSFT 411
Query: 361 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 420
++D SL++L+GL+SLKSLNLDARQITD GLAA+TSLTGLTHLDLFGARI+DSGA +L+
Sbjct: 412 LVTDSSLKRLSGLTSLKSLNLDARQITDAGLAAITSLTGLTHLDLFGARISDSGANHLKY 471
Query: 421 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 480
FKNL+SLEICGGGLTDAGVK+IKDL LT LN+SQNCNLT+K+LELISGLT LVSLNVSN
Sbjct: 472 FKNLQSLEICGGGLTDAGVKNIKDLVCLTWLNISQNCNLTNKSLELISGLTALVSLNVSN 531
Query: 481 SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 529
SRIT+ GL+HLKPLKNLRSLTLESCKVTA++I++LQS LPNLVSFRPE
Sbjct: 532 SRITNEGLQHLKPLKNLRSLTLESCKVTASEIRKLQSDALPNLVSFRPE 580
|
Source: Malus x domestica Species: Malus x domestica Genus: Malus Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388500850|gb|AFK38491.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 705 bits (1819), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/529 (71%), Positives = 424/529 (80%), Gaps = 26/529 (4%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
MLPRDISQQI N LVYSR LT SLEAFRDCALQDL LG+Y GV+D WMDVI+SQGSSLL
Sbjct: 75 MLPRDISQQILNNLVYSRRLTGDSLEAFRDCALQDLYLGEYAGVDDSWMDVISSQGSSLL 134
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVDLS SDVTD GL +L+DC +L SL+ N+C QISD GLE + GLSNLTSLSFRRN++I+
Sbjct: 135 SVDLSASDVTDFGLTYLQDCRSLISLNLNYCDQISDHGLECISGLSNLTSLSFRRNDSIS 194
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
AQGM AF+ L+NLVKLDLERC IHGG V+L+GL KLESLN+KWCNCITDSD+KPLS L
Sbjct: 195 AQGMSAFSRLVNLVKLDLERCPGIHGGTVHLQGLTKLESLNMKWCNCITDSDIKPLSELA 254
Query: 181 NLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC 240
+L SL+ISCSKVTD GI++L+GL QKL LLNLEGC
Sbjct: 255 SLTSLEISCSKVTDFGISFLRGL--------------------------QKLALLNLEGC 288
Query: 241 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 300
VT+ACLDSLS L +L LNLNRC +S GCE+FS++ LKVLNLGFN+I D CL H+KG
Sbjct: 289 LVTSACLDSLSELPALSNLNLNRCNISGRGCERFSRLEKLKVLNLGFNDIGDRCLAHMKG 348
Query: 301 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 360
LT LESLNLDSC IGDEGL NL G L CLELSDT+VG+ GL HLSGL++LE INLSFT
Sbjct: 349 LTKLESLNLDSCKIGDEGLENLAGHKQLICLELSDTEVGNHGLEHLSGLSSLEKINLSFT 408
Query: 361 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 420
+SD LRKL GLSSLKSLNLDA QITD GLA LTSLTGLT LDLFGARITD G YL+
Sbjct: 409 VVSDSGLRKLCGLSSLKSLNLDAYQITDAGLATLTSLTGLTDLDLFGARITDVGTNYLKK 468
Query: 421 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 480
FKNLR LEIC GGLTDAGVK+IK+LSSL LNLSQN NLTDKT+ELI+GLT LVSLN+SN
Sbjct: 469 FKNLRPLEICSGGLTDAGVKNIKELSSLMCLNLSQNSNLTDKTVELIAGLTALVSLNLSN 528
Query: 481 SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 529
+RIT AGL+HLK LKNLR LTLESCKVT NDIK+ + LPNLVSFRPE
Sbjct: 529 TRITFAGLQHLKTLKNLRFLTLESCKVTVNDIKKFKLIHLPNLVSFRPE 577
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297844484|ref|XP_002890123.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata] gi|297335965|gb|EFH66382.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 703 bits (1814), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/529 (72%), Positives = 449/529 (84%), Gaps = 27/529 (5%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
LPRDISQQIF+ELVYS+ LT SLEAFRDCA+QDLCLG+YPGVND WMDVI+SQ +SLLS
Sbjct: 76 LPRDISQQIFDELVYSQRLTLKSLEAFRDCAIQDLCLGEYPGVNDDWMDVISSQSTSLLS 135
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
VD SGSD+TDSGL+ LK C+NL+SL+FNFC QIS+ GLEHL GLSNLTSLSFRRN AITA
Sbjct: 136 VDFSGSDITDSGLVSLKGCTNLESLNFNFCDQISNRGLEHLSGLSNLTSLSFRRNAAITA 195
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
QGM+A + L+N+ KLDLE+C IHGGLV+L+GL KLESLNIKWCNCITD+DM+PLS LTN
Sbjct: 196 QGMRALSNLVNMKKLDLEKCPGIHGGLVHLRGLTKLESLNIKWCNCITDADMEPLSELTN 255
Query: 182 LKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC- 240
L+SLQI CS++TD GI+YLKGL+ +++ + EGC
Sbjct: 256 LRSLQICCSRITDIGISYLKGLNKLNLLNL--------------------------EGCR 289
Query: 241 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 300
VTAACLD+L+AL L +LNLNRC SD GCEKFS + +LK+LNLG N IT+ CLVHL+G
Sbjct: 290 HVTAACLDTLTALTGLMFLNLNRCNFSDSGCEKFSDLINLKILNLGMNSITNSCLVHLRG 349
Query: 301 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 360
LT LESLNLDSC IGDEGLV+L+G+ LK LELSDT+VGS+GLRHLSGL+NLESINLSFT
Sbjct: 350 LTKLESLNLDSCRIGDEGLVHLSGMLELKSLELSDTEVGSNGLRHLSGLSNLESINLSFT 409
Query: 361 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 420
++D LRKL+GL+SL++LNLDAR +TD GL+ALTSLTGLTHLDLFGARITDSG +LRN
Sbjct: 410 VVTDSGLRKLSGLTSLRTLNLDARHVTDAGLSALTSLTGLTHLDLFGARITDSGTNHLRN 469
Query: 421 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 480
K L+SLEICGGGLTD GVK+IKDLSSLTLLNLSQN NLTDKTLELISGLTGLVSLNVSN
Sbjct: 470 LKKLQSLEICGGGLTDTGVKNIKDLSSLTLLNLSQNSNLTDKTLELISGLTGLVSLNVSN 529
Query: 481 SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 529
SR++S+GLRHLKPLKNLRSLTLESCK++ANDI++LQ+ DLPNLV+FRPE
Sbjct: 530 SRVSSSGLRHLKPLKNLRSLTLESCKLSANDIRKLQATDLPNLVNFRPE 578
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357468127|ref|XP_003604348.1| F-box/LRR-repeat protein [Medicago truncatula] gi|355505403|gb|AES86545.1| F-box/LRR-repeat protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 698 bits (1802), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/531 (71%), Positives = 423/531 (79%), Gaps = 34/531 (6%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
MLPRDISQQI N LVYSR LT SLEAFRDCALQDL LG+Y GV+D WMDVI+SQGSSLL
Sbjct: 75 MLPRDISQQILNNLVYSRRLTGDSLEAFRDCALQDLYLGEYAGVDDSWMDVISSQGSSLL 134
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC--IQISDGGLEHLRGLSNLTSLSFRRNNA 118
SVDLS SDVTD GL +L+DC +L SL+ N+C QI D L SNLTSLSFRRN++
Sbjct: 135 SVDLSASDVTDFGLTYLQDCRSLISLNLNYCDKFQIMDWSL------SNLTSLSFRRNDS 188
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
I+AQGM AF+ L+NLVKLDLERC IHGG V+L+GL KLESLN+KWCNCITDSD+KPLS
Sbjct: 189 ISAQGMSAFSRLVNLVKLDLERCPGIHGGTVHLQGLTKLESLNMKWCNCITDSDIKPLSE 248
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLE 238
L +L SL+ISCSKVTD GI++L+GL QKL LLNLE
Sbjct: 249 LASLTSLEISCSKVTDFGISFLRGL--------------------------QKLALLNLE 282
Query: 239 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 298
GC VT+ACLDSLS L +L LNLNRC +SD GCE+FS++ LKVLNLGFN+I D CL H+
Sbjct: 283 GCLVTSACLDSLSELPALSNLNLNRCNISDRGCERFSRLEKLKVLNLGFNDIGDRCLAHM 342
Query: 299 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 358
KGLT LESLNLDSC IGDEGL NL G L CLELSDT+VG+ GL HLSGL++LE INLS
Sbjct: 343 KGLTKLESLNLDSCKIGDEGLENLAGHKQLICLELSDTEVGNHGLEHLSGLSSLEKINLS 402
Query: 359 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 418
FT +SD LRKL GLSSLKSLNLDA QITD GLA LTSLTGLT LDLFGARITD G YL
Sbjct: 403 FTVVSDSGLRKLCGLSSLKSLNLDAYQITDAGLATLTSLTGLTDLDLFGARITDVGTNYL 462
Query: 419 RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 478
+ FKNLRSLEIC GGLTDAGVK+IK+LSSL LNLSQN NLTDKT+ELI+GLT LVSLN+
Sbjct: 463 KKFKNLRSLEICSGGLTDAGVKNIKELSSLMCLNLSQNSNLTDKTVELIAGLTALVSLNL 522
Query: 479 SNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 529
SN+RITSAGL+HLK LKNLRSLTLESCKVTANDIK+ + LPNLVSFRPE
Sbjct: 523 SNTRITSAGLQHLKTLKNLRSLTLESCKVTANDIKKFKLIHLPNLVSFRPE 573
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 529 | ||||||
| TAIR|locus:2036199 | 585 | AT1G15740 [Arabidopsis thalian | 0.841 | 0.760 | 0.553 | 3e-117 | |
| ZFIN|ZDB-GENE-030131-3556 | 400 | fbxl14b "F-box and leucine-ric | 0.580 | 0.767 | 0.298 | 2.9e-18 | |
| ZFIN|ZDB-GENE-030131-5920 | 411 | fbxl14a "F-box and leucine-ric | 0.580 | 0.746 | 0.295 | 2.2e-17 | |
| TAIR|locus:2138131 | 597 | AT4G23840 "AT4G23840" [Arabido | 0.807 | 0.715 | 0.221 | 1.5e-16 | |
| UNIPROTKB|F1NMM1 | 345 | FBXL14 "Uncharacterized protei | 0.576 | 0.884 | 0.294 | 4.8e-16 | |
| UNIPROTKB|Q17R01 | 400 | FBXL14 "F-box/LRR-repeat prote | 0.551 | 0.73 | 0.273 | 1.8e-15 | |
| MGI|MGI:2141676 | 400 | Fbxl14 "F-box and leucine-rich | 0.551 | 0.73 | 0.273 | 1.8e-15 | |
| RGD|1305523 | 400 | Fbxl14 "F-box and leucine-rich | 0.551 | 0.73 | 0.273 | 1.8e-15 | |
| UNIPROTKB|Q8N1E6 | 418 | FBXL14 "F-box/LRR-repeat prote | 0.551 | 0.698 | 0.273 | 2.1e-15 | |
| DICTYBASE|DDB_G0291424 | 902 | DDB_G0291424 "Transcription fa | 0.508 | 0.298 | 0.275 | 6.4e-14 |
| TAIR|locus:2036199 AT1G15740 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1155 (411.6 bits), Expect = 3.0e-117, P = 3.0e-117
Identities = 250/452 (55%), Positives = 311/452 (68%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
++L S+DF+ I+D GL L+G +NL SL+F + I+ +G+ +GL NL L R
Sbjct: 138 TSLLSVDFSGS-DITDSGLVSLKGCTNLESLNFNFCDQISNRGLVHLSGLSNLTSLSFRR 196
Query: 141 CTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIA 198
I G+ L L+ L+ L+++ C I D + L LT L+SL I C+ +TD+ +
Sbjct: 197 NAAITAQGMRALSNLVNLKKLDLEKCPGI-DGGLVHLRALTKLESLNIKWCNCITDADME 255
Query: 199 YLKGLSISSVIFILCSMIIRLFCLHVFXXXXXXXXXXXXEGCP-VTAACLDSLSALGSLF 257
L L+ + I CS I + ++ EGC VTAACLD+L+AL L
Sbjct: 256 PLSVLTNLRSLQICCSKITDIGISYL--KGLNKLNLLNLEGCRHVTAACLDTLTALAGLM 313
Query: 258 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 317
YLNLNRC SD GCEKFS + +LK+LNLG N IT+ CLVHLKGLT LESLNLDSC IGDE
Sbjct: 314 YLNLNRCNFSDSGCEKFSDLINLKILNLGMNNITNSCLVHLKGLTKLESLNLDSCRIGDE 373
Query: 318 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 377
GLV+L+G+ LK LELSDT+VGS+GLRHLSGL+NLESINLSFT ++D LRKL+GL+SL+
Sbjct: 374 GLVHLSGMLELKSLELSDTEVGSNGLRHLSGLSNLESINLSFTVVTDSGLRKLSGLTSLR 433
Query: 378 SLNLDARQIXXXXXXXXXXXXXXXXXDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 437
+LNLDAR + DLFGARITDSG +LRN K L+SLEICGGGLTD
Sbjct: 434 TLNLDARHVTDAGLSALTSLTGLTHLDLFGARITDSGTNHLRNLKKLQSLEICGGGLTDT 493
Query: 438 GVKHIKDXXXXXXXXXXXXXXXTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 497
GVK+IKD TDKTLELISGLTGLVSLNVSNSR++S+GLRHLKPLKNL
Sbjct: 494 GVKNIKDLSSLTLLNLSQNSNLTDKTLELISGLTGLVSLNVSNSRVSSSGLRHLKPLKNL 553
Query: 498 RSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 529
RSLTLESCK++ANDI++LQ+ DLPNLV+FRPE
Sbjct: 554 RSLTLESCKLSANDIRKLQATDLPNLVNFRPE 585
|
|
| ZFIN|ZDB-GENE-030131-3556 fbxl14b "F-box and leucine-rich repeat protein 14b" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 244 (91.0 bits), Expect = 2.9e-18, P = 2.9e-18
Identities = 104/348 (29%), Positives = 162/348 (46%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVN--LKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + GL + ++ + L
Sbjct: 68 RGIRRVQILSLRRSLSYVIQGMP------NIESLNLSGCYNLTDNGLGHAFVQEIPSLRV 121
Query: 160 LNIKWCNCITDSDMKPLSG-LTNLKSLQIS-CSKVTDSGIAYLKGLSISSVIFILCSMII 217
LN+ C ITDS + ++ L NL+ L++ CS +T++G+ L I+ + L S+ +
Sbjct: 122 LNLSLCKQITDSSLGRIAQYLKNLEVLELGGCSNITNTGL-----LLIAWGLHRLKSLNL 176
Query: 218 RLFCLHVFXXXXXXXXXXXXEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSK 276
R C HV CL SL YL L CQ L+D + SK
Sbjct: 177 RS-CRHVSDVGIGHLAGMTRSAAE---GCL-------SLEYLTLQDCQKLTDLSLKHISK 225
Query: 277 -IGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLE 332
+ LKVLNL F I+D ++HL +T+L SLNL SC I D G+++L G L L+
Sbjct: 226 GLTKLKVLNLSFCGGISDAGMIHLSHMTSLWSLNLRSCDNISDTGIMHLAMGTLRLSGLD 285
Query: 333 LSDT-QVGSSGLRHLS-GLTNLESINLSFTGISDGSLRKLAG-LSSLKSLNLD--ARQIX 387
+S ++G L +++ GL L+S++L ISD + ++ + L++LN+ R
Sbjct: 286 VSFCDKIGDQSLAYIAQGLYQLKSLSLCSCHISDDGINRMVRQMHELRTLNIGQCVRITD 345
Query: 388 XXXXXXXXXXXXXXXXDLFGA-RITDSGAAYLRNFKNLRSLEICGGGL 434
DL+G +IT G L L L++ GL
Sbjct: 346 KGLELIADHLTQLTGIDLYGCTKITKRG---LERITQLPCLKVLNLGL 390
|
|
| ZFIN|ZDB-GENE-030131-5920 fbxl14a "F-box and leucine-rich repeat protein 14a" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 237 (88.5 bits), Expect = 2.2e-17, P = 2.2e-17
Identities = 103/348 (29%), Positives = 161/348 (46%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVN--LKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + GL + ++ + L
Sbjct: 68 RGIKKVQILSLRRSLSYVIQGMP------NIESLNLSGCYNLTDNGLGHAFVQDIPSLRI 121
Query: 160 LNIKWCNCITDSDMKPLSG-LTNLKSLQIS-CSKVTDSGIAYLKGLSISSVIFILCSMII 217
LN+ C ITDS + ++ L NL+ L + CS +T++G+ L I+ + L S+ +
Sbjct: 122 LNLSLCKQITDSSLGRIAQYLKNLELLDLGGCSNITNTGL-----LLIAWGLHNLKSLNL 176
Query: 218 RLFCLHVFXXXXXXXXXXXXEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSK 276
R C HV CL +L +L L CQ L+D + SK
Sbjct: 177 RS-CRHVSDVGIGHLAGMTRSAAE---GCL-------TLEHLTLQDCQKLTDLSLKHISK 225
Query: 277 -IGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLE 332
+ LKVLNL F I+D ++HL +T L +LNL SC I D G+++L+ G L L+
Sbjct: 226 GLNKLKVLNLSFCGGISDAGMIHLSHMTQLWTLNLRSCDNISDTGIMHLSMGALRLYGLD 285
Query: 333 LSDT-QVGSSGLRHLS-GLTNLESINLSFTGISDGSLRKLAG-LSSLKSLNLD--ARQIX 387
+S +VG L +++ GL L+S++L ISD + ++ + LK+LN+ R
Sbjct: 286 VSFCDKVGDQSLAYIAQGLYQLKSLSLCSCHISDDGINRMVRQMHELKTLNIGQCVRITD 345
Query: 388 XXXXXXXXXXXXXXXXDLFGA-RITDSGAAYLRNFKNLRSLEICGGGL 434
DL+G +IT G L L L++ GL
Sbjct: 346 KGLELIADHLTQLTGIDLYGCTKITKRG---LERITQLPCLKVLNLGL 390
|
|
| TAIR|locus:2138131 AT4G23840 "AT4G23840" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 234 (87.4 bits), Expect = 1.5e-16, P = 1.5e-16
Identities = 102/460 (22%), Positives = 195/460 (42%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQXXXXXX 61
LP ++ + L+ R L LE F+ +++++ L VN +WM I
Sbjct: 33 LPPHLADALLRRLLKKRLLFPSLLEGFK-YSVENIDLRGKSSVNAEWMAYIGGFVNLITL 91
Query: 62 XXXXXXXXXXXXXIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
+ ++L LD + C +++D G++HL+ + NL L + +T
Sbjct: 92 NLSDCQRINSSTLWPITGLTSLTELDLSRCFKVTDAGMKHLQSVVNLKKLWISQTG-VTE 150
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
G+ A L L LDL L++L+ L KLE L+I W + +T+ + +N
Sbjct: 151 VGISLLASLKKLSLLDLGGLPVTDQNLISLQALTKLEYLDI-WGSNVTNQGAVSILKFSN 209
Query: 182 LKSLQISCSKVTDS-GIAYLKGLSISSVIFIL-------CSMIIRLFCLHVFXXXXXXXX 233
L L +S + +T + I +L+ L +++ + + + +L
Sbjct: 210 LSFLNLSWTSITQTPNIPHLECLHMNTCTIVSEPKTHSSLASLKKLVLSGANFSAETESL 269
Query: 234 XXXXEGC----PVTAACLDSLSALGSLF---YLNLNRCQLSDDGCEKFSKIG-SLKVLNL 285
+ C V+ L + S L ++F +L+L+ DD + +G +LK LN+
Sbjct: 270 SFTNKSCITYLDVSKTSLKNFSFLETMFNLEHLDLSSTAFGDDSVGFVACVGENLKNLNV 329
Query: 286 GFNEITDECLVHLKG-LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS-GL 343
+IT + +L G + LE+L++ + D ++ ++ + C++ D + S+ G
Sbjct: 330 SDTQITPSGVGNLAGHVPQLETLSMSQTFVDDLSILLIS--TTMPCIKALDLGMNSTLGF 387
Query: 344 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIXXXXXXXXXXXXXXXXX 403
+L ++ E + SL L L+SL++L+L+ +
Sbjct: 388 YYL--ISPQEE--------KEKSLAALQSLTSLETLSLEHPYLGDKALSGLSSLTGLTHL 437
Query: 404 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 443
L +TDS +L + NL SL + G LT G++ +
Sbjct: 438 SLTSTSLTDSTLHHLSSLPNLVSLGVRDGVLTSNGLEKFR 477
|
|
| UNIPROTKB|F1NMM1 FBXL14 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 222 (83.2 bits), Expect = 4.8e-16, P = 4.8e-16
Identities = 103/350 (29%), Positives = 160/350 (45%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVN--LKGLMKLES 159
RG+ + LS RR+ + QGM ++ L+L C + GL + + + L S
Sbjct: 1 RGIRRVQILSLRRSLSYVIQGMA------DIESLNLSGCYNLTDNGLGHAFVAEISSLRS 54
Query: 160 LNIKWCNCITDSDMKPLSG-LTNLKSLQIS-CSKVTDSGIAYLK-GLS-ISSVIFILCSM 215
LN+ C ITDS + ++ L L+ L++ CS +T++G+ + GL + S+ C
Sbjct: 55 LNLSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRH 114
Query: 216 IIRLFCLHVFXXXXXXXXXXXXEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKF 274
+ + H+ EGC LG L L L CQ LSD +
Sbjct: 115 LSDVGIGHL-----AGMTRSAAEGC------------LG-LEQLTLQDCQKLSDLSIKHL 156
Query: 275 SK-IGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKC 330
++ +G L+ LNL F I+D L+HL +++L SLNL SC I D G+++L G L
Sbjct: 157 ARGLGRLRQLNLSFCGGISDAGLLHLSHMSSLRSLNLRSCDNISDTGIMHLAMGSLRLSG 216
Query: 331 LELSDT-QVGSSGLRHLS-GLTNLESINLSFTGISD-GSLRKLAGLSSLKSLNLD--ARQ 385
L++S +VG L +++ GL L S++L ISD G R + + L++LN+ R
Sbjct: 217 LDVSFCDKVGDQSLAYIAQGLDGLRSLSLCSCHISDEGINRMVRQMHGLRTLNIGQCVRI 276
Query: 386 IXXXXXXXXXXXXXXXXXDLFGA-RITDSGAAYLRNFKNLRSLEICGGGL 434
DL+G RIT G L L L++ GL
Sbjct: 277 TDKGLELIAEHLSQLTGIDLYGCTRITKRG---LERITQLPCLKVLNLGL 323
|
|
| UNIPROTKB|Q17R01 FBXL14 "F-box/LRR-repeat protein 14" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 220 (82.5 bits), Expect = 1.8e-15, P = 1.8e-15
Identities = 89/326 (27%), Positives = 160/326 (49%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ + +L +L+ IT + A + L
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145
Query: 134 VKLDLERCTRI-HGGLVNLK-GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191
L+L C+ I + GL+ + GL +L+SLN++ C ++D + L+G+T S ++
Sbjct: 146 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTR------SAAE 199
Query: 192 VTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFXXXXXXXXXXXXEGCPVTAACLDSLS 251
G L+ L++ C + L H+ ++ A L LS
Sbjct: 200 ----GCLGLEQLTLQD-----CQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLS 250
Query: 252 ALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLES 306
+GSL LNL C +SD G + +GSL++ L++ F +++ D+ L ++ +GL L+S
Sbjct: 251 HMGSLRSLNLRSCDNISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKS 309
Query: 307 LNLDSCGIGDEGLVNLTG-LCNLKCLELSD-TQVGSSGLR----HLSGLTNLESINLSFT 360
L+L SC I D+G+ + + L+ L + ++ GL HLS LT ++ T
Sbjct: 310 LSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGC--T 367
Query: 361 GISDGSLRKLAGLSSLKSLNLDARQI 386
I+ L ++ L LK LNL Q+
Sbjct: 368 RITKRGLERITQLPCLKVLNLGLWQM 393
|
|
| MGI|MGI:2141676 Fbxl14 "F-box and leucine-rich repeat protein 14" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 220 (82.5 bits), Expect = 1.8e-15, P = 1.8e-15
Identities = 89/326 (27%), Positives = 160/326 (49%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ + +L +L+ IT + A + L
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145
Query: 134 VKLDLERCTRI-HGGLVNLK-GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191
L+L C+ I + GL+ + GL +L+SLN++ C ++D + L+G+T S ++
Sbjct: 146 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTR------SAAE 199
Query: 192 VTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFXXXXXXXXXXXXEGCPVTAACLDSLS 251
G L+ L++ C + L H+ ++ A L LS
Sbjct: 200 ----GCLGLEQLTLQD-----CQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLS 250
Query: 252 ALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLES 306
+GSL LNL C +SD G + +GSL++ L++ F +++ D+ L ++ +GL L+S
Sbjct: 251 HMGSLRSLNLRSCDNISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKS 309
Query: 307 LNLDSCGIGDEGLVNLTG-LCNLKCLELSD-TQVGSSGLR----HLSGLTNLESINLSFT 360
L+L SC I D+G+ + + L+ L + ++ GL HLS LT ++ T
Sbjct: 310 LSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGC--T 367
Query: 361 GISDGSLRKLAGLSSLKSLNLDARQI 386
I+ L ++ L LK LNL Q+
Sbjct: 368 RITKRGLERITQLPCLKVLNLGLWQM 393
|
|
| RGD|1305523 Fbxl14 "F-box and leucine-rich repeat protein 14" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 220 (82.5 bits), Expect = 1.8e-15, P = 1.8e-15
Identities = 89/326 (27%), Positives = 160/326 (49%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ + +L +L+ IT + A + L
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145
Query: 134 VKLDLERCTRI-HGGLVNLK-GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191
L+L C+ I + GL+ + GL +L+SLN++ C ++D + L+G+T S ++
Sbjct: 146 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTR------SAAE 199
Query: 192 VTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFXXXXXXXXXXXXEGCPVTAACLDSLS 251
G L+ L++ C + L H+ ++ A L LS
Sbjct: 200 ----GCLGLEQLTLQD-----CQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLS 250
Query: 252 ALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLES 306
+GSL LNL C +SD G + +GSL++ L++ F +++ D+ L ++ +GL L+S
Sbjct: 251 HMGSLRSLNLRSCDNISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKS 309
Query: 307 LNLDSCGIGDEGLVNLTG-LCNLKCLELSD-TQVGSSGLR----HLSGLTNLESINLSFT 360
L+L SC I D+G+ + + L+ L + ++ GL HLS LT ++ T
Sbjct: 310 LSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGC--T 367
Query: 361 GISDGSLRKLAGLSSLKSLNLDARQI 386
I+ L ++ L LK LNL Q+
Sbjct: 368 RITKRGLERITQLPCLKVLNLGLWQM 393
|
|
| UNIPROTKB|Q8N1E6 FBXL14 "F-box/LRR-repeat protein 14" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 220 (82.5 bits), Expect = 2.1e-15, P = 2.1e-15
Identities = 89/326 (27%), Positives = 160/326 (49%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ + +L +L+ IT + A + L
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145
Query: 134 VKLDLERCTRI-HGGLVNLK-GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191
L+L C+ I + GL+ + GL +L+SLN++ C ++D + L+G+T S ++
Sbjct: 146 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTR------SAAE 199
Query: 192 VTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFXXXXXXXXXXXXEGCPVTAACLDSLS 251
G L+ L++ C + L H+ ++ A L LS
Sbjct: 200 ----GCLGLEQLTLQD-----CQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLS 250
Query: 252 ALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLES 306
+GSL LNL C +SD G + +GSL++ L++ F +++ D+ L ++ +GL L+S
Sbjct: 251 HMGSLRSLNLRSCDNISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKS 309
Query: 307 LNLDSCGIGDEGLVNLTG-LCNLKCLELSD-TQVGSSGLR----HLSGLTNLESINLSFT 360
L+L SC I D+G+ + + L+ L + ++ GL HLS LT ++ T
Sbjct: 310 LSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGC--T 367
Query: 361 GISDGSLRKLAGLSSLKSLNLDARQI 386
I+ L ++ L LK LNL Q+
Sbjct: 368 RITKRGLERITQLPCLKVLNLGLWQM 393
|
|
| DICTYBASE|DDB_G0291424 DDB_G0291424 "Transcription factor SKN7" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 213 (80.0 bits), Expect = 6.4e-14, P = 6.4e-14
Identities = 77/279 (27%), Positives = 132/279 (47%)
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLE-RCTRIHGGLVNL-KGLMK--LESLNIKWCNCI 168
F+R ++ + + F L +L+L + I+ +N+ KGLMK L S+NI N +
Sbjct: 393 FQRRKILSLKTLSLFRNC-KLSRLELYGKEIAINDEWLNITKGLMKSTLSSINISKNNSL 451
Query: 169 TDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLSIS-SVIFILCSMIIRLFCLHVFX 226
TD + LS L L SL IS C K+ +G+ L + + + + + L +
Sbjct: 452 TDQGIASLSSLAKLSSLDISYCEKIDGTGLEPLVDAGVPLQKLHMEGNSSLNLVKVFNSL 511
Query: 227 XXXXXXXXXXXEGCPVTAACLDSLSALGSLFYLNLNR-CQLSDDGCEKFSKIGSLKVLNL 285
+T LS L +L +L++ R QL + G E SK +L L++
Sbjct: 512 SKLKTLNSLCVGNTNITDDMCKPLSLLTTLTHLDVARNTQLGNQGLESISKCVNLIDLDI 571
Query: 286 GF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 344
+I + HL L+NL+SL+ ++C I DE + + L +L L L + +G +
Sbjct: 572 SCCTKINALGIRHLGSLSNLQSLSAENCAIDDESMKYIGTLKSLSSLSLINNPFSDTGAK 631
Query: 345 HLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD 382
++ LT L +++LS I+D +L L+ + LNL+
Sbjct: 632 NIGNLTLLTTLDLSMCANITDAALVHFKNLTQISKLNLN 670
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 529 | |||
| cd00116 | 319 | cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo | 4e-11 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 1e-06 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 1e-06 | |
| cd09293 | 226 | cd09293, AMN1, Antagonist of mitotic exit network | 8e-06 | |
| cd00116 | 319 | cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo | 1e-05 | |
| cd09293 | 226 | cd09293, AMN1, Antagonist of mitotic exit network | 3e-05 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 2e-04 | |
| cd00116 | 319 | cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo | 9e-04 | |
| cd00116 | 319 | cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo | 9e-04 | |
| cd09293 | 226 | cd09293, AMN1, Antagonist of mitotic exit network | 0.002 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 0.004 |
| >gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 4e-11
Identities = 74/260 (28%), Positives = 103/260 (39%), Gaps = 34/260 (13%)
Query: 232 LTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLSDDGC---EKFSKIGSLKVLNLGF 287
L+L P + L L+ L L+L+ L DGC E + SL+ L L
Sbjct: 58 LSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNN 117
Query: 288 NEITDECLVHL-KGLT----NLESLNLDSCGIGDEGLVNLTGL----CNLKCLELSDTQV 338
N + D L L KGL LE L L + L +LK L L++ +
Sbjct: 118 NGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGI 177
Query: 339 GSSGLRHL----SGLTNLESINLSFTGISDGSLRKLAG----LSSLKSLNLDARQITDTG 390
G +G+R L NLE ++L+ G++D LA L SL+ LNL +TD G
Sbjct: 178 GDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAG 237
Query: 391 LAALTS-----LTGLTHLDLFGARITDSGA----AYLRNFKNLRSLEICGGGLTDAGVKH 441
AAL S L L L ITD GA L ++L L++ G + G
Sbjct: 238 AAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEG--- 294
Query: 442 IKDLSSLTLLNLSQNCNLTD 461
L + +LL
Sbjct: 295 -AQLLAESLLEPGNELESLW 313
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 1e-06
Identities = 62/254 (24%), Positives = 121/254 (47%), Gaps = 3/254 (1%)
Query: 255 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 314
SL YLNL+ + G I +L+ L+L N ++ E + ++L+ L+L +
Sbjct: 119 SLRYLNLSNNNFT--GSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVL 176
Query: 315 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 374
+ +LT L +L+ L L+ Q+ R L + +L+ I L + +S ++ GL+
Sbjct: 177 VGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLT 236
Query: 375 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 434
SL L+L +T ++L +L L +L L+ +++ + + + L SL++ L
Sbjct: 237 SLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSL 296
Query: 435 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 494
+ + + L +L +L+L N N T K ++ L L L + +++ + ++L
Sbjct: 297 SGEIPELVIQLQNLEILHLFSN-NFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKH 355
Query: 495 KNLRSLTLESCKVT 508
NL L L + +T
Sbjct: 356 NNLTVLDLSTNNLT 369
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 1e-06
Identities = 58/208 (27%), Positives = 93/208 (44%)
Query: 228 SLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 287
S L +L+L G + +SL+ L SL +L L QL + ++ SLK + LG+
Sbjct: 162 SFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGY 221
Query: 288 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 347
N ++ E + GLT+L L+L + +L L NL+ L L ++ +
Sbjct: 222 NNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIF 281
Query: 348 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 407
L L S++LS +S + L +L+ L+L + T ALTSL L L L+
Sbjct: 282 SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWS 341
Query: 408 ARITDSGAAYLRNFKNLRSLEICGGGLT 435
+ + L NL L++ LT
Sbjct: 342 NKFSGEIPKNLGKHNNLTVLDLSTNNLT 369
|
Length = 968 |
| >gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1 | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 8e-06
Identities = 52/163 (31%), Positives = 77/163 (47%), Gaps = 11/163 (6%)
Query: 327 NLKCLELSDTQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLA-GLSSLKSLNLDA- 383
L+ LEL + L LS L+ + L I D L LA +L+ L+L A
Sbjct: 29 GLEWLELYMCPISDPPLDQLSNCNKLKKLILPGSKLIDDEGLIALAQSCPNLQVLDLRAC 88
Query: 384 RQITDTGLAAL-TSLTGLTHLDL----FGARITDSGAAYL-RNFKNLRSLEICGGGLTDA 437
ITD+G+ AL T+ L ++L G ITD + L +N L+++ G +TD
Sbjct: 89 ENITDSGIVALATNCPKLQTINLGRHRNGHLITDVSLSALGKNCTFLQTVGFAGCDVTDK 148
Query: 438 GVKHIKDLSSLTLLNLSQN-C-NLTDKTLELISGLTGLVSLNV 478
GV + S +L LS N C NLTD+++ I +L+V
Sbjct: 149 GVWELASGCSKSLERLSLNNCRNLTDQSIPAILASNYFPNLSV 191
|
Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226 |
| >gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 1e-05
Identities = 69/254 (27%), Positives = 106/254 (41%), Gaps = 36/254 (14%)
Query: 297 HLKGLTNLESLNLDSCGIGDEGLV----NLTGLCNLKCLELSDTQVGS---------SGL 343
L L L+ L L+ +G+E L +LK L LS + G GL
Sbjct: 18 LLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGL 77
Query: 344 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA----ALTSLT- 398
GL L+ + + G L L SSL+ L L+ + D GL L L
Sbjct: 78 TKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPP 137
Query: 399 GLTHLDLFGARITDSG----AAYLRNFKNLRSLEICGGGLTDAGVKHI----KDLSSLTL 450
L L L R+ + A LR ++L+ L + G+ DAG++ + K +L +
Sbjct: 138 ALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEV 197
Query: 451 LNLSQNCNLTDKTL----ELISGLTGLVSLNVSNSRITSAGLRHL-----KPLKNLRSLT 501
L+L N LTD+ E ++ L L LN+ ++ +T AG L P +L +L+
Sbjct: 198 LDL-NNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLS 256
Query: 502 LESCKVTANDIKRL 515
L +T + K L
Sbjct: 257 LSCNDITDDGAKDL 270
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319 |
| >gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1 | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 3e-05
Identities = 50/193 (25%), Positives = 79/193 (40%), Gaps = 38/193 (19%)
Query: 235 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 294
L L CP++ LD LS L L L +L I DE
Sbjct: 33 LELYMCPISDPPLDQLSNCNKLKKLILPGSKL-----------------------IDDEG 69
Query: 295 LVHL-KGLTNLESLNLDSC-GIGDEGLVNLTGLC-NLKCLELSDTQVGSS----GLRHLS 347
L+ L + NL+ L+L +C I D G+V L C L+ + L + G L L
Sbjct: 70 LIALAQSCPNLQVLDLRACENITDSGIVALATNCPKLQTINLGRHRNGHLITDVSLSALG 129
Query: 348 GL-TNLESINLSFTGISDGSLRKLAGLSS--LKSLNLD-ARQITDTGLAALTSLTGLTHL 403
T L+++ + ++D + +LA S L+ L+L+ R +TD + A+ + +L
Sbjct: 130 KNCTFLQTVGFAGCDVTDKGVWELASGCSKSLERLSLNNCRNLTDQSIPAILASNYFPNL 189
Query: 404 DLF----GARITD 412
+ ITD
Sbjct: 190 SVLEFRGCPLITD 202
|
Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 2e-04
Identities = 83/364 (22%), Positives = 145/364 (39%), Gaps = 27/364 (7%)
Query: 129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
GL +L LDL +L L L+ L + + N ++ + L L SL +S
Sbjct: 234 GLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFL-YQNKLSGPIPPSIFSLQKLISLDLS 292
Query: 189 CSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVF-----------LTSLQKLTLLNL 237
+ S+S I L + L LH+F LTSL +L +L L
Sbjct: 293 DN-------------SLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQL 339
Query: 238 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 297
+ +L +L L+L+ L+ + E G+L L L N + E
Sbjct: 340 WSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKS 399
Query: 298 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 357
L +L + L E T L + L++S+ + + +L+ ++L
Sbjct: 400 LGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSL 459
Query: 358 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 417
+ G L G L++L+L Q + L SL+ L L L +++
Sbjct: 460 ARNKFF-GGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDE 518
Query: 418 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 477
L + K L SL++ L+ ++ L+ L+LSQN L+ + + + + LV +N
Sbjct: 519 LSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQN-QLSGEIPKNLGNVESLVQVN 577
Query: 478 VSNS 481
+S++
Sbjct: 578 ISHN 581
|
Length = 968 |
| >gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 9e-04
Identities = 52/207 (25%), Positives = 78/207 (37%), Gaps = 31/207 (14%)
Query: 328 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR----KLAGLSSLKSLNLDA 383
LK L + L L L+ + L + + + + L SLK L L
Sbjct: 5 LKGELLKTERAT----ELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSL 60
Query: 384 RQ------ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC---GGGL 434
+ + L LT GL LDL + G L + SL+ GL
Sbjct: 61 NETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGL 120
Query: 435 TDAGVKHI----KDLS-SLTLLNLSQNCNLTDKTLELISGL----TGLVSLNVSNSRITS 485
D G++ + KDL +L L L +N L + E ++ L LN++N+ I
Sbjct: 121 GDRGLRLLAKGLKDLPPALEKLVLGRN-RLEGASCEALAKALRANRDLKELNLANNGIGD 179
Query: 486 AGLRHLKP----LKNLRSLTLESCKVT 508
AG+R L NL L L + +T
Sbjct: 180 AGIRALAEGLKANCNLEVLDLNNNGLT 206
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319 |
| >gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 9e-04
Identities = 34/108 (31%), Positives = 50/108 (46%), Gaps = 10/108 (9%)
Query: 225 FLTSLQKLTL-LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG----CEKFSKIGS 279
L++L L N G A + L A +L L+LN L+D+G E + + S
Sbjct: 163 ANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKS 222
Query: 280 LKVLNLGFNEITDECLVHL-----KGLTNLESLNLDSCGIGDEGLVNL 322
L+VLNLG N +TD L +L +L+L I D+G +L
Sbjct: 223 LEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDL 270
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319 |
| >gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1 | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.002
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 5/83 (6%)
Query: 43 GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGLE 100
+ D + + + L +V +G DVTD G+ L +L+ L N C ++D +
Sbjct: 119 LITDVSLSALGKNCTFLQTVGFAGCDVTDKGVWELASGCSKSLERLSLNNCRNLTDQSIP 178
Query: 101 HLRGLS---NLTSLSFRRNNAIT 120
+ + NL+ L FR IT
Sbjct: 179 AILASNYFPNLSVLEFRGCPLIT 201
|
Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 35.6 bits (83), Expect = 0.004
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 423 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 482
NL+SL++ LT K L +L +L+LS N NLT + E SGL L SL++S +
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGN-NLTSISPEAFSGLPSLRSLDLSGNN 59
Query: 483 I 483
+
Sbjct: 60 L 60
|
Length = 60 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 529 | |||
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 100.0 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 100.0 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.95 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.94 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.93 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.92 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.92 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.92 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.88 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.82 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.81 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.8 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.79 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.73 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.62 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.62 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 99.57 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.52 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 99.51 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 99.48 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.46 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 99.3 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 99.29 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.27 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 99.17 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.16 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.14 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.11 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 99.08 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 99.06 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 99.03 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.98 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 98.98 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.87 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 98.87 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.7 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.67 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.59 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 98.55 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 98.51 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.49 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 98.47 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 98.47 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.42 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 98.41 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 98.38 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 98.37 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.37 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.31 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.28 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.21 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 98.2 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 98.04 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 98.0 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 97.83 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 97.77 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 97.77 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.69 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.66 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 97.66 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.65 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 97.52 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 97.51 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.5 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 97.48 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 97.46 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 97.23 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 96.88 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.83 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.82 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 96.41 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 96.37 | |
| PF13516 | 24 | LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI | 93.77 | |
| smart00367 | 26 | LRR_CC Leucine-rich repeat - CC (cysteine-containi | 92.35 | |
| smart00367 | 26 | LRR_CC Leucine-rich repeat - CC (cysteine-containi | 91.9 | |
| PF13516 | 24 | LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI | 91.84 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 91.38 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 89.78 | |
| smart00368 | 28 | LRR_RI Leucine rich repeat, ribonuclease inhibitor | 89.28 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 84.37 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 84.37 | |
| KOG3763 | 585 | consensus mRNA export factor TAP/MEX67 [RNA proces | 83.96 |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-43 Score=384.82 Aligned_cols=462 Identities=19% Similarity=0.201 Sum_probs=251.6
Q ss_pred hcCCceeEEEecCcccCchhhhhc-cCCCCCCeEeccCCcccCchhhhhccCCCCCCEEEcCCCCccchhHHHHHhCCCC
Q 009672 54 SQGSSLLSVDLSGSDVTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLIN 132 (529)
Q Consensus 54 ~~~~~l~~l~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 132 (529)
...++|++|+|++|.+++..+..+ ..+++|++|++++|. +....+ .+.+++|++|++++|. ++...|..++++++
T Consensus 90 ~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~-l~~~~p--~~~l~~L~~L~Ls~n~-~~~~~p~~~~~l~~ 165 (968)
T PLN00113 90 FRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNN-FTGSIP--RGSIPNLETLDLSNNM-LSGEIPNDIGSFSS 165 (968)
T ss_pred hCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCc-cccccC--ccccCCCCEEECcCCc-ccccCChHHhcCCC
Confidence 346777777777777765555443 466677777776663 332211 1345566666666655 34445555666666
Q ss_pred CCEEeccCccccccccccccCCCcCcEEeccCCcccCccccccccCCCCCCeEEccCCCCChhHHHHhhccC-ccchhhh
Q 009672 133 LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLS-ISSVIFI 211 (529)
Q Consensus 133 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~~~~~~~ 211 (529)
|++|++++|......+..+.++++|++|++++| .+....+..++++++|+.|++++|.++...+..+..+. +..+.+.
T Consensus 166 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 244 (968)
T PLN00113 166 LKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASN-QLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLV 244 (968)
T ss_pred CCEEECccCcccccCChhhhhCcCCCeeeccCC-CCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECc
Confidence 666666655433344445555566666666553 23333445555555666666655555443333332221 1111111
Q ss_pred hhhhHHHhhhhhhhhcccCCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCC
Q 009672 212 LCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 291 (529)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 291 (529)
.... ....+..+.++++|+.|++++|.+.+..+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.
T Consensus 245 ~n~l---~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~ 321 (968)
T PLN00113 245 YNNL---TGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFT 321 (968)
T ss_pred Ccee---ccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccC
Confidence 0000 0112333444455555555555544444444445555555555555554444444444555555555555554
Q ss_pred hHHHHhhcCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccCh------------------------hhhhhcc
Q 009672 292 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS------------------------SGLRHLS 347 (529)
Q Consensus 292 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~------------------------~~~~~~~ 347 (529)
+..+..+..+++|+.|++.+|.+....+..++.+++|+.|++++|.+.. ..+..+.
T Consensus 322 ~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~ 401 (968)
T PLN00113 322 GKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLG 401 (968)
T ss_pred CcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHh
Confidence 4444444455555555555554443344444444555555555544443 3333344
Q ss_pred CCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEE
Q 009672 348 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 427 (529)
Q Consensus 348 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L 427 (529)
.+++|+.|++++|.+....+..+..++.|+.+++++|.+.+..+..+..+++|+.|++++|.+.+..+..+ ..++|+.|
T Consensus 402 ~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L 480 (968)
T PLN00113 402 ACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENL 480 (968)
T ss_pred CCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEE
Confidence 44455555555554444344444445555555555555544433334445555555555555544333322 33566677
Q ss_pred EccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccChhHHHhccCCCCCcEEeecCccC
Q 009672 428 EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 507 (529)
Q Consensus 428 ~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 507 (529)
++++|.+.+..+..+.++++|+.|++++| .+....|..+..+++|+.|++++|.+++..+..+..+++|++|++++|++
T Consensus 481 ~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 559 (968)
T PLN00113 481 DLSRNQFSGAVPRKLGSLSELMQLKLSEN-KLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQL 559 (968)
T ss_pred ECcCCccCCccChhhhhhhccCEEECcCC-cceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcc
Confidence 77777776666666777778888888888 67777777777888888888888888877777777888888888888887
Q ss_pred ChhHHHHhhcCCCCCceecC
Q 009672 508 TANDIKRLQSRDLPNLVSFR 527 (529)
Q Consensus 508 ~~~~~~~l~~~~~~~l~~l~ 527 (529)
+......+. .++.|+.++
T Consensus 560 ~~~~p~~l~--~l~~L~~l~ 577 (968)
T PLN00113 560 SGEIPKNLG--NVESLVQVN 577 (968)
T ss_pred cccCChhHh--cCcccCEEe
Confidence 755444444 455666554
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-43 Score=384.60 Aligned_cols=445 Identities=20% Similarity=0.176 Sum_probs=316.9
Q ss_pred CceeEEEecCcccCchhhhhccCCCCCCeEeccCCcccCchhhhhccCCCCCCEEEcCCCCccchhHHHHHhCCCCCCEE
Q 009672 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136 (529)
Q Consensus 57 ~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 136 (529)
++|++|+|++|.+++..+..++.+++|++|++++| .+....+..++++++|++|++++|. ++...|..+.++++|++|
T Consensus 140 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L 217 (968)
T PLN00113 140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGN-VLVGKIPNSLTNLTSLEFLTLASNQ-LVGQIPRELGQMKSLKWI 217 (968)
T ss_pred CCCCEEECcCCcccccCChHHhcCCCCCEEECccC-cccccCChhhhhCcCCCeeeccCCC-CcCcCChHHcCcCCccEE
Confidence 44444555554444444444555555555555554 3333334445555555555555554 334445555555555555
Q ss_pred eccCccccccccccccCCCcCcEEeccCCcccCccccccccCCCCCCeEEccCCCCChhHHHHhhccC-ccchhhhhhhh
Q 009672 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLS-ISSVIFILCSM 215 (529)
Q Consensus 137 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~~~~~~~~~~~ 215 (529)
++++|......+..++.+++|++|++++| .+.+..+..+.++++|+.|++++|.+++..+..+..+. +..+.+....
T Consensus 218 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~- 295 (968)
T PLN00113 218 YLGYNNLSGEIPYEIGGLTSLNHLDLVYN-NLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNS- 295 (968)
T ss_pred ECcCCccCCcCChhHhcCCCCCEEECcCc-eeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCe-
Confidence 55555433334444555555555555553 23334445555555666666655555443333332220 1111111110
Q ss_pred HHHhhhhhhhhcccCCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHH
Q 009672 216 IIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 295 (529)
Q Consensus 216 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 295 (529)
....++..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+
T Consensus 296 --l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p 373 (968)
T PLN00113 296 --LSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIP 373 (968)
T ss_pred --eccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCC
Confidence 011244556667777777777777766666677777788888888777776666677777788888888877776666
Q ss_pred HhhcCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCC
Q 009672 296 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 375 (529)
Q Consensus 296 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 375 (529)
..+..+++|+.|++.+|.+....+..+..+++|+.|++++|.++...+..+..+++|+.+++++|.+....+..+..+++
T Consensus 374 ~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 453 (968)
T PLN00113 374 EGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPS 453 (968)
T ss_pred hhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCC
Confidence 67777788888888888777667777888999999999999988777778889999999999999998877777778999
Q ss_pred CcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCC
Q 009672 376 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 455 (529)
Q Consensus 376 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~ 455 (529)
|+.|++++|.+....+..+ ..++|+.|++++|++.+..+..+.++++|+.|++++|.+.+..+..+.++++|++|++++
T Consensus 454 L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 532 (968)
T PLN00113 454 LQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSH 532 (968)
T ss_pred CcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCC
Confidence 9999999999876544443 457999999999999988888889999999999999999988888899999999999999
Q ss_pred CCCCChhHHHHHhCCCCCCeeeccCCccChhHHHhccCCCCCcEEeecCccCCh
Q 009672 456 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 509 (529)
Q Consensus 456 ~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 509 (529)
| .++...|..+..+++|+.|++++|++.+..+..+..+++|+.+++++|+++.
T Consensus 533 N-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~ 585 (968)
T PLN00113 533 N-QLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG 585 (968)
T ss_pred C-cccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCccee
Confidence 9 8888899999999999999999999998888889999999999999998764
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-37 Score=282.76 Aligned_cols=392 Identities=23% Similarity=0.246 Sum_probs=308.0
Q ss_pred CceeEEEecCcccCchhhhhc-cCC-CCCCeEeccCCcccCchhhhhccCCCCCCEEEcCCCCccchhHHHHHhCCCCCC
Q 009672 57 SSLLSVDLSGSDVTDSGLIHL-KDC-SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134 (529)
Q Consensus 57 ~~l~~l~l~~~~~~~~~~~~l-~~~-~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 134 (529)
.+.+.++.++..+.......+ +-+ +.-++|++++| .+..+.+..|.++++|+.+++..|.. ..+|...+...+|+
T Consensus 52 c~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnN-kl~~id~~~f~nl~nLq~v~l~~N~L--t~IP~f~~~sghl~ 128 (873)
T KOG4194|consen 52 CNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNN-KLSHIDFEFFYNLPNLQEVNLNKNEL--TRIPRFGHESGHLE 128 (873)
T ss_pred CCceeeecCccccccccccccCCcCccceeeeecccc-ccccCcHHHHhcCCcceeeeeccchh--hhccccccccccee
Confidence 447788888888776555554 333 35778999987 78888888999999999999998874 45565555566699
Q ss_pred EEeccCccccccccccccCCCcCcEEeccCCcccCccccccccCCCCCCeEEccCCCCChhHHHHhhccCccchhhhhhh
Q 009672 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCS 214 (529)
Q Consensus 135 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~ 214 (529)
.|.+.+|.+.+...+.+..++.||.||++. +.++......+..-.++++|++++|+|++.....|..+
T Consensus 129 ~L~L~~N~I~sv~se~L~~l~alrslDLSr-N~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~l----------- 196 (873)
T KOG4194|consen 129 KLDLRHNLISSVTSEELSALPALRSLDLSR-NLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSL----------- 196 (873)
T ss_pred EEeeeccccccccHHHHHhHhhhhhhhhhh-chhhcccCCCCCCCCCceEEeecccccccccccccccc-----------
Confidence 999988866666667788888999999987 56666666677777788999999999988887777776
Q ss_pred hHHHhhhhhhhhcccCCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHH
Q 009672 215 MIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 294 (529)
Q Consensus 215 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 294 (529)
.+|..|.++.|.++......|+++++|+.|++..|.+....--.|..+++|+.+.+..|.+....
T Consensus 197 ---------------nsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~ 261 (873)
T KOG4194|consen 197 ---------------NSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLD 261 (873)
T ss_pred ---------------chheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCccccc
Confidence 78888899999888887788888899999999888876554456677888888888888776555
Q ss_pred HHhhcCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCC
Q 009672 295 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 374 (529)
Q Consensus 295 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 374 (529)
...|..+.++++|++..|.+......++.++++|+.|+++.|.+...-+..++-+++|+.|++++|.+.......|..+.
T Consensus 262 DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~ 341 (873)
T KOG4194|consen 262 DGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLS 341 (873)
T ss_pred CcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHH
Confidence 55678888888888888888776667777888888888888888777777777788888888888888887777788888
Q ss_pred CCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCCh---HHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeE
Q 009672 375 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD---SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 451 (529)
Q Consensus 375 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~---~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L 451 (529)
.|++|.++.|.++......|..+++|++|+++.|.+.. .....|..+++|+.|++.||++..+.-.+|.+++.|++|
T Consensus 342 ~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~L 421 (873)
T KOG4194|consen 342 QLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHL 421 (873)
T ss_pred HhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCccccee
Confidence 88888888888887766777777888888888886653 235566778888888888888888777788888888888
Q ss_pred ecCCCCCCChhHHHHHhCCCCCCeeeccC
Q 009672 452 NLSQNCNLTDKTLELISGLTGLVSLNVSN 480 (529)
Q Consensus 452 ~l~~~~~l~~~~~~~l~~l~~L~~L~l~~ 480 (529)
++.+| .+..+.+.+|..+ .|++|.+..
T Consensus 422 dL~~N-aiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 422 DLGDN-AIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred cCCCC-cceeecccccccc-hhhhhhhcc
Confidence 88888 6777777777777 777776653
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=280.48 Aligned_cols=397 Identities=23% Similarity=0.316 Sum_probs=344.4
Q ss_pred CCC-CCCeEeccCCcccCchhhhhccCC--CCCCEEEcCCCCccchhHHHHHhCCCCCCEEeccCccccccccccccCCC
Q 009672 79 DCS-NLQSLDFNFCIQISDGGLEHLRGL--SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLM 155 (529)
Q Consensus 79 ~~~-~L~~L~l~~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 155 (529)
.|+ +-+.|+.++. .+.......+... +.-+.|+++.|. ++...+..|.++++|+.+++.+| .+...|...+...
T Consensus 49 ~c~c~~~lldcs~~-~lea~~~~~l~g~lp~~t~~LdlsnNk-l~~id~~~f~nl~nLq~v~l~~N-~Lt~IP~f~~~sg 125 (873)
T KOG4194|consen 49 TCPCNTRLLDCSDR-ELEAIDKSRLKGFLPSQTQTLDLSNNK-LSHIDFEFFYNLPNLQEVNLNKN-ELTRIPRFGHESG 125 (873)
T ss_pred cCCCCceeeecCcc-ccccccccccCCcCccceeeeeccccc-cccCcHHHHhcCCcceeeeeccc-hhhhccccccccc
Confidence 344 4566777775 5665544444433 245669999997 78889999999999999999986 5666666666677
Q ss_pred cCcEEeccCCcccCccccccccCCCCCCeEEccCCCCChhHHHHhhccCccchhhhhhhhHHHhhhhhhhhcccCCccEE
Q 009672 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLL 235 (529)
Q Consensus 156 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 235 (529)
+|+.|++.+ +.++....+++..++.|+.||++.|.|+......++.- .++++|
T Consensus 126 hl~~L~L~~-N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~--------------------------~ni~~L 178 (873)
T KOG4194|consen 126 HLEKLDLRH-NLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAK--------------------------VNIKKL 178 (873)
T ss_pred ceeEEeeec-cccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCC--------------------------CCceEE
Confidence 899999998 77887788899999999999999999887666665544 799999
Q ss_pred EccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEECCCCCCC
Q 009672 236 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 315 (529)
Q Consensus 236 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 315 (529)
++++|+++......|..+.+|..|.++.|.++..++..|.++++|+.|++..|++...-...|.++++|+.|.+..|.+.
T Consensus 179 ~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~ 258 (873)
T KOG4194|consen 179 NLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDIS 258 (873)
T ss_pred eeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcc
Confidence 99999999887788899999999999999999988888989999999999999887544556889999999999999888
Q ss_pred hhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHh
Q 009672 316 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 395 (529)
Q Consensus 316 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~ 395 (529)
......|..+.+++.|++..|.+.......+-+++.|+.|+++.|.|..+.+..+..+++|++|+++.|.++...++.|.
T Consensus 259 kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~ 338 (873)
T KOG4194|consen 259 KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFR 338 (873)
T ss_pred cccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHH
Confidence 77777888899999999999999888777778899999999999999999999999999999999999999999899999
Q ss_pred cCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChh---hhhhccCCCCCCeEecCCCCCCChhHHHHHhCCCC
Q 009672 396 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA---GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 472 (529)
Q Consensus 396 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~---~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~ 472 (529)
.+..|++|.++.|.++......|..+++|++|+++.|.++.. ....|.++++|++|++.|| ++..+.-.+|.+++.
T Consensus 339 ~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~ 417 (873)
T KOG4194|consen 339 VLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIPKRAFSGLEA 417 (873)
T ss_pred HHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCc-eeeecchhhhccCcc
Confidence 999999999999999999888999999999999999987543 3456788999999999999 899988899999999
Q ss_pred CCeeeccCCccChhHHHhccCCCCCcEEeecCccC
Q 009672 473 LVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 507 (529)
Q Consensus 473 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 507 (529)
|+.|+|.+|.+-..-+++|..+ .|++|.+..-.|
T Consensus 418 LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssf 451 (873)
T KOG4194|consen 418 LEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSF 451 (873)
T ss_pred cceecCCCCcceeecccccccc-hhhhhhhcccce
Confidence 9999999999998889999887 899999876544
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.8e-31 Score=255.37 Aligned_cols=470 Identities=23% Similarity=0.223 Sum_probs=304.2
Q ss_pred hcccCChhhhhhhccCccceeccCCCCCCCHHHHHHHHhcCCceeEEEecCcccCchhhhhccCCCCCCeEeccCCcccC
Q 009672 16 YSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQIS 95 (529)
Q Consensus 16 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 95 (529)
.+..++.++...+.+..++++++...-.+... .++.... -+|++|++++|.+. ..+..+...++|++|+++.| .+.
T Consensus 6 s~~~l~~ip~~i~~~~~~~~ln~~~N~~l~~p-l~~~~~~-v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n-~i~ 81 (1081)
T KOG0618|consen 6 SDEQLELIPEQILNNEALQILNLRRNSLLSRP-LEFVEKR-VKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRN-YIR 81 (1081)
T ss_pred ccccCcccchhhccHHHHHhhhccccccccCc-hHHhhhe-eeeEEeeccccccc-cCCchhhhHHHHhhcccchh-hHh
Confidence 34556677777777766888887665544333 3444433 34999999999876 45555678889999999987 455
Q ss_pred chhhhhccCCCCCCEEEcCCCCccchhHHHHHhCCCCCCEEeccCccccccccccccCCCcCcEEeccCC----------
Q 009672 96 DGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC---------- 165 (529)
Q Consensus 96 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~---------- 165 (529)
.. +....++.+|++|.|..+.. ...|..+..+++|++|+++.|. +...+..+..+..++.+..+++
T Consensus 82 ~v-p~s~~~~~~l~~lnL~~n~l--~~lP~~~~~lknl~~LdlS~N~-f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ 157 (1081)
T KOG0618|consen 82 SV-PSSCSNMRNLQYLNLKNNRL--QSLPASISELKNLQYLDLSFNH-FGPIPLVIEVLTAEEELAASNNEKIQRLGQTS 157 (1081)
T ss_pred hC-chhhhhhhcchhheeccchh--hcCchhHHhhhcccccccchhc-cCCCchhHHhhhHHHHHhhhcchhhhhhcccc
Confidence 44 46778899999999999874 7789999999999999999874 4455555555555555555553
Q ss_pred --------cccCccccccccCCCCCCeEEccCCCCChhHHHHhhcc---CccchhhhhhhhHHHhhhhhhhhcccCCccE
Q 009672 166 --------NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL---SISSVIFILCSMIIRLFCLHVFLTSLQKLTL 234 (529)
Q Consensus 166 --------~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 234 (529)
+.+.+..+.++..+.+ .|+++.|.+.......+..+ ...+.++.. .--.-++++.
T Consensus 158 ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~------------l~~~g~~l~~ 223 (1081)
T KOG0618|consen 158 IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVLDLSNLANLEVLHCERNQLSE------------LEISGPSLTA 223 (1081)
T ss_pred chhhhhhhhhcccchhcchhhhhe--eeecccchhhhhhhhhccchhhhhhhhcccce------------EEecCcchhe
Confidence 1122222222333332 35555554442222221111 000000000 0011144445
Q ss_pred EEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEECCCCCC
Q 009672 235 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 314 (529)
Q Consensus 235 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 314 (529)
|..+.|.+.... ......+|++++++.+.+...+ +++..+.+|+.++..+|.+. ..+..+...++|+.|....|.+
T Consensus 224 L~a~~n~l~~~~--~~p~p~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel 299 (1081)
T KOG0618|consen 224 LYADHNPLTTLD--VHPVPLNLQYLDISHNNLSNLP-EWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNEL 299 (1081)
T ss_pred eeeccCcceeec--cccccccceeeecchhhhhcch-HHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhh
Confidence 555554444211 1112246666666666665543 66666666666666666664 3444555566666666666655
Q ss_pred ChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCC-CCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHH
Q 009672 315 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT-NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 393 (529)
Q Consensus 315 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 393 (529)
.. .+........|++|++..|.+.......+.... .++.+..+.+.+.......=..++.|+.|.+.+|.+++...+.
T Consensus 300 ~y-ip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~ 378 (1081)
T KOG0618|consen 300 EY-IPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPV 378 (1081)
T ss_pred hh-CCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhh
Confidence 43 233444566777777777766555444443333 2555555555544432111123467899999999999988888
Q ss_pred HhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhCCCCC
Q 009672 394 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 473 (529)
Q Consensus 394 l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L 473 (529)
+-+.++|+.|++++|++..++...+.++..|++|+++||.++.. +..+..++.|++|...+| .+... | .+.+++.|
T Consensus 379 l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~L-p~tva~~~~L~tL~ahsN-~l~~f-P-e~~~l~qL 454 (1081)
T KOG0618|consen 379 LVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTL-PDTVANLGRLHTLRAHSN-QLLSF-P-ELAQLPQL 454 (1081)
T ss_pred hccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhh-hHHHHhhhhhHHHhhcCC-ceeec-h-hhhhcCcc
Confidence 88999999999999999999999999999999999999999886 467888999999999998 56553 4 78889999
Q ss_pred CeeeccCCccChhHHHhccCCCCCcEEeecCccCChhHHHHhh
Q 009672 474 VSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 516 (529)
Q Consensus 474 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 516 (529)
+.+|++.|+++.........-++|++||++||.....+.+.++
T Consensus 455 ~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~ 497 (1081)
T KOG0618|consen 455 KVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLK 497 (1081)
T ss_pred eEEecccchhhhhhhhhhCCCcccceeeccCCcccccchhhhH
Confidence 9999999999876664433338999999999975554445554
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.2e-29 Score=232.06 Aligned_cols=350 Identities=21% Similarity=0.216 Sum_probs=235.8
Q ss_pred hhhccCCCCCCEEEcCCCCccchhHHHHHhCCCCCCEEeccCccccccccccccCCCcCcEEeccCCcccCccccccccC
Q 009672 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178 (529)
Q Consensus 99 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~ 178 (529)
+..+..++.++.|.|..... ...|+.++.+.+|++|.+.+| .+......+..++.||.+.+..++--....|..+..
T Consensus 25 P~~v~qMt~~~WLkLnrt~L--~~vPeEL~~lqkLEHLs~~HN-~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~ 101 (1255)
T KOG0444|consen 25 PHDVEQMTQMTWLKLNRTKL--EQVPEELSRLQKLEHLSMAHN-QLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFR 101 (1255)
T ss_pred chhHHHhhheeEEEechhhh--hhChHHHHHHhhhhhhhhhhh-hhHhhhhhhccchhhHHHhhhccccccCCCCchhcc
Confidence 44444555555555555442 345666666666666666665 233444556667777777777755444456677888
Q ss_pred CCCCCeEEccCCCCChhHHHHhhccCccchhhhhhhhHHHhhhhhhhhcccCCccEEEccCCCCCHHHHHHhhcCCCCCe
Q 009672 179 LTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFY 258 (529)
Q Consensus 179 ~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 258 (529)
+..|+.|+++.|.++. .+..++.- +++-.|++++|++..+....|.++..|-.
T Consensus 102 l~dLt~lDLShNqL~E-vP~~LE~A--------------------------Kn~iVLNLS~N~IetIPn~lfinLtDLLf 154 (1255)
T KOG0444|consen 102 LKDLTILDLSHNQLRE-VPTNLEYA--------------------------KNSIVLNLSYNNIETIPNSLFINLTDLLF 154 (1255)
T ss_pred cccceeeecchhhhhh-cchhhhhh--------------------------cCcEEEEcccCccccCCchHHHhhHhHhh
Confidence 8999999999888764 23333333 88889999999988877777788889999
Q ss_pred EecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEECCCCCCC-hhhhhhhcCCCCCCeEEcCCCc
Q 009672 259 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG-DEGLVNLTGLCNLKCLELSDTQ 337 (529)
Q Consensus 259 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~ 337 (529)
|++++|++... |..+..+.+|++|++++|++.......+.++++|+.|.+++.+-+ .-.+..+..+.+|..++++.|+
T Consensus 155 LDLS~NrLe~L-PPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~ 233 (1255)
T KOG0444|consen 155 LDLSNNRLEML-PPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN 233 (1255)
T ss_pred hccccchhhhc-CHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccC
Confidence 99999987654 445667888999999998876544555666777777777776332 2244556667777777777776
Q ss_pred cChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHH-HH
Q 009672 338 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG-AA 416 (529)
Q Consensus 338 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~-~~ 416 (529)
+... +..+-++++|+.|++++|.++.... ......+|++|+++.|.++.. |..+..++.|+.|...+|+++..+ |.
T Consensus 234 Lp~v-Pecly~l~~LrrLNLS~N~iteL~~-~~~~W~~lEtLNlSrNQLt~L-P~avcKL~kL~kLy~n~NkL~FeGiPS 310 (1255)
T KOG0444|consen 234 LPIV-PECLYKLRNLRRLNLSGNKITELNM-TEGEWENLETLNLSRNQLTVL-PDAVCKLTKLTKLYANNNKLTFEGIPS 310 (1255)
T ss_pred CCcc-hHHHhhhhhhheeccCcCceeeeec-cHHHHhhhhhhccccchhccc-hHHHhhhHHHHHHHhccCcccccCCcc
Confidence 6533 4445566777777777777665332 222335677777777777765 566667777777777777766533 55
Q ss_pred hhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccCh
Q 009672 417 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 485 (529)
Q Consensus 417 ~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~ 485 (529)
.++++.+|+++..++|.+.- .|..+..|+.|++|.++.| .+.. .|++++-++.|+.|++..|+-..
T Consensus 311 GIGKL~~Levf~aanN~LEl-VPEglcRC~kL~kL~L~~N-rLiT-LPeaIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 311 GIGKLIQLEVFHAANNKLEL-VPEGLCRCVKLQKLKLDHN-RLIT-LPEAIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred chhhhhhhHHHHhhcccccc-CchhhhhhHHHHHhccccc-ceee-chhhhhhcCCcceeeccCCcCcc
Confidence 66777777777777776653 3666666777777777777 3332 46777777777777777776443
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.9e-28 Score=228.38 Aligned_cols=366 Identities=22% Similarity=0.254 Sum_probs=297.8
Q ss_pred CCCCCEEEcCCCCccchhHHHHHhCCCCCCEEeccCccccccccccccCCCcCcEEeccCCcccCccccccccCCCCCCe
Q 009672 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184 (529)
Q Consensus 105 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 184 (529)
++-.+-.++++|.+-.+..|.....+++++.|.+.+. .+...|..++.+.+|++|.+.+++-++ ....++.++.||.
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt-~L~~vPeEL~~lqkLEHLs~~HN~L~~--vhGELs~Lp~LRs 82 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRT-KLEQVPEELSRLQKLEHLSMAHNQLIS--VHGELSDLPRLRS 82 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechh-hhhhChHHHHHHhhhhhhhhhhhhhHh--hhhhhccchhhHH
Confidence 3445667777777544678889999999999999884 677888999999999999999955433 4577889999999
Q ss_pred EEccCCCCChhHHHHhhccCccchhhhhhhhHHHhhhhhhhhcccCCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCC
Q 009672 185 LQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 264 (529)
Q Consensus 185 L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 264 (529)
+.++.|++...++ |..+-.+..|..|+++.|++.+ .|..+.+..++-.|++++|
T Consensus 83 v~~R~N~LKnsGi-------------------------P~diF~l~dLt~lDLShNqL~E-vP~~LE~AKn~iVLNLS~N 136 (1255)
T KOG0444|consen 83 VIVRDNNLKNSGI-------------------------PTDIFRLKDLTILDLSHNQLRE-VPTNLEYAKNSIVLNLSYN 136 (1255)
T ss_pred HhhhccccccCCC-------------------------Cchhcccccceeeecchhhhhh-cchhhhhhcCcEEEEcccC
Confidence 9999998765432 1122334899999999999987 4778888899999999999
Q ss_pred cCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccC-hhhh
Q 009672 265 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG-SSGL 343 (529)
Q Consensus 265 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~ 343 (529)
++...+-..+.++..|-.|++++|++.. .|..+..+..|++|.+++|.+.......+..+++|+.|++++..-+ ...+
T Consensus 137 ~IetIPn~lfinLtDLLfLDLS~NrLe~-LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~P 215 (1255)
T KOG0444|consen 137 NIETIPNSLFINLTDLLFLDLSNNRLEM-LPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIP 215 (1255)
T ss_pred ccccCCchHHHhhHhHhhhccccchhhh-cCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCC
Confidence 9987766666788899999999999874 4556778899999999999877655666666778888888876432 3345
Q ss_pred hhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCC
Q 009672 344 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 423 (529)
Q Consensus 344 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~ 423 (529)
..+..+.+|+.++++.|++.. .+.++-.+++|+.|++++|.++.... ..+...+|++|+++.|+++.. |.++.+++.
T Consensus 216 tsld~l~NL~dvDlS~N~Lp~-vPecly~l~~LrrLNLS~N~iteL~~-~~~~W~~lEtLNlSrNQLt~L-P~avcKL~k 292 (1255)
T KOG0444|consen 216 TSLDDLHNLRDVDLSENNLPI-VPECLYKLRNLRRLNLSGNKITELNM-TEGEWENLETLNLSRNQLTVL-PDAVCKLTK 292 (1255)
T ss_pred CchhhhhhhhhccccccCCCc-chHHHhhhhhhheeccCcCceeeeec-cHHHHhhhhhhccccchhccc-hHHHhhhHH
Confidence 666778999999999999876 56777788999999999999987532 334556899999999999987 567889999
Q ss_pred CcEEEccCCCCChhh-hhhccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccChhHHHhccCCCCCcEEee
Q 009672 424 LRSLEICGGGLTDAG-VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 502 (529)
Q Consensus 424 L~~L~l~~~~l~~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 502 (529)
|+.|.+.+|+++-.+ |..++++..|+++..++| . ....|++++.|+.|+.|.++.|.+.. .|+++.-++-|+.||+
T Consensus 293 L~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN-~-LElVPEglcRC~kL~kL~L~~NrLiT-LPeaIHlL~~l~vLDl 369 (1255)
T KOG0444|consen 293 LTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANN-K-LELVPEGLCRCVKLQKLKLDHNRLIT-LPEAIHLLPDLKVLDL 369 (1255)
T ss_pred HHHHHhccCcccccCCccchhhhhhhHHHHhhcc-c-cccCchhhhhhHHHHHhcccccceee-chhhhhhcCCcceeec
Confidence 999999999876544 557888999999999998 4 45689999999999999999999875 3677778899999999
Q ss_pred cCcc
Q 009672 503 ESCK 506 (529)
Q Consensus 503 ~~~~ 506 (529)
+.|+
T Consensus 370 reNp 373 (1255)
T KOG0444|consen 370 RENP 373 (1255)
T ss_pred cCCc
Confidence 9994
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-28 Score=218.57 Aligned_cols=415 Identities=19% Similarity=0.216 Sum_probs=226.3
Q ss_pred eeEEEecCcccCchhhhhccCCCCCCeEeccCCcccCchhhhhccCCCCCCEEEcCCCCccchhHHHHHhCCCCCCEEec
Q 009672 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL 138 (529)
Q Consensus 59 l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 138 (529)
+.+++++++++. ..+++++.+..++.|+.++| +++. .++.++.+.+|+.|+++++.. ...++.++.+-.|+.++.
T Consensus 70 l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n-~ls~-lp~~i~s~~~l~~l~~s~n~~--~el~~~i~~~~~l~dl~~ 144 (565)
T KOG0472|consen 70 LTVLNVHDNKLS-QLPAAIGELEALKSLNVSHN-KLSE-LPEQIGSLISLVKLDCSSNEL--KELPDSIGRLLDLEDLDA 144 (565)
T ss_pred eeEEEeccchhh-hCCHHHHHHHHHHHhhcccc-hHhh-ccHHHhhhhhhhhhhccccce--eecCchHHHHhhhhhhhc
Confidence 556666665554 34444555555555555554 2322 244445555555555555543 233444444444444444
Q ss_pred cCccccccccccccC-----------------------CCcCcEEeccCCcccCccccccccCCCCCCeEEccCCCCChh
Q 009672 139 ERCTRIHGGLVNLKG-----------------------LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS 195 (529)
Q Consensus 139 ~~~~~~~~~~~~~~~-----------------------~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 195 (529)
.+| .....++.+.+ ++.|++++... +.-+..|+.++.+.+|..|++..|.+...
T Consensus 145 ~~N-~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~--N~L~tlP~~lg~l~~L~~LyL~~Nki~~l 221 (565)
T KOG0472|consen 145 TNN-QISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNS--NLLETLPPELGGLESLELLYLRRNKIRFL 221 (565)
T ss_pred ccc-ccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccch--hhhhcCChhhcchhhhHHHHhhhcccccC
Confidence 443 22223333333 55555555543 22233455556666666666655554431
Q ss_pred HHHHhhccCccchhhhhhhhHHHhhhhhhhhcccCCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhh
Q 009672 196 GIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 275 (529)
Q Consensus 196 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 275 (529)
| .|..|..|.++.++.+.+.....+..+.++++..||+..|++.+ .|+.+.
T Consensus 222 ---------------------------P-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke-~Pde~c 272 (565)
T KOG0472|consen 222 ---------------------------P-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKE-VPDEIC 272 (565)
T ss_pred ---------------------------C-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccccccc-CchHHH
Confidence 1 34455667777777666665544445567777777777777655 345666
Q ss_pred cCCCccEEEccCCCCChHHHHhhcCCCCCCEEECCCCCCChhhhhhhcCC--CCCCeEE-------cCCCccCh------
Q 009672 276 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL--CNLKCLE-------LSDTQVGS------ 340 (529)
Q Consensus 276 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~L~~L~-------l~~~~~~~------ 340 (529)
.+++|+.|++++|.++. .|..++++ .|+.|.+.+|.+..+-...+.+- .-|++|. ++...-+.
T Consensus 273 lLrsL~rLDlSNN~is~-Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~ 350 (565)
T KOG0472|consen 273 LLRSLERLDLSNNDISS-LPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTL 350 (565)
T ss_pred HhhhhhhhcccCCcccc-CCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCC
Confidence 66677777777777663 44456666 67777777765543221111110 0111111 00000000
Q ss_pred --hhhhhccCCCCCCeEeccCCCCChhhhhhhcCC--CCCcEEECCCCCCCHH-----------------------HHHH
Q 009672 341 --SGLRHLSGLTNLESINLSFTGISDGSLRKLAGL--SSLKSLNLDARQITDT-----------------------GLAA 393 (529)
Q Consensus 341 --~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~-----------------------~~~~ 393 (529)
..........+.+.|++++-.++..+...|... .-...++++.|.+... .+..
T Consensus 351 ~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~ 430 (565)
T KOG0472|consen 351 PSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLE 430 (565)
T ss_pred CCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHH
Confidence 000000111234444444444443332222211 1133344444433322 2344
Q ss_pred HhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhCCCCC
Q 009672 394 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 473 (529)
Q Consensus 394 l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L 473 (529)
++.+++|.-|++++|-+.+.+. -++.+..|+.|+++.|.+... |..+.....++.+-.++| ++....++.+.++.+|
T Consensus 431 l~~l~kLt~L~L~NN~Ln~LP~-e~~~lv~Lq~LnlS~NrFr~l-P~~~y~lq~lEtllas~n-qi~~vd~~~l~nm~nL 507 (565)
T KOG0472|consen 431 LSQLQKLTFLDLSNNLLNDLPE-EMGSLVRLQTLNLSFNRFRML-PECLYELQTLETLLASNN-QIGSVDPSGLKNMRNL 507 (565)
T ss_pred HHhhhcceeeecccchhhhcch-hhhhhhhhheecccccccccc-hHHHhhHHHHHHHHhccc-cccccChHHhhhhhhc
Confidence 5566777788887776665533 344566688888888776543 555555556777777777 7888778889999999
Q ss_pred CeeeccCCccChhHHHhccCCCCCcEEeecCccCChhHHHHhh
Q 009672 474 VSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 516 (529)
Q Consensus 474 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 516 (529)
..|++.+|.+...++ .++++.+|++|++.||+|..+....+-
T Consensus 508 ~tLDL~nNdlq~IPp-~LgnmtnL~hLeL~gNpfr~Pr~~iLm 549 (565)
T KOG0472|consen 508 TTLDLQNNDLQQIPP-ILGNMTNLRHLELDGNPFRQPRHQILM 549 (565)
T ss_pred ceeccCCCchhhCCh-hhccccceeEEEecCCccCCCHHHHhc
Confidence 999999999987654 689999999999999999865544443
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-27 Score=233.52 Aligned_cols=442 Identities=22% Similarity=0.226 Sum_probs=306.7
Q ss_pred eeEEEecCcccCchhhhhccCCCCCCeEeccCCcccCchhhhhccCCCCCCEEEcCCCCccchhHHHHHhCCCCCCEEec
Q 009672 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL 138 (529)
Q Consensus 59 l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 138 (529)
++.|++..|-+.....+.....-.|+.|++++| .+... +..+..+++|+.|+++.|.+ ...|....++.+|++++|
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn-~~~~f-p~~it~l~~L~~ln~s~n~i--~~vp~s~~~~~~l~~lnL 98 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNN-QISSF-PIQITLLSHLRQLNLSRNYI--RSVPSSCSNMRNLQYLNL 98 (1081)
T ss_pred HHhhhccccccccCchHHhhheeeeEEeecccc-ccccC-CchhhhHHHHhhcccchhhH--hhCchhhhhhhcchhhee
Confidence 788888888776555454555556999999977 44443 56778889999999999864 567788889999999999
Q ss_pred cCccccccccccccCCCcCcEEeccCCcccCccccccccCCCCCCeEEccCC-CCChhHHHHhhccCccchhhhhhhhHH
Q 009672 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS-KVTDSGIAYLKGLSISSVIFILCSMII 217 (529)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~ 217 (529)
.++ .....+..+..+.+|+.|+++.+.... .|.-+..+..+..+..++| .+...+...+..+......
T Consensus 99 ~~n-~l~~lP~~~~~lknl~~LdlS~N~f~~--~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~-------- 167 (1081)
T KOG0618|consen 99 KNN-RLQSLPASISELKNLQYLDLSFNHFGP--IPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNV-------- 167 (1081)
T ss_pred ccc-hhhcCchhHHhhhcccccccchhccCC--CchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhh--------
Confidence 885 677778888899999999999844322 3444555566666666655 1111111111111000000
Q ss_pred HhhhhhhhhcccCCccEEEccCCCCCHHHHHHh-----------------hcCCCCCeEecCCCcCChhhhHhhhcCCCc
Q 009672 218 RLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSL-----------------SALGSLFYLNLNRCQLSDDGCEKFSKIGSL 280 (529)
Q Consensus 218 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-----------------~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 280 (529)
....+...+.+++. .|++..+.+.......+ ..-++|+.|+.++|.+..... .....+|
T Consensus 168 l~~~~~~~i~~l~~--~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~--~p~p~nl 243 (1081)
T KOG0618|consen 168 LGGSFLIDIYNLTH--QLDLRYNEMEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDV--HPVPLNL 243 (1081)
T ss_pred cccchhcchhhhhe--eeecccchhhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeecc--ccccccc
Confidence 00001111111122 35555554431111000 112455666666665552221 1123578
Q ss_pred cEEEccCCCCChHHHHhhcCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCC
Q 009672 281 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 360 (529)
Q Consensus 281 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 360 (529)
+.++++++.+.. .|.|+..+.+|+.+....|.+.. .+..+....+|+.|....|.+... +.......+|+.|++..|
T Consensus 244 ~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~~-lp~ri~~~~~L~~l~~~~nel~yi-p~~le~~~sL~tLdL~~N 320 (1081)
T KOG0618|consen 244 QYLDISHNNLSN-LPEWIGACANLEALNANHNRLVA-LPLRISRITSLVSLSAAYNELEYI-PPFLEGLKSLRTLDLQSN 320 (1081)
T ss_pred eeeecchhhhhc-chHHHHhcccceEecccchhHHh-hHHHHhhhhhHHHHHhhhhhhhhC-CCcccccceeeeeeehhc
Confidence 899999888875 45888889999999998887754 455666678888888888876544 344566788999999999
Q ss_pred CCChhhhhhhcCCC-CCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhh
Q 009672 361 GISDGSLRKLAGLS-SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 439 (529)
Q Consensus 361 ~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~ 439 (529)
.+.......+.... +++.+..+.+++....-..=...+.|+.|++.+|.+++.....+-+.++|+.|++++|.+.....
T Consensus 321 ~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpa 400 (1081)
T KOG0618|consen 321 NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPA 400 (1081)
T ss_pred cccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCH
Confidence 88876665554333 36777777776665421111245678899999999999888888899999999999999988877
Q ss_pred hhccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccChhHHHhccCCCCCcEEeecCccCChhHHHHhhcCC
Q 009672 440 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRD 519 (529)
Q Consensus 440 ~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 519 (529)
..+.+++.|++|+++|| .++. +|..+..+++|++|...+|.+...+ .+..+++|+.+|++.|.++.-.+.... .
T Consensus 401 s~~~kle~LeeL~LSGN-kL~~-Lp~tva~~~~L~tL~ahsN~l~~fP--e~~~l~qL~~lDlS~N~L~~~~l~~~~--p 474 (1081)
T KOG0618|consen 401 SKLRKLEELEELNLSGN-KLTT-LPDTVANLGRLHTLRAHSNQLLSFP--ELAQLPQLKVLDLSCNNLSEVTLPEAL--P 474 (1081)
T ss_pred HHHhchHHhHHHhcccc-hhhh-hhHHHHhhhhhHHHhhcCCceeech--hhhhcCcceEEecccchhhhhhhhhhC--C
Confidence 88899999999999999 7776 5688899999999999999998754 677899999999999999987666544 5
Q ss_pred CCCceecCC
Q 009672 520 LPNLVSFRP 528 (529)
Q Consensus 520 ~~~l~~l~~ 528 (529)
+|+|++|++
T Consensus 475 ~p~LkyLdl 483 (1081)
T KOG0618|consen 475 SPNLKYLDL 483 (1081)
T ss_pred Ccccceeec
Confidence 589998875
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.5e-28 Score=214.39 Aligned_cols=431 Identities=23% Similarity=0.237 Sum_probs=282.9
Q ss_pred CHHHHHHHHhcCCceeEEEecCcccCchhhhhccCCCCCCeEeccCCcccCchhhhhccCCCCCCEEEcCCCCccchhHH
Q 009672 45 NDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124 (529)
Q Consensus 45 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 124 (529)
.+.|+.... ++.+++++|.+.. ..+.+.++..|.+|++++|. +.. .+.+++.+..++.|+.+++.. ..+|
T Consensus 38 ~e~wW~qv~-----l~~lils~N~l~~-l~~dl~nL~~l~vl~~~~n~-l~~-lp~aig~l~~l~~l~vs~n~l--s~lp 107 (565)
T KOG0472|consen 38 GENWWEQVD-----LQKLILSHNDLEV-LREDLKNLACLTVLNVHDNK-LSQ-LPAAIGELEALKSLNVSHNKL--SELP 107 (565)
T ss_pred hhhhhhhcc-----hhhhhhccCchhh-ccHhhhcccceeEEEeccch-hhh-CCHHHHHHHHHHHhhcccchH--hhcc
Confidence 466766554 8889999998873 44557899999999999984 443 377888999999999999984 6789
Q ss_pred HHHhCCCCCCEEeccCccccccccccccCCCcCcEEeccCCcccCccccccccCCCCCCeEEccCCCCChhHHHHhhccC
Q 009672 125 KAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLS 204 (529)
Q Consensus 125 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 204 (529)
..+....+|+.++++.+ .+...+..++.+..|+.++..+++ +.. .+.++..+.++..+++.+|.+....+..+. +
T Consensus 108 ~~i~s~~~l~~l~~s~n-~~~el~~~i~~~~~l~dl~~~~N~-i~s-lp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m- 182 (565)
T KOG0472|consen 108 EQIGSLISLVKLDCSSN-ELKELPDSIGRLLDLEDLDATNNQ-ISS-LPEDMVNLSKLSKLDLEGNKLKALPENHIA-M- 182 (565)
T ss_pred HHHhhhhhhhhhhcccc-ceeecCchHHHHhhhhhhhccccc-ccc-CchHHHHHHHHHHhhccccchhhCCHHHHH-H-
Confidence 99999999999999986 566777888899999999988844 443 567888888999999999988765555443 3
Q ss_pred ccchhhhhhhhHHHhhhhhhhhcccCCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEE
Q 009672 205 ISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 284 (529)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 284 (529)
+.|++|+...+.+.. .|+.++.+.+|..|++..|++...+ .|..+..|.++.
T Consensus 183 -------------------------~~L~~ld~~~N~L~t-lP~~lg~l~~L~~LyL~~Nki~~lP--ef~gcs~L~Elh 234 (565)
T KOG0472|consen 183 -------------------------KRLKHLDCNSNLLET-LPPELGGLESLELLYLRRNKIRFLP--EFPGCSLLKELH 234 (565)
T ss_pred -------------------------HHHHhcccchhhhhc-CChhhcchhhhHHHHhhhcccccCC--CCCccHHHHHHH
Confidence 455555554444332 3444555555555555555554321 444455555555
Q ss_pred ccCCCCChHHHHh-hcCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCC
Q 009672 285 LGFNEITDECLVH-LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 363 (529)
Q Consensus 285 l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 363 (529)
++.|++.- .|.. ..+++++..|++.+|++.+ .+..++.+.+|++|+++.|.++... ..++++ .|+.|.+.+|.+.
T Consensus 235 ~g~N~i~~-lpae~~~~L~~l~vLDLRdNklke-~Pde~clLrsL~rLDlSNN~is~Lp-~sLgnl-hL~~L~leGNPlr 310 (565)
T KOG0472|consen 235 VGENQIEM-LPAEHLKHLNSLLVLDLRDNKLKE-VPDEICLLRSLERLDLSNNDISSLP-YSLGNL-HLKFLALEGNPLR 310 (565)
T ss_pred hcccHHHh-hHHHHhcccccceeeecccccccc-CchHHHHhhhhhhhcccCCccccCC-cccccc-eeeehhhcCCchH
Confidence 55554432 2222 3345555555555555443 3334444555555555555544322 223333 4444444444222
Q ss_pred hhhh--------------------------------------hhh---cCCCCCcEEECCCCCCCHHHHHHHhc--CCCC
Q 009672 364 DGSL--------------------------------------RKL---AGLSSLKSLNLDARQITDTGLAALTS--LTGL 400 (529)
Q Consensus 364 ~~~~--------------------------------------~~l---~~~~~L~~L~l~~~~~~~~~~~~l~~--~~~L 400 (529)
.+-- ..+ ....+.+.|++++-.++..+.+.|.. -.-.
T Consensus 311 TiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~V 390 (565)
T KOG0472|consen 311 TIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIV 390 (565)
T ss_pred HHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcce
Confidence 1100 001 12345677888887777765555542 2235
Q ss_pred CEEecCCCCCChH-----------------------HHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCC
Q 009672 401 THLDLFGARITDS-----------------------GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 457 (529)
Q Consensus 401 ~~L~l~~~~l~~~-----------------------~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~ 457 (529)
..++++.|++... .+..+..+++|+.|++++|.+-+. |..++.+..|+.|+++.|
T Consensus 391 t~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~L-P~e~~~lv~Lq~LnlS~N- 468 (565)
T KOG0472|consen 391 TSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDL-PEEMGSLVRLQTLNLSFN- 468 (565)
T ss_pred EEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhc-chhhhhhhhhheeccccc-
Confidence 6677777665432 244556788899999988877654 666777788999999998
Q ss_pred CCChhHHHHHhCCCCCCeeeccCCccChhHHHhccCCCCCcEEeecCccCChhHHHHhhcCCCCCceecCC
Q 009672 458 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRP 528 (529)
Q Consensus 458 ~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~l~~l~~ 528 (529)
.+.. +|..+.....++.+..++|++....+.++.++++|.+||+.+|.+...+.. + ..|++|+.|.+
T Consensus 469 rFr~-lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~-L--gnmtnL~hLeL 535 (565)
T KOG0472|consen 469 RFRM-LPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPI-L--GNMTNLRHLEL 535 (565)
T ss_pred cccc-chHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChh-h--ccccceeEEEe
Confidence 5554 567777777888888888999888888899999999999999977643322 2 25778887754
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.2e-21 Score=211.31 Aligned_cols=402 Identities=21% Similarity=0.178 Sum_probs=220.4
Q ss_pred cHHHHHHHHHHhhhcccCChhhhhhhccCccceeccCCCCCCCHHHHHHHH--hcCCceeEEEecCcccC--chhhhhcc
Q 009672 3 PRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIA--SQGSSLLSVDLSGSDVT--DSGLIHLK 78 (529)
Q Consensus 3 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~--~~~~~l~~l~l~~~~~~--~~~~~~l~ 78 (529)
|||+.+++.+++++.+...+.....+.... .....+. .....++.+.+.-..+. .....+|.
T Consensus 490 MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~--------------di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~ 555 (1153)
T PLN03210 490 MHSLLQEMGKEIVRAQSNEPGEREFLVDAK--------------DICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFK 555 (1153)
T ss_pred hhhHHHHHHHHHHHhhcCCCCcceeEeCHH--------------HHHHHHHhCcccceeeEEEeccCccceeeecHHHHh
Confidence 899999999999887652211111110000 0000000 01123444433322221 12334466
Q ss_pred CCCCCCeEeccCCc-----ccCchhhhhccCCC-CCCEEEcCCCCccchhHHHHHhCCCCCCEEeccCcccccccccccc
Q 009672 79 DCSNLQSLDFNFCI-----QISDGGLEHLRGLS-NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152 (529)
Q Consensus 79 ~~~~L~~L~l~~~~-----~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 152 (529)
.+++|+.|.+..+. ......+..|..++ +|+.|.+.++.. ..+|..| .+.+|+.|++.++. +...+..+.
T Consensus 556 ~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l--~~lP~~f-~~~~L~~L~L~~s~-l~~L~~~~~ 631 (1153)
T PLN03210 556 GMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPL--RCMPSNF-RPENLVKLQMQGSK-LEKLWDGVH 631 (1153)
T ss_pred cCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCC--CCCCCcC-CccCCcEEECcCcc-ccccccccc
Confidence 77777777775431 01111233344443 577777777653 3445555 46777777777753 444455556
Q ss_pred CCCcCcEEeccCCcccCccccccccCCCCCCeEEccCCCCChhHHHHhhccCccchhhhhhhhHHHhhhhhhhhcccCCc
Q 009672 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKL 232 (529)
Q Consensus 153 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 232 (529)
.+++|+.|+++++..+... +.+..+++|+.|++.+|......+.. +..+++|
T Consensus 632 ~l~~Lk~L~Ls~~~~l~~i--p~ls~l~~Le~L~L~~c~~L~~lp~s--------------------------i~~L~~L 683 (1153)
T PLN03210 632 SLTGLRNIDLRGSKNLKEI--PDLSMATNLETLKLSDCSSLVELPSS--------------------------IQYLNKL 683 (1153)
T ss_pred cCCCCCEEECCCCCCcCcC--CccccCCcccEEEecCCCCccccchh--------------------------hhccCCC
Confidence 6777777777765554422 34666777777777765432222222 3334777
Q ss_pred cEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEECCCC
Q 009672 233 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 312 (529)
Q Consensus 233 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 312 (529)
+.|++++|......|..+ ++++|+.|++++|......+. ...+|+.|+++++.+.. .|..+ .+++|+.|.+.++
T Consensus 684 ~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~~-lP~~~-~l~~L~~L~l~~~ 757 (1153)
T PLN03210 684 EDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIEE-FPSNL-RLENLDELILCEM 757 (1153)
T ss_pred CEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc---ccCCcCeeecCCCcccc-ccccc-ccccccccccccc
Confidence 777777764333333322 567777777777754333222 23467777777776643 33322 4566776666553
Q ss_pred CCCh-------hhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCC
Q 009672 313 GIGD-------EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 385 (529)
Q Consensus 313 ~~~~-------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 385 (529)
.... ..+.....+++|+.|++++|......+..++++++|+.|++++|..-...+... ++++|+.|++++|.
T Consensus 758 ~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~ 836 (1153)
T PLN03210 758 KSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCS 836 (1153)
T ss_pred chhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCC
Confidence 2111 011112234677777777776554555566777777888777763222222222 56777777777764
Q ss_pred CCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCCh
Q 009672 386 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 461 (529)
Q Consensus 386 ~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~ 461 (529)
.....+. ..++|+.|++++|.++.. |..+..+++|+.|++++|+-....+..+..++.|+.+++++|+.++.
T Consensus 837 ~L~~~p~---~~~nL~~L~Ls~n~i~~i-P~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~ 908 (1153)
T PLN03210 837 RLRTFPD---ISTNISDLNLSRTGIEEV-PWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTE 908 (1153)
T ss_pred ccccccc---cccccCEeECCCCCCccC-hHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccc
Confidence 3222111 235677778877777654 44567777888888877533222344455667777778777765543
|
syringae 6; Provisional |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.3e-19 Score=193.49 Aligned_cols=338 Identities=21% Similarity=0.196 Sum_probs=174.9
Q ss_pred hhccCCCCCCEEEcCCCCc-----cchhHHHHHhCCC-CCCEEeccCccccccccccccCCCcCcEEeccCCcccCcccc
Q 009672 100 EHLRGLSNLTSLSFRRNNA-----ITAQGMKAFAGLI-NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173 (529)
Q Consensus 100 ~~~~~l~~L~~L~l~~~~~-----~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 173 (529)
..|..+++|+.|.+..+.. ....+|..|..++ +|+.|.+.+++ ....+..+ ...+|++|++.++ .+.. .+
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~-l~~lP~~f-~~~~L~~L~L~~s-~l~~-L~ 627 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYP-LRCMPSNF-RPENLVKLQMQGS-KLEK-LW 627 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCC-CCCCCCcC-CccCCcEEECcCc-cccc-cc
Confidence 4466677777776644320 1122344444443 46677666653 23333333 3466777777663 2332 33
Q ss_pred ccccCCCCCCeEEccCCC-CChhHHHHhhccCccchhhhhhhhHHHhhhhhhhhcccCCccEEEccCCCCCHHHHHHhhc
Q 009672 174 KPLSGLTNLKSLQISCSK-VTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSA 252 (529)
Q Consensus 174 ~~l~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 252 (529)
..+..+++|+.|+++++. +... + . ++.+++|+.|++.+|......+..+.+
T Consensus 628 ~~~~~l~~Lk~L~Ls~~~~l~~i-p-~--------------------------ls~l~~Le~L~L~~c~~L~~lp~si~~ 679 (1153)
T PLN03210 628 DGVHSLTGLRNIDLRGSKNLKEI-P-D--------------------------LSMATNLETLKLSDCSSLVELPSSIQY 679 (1153)
T ss_pred cccccCCCCCEEECCCCCCcCcC-C-c--------------------------cccCCcccEEEecCCCCccccchhhhc
Confidence 445566677777776543 2211 0 1 223367777777776544445566666
Q ss_pred CCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEE
Q 009672 253 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 332 (529)
Q Consensus 253 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 332 (529)
+++|+.|++++|......|..+ .+++|+.|++++|......|. ...+|+.|++.++.+... +..+ .+++|+.|.
T Consensus 680 L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~~l-P~~~-~l~~L~~L~ 753 (1153)
T PLN03210 680 LNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIEEF-PSNL-RLENLDELI 753 (1153)
T ss_pred cCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc---ccCCcCeeecCCCccccc-cccc-ccccccccc
Confidence 7777777777664333333322 456677777766643322221 235666777766655432 2111 355666666
Q ss_pred cCCCccC-------hhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCC-CCHHHHHHHhcCCCCCEEe
Q 009672 333 LSDTQVG-------SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ-ITDTGLAALTSLTGLTHLD 404 (529)
Q Consensus 333 l~~~~~~-------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~ 404 (529)
+..+... ...+.....+++|+.|++++|......+..++++++|+.|++++|. +... +... .+++|+.|+
T Consensus 754 l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~L-P~~~-~L~sL~~L~ 831 (1153)
T PLN03210 754 LCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETL-PTGI-NLESLESLD 831 (1153)
T ss_pred ccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCee-CCCC-CccccCEEE
Confidence 5543211 0001111223566666666664443344556666666666666543 2222 2221 456666666
Q ss_pred cCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCc
Q 009672 405 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 482 (529)
Q Consensus 405 l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 482 (529)
+++|......+. ...+|+.|++++|.++.. |..+..+++|+.|++++|.++.. ++..+..+++|+.+++++|.
T Consensus 832 Ls~c~~L~~~p~---~~~nL~~L~Ls~n~i~~i-P~si~~l~~L~~L~L~~C~~L~~-l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 832 LSGCSRLRTFPD---ISTNISDLNLSRTGIEEV-PWWIEKFSNLSFLDMNGCNNLQR-VSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCCCCccccccc---cccccCEeECCCCCCccC-hHHHhcCCCCCEEECCCCCCcCc-cCcccccccCCCeeecCCCc
Confidence 666532222111 124566666666666543 44555666666666666655554 33344556666666666663
|
syringae 6; Provisional |
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.81 E-value=3e-18 Score=162.91 Aligned_cols=92 Identities=28% Similarity=0.355 Sum_probs=44.1
Q ss_pred HHhhcCCCCCeEecCCCcCChhh----hHhhhcCCCccEEEccCCCCC------hHHHHhhcCCCCCCEEECCCCCCChh
Q 009672 248 DSLSALGSLFYLNLNRCQLSDDG----CEKFSKIGSLKVLNLGFNEIT------DECLVHLKGLTNLESLNLDSCGIGDE 317 (529)
Q Consensus 248 ~~~~~~~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~------~~~~~~~~~~~~L~~L~l~~~~~~~~ 317 (529)
..+..+.+|+.++++++.++... +..+...+.++.++++++.+. ...+..+..+++|+.|+++++.+...
T Consensus 17 ~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 96 (319)
T cd00116 17 ELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPD 96 (319)
T ss_pred HHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChh
Confidence 33444555666666666654432 122334455666666655443 11222344455666666655554432
Q ss_pred hhhhhcCCC---CCCeEEcCCCccC
Q 009672 318 GLVNLTGLC---NLKCLELSDTQVG 339 (529)
Q Consensus 318 ~~~~~~~~~---~L~~L~l~~~~~~ 339 (529)
....+..+. +|+.|++++|.+.
T Consensus 97 ~~~~~~~l~~~~~L~~L~ls~~~~~ 121 (319)
T cd00116 97 GCGVLESLLRSSSLQELKLNNNGLG 121 (319)
T ss_pred HHHHHHHHhccCcccEEEeeCCccc
Confidence 332332222 2555555555444
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.80 E-value=8e-18 Score=159.96 Aligned_cols=264 Identities=28% Similarity=0.330 Sum_probs=125.9
Q ss_pred ccCCCCCCeEEccCCCCChhHHHHhhccCccchhhhhhhhHHHhhhhhhhhcccCCccEEEccCCCCC------HHHHHH
Q 009672 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVT------AACLDS 249 (529)
Q Consensus 176 l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~------~~~~~~ 249 (529)
+..+..|++|+++++.+++.....+... +...+.+++++++++.+. ...+..
T Consensus 19 ~~~l~~L~~l~l~~~~l~~~~~~~i~~~----------------------l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~ 76 (319)
T cd00116 19 LPKLLCLQVLRLEGNTLGEEAAKALASA----------------------LRPQPSLKELCLSLNETGRIPRGLQSLLQG 76 (319)
T ss_pred HHHHhhccEEeecCCCCcHHHHHHHHHH----------------------HhhCCCceEEeccccccCCcchHHHHHHHH
Confidence 3445556666666666655443333222 333355666666665544 122334
Q ss_pred hhcCCCCCeEecCCCcCChhhhHhhhcCC---CccEEEccCCCCChHHH----HhhcCC-CCCCEEECCCCCCChhhhhh
Q 009672 250 LSALGSLFYLNLNRCQLSDDGCEKFSKIG---SLKVLNLGFNEITDECL----VHLKGL-TNLESLNLDSCGIGDEGLVN 321 (529)
Q Consensus 250 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~---~L~~L~l~~~~~~~~~~----~~~~~~-~~L~~L~l~~~~~~~~~~~~ 321 (529)
+..+++|+.|++++|.+....+..+..+. +|++|++++|.+.+... ..+..+ ++|+.|++.+|.++.....
T Consensus 77 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~- 155 (319)
T cd00116 77 LTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCE- 155 (319)
T ss_pred HHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHH-
Confidence 44555666666666655433333333222 25555555555542111 122333 4555555555544311111
Q ss_pred hcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhh----hhhcCCCCCcEEECCCCCCCHHHHH----H
Q 009672 322 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL----RKLAGLSSLKSLNLDARQITDTGLA----A 393 (529)
Q Consensus 322 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~l~~~~~~~~~~~----~ 393 (529)
.....+..++.|+.|++++|.+.+... ..+..+++|+.|++++|.+.+.... .
T Consensus 156 -------------------~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 216 (319)
T cd00116 156 -------------------ALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET 216 (319)
T ss_pred -------------------HHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence 011222333444444444444442211 1223334555555555555433222 2
Q ss_pred HhcCCCCCEEecCCCCCChHHHHhhh-----cCCCCcEEEccCCCCChhhh----hhccCCCCCCeEecCCCCCCChhH-
Q 009672 394 LTSLTGLTHLDLFGARITDSGAAYLR-----NFKNLRSLEICGGGLTDAGV----KHIKDLSSLTLLNLSQNCNLTDKT- 463 (529)
Q Consensus 394 l~~~~~L~~L~l~~~~l~~~~~~~~~-----~~~~L~~L~l~~~~l~~~~~----~~~~~~~~L~~L~l~~~~~l~~~~- 463 (529)
+..+++|+.|++++|.+++.....+. ..+.|++|++++|.+++.+. ..+..+++|+++++++| .+++..
T Consensus 217 ~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N-~l~~~~~ 295 (319)
T cd00116 217 LASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGN-KFGEEGA 295 (319)
T ss_pred hcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCC-CCcHHHH
Confidence 33455666666666666553332221 13566666666666653332 23344466777777776 566442
Q ss_pred ---HHHHhCC-CCCCeeeccCCc
Q 009672 464 ---LELISGL-TGLVSLNVSNSR 482 (529)
Q Consensus 464 ---~~~l~~l-~~L~~L~l~~~~ 482 (529)
...+... +.|+.|++.+++
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 296 QLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHHHHHHhhcCCchhhcccCCCC
Confidence 2233344 567777776665
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.4e-21 Score=170.88 Aligned_cols=138 Identities=25% Similarity=0.228 Sum_probs=115.7
Q ss_pred HHhcCCceeEEEecCcccCchhhhhccCCCCCCeEeccCCcccCchhhhhccCCCCCCEEEcCCCCccchhHHHHHhCCC
Q 009672 52 IASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI 131 (529)
Q Consensus 52 ~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 131 (529)
+..-++..+.+.|..|+|+...+.+|+.+++||+|||++| .++.+++..|+.+++|-.|-+-+++.+++.....|.++.
T Consensus 62 P~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~ 140 (498)
T KOG4237|consen 62 PANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLS 140 (498)
T ss_pred cccCCCcceEEEeccCCcccCChhhccchhhhceeccccc-chhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHH
Confidence 3345688999999999999999999999999999999997 799999999999999988888885558888888999999
Q ss_pred CCCEEeccCccccccccccccCCCcCcEEeccCCcccCccccccccCCCCCCeEEccCCC
Q 009672 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191 (529)
Q Consensus 132 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 191 (529)
.|+.|.+.-|.........+..+++|..|.+.+ +.+....-..+..+..++.+.+..|.
T Consensus 141 slqrLllNan~i~Cir~~al~dL~~l~lLslyD-n~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 141 SLQRLLLNANHINCIRQDALRDLPSLSLLSLYD-NKIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred HHHHHhcChhhhcchhHHHHHHhhhcchhcccc-hhhhhhccccccchhccchHhhhcCc
Confidence 999999887766656667888999999999987 55555544577788888888887765
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.5e-19 Score=161.18 Aligned_cols=279 Identities=22% Similarity=0.226 Sum_probs=201.0
Q ss_pred CCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccC-CCCChHHHHhhcCCCCCCEEE
Q 009672 230 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLN 308 (529)
Q Consensus 230 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~ 308 (529)
+.-..+++..|.++...+.+|+.+++|+.|++++|.++...+++|..++.+-+|-+.+ |++++.....|..+..++-|.
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 4667889999999998888999999999999999999998899998888887777766 788876666788888898888
Q ss_pred CCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCC-hhh-----------hhhhcCCCCC
Q 009672 309 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS-DGS-----------LRKLAGLSSL 376 (529)
Q Consensus 309 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~-----------~~~l~~~~~L 376 (529)
+.-|.+.-+....|..++++..|.+.+|.+.......+..+.+++.+.+..|.+. +.. +..++++...
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~ 226 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV 226 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence 8888777777788888899988888888776655555666677777776655421 111 1112222222
Q ss_pred cEEECCCCCCCHHHHHHHhc-CCCCCEEecCCCCCC-hHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecC
Q 009672 377 KSLNLDARQITDTGLAALTS-LTGLTHLDLFGARIT-DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 454 (529)
Q Consensus 377 ~~L~l~~~~~~~~~~~~l~~-~~~L~~L~l~~~~l~-~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~ 454 (529)
.-..+.+..+.......+.. ...+..--...|... .-+...|..+++|++|++++|+++.+-..+|.+...+++|.+.
T Consensus 227 ~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~ 306 (498)
T KOG4237|consen 227 SPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLT 306 (498)
T ss_pred chHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcC
Confidence 22222233333222222221 111111111223222 2345567888999999999999988888888888899999999
Q ss_pred CCCCCChhHHHHHhCCCCCCeeeccCCccChhHHHhccCCCCCcEEeecCccCCh
Q 009672 455 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 509 (529)
Q Consensus 455 ~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 509 (529)
.| .+....-.+|.++..|+.|++++|+++...+.+|+.+.+|.+|.+-.|++..
T Consensus 307 ~N-~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~C 360 (498)
T KOG4237|consen 307 RN-KLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNC 360 (498)
T ss_pred cc-hHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccC
Confidence 98 7887777788888999999999999988888888888899999998886654
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.1e-15 Score=151.91 Aligned_cols=244 Identities=22% Similarity=0.141 Sum_probs=162.0
Q ss_pred CCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEEC
Q 009672 230 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 309 (529)
Q Consensus 230 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 309 (529)
++|+.|++.+|.+... +. ..++|++|++++|.++..+ . ..++|+.|++++|.+.. .+. ..++|+.|++
T Consensus 222 ~~L~~L~L~~N~Lt~L-P~---lp~~Lk~LdLs~N~LtsLP-~---lp~sL~~L~Ls~N~L~~-Lp~---lp~~L~~L~L 289 (788)
T PRK15387 222 AHITTLVIPDNNLTSL-PA---LPPELRTLEVSGNQLTSLP-V---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWI 289 (788)
T ss_pred cCCCEEEccCCcCCCC-CC---CCCCCcEEEecCCccCccc-C---cccccceeeccCCchhh-hhh---chhhcCEEEC
Confidence 4678888888877653 21 3578888888888877542 2 24578888888887753 332 2356778888
Q ss_pred CCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHH
Q 009672 310 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 389 (529)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 389 (529)
.+|.+..... ..++|+.|++++|.+..... ...+|+.|.+++|.+..... + ..+|+.|++++|.+...
T Consensus 290 s~N~Lt~LP~----~p~~L~~LdLS~N~L~~Lp~----lp~~L~~L~Ls~N~L~~LP~--l--p~~Lq~LdLS~N~Ls~L 357 (788)
T PRK15387 290 FGNQLTSLPV----LPPGLQELSVSDNQLASLPA----LPSELCKLWAYNNQLTSLPT--L--PSGLQELSVSDNQLASL 357 (788)
T ss_pred cCCccccccc----cccccceeECCCCccccCCC----CcccccccccccCccccccc--c--ccccceEecCCCccCCC
Confidence 8887664321 24678888888887765321 12457777888877765321 1 24688888888888764
Q ss_pred HHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhC
Q 009672 390 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 469 (529)
Q Consensus 390 ~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~ 469 (529)
+. ..++|+.|++.+|++...+. ...+|+.|++++|.++... .. .++|+.|++++| .++.. |..
T Consensus 358 P~----lp~~L~~L~Ls~N~L~~LP~----l~~~L~~LdLs~N~Lt~LP-~l---~s~L~~LdLS~N-~LssI-P~l--- 420 (788)
T PRK15387 358 PT----LPSELYKLWAYNNRLTSLPA----LPSGLKELIVSGNRLTSLP-VL---PSELKELMVSGN-RLTSL-PML--- 420 (788)
T ss_pred CC----CCcccceehhhccccccCcc----cccccceEEecCCcccCCC-Cc---ccCCCEEEccCC-cCCCC-Ccc---
Confidence 21 23567788888887776432 2357888888888877532 11 257888888888 66653 322
Q ss_pred CCCCCeeeccCCccChhHHHhccCCCCCcEEeecCccCChhHHHHh
Q 009672 470 LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 515 (529)
Q Consensus 470 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 515 (529)
..+|+.|++++|.+... |..+..+++|+.|++++|+++......+
T Consensus 421 ~~~L~~L~Ls~NqLt~L-P~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 421 PSGLLSLSVYRNQLTRL-PESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred hhhhhhhhhccCccccc-ChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 24677888888888753 4567778888888888888887655544
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.5e-15 Score=151.52 Aligned_cols=265 Identities=21% Similarity=0.128 Sum_probs=173.4
Q ss_pred CcCcEEeccCCcccCccccccccCCCCCCeEEccCCCCChhHHHHhhccCccchhhhhhhhHHHhhhhhhhhcccCCccE
Q 009672 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTL 234 (529)
Q Consensus 155 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 234 (529)
..-..|+++++ .++. .|..+. ++|+.|++..|+++... .. .++|++
T Consensus 201 ~~~~~LdLs~~-~Lts-LP~~l~--~~L~~L~L~~N~Lt~LP-----~l-------------------------p~~Lk~ 246 (788)
T PRK15387 201 NGNAVLNVGES-GLTT-LPDCLP--AHITTLVIPDNNLTSLP-----AL-------------------------PPELRT 246 (788)
T ss_pred CCCcEEEcCCC-CCCc-CCcchh--cCCCEEEccCCcCCCCC-----CC-------------------------CCCCcE
Confidence 34556777763 3442 344443 36777888777776421 11 167888
Q ss_pred EEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEECCCCCC
Q 009672 235 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 314 (529)
Q Consensus 235 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 314 (529)
|++++|.++.. +. ..++|+.|++.+|.+.... . ...+|+.|++++|.+.. .|. ..++|+.|++++|.+
T Consensus 247 LdLs~N~LtsL-P~---lp~sL~~L~Ls~N~L~~Lp-~---lp~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L 314 (788)
T PRK15387 247 LEVSGNQLTSL-PV---LPPGLLELSIFSNPLTHLP-A---LPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQL 314 (788)
T ss_pred EEecCCccCcc-cC---cccccceeeccCCchhhhh-h---chhhcCEEECcCCcccc-ccc---cccccceeECCCCcc
Confidence 88888877653 21 2457778888877765422 2 22467788888887763 222 246788888888876
Q ss_pred ChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHH
Q 009672 315 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 394 (529)
Q Consensus 315 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l 394 (529)
..... ....|+.|++++|.++..+ . ...+|+.|++++|.+..... ...+|+.|++.+|.+...+ .
T Consensus 315 ~~Lp~----lp~~L~~L~Ls~N~L~~LP-~---lp~~Lq~LdLS~N~Ls~LP~----lp~~L~~L~Ls~N~L~~LP-~-- 379 (788)
T PRK15387 315 ASLPA----LPSELCKLWAYNNQLTSLP-T---LPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLTSLP-A-- 379 (788)
T ss_pred ccCCC----CcccccccccccCcccccc-c---cccccceEecCCCccCCCCC----CCcccceehhhccccccCc-c--
Confidence 64321 1246777888887775432 1 12478888888887775332 1356788888888877542 1
Q ss_pred hcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhCCCCCC
Q 009672 395 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 474 (529)
Q Consensus 395 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~ 474 (529)
..++|+.|++++|+++..+. ..++|+.|++++|.++.. +.. ..+|+.|++++| .++. +|..+.++++|+
T Consensus 380 -l~~~L~~LdLs~N~Lt~LP~----l~s~L~~LdLS~N~LssI-P~l---~~~L~~L~Ls~N-qLt~-LP~sl~~L~~L~ 448 (788)
T PRK15387 380 -LPSGLKELIVSGNRLTSLPV----LPSELKELMVSGNRLTSL-PML---PSGLLSLSVYRN-QLTR-LPESLIHLSSET 448 (788)
T ss_pred -cccccceEEecCCcccCCCC----cccCCCEEEccCCcCCCC-Ccc---hhhhhhhhhccC-cccc-cChHHhhccCCC
Confidence 23578888998888876432 236788999999888754 221 246888999998 6775 567788889999
Q ss_pred eeeccCCccChhHHHhc
Q 009672 475 SLNVSNSRITSAGLRHL 491 (529)
Q Consensus 475 ~L~l~~~~~~~~~~~~~ 491 (529)
.|++++|++++..+..+
T Consensus 449 ~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 449 TVNLEGNPLSERTLQAL 465 (788)
T ss_pred eEECCCCCCCchHHHHH
Confidence 99999999988766554
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.5e-14 Score=127.85 Aligned_cols=192 Identities=23% Similarity=0.305 Sum_probs=104.1
Q ss_pred CCCCCCeEEcCCCccChhhhh----hccCCCCCCeEeccCCCCChhhhhh-------------hcCCCCCcEEECCCCCC
Q 009672 324 GLCNLKCLELSDTQVGSSGLR----HLSGLTNLESINLSFTGISDGSLRK-------------LAGLSSLKSLNLDARQI 386 (529)
Q Consensus 324 ~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~~-------------l~~~~~L~~L~l~~~~~ 386 (529)
.+|+|+.+++++|.++...+. .++++..|+.|.+.+|++....... .+.-+.|+++.+.+|.+
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl 169 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL 169 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence 344555555555544433322 2234555555555555554433222 12345666666666666
Q ss_pred CHHHH----HHHhcCCCCCEEecCCCCCChHH----HHhhhcCCCCcEEEccCCCCChhhhhh----ccCCCCCCeEecC
Q 009672 387 TDTGL----AALTSLTGLTHLDLFGARITDSG----AAYLRNFKNLRSLEICGGGLTDAGVKH----IKDLSSLTLLNLS 454 (529)
Q Consensus 387 ~~~~~----~~l~~~~~L~~L~l~~~~l~~~~----~~~~~~~~~L~~L~l~~~~l~~~~~~~----~~~~~~L~~L~l~ 454 (529)
.+.+. ..|...+.|+.+.+..|.|...+ ...+..|++|+.|++..|.++..+..+ +..+++|++|+++
T Consensus 170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~ 249 (382)
T KOG1909|consen 170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG 249 (382)
T ss_pred ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence 54332 23445566777777666555332 334566777777777777666555443 3344667777777
Q ss_pred CCCCCChhHHHHH----h-CCCCCCeeeccCCccChhHHHh----ccCCCCCcEEeecCccC--ChhHHHHhh
Q 009672 455 QNCNLTDKTLELI----S-GLTGLVSLNVSNSRITSAGLRH----LKPLKNLRSLTLESCKV--TANDIKRLQ 516 (529)
Q Consensus 455 ~~~~l~~~~~~~l----~-~l~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~--~~~~~~~l~ 516 (529)
+| .+.......+ . ..|+|+.|.+.+|.++...... +...|.|+.|++++|++ .+..+..+.
T Consensus 250 dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~e~de~i~ei~ 321 (382)
T KOG1909|consen 250 DC-LLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLGEKDEGIDEIA 321 (382)
T ss_pred cc-ccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccccccchhHHHHH
Confidence 77 5554433222 2 3567777777777766544322 23356777777777777 334444433
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=8e-14 Score=142.63 Aligned_cols=256 Identities=20% Similarity=0.214 Sum_probs=183.1
Q ss_pred CCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEEC
Q 009672 230 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 309 (529)
Q Consensus 230 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 309 (529)
.+...|++++..++.. |..+ .+.|+.|++++|.++..+ ..+ .++|++|++++|.+.. .|..+ .++|+.|++
T Consensus 178 ~~~~~L~L~~~~LtsL-P~~I--p~~L~~L~Ls~N~LtsLP-~~l--~~nL~~L~Ls~N~Lts-LP~~l--~~~L~~L~L 248 (754)
T PRK15370 178 NNKTELRLKILGLTTI-PACI--PEQITTLILDNNELKSLP-ENL--QGNIKTLYANSNQLTS-IPATL--PDTIQEMEL 248 (754)
T ss_pred cCceEEEeCCCCcCcC-Cccc--ccCCcEEEecCCCCCcCC-hhh--ccCCCEEECCCCcccc-CChhh--hccccEEEC
Confidence 4567899988877753 3323 257999999999888643 333 2589999999998874 34333 257999999
Q ss_pred CCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHH
Q 009672 310 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 389 (529)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 389 (529)
++|.+..+ +..+ ..+|+.|++++|.+... +..+ .++|+.|++++|.+.... ..+. ++|+.|++++|.+...
T Consensus 249 s~N~L~~L-P~~l--~s~L~~L~Ls~N~L~~L-P~~l--~~sL~~L~Ls~N~Lt~LP-~~lp--~sL~~L~Ls~N~Lt~L 319 (754)
T PRK15370 249 SINRITEL-PERL--PSALQSLDLFHNKISCL-PENL--PEELRYLSVYDNSIRTLP-AHLP--SGITHLNVQSNSLTAL 319 (754)
T ss_pred cCCccCcC-ChhH--hCCCCEEECcCCccCcc-cccc--CCCCcEEECCCCccccCc-ccch--hhHHHHHhcCCccccC
Confidence 99987753 3333 25799999999988753 3222 258999999999887643 2222 4788999999988864
Q ss_pred HHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhC
Q 009672 390 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 469 (529)
Q Consensus 390 ~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~ 469 (529)
+ ..+ .++|+.|++++|.++..+. .+ +++|+.|++++|++... +..+. ++|++|++++| .++... ..+.
T Consensus 320 P-~~l--~~sL~~L~Ls~N~Lt~LP~-~l--~~sL~~L~Ls~N~L~~L-P~~lp--~~L~~LdLs~N-~Lt~LP-~~l~- 387 (754)
T PRK15370 320 P-ETL--PPGLKTLEAGENALTSLPA-SL--PPELQVLDVSKNQITVL-PETLP--PTITTLDVSRN-ALTNLP-ENLP- 387 (754)
T ss_pred C-ccc--cccceeccccCCccccCCh-hh--cCcccEEECCCCCCCcC-Chhhc--CCcCEEECCCC-cCCCCC-HhHH-
Confidence 2 222 3689999999998887543 23 37999999999998754 33332 68999999999 777643 3333
Q ss_pred CCCCCeeeccCCccChhH---HHhccCCCCCcEEeecCccCChhHHHHhh
Q 009672 470 LTGLVSLNVSNSRITSAG---LRHLKPLKNLRSLTLESCKVTANDIKRLQ 516 (529)
Q Consensus 470 l~~L~~L~l~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 516 (529)
+.|+.|++++|.+.... +.....++++..|++.+|+++...++.++
T Consensus 388 -~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls~~tl~~L~ 436 (754)
T PRK15370 388 -AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFSERTIQNMQ 436 (754)
T ss_pred -HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCccHHHHHHHH
Confidence 46999999999987542 22334568899999999999887776654
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.4e-14 Score=129.41 Aligned_cols=301 Identities=27% Similarity=0.426 Sum_probs=141.0
Q ss_pred CceeEEEecCcc-cCchhhhhc-cCCCCCCeEeccCCcccCchhhhhc-cCCCCCCEEEcCCCCccchhHHHHHh-CCCC
Q 009672 57 SSLLSVDLSGSD-VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFA-GLIN 132 (529)
Q Consensus 57 ~~l~~l~l~~~~-~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~~ 132 (529)
..++.+.++|.. +.+.....+ .++|+++.|.+.+|.++++.....+ ..|++|++|++..|..+++...+.+. .|++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 356677776642 222222222 4667777777777766666555555 34677777777776666665555333 5667
Q ss_pred CCEEeccCcccccc-ccc-cccCCCcCcEEeccCCcccCcccccccc-CCCCCCeEEccC-CCCChhHHHHhhccCccch
Q 009672 133 LVKLDLERCTRIHG-GLV-NLKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQISC-SKVTDSGIAYLKGLSISSV 208 (529)
Q Consensus 133 L~~L~l~~~~~~~~-~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~-~~~~~~~~~~l~~~~~~~~ 208 (529)
|++++++.|+.+.+ +.. ...++..++.+...+|............ .+..+-++++.. +.+++.+...+..
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~------ 291 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIAC------ 291 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhh------
Confidence 77777766665444 121 2244455555555555444433332222 334444444332 2334433222211
Q ss_pred hhhhhhhHHHhhhhhhhhcccCCccEEEccCC-CCCHHHHHHhh-cCCCCCeEecCCCc-CChhhhHhhhcCCCccEEEc
Q 009672 209 IFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC-PVTAACLDSLS-ALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNL 285 (529)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~-~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l 285 (529)
.+..|+.++.+++ .+.+.....++ ++++|+.+.++.|+ ++......++
T Consensus 292 -------------------~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~---------- 342 (483)
T KOG4341|consen 292 -------------------GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLG---------- 342 (483)
T ss_pred -------------------hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhh----------
Confidence 1244555555544 22222222332 34455555554443 2221222222
Q ss_pred cCCCCChHHHHhhcCCCCCCEEECCCCCCChhh-h-hhhcCCCCCCeEEcCCCc-cChhhhhhcc----CCCCCCeEecc
Q 009672 286 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEG-L-VNLTGLCNLKCLELSDTQ-VGSSGLRHLS----GLTNLESINLS 358 (529)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~-~~~~~~~~L~~L~l~~~~-~~~~~~~~~~----~~~~L~~L~l~ 358 (529)
.+++.|+.+++..+...... . ..-.+++.|+.+.+++|. +++.+...+. ....++.+.++
T Consensus 343 -------------rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~ 409 (483)
T KOG4341|consen 343 -------------RNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELD 409 (483)
T ss_pred -------------cCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeec
Confidence 23455555555554322111 1 111234555555555543 2333222222 23455666666
Q ss_pred CCC-CChhhhhhhcCCCCCcEEECCCC-CCCHHHHHHHh-cCCCCCEEec
Q 009672 359 FTG-ISDGSLRKLAGLSSLKSLNLDAR-QITDTGLAALT-SLTGLTHLDL 405 (529)
Q Consensus 359 ~~~-~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~l~-~~~~L~~L~l 405 (529)
++. +++.....+..|++|+.+++.++ .++..+...+. ++|+++...+
T Consensus 410 n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 410 NCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAY 459 (483)
T ss_pred CCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhh
Confidence 653 33444455556666666665553 22333333333 5566555433
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.5e-13 Score=121.57 Aligned_cols=159 Identities=26% Similarity=0.373 Sum_probs=73.5
Q ss_pred hcCCCCCCEEECCCCCCChhhhhh-------------hcCCCCCCeEEcCCCccChhhh----hhccCCCCCCeEeccCC
Q 009672 298 LKGLTNLESLNLDSCGIGDEGLVN-------------LTGLCNLKCLELSDTQVGSSGL----RHLSGLTNLESINLSFT 360 (529)
Q Consensus 298 ~~~~~~L~~L~l~~~~~~~~~~~~-------------~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~ 360 (529)
+.++..|++|.+.+|++....... .+.-++|+.+....|++.+.+. ..+..++.|+.+.+..|
T Consensus 116 l~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN 195 (382)
T KOG1909|consen 116 LSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQN 195 (382)
T ss_pred HHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecc
Confidence 344566666666666554332222 1223455555555555443322 22334455555555555
Q ss_pred CCChhhh----hhhcCCCCCcEEECCCCCCCHHHHHH----HhcCCCCCEEecCCCCCChHHHHhh-----hcCCCCcEE
Q 009672 361 GISDGSL----RKLAGLSSLKSLNLDARQITDTGLAA----LTSLTGLTHLDLFGARITDSGAAYL-----RNFKNLRSL 427 (529)
Q Consensus 361 ~~~~~~~----~~l~~~~~L~~L~l~~~~~~~~~~~~----l~~~~~L~~L~l~~~~l~~~~~~~~-----~~~~~L~~L 427 (529)
.+..... ..+..|++|+.|++++|.++..+... ++.+++|+.+++++|.+...+...+ ...|+|+++
T Consensus 196 ~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl 275 (382)
T KOG1909|consen 196 GIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVL 275 (382)
T ss_pred cccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCcee
Confidence 4433222 23345555555555555555433222 2244455555555555544333222 234555555
Q ss_pred EccCCCCChhhhhhc----cCCCCCCeEecCCC
Q 009672 428 EICGGGLTDAGVKHI----KDLSSLTLLNLSQN 456 (529)
Q Consensus 428 ~l~~~~l~~~~~~~~----~~~~~L~~L~l~~~ 456 (529)
.+.+|.++......+ ...|.|++|+|++|
T Consensus 276 ~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 276 ELAGNEITRDAALALAACMAEKPDLEKLNLNGN 308 (382)
T ss_pred ccCcchhHHHHHHHHHHHHhcchhhHHhcCCcc
Confidence 555555544332221 22345555555555
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=3e-13 Score=138.46 Aligned_cols=98 Identities=16% Similarity=0.198 Sum_probs=46.2
Q ss_pred CCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEEC
Q 009672 230 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 309 (529)
Q Consensus 230 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 309 (529)
++|+.|++++|.+... +..+. +.|+.|++++|.+... |..+. .+|+.|++++|.+.. .|..+ .++|+.|++
T Consensus 220 ~nL~~L~Ls~N~LtsL-P~~l~--~~L~~L~Ls~N~L~~L-P~~l~--s~L~~L~Ls~N~L~~-LP~~l--~~sL~~L~L 290 (754)
T PRK15370 220 GNIKTLYANSNQLTSI-PATLP--DTIQEMELSINRITEL-PERLP--SALQSLDLFHNKISC-LPENL--PEELRYLSV 290 (754)
T ss_pred cCCCEEECCCCccccC-Chhhh--ccccEEECcCCccCcC-ChhHh--CCCCEEECcCCccCc-ccccc--CCCCcEEEC
Confidence 4566666666665532 22221 3566666666665532 22222 356666666665542 23222 135556666
Q ss_pred CCCCCChhhhhhhcCCCCCCeEEcCCCccC
Q 009672 310 DSCGIGDEGLVNLTGLCNLKCLELSDTQVG 339 (529)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 339 (529)
++|.+.... ..+ .++|+.|++++|.+.
T Consensus 291 s~N~Lt~LP-~~l--p~sL~~L~Ls~N~Lt 317 (754)
T PRK15370 291 YDNSIRTLP-AHL--PSGITHLNVQSNSLT 317 (754)
T ss_pred CCCccccCc-ccc--hhhHHHHHhcCCccc
Confidence 555444321 111 124455555555443
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.5e-12 Score=118.05 Aligned_cols=306 Identities=30% Similarity=0.439 Sum_probs=213.7
Q ss_pred ccCc--cceeccCCCCCCCHHHHHHHHhcCCceeEEEecCc-ccCchhhhhc-cCCCCCCeEeccCCcccCchhhhhc-c
Q 009672 29 RDCA--LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS-DVTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHL-R 103 (529)
Q Consensus 29 ~~~~--l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~-~ 103 (529)
.+|. ++.+.+.++.++-+.-.......||++.+|.+.++ .+++.....+ ..|+.|+.|++..|..+++.....+ .
T Consensus 134 ~Rcgg~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~ 213 (483)
T KOG4341|consen 134 SRCGGFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAE 213 (483)
T ss_pred hhhccccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHH
Confidence 3454 88888988888888888888888999999999995 5666666666 5788999999999888887777754 5
Q ss_pred CCCCCCEEEcCCCCccchhHHH-HHhCCCCCCEEeccCcccccccc--ccccCCCcCcEEeccCCcccCcccccccc-CC
Q 009672 104 GLSNLTSLSFRRNNAITAQGMK-AFAGLINLVKLDLERCTRIHGGL--VNLKGLMKLESLNIKWCNCITDSDMKPLS-GL 179 (529)
Q Consensus 104 ~l~~L~~L~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~l~-~~ 179 (529)
.|++|++|+++.|.-+++.... .+.+++.++.+..++|....... ..-+.++-+.++++..|+.+++.....+. .+
T Consensus 214 gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c 293 (483)
T KOG4341|consen 214 GCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGC 293 (483)
T ss_pred hhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhh
Confidence 7999999999998866653333 34467888888888875443332 11245667777788888888877655554 57
Q ss_pred CCCCeEEccCC-CCChhHHHHhhccCccchhhhhhhhHHHhhhhhhhhcccCCccEEEccCCC-CCHHHHHHhh-cCCCC
Q 009672 180 TNLKSLQISCS-KVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCP-VTAACLDSLS-ALGSL 256 (529)
Q Consensus 180 ~~L~~L~l~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~-~~~~L 256 (529)
..|+.+..+++ .+++.....+. ..+.+|+.+.+.+|+ +++.....++ +++.|
T Consensus 294 ~~lq~l~~s~~t~~~d~~l~aLg-------------------------~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~L 348 (483)
T KOG4341|consen 294 HALQVLCYSSCTDITDEVLWALG-------------------------QHCHNLQVLELSGCQQFSDRGFTMLGRNCPHL 348 (483)
T ss_pred hHhhhhcccCCCCCchHHHHHHh-------------------------cCCCceEEEeccccchhhhhhhhhhhcCChhh
Confidence 88888888764 45555544442 234889999999885 5555444454 57899
Q ss_pred CeEecCCCcCChhh-hHhh-hcCCCccEEEccCCCC-ChHHHHhh----cCCCCCCEEECCCCC-CChhhhhhhcCCCCC
Q 009672 257 FYLNLNRCQLSDDG-CEKF-SKIGSLKVLNLGFNEI-TDECLVHL----KGLTNLESLNLDSCG-IGDEGLVNLTGLCNL 328 (529)
Q Consensus 257 ~~L~l~~~~~~~~~-~~~l-~~~~~L~~L~l~~~~~-~~~~~~~~----~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L 328 (529)
+.+++..+...... ...+ ..++.|+.+.++++.. ++.....+ .....++.+.++++. +++.....+..+++|
T Consensus 349 e~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~L 428 (483)
T KOG4341|consen 349 ERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNL 428 (483)
T ss_pred hhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCccc
Confidence 99999888654322 2223 2678899999987743 33322222 346788999999984 445566777889999
Q ss_pred CeEEcCCCc-cChhhhh-hccCCCCCCeEeccC
Q 009672 329 KCLELSDTQ-VGSSGLR-HLSGLTNLESINLSF 359 (529)
Q Consensus 329 ~~L~l~~~~-~~~~~~~-~~~~~~~L~~L~l~~ 359 (529)
+.+++.++. ++..... .-..+|+++...+..
T Consensus 429 eri~l~~~q~vtk~~i~~~~~~lp~i~v~a~~a 461 (483)
T KOG4341|consen 429 ERIELIDCQDVTKEAISRFATHLPNIKVHAYFA 461 (483)
T ss_pred ceeeeechhhhhhhhhHHHHhhCccceehhhcc
Confidence 999998874 3333332 334677777665443
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.3e-12 Score=111.51 Aligned_cols=264 Identities=22% Similarity=0.233 Sum_probs=148.9
Q ss_pred CCcHHHHHHHHHHhhhcccCChhhhh-hhccCccceeccCCCCCCCHHHHHHHHhcCCceeEEEecCcccCchhhhhccC
Q 009672 1 MLPRDISQQIFNELVYSRCLTEVSLE-AFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKD 79 (529)
Q Consensus 1 ~l~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~ 79 (529)
.||.|+...||.-+.+...+...... .|.+|. ..-+..+++|+.+..+.......+.+
T Consensus 100 slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~---------------------~de~lW~~lDl~~r~i~p~~l~~l~~ 158 (419)
T KOG2120|consen 100 SLPDEILLGIFSCLCKKELLKVSGVCKRFYRLA---------------------SDESLWQTLDLTGRNIHPDVLGRLLS 158 (419)
T ss_pred cCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcc---------------------ccccceeeeccCCCccChhHHHHHHh
Confidence 47889999999887776655433322 233332 22234555555554443222222100
Q ss_pred CCCCCeEeccCCcccCc-hhhhhccCC-CCCCEEEcCCCCccchhHHHHHhCCCCCCEEeccCccccccccccccCCCcC
Q 009672 80 CSNLQSLDFNFCIQISD-GGLEHLRGL-SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 157 (529)
Q Consensus 80 ~~~L~~L~l~~~~~~~~-~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 157 (529)
..+..+.+... ...+ ...+.+.-+ ..|++|+|+............+..|.+|+.|.+++...-......+++-.+|
T Consensus 159 -rgV~v~Rlar~-~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L 236 (419)
T KOG2120|consen 159 -RGVIVFRLARS-FMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNL 236 (419)
T ss_pred -CCeEEEEcchh-hhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccc
Confidence 01122222111 1111 111222211 2466666666553333344455566677777766653222223455666777
Q ss_pred cEEeccCCcccCcccccc-ccCCCCCCeEEccCCCCChhHHHHh-hccCccchhhhhhhhHHHhhhhhhhhcccCCccEE
Q 009672 158 ESLNIKWCNCITDSDMKP-LSGLTNLKSLQISCSKVTDSGIAYL-KGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLL 235 (529)
Q Consensus 158 ~~L~l~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 235 (529)
+.|+++.|+.++....+- +.+|+.|.+|+++++.+....+..+ ..+ -++|..|
T Consensus 237 ~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hi-------------------------se~l~~L 291 (419)
T KOG2120|consen 237 VRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHI-------------------------SETLTQL 291 (419)
T ss_pred eeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhh-------------------------chhhhhh
Confidence 777777777777555543 4578888888888887765544332 222 1678888
Q ss_pred EccCCC--C-CHHHHHHhhcCCCCCeEecCCCc-CChhhhHhhhcCCCccEEEccCCCCC-hHHHHhhcCCCCCCEEECC
Q 009672 236 NLEGCP--V-TAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFNEIT-DECLVHLKGLTNLESLNLD 310 (529)
Q Consensus 236 ~l~~~~--~-~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~ 310 (529)
+++|+. + ..........+++|..||+++|. ++......+.+++.|++|.++.|..- ....-.+...|.|.+|++.
T Consensus 292 NlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~ 371 (419)
T KOG2120|consen 292 NLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVF 371 (419)
T ss_pred hhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEec
Confidence 888873 2 22233334578999999998875 44445566778889999998876432 2222235678899999998
Q ss_pred CC
Q 009672 311 SC 312 (529)
Q Consensus 311 ~~ 312 (529)
++
T Consensus 372 g~ 373 (419)
T KOG2120|consen 372 GC 373 (419)
T ss_pred cc
Confidence 87
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.27 E-value=9.3e-13 Score=119.97 Aligned_cols=212 Identities=25% Similarity=0.273 Sum_probs=142.3
Q ss_pred hcCCCCCCEEECCCCCCChhhh-hhhcCCCCCCeEEcCCCccChhh--hhhccCCCCCCeEeccCCCCChhhhhh-hcCC
Q 009672 298 LKGLTNLESLNLDSCGIGDEGL-VNLTGLCNLKCLELSDTQVGSSG--LRHLSGLTNLESINLSFTGISDGSLRK-LAGL 373 (529)
Q Consensus 298 ~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~-l~~~ 373 (529)
-+++.+|+.+.+.++....... .....|++++.|+++.|-+.... ......+|+|+.|+++.|.+....... -..+
T Consensus 117 Qsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 117 QSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 4567889999998886654433 23456889999999988665432 344567889999999888654321111 1145
Q ss_pred CCCcEEECCCCCCCHHHHHHH-hcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhh-hhhccCCCCCCeE
Q 009672 374 SSLKSLNLDARQITDTGLAAL-TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG-VKHIKDLSSLTLL 451 (529)
Q Consensus 374 ~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~~L~~L 451 (529)
++|+.|.++.|.++......+ ..+|+|+.|++.+|............+..|++|+|++|++.+.. ....+.+|.|..|
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence 788888898888886544433 47888888888888432222223345678888899888776543 2345677888888
Q ss_pred ecCCCCCCChhHH-H-----HHhCCCCCCeeeccCCccChh-HHHhccCCCCCcEEeecCccCChh
Q 009672 452 NLSQNCNLTDKTL-E-----LISGLTGLVSLNVSNSRITSA-GLRHLKPLKNLRSLTLESCKVTAN 510 (529)
Q Consensus 452 ~l~~~~~l~~~~~-~-----~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~ 510 (529)
+++.+ .+.+... + ....+++|+.|++..|++.+- ....+..+++|+.+.+-.|.++.+
T Consensus 277 nls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 277 NLSST-GIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred hcccc-CcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence 88888 6665532 1 234578888888888887442 224555667888888888877653
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.2e-11 Score=105.57 Aligned_cols=196 Identities=22% Similarity=0.245 Sum_probs=125.8
Q ss_pred CCCeEEcCCCccChhh-hhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCC-CCCHHHHH-HHhcCCCCCEE
Q 009672 327 NLKCLELSDTQVGSSG-LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR-QITDTGLA-ALTSLTGLTHL 403 (529)
Q Consensus 327 ~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~-~l~~~~~L~~L 403 (529)
.|+.++++...++... -..++.|..|+.+.+.++.+++.....++.-..|+.++++.+ .++..... .+.+|+.|.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 4666666665554433 233455666777777777776666666666667777777663 44443332 34577777777
Q ss_pred ecCCCCCChHHH-Hhh-hcCCCCcEEEccCC--CCChhhhhh-ccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeeec
Q 009672 404 DLFGARITDSGA-AYL-RNFKNLRSLEICGG--GLTDAGVKH-IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 478 (529)
Q Consensus 404 ~l~~~~l~~~~~-~~~-~~~~~L~~L~l~~~--~l~~~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l 478 (529)
+++-|.+..... ..+ .--+.|+.|+++|+ ++....... ...+|+|.+||+++|..++......+.+++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 777665443221 112 22357777888775 233333333 3568999999999998888888888899999999999
Q ss_pred cCCccChh-HHHhccCCCCCcEEeecCccCChhHHHHhhcCCCCCce
Q 009672 479 SNSRITSA-GLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLV 524 (529)
Q Consensus 479 ~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~l~ 524 (529)
+.|+.... ..-.+...|+|.+|++.+|-- .-..+.+. +++|+|+
T Consensus 346 sRCY~i~p~~~~~l~s~psl~yLdv~g~vs-dt~mel~~-e~~~~lk 390 (419)
T KOG2120|consen 346 SRCYDIIPETLLELNSKPSLVYLDVFGCVS-DTTMELLK-EMLSHLK 390 (419)
T ss_pred hhhcCCChHHeeeeccCcceEEEEeccccC-chHHHHHH-HhCcccc
Confidence 99975442 224567889999999999832 22344444 5667765
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.3e-11 Score=112.73 Aligned_cols=141 Identities=17% Similarity=0.053 Sum_probs=61.8
Q ss_pred HhcCCceeEEEecCcccCchhh-hh-ccCCCCCCeEeccCCcccCchhhhhccCCCCCCEEEcCCCCccchhHHHHHhCC
Q 009672 53 ASQGSSLLSVDLSGSDVTDSGL-IH-LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL 130 (529)
Q Consensus 53 ~~~~~~l~~l~l~~~~~~~~~~-~~-l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 130 (529)
...+++++.|||++|-+....+ .. ..++|+|+.|+++.|..........-..+++|+.|.+++|..-..........|
T Consensus 142 ~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~f 221 (505)
T KOG3207|consen 142 SKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTF 221 (505)
T ss_pred hhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhC
Confidence 3445555555555554431111 11 245555555555554211111111112344555555555553222233333455
Q ss_pred CCCCEEeccCccccccccccccCCCcCcEEeccCCcccCccccccccCCCCCCeEEccCCCCC
Q 009672 131 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193 (529)
Q Consensus 131 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 193 (529)
|+|+.|.++.|...........-+..|++|++++++.+........+.++.|+.|+++.++++
T Consensus 222 Psl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~ 284 (505)
T KOG3207|consen 222 PSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIA 284 (505)
T ss_pred CcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcc
Confidence 555555555543221122222334455555555544444333344445555555555555444
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.14 E-value=8.3e-13 Score=104.78 Aligned_cols=159 Identities=18% Similarity=0.172 Sum_probs=91.4
Q ss_pred CCCCCCeEeccCCcccCchhhhhccCCCCCCEEEcCCCCccchhHHHHHhCCCCCCEEeccCccccccccccccCCCcCc
Q 009672 79 DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158 (529)
Q Consensus 79 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 158 (529)
++.++.+|.+++| ++... +..+..+.+|+.|+++.|+. ..+|..++.+++|++|++.-+ .+...+..|+.+|.|+
T Consensus 31 ~~s~ITrLtLSHN-Kl~~v-ppnia~l~nlevln~~nnqi--e~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~le 105 (264)
T KOG0617|consen 31 NMSNITRLTLSHN-KLTVV-PPNIAELKNLEVLNLSNNQI--EELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALE 105 (264)
T ss_pred chhhhhhhhcccC-ceeec-CCcHHHhhhhhhhhcccchh--hhcChhhhhchhhhheecchh-hhhcCccccCCCchhh
Confidence 4445555666655 33322 44555666666666666653 445666666666666666543 3445555666666666
Q ss_pred EEeccCCcccCccccccccCCCCCCeEEccCCCCChhHHHHhhccCccchhhhhhhhHHHhhhhhhhhcccCCccEEEcc
Q 009672 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLE 238 (529)
Q Consensus 159 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 238 (529)
+||+.+++--....+..|..+..|+-|.+++|.+.- +|..++.+++|+.|.+.
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe~---------------------------lp~dvg~lt~lqil~lr 158 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEI---------------------------LPPDVGKLTNLQILSLR 158 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCccc---------------------------CChhhhhhcceeEEeec
Confidence 666666444444455556666666666666665432 11223344677777776
Q ss_pred CCCCCHHHHHHhhcCCCCCeEecCCCcCChhh
Q 009672 239 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 270 (529)
Q Consensus 239 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 270 (529)
.+.+.+ .|..++.+.+|+.|.+.+|+++..+
T Consensus 159 dndll~-lpkeig~lt~lrelhiqgnrl~vlp 189 (264)
T KOG0617|consen 159 DNDLLS-LPKEIGDLTRLRELHIQGNRLTVLP 189 (264)
T ss_pred cCchhh-CcHHHHHHHHHHHHhcccceeeecC
Confidence 666554 3455666667777777777665433
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.2e-13 Score=106.44 Aligned_cols=159 Identities=24% Similarity=0.309 Sum_probs=93.7
Q ss_pred CCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEE
Q 009672 324 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 403 (529)
Q Consensus 324 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 403 (529)
.+...+.|.+++|.++... ..++.+.+|+.|++++|.+.+ .+..++.+++|+.|++.-|.+... +.+|+.+|.|+.|
T Consensus 31 ~~s~ITrLtLSHNKl~~vp-pnia~l~nlevln~~nnqie~-lp~~issl~klr~lnvgmnrl~~l-prgfgs~p~levl 107 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVP-PNIAELKNLEVLNLSNNQIEE-LPTSISSLPKLRILNVGMNRLNIL-PRGFGSFPALEVL 107 (264)
T ss_pred chhhhhhhhcccCceeecC-CcHHHhhhhhhhhcccchhhh-cChhhhhchhhhheecchhhhhcC-ccccCCCchhhhh
Confidence 3455566666776665443 334566667777777666655 334556666667666666665544 5566666666666
Q ss_pred ecCCCCCCh-HHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCc
Q 009672 404 DLFGARITD-SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 482 (529)
Q Consensus 404 ~l~~~~l~~-~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 482 (529)
++.+|.+.. ..|.-|..+..|+-|+++.|.+.-. +..++++++|+.|.+.+| .+.. .|..++.+++|++|.+.+|.
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe~l-p~dvg~lt~lqil~lrdn-dll~-lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEIL-PPDVGKLTNLQILSLRDN-DLLS-LPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCcccC-ChhhhhhcceeEEeeccC-chhh-CcHHHHHHHHHHHHhcccce
Confidence 666665543 2233344455666666666665432 445666666666666666 3333 45556666666666666666
Q ss_pred cChhHH
Q 009672 483 ITSAGL 488 (529)
Q Consensus 483 ~~~~~~ 488 (529)
++-..+
T Consensus 185 l~vlpp 190 (264)
T KOG0617|consen 185 LTVLPP 190 (264)
T ss_pred eeecCh
Confidence 654443
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=99.08 E-value=6.1e-11 Score=98.70 Aligned_cols=130 Identities=26% Similarity=0.317 Sum_probs=48.4
Q ss_pred cCCCCCcEEECCCCCCCHHHHHHHh-cCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCC
Q 009672 371 AGLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 449 (529)
Q Consensus 371 ~~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~ 449 (529)
.++.++++|++.++.++.. ..++ .+.+|+.|++++|.++... .+..++.|++|++++|.++.........+|+|+
T Consensus 16 ~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKLE--GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQ 91 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S--T--T----TT--EEE--SS---S-CHHHHHH-TT--
T ss_pred ccccccccccccccccccc--cchhhhhcCCCEEECCCCCCcccc--CccChhhhhhcccCCCCCCccccchHHhCCcCC
Confidence 3556788888888888773 3454 5678888888888887753 456678888888888888776432223578888
Q ss_pred eEecCCCCCCChhH-HHHHhCCCCCCeeeccCCccChhHH---HhccCCCCCcEEeecCc
Q 009672 450 LLNLSQNCNLTDKT-LELISGLTGLVSLNVSNSRITSAGL---RHLKPLKNLRSLTLESC 505 (529)
Q Consensus 450 ~L~l~~~~~l~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~~ 505 (529)
+|++++| .+.+.. ...+..+++|+.|++.+|++..... ..+..+|+|+.||-..-
T Consensus 92 ~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 92 ELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred EEECcCC-cCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence 8888888 555432 2456678888888888888764322 34566788888775543
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.2e-11 Score=99.68 Aligned_cols=129 Identities=29% Similarity=0.378 Sum_probs=49.9
Q ss_pred cCCCCCCeEeccCCCCChhhhhhhc-CCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCc
Q 009672 347 SGLTNLESINLSFTGISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 425 (529)
Q Consensus 347 ~~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~ 425 (529)
.++..+++|++.++.++.+ ..++ .+.+|+.|++++|.+... ..+..++.|+.|++++|.++.........+++|+
T Consensus 16 ~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQ 91 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--
T ss_pred ccccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCC
Confidence 3445688888888888763 3454 467888999999888873 4677788889999999888876543335688899
Q ss_pred EEEccCCCCChhh-hhhccCCCCCCeEecCCCCCCChh---HHHHHhCCCCCCeeeccC
Q 009672 426 SLEICGGGLTDAG-VKHIKDLSSLTLLNLSQNCNLTDK---TLELISGLTGLVSLNVSN 480 (529)
Q Consensus 426 ~L~l~~~~l~~~~-~~~~~~~~~L~~L~l~~~~~l~~~---~~~~l~~l~~L~~L~l~~ 480 (529)
+|++++|.+.+.. ...+..+++|+.|++.+|| ++.. -...+..+|+|+.||-..
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCEE
Confidence 9999888876643 2456678889999999885 3322 233566788888887543
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.03 E-value=7.4e-11 Score=102.48 Aligned_cols=128 Identities=26% Similarity=0.330 Sum_probs=74.1
Q ss_pred CCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEec
Q 009672 374 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 453 (529)
Q Consensus 374 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l 453 (529)
+.|+++++++|.++.. ...+.-.|.++.|+++.|.+..... ++.+++|+.|++++|.++...... ..+.++++|.+
T Consensus 284 q~LtelDLS~N~I~~i-DESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~~Gwh-~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNLITQI-DESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAECVGWH-LKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccchhhh-hhhhhhccceeEEeccccceeeehh--hhhcccceEeecccchhHhhhhhH-hhhcCEeeeeh
Confidence 4566666666666554 3444555666666666666665443 445666666666666665442221 23456666666
Q ss_pred CCCCCCChhHHHHHhCCCCCCeeeccCCccChhHH-HhccCCCCCcEEeecCccCC
Q 009672 454 SQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL-RHLKPLKNLRSLTLESCKVT 508 (529)
Q Consensus 454 ~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~ 508 (529)
++| .+.+ ..+++.+-+|..|++++|++..... .+++++|+|+.+.+.+|++.
T Consensus 360 a~N-~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 360 AQN-KIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hhh-hHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 666 3333 3445555666666666666654333 45566666666666666554
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.6e-10 Score=120.57 Aligned_cols=129 Identities=21% Similarity=0.192 Sum_probs=83.4
Q ss_pred ceeEEEecCcccCchhhhhccCCCCCCeEeccCCcc-cCchhhhhccCCCCCCEEEcCCCCccchhHHHHHhCCCCCCEE
Q 009672 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQ-ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136 (529)
Q Consensus 58 ~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 136 (529)
.+|++.+.++.+... ..-..++.|++|-+.++.. +.....+.|..++.|++|||++|.. -..+|..++.+-+||+|
T Consensus 524 ~~rr~s~~~~~~~~~--~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~-l~~LP~~I~~Li~LryL 600 (889)
T KOG4658|consen 524 SVRRMSLMNNKIEHI--AGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSS-LSKLPSSIGELVHLRYL 600 (889)
T ss_pred heeEEEEeccchhhc--cCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCc-cCcCChHHhhhhhhhcc
Confidence 466676666655321 1113555777777776642 4444455577788888888887663 34677788888888888
Q ss_pred eccCccccccccccccCCCcCcEEeccCCcccCccccccccCCCCCCeEEccCCC
Q 009672 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191 (529)
Q Consensus 137 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 191 (529)
+++.+ .+...|..++++..|.+|++..+...... +.....+.+|++|.+....
T Consensus 601 ~L~~t-~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 601 DLSDT-GISHLPSGLGNLKKLIYLNLEVTGRLESI-PGILLELQSLRVLRLPRSA 653 (889)
T ss_pred cccCC-CccccchHHHHHHhhheeccccccccccc-cchhhhcccccEEEeeccc
Confidence 88775 45566677777788888887765444432 3444457788888876543
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.2e-09 Score=93.79 Aligned_cols=245 Identities=18% Similarity=0.201 Sum_probs=123.6
Q ss_pred HHhhcCCCCCeEecCCCcCChhhhHhhh----cCCCccEEEccCC---CCChHHHHhhcCCCCCCEEECCCCCCChhhhh
Q 009672 248 DSLSALGSLFYLNLNRCQLSDDGCEKFS----KIGSLKVLNLGFN---EITDECLVHLKGLTNLESLNLDSCGIGDEGLV 320 (529)
Q Consensus 248 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~----~~~~L~~L~l~~~---~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 320 (529)
+.+.-+..+..+++++|.+......+++ +..+|+..+++.- ...+..+..+ .....
T Consensus 24 eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L-----------------~~Ll~ 86 (388)
T COG5238 24 EELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNL-----------------VMLLK 86 (388)
T ss_pred HHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHH-----------------HHHHH
Confidence 3344466777777777777665544443 3345555555431 1111111111 01122
Q ss_pred hhcCCCCCCeEEcCCCccChhhh----hhccCCCCCCeEeccCCCCChhhhhh-------------hcCCCCCcEEECCC
Q 009672 321 NLTGLCNLKCLELSDTQVGSSGL----RHLSGLTNLESINLSFTGISDGSLRK-------------LAGLSSLKSLNLDA 383 (529)
Q Consensus 321 ~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~-------------l~~~~~L~~L~l~~ 383 (529)
++..||+|+.+++++|.++...+ ..+++.+.|..|.+.+|++......- .++-+.|+.+.+..
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 33344445555554444433222 23334445555555555444322111 12345677777766
Q ss_pred CCCCHHHH----HHHhcCCCCCEEecCCCCCChHHHH-----hhhcCCCCcEEEccCCCCChhhhhhcc----CCCCCCe
Q 009672 384 RQITDTGL----AALTSLTGLTHLDLFGARITDSGAA-----YLRNFKNLRSLEICGGGLTDAGVKHIK----DLSSLTL 450 (529)
Q Consensus 384 ~~~~~~~~----~~l~~~~~L~~L~l~~~~l~~~~~~-----~~~~~~~L~~L~l~~~~l~~~~~~~~~----~~~~L~~ 450 (529)
|.+...+. ..+..-.+|+.+.+..|.|...+.. .++.+.+|+.|++..|.++..+..+++ ..+.|++
T Consensus 167 NRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrE 246 (388)
T COG5238 167 NRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRE 246 (388)
T ss_pred chhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhh
Confidence 66644222 1222334677777777766544322 225667777777777777666554443 2355677
Q ss_pred EecCCCCCCChhHHH----HHh--CCCCCCeeeccCCccChhH-----HHhc--cCCCCCcEEeecCccCChh
Q 009672 451 LNLSQNCNLTDKTLE----LIS--GLTGLVSLNVSNSRITSAG-----LRHL--KPLKNLRSLTLESCKVTAN 510 (529)
Q Consensus 451 L~l~~~~~l~~~~~~----~l~--~l~~L~~L~l~~~~~~~~~-----~~~~--~~~~~L~~L~l~~~~~~~~ 510 (529)
|.+.+| -++..... .+. ..|+|..|-...|...+.. ...+ ..+|-|..+.+.+|++.+.
T Consensus 247 L~lnDC-lls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E~ 318 (388)
T COG5238 247 LRLNDC-LLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKEL 318 (388)
T ss_pred ccccch-hhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchhH
Confidence 777777 44433222 222 2567777777766543211 1222 4567777777788877654
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.87 E-value=5.8e-10 Score=97.04 Aligned_cols=131 Identities=21% Similarity=0.309 Sum_probs=94.8
Q ss_pred CCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEE
Q 009672 349 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 428 (529)
Q Consensus 349 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ 428 (529)
...|+++++++|.++.+ ..++.-.|.++.|+++.|.+... +.++.+++|+.|++++|.++... .+-.++-+.++|.
T Consensus 283 Wq~LtelDLS~N~I~~i-DESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~~-Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQI-DESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAECV-GWHLKLGNIKTLK 358 (490)
T ss_pred Hhhhhhccccccchhhh-hhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhhh-hhHhhhcCEeeee
Confidence 35678888888877653 33455567888888888888763 44777888888888888776643 3345677888888
Q ss_pred ccCCCCChhhhhhccCCCCCCeEecCCCCCCChh-HHHHHhCCCCCCeeeccCCccChh
Q 009672 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK-TLELISGLTGLVSLNVSNSRITSA 486 (529)
Q Consensus 429 l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~l~~l~~L~~L~l~~~~~~~~ 486 (529)
+++|.+.+. ..+..+-+|..||+++| ++... -...++++|+|+.+.+.+|++.+.
T Consensus 359 La~N~iE~L--SGL~KLYSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 359 LAQNKIETL--SGLRKLYSLVNLDLSSN-QIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred hhhhhHhhh--hhhHhhhhheecccccc-chhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 888877543 34566778888888888 66554 245677888999999998887753
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1e-08 Score=88.11 Aligned_cols=243 Identities=16% Similarity=0.170 Sum_probs=132.8
Q ss_pred ccCCCCCCeEEccCCCCChhHHHHhhccCccchhhhhhhhHHHhhhhhhhhcccCCccEEEccCCC---CCHHHH-----
Q 009672 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCP---VTAACL----- 247 (529)
Q Consensus 176 l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~---~~~~~~----- 247 (529)
+..+..+.++++++|.|.......+... +.+-.+|+..+++.-. ..+..+
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~----------------------ia~~~~L~vvnfsd~ftgr~kde~~~~L~~ 83 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNV----------------------IANVRNLRVVNFSDAFTGRDKDELYSNLVM 83 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHH----------------------HhhhcceeEeehhhhhhcccHHHHHHHHHH
Confidence 3446677777777777766655555443 3333566666665431 122222
Q ss_pred --HHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEECCCCCCChhhh------
Q 009672 248 --DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL------ 319 (529)
Q Consensus 248 --~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~------ 319 (529)
.++..||+|+.++++.|.+....++. ....+++.+.|.+|.+.+|++..+..
T Consensus 84 Ll~aLlkcp~l~~v~LSDNAfg~~~~e~--------------------L~d~is~~t~l~HL~l~NnGlGp~aG~rigka 143 (388)
T COG5238 84 LLKALLKCPRLQKVDLSDNAFGSEFPEE--------------------LGDLISSSTDLVHLKLNNNGLGPIAGGRIGKA 143 (388)
T ss_pred HHHHHhcCCcceeeeccccccCcccchH--------------------HHHHHhcCCCceeEEeecCCCCccchhHHHHH
Confidence 23345556666666655544332221 12234444555555555554432211
Q ss_pred -------hhhcCCCCCCeEEcCCCccChhhh----hhccCCCCCCeEeccCCCCChhhhh-----hhcCCCCCcEEECCC
Q 009672 320 -------VNLTGLCNLKCLELSDTQVGSSGL----RHLSGLTNLESINLSFTGISDGSLR-----KLAGLSSLKSLNLDA 383 (529)
Q Consensus 320 -------~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~-----~l~~~~~L~~L~l~~ 383 (529)
...+.-|.|+++....|++..-.. ..+....+|+.+.+..|+|...+.. .+..+.+|+.|++++
T Consensus 144 l~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqD 223 (388)
T COG5238 144 LFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQD 223 (388)
T ss_pred HHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccc
Confidence 122334677777777776543222 2223335778888888877654332 233678888888888
Q ss_pred CCCCHHHHHHH----hcCCCCCEEecCCCCCChHHHHhh------hcCCCCcEEEccCCCCChhhh-----hhc--cCCC
Q 009672 384 RQITDTGLAAL----TSLTGLTHLDLFGARITDSGAAYL------RNFKNLRSLEICGGGLTDAGV-----KHI--KDLS 446 (529)
Q Consensus 384 ~~~~~~~~~~l----~~~~~L~~L~l~~~~l~~~~~~~~------~~~~~L~~L~l~~~~l~~~~~-----~~~--~~~~ 446 (529)
|.++..+...+ ...+.|+.|.+..|-+...+...+ ...|+|+.|...+|....... ..+ ..+|
T Consensus 224 Ntft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p 303 (388)
T COG5238 224 NTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVP 303 (388)
T ss_pred cchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccH
Confidence 88876544333 355678888888887766554332 345777777777765432211 111 2345
Q ss_pred CCCeEecCCCCCCCh
Q 009672 447 SLTLLNLSQNCNLTD 461 (529)
Q Consensus 447 ~L~~L~l~~~~~l~~ 461 (529)
-|..|.+.|| .+..
T Consensus 304 ~L~~le~ngN-r~~E 317 (388)
T COG5238 304 LLVDLERNGN-RIKE 317 (388)
T ss_pred HHHHHHHccC-cchh
Confidence 5666666665 4443
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.70 E-value=8.8e-09 Score=107.83 Aligned_cols=271 Identities=23% Similarity=0.205 Sum_probs=134.8
Q ss_pred CCccEEEccCCC--CCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEE
Q 009672 230 QKLTLLNLEGCP--VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 307 (529)
Q Consensus 230 ~~L~~L~l~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 307 (529)
++|+.|-+.++. +.....+.|..++.|+.|++++|.-....|..++.+-+|+.|+++++.+. ..|..+..+.+|.+|
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL 623 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence 567777666664 44444455667777777887776655566677777777777777777766 466667777777777
Q ss_pred ECCCCCCChhhhhhhcCCCCCCeEEcCCCc--cChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCC----cEEEC
Q 009672 308 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQ--VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL----KSLNL 381 (529)
Q Consensus 308 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L----~~L~l 381 (529)
++..+......+.....+++|++|.+.... .+......+..+.+|+.+.+..... .....+.....| +.+.+
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~~ 701 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQSLSI 701 (889)
T ss_pred ccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhHhhhh
Confidence 777664332233444457777777775543 1112222233444444444432221 011111111111 12222
Q ss_pred CCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhh-----hc-CCCCcEEEccCCCCChhhhhhccCCCCCCeEecCC
Q 009672 382 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL-----RN-FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 455 (529)
Q Consensus 382 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~-----~~-~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~ 455 (529)
.++.... ....+..+.+|+.|.+.+|.+........ .. ++++..+.+.++........ ..-.|+|+.|.+..
T Consensus 702 ~~~~~~~-~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~-~~f~~~L~~l~l~~ 779 (889)
T KOG4658|consen 702 EGCSKRT-LISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTW-LLFAPHLTSLSLVS 779 (889)
T ss_pred cccccce-eecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccch-hhccCcccEEEEec
Confidence 2221111 13344566677777777776654322111 11 22333333333322111111 11236777888877
Q ss_pred CCCCChhHHHHHhCCCCCCeeeccCCccChh-HHHhccCCCCCcEEeecCcc
Q 009672 456 NCNLTDKTLELISGLTGLVSLNVSNSRITSA-GLRHLKPLKNLRSLTLESCK 506 (529)
Q Consensus 456 ~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~ 506 (529)
|+.+.+..+. ...+..++.+.+..+.+.+. .....+.++++..+.+..-.
T Consensus 780 ~~~~e~~i~~-~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~ 830 (889)
T KOG4658|consen 780 CRLLEDIIPK-LKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLK 830 (889)
T ss_pred ccccccCCCH-HHHhhhcccEEecccccccceeeecCCCCceeEecccCccc
Confidence 7555554332 23344455455555544443 23334445555555544443
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.8e-09 Score=71.61 Aligned_cols=59 Identities=36% Similarity=0.441 Sum_probs=34.0
Q ss_pred CCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccChhHHHhccCCCCCcEEeecCcc
Q 009672 447 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 506 (529)
Q Consensus 447 ~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 506 (529)
+|++|++++| .++...+..|.++++|+.|++++|.+....+..|..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4555555555 5555544555555566666666555555555555666666666666654
|
... |
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.59 E-value=5.6e-08 Score=66.32 Aligned_cols=60 Identities=27% Similarity=0.351 Sum_probs=51.0
Q ss_pred CceeEEEecCcccCchhhhhccCCCCCCeEeccCCcccCchhhhhccCCCCCCEEEcCCCC
Q 009672 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117 (529)
Q Consensus 57 ~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 117 (529)
|+|++|++++|.++......|+.+++|++|++++| .+....+..|..+++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence 56888999999888887788888899999999977 6788878888888899999988875
|
... |
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.2e-07 Score=97.23 Aligned_cols=105 Identities=19% Similarity=0.253 Sum_probs=53.3
Q ss_pred CCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeeecc
Q 009672 400 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 479 (529)
Q Consensus 400 L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~ 479 (529)
++.|++.+|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++| .++..+|..++.+++|+.|+++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N-~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYN-SFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCC-CCCCCCchHHhcCCCCCEEECc
Confidence 444555555555444444555555555555555555444444555555555555555 4554455555555555555555
Q ss_pred CCccChhHHHhccC-CCCCcEEeecCc
Q 009672 480 NSRITSAGLRHLKP-LKNLRSLTLESC 505 (529)
Q Consensus 480 ~~~~~~~~~~~~~~-~~~L~~L~l~~~ 505 (529)
+|.+.+..+..+.. ..++..+++.+|
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCC
Confidence 55555444444332 123445555544
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.6e-07 Score=91.89 Aligned_cols=197 Identities=35% Similarity=0.456 Sum_probs=111.1
Q ss_pred EEEccCCCCChHHHHhhcCCCCCCEEECCCCCCChhhhhhhcCCC-CCCeEEcCCCccChhhhhhccCCCCCCeEeccCC
Q 009672 282 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC-NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 360 (529)
Q Consensus 282 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 360 (529)
.+....+.+.. ....+...+.++.+.+.++.+.++.+ .....+ +|+.|++++|.+.... ..++.+++|+.|+++.|
T Consensus 97 ~l~~~~~~~~~-~~~~~~~~~~l~~L~l~~n~i~~i~~-~~~~~~~nL~~L~l~~N~i~~l~-~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRS-NISELLELTNLTSLDLDNNNITDIPP-LIGLLKSNLKELDLSDNKIESLP-SPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeecccccccc-CchhhhcccceeEEecCCcccccCcc-ccccchhhcccccccccchhhhh-hhhhccccccccccCCc
Confidence 45555555421 12223444677777777776655332 223332 6777777777665432 23456677777777777
Q ss_pred CCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhh
Q 009672 361 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 440 (529)
Q Consensus 361 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~ 440 (529)
.+.+.... ....+.|+.|++++|.+..... .......|+++.+++|.+... +..+.++..+..+.+.+|++... +.
T Consensus 174 ~l~~l~~~-~~~~~~L~~L~ls~N~i~~l~~-~~~~~~~L~~l~~~~N~~~~~-~~~~~~~~~l~~l~l~~n~~~~~-~~ 249 (394)
T COG4886 174 DLSDLPKL-LSNLSNLNNLDLSGNKISDLPP-EIELLSALEELDLSNNSIIEL-LSSLSNLKNLSGLELSNNKLEDL-PE 249 (394)
T ss_pred hhhhhhhh-hhhhhhhhheeccCCccccCch-hhhhhhhhhhhhhcCCcceec-chhhhhcccccccccCCceeeec-cc
Confidence 66654332 2245667777777777766522 223334566777766643222 22345556666666666665542 33
Q ss_pred hccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccChhHH
Q 009672 441 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488 (529)
Q Consensus 441 ~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 488 (529)
.++.++++++|++++| .+++... +..+.+++.|+++++.+....+
T Consensus 250 ~~~~l~~l~~L~~s~n-~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 250 SIGNLSNLETLDLSNN-QISSISS--LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred hhccccccceeccccc-ccccccc--ccccCccCEEeccCccccccch
Confidence 4555566777777776 5555433 5566677777777766655444
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.49 E-value=4.2e-09 Score=102.54 Aligned_cols=127 Identities=25% Similarity=0.285 Sum_probs=67.0
Q ss_pred CcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCC
Q 009672 376 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 455 (529)
Q Consensus 376 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~ 455 (529)
|...++++|.+... ...+.-++.|+.|+++.|++++.. .+..|+.|++|||++|.+....-..-.++. |+.|.+.+
T Consensus 166 L~~a~fsyN~L~~m-D~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrn 241 (1096)
T KOG1859|consen 166 LATASFSYNRLVLM-DESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRN 241 (1096)
T ss_pred HhhhhcchhhHHhH-HHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecc
Confidence 45555555555443 234444556666666666665543 445566666666666665543222222233 66666666
Q ss_pred CCCCChhHHHHHhCCCCCCeeeccCCccChhHH-HhccCCCCCcEEeecCccCCh
Q 009672 456 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGL-RHLKPLKNLRSLTLESCKVTA 509 (529)
Q Consensus 456 ~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~ 509 (529)
| .++. ..++.++.+|+.||++.|-+.+-.. .-+..+..|+.|++.||++-.
T Consensus 242 N-~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 242 N-ALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred c-HHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 6 4443 2345556666666666664443221 223445556666666665543
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.8e-07 Score=93.22 Aligned_cols=35 Identities=23% Similarity=0.283 Sum_probs=20.6
Q ss_pred CCCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCC
Q 009672 300 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 335 (529)
Q Consensus 300 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 335 (529)
..-++.++++.+..........+.... |+++.+..
T Consensus 58 ~~f~ltki~l~~~~~~~~~~~~l~~~~-L~sl~LGn 92 (699)
T KOG3665|consen 58 RKFNLTKIDLKNVTLQHQTLEMLRKQD-LESLKLGN 92 (699)
T ss_pred hhheeEEeeccceecchhHHHHHhhcc-ccccCCcc
Confidence 344677777777655544444444444 77777665
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.9e-07 Score=91.39 Aligned_cols=200 Identities=30% Similarity=0.374 Sum_probs=148.0
Q ss_pred CeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCC-CCCEEECCCCCCChhhhhhhcCCCCCCeEEcCC
Q 009672 257 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT-NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 335 (529)
Q Consensus 257 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 335 (529)
..+....+.+... ...+...+.+..+++.++.+.. .+....... +|+.|++.++.+... +..+..++.|+.|+++.
T Consensus 96 ~~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~~l-~~~~~~l~~L~~L~l~~ 172 (394)
T COG4886 96 PSLDLNLNRLRSN-ISELLELTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIESL-PSPLRNLPNLKNLDLSF 172 (394)
T ss_pred ceeeccccccccC-chhhhcccceeEEecCCccccc-Cccccccchhhcccccccccchhhh-hhhhhccccccccccCC
Confidence 3577777766332 2344456789999999998874 344444553 899999999987653 24567899999999999
Q ss_pred CccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHH
Q 009672 336 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 415 (529)
Q Consensus 336 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~ 415 (529)
|.+...... ....++|+.+++++|.+.+.... ......|+++.+.+|..... +..+..+.++..+.+.++++... +
T Consensus 173 N~l~~l~~~-~~~~~~L~~L~ls~N~i~~l~~~-~~~~~~L~~l~~~~N~~~~~-~~~~~~~~~l~~l~l~~n~~~~~-~ 248 (394)
T COG4886 173 NDLSDLPKL-LSNLSNLNNLDLSGNKISDLPPE-IELLSALEELDLSNNSIIEL-LSSLSNLKNLSGLELSNNKLEDL-P 248 (394)
T ss_pred chhhhhhhh-hhhhhhhhheeccCCccccCchh-hhhhhhhhhhhhcCCcceec-chhhhhcccccccccCCceeeec-c
Confidence 998766432 23678999999999998875543 23345699999999854332 55677888888888888887764 4
Q ss_pred HhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHH
Q 009672 416 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 466 (529)
Q Consensus 416 ~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 466 (529)
..+..+++++.|++++|.++.... ++...+++.|+++++ .+....+..
T Consensus 249 ~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n-~~~~~~~~~ 296 (394)
T COG4886 249 ESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGN-SLSNALPLI 296 (394)
T ss_pred chhccccccceecccccccccccc--ccccCccCEEeccCc-cccccchhh
Confidence 466788899999999999988644 778899999999999 566554443
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.1e-07 Score=81.41 Aligned_cols=206 Identities=24% Similarity=0.252 Sum_probs=109.4
Q ss_pred CCCCCEEECCCCCCChh--hhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhh-hhhhcCCCCCc
Q 009672 301 LTNLESLNLDSCGIGDE--GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS-LRKLAGLSSLK 377 (529)
Q Consensus 301 ~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~ 377 (529)
++.++.+++.+|.+++. ....+.++|.|+.|+++.|.+.......-....+|+.+.+.+..+.-.. ...+..+|.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 44455555555544321 1122334555555555555443332111122335555555554443211 12233445555
Q ss_pred EEECCCCCCCHHHH--HHHh-cCCCCCEEecCCCCCChHH--HHhhhcCCCCcEEEccCCCCChhhh-hhccCCCCCCeE
Q 009672 378 SLNLDARQITDTGL--AALT-SLTGLTHLDLFGARITDSG--AAYLRNFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLL 451 (529)
Q Consensus 378 ~L~l~~~~~~~~~~--~~l~-~~~~L~~L~l~~~~l~~~~--~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~L~~L 451 (529)
+|+++.|.+..... .... --+.+++++...|...... .....-+|++..+.+..|++..... .....+|.+.-|
T Consensus 150 elHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~L 229 (418)
T KOG2982|consen 150 ELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCL 229 (418)
T ss_pred hhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhh
Confidence 55555553221100 0000 1124555555555322211 1112446888889999888866543 355667888889
Q ss_pred ecCCCCCCChh-HHHHHhCCCCCCeeeccCCccChhHHHh------ccCCCCCcEEeecCccCCh
Q 009672 452 NLSQNCNLTDK-TLELISGLTGLVSLNVSNSRITSAGLRH------LKPLKNLRSLTLESCKVTA 509 (529)
Q Consensus 452 ~l~~~~~l~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~------~~~~~~L~~L~l~~~~~~~ 509 (529)
+++.+ ++.+. ..+++.+++.|..|.++++++.+....+ +..+++++.|+=+ ++++
T Consensus 230 nL~~~-~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs--kIss 291 (418)
T KOG2982|consen 230 NLGAN-NIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS--KISS 291 (418)
T ss_pred hhccc-ccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc--ccch
Confidence 99998 66554 5678889999999999999988754422 2556777766543 5543
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=4.7e-07 Score=92.92 Aligned_cols=106 Identities=22% Similarity=0.333 Sum_probs=65.4
Q ss_pred CcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCC
Q 009672 376 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 455 (529)
Q Consensus 376 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~ 455 (529)
++.|++.++.+....+..++.+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+.++++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 55566666666555555566666666666666666655555566666666666666666665566666666666666666
Q ss_pred CCCCChhHHHHHhC-CCCCCeeeccCCc
Q 009672 456 NCNLTDKTLELISG-LTGLVSLNVSNSR 482 (529)
Q Consensus 456 ~~~l~~~~~~~l~~-l~~L~~L~l~~~~ 482 (529)
| .++..+|..+.. ..++..+++.+|+
T Consensus 500 N-~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 N-SLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred C-cccccCChHHhhccccCceEEecCCc
Confidence 6 555555555543 2345566666654
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.3e-08 Score=96.60 Aligned_cols=192 Identities=18% Similarity=0.094 Sum_probs=136.1
Q ss_pred ceeEEEecCcccCchhhhhccCCCCCCeEeccCCcccCchhhhhccCCCCCCEEEcCCCCccchhHHHHHhCCCCCCEEe
Q 009672 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD 137 (529)
Q Consensus 58 ~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 137 (529)
.....||+.|.+. +.+..+..|..|+.+.+..| .+..+ +..+..+..|.+|+|+.|+. ..+|..++.|+ |+.|.
T Consensus 76 dt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n-~~r~i-p~~i~~L~~lt~l~ls~Nql--S~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 76 DTVFADLSRNRFS-ELPEEACAFVSLESLILYHN-CIRTI-PEAICNLEALTFLDLSSNQL--SHLPDGLCDLP-LKVLI 149 (722)
T ss_pred chhhhhccccccc-cCchHHHHHHHHHHHHHHhc-cceec-chhhhhhhHHHHhhhccchh--hcCChhhhcCc-ceeEE
Confidence 3556777887776 56666777888888888766 34443 67788889999999999884 56777776655 78888
Q ss_pred ccCccccccccccccCCCcCcEEeccCCcccCccccccccCCCCCCeEEccCCCCChhHHHHhhccCccchhhhhhhhHH
Q 009672 138 LERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMII 217 (529)
Q Consensus 138 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 217 (529)
+++| .....+..++..+.|..|+.+.|+..+ .+..++.+.+|+.|++..|.+...... +..
T Consensus 150 ~sNN-kl~~lp~~ig~~~tl~~ld~s~nei~s--lpsql~~l~slr~l~vrRn~l~~lp~E-l~~--------------- 210 (722)
T KOG0532|consen 150 VSNN-KLTSLPEEIGLLPTLAHLDVSKNEIQS--LPSQLGYLTSLRDLNVRRNHLEDLPEE-LCS--------------- 210 (722)
T ss_pred EecC-ccccCCcccccchhHHHhhhhhhhhhh--chHHhhhHHHHHHHHHhhhhhhhCCHH-HhC---------------
Confidence 8886 566677777777889999988855443 556778888888888888776553222 222
Q ss_pred HhhhhhhhhcccCCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcC---CCccEEEccCC
Q 009672 218 RLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI---GSLKVLNLGFN 288 (529)
Q Consensus 218 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~---~~L~~L~l~~~ 288 (529)
-.|..||++.|++.. +|..|..++.|++|.|.+|.+.. +|..++.. .--++|++..+
T Consensus 211 ------------LpLi~lDfScNkis~-iPv~fr~m~~Lq~l~LenNPLqS-PPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 211 ------------LPLIRLDFSCNKISY-LPVDFRKMRHLQVLQLENNPLQS-PPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred ------------CceeeeecccCceee-cchhhhhhhhheeeeeccCCCCC-ChHHHHhccceeeeeeecchhc
Confidence 478889999988876 46678889999999999988765 33444322 22345555444
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=3.2e-07 Score=93.75 Aligned_cols=109 Identities=27% Similarity=0.269 Sum_probs=59.8
Q ss_pred cCccceeccCCCCCCCHHHHHHHHhcCCceeEEEecCcccCchhh-hhccCCCCCCeEeccCCcccCchhhhhccCCCCC
Q 009672 30 DCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGL-IHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNL 108 (529)
Q Consensus 30 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L 108 (529)
+.+++++++.+-..+...|+..+...+|.|++|.+++..+..... .....+|+|+.||++++ .++.. ..++++++|
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl--~GIS~LknL 197 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNL--SGISRLKNL 197 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCc--HHHhccccH
Confidence 344666666555555566666666666666666666655532222 22356666666666665 34442 455566666
Q ss_pred CEEEcCCCCccchhHHHHHhCCCCCCEEeccCc
Q 009672 109 TSLSFRRNNAITAQGMKAFAGLINLVKLDLERC 141 (529)
Q Consensus 109 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 141 (529)
+.|.+..-...+...-..+.++++|++|+++..
T Consensus 198 q~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 198 QVLSMRNLEFESYQDLIDLFNLKKLRVLDISRD 230 (699)
T ss_pred HHHhccCCCCCchhhHHHHhcccCCCeeecccc
Confidence 666665544333233344445666666666653
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.7e-07 Score=81.88 Aligned_cols=185 Identities=17% Similarity=0.173 Sum_probs=97.6
Q ss_pred CCCCCCeEEcCCCccChhh--hhhccCCCCCCeEeccCCCCChhhhhhh-cCCCCCcEEECCCCCCCHHHHH-HHhcCCC
Q 009672 324 GLCNLKCLELSDTQVGSSG--LRHLSGLTNLESINLSFTGISDGSLRKL-AGLSSLKSLNLDARQITDTGLA-ALTSLTG 399 (529)
Q Consensus 324 ~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~-~l~~~~~ 399 (529)
.++.++.+++.+|.++++. ...+..+|.|+.|+++.|.+.... ..+ ....+|+.|.+.+..+...... .+..+|.
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I-~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDI-KSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcc-ccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 3566777777777766543 234456777777777777665421 222 2345677777777655443222 3346666
Q ss_pred CCEEecCCCCCChHH--HHhh-hcCCCCcEEEccCCCCChhhhh-hc-cCCCCCCeEecCCCCCCChhHHHHHhCCCCCC
Q 009672 400 LTHLDLFGARITDSG--AAYL-RNFKNLRSLEICGGGLTDAGVK-HI-KDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 474 (529)
Q Consensus 400 L~~L~l~~~~l~~~~--~~~~-~~~~~L~~L~l~~~~l~~~~~~-~~-~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~ 474 (529)
+++++++.|.+.... .... ..-+.+++|+.-+|........ .+ .-+|++..+-+..||-=+...-.....+|.+-
T Consensus 148 vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~ 227 (418)
T KOG2982|consen 148 VTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLS 227 (418)
T ss_pred hhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcch
Confidence 666666666322110 0011 1112444454444433221111 11 12466666666666432333334555566677
Q ss_pred eeeccCCccCh-hHHHhccCCCCCcEEeecCccCCh
Q 009672 475 SLNVSNSRITS-AGLRHLKPLKNLRSLTLESCKVTA 509 (529)
Q Consensus 475 ~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~ 509 (529)
.|+++.+++.. ...+++..+++|.-|.++++++.+
T Consensus 228 ~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 228 CLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred hhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 77777776643 333566677777777777776543
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.8e-08 Score=96.34 Aligned_cols=218 Identities=28% Similarity=0.379 Sum_probs=88.1
Q ss_pred cCCCccEEEccCCCCChHHHHhhcCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeE
Q 009672 276 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 355 (529)
Q Consensus 276 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 355 (529)
.+.+|..+++..|.+.. ....+..+++|++|++++|.++.. ..+..++.|+.|++++|.+... ..+..+++|+.+
T Consensus 93 ~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l 167 (414)
T KOG0531|consen 93 KLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISDI--SGLESLKSLKLL 167 (414)
T ss_pred cccceeeeeccccchhh-cccchhhhhcchheeccccccccc--cchhhccchhhheeccCcchhc--cCCccchhhhcc
Confidence 34444444444444432 111133445555555555544332 1223334455555555544332 222334455555
Q ss_pred eccCCCCChhhh-hhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCC--CCcEEEccCC
Q 009672 356 NLSFTGISDGSL-RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK--NLRSLEICGG 432 (529)
Q Consensus 356 ~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~--~L~~L~l~~~ 432 (529)
++++|.+..... . ...+..++.+.+.+|.+... ..+..+..+..+++..|.++...+ +.... +|+.+++++|
T Consensus 168 ~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n 242 (414)
T KOG0531|consen 168 DLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGN 242 (414)
T ss_pred cCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccC
Confidence 555554444322 1 23444555555555544432 111111222222333433332211 00111 2555555555
Q ss_pred CCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccChhHH--Hh--ccCCCCCcEEeecCccC
Q 009672 433 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL--RH--LKPLKNLRSLTLESCKV 507 (529)
Q Consensus 433 ~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~~--~~~~~~L~~L~l~~~~~ 507 (529)
++.... ..+..++.+..+++.++ .+.. ...+...+.+..+....+++..... .. ....+.++.+.+.++.+
T Consensus 243 ~i~~~~-~~~~~~~~l~~l~~~~n-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (414)
T KOG0531|consen 243 RISRSP-EGLENLKNLPVLDLSSN-RISN--LEGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPI 317 (414)
T ss_pred cccccc-ccccccccccccchhhc-cccc--cccccccchHHHhccCcchhcchhhhhccccccccccccccccccCcc
Confidence 554431 22334455555555555 3332 1122333444455555554432111 11 23345555555555533
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.28 E-value=5.4e-08 Score=95.33 Aligned_cols=217 Identities=34% Similarity=0.369 Sum_probs=130.1
Q ss_pred CCCccEEEccCCCCChHHHHhhcCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEe
Q 009672 277 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 356 (529)
Q Consensus 277 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 356 (529)
+..++.+.+..+.+.. ....+..+.+|+.+++.++.+..+.. .+..+++|+.|++++|.++.. ..+..++.|+.|+
T Consensus 71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELN 146 (414)
T ss_pred hHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhccc-chhhhhcchheeccccccccc--cchhhccchhhhe
Confidence 3455555566655542 22235667788888888877654322 155677888888888877654 2344556677788
Q ss_pred ccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHH-HHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCC
Q 009672 357 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL-AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 435 (529)
Q Consensus 357 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~ 435 (529)
+++|.+.+. ..+..+..|+.+++++|.+..... . ...+.+++.+.+.+|.+...... ..+..+..+++..|.+.
T Consensus 147 l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~--~~~~~l~~~~l~~n~i~ 221 (414)
T KOG0531|consen 147 LSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEGL--DLLKKLVLLSLLDNKIS 221 (414)
T ss_pred eccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccch--HHHHHHHHhhcccccce
Confidence 888777653 234446777777777777776433 2 45667777777777766543221 12223333455555554
Q ss_pred hhhhhhccCCCC--CCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccChhHHHhccCCCCCcEEeecCccCC
Q 009672 436 DAGVKHIKDLSS--LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 508 (529)
Q Consensus 436 ~~~~~~~~~~~~--L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 508 (529)
.... +...+. |+.+++.+| .+... +..+..++.+..|++.++.+... ..+...+.+..+....+.+.
T Consensus 222 ~~~~--l~~~~~~~L~~l~l~~n-~i~~~-~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 222 KLEG--LNELVMLHLRELYLSGN-RISRS-PEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLA 290 (414)
T ss_pred eccC--cccchhHHHHHHhcccC-ccccc-cccccccccccccchhhcccccc--ccccccchHHHhccCcchhc
Confidence 4311 222233 778888887 44442 14455677888888888776653 33455666777777777654
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.21 E-value=3.1e-08 Score=96.70 Aligned_cols=126 Identities=29% Similarity=0.339 Sum_probs=71.9
Q ss_pred CCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccC
Q 009672 352 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 431 (529)
Q Consensus 352 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~ 431 (529)
|...+++.|.+.. ...++.-++.++.|+++.|++++. ..+..|+.|+.|+++.|.+...+--....|. |+.|.+++
T Consensus 166 L~~a~fsyN~L~~-mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrn 241 (1096)
T KOG1859|consen 166 LATASFSYNRLVL-MDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRN 241 (1096)
T ss_pred HhhhhcchhhHHh-HHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeecc
Confidence 4444455554332 223334445677777777777663 3566677777777777766654322223344 77777777
Q ss_pred CCCChhhhhhccCCCCCCeEecCCCCCCChh-HHHHHhCCCCCCeeeccCCccC
Q 009672 432 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK-TLELISGLTGLVSLNVSNSRIT 484 (529)
Q Consensus 432 ~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~l~~l~~L~~L~l~~~~~~ 484 (529)
|.++.. ..+.++.+|+.||++.| -+.+. -...+..+..|+.|+|.||++-
T Consensus 242 N~l~tL--~gie~LksL~~LDlsyN-ll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 242 NALTTL--RGIENLKSLYGLDLSYN-LLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred cHHHhh--hhHHhhhhhhccchhHh-hhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 766543 33556667777777777 22222 1223445567777777777764
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.20 E-value=3.8e-08 Score=93.46 Aligned_cols=196 Identities=20% Similarity=0.236 Sum_probs=144.2
Q ss_pred CCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEE
Q 009672 301 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 380 (529)
Q Consensus 301 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 380 (529)
+.--...+++.|.+.. .+..++.+..|+.+.+..|.+... +..++.+..|+.++++.|.+.... ..+..++ |+.|.
T Consensus 74 ltdt~~aDlsrNR~~e-lp~~~~~f~~Le~liLy~n~~r~i-p~~i~~L~~lt~l~ls~NqlS~lp-~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSE-LPEEACAFVSLESLILYHNCIRTI-PEAICNLEALTFLDLSSNQLSHLP-DGLCDLP-LKVLI 149 (722)
T ss_pred ccchhhhhcccccccc-CchHHHHHHHHHHHHHHhccceec-chhhhhhhHHHHhhhccchhhcCC-hhhhcCc-ceeEE
Confidence 3444456667776654 445556667788888887766543 445677888999999998877643 3444444 89999
Q ss_pred CCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCC
Q 009672 381 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 460 (529)
Q Consensus 381 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~ 460 (529)
+++|+++.. +..++..+.|..|+.+.|++...+ ..+.++.+|+.|.++.|.+.... ..+..+ .|..||++.| ++.
T Consensus 150 ~sNNkl~~l-p~~ig~~~tl~~ld~s~nei~slp-sql~~l~slr~l~vrRn~l~~lp-~El~~L-pLi~lDfScN-kis 224 (722)
T KOG0532|consen 150 VSNNKLTSL-PEEIGLLPTLAHLDVSKNEIQSLP-SQLGYLTSLRDLNVRRNHLEDLP-EELCSL-PLIRLDFSCN-KIS 224 (722)
T ss_pred EecCccccC-CcccccchhHHHhhhhhhhhhhch-HHhhhHHHHHHHHHhhhhhhhCC-HHHhCC-ceeeeecccC-cee
Confidence 999998876 556667788999999999888874 46678889999999999887763 334444 4889999998 777
Q ss_pred hhHHHHHhCCCCCCeeeccCCccChhHHHhc--cCCCCCcEEeecCcc
Q 009672 461 DKTLELISGLTGLVSLNVSNSRITSAGLRHL--KPLKNLRSLTLESCK 506 (529)
Q Consensus 461 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~ 506 (529)
. +|..|..++.|++|-|.+|++........ +...-.++|++.-|+
T Consensus 225 ~-iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 225 Y-LPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred e-cchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhcc
Confidence 6 67788899999999999999987655332 445667888888884
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.1e-05 Score=81.65 Aligned_cols=108 Identities=30% Similarity=0.315 Sum_probs=49.5
Q ss_pred CCCCCeEecCCCcCChh--hhHhhhcCCCccEEEccCC-CC-ChH---HHHhhcCCCCCCEEECCCCC-CChhhhhhhcC
Q 009672 253 LGSLFYLNLNRCQLSDD--GCEKFSKIGSLKVLNLGFN-EI-TDE---CLVHLKGLTNLESLNLDSCG-IGDEGLVNLTG 324 (529)
Q Consensus 253 ~~~L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~l~~~-~~-~~~---~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~ 324 (529)
++.|+.+.+..+..... .......++.|+.|+++++ .. ... .......+++|+.+++.++. +++.....++.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 45566665555532221 1122234555666665541 11 000 11122334566666666554 44444444332
Q ss_pred -CCCCCeEEcCCCc-cChhhhhhc-cCCCCCCeEeccCC
Q 009672 325 -LCNLKCLELSDTQ-VGSSGLRHL-SGLTNLESINLSFT 360 (529)
Q Consensus 325 -~~~L~~L~l~~~~-~~~~~~~~~-~~~~~L~~L~l~~~ 360 (529)
+++|+.|.+..|. +++.+...+ ..+++|+.|++++|
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c 305 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGC 305 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecC
Confidence 5566666655554 444443322 34555666666655
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.7e-05 Score=80.24 Aligned_cols=227 Identities=34% Similarity=0.441 Sum_probs=115.6
Q ss_pred cCCCccEEEccCC-CCChH-HHHhhcCCCCCCEEECCCC-CC-Chh---hhhhhcCCCCCCeEEcCCCc-cChhhhhhcc
Q 009672 276 KIGSLKVLNLGFN-EITDE-CLVHLKGLTNLESLNLDSC-GI-GDE---GLVNLTGLCNLKCLELSDTQ-VGSSGLRHLS 347 (529)
Q Consensus 276 ~~~~L~~L~l~~~-~~~~~-~~~~~~~~~~L~~L~l~~~-~~-~~~---~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~ 347 (529)
.++.|+.+.+..+ .+... .......++.|+.|+++++ .. ... .......+++|+.++++++. +++.....++
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 4577777777665 33322 2334556788888887762 11 111 11223345777777777776 5655555554
Q ss_pred C-CCCCCeEeccCCC-CChhhhhhhc-CCCCCcEEECCCCCCC-HHHHHH-HhcCCCCCEEecCCCC----CChHH----
Q 009672 348 G-LTNLESINLSFTG-ISDGSLRKLA-GLSSLKSLNLDARQIT-DTGLAA-LTSLTGLTHLDLFGAR----ITDSG---- 414 (529)
Q Consensus 348 ~-~~~L~~L~l~~~~-~~~~~~~~l~-~~~~L~~L~l~~~~~~-~~~~~~-l~~~~~L~~L~l~~~~----l~~~~---- 414 (529)
. |++|+.|.+.+|. +++.....+. .++.|++|+++++... +..... ..+|++++.+.+.... ++...
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~ 345 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGL 345 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHh
Confidence 3 6777777766665 5655554444 5677777777766443 221222 2356666665443332 21111
Q ss_pred ---------HHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHH-HhCCCCCCeeeccCCc-c
Q 009672 415 ---------AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL-ISGLTGLVSLNVSNSR-I 483 (529)
Q Consensus 415 ---------~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-l~~l~~L~~L~l~~~~-~ 483 (529)
......++.++.+.+.++...+.+. .+.+.+|+.++ ..... ...+..++.|+++.|. .
T Consensus 346 ~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~----------~~~l~gc~~l~-~~l~~~~~~~~~l~~L~l~~~~~~ 414 (482)
T KOG1947|consen 346 LTLTSDDLAELILRSCPKLTDLSLSYCGISDLGL----------ELSLRGCPNLT-ESLELRLCRSDSLRVLNLSDCRLV 414 (482)
T ss_pred hccCchhHhHHHHhcCCCcchhhhhhhhccCcch----------HHHhcCCcccc-hHHHHHhccCCccceEecccCccc
Confidence 1112334444444444333222211 23444444443 22222 2223337888888875 3
Q ss_pred ChhHHHhccC-CCCCcEEeecCcc-CChhHHH
Q 009672 484 TSAGLRHLKP-LKNLRSLTLESCK-VTANDIK 513 (529)
Q Consensus 484 ~~~~~~~~~~-~~~L~~L~l~~~~-~~~~~~~ 513 (529)
+......... +..++.+++.++. ++.....
T Consensus 415 t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~ 446 (482)
T KOG1947|consen 415 TDKGLRCLADSCSNLKDLDLSGCRVITLKSLE 446 (482)
T ss_pred cccchHHHhhhhhccccCCccCcccccchhhh
Confidence 4433333332 6777888888874 3433333
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.83 E-value=4.5e-06 Score=64.49 Aligned_cols=108 Identities=19% Similarity=0.235 Sum_probs=52.3
Q ss_pred CcEEECCCCCCCHH--HHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEec
Q 009672 376 LKSLNLDARQITDT--GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 453 (529)
Q Consensus 376 L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l 453 (529)
+-.++++.|.+... .+..+.....|+..++++|.+.++++..-.+++.++.|++++|.+.+. |..+..++.|+.|++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdv-PeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDV-PEELAAMPALRSLNL 107 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhc-hHHHhhhHHhhhccc
Confidence 33445555544321 123333344455555666555555444445555555566655555554 233555555555655
Q ss_pred CCCCCCChhHHHHHhCCCCCCeeeccCCccChh
Q 009672 454 SQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 486 (529)
Q Consensus 454 ~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~ 486 (529)
+.|+ +.. .|..+..+.++-.|+..+|.....
T Consensus 108 ~~N~-l~~-~p~vi~~L~~l~~Lds~~na~~ei 138 (177)
T KOG4579|consen 108 RFNP-LNA-EPRVIAPLIKLDMLDSPENARAEI 138 (177)
T ss_pred ccCc-ccc-chHHHHHHHhHHHhcCCCCccccC
Confidence 5552 222 233333355555555555544433
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=97.77 E-value=1.4e-05 Score=64.43 Aligned_cols=13 Identities=31% Similarity=0.606 Sum_probs=5.0
Q ss_pred hhhcCCCCcEEEc
Q 009672 417 YLRNFKNLRSLEI 429 (529)
Q Consensus 417 ~~~~~~~L~~L~l 429 (529)
.+..+++|+.+.+
T Consensus 76 ~F~~~~~l~~i~~ 88 (129)
T PF13306_consen 76 AFSNCTNLKNIDI 88 (129)
T ss_dssp TTTT-TTECEEEE
T ss_pred ccccccccccccc
Confidence 3333444444444
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=97.77 E-value=1.2e-05 Score=64.79 Aligned_cols=124 Identities=21% Similarity=0.311 Sum_probs=56.3
Q ss_pred hhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCC
Q 009672 368 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 447 (529)
Q Consensus 368 ~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~ 447 (529)
..|.++.+|+.+.+.. .+.......|..+++|+.+.+.++ +...+...+.++++++.+.+.. .+...+...+..+++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 3455566666666653 344444445566666777776653 5555555666776777777754 444444455666777
Q ss_pred CCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccChhHHHhccCCCCCc
Q 009672 448 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLR 498 (529)
Q Consensus 448 L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 498 (529)
|+.+++..+ +.......+.++ .|+.+.+.+ .+.......|..|++|+
T Consensus 83 l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 83 LKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp ECEEEETTT---BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred ccccccCcc--ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence 777777653 555555556665 777777665 44444455666666553
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.69 E-value=4e-05 Score=63.61 Aligned_cols=126 Identities=19% Similarity=0.227 Sum_probs=90.1
Q ss_pred CcEEECCCCCCCHHHHHHHh-cCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecC
Q 009672 376 LKSLNLDARQITDTGLAALT-SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 454 (529)
Q Consensus 376 L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~ 454 (529)
=+++++.+.++.... .++ ...+...+++++|++.... -+..++.|.+|.+.+|.++.+.+..-.-+|+|+.|.+.
T Consensus 21 e~e~~LR~lkip~ie--nlg~~~d~~d~iDLtdNdl~~l~--~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Lt 96 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIE--NLGATLDQFDAIDLTDNDLRKLD--NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILT 96 (233)
T ss_pred ccccccccccccchh--hccccccccceecccccchhhcc--cCCCccccceEEecCCcceeeccchhhhccccceEEec
Confidence 345556555554421 122 2345678888888877653 35578899999999999998877655556889999999
Q ss_pred CCCCCChhH-HHHHhCCCCCCeeeccCCccChhHH---HhccCCCCCcEEeecCcc
Q 009672 455 QNCNLTDKT-LELISGLTGLVSLNVSNSRITSAGL---RHLKPLKNLRSLTLESCK 506 (529)
Q Consensus 455 ~~~~l~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~~~ 506 (529)
+| .+.... ...+..||+|+.|.+-+|++..... ..+-.+|+|+.||.++=.
T Consensus 97 nN-si~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 97 NN-SIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred Cc-chhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 99 555543 3467789999999999999876443 345678999999988753
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.66 E-value=4.4e-05 Score=63.39 Aligned_cols=106 Identities=21% Similarity=0.275 Sum_probs=82.9
Q ss_pred CCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhh-hhccCCCCCCeEe
Q 009672 374 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLN 452 (529)
Q Consensus 374 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~L~~L~ 452 (529)
.+...+++++|.+.. ...|..++.|..|.+.+|+|+...+..-..+++|+.|.+.+|.+...+. ..+..||.|++|.
T Consensus 42 d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 467789999998877 4567888999999999999998877666678899999999998876543 2466789999999
Q ss_pred cCCCCCCChhHH---HHHhCCCCCCeeeccCCc
Q 009672 453 LSQNCNLTDKTL---ELISGLTGLVSLNVSNSR 482 (529)
Q Consensus 453 l~~~~~l~~~~~---~~l~~l~~L~~L~l~~~~ 482 (529)
+-+|+ ++...- ..+..+|+|+.||+++-.
T Consensus 120 ll~Np-v~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 120 LLGNP-VEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred ecCCc-hhcccCceeEEEEecCcceEeehhhhh
Confidence 99994 444321 135568999999998754
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.66 E-value=3.3e-05 Score=64.16 Aligned_cols=82 Identities=23% Similarity=0.293 Sum_probs=49.0
Q ss_pred CCEEecCCCCCChHHHHhhhcCCCCcEEEccCC-CCChhhhhhccC-CCCCCeEecCCCCCCChhHHHHHhCCCCCCeee
Q 009672 400 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGG-GLTDAGVKHIKD-LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 477 (529)
Q Consensus 400 L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~-~l~~~~~~~~~~-~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~ 477 (529)
++.++-+++.|..++..-+..+++++.|.+.+| .+.+.....+++ .++|+.|+|++|+.|++.....+..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 455566666666666666666666666666655 344444443333 356666666666666666666666666666666
Q ss_pred ccCC
Q 009672 478 VSNS 481 (529)
Q Consensus 478 l~~~ 481 (529)
+.+-
T Consensus 183 l~~l 186 (221)
T KOG3864|consen 183 LYDL 186 (221)
T ss_pred hcCc
Confidence 6554
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.65 E-value=7.3e-05 Score=46.43 Aligned_cols=36 Identities=33% Similarity=0.459 Sum_probs=18.6
Q ss_pred CCCeeeccCCccChhHHHhccCCCCCcEEeecCccCC
Q 009672 472 GLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 508 (529)
Q Consensus 472 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 508 (529)
+|++|++++|++.+..+ .+..+++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~~l~~-~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPP-ELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SSHGG-HGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcccCc-hHhCCCCCCEEEecCCCCC
Confidence 45555555555554322 3555566666666666555
|
... |
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.52 E-value=1.4e-05 Score=69.49 Aligned_cols=79 Identities=29% Similarity=0.342 Sum_probs=33.9
Q ss_pred CCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHH-HHhhhcCCCCcEEEc
Q 009672 351 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG-AAYLRNFKNLRSLEI 429 (529)
Q Consensus 351 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~-~~~~~~~~~L~~L~l 429 (529)
+.+.|+..+|+++++.. ...++.|++|.++-|+++. ...+..|.+|++|++..|.|.+.. ...+.++|+|+.|-|
T Consensus 20 ~vkKLNcwg~~L~DIsi--c~kMp~lEVLsLSvNkIss--L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDISI--CEKMPLLEVLSLSVNKISS--LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HhhhhcccCCCccHHHH--HHhcccceeEEeecccccc--chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 34444444444444221 2234444455554444444 233444444444444444444322 223344444444444
Q ss_pred cCCC
Q 009672 430 CGGG 433 (529)
Q Consensus 430 ~~~~ 433 (529)
..|+
T Consensus 96 ~ENP 99 (388)
T KOG2123|consen 96 DENP 99 (388)
T ss_pred ccCC
Confidence 4443
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.51 E-value=1.4e-05 Score=69.51 Aligned_cols=99 Identities=21% Similarity=0.229 Sum_probs=61.4
Q ss_pred CCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhh-hhhccCCCCCCeEe
Q 009672 374 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG-VKHIKDLSSLTLLN 452 (529)
Q Consensus 374 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~~L~~L~ 452 (529)
.+.+.|++.++.+++ ......++.|+.|.++-|+|+... .+..|.+|++|+|+.|.+.+.. ..++.++|+|+.|.
T Consensus 19 ~~vkKLNcwg~~L~D--Isic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDD--ISICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHhhhhcccCCCccH--HHHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 356667777777776 344557777777777777776643 3556777777777777666543 23556677777777
Q ss_pred cCCCCCCChhHH----HHHhCCCCCCee
Q 009672 453 LSQNCNLTDKTL----ELISGLTGLVSL 476 (529)
Q Consensus 453 l~~~~~l~~~~~----~~l~~l~~L~~L 476 (529)
|..||=.....+ ..+.-+|+|++|
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKL 122 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKL 122 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhc
Confidence 777653322222 234456666666
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00017 Score=44.79 Aligned_cols=36 Identities=33% Similarity=0.476 Sum_probs=16.5
Q ss_pred CCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCC
Q 009672 399 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 435 (529)
Q Consensus 399 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~ 435 (529)
+|++|++++|++++.++ .+.++++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~~l~~-~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPP-ELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SSHGG-HGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcccCc-hHhCCCCCCEEEecCCCCC
Confidence 44555555555554332 2445555555555555544
|
... |
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.48 E-value=5.7e-05 Score=62.81 Aligned_cols=84 Identities=32% Similarity=0.430 Sum_probs=71.8
Q ss_pred ceeEEEecCcccCchhhhhccCCCCCCeEeccCCcccCchhhhhccC-CCCCCEEEcCCCCccchhHHHHHhCCCCCCEE
Q 009672 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRG-LSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136 (529)
Q Consensus 58 ~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 136 (529)
.++.++-+++.+..+...-+.+++.++.|.+.+|..+.+...+.+++ .++|+.|++++|..+|+.....+.++++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 38888888888888888888999999999999998888888888765 46899999999988888888888888888888
Q ss_pred eccCc
Q 009672 137 DLERC 141 (529)
Q Consensus 137 ~l~~~ 141 (529)
.+.+-
T Consensus 182 ~l~~l 186 (221)
T KOG3864|consen 182 HLYDL 186 (221)
T ss_pred HhcCc
Confidence 88764
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.46 E-value=2e-05 Score=60.99 Aligned_cols=83 Identities=22% Similarity=0.212 Sum_probs=40.7
Q ss_pred CCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeE
Q 009672 372 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 451 (529)
Q Consensus 372 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L 451 (529)
....|+.+++++|.+.+.+...-...+.++.+++.+|++.+.+.+ +..++.|+.|+++.|++... +..+..+.++-.|
T Consensus 51 ~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~~N~l~~~-p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLNLRFNPLNAE-PRVIAPLIKLDML 128 (177)
T ss_pred CCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhcccccCccccc-hHHHHHHHhHHHh
Confidence 334455555555555544333333444555555555555555433 55555555555555555443 2223334455555
Q ss_pred ecCCC
Q 009672 452 NLSQN 456 (529)
Q Consensus 452 ~l~~~ 456 (529)
+..+|
T Consensus 129 ds~~n 133 (177)
T KOG4579|consen 129 DSPEN 133 (177)
T ss_pred cCCCC
Confidence 55554
|
|
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.23 E-value=6.7e-05 Score=73.69 Aligned_cols=312 Identities=26% Similarity=0.350 Sum_probs=164.9
Q ss_pred CCCeEEccCCCCChhHHHHhhccCccchhhhhhhhHHHhhhhhhhhcccCCccEEEccCCCCCHHHHHHhh----cC-CC
Q 009672 181 NLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLS----AL-GS 255 (529)
Q Consensus 181 ~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~----~~-~~ 255 (529)
.+..+.+.+|.+.+.+...+... +...+.|..|+++++.+.+.....+. .. ..
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~----------------------l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~ 145 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQA----------------------LKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCL 145 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHH----------------------hcccccHhHhhcccCCCccHhHHHHHhhcccchHH
Confidence 36777788888777666555433 45557888888888877654333332 22 45
Q ss_pred CCeEecCCCcCChhhhH----hhhcCCCccEEEccCCCCChH----HHHhhc----CCCCCCEEECCCCCCChhhhh---
Q 009672 256 LFYLNLNRCQLSDDGCE----KFSKIGSLKVLNLGFNEITDE----CLVHLK----GLTNLESLNLDSCGIGDEGLV--- 320 (529)
Q Consensus 256 L~~L~l~~~~~~~~~~~----~l~~~~~L~~L~l~~~~~~~~----~~~~~~----~~~~L~~L~l~~~~~~~~~~~--- 320 (529)
+++|++..|.++..... .+.....++.++++.|.+... .+..+. ...++++|.+.+|.++.....
T Consensus 146 l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~ 225 (478)
T KOG4308|consen 146 LQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLD 225 (478)
T ss_pred HHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHH
Confidence 66677777776654332 333456677777777765321 122222 356677777777765533222
Q ss_pred -hhcCCCC-CCeEEcCCCccChhhhh----hccCC-CCCCeEeccCCCCChhhhh----hhcCCCCCcEEECCCCCCCHH
Q 009672 321 -NLTGLCN-LKCLELSDTQVGSSGLR----HLSGL-TNLESINLSFTGISDGSLR----KLAGLSSLKSLNLDARQITDT 389 (529)
Q Consensus 321 -~~~~~~~-L~~L~l~~~~~~~~~~~----~~~~~-~~L~~L~l~~~~~~~~~~~----~l~~~~~L~~L~l~~~~~~~~ 389 (529)
.+...+. +..+++..|.+.+.+.. .+... +.++.++++.|.+++.... .+..++.++.+.+..|.+.+.
T Consensus 226 ~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~ 305 (478)
T KOG4308|consen 226 EVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDY 305 (478)
T ss_pred HHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccH
Confidence 2233333 55566666666554322 22333 4566777777766554432 233556677777777766654
Q ss_pred HHHHH----hcCCCCCEEecCCCCCChHH-----HHhhhcCCCCcEEEccCCCCChhhhhhc----cC-CCCCCeEecCC
Q 009672 390 GLAAL----TSLTGLTHLDLFGARITDSG-----AAYLRNFKNLRSLEICGGGLTDAGVKHI----KD-LSSLTLLNLSQ 455 (529)
Q Consensus 390 ~~~~l----~~~~~L~~L~l~~~~l~~~~-----~~~~~~~~~L~~L~l~~~~l~~~~~~~~----~~-~~~L~~L~l~~ 455 (529)
..... .....+..+.+.++...... ......-..+......++...+.....+ .+ -+.+..+++..
T Consensus 306 ~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 385 (478)
T KOG4308|consen 306 GVELLLEALERKTPLLHLVLGGTGKGTRGGTSVLAEADAQRQLLSELGISGNRVGEEGLALLVLAKSNPKSELLRLSLNS 385 (478)
T ss_pred HHHHHHHHhhhcccchhhhccccCccchhHHHHHHHHHHHhhhhHHHHhhhccchHHHHHHHhhhhcccCcccchhhhhc
Confidence 32221 12223333334333222111 1111112222333333333333333222 11 13355566666
Q ss_pred CCCCChh----HHHHHhCCCCCCeeeccCCccChhHHHhc-----cCCCCCcEEeecCccCChhHHHHhh
Q 009672 456 NCNLTDK----TLELISGLTGLVSLNVSNSRITSAGLRHL-----KPLKNLRSLTLESCKVTANDIKRLQ 516 (529)
Q Consensus 456 ~~~l~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~~~~~l~ 516 (529)
+ .+... ....+...+.+..++++.|.........+ .+. .++.++++.|.++..+.+...
T Consensus 386 ~-~~~~~~~~~l~~~~~~~~~l~~~~l~~n~~~~~~~~~l~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~ 453 (478)
T KOG4308|consen 386 Q-VIEGRGALRLAAQLASNEKLEILDLSLNSLHDEGAEVLTEQLSRNG-SLKALRLSRNPITALGTEELQ 453 (478)
T ss_pred c-ccccHHHHHhhhhhhhcchhhhhhhhcCccchhhHHHHHHhhhhcc-cchhhhhccChhhhcchHHHH
Confidence 5 22222 23355567888888888887655444222 344 888899999888776655444
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0028 Score=60.17 Aligned_cols=33 Identities=21% Similarity=0.254 Sum_probs=15.9
Q ss_pred CCCCCCeEeccCCcccCchhhhhccCCC-CCCEEEcCCCC
Q 009672 79 DCSNLQSLDFNFCIQISDGGLEHLRGLS-NLTSLSFRRNN 117 (529)
Q Consensus 79 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~ 117 (529)
.+..++.|++++| .+... + .+| +|++|.+++|.
T Consensus 50 ~~~~l~~L~Is~c-~L~sL-P----~LP~sLtsL~Lsnc~ 83 (426)
T PRK15386 50 EARASGRLYIKDC-DIESL-P----VLPNELTEITIENCN 83 (426)
T ss_pred HhcCCCEEEeCCC-CCccc-C----CCCCCCcEEEccCCC
Confidence 3455666666655 33332 1 222 45555555544
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.00046 Score=60.05 Aligned_cols=103 Identities=22% Similarity=0.312 Sum_probs=57.8
Q ss_pred CCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCC--CCChHHHHhhhcCCCCcEEEccCCCCChh-hhhhccCCCCCCeE
Q 009672 375 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA--RITDSGAAYLRNFKNLRSLEICGGGLTDA-GVKHIKDLSSLTLL 451 (529)
Q Consensus 375 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~--~l~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~~L~~L 451 (529)
.|+.+.+.+..++. ...+..+++|+.|.++.| .+.........++|+|+++.+++|++... ....+..+.+|..|
T Consensus 44 ~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~L 121 (260)
T KOG2739|consen 44 ELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSL 121 (260)
T ss_pred chhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhh
Confidence 34444444444433 234456667777777777 44444343445668888888888877642 12234455677778
Q ss_pred ecCCCCCCChh---HHHHHhCCCCCCeeeccC
Q 009672 452 NLSQNCNLTDK---TLELISGLTGLVSLNVSN 480 (529)
Q Consensus 452 ~l~~~~~l~~~---~~~~l~~l~~L~~L~l~~ 480 (529)
++.+|+ .+.. --..|.-+++|+.|+-.+
T Consensus 122 dl~n~~-~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 122 DLFNCS-VTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred hcccCC-ccccccHHHHHHHHhhhhccccccc
Confidence 887773 3321 223444567777765443
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.00058 Score=59.45 Aligned_cols=82 Identities=26% Similarity=0.301 Sum_probs=38.3
Q ss_pred cCCCCcEEEccCCC--CChhhhhhccCCCCCCeEecCCCCCCChh-HHHHHhCCCCCCeeeccCCccChhHH---HhccC
Q 009672 420 NFKNLRSLEICGGG--LTDAGVKHIKDLSSLTLLNLSQNCNLTDK-TLELISGLTGLVSLNVSNSRITSAGL---RHLKP 493 (529)
Q Consensus 420 ~~~~L~~L~l~~~~--l~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~---~~~~~ 493 (529)
.+++|+.|.++.|. +..........+|+|+++++++| .+... ....+..+++|..|++.+|..++..- ..|..
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~l 141 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLL 141 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccchhhhhcchhhhhcccCCccccccHHHHHHHH
Confidence 35566666666652 22222222334466666666666 44421 11233445556666666665443211 23444
Q ss_pred CCCCcEEee
Q 009672 494 LKNLRSLTL 502 (529)
Q Consensus 494 ~~~L~~L~l 502 (529)
+++|+.|+-
T Consensus 142 l~~L~~LD~ 150 (260)
T KOG2739|consen 142 LPSLKYLDG 150 (260)
T ss_pred hhhhccccc
Confidence 555555543
|
|
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.00041 Score=68.26 Aligned_cols=201 Identities=29% Similarity=0.408 Sum_probs=121.6
Q ss_pred CCEEECCCCCCChhhh----hhhcCCCCCCeEEcCCCccChhhhhhcc----CC-CCCCeEeccCCCCChhhh----hhh
Q 009672 304 LESLNLDSCGIGDEGL----VNLTGLCNLKCLELSDTQVGSSGLRHLS----GL-TNLESINLSFTGISDGSL----RKL 370 (529)
Q Consensus 304 L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~----~~-~~L~~L~l~~~~~~~~~~----~~l 370 (529)
+..+.+.+|.+..... ..+...+.|+.|++++|.+++.....+. .. +.+++|.+..|.++.... ..+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 6777777776654333 3455678899999999988866554442 22 457777887777765443 233
Q ss_pred cCCCCCcEEECCCCCCCHHHH----HHHh----cCCCCCEEecCCCCCChHHH----HhhhcCCC-CcEEEccCCCCChh
Q 009672 371 AGLSSLKSLNLDARQITDTGL----AALT----SLTGLTHLDLFGARITDSGA----AYLRNFKN-LRSLEICGGGLTDA 437 (529)
Q Consensus 371 ~~~~~L~~L~l~~~~~~~~~~----~~l~----~~~~L~~L~l~~~~l~~~~~----~~~~~~~~-L~~L~l~~~~l~~~ 437 (529)
.....++.+++..|.+...+. ..+. ...++++|.+.+|.++.... ..+...++ +..+++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 456778888888877753222 1222 24567778888877765432 23344455 66677777777766
Q ss_pred hhhhc----cCC-CCCCeEecCCCCCCChhHH----HHHhCCCCCCeeeccCCccChhHHHh----ccCCCCCcEEeecC
Q 009672 438 GVKHI----KDL-SSLTLLNLSQNCNLTDKTL----ELISGLTGLVSLNVSNSRITSAGLRH----LKPLKNLRSLTLES 504 (529)
Q Consensus 438 ~~~~~----~~~-~~L~~L~l~~~~~l~~~~~----~~l~~l~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~ 504 (529)
+...+ ... +.+++++++.| .+++... +.+..++.++.+.++.|++.+..... ......+..+.+.+
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~n-si~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~ 327 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRN-SITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGG 327 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcC-CccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhccc
Confidence 44432 223 56677777777 5554433 33445667777777777776655532 23334455555554
Q ss_pred c
Q 009672 505 C 505 (529)
Q Consensus 505 ~ 505 (529)
+
T Consensus 328 ~ 328 (478)
T KOG4308|consen 328 T 328 (478)
T ss_pred c
Confidence 4
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.0073 Score=57.48 Aligned_cols=74 Identities=12% Similarity=0.144 Sum_probs=48.8
Q ss_pred hcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCC-CCChhhhhhccCCCCC
Q 009672 370 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG-GLTDAGVKHIKDLSSL 448 (529)
Q Consensus 370 l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~-~l~~~~~~~~~~~~~L 448 (529)
+..+.+++.|++++|.+...+ .-.++|+.|.+.+|.--...+..+ .++|+.|++++| .+... + ++|
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP----~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sL-P------~sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLP----VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGL-P------ESV 114 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccC----CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccc-c------ccc
Confidence 445789999999999887753 233579999999874322223333 358999999987 44321 1 356
Q ss_pred CeEecCCC
Q 009672 449 TLLNLSQN 456 (529)
Q Consensus 449 ~~L~l~~~ 456 (529)
+.|++.++
T Consensus 115 e~L~L~~n 122 (426)
T PRK15386 115 RSLEIKGS 122 (426)
T ss_pred ceEEeCCC
Confidence 66666554
|
|
| >PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.044 Score=28.70 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=12.7
Q ss_pred CCCCcEEeecCccCChhHHHHh
Q 009672 494 LKNLRSLTLESCKVTANDIKRL 515 (529)
Q Consensus 494 ~~~L~~L~l~~~~~~~~~~~~l 515 (529)
+++|++|++++|+++..+++.+
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHh
Confidence 3566777777777776666654
|
... |
| >smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily | Back alignment and domain information |
|---|
Probab=92.35 E-value=0.21 Score=26.73 Aligned_cols=22 Identities=36% Similarity=0.495 Sum_probs=13.0
Q ss_pred CCCCeEecCCCCCCChhHHHHH
Q 009672 446 SSLTLLNLSQNCNLTDKTLELI 467 (529)
Q Consensus 446 ~~L~~L~l~~~~~l~~~~~~~l 467 (529)
++|++|+|++|+++++.....+
T Consensus 2 ~~L~~L~l~~C~~itD~gl~~l 23 (26)
T smart00367 2 PNLRELDLSGCTNITDEGLQAL 23 (26)
T ss_pred CCCCEeCCCCCCCcCHHHHHHH
Confidence 5566666666666666554443
|
|
| >smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily | Back alignment and domain information |
|---|
Probab=91.90 E-value=0.13 Score=27.58 Aligned_cols=19 Identities=47% Similarity=0.840 Sum_probs=8.7
Q ss_pred CCCCeEeccCCcccCchhh
Q 009672 81 SNLQSLDFNFCIQISDGGL 99 (529)
Q Consensus 81 ~~L~~L~l~~~~~~~~~~~ 99 (529)
++|+.|+|++|..+++.+.
T Consensus 2 ~~L~~L~l~~C~~itD~gl 20 (26)
T smart00367 2 PNLRELDLSGCTNITDEGL 20 (26)
T ss_pred CCCCEeCCCCCCCcCHHHH
Confidence 3444444444444444433
|
|
| >PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A | Back alignment and domain information |
|---|
Probab=91.84 E-value=0.088 Score=27.53 Aligned_cols=21 Identities=38% Similarity=0.570 Sum_probs=11.7
Q ss_pred CCCCeeeccCCccChhHHHhc
Q 009672 471 TGLVSLNVSNSRITSAGLRHL 491 (529)
Q Consensus 471 ~~L~~L~l~~~~~~~~~~~~~ 491 (529)
++|+.|+|++|++++.+..++
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHh
Confidence 566777777777666555443
|
... |
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=91.38 E-value=0.15 Score=24.12 Aligned_cols=14 Identities=43% Similarity=0.660 Sum_probs=7.0
Q ss_pred CCCcEEeecCccCC
Q 009672 495 KNLRSLTLESCKVT 508 (529)
Q Consensus 495 ~~L~~L~l~~~~~~ 508 (529)
++|++|++++|+++
T Consensus 1 ~~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 1 PNLRTLDLSNNRLT 14 (17)
T ss_dssp TT-SEEEETSS--S
T ss_pred CccCEEECCCCCCC
Confidence 35666677666654
|
... |
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=89.78 E-value=0.23 Score=25.29 Aligned_cols=12 Identities=50% Similarity=0.722 Sum_probs=6.6
Q ss_pred eeEEEecCcccC
Q 009672 59 LLSVDLSGSDVT 70 (529)
Q Consensus 59 l~~l~l~~~~~~ 70 (529)
|++|++++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 455555555555
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type | Back alignment and domain information |
|---|
Probab=89.28 E-value=0.48 Score=25.86 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=17.0
Q ss_pred CCCcEEeecCccCChhHHHHhh
Q 009672 495 KNLRSLTLESCKVTANDIKRLQ 516 (529)
Q Consensus 495 ~~L~~L~l~~~~~~~~~~~~l~ 516 (529)
++|++|+|++|.++..+...+.
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~ 23 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALA 23 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHH
Confidence 5678888888888887777665
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=84.37 E-value=0.87 Score=24.20 Aligned_cols=18 Identities=28% Similarity=0.381 Sum_probs=8.4
Q ss_pred CCCCeeeccCCccChhHH
Q 009672 471 TGLVSLNVSNSRITSAGL 488 (529)
Q Consensus 471 ~~L~~L~l~~~~~~~~~~ 488 (529)
++|+.|++++|.+.....
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00370 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 344555555554444433
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=84.37 E-value=0.87 Score=24.20 Aligned_cols=18 Identities=28% Similarity=0.381 Sum_probs=8.4
Q ss_pred CCCCeeeccCCccChhHH
Q 009672 471 TGLVSLNVSNSRITSAGL 488 (529)
Q Consensus 471 ~~L~~L~l~~~~~~~~~~ 488 (529)
++|+.|++++|.+.....
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00369 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 344555555554444433
|
|
| >KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=83.96 E-value=1.3 Score=43.61 Aligned_cols=38 Identities=26% Similarity=0.375 Sum_probs=18.7
Q ss_pred hcCCCCcEEEccCCCCChhhh-hhc-cCCCCCCeEecCCC
Q 009672 419 RNFKNLRSLEICGGGLTDAGV-KHI-KDLSSLTLLNLSQN 456 (529)
Q Consensus 419 ~~~~~L~~L~l~~~~l~~~~~-~~~-~~~~~L~~L~l~~~ 456 (529)
.+.+.+..+.+++|.+..... .++ ...|+|+.|+|++|
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 345566666666665543211 111 22355555555555
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 529 | ||||
| 2omy_A | 461 | Crystal Structure Of Inla S192n/hec1 Complex Length | 3e-09 | ||
| 2omv_A | 461 | Crystal Structure Of Inla S192n Y369s/hec1 Complex | 3e-09 | ||
| 2omx_A | 462 | Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX | 4e-09 | ||
| 2omt_A | 462 | Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt | 4e-09 | ||
| 2omu_A | 462 | Crystal Structure Of Inla G194s+s Y369s/hec1 Comple | 5e-09 | ||
| 1o6s_A | 466 | Internalin (Listeria Monocytogenes) E-Cadherin (Hum | 1e-08 | ||
| 2omz_A | 466 | Crystal Structure Of Inla Y369a/hec1 Complex Length | 1e-08 | ||
| 4fmz_A | 347 | Crystal Structure Of An Internalin (Inlf) From List | 3e-08 |
| >pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461 | Back alignment and structure |
|
| >pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461 | Back alignment and structure |
|
| >pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462 | Back alignment and structure |
|
| >pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462 | Back alignment and structure |
|
| >pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462 | Back alignment and structure |
|
| >pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466 | Back alignment and structure |
|
| >pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466 | Back alignment and structure |
|
| >pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria Monocytogenes Str. 4b F2365 At 1.91 A Resolution Length = 347 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 177 bits (451), Expect = 4e-49
Identities = 95/539 (17%), Positives = 170/539 (31%), Gaps = 97/539 (17%)
Query: 10 IFNELVYSRC--LTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS 67
+ + R L + L+ A+ +L + G W+ I++ L SV
Sbjct: 63 ATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRM 122
Query: 68 DVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMK 125
V+D L L +L++L + C + GL +
Sbjct: 123 IVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSI----------------------- 159
Query: 126 AFAGLINLVKLDLERCTRIHGGLVNL----KGLMKLESLNIKWCNC--ITDSDMKPL-SG 178
+ L +E + L + LE LN I+ D++ +
Sbjct: 160 -VTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARN 218
Query: 179 LTNLKSLQIS-CSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNL 237
+L S+++ + G +L++ +L
Sbjct: 219 CRSLVSVKVGDFEILELVGFF-------------------------KAAANLEEFCGGSL 253
Query: 238 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG-SLKVLNLGFNE-ITDECL 295
+L L L L+ + ++ L+L + T++
Sbjct: 254 NEDIGMPEKYMNLVFPRKLCRLGLSYM--GPNEMPILFPFAAQIRKLDLLYALLETEDHC 311
Query: 296 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLC-NLKCLELSDTQVGSSGLRHLSGLTNLES 354
++ NLE L + IGD GL L C LK L + + +
Sbjct: 312 TLIQKCPNLEVLETRNV-IGDRGLEVLAQYCKQLKRL-------------RIERGADEQG 357
Query: 355 INLSFTGISDGSLRKLA-GLSSLKSLNLDARQITDTGLAAL-TSLTGLTHLDLFG----A 408
+ +S L LA G L+ + + IT+ L ++ T L L L
Sbjct: 358 MEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREE 417
Query: 409 RITDSG-----AAYLRNFKNLRSLEI--CGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLT 460
RITD + L K LR GGLTD G+ +I + ++ + L +
Sbjct: 418 RITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLG-YVGES 476
Query: 461 DKTL-ELISGLTGLVSLNVSNSRITSAGLRHL-KPLKNLRSLTLESCKVTANDIKRLQS 517
D+ L E G L L + + + L +LR L ++ + + +Q
Sbjct: 477 DEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQM 535
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 132 bits (333), Expect = 4e-33
Identities = 75/439 (17%), Positives = 151/439 (34%), Gaps = 46/439 (10%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHL----KDCSNLQSLDF 88
L+ L L + G + I + + ++ + S ++ L + ++L+ L+F
Sbjct: 140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNF 199
Query: 89 NF--CIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH 145
+IS LE + R +L S+ + G F NL +
Sbjct: 200 YMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGF--FKAAANLEEFCGGSLNEDI 257
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPL-SGLTNLKSLQIS-CSKVTDSGIAYLKGL 203
G L+ L + + ++M L ++ L + T+ ++
Sbjct: 258 GMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKC 317
Query: 204 SISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 263
++ + +I L V ++L L +E +
Sbjct: 318 P--NLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGA-------------DEQGMEDEE 362
Query: 264 CQLSDDGCEKFSKIG-SLKVLNLGFNEITDECLVHL----KGLTNLESLNLDSC-GIGDE 317
+S G ++ L+ + + ++IT+E L + K L + + LD I D
Sbjct: 363 GLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDL 422
Query: 318 GLVN-----LTGLCNLKCLELSD--TQVGSSGLRHL-SGLTNLESINLSFTGISDGSLRK 369
L N L G L+ + GL ++ N+ + L + G SD L +
Sbjct: 423 PLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLME 482
Query: 370 LA-GLSSLKSLNLDARQITDTGLAAL-TSLTGLTHLDLFGARITDSGAAYL---RNFKNL 424
+ G +L+ L + ++ +AA T L L +L + G R + +G + R + N+
Sbjct: 483 FSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNI 542
Query: 425 RSLEICG-GGLTDAGVKHI 442
+ + G
Sbjct: 543 ELIPSRRVPEVNQQGEIRE 561
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 1e-24
Identities = 65/390 (16%), Positives = 133/390 (34%), Gaps = 51/390 (13%)
Query: 152 KGLMKLESLNIKW---CNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLSISS 207
+ K++S + C T + + NL+SL++ + + +
Sbjct: 42 RRWFKIDSETREHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVT 101
Query: 208 VIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALG--SLFYLNLNRC- 264
+ +L++L ++ V+ LD L+ L L L++C
Sbjct: 102 P------------WVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCS 149
Query: 265 QLSDDGCEKFSKI-GSLKVLNLGFNEITDECLVHL----KGLTNLESLNLDSCG---IGD 316
+ DG +K L + + +++ L + T+LE LN I
Sbjct: 150 GFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISP 209
Query: 317 EGLVNLTGLC-NLKCLELSDTQVGS--SGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 373
+ L + C +L +++ D ++ + + L +L+ L
Sbjct: 210 KDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFP 269
Query: 374 SSLKSLNLDARQITDTGLAALTSL-TGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICG 431
L L L + + L + LDL A T+ ++ NL LE
Sbjct: 270 RKLCRLGL--SYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR- 326
Query: 432 GGLTDAGVKHI-KDLSSLTLLNLSQNCN----------LTDKTLELIS-GLTGLVSLNVS 479
+ D G++ + + L L + + + ++ + L ++ G L + V
Sbjct: 327 NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVY 386
Query: 480 NSRITSAGLRHL----KPLKNLRSLTLESC 505
S IT+ L + K L + R + L+
Sbjct: 387 VSDITNESLESIGTYLKNLCDFRLVLLDRE 416
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 51.1 bits (122), Expect = 6e-07
Identities = 28/162 (17%), Positives = 51/162 (31%), Gaps = 11/162 (6%)
Query: 24 SLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG--SDVTDSGLIHL-KDC 80
+L FR L D D + + L +TD GL ++ +
Sbjct: 404 NLCDFRLVLL-DREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYS 462
Query: 81 SNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDL 138
N++ + + SD GL RG NL L R + + + A L +L L +
Sbjct: 463 PNVRWMLLGYV-GESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWV 520
Query: 139 ERCTRIHGG---LVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
+ G + + +E + + +
Sbjct: 521 QGYRASMTGQDLMQMARPYWNIELIPSRRVPEVNQQGEIREM 562
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 175 bits (444), Expect = 3e-48
Identities = 111/552 (20%), Positives = 193/552 (34%), Gaps = 110/552 (19%)
Query: 10 IFNELVYSRC--LTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS 67
+ V R + V L+ A +L + G W++ ++S + L + L
Sbjct: 56 VSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRM 115
Query: 68 DVTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
VTD L + K N + L + C S GL +
Sbjct: 116 VVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAI------------------------ 151
Query: 127 FAGLINLVKLDLERCTRIHGGLVNL----KGLMKLESLNIKWCNC-ITDSDMKPL-SGLT 180
A NL +LDL L L SLNI ++ S ++ L +
Sbjct: 152 AATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCP 211
Query: 181 NLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC 240
NLKSL+++ + V +A L L +L L G
Sbjct: 212 NLKSLKLNRA-VPLEKLATL-------------------------LQRAPQLEELGTGGY 245
Query: 241 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL-K 299
+ + S + L+ C+ L+ L+ GF + L +
Sbjct: 246 -----TAEVRPDVYSGLSVALSGCK-------------ELRCLS-GFWDAVPAYLPAVYS 286
Query: 300 GLTNLESLNLDSCGIGDEGLVNLTGLC-NLKCLELSDTQVGSSGLRHL-SGLTNLESINL 357
+ L +LNL + LV L C L+ L + D + +GL L S +L + +
Sbjct: 287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLD-YIEDAGLEVLASTCKDLRELRV 345
Query: 358 S---------FTGISDGSLRKLA-GLSSLKSLNLDARQITDTGLAAL-TSLTGLTHLDLF 406
+++ L ++ G L+S+ RQ+T+ L + + +T L
Sbjct: 346 FPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLC 405
Query: 407 G----------ARITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKHI-KDLSSLTLLNLS 454
D G + + K+LR L + G LTD ++I + +L+++
Sbjct: 406 IIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLS-GLLTDKVFEYIGTYAKKMEMLSVA 464
Query: 455 QNCNLTDKTLE-LISGLTGLVSLNVSNSRITSAGLR-HLKPLKNLRSLTLESCKVTANDI 512
+D + ++SG L L + + L + L+ +RSL + SC V+
Sbjct: 465 -FAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGAC 523
Query: 513 KRLQSRDLPNLV 524
K L + +P L
Sbjct: 524 KLLGQK-MPKLN 534
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 157 bits (398), Expect = 2e-42
Identities = 107/452 (23%), Positives = 187/452 (41%), Gaps = 63/452 (13%)
Query: 74 LIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL 133
+ + ++D L +T+L R I + L NL
Sbjct: 17 IFTDTALAEKMKTVLGKT-NVTD--TVSQTDLDQVTTLQADRLG-IK--SIDGVEYLNNL 70
Query: 134 VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
+++ ++ + LK L KL + + N I D + PL+ LTNL L + +++T
Sbjct: 71 TQINF-SNNQLTD-ITPLKNLTKLVDILMNN-NQIAD--ITPLANLTNLTGLTLFNNQIT 125
Query: 194 DSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSAL 253
D L +L L L L ++ + +LS L
Sbjct: 126 DI----------------------------DPLKNLTNLNRLELSSNTISD--ISALSGL 155
Query: 254 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 313
SL L+ + + +L+ L++ N+++D + L LTNLESL +
Sbjct: 156 TSLQQLSFGNQVTDLKP---LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQ 210
Query: 314 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 373
I + L L NL L L+ Q+ + L+ LTNL ++L+ IS+ L L+GL
Sbjct: 211 I--SDITPLGILTNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISN--LAPLSGL 264
Query: 374 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 433
+ L L L A QI++ ++ L LT LT+L+L ++ D + + N KNL L +
Sbjct: 265 TKLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNN 320
Query: 434 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 493
++D + + L+ L L N ++D + ++ LT + L+ +++I+ L L
Sbjct: 321 ISD--ISPVSSLTKLQRLFFYNN-KVSD--VSSLANLTNINWLSAGHNQISD--LTPLAN 373
Query: 494 LKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 525
L + L L T + + +PN V
Sbjct: 374 LTRITQLGLNDQAWTNAPVNYKANVSIPNTVK 405
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 145 bits (368), Expect = 2e-38
Identities = 98/429 (22%), Positives = 174/429 (40%), Gaps = 39/429 (9%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+ ++ + + ++ +NL ++F+ Q++D + L+ L+ L + N
Sbjct: 46 DQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNN-QLTD--ITPLKNLTKLVDILMNNN 100
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
I + A L NL L L +I + LK L L L + SD+ L
Sbjct: 101 Q-IA--DITPLANLTNLTGLTLFNN-QIT-DIDPLKNLTNLNRLELSSNTI---SDISAL 152
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
SGLT+L+ L +A L L + S I L L L L
Sbjct: 153 SGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS-------VLAKLTNLESLI 205
Query: 237 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 296
++ + L L +L L+LN QL D + + +L L+L N+I++ L
Sbjct: 206 ATNNQISD--ITPLGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISN--LA 259
Query: 297 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 356
L GLT L L L + I + L GL L LEL++ Q+ + +S L NL +
Sbjct: 260 PLSGLTKLTELKLGANQI--SNISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLT 315
Query: 357 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 416
L F ISD + ++ L+ L+ L +++D +++L +LT + L +I+D
Sbjct: 316 LYFNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP- 370
Query: 417 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 476
L N + L + T+ + +++++ N +N IS
Sbjct: 371 -LANLTRITQLGLNDQAWTN---APVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEP 426
Query: 477 NVSNSRITS 485
+++ + +
Sbjct: 427 DITWNLPSY 435
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 138 bits (351), Expect = 6e-37
Identities = 83/398 (20%), Positives = 158/398 (39%), Gaps = 56/398 (14%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
++ + + + D + ++D + L ++T L
Sbjct: 2 AATLATLPAPINQ--IFPDADLAEGIRAVLQKA-SVTD--VVTQEELESITKLVVAGEK- 55
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
+ ++ L NL L+L +I + L L+KL +L I N ITD + L
Sbjct: 56 VA--SIQGIEYLTNLEYLNLNGN-QITD-ISPLSNLVKLTNLYIGT-NKITD--ISALQN 108
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLE 238
LTNL+ L ++ ++D IS L +L K+ LNL
Sbjct: 109 LTNLRELYLNEDNISD----------ISP------------------LANLTKMYSLNLG 140
Query: 239 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 298
+ L LS + L YL + ++ D + + L L+L +N+I D + L
Sbjct: 141 ANHNLSD-LSPLSNMTGLNYLTVTESKVKD--VTPIANLTDLYSLSLNYNQIED--ISPL 195
Query: 299 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 358
LT+L I + + + L L++ + ++ + L L+ L+ L + +
Sbjct: 196 ASLTSLHYFTAYVNQI--TDITPVANMTRLNSLKIGNNKI--TDLSPLANLSQLTWLEIG 251
Query: 359 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 418
ISD + + L+ LK LN+ + QI+D ++ L +L+ L L L ++ + +
Sbjct: 252 TNQISD--INAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVI 307
Query: 419 RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 456
NL +L + +TD ++ + LS + + +
Sbjct: 308 GGLTNLTTLFLSQNHITD--IRPLASLSKMDSADFANQ 343
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 138 bits (350), Expect = 8e-37
Identities = 98/402 (24%), Positives = 172/402 (42%), Gaps = 57/402 (14%)
Query: 83 LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 142
+L I+ + L+ ++ + +T + L ++ KL +
Sbjct: 2 AATLATLPA-PINQ--IFPDADLAEGIRAVLQKAS-VT--DVVTQEELESITKLVV-AGE 54
Query: 143 RIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKG 202
++ + ++ L LE LN+ N ITD + PLS L L +L I +K+TD
Sbjct: 55 KVAS-IQGIEYLTNLEYLNLNG-NQITD--ISPLSNLVKLTNLYIGTNKITD-------- 102
Query: 203 LSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 262
IS+ L +L L L L ++ + L+ L ++ LNL
Sbjct: 103 --ISA------------------LQNLTNLRELYLNEDNISD--ISPLANLTKMYSLNLG 140
Query: 263 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 322
D S + L L + +++ D + + LT+L SL+L+ I E + L
Sbjct: 141 ANHNLSD-LSPLSNMTGLNYLTVTESKVKD--VTPIANLTDLYSLSLNYNQI--EDISPL 195
Query: 323 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 382
L +L Q+ + + ++ +T L S+ + I+D L LA LS L L +
Sbjct: 196 ASLTSLHYFTAYVNQI--TDITPVANMTRLNSLKIGNNKITD--LSPLANLSQLTWLEIG 251
Query: 383 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 442
QI+D + A+ LT L L++ +I+D L N L SL + L + ++ I
Sbjct: 252 TNQISD--INAVKDLTKLKMLNVGSNQISDISV--LNNLSQLNSLFLNNNQLGNEDMEVI 307
Query: 443 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
L++LT L LSQN ++TD + ++ L+ + S + +N I
Sbjct: 308 GGLTNLTTLFLSQN-HITD--IRPLASLSKMDSADFANQVIK 346
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 137 bits (347), Expect = 2e-36
Identities = 85/361 (23%), Positives = 160/361 (44%), Gaps = 51/361 (14%)
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISS 207
+ L + ++ + +D+ L ++ L ++ KV ++G+
Sbjct: 15 IFPDADLAEGIRAVLQKAS---VTDVVTQEELESITKLVVAGEKVAS-----IQGIE--- 63
Query: 208 VIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 267
L L LNL G +T + LS L L L + +++
Sbjct: 64 --------------------YLTNLEYLNLNGNQITD--ISPLSNLVKLTNLYIGTNKIT 101
Query: 268 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 327
D + +L+ L L + I+D + L LT + SLNL + L L+ +
Sbjct: 102 D--ISALQNLTNLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNL-SDLSPLSNMTG 156
Query: 328 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 387
L L +++++V + ++ LT+L S++L++ I D + LA L+SL QIT
Sbjct: 157 LNYLTVTESKV--KDVTPIANLTDLYSLSLNYNQIED--ISPLASLTSLHYFTAYVNQIT 212
Query: 388 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 447
D + + ++T L L + +ITD L N L LEI ++D + +KDL+
Sbjct: 213 D--ITPVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD--INAVKDLTK 266
Query: 448 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 507
L +LN+ N ++D + +++ L+ L SL ++N+++ + + + L NL +L L +
Sbjct: 267 LKMLNVGSN-QISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI 323
Query: 508 T 508
T
Sbjct: 324 T 324
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 128 bits (323), Expect = 4e-33
Identities = 91/355 (25%), Positives = 152/355 (42%), Gaps = 52/355 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
S+ + ++G V + ++ +NL+ L+ N QI+D + L L LT+L
Sbjct: 44 ESITKLVVAGEKVAS--IQGIEYLTNLEYLNLNGN-QITD--ISPLSNLVKLTNLYIG-T 97
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + A L NL +L L I + L L K+ SLN+ + + SD+ PL
Sbjct: 98 NKIT--DISALQNLTNLRELYLNED-NISD-ISPLANLTKMYSLNLGANHNL--SDLSPL 151
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
S +T L L ++ SKV D ++ + +L L L+
Sbjct: 152 SNMTGLNYLTVTESKVKD----------VTP------------------IANLTDLYSLS 183
Query: 237 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 296
L + + L++L SL Y Q++D + + L L +G N+ITD L
Sbjct: 184 LNYNQIED--ISPLASLTSLHYFTAYVNQITDI--TPVANMTRLNSLKIGNNKITD--LS 237
Query: 297 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 356
L L+ L L + + I + + L LK L + Q+ S + L+ L+ L S+
Sbjct: 238 PLANLSQLTWLEIGTNQI--SDINAVKDLTKLKMLNVGSNQI--SDISVLNNLSQLNSLF 293
Query: 357 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 411
L+ + + + + GL++L +L L ITD + L SL+ + D I
Sbjct: 294 LNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD--IRPLASLSKMDSADFANQVIK 346
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 50.2 bits (121), Expect = 7e-07
Identities = 25/110 (22%), Positives = 45/110 (40%), Gaps = 9/110 (8%)
Query: 399 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 458
G L A I + + +TD V ++L S+T L ++
Sbjct: 1 GAATLATLPAPINQIFP--DADLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGE-K 55
Query: 459 LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 508
+ ++ I LT L LN++ ++IT + L L L +L + + K+T
Sbjct: 56 VAS--IQGIEYLTNLEYLNLNGNQITD--ISPLSNLVKLTNLYIGTNKIT 101
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 138 bits (350), Expect = 6e-36
Identities = 89/485 (18%), Positives = 170/485 (35%), Gaps = 90/485 (18%)
Query: 57 SSLLSVDLSGSDVTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEH----LRGLSNLTSL 111
+ S+D+ +++D+ L Q + + C +++ + LR L L
Sbjct: 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAEL 61
Query: 112 SFRRNNAITAQGMKAFAGLI-----NLVKLDLERCTRIHGGLVNLKGLMK----LESLNI 162
+ R+N + G+ + + KL L+ C G L ++ L+ L++
Sbjct: 62 NL-RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL 120
Query: 163 KWCNCITDSDMKPLSGL-----TNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMII 217
N + D+ ++ L L+ LQ+ ++ + L S+
Sbjct: 121 SD-NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP------------LASV-- 165
Query: 218 RLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSAL-----GSLFYLNLNRCQLSDDGCE 272
L + L + + A + L L L L C ++ D C
Sbjct: 166 --------LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR 217
Query: 273 KFSKI----GSLKVLNLGFNEITDECLVHL-----KGLTNLESLNLDSCGIGDEGLVNLT 323
I SL+ L LG N++ D + L + L +L + CGI +G +L
Sbjct: 218 DLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLC 277
Query: 324 ----GLCNLKCLELSDTQVGSSGLRHLSGL-----TNLESINLSFTGISDGSLRKLAGL- 373
+LK L L+ ++G G R L LES+ + + + +
Sbjct: 278 RVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVL 337
Query: 374 ---SSLKSLNLDARQITDTGLAAL-----TSLTGLTHLDLFGARITDSGAAY----LRNF 421
L L + ++ D G+ L + L L L ++DS + L
Sbjct: 338 AQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLAN 397
Query: 422 KNLRSLEICGGGLTDAGVKHIKDL-----SSLTLLNLSQNCNLTDKTLELISGL----TG 472
+LR L++ L DAG+ + + L L L + +++ + + L
Sbjct: 398 HSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLY-DIYWSEEMEDRLQALEKDKPS 456
Query: 473 LVSLN 477
L ++
Sbjct: 457 LRVIS 461
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 130 bits (330), Expect = 3e-33
Identities = 96/472 (20%), Positives = 170/472 (36%), Gaps = 85/472 (18%)
Query: 106 SNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRIHGGLVN----LKGLMKLESL 160
++ SL + ++ L + L+ C + L+ L L
Sbjct: 3 LDIQSLDIQCEE-LSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 61
Query: 161 NIKWCNCITDSDMKPLSGL-----TNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSM 215
N++ N + D + + ++ L + +T +G L S
Sbjct: 62 NLRS-NELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGV------------LSST 108
Query: 216 IIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALG-----SLFYLNLNRCQLSDDG 270
L +L L L+L + A L L L L L C LS
Sbjct: 109 ----------LRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS 158
Query: 271 CEKFSKI----GSLKVLNLGFNEITDECLVHL-KGL----TNLESLNLDSCGIGDEGLVN 321
CE + + K L + N+I + + L +GL LE+L L+SCG+ + +
Sbjct: 159 CEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRD 218
Query: 322 ----LTGLCNLKCLELSDTQVGSSGLRHLS-----GLTNLESINLSFTGISDGSLRKLA- 371
+ +L+ L L ++G G+ L + L ++ + GI+ L
Sbjct: 219 LCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR 278
Query: 372 ---GLSSLKSLNLDARQITDTGLAALTSL-----TGLTHLDLFGARITDSGAAY----LR 419
SLK L+L ++ D G L L L + T + ++ L
Sbjct: 279 VLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLA 338
Query: 420 NFKNLRSLEICGGGLTDAGVKHI-----KDLSSLTLLNLSQNCNLTDKTLELIS----GL 470
+ L L+I L DAGV+ + + S L +L L+ +C+++D + ++
Sbjct: 339 QNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLA-DCDVSDSSCSSLAATLLAN 397
Query: 471 TGLVSLNVSNSRITSAGLRHL-----KPLKNLRSLTLESCKVTANDIKRLQS 517
L L++SN+ + AG+ L +P L L L + RLQ+
Sbjct: 398 HSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQA 449
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 134 bits (339), Expect = 9e-34
Identities = 96/504 (19%), Positives = 161/504 (31%), Gaps = 46/504 (9%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+S ++ S + + NL LD C QI + + L +L N
Sbjct: 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRC-QIYWIHEDTFQSQHRLDTLVLTAN 91
Query: 117 NAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
+ A +G L L + + I L LESL + N I+ +
Sbjct: 92 P-LIFMAETALSGPKALKHLFFIQTGISSIDFIP--LHNQKTLESLYLGS-NHISSIKLP 147
Query: 175 PLSGLTNLKSLQISC---SKVTDSGIAYLKGL-------------SISSVIFILCSM--- 215
LK L ++ ++ L+ I F
Sbjct: 148 KGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSL 207
Query: 216 ------IIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALG--SLFYLNLNRCQLS 267
+ + + +++Q L L E L S+ +NL +
Sbjct: 208 NFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF 267
Query: 268 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 327
+ F L+ L+L ++ E L GL+ L+ L L + + ++ + +
Sbjct: 268 NISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPS 326
Query: 328 LKCLELSD-TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK--LAGLSSLKSLNLDAR 384
L L + T+ G L L NL ++LS I L LS L+SLNL
Sbjct: 327 LTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN 386
Query: 385 QITDTGLAALTSLTGLTHLDLFGARITDSGA-AYLRNFKNLRSLEICGGGLTDAGVKHIK 443
+ A L LDL R+ A + +N L+ L + L + +
Sbjct: 387 EPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFD 446
Query: 444 DLSSLTLLNLSQN--CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 501
L +L LNL N + + L L L +S ++S LK + +
Sbjct: 447 GLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVD 506
Query: 502 LESCKVTANDIKRLQSRDLPNLVS 525
L N + L +L
Sbjct: 507 LSH-----NRLTSSSIEALSHLKG 525
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 4e-31
Identities = 101/459 (22%), Positives = 157/459 (34%), Gaps = 18/459 (3%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+L + + ++ I L + L+SL IS L L L F+ N
Sbjct: 105 KALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSN-HISSIKLPKGFPTEKLKVLDFQ-N 162
Query: 117 NAITAQGMKAFAGLINLVKLDLE-RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
NAI + + L L L I G +SLN K
Sbjct: 163 NAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGG-TQNLLVIFKG 221
Query: 176 LSG--LTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVF-LTSLQKL 232
L + +L D A +GL SV I F + L
Sbjct: 222 LKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKH-YFFNISSNTFHCFSGL 280
Query: 233 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI-T 291
L+L ++ L L +L L L+ + + S SL L++ N
Sbjct: 281 QELDLTATHLSEL-PSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRL 339
Query: 292 DECLVHLKGLTNLESLNLDSCGIGDEGLVN--LTGLCNLKCLELSDTQVGSSGLRHLSGL 349
+ L+ L NL L+L I N L L +L+ L LS + S
Sbjct: 340 ELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKEC 399
Query: 350 TNLESINLSFTGISD-GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 408
LE ++L+FT + + L LK LNL + + L L HL+L G
Sbjct: 400 PQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGN 459
Query: 409 RITDSGAAYLRNFKNLRSLE---ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 465
+ + L LE + L+ L + ++LS N LT ++E
Sbjct: 460 HFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN-RLTSSSIE 518
Query: 466 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 504
+S L G+ LN++++ I+ L L R++ L
Sbjct: 519 ALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQ 556
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 113 bits (285), Expect = 8e-27
Identities = 94/431 (21%), Positives = 164/431 (38%), Gaps = 23/431 (5%)
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLESLNI 162
++ L F N + F+ LINL LDL RC IH + +L++L +
Sbjct: 32 PNSTECLEFSFNV-LPTIQNTTFSRLINLTFLDLTRCQIYWIHEDT--FQSQHRLDTLVL 88
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCL 222
N + LSG LK L + ++ L + L S I L
Sbjct: 89 TA-NPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQK-TLESLYLGSNHISSIKL 146
Query: 223 HVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSL--FYLNLNRCQLSDDGCEKFSKIGSL 280
+KL +L+ + + + +S+L LNLN ++ F
Sbjct: 147 PKG-FPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSA-VF 204
Query: 281 KVLNLGFNEITDECLVHLKG--LTNLESLNLDSCGIGDEGLVNLTGLC--NLKCLELSDT 336
+ LN G + LK + +L + D GLC +++ + L
Sbjct: 205 QSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKH 264
Query: 337 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 396
+ + L+ ++L+ T +S+ L GLS+LK L L A + + + ++
Sbjct: 265 YFFNISSNTFHCFSGLQELDLTATHLSELP-SGLVGLSTLKKLVLSANKFENLCQISASN 323
Query: 397 LTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH--IKDLSSLTLLNL 453
LTHL + G + + G L N +NLR L++ + + + +++LS L LNL
Sbjct: 324 FPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNL 383
Query: 454 SQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH-LKPLKNLRSLTLESCKVTANDI 512
S N E L L+++ +R+ + + L L+ L L + +
Sbjct: 384 SYN-EPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSE 442
Query: 513 KRLQSRDLPNL 523
+ LP L
Sbjct: 443 QLFDG--LPAL 451
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 2e-08
Identities = 51/267 (19%), Positives = 89/267 (33%), Gaps = 33/267 (12%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
S+L + LS + + I + +L L + + G L L NL L +
Sbjct: 301 STLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHD 360
Query: 117 NAITAQGM--KAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
+ I L +L L+L + K +LE L++ +
Sbjct: 361 D-IETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEA--FKECPQLELLDLAFTRLKVKDA 417
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLS-----------ISSVIFILCSMIIRLFC 221
P L LK L +S S + S GL + + L
Sbjct: 418 QSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGR 477
Query: 222 LHV--------------FLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 267
L + TSL+ + ++L +T++ +++LS L + YLNL +S
Sbjct: 478 LEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHIS 536
Query: 268 DDGCEKFSKIGSLKVLNLGFNEITDEC 294
+ + +NL N + C
Sbjct: 537 IILPSLLPILSQQRTINLRQNPLDCTC 563
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 132 bits (333), Expect = 7e-33
Identities = 94/487 (19%), Positives = 163/487 (33%), Gaps = 49/487 (10%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+++ ++L+ + + + S L SLD F IS E + L L L+ + N
Sbjct: 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN-TISKLEPELCQKLPMLKVLNLQHN 83
Query: 117 NAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
++ K FA NL +L L +I L +L++ N ++ + +
Sbjct: 84 E-LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNP--FVKQKNLITLDLSH-NGLSSTKLG 139
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTL 234
L NL+ L L I ++ + + L
Sbjct: 140 TQVQLENLQEL-------------LLSNNKIQALKSEELD-----------IFANSSLKK 175
Query: 235 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG---SLKVLNLGFNEIT 291
L L + A+G LF L LN QL EK S++ L+L ++++
Sbjct: 176 LELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLS 235
Query: 292 DECLVHLKGL--TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 349
GL TNL L+L + G + L L+ L + L GL
Sbjct: 236 TTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGL 295
Query: 350 TNLESINL---------SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 400
N+ +NL S + L L+ LN++ I T L L
Sbjct: 296 FNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINL 355
Query: 401 THLDLFGARIT----DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 456
+L L + + + L L + ++ L L +L+L N
Sbjct: 356 KYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLN 415
Query: 457 CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 516
+ T + GL + + +S ++ + +L+ L L + D
Sbjct: 416 EIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSP 475
Query: 517 SRDLPNL 523
+ L NL
Sbjct: 476 FQPLRNL 482
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 118 bits (299), Expect = 2e-28
Identities = 84/438 (19%), Positives = 147/438 (33%), Gaps = 52/438 (11%)
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLESLNI 162
+N+T L+ N + F L LD+ +++ L + L L+ LN+
Sbjct: 24 PTNITVLNLTHNQ-LRRLPAANFTRYSQLTSLDVGFNTISKLEPEL--CQKLPMLKVLNL 80
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLS-----------ISSVIFI 211
+ ++ K + TNL L + + + +SS
Sbjct: 81 QHNE-LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG 139
Query: 212 LCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALG--SLFYLNLNRCQLSDD 269
L+ L L L + A + L SL L L+ Q+ +
Sbjct: 140 TQV-------------QLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEF 186
Query: 270 GCEKFSKIGSLKVLNLGFNEITD---ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 326
F IG L L L ++ E L T++ +L+L + + GL
Sbjct: 187 SPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLK 246
Query: 327 --NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD-- 382
NL L+LS + G + L LE L + I L GL +++ LNL
Sbjct: 247 WTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS 306
Query: 383 -------ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 435
+ + L L HL++ I + NL+ L + +
Sbjct: 307 FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTS 366
Query: 436 DAGVKHIK----DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH- 490
+ + S L +LNL++N ++ + S L L L++ + I
Sbjct: 367 LRTLTNETFVSLAHSPLHILNLTKN-KISKIESDAFSWLGHLEVLDLGLNEIGQELTGQE 425
Query: 491 LKPLKNLRSLTLESCKVT 508
+ L+N+ + L K
Sbjct: 426 WRGLENIFEIYLSYNKYL 443
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 3e-23
Identities = 84/401 (20%), Positives = 147/401 (36%), Gaps = 30/401 (7%)
Query: 55 QGSSLLSVDLSGSDVT--DSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS 112
+S+ ++ LS S ++ + +NL LD ++ ++ G + L L
Sbjct: 220 ANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYN-NLNVVGNDSFAWLPQLEYFF 278
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN---------LKGLMKLESLNIK 163
NN I + GL N+ L+L+R + + L LE LN++
Sbjct: 279 LEYNN-IQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNME 337
Query: 164 WCNCITDSDMKPLSGLTNLKSLQIS--CSKVTDSGIAYLKGLSISSVIFI-LCSMIIRLF 220
N I +GL NLK L +S + + L+ S + + L I
Sbjct: 338 D-NDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKI 396
Query: 221 CLHVFLTSLQKLTLLNLEGCPVTAA-CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS 279
F + L L +L+L + L ++F + L+ + F+ + S
Sbjct: 397 ESDAF-SWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPS 455
Query: 280 LKVLNLGFNEIT--DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 337
L+ L L + D + L NL L+L + I + L GL L+ L+L
Sbjct: 456 LQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNN 515
Query: 338 --------VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 389
+ L GL++L +NL G + + L LK ++L +
Sbjct: 516 LARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTL 575
Query: 390 GLAALTSLTGLTHLDLFGARITD-SGAAYLRNFKNLRSLEI 429
+ + L L+L IT + F+NL L++
Sbjct: 576 PASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDM 616
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 82.7 bits (205), Expect = 9e-17
Identities = 48/254 (18%), Positives = 89/254 (35%), Gaps = 9/254 (3%)
Query: 279 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 338
S +V + ++T V TN+ LNL + N T L L++ +
Sbjct: 5 SHEVADCSHLKLTQ---VPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61
Query: 339 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 398
L L+ +NL +S S + A ++L L+L + I
Sbjct: 62 SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQK 121
Query: 399 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD--AGVKHIKDLSSLTLLNLSQN 456
L LDL ++ + +NL+ L + + + I SSL L LS N
Sbjct: 122 NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN 181
Query: 457 CNLTDKTLELISGLTGLVSLNVSNSRITS---AGLRHLKPLKNLRSLTLESCKVTANDIK 513
+ + + + L L ++N ++ L ++R+L+L + +++
Sbjct: 182 -QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT 240
Query: 514 RLQSRDLPNLVSFR 527
NL
Sbjct: 241 TFLGLKWTNLTMLD 254
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 127 bits (321), Expect = 3e-31
Identities = 94/515 (18%), Positives = 176/515 (34%), Gaps = 64/515 (12%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++ + LS + + LQ L+ E R L NL L +
Sbjct: 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN---LKGLMKLESLNIKWCNCITDSDM 173
I AF GL +L +L L C + ++ + L L L++ +
Sbjct: 84 K-IYFLHPDAFQGLFHLFELRLYFC-GLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLH 141
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGL----------------SISSVIFILCSMII 217
L +LKS+ S +++ L+ L S SV + C
Sbjct: 142 PSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPF 201
Query: 218 RLFCLHVF--------------------------LTSLQKLTLLNLEGCPVTAACLDSLS 251
R L + L + + ++ +
Sbjct: 202 RNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFA 261
Query: 252 ALG--SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 309
L S+ +L+L+ + F + LKVLNL +N+I GL NL+ LNL
Sbjct: 262 GLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNL 321
Query: 310 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 369
+G+ N GL + ++L + + L L++++L ++
Sbjct: 322 SYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT----- 376
Query: 370 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFKNLRSLE 428
+ + S+ + L ++ LT + L R+ + +L +L+ L
Sbjct: 377 IHFIPSIPDIFLSGNKLVTLPKINLT----ANLIHLSENRLENLDILYFLLRVPHLQILI 432
Query: 429 ICGGGLTD-AGVKHIKDLSSLTLLNLSQN----CNLTDKTLELISGLTGLVSLNVSNSRI 483
+ + +G + + SL L L +N T+ ++ GL+ L L ++++ +
Sbjct: 433 LNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYL 492
Query: 484 TSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSR 518
S L LR L+L S ++T L +
Sbjct: 493 NSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPAN 527
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 6e-27
Identities = 85/475 (17%), Positives = 160/475 (33%), Gaps = 49/475 (10%)
Query: 95 SDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC---TRIHGGLVN 150
L + + L+ L N I +F L L L+L I
Sbjct: 12 RFCNLTQVPQVLNTTERLLLSFNY-IRTVTASSFPFLEQLQLLELGSQYTPLTIDKEA-- 68
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGI--AYLKGLSISSV 208
+ L L L++ + I GL +L L++ ++D+ + Y + L +
Sbjct: 69 FRNLPNLRILDLGS-SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTR 127
Query: 209 IFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALG--SLFYLNLNRCQL 266
+ + + I L+ LH L L ++ + C L L +L + +L L
Sbjct: 128 LDLSKNQIRSLY-LHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSL 186
Query: 267 SDDGCEKFSKIG------SLKVLNLGFNEITDE------------CLVHLKGLTNLESLN 308
+ K L++L++ N T + L ++
Sbjct: 187 YSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAG 246
Query: 309 LDSCGIGDEGLVNLTGLC--NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 366
I D GL +++ L+LS V S R L +L+ +NL++ I+ +
Sbjct: 247 FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIA 306
Query: 367 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 426
GL +L+ LNL + + + L + ++DL I + + L++
Sbjct: 307 DEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQT 366
Query: 427 LEICGGGLTD-AGVKHIKDLS--------------SLTLLNLSQNCNLTDKTLELISGLT 471
L++ LT + I D+ + L++LS+N L + +
Sbjct: 367 LDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVP 426
Query: 472 GLVSLNVSNSRITSAGLRHL-KPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 525
L L ++ +R +S +L L L + L L
Sbjct: 427 HLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSH 481
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 2e-22
Identities = 92/524 (17%), Positives = 164/524 (31%), Gaps = 81/524 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIH--LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
L + L ++D+ L ++ L LD + S L++L S+ F
Sbjct: 97 FHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFS 156
Query: 115 RNNAITAQGMKAFAGL--INLVKLDL------ERCTRIHGGLVNLKGLMKLESLNIKW-- 164
+N I L L L R + G +N M LE L++
Sbjct: 157 -SNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNG 215
Query: 165 ---------CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSV------- 208
N I+ S L ++ + D GL+ SSV
Sbjct: 216 WTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSH 275
Query: 209 --IFILCSMIIR----LFCLHV-----------FLTSLQKLTLLNLEGCPVTAACLDSLS 251
+F L S + L L++ L L +LNL + +
Sbjct: 276 GFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFY 335
Query: 252 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 311
L + Y++L + ++ + F + L+ L+L N +T + + ++ + L
Sbjct: 336 GLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSG 390
Query: 312 CGI---------------------GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL-SGL 349
+ + L L + +L+ L L+ + S S
Sbjct: 391 NKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSEN 450
Query: 350 TNLESINLSFTGISDGSLRKL-----AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 404
+LE + L + +L GLS L+ L L+ + + LT L L
Sbjct: 451 PSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLS 510
Query: 405 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 464
L R+T L NL L+I L LS L + + C T
Sbjct: 511 LNSNRLTVLSHNDL--PANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFICECELSTF 568
Query: 465 -ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 507
++ ++ ++ L +L + + +V
Sbjct: 569 INWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEV 612
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 61.4 bits (149), Expect = 4e-10
Identities = 38/170 (22%), Positives = 61/170 (35%), Gaps = 14/170 (8%)
Query: 362 ISDGSLRKL----AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS-GAA 416
I+ L L++ + L L I ++ L L L+L +
Sbjct: 8 IAFYRFCNLTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKE 67
Query: 417 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE--LISGLTGLV 474
RN NLR L++ + + L L L L L+D L+ L L
Sbjct: 68 AFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFC-GLSDAVLKDGYFRNLKALT 126
Query: 475 SLNVSNSRITSAGLR-HLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 523
L++S ++I S L L +L+S+ S N I + +L L
Sbjct: 127 RLDLSKNQIRSLYLHPSFGKLNSLKSIDFSS-----NQIFLVCEHELEPL 171
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 124 bits (314), Expect = 2e-30
Identities = 99/509 (19%), Positives = 172/509 (33%), Gaps = 58/509 (11%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
SS ++DLS + + + S LQ LD + C +I + GL +L++L N
Sbjct: 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRC-EIETIEDKAWHGLHHLSNLILTGN 90
Query: 117 NAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
I + +F+GL +L L + + L+ L+ LN+ +
Sbjct: 91 P-IQSFSPGSFSGLTSLENLVAVETKLASLESFP--IGQLITLKKLNVAHNFIHSCKLPA 147
Query: 175 PLSGLTNLKSLQISC---SKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVF-LTSLQ 230
S LTNL + +S +T + + +L+ ++ + I F L
Sbjct: 148 YFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLH 207
Query: 231 KLTLL-NLEGCPVTAACLDSLSALGSL-----------------------------FYLN 260
+LTL N + CL +L+ L
Sbjct: 208 ELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFR 267
Query: 261 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 320
L D KF + ++ ++L I L + +SL++ C +
Sbjct: 268 LTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQLKQ---F 322
Query: 321 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS---FTGISDGSLRKLAGLSSLK 377
L LK L L+ + S L +L ++LS + S L G +SL+
Sbjct: 323 PTLDLPFLKSLTLTMNK--GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDL-GTNSLR 379
Query: 378 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY-LRNFKNLRSLEICGGGLTD 436
L+L A L L HLD + + + + L L+I
Sbjct: 380 HLDLSFNGAIIMS-ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKI 438
Query: 437 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 496
L+SL L ++ N + + + T L L++S ++ L
Sbjct: 439 DFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHR 498
Query: 497 LRSLTLESCKVTANDIKRLQSRDLPNLVS 525
L+ L + N++ L S L S
Sbjct: 499 LQLLNMSH-----NNLLFLDSSHYNQLYS 522
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 120 bits (303), Expect = 4e-29
Identities = 82/463 (17%), Positives = 151/463 (32%), Gaps = 27/463 (5%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGL-EHLRGLSNLTSLSFRR 115
+SL ++ + + + L+ L+ I L + L+NL +
Sbjct: 104 TSLENLVAVETKLASLESFPIGQLITLKKLNVAHN-FIHSCKLPAYFSNLTNLVHVDLSY 162
Query: 116 NNAITAQGMKAFAGLINL----VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS 171
N I + L + LD+ I +KL L ++ ++
Sbjct: 163 NY-IQTITVNDLQFLRENPQVNLSLDMSLN-PIDFIQDQAFQGIKLHELTLRGNFNSSNI 220
Query: 172 DMKPLSGLTNLKSLQIS------CSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVF 225
L L L ++ + + ++GL ++ + V
Sbjct: 221 MKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK 280
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285
L ++ ++L G + L+ + L++ RCQL + LK L L
Sbjct: 281 FHCLANVSAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQLKQFP---TLDLPFLKSLTL 335
Query: 286 GFNEITDECLVHLKGLTNLESLNLDSCGIG--DEGLVNLTGLCNLKCLELSDTQVGSSGL 343
N+ + L +L L+L + + G +L+ L+LS
Sbjct: 336 TMNKGSI--SFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS- 392
Query: 344 RHLSGLTNLESINLSFTGISD-GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 402
+ GL L+ ++ + + L L L++ LT L
Sbjct: 393 ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNT 452
Query: 403 LDLFGARITDSGAAY-LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 461
L + G D+ + N NL L++ L L L LLN+S N NL
Sbjct: 453 LKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN-NLLF 511
Query: 462 KTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 504
+ L L +L+ S +RI ++ K+L L +
Sbjct: 512 LDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTN 554
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 1e-22
Identities = 81/432 (18%), Positives = 155/432 (35%), Gaps = 36/432 (8%)
Query: 57 SSLLSVDLSGSDVTDSGLI-HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR- 114
+L ++++ + + L + + +NL +D ++ I + L+ L ++
Sbjct: 128 ITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN-YIQTITVNDLQFLRENPQVNLSL 186
Query: 115 --RNNAITAQGMKAFAGLINLVKLDLERCTRI-------HGGLVNLKGLMKLESLNIKWC 165
N I +AF G+ L +L L L L +L K
Sbjct: 187 DMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVH-RLILGEFKDE 244
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFI-LCSMIIRLFCLHV 224
+ + + GL ++ + + D +K +++V + L + I+
Sbjct: 245 RNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVP 304
Query: 225 FLTSLQKLTLLNLEGCPVTAACLDSL----------------SALGSLFYLNLNRCQLSD 268
Q L+++ + L L AL SL YL+L+R LS
Sbjct: 305 KHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSF 364
Query: 269 DGCEKFSKIG--SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLVNLTGL 325
GC +S +G SL+ L+L FN + GL L+ L+ + L
Sbjct: 365 SGCCSYSDLGTNSLRHLDLSFNGAIIMSA-NFMGLEELQHLDFQHSTLKRVTEFSAFLSL 423
Query: 326 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK-LAGLSSLKSLNLDAR 384
L L++S T GLT+L ++ ++ D +L A ++L L+L
Sbjct: 424 EKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC 483
Query: 385 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 444
Q+ +L L L++ + +++ +L +L+ + +
Sbjct: 484 QLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHF 543
Query: 445 LSSLTLLNLSQN 456
SL NL+ N
Sbjct: 544 PKSLAFFNLTNN 555
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 94.3 bits (235), Expect = 1e-20
Identities = 70/364 (19%), Positives = 122/364 (33%), Gaps = 26/364 (7%)
Query: 55 QGSSLLSVDLSGSDVTDSGL-IHLKDCSNLQSLD-----FNFCIQISDGGLEHLRGLSNL 108
QG L + L G+ + + + L++ + L F + + GL ++
Sbjct: 202 QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDV 261
Query: 109 TSLSFRRN-NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC 167
T FR + + F L N+ + L I L ++ K +SL+I
Sbjct: 262 TIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGV-SIKY-LEDVPKHFKWQSLSIIR-CQ 318
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDS----GIAYLKGLSISSVIFILCSMIIRLFCLH 223
+ P L LKSL ++ +K + S + L L +S + + C
Sbjct: 319 LKQF---PTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSR------NALSFSGCCS 369
Query: 224 VFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD-DGCEKFSKIGSLKV 282
L L+L + L L +L+ L F + L
Sbjct: 370 YSDLGTNSLRHLDLSFNGAIIMS-ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLY 428
Query: 283 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN-LTGLCNLKCLELSDTQVGSS 341
L++ + + GLT+L +L + D L N NL L+LS Q+
Sbjct: 429 LDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQI 488
Query: 342 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 401
L L+ +N+S + L SL +L+ +I + L
Sbjct: 489 SWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLA 548
Query: 402 HLDL 405
+L
Sbjct: 549 FFNL 552
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 117 bits (296), Expect = 9e-30
Identities = 65/247 (26%), Positives = 117/247 (47%), Gaps = 19/247 (7%)
Query: 279 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 338
+ + G + +TD V L + +L+ G+ + + L NL LEL D Q+
Sbjct: 20 NAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKDNQI 75
Query: 339 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 398
+ L L LT + + LS + + + +AGL S+K+L+L + QITD + L L+
Sbjct: 76 --TDLAPLKNLTKITELELSGNPLKN--VSAIAGLQSIKTLDLTSTQITD--VTPLAGLS 129
Query: 399 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 458
L L L +IT+ L NL+ L I ++D + + +LS LT L N
Sbjct: 130 NLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD--LTPLANLSKLTTLKADDN-K 184
Query: 459 LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSR 518
++D + ++ L L+ +++ N++I+ + L NL +TL + +T + +
Sbjct: 185 ISD--ISPLASLPNLIEVHLKNNQISD--VSPLANTSNLFIVTLTNQTITNQPVFYNNNL 240
Query: 519 DLPNLVS 525
+PN+V
Sbjct: 241 VVPNVVK 247
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 4e-28
Identities = 74/317 (23%), Positives = 132/317 (41%), Gaps = 47/317 (14%)
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQ 230
+ + P L N + S VTD+ V L
Sbjct: 10 NVIFPDPALANAIKIAAGKSNVTDT----------------------------VTQADLD 41
Query: 231 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 290
+T L+ G VT ++ + L +L L L Q++D + + L L N +
Sbjct: 42 GITTLSAFGTGVTT--IEGVQYLNNLIGLELKDNQITD--LAPLKNLTKITELELSGNPL 97
Query: 291 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 350
+ + + GL ++++L+L S I D + L GL NL+ L L Q+ + + L+GLT
Sbjct: 98 KN--VSAIAGLQSIKTLDLTSTQITD--VTPLAGLSNLQVLYLDLNQI--TNISPLAGLT 151
Query: 351 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 410
NL+ +++ +SD L LA LS L +L D +I+D ++ L SL L + L +I
Sbjct: 152 NLQYLSIGNAQVSD--LTPLANLSKLTTLKADDNKISD--ISPLASLPNLIEVHLKNNQI 207
Query: 411 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 470
+D L N NL + + +T+ + + ++L + N+ + + IS
Sbjct: 208 SDVSP--LANTSNLFIVTLTNQTITN---QPVFYNNNLVVPNVVKGPSGAPIAPATISDN 262
Query: 471 TGLVSLNVSNSRITSAG 487
S N++ + +
Sbjct: 263 GTYASPNLTWNLTSFIN 279
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 86.7 bits (215), Expect = 5e-19
Identities = 56/285 (19%), Positives = 115/285 (40%), Gaps = 51/285 (17%)
Query: 74 LIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL 133
+ +N + ++D L +T+LS +T ++ L NL
Sbjct: 12 IFPDPALANAIKIAAGKS-NVTD--TVTQADLDGITTLSAFGTG-VTT--IEGVQYLNNL 65
Query: 134 VKLDLE--RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191
+ L+L+ + T + LK L K+ L + N + + + ++GL ++K+L ++ ++
Sbjct: 66 IGLELKDNQITDL----APLKNLTKITELEL-SGNPLKN--VSAIAGLQSIKTLDLTSTQ 118
Query: 192 VTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLS 251
+TD ++ L L L +L L+ +T + L+
Sbjct: 119 ITD----------VTP------------------LAGLSNLQVLYLDLNQITN--ISPLA 148
Query: 252 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 311
L +L YL++ Q+SD + + L L N+I+D + L L NL ++L +
Sbjct: 149 GLTNLQYLSIGNAQVSD--LTPLANLSKLTTLKADDNKISD--ISPLASLPNLIEVHLKN 204
Query: 312 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 356
I D + L NL + L++ + + + + + L +
Sbjct: 205 NQISD--VSPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVK 247
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 2e-07
Identities = 38/152 (25%), Positives = 70/152 (46%), Gaps = 13/152 (8%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
S+ ++DL+ + +TD + L SNLQ L + QI++ + L GL+NL LS N
Sbjct: 108 SIKTLDLTSTQITD--VTPLAGLSNLQVLYLDLN-QITN--ISPLAGLTNLQYLSIG-NA 161
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
++ + A L L L + + ++ L L +L SD+ PL+
Sbjct: 162 QVS--DLTPLANLSKLTTLKAD-----DNKISDISPLASLPNLIEVHLKNNQISDVSPLA 214
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLSISSVI 209
+NL + ++ +T+ + Y L + +V+
Sbjct: 215 NTSNLFIVTLTNQTITNQPVFYNNNLVVPNVV 246
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 122 bits (306), Expect = 1e-29
Identities = 65/286 (22%), Positives = 112/286 (39%), Gaps = 44/286 (15%)
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQ 230
+ P + VTD+ V L
Sbjct: 12 KQIFPDDAFAETIKDNLKKKSVTDA----------------------------VTQNELN 43
Query: 231 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 290
+ + + + + + L ++ L LN +L+D + + + +L L L N+I
Sbjct: 44 SIDQIIANNSDIKS--VQGIQYLPNVTKLFLNGNKLTD--IKPLTNLKNLGWLFLDENKI 99
Query: 291 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 350
D L LK L L+SL+L+ GI D + L L L+ L L + ++ + + LS LT
Sbjct: 100 KD--LSSLKDLKKLKSLSLEHNGISD--INGLVHLPQLESLYLGNNKI--TDITVLSRLT 153
Query: 351 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 410
L++++L ISD + LAGL+ L++L L I+D L AL L L L+LF
Sbjct: 154 KLDTLSLEDNQISD--IVPLAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELFSQEC 209
Query: 411 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 456
+ + N +++ G + + I D N+ +
Sbjct: 210 LNKPINHQSNLVVPNTVKNTDG--SLVTPEIISDDGDYEKPNVKWH 253
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 1e-25
Identities = 50/244 (20%), Positives = 95/244 (38%), Gaps = 45/244 (18%)
Query: 280 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 339
+ I + NL + D V L ++ + +++ +
Sbjct: 1 MGETITVSTPIKQ--IFPDDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK 56
Query: 340 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 399
S ++ + L N+ + L+ ++D ++ L L +L L LD +I D L++L L
Sbjct: 57 S--VQGIQYLPNVTKLFLNGNKLTD--IKPLTNLKNLGWLFLDENKIKD--LSSLKDLKK 110
Query: 400 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 459
L L L I+D + + L L L L N +
Sbjct: 111 LKSLSLEHNGISD--------------------------INGLVHLPQLESLYLGNN-KI 143
Query: 460 TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRD 519
TD + ++S LT L +L++ +++I+ + L L L++L L ++ D++ L
Sbjct: 144 TD--ITVLSRLTKLDTLSLEDNQISD--IVPLAGLTKLQNLYLSKNHIS--DLRALAG-- 195
Query: 520 LPNL 523
L NL
Sbjct: 196 LKNL 199
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 102 bits (255), Expect = 3e-23
Identities = 60/253 (23%), Positives = 107/253 (42%), Gaps = 45/253 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+ + +L VTD + + +++ + N I ++ ++ L N+T L N
Sbjct: 21 AETIKDNLKKKSVTD--AVTQNELNSIDQIIANNS-DIKS--VQGIQYLPNVTKLFLNGN 75
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+T +K L NL L L+ +I L +LK L KL+SL+++ N I+ D+ L
Sbjct: 76 K-LT--DIKPLTNLKNLGWLFLDEN-KIK-DLSSLKDLKKLKSLSLE-HNGIS--DINGL 127
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
L L+SL + +K+TD I+ L+ L KL L+
Sbjct: 128 VHLPQLESLYLGNNKITD----------ITV------------------LSRLTKLDTLS 159
Query: 237 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 296
LE ++ + L+ L L L L++ +SD + + +L VL L E ++ +
Sbjct: 160 LEDNQISD--IVPLAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELFSQECLNKPIN 215
Query: 297 HLKGLTNLESLNL 309
H L ++
Sbjct: 216 HQSNLVVPNTVKN 228
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 5e-27
Identities = 49/323 (15%), Positives = 99/323 (30%), Gaps = 50/323 (15%)
Query: 250 LSALGSLFYLNLNRCQLSDDGCEKFSKI-----GSLKVLNLGFNEITDECLVHL-----K 299
S + L+L+ L + + S+ LNL N + + L
Sbjct: 18 TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77
Query: 300 GLTNLESLNLDSCGIGDEGLVNLTGL-----CNLKCLELSDTQVGSSGLRHLSGL----- 349
N+ SLNL + + L + L+L S
Sbjct: 78 IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLP 137
Query: 350 TNLESINLSFTGISDGSLRKLAGL-----SSLKSLNLDARQITDTGLAALTSL-----TG 399
++ S+NL + S +L + +++ SLNL + A L
Sbjct: 138 ASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPAS 197
Query: 400 LTHLDLFGARITDSGAAYL-----RNFKNLRSLEICGGGLTDAGVKHIKDL----SSLTL 450
+T LDL + A L ++ SL +C L ++++K L L
Sbjct: 198 VTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQT 257
Query: 451 LNLSQN--CNLTDKTL----ELISGLTGLVSLNVSNSRITSAGLRHL-----KPLKNLRS 499
+ L + N++ + + ++ ++ + I + + +
Sbjct: 258 VYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADV 317
Query: 500 LTLESCKVTANDIKRLQSRDLPN 522
+L + + + DL
Sbjct: 318 PSLLNQCLIFAQKHQTNIEDLNI 340
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 96.3 bits (240), Expect = 8e-22
Identities = 57/357 (15%), Positives = 111/357 (31%), Gaps = 73/357 (20%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGL-----TNLKSLQISCSKVTDSGIAYLKGLSI 205
+ SL++ N + L ++ SL +S + + L
Sbjct: 18 TSIPHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDEL----- 71
Query: 206 SSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSAL-----GSLFYLN 260
++ + +T LNL G ++ D L ++ L+
Sbjct: 72 -------VQILAAIPA---------NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLD 115
Query: 261 LNRCQLSDDGCEKFSKI-----GSLKVLNLGFNEITDECLVHL-KGL----TNLESLNLD 310
L S +F + S+ LNL N++ + L + L N+ SLNL
Sbjct: 116 LGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLR 175
Query: 311 SCGIGDEGLVNLTGL-----CNLKCLELSDTQVGSSGLRHLSGL-----TNLESINLSFT 360
+ + L ++ L+LS +G L+ + ++ S+NL
Sbjct: 176 GNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLN 235
Query: 361 GISDGSLRKLAGL----SSLKSLNLDARQITDTG-------LAALTSLTGLTHLDLFGAR 409
+ SL L L L+++ LD + + AA ++ + +D G
Sbjct: 236 CLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295
Query: 410 ITDSGAAYLRNF-----KNLRSLEICGGGLTDAG-----VKHIKDLSSLTLLNLSQN 456
I S + + N + L A ++ + L +
Sbjct: 296 IHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCK 352
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 71.3 bits (175), Expect = 1e-13
Identities = 42/325 (12%), Positives = 94/325 (28%), Gaps = 70/325 (21%)
Query: 57 SSLLSVDLSGSDVTDSGLIHL-----KDCSNLQSLDFNFCIQISDGGLEHL-----RGLS 106
+ S+DLS +++ + L +++ SL+ + + + L +
Sbjct: 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPA 80
Query: 107 NLTSLSFRRNNAITAQGMKAFAGLI-----NLVKLDLERCTRIHGGLVNLKGLMK----- 156
N+TSL+ N ++ + + + LDL K
Sbjct: 81 NVTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPAS 139
Query: 157 LESLNIKWCNCITDSDMKPLSGL-----TNLKSLQISCSKVTDSGIAYLKGLSISSVIFI 211
+ SLN+ N + L + N+ SL + + + A L
Sbjct: 140 ITSLNL-RGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAEL----------- 187
Query: 212 LCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSAL-----GSLFYLNLNRCQL 266
+ +T L+L + L+ + + LNL L
Sbjct: 188 ----------AKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCL 237
Query: 267 SDDGCEKFSKIG----SLKVLNLGFN---EITDECLVH----LKGLTNLESLNLDSCGIG 315
E + L+ + L ++ ++ E + + ++ + I
Sbjct: 238 HGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297
Query: 316 DEGLVNLTGL-----CNLKCLELSD 335
+ ++ L L +
Sbjct: 298 PSHSIPISNLIRELSGKADVPSLLN 322
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 1e-07
Identities = 23/144 (15%), Positives = 46/144 (31%), Gaps = 21/144 (14%)
Query: 392 AALTSLTGLTHLDLFGARITDSGAAYL-----RNFKNLRSLEICGGGLTDAGVKHIKDL- 445
+ G+T LDL + L ++ SL + G L + +
Sbjct: 16 EFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQIL 75
Query: 446 ----SSLTLLNLSQNCNLTDKTLELISGL-----TGLVSLNVSNSRITSAGLRHL----- 491
+++T LNLS L+ K+ + + + L++ + +S
Sbjct: 76 AAIPANVTSLNLS-GNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFS 134
Query: 492 KPLKNLRSLTLESCKVTANDIKRL 515
++ SL L + L
Sbjct: 135 NLPASITSLNLRGNDLGIKSSDEL 158
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 7e-07
Identities = 41/282 (14%), Positives = 90/282 (31%), Gaps = 56/282 (19%)
Query: 50 DVIASQGSSLLSVDLSGSDVTDSGLIHL-----KDCSNLQSLDFNFCIQISDGGLEHL-R 103
+A+ ++ +DL +D + +++ SL+ + + L +
Sbjct: 102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGN-DLGIKSSDELIQ 160
Query: 104 GL----SNLTSLSFRRNNAITAQGMKAFAGLI-----NLVKLDLERCTRIHGGLVNL-KG 153
L +N+ SL+ R NN + ++ A + ++ LDL L
Sbjct: 161 ILAAIPANVNSLNLRGNN-LASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYI 219
Query: 154 LM----KLESLNIKWCNCITDSDMKPLSGL----TNLKSLQISCSKVTDSGIAYLKGLSI 205
+ SLN+ NC+ ++ L L +L+++ + V + K L
Sbjct: 220 FSSIPNHVVSLNL-CLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGA 278
Query: 206 SSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSAL-----GSLFYLN 260
+ ++QK+ L++ G + + +S L G +
Sbjct: 279 A-------------------FPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPS 319
Query: 261 LNRCQLSDDGCEKF-----SKIGSLKVLNLGFNEITDECLVH 297
L L + + L+ + + H
Sbjct: 320 LLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPLLEHHHHH 361
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 9e-27
Identities = 45/188 (23%), Positives = 78/188 (41%), Gaps = 15/188 (7%)
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285
+ L +T A ++SL+ Y+ L ++D ++K L +
Sbjct: 22 FKAYLNGLLGQSSTANITEAQMNSLT------YITLANINVTD--LTGIEYAHNIKDLTI 73
Query: 286 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 345
T+ + GL+NLE L + + + + NL+GL +L L++S + S L
Sbjct: 74 NNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTK 131
Query: 346 LSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 404
++ L + SI+LS+ I+D + L L LKSLN+ + D + L L
Sbjct: 132 INTLPKVNSIDLSYNGAITD--IMPLKTLPELKSLNIQFDGVHD--YRGIEDFPKLNQLY 187
Query: 405 LFGARITD 412
F I
Sbjct: 188 AFSQTIGG 195
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 8e-26
Identities = 35/167 (20%), Positives = 67/167 (40%), Gaps = 10/167 (5%)
Query: 347 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 406
+ + +L I L+ ++D L + ++K L ++ T+ ++ L+ L L +
Sbjct: 41 AQMNSLTYITLANINVTD--LTGIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIM 96
Query: 407 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 466
G +T L +L L+I D+ + I L + ++LS N +TD +
Sbjct: 97 GKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD--IMP 154
Query: 467 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 513
+ L L SLN+ + R ++ L L S + K
Sbjct: 155 LKTLPELKSLNIQFDGVHD--YRGIEDFPKLNQLYAFSQTIG--GKK 197
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 88.5 bits (220), Expect = 2e-20
Identities = 43/155 (27%), Positives = 71/155 (45%), Gaps = 9/155 (5%)
Query: 50 DVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLT 109
++ +Q +SL + L+ +VTD L ++ N++ L N ++ + GLSNL
Sbjct: 37 NITEAQMNSLTYITLANINVTD--LTGIEYAHNIKDLTINNI-HATN--YNPISGLSNLE 91
Query: 110 SLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCIT 169
L + +T+ + +GL +L LD+ L + L K+ S+++ + IT
Sbjct: 92 RLRIMGKD-VTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT 150
Query: 170 DSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGL 203
D+ PL L LKSL I V D GI L
Sbjct: 151 --DIMPLKTLPELKSLNIQFDGVHDYRGIEDFPKL 183
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 80.4 bits (199), Expect = 1e-17
Identities = 40/210 (19%), Positives = 74/210 (35%), Gaps = 36/210 (17%)
Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191
+ + + L + + N +TD + + N+K L I+
Sbjct: 21 TFKAYLNGLLGQSSTANITEAQMNSLTYITLANIN-VTD--LTGIEYAHNIKDLTINNIH 77
Query: 192 VTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLS 251
T+ + ++ L L L + G VT+ + +LS
Sbjct: 78 ATN----------YN------------------PISGLSNLERLRIMGKDVTSDKIPNLS 109
Query: 252 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN-EITDECLVHLKGLTNLESLNLD 310
L SL L+++ D K + + + ++L +N ITD ++ LK L L+SLN+
Sbjct: 110 GLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD--IMPLKTLPELKSLNIQ 167
Query: 311 SCGIGDEGLVNLTGLCNLKCLELSDTQVGS 340
G+ D + L L +G
Sbjct: 168 FDGVHD--YRGIEDFPKLNQLYAFSQTIGG 195
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 74.2 bits (183), Expect = 2e-15
Identities = 40/191 (20%), Positives = 71/191 (37%), Gaps = 34/191 (17%)
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
A + +L + L + +L G+ ++ N I ++ P+SGL+NL+ L+
Sbjct: 40 EAQMNSLTYITLANI-----NVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLR 94
Query: 187 ISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAAC 246
I VT I L GL+ LTLL++ +
Sbjct: 95 IMGKDVTSDKIPNLSGLT--------------------------SLTLLDISHSAHDDSI 128
Query: 247 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 306
L ++ L + ++L+ D + LK LN+ F+ + D ++ L
Sbjct: 129 LTKINTLPKVNSIDLSYNGAITD-IMPLKTLPELKSLNIQFDGVHD--YRGIEDFPKLNQ 185
Query: 307 LNLDSCGIGDE 317
L S IG +
Sbjct: 186 LYAFSQTIGGK 196
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 8e-11
Identities = 21/106 (19%), Positives = 45/106 (42%), Gaps = 7/106 (6%)
Query: 420 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 479
+L + + +TD + I+ ++ L ++ + T+ ISGL+ L L +
Sbjct: 42 QMNSLTYITLANINVTD--LTGIEYAHNIKDLTINNI-HATN--YNPISGLSNLERLRIM 96
Query: 480 NSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 525
+TS + +L L +L L + + + ++ LP + S
Sbjct: 97 GKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN--TLPKVNS 140
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 3e-26
Identities = 94/488 (19%), Positives = 164/488 (33%), Gaps = 39/488 (7%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
L +DLS ++ + S+L +L I L GLS+L L
Sbjct: 52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVET 110
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN-LKGLMKLESLNIKWCNCITDSDMKP 175
N + + L L +L++ L L LE L++ N I
Sbjct: 111 N-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS-NKIQSIYCTD 168
Query: 176 LSGLTNLKSL---------QISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFL 226
L L + L ++ + L L++ + L +++ L
Sbjct: 169 LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSL--NVMKTCIQG--L 224
Query: 227 TSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS------DDGCEKFSKIGSL 280
L+ L+ E SAL L L + +L+ DD + F+ + ++
Sbjct: 225 AGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNV 284
Query: 281 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 340
+L I + + L L +C G L L+ T
Sbjct: 285 SSFSLVSVTIER--VKDFSYNFGWQHLELVNCKFG-----QFPTLKLKSLKRLTFTSNKG 337
Query: 341 SGLRHLSGLTNLESINLSFTGISDGSL--RKLAGLSSLKSLNLDARQITDTGLAALTSLT 398
L +LE ++LS G+S + G +SLK L+L + + L
Sbjct: 338 GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS-SNFLGLE 396
Query: 399 GLTHLDLFGARITD-SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 457
L HLD + + S + + +NL L+I A LSSL +L ++ N
Sbjct: 397 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 456
Query: 458 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 517
+ ++ + L L L++S ++ L +L+ L + N+ L +
Sbjct: 457 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH-----NNFFSLDT 511
Query: 518 RDLPNLVS 525
L S
Sbjct: 512 FPYKCLNS 519
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 2e-22
Identities = 88/480 (18%), Positives = 151/480 (31%), Gaps = 47/480 (9%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
+ ++LD +F + G L L R I A+ L +L L L
Sbjct: 28 FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTG 85
Query: 141 CTRIHGGLVN-LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAY 199
I + GL L+ L N + + P+ L LK L ++ + + +
Sbjct: 86 N-PIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPE 143
Query: 200 LKGLSISSVIFILCSMIIRLFCLHVF--LTSLQKLTL-LNLEGCPVTAACLDSLSALGSL 256
+ L S I+ L + L L L+L P+ + + L
Sbjct: 144 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RL 202
Query: 257 FYLNLNRCQLSDDGCEK-FSKIGSLKVLNLGFNEITDECLV------HLKGLTNLESLNL 309
L L S + + + L+V L E +E + L+GL NL
Sbjct: 203 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262
Query: 310 DSCGIGDEGLVN---LTGLCNLKCLELSDTQV-GSSGLRHLSGLTNLESINLSFTGISDG 365
+ L N+ L + + G +LE +N F
Sbjct: 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTL 322
Query: 366 SLRKL----------------AGLSSLKSLNLDARQITDTGL--AALTSLTGLTHLDLFG 407
L+ L L SL+ L+L ++ G + T L +LDL
Sbjct: 323 KLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSF 382
Query: 408 ARITDSGAAYLRNFKNLRSLEICGGGLTDAG-VKHIKDLSSLTLLNLSQNCNLTDKTLEL 466
+ + + L L+ L L +L L++S + +
Sbjct: 383 NGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGI 440
Query: 467 ISGLTGLVSLNVSNSRITSAGLRH-LKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 525
+GL+ L L ++ + L L+NL L L +++L +L S
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ-----CQLEQLSPTAFNSLSS 495
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 82.4 bits (204), Expect = 8e-17
Identities = 71/363 (19%), Positives = 120/363 (33%), Gaps = 28/363 (7%)
Query: 82 NLQSLDFNFC---IQISDGGLEHLRGLS--NLTSLSFRRNNAITAQGMKAFAGLINLV-- 134
L L + + ++ L GL L FR + A GL NL
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260
Query: 135 KLDLERCTRIHGGLVNL-KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
+ L +++L L + S ++ D G +L+ + +
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFP 320
Query: 194 DSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTL----LNLEGCPVTAACLDS 249
+ LK L+ +S + L SL+ L L L+ +GC C S
Sbjct: 321 TLKLKSLKRLTFTSNKGGNAFSEV-------DLPSLEFLDLSRNGLSFKGC-----CSQS 368
Query: 250 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC-LVHLKGLTNLESLN 308
SL YL+L+ + F + L+ L+ + + L NL L+
Sbjct: 369 DFGTTSLKYLDLSFNGVITMS-SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 427
Query: 309 LDSCGIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSFTGISDGSL 367
+ GL +L+ L+++ + + L NL ++LS + S
Sbjct: 428 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 487
Query: 368 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN-FKNLRS 426
LSSL+ LN+ L L LD I S L++ +L
Sbjct: 488 TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAF 547
Query: 427 LEI 429
L +
Sbjct: 548 LNL 550
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 68.9 bits (169), Expect = 2e-12
Identities = 61/261 (23%), Positives = 97/261 (37%), Gaps = 12/261 (4%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S ++L + LK L S+ L L L LS
Sbjct: 301 SYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFL----DLS- 355
Query: 114 RRNNAITAQGM--KAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS 171
N ++ +G ++ G +L LDL + N GL +LE L+ + N S
Sbjct: 356 --RNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHLDFQHSNLKQMS 412
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQK 231
+ L NL L IS + + GLS V+ + + F +F T L+
Sbjct: 413 EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF-TELRN 471
Query: 232 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 291
LT L+L C + + ++L SL LN++ + + SL+VL+ N I
Sbjct: 472 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 531
Query: 292 DECLVHLKGL-TNLESLNLDS 311
L+ ++L LNL
Sbjct: 532 TSKKQELQHFPSSLAFLNLTQ 552
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 4e-26
Identities = 70/317 (22%), Positives = 114/317 (35%), Gaps = 14/317 (4%)
Query: 219 LFCLHVFLTSL-----QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 273
+ C ++ + LL+L + D ++ L L LN +S
Sbjct: 16 VLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGA 75
Query: 274 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 333
F+ + +L+ L L N + L GL+NL L++ I L NLK LE+
Sbjct: 76 FNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEV 135
Query: 334 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 393
D + R SGL +LE + L ++ L+ L L L L I +
Sbjct: 136 GDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYS 195
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 453
L L L++ D+ NL SL I LT ++ L L LNL
Sbjct: 196 FKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNL 255
Query: 454 SQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 513
S N ++ ++ L L + + ++ + L LR L + N +
Sbjct: 256 SYN-PISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSG-----NQLT 309
Query: 514 RLQSR---DLPNLVSFR 527
L+ + NL +
Sbjct: 310 TLEESVFHSVGNLETLI 326
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 107 bits (268), Expect = 5e-25
Identities = 77/329 (23%), Positives = 118/329 (35%), Gaps = 33/329 (10%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
+ + LD +I + +L L N ++A AF L NL L L
Sbjct: 32 TETRLLDLGKN-RIKTLNQDEFASFPHLEELELNENI-VSAVEPGAFNNLFNLRTLGLRS 89
Query: 141 C--TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA 198
I G+ GL L L+I N I L NLKSL++ + +
Sbjct: 90 NRLKLIPLGV--FTGLSNLTKLDISE-NKIVILLDYMFQDLYNLKSLEVGDNDLV----- 141
Query: 199 YLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFY 258
IS F + L L L LE C +T+ ++LS L L
Sbjct: 142 -----YISHRAF----------------SGLNSLEQLTLEKCNLTSIPTEALSHLHGLIV 180
Query: 259 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 318
L L ++ F ++ LKVL + D + NL SL++ C +
Sbjct: 181 LRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVP 240
Query: 319 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 378
+ + L L+ L LS + + L L L+ I L ++ GL+ L+
Sbjct: 241 YLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRV 300
Query: 379 LNLDARQITDTGLAALTSLTGLTHLDLFG 407
LN+ Q+T + S+ L L L
Sbjct: 301 LNVSGNQLTTLEESVFHSVGNLETLILDS 329
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 102 bits (255), Expect = 2e-23
Identities = 61/315 (19%), Positives = 116/315 (36%), Gaps = 27/315 (8%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVF 225
N I + + +L+ L+++ + V+ ++ F
Sbjct: 42 NRIKTLNQDEFASFPHLEELELNENIVS----------AVEPGAF--------------- 76
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285
+L L L L + L + L +L L+++ ++ F + +LK L +
Sbjct: 77 -NNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEV 135
Query: 286 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 345
G N++ GL +LE L L+ C + L+ L L L L + +
Sbjct: 136 GDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYS 195
Query: 346 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 405
L L+ + +S D +L SL++ +T A+ L L L+L
Sbjct: 196 FKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNL 255
Query: 406 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 465
I+ + L L+ +++ GG L + L+ L +LN+S N LT
Sbjct: 256 SYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN-QLTTLEES 314
Query: 466 LISGLTGLVSLNVSN 480
+ + L +L + +
Sbjct: 315 VFHSVGNLETLILDS 329
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 55.9 bits (135), Expect = 2e-08
Identities = 46/214 (21%), Positives = 78/214 (36%), Gaps = 29/214 (13%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
++L+ L C ++ E L L L L R N I A +F L L L++
Sbjct: 152 NSLEQLTLEKC-NLTSIPTEALSHLHGLIVLRLRHLN-INAIRDYSFKRLYRLKVLEISH 209
Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL 200
+ N + L SL+I CN +T + L L+ L +S + ++
Sbjct: 210 WPYLDTMTPNCLYGLNLTSLSITHCN-LTAVPYLAVRHLVYLRFLNLSYNPIS------- 261
Query: 201 KGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 260
+I + L +L + L G + + L L LN
Sbjct: 262 ---TIEGSML----------------HELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLN 302
Query: 261 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 294
++ QL+ F +G+L+ L L N + +C
Sbjct: 303 VSGNQLTTLEESVFHSVGNLETLILDSNPLACDC 336
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 5e-04
Identities = 33/240 (13%), Positives = 70/240 (29%), Gaps = 44/240 (18%)
Query: 13 ELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDS 72
E+ + L ++ L L ++ ++T
Sbjct: 206 EISHWPYLDTMTPNCLYGLNLTSL--------------------------SITHCNLTAV 239
Query: 73 GLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLIN 132
+ ++ L+ L+ ++ IS L L L + + AF GL
Sbjct: 240 PYLAVRHLVYLRFLNLSYN-PISTIEGSMLHELLRLQEIQLVGGQ-LAVVEPYAFRGLNY 297
Query: 133 LVKLDLERC--TRIHGGLVNLKGLMKLESLNIK----WCNCITDSDMKPLSGLTNLKSLQ 186
L L++ T + + + LE+L + C+C + + L
Sbjct: 298 LRVLNVSGNQLTTLEESV--FHSVGNLETLILDSNPLACDC----RLLWV--FRRRWRLN 349
Query: 187 ISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAAC 246
+ + T + +++G +L C + + + EG V C
Sbjct: 350 FNRQQPTCATPEFVQGKEFKDFPDVLLP--NYFTCRRARIRDRKAQQVFVDEGHTVQFVC 407
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 107 bits (268), Expect = 8e-26
Identities = 56/260 (21%), Positives = 101/260 (38%), Gaps = 15/260 (5%)
Query: 259 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 318
L+L L D + G + D+ L ++ ++L + I
Sbjct: 52 LDLTGKNLHPDVTGRLLSQGVIAFRCPRS--FMDQPLAEHFSPFRVQHMDLSNSVIEVST 109
Query: 319 LVNLTGLC-NLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLA-GLSS 375
L + C L+ L L ++ + L+ +NL +NLS +G S+ +L+ L S
Sbjct: 110 LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 169
Query: 376 LKSLNL-DARQITDTGLAALTS--LTGLTHLDLFG--ARITDSGAAYL-RNFKNLRSLEI 429
L LNL T+ + + +T L+L G + S + L R NL L++
Sbjct: 170 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 229
Query: 430 CG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
L + + L+ L L+LS+ ++ +TL + + L +L V + L
Sbjct: 230 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTL 288
Query: 489 RHLKPLKNLRSLTLESCKVT 508
+ L + L L + T
Sbjct: 289 QLL--KEALPHLQINCSHFT 306
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 106 bits (265), Expect = 2e-25
Identities = 56/286 (19%), Positives = 104/286 (36%), Gaps = 14/286 (4%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLE 238
L + +SL + + + G +S + + S ++ ++L
Sbjct: 42 LASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLS 101
Query: 239 GCPVTAACLDSL-SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL-GFNEITDECLV 296
+ + L + S L L+L +LSD +K +L LNL G + ++ L
Sbjct: 102 NSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQ 161
Query: 297 HL-KGLTNLESLNLDSC-GIGDEGLVNLTGLC--NLKCLELSD--TQVGSSGLRHLS-GL 349
L + L+ LNL C ++ + + L LS + S L L
Sbjct: 162 TLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRC 221
Query: 350 TNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFG 407
NL ++LS + + ++ L+ L+ L+L I L L + L L +FG
Sbjct: 222 PNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG 281
Query: 408 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 453
+ D L+ + L L+I T I + + + +
Sbjct: 282 I-VPDGTLQLLK--EALPHLQINCSHFTTIARPTIGNKKNQEIWGI 324
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 2e-23
Identities = 50/259 (19%), Positives = 88/259 (33%), Gaps = 18/259 (6%)
Query: 226 LTSLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF-SKIGSLKVL 283
L ++ L + + +++L+ + S+ L+ L
Sbjct: 64 TGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123
Query: 284 NLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLC-NLKCLELSDT-QVGS 340
+L ++D + L +NL LNL C G + L L C L L LS
Sbjct: 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTE 183
Query: 341 SGLRHL--SGLTNLESINLS--FTGISDGSLRKLA-GLSSLKSLNL-DARQITDTGLAAL 394
++ + +NLS + L L +L L+L D+ + +
Sbjct: 184 KHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF 243
Query: 395 TSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 453
L L HL L I L L++L++ G + D ++ +K+ L +L
Sbjct: 244 FQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVF-GIVPDGTLQLLKE----ALPHL 298
Query: 454 SQNC-NLTDKTLELISGLT 471
NC + T I
Sbjct: 299 QINCSHFTTIARPTIGNKK 317
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 95.7 bits (238), Expect = 8e-22
Identities = 49/292 (16%), Positives = 95/292 (32%), Gaps = 37/292 (12%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
+ R +SQ + + + E F +Q + L + + I SQ S L
Sbjct: 63 VTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLS-NSVIEVSTLHGILSQCSKLQ 121
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAI 119
++ L G ++D + L SNL L+ + C S+ L+ L S L L+
Sbjct: 122 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDF 181
Query: 120 TAQGMKAFA--GLINLVKLDLERCTRI--HGGLVNL-KGLMKLESLNIKWCNCITDSDMK 174
T + ++ + +L+L + L L + L L++ + + +
Sbjct: 182 TEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ 241
Query: 175 PLSGLTNLKSLQIS-CSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLT 233
L L+ L +S C + + L + L
Sbjct: 242 EFFQLNYLQHLSLSRCYDIIPETLLE--------------------------LGEIPTLK 275
Query: 234 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285
L + G V L L +L +L +N + + ++ +
Sbjct: 276 TLQVFGI-VPDGTLQLLKE--ALPHLQINCSHFTTIARPTIGNKKNQEIWGI 324
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 85.3 bits (211), Expect = 2e-18
Identities = 52/358 (14%), Positives = 100/358 (27%), Gaps = 82/358 (22%)
Query: 4 RDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVD 63
++ + + Q + + P + +D
Sbjct: 40 YRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMD 99
Query: 64 LSGSDVTDSGLI-HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQ 122
LS S + S L L CS LQ+L ++SD + L SNL L+ + +
Sbjct: 100 LSNSVIEVSTLHGILSQCSKLQNLSLEGL-RLSDPIVNTLAKNSNLVRLNLSGCSGFSEF 158
Query: 123 GMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL--SGLT 180
++ +L+ LN+ WC T+ ++
Sbjct: 159 ALQTLL-----------------------SSCSRLDELNLSWCFDFTEKHVQVAVAHVSE 195
Query: 181 NLKSLQIS--CSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLE 238
+ L +S + S ++ L + L L+L
Sbjct: 196 TITQLNLSGYRKNLQKSDLSTL-------------------------VRRCPNLVHLDLS 230
Query: 239 GCP-VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 297
+ C L L +L+L+RC +I E L+
Sbjct: 231 DSVMLKNDCFQEFFQLNYLQHLSLSRC-----------------------YDIIPETLLE 267
Query: 298 LKGLTNLESLNLDSCGIGDEGLVNLTGLC---NLKCLELSDTQVGSSGLRHLSGLTNL 352
L + L++L + + D L L + C + + G + + +
Sbjct: 268 LGEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQINCSHFTTIARPTIGNKKNQEIWGI 324
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 72.6 bits (178), Expect = 4e-14
Identities = 36/192 (18%), Positives = 65/192 (33%), Gaps = 32/192 (16%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLL-SVDLSG--SDVTDSGLIHL-KDCSNLQSLDF 88
L +L L +K + V + S + ++LSG ++ S L L + C NL LD
Sbjct: 170 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 229
Query: 89 NFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGL 148
+ + + + + L+ L LS R I + + + L L +
Sbjct: 230 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQV---------- 279
Query: 149 VNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSV 208
+ D ++ L L LQI+CS T + +
Sbjct: 280 ----------------FGIVPDGTLQLLK--EALPHLQINCSHFTTIARPTIGNKKNQEI 321
Query: 209 IFILCSMIIRLF 220
I C + ++
Sbjct: 322 WGIKCRLTLQKP 333
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 45.3 bits (107), Expect = 2e-05
Identities = 20/96 (20%), Positives = 37/96 (38%), Gaps = 4/96 (4%)
Query: 430 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE-LISGLTGLVSLNVSNSRITSAGL 488
C D + + ++LS N + TL ++S + L +L++ R++ +
Sbjct: 77 CPRSFMDQPLAEHFSPFRVQHMDLS-NSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIV 135
Query: 489 RHLKPLKNLRSLTLESC-KVTANDIKRLQSRDLPNL 523
L NL L L C + ++ L S L
Sbjct: 136 NTLAKNSNLVRLNLSGCSGFSEFALQTLLSS-CSRL 170
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 4e-24
Identities = 52/232 (22%), Positives = 94/232 (40%), Gaps = 23/232 (9%)
Query: 280 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 339
NL +TD V L +++ + ++ I + + L N+ L L+ ++
Sbjct: 26 TIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIKS--VQGIQYLPNVTKLFLNGNKLT 81
Query: 340 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 399
++ L+ L NL + L + D L L L LKSL+L+ I+D + L L
Sbjct: 82 D--IKPLANLKNLGWLFLDENKVKD--LSSLKDLKKLKSLSLEHNGISD--INGLVHLPQ 135
Query: 400 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 459
L L L +ITD L L +L + ++D + + L+ L L LS+N ++
Sbjct: 136 LESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISD--IVPLAGLTKLQNLYLSKN-HI 190
Query: 460 TDKTLELISGLTG---LVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 508
+D + L G L L + + + + H L ++ +
Sbjct: 191 SD-----LRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV 237
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 98.6 bits (246), Expect = 4e-23
Identities = 61/246 (24%), Positives = 103/246 (41%), Gaps = 26/246 (10%)
Query: 171 SDMKPLSGLTNLKSLQISCSKVTD----SGIAYLKGLSISSVIFILCSMIIRLFCLHVFL 226
+ + VTD + + + + ++ S I + +
Sbjct: 15 KQIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANN------SDIKSVQGIQ--- 65
Query: 227 TSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 286
L +T L L G +T + L+ L +L +L L+ ++ D + LK L+L
Sbjct: 66 -YLPNVTKLFLNGNKLTD--IKPLANLKNLGWLFLDENKVKD--LSSLKDLKKLKSLSLE 120
Query: 287 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 346
N I+D + L L LESL L + I D + L+ L L L L D Q+ S + L
Sbjct: 121 HNGISD--INGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQI--SDIVPL 174
Query: 347 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 406
+GLT L+++ LS ISD LR LAGL +L L L +++ + + ++L +
Sbjct: 175 AGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNT 232
Query: 407 GARITD 412
+
Sbjct: 233 DGSLVT 238
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 90.5 bits (225), Expect = 2e-20
Identities = 50/236 (21%), Positives = 95/236 (40%), Gaps = 45/236 (19%)
Query: 288 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 347
I + NL + D V L ++ + +++ + S ++ +
Sbjct: 12 TPIKQ--IFSDDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIKS--VQGIQ 65
Query: 348 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 407
L N+ + L+ ++D ++ LA L +L L LD ++ D L++L L L L L
Sbjct: 66 YLPNVTKLFLNGNKLTD--IKPLANLKNLGWLFLDENKVKD--LSSLKDLKKLKSLSLEH 121
Query: 408 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 467
I+D + + L L L L N +TD + ++
Sbjct: 122 NGISD--------------------------INGLVHLPQLESLYLGNN-KITD--ITVL 152
Query: 468 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 523
S LT L +L++ +++I+ + L L L++L L ++ D++ L L NL
Sbjct: 153 SRLTKLDTLSLEDNQISD--IVPLAGLTKLQNLYLSKNHIS--DLRALA--GLKNL 202
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 86.6 bits (215), Expect = 4e-19
Identities = 59/268 (22%), Positives = 105/268 (39%), Gaps = 28/268 (10%)
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMK 156
+ + + ++ + +T L ++ ++ + G ++ L
Sbjct: 17 IFSDDAFAETIKDNLKKKS-VT--DAVTQNELNSIDQIIANNSDIKSVQG----IQYLPN 69
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLSISSVIFILCSM 215
+ L + N +TD +KPL+ L NL L + +KV D S + LK L L
Sbjct: 70 VTKLFL-NGNKLTD--IKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKS----LSLEHN 122
Query: 216 IIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 275
I L L +L L L +T + LS L L L+L Q+SD +
Sbjct: 123 GISDIN---GLVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQISD--IVPLA 175
Query: 276 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 335
+ L+ L L N I+D L L GL NL+ L L S ++ + + + L ++ +D
Sbjct: 176 GLTKLQNLYLSKNHISD--LRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTD 233
Query: 336 TQVGSSGLRHLSGLTNLESINLSFTGIS 363
+ + +S + E N+ +
Sbjct: 234 GSLVT--PEIISDDGDYEKPNVKWHLPE 259
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 83.6 bits (207), Expect = 5e-18
Identities = 63/274 (22%), Positives = 114/274 (41%), Gaps = 46/274 (16%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+ + +L VTD + + +++ + N I ++ ++ L N+T L N
Sbjct: 24 AETIKDNLKKKSVTD--AVTQNELNSIDQIIANNS-DIKS--VQGIQYLPNVTKLFLNGN 78
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+T +K A L NL L L+ ++ L +LK L KL+SL+++ N I+ D+ L
Sbjct: 79 K-LTD--IKPLANLKNLGWLFLDEN-KVK-DLSSLKDLKKLKSLSLEH-NGIS--DINGL 130
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
L L+SL + +K+TD I+ L+ L KL L+
Sbjct: 131 VHLPQLESLYLGNNKITD----------ITV------------------LSRLTKLDTLS 162
Query: 237 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 296
LE ++ + L+ L L L L++ +SD + + +L VL L E ++ +
Sbjct: 163 LEDNQISD--IVPLAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELFSQECLNKPIN 218
Query: 297 HLKGLTNLESL-NLDSCGIGDEGLVNLTGLCNLK 329
H L ++ N D + E + +
Sbjct: 219 HQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPN 252
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 6e-24
Identities = 93/466 (19%), Positives = 173/466 (37%), Gaps = 32/466 (6%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
S L ++ L+G+ + L S+LQ L ++ + L L L+ N
Sbjct: 76 SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHN 134
Query: 117 NAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLESLNIKW---CNCITDS 171
+ + + F+ L NL LDL I+ +L+ L ++ LN+ N +
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT--DLRVLHQMPLLNLSLDLSLNPMNFI 192
Query: 172 DMKPLSGLTNLKSLQISCSK----VTDSGIAYLKGLSISSVIFILCSMIIRLFCLHV-FL 226
+ L L + + V + I L GL + ++ L L
Sbjct: 193 QPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL 251
Query: 227 TSLQKLTLLNLEGCPVTAACL---DSLSALGSLFYLNLNRCQLSD-DGCEKFSKIGSLKV 282
L LT+ + D + L ++ +L + L++
Sbjct: 252 EGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLEL 311
Query: 283 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 342
+N F + L +L+ L S G+ + L +L+ L+LS + G
Sbjct: 312 VNCKFGQFPTL------KLKSLKRLTFTSNKGGN--AFSEVDLPSLEFLDLSRNGLSFKG 363
Query: 343 LRHLS--GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG-LAALTSLTG 399
S G T+L+ ++LSF G+ S GL L+ L+ + + SL
Sbjct: 364 CCSQSDFGTTSLKYLDLSFNGVITMS-SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 422
Query: 400 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI-KDLSSLTLLNLSQNCN 458
L +LD+ + +L L++ G + + I +L +LT L+LSQ
Sbjct: 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-Q 481
Query: 459 LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 504
L + + L+ L LN++++++ S L +L+ + L +
Sbjct: 482 LEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHT 527
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 1e-22
Identities = 90/487 (18%), Positives = 155/487 (31%), Gaps = 61/487 (12%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
+ ++LD +F + G L L R I A+ L +L L L
Sbjct: 28 FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTG 85
Query: 141 C--TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD---- 194
+ G GL L+ L N + + P+ L LK L ++ + +
Sbjct: 86 NPIQSLALGA--FSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLP 142
Query: 195 ---SGIAYLKGLSISS-VIFILCSMIIRLFCLHVFLTSLQKLTL-LNLEGCPVTAACLDS 249
S + L+ L +SS I + +R L + L L L+L P+ +
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQSIYCTDLR------VLHQMPLLNLSLDLSLNPMNFIQPGA 196
Query: 250 LSALGSLFYLNLNRCQLSDDGCEK-FSKIGSLKVLNL------GFNEITDECLVHLKGLT 302
+ L L L S + + + L+V L + L+GL
Sbjct: 197 FKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLC 255
Query: 303 NLESLNLDSCGIGDEGLVN---LTGLCNLKCLELSDTQVGS-SGLRHLSGLTNLESINLS 358
NL + L N+ L + + G +LE +N
Sbjct: 256 NLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCK 315
Query: 359 FTGISDGSLRKL----------------AGLSSLKSLNLDARQITDTGL--AALTSLTGL 400
F L+ L L SL+ L+L ++ G + T L
Sbjct: 316 FGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSL 375
Query: 401 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD-AGVKHIKDLSSLTLLNLSQNCNL 459
+LDL + + + L L+ L + L +L L++S +
Sbjct: 376 KYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HT 433
Query: 460 TDKTLELISGLTGLVSLNVSNSRITSAGLRH-LKPLKNLRSLTLESCKVTANDIKRLQSR 518
+ +GL+ L L ++ + L L+NL L L +++L
Sbjct: 434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ-----CQLEQLSPT 488
Query: 519 DLPNLVS 525
+L S
Sbjct: 489 AFNSLSS 495
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 4e-12
Identities = 64/351 (18%), Positives = 125/351 (35%), Gaps = 25/351 (7%)
Query: 20 LTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKD 79
+ + AF++ L L L + I + L L + + G + D
Sbjct: 189 MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGL-AGLEVHRLVLGEFRNEGNLEKFD 247
Query: 80 CS--------NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI 131
S ++ + D ++ L+N++S S + +K F+
Sbjct: 248 KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI---ERVKDFSYNF 304
Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191
L+L C + LK L +L + K + L +L+ L +S +
Sbjct: 305 GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKG------GNAFSEVDLPSLEFLDLSRNG 358
Query: 192 VTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLS 251
++ G +S+ ++ S + + L++L L+ + + + S
Sbjct: 359 LSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHLDFQHSNLKQ--MSEFS 415
Query: 252 A---LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH-LKGLTNLESL 307
L +L YL+++ F+ + SL+VL + N + L L NL L
Sbjct: 416 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 475
Query: 308 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 358
+L C + L +L+ L ++ Q+ S LT+L+ I L
Sbjct: 476 DLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLH 526
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 3e-07
Identities = 55/216 (25%), Positives = 85/216 (39%), Gaps = 8/216 (3%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMK--AFAGLINLVKLDL 138
+L+ L F G L +L L RN ++ +G + G +L LDL
Sbjct: 325 KSLKRLTFT---SNKGGNAFSEVDLPSLEFLDLSRNG-LSFKGCCSQSDFGTTSLKYLDL 380
Query: 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA 198
+ N GL +LE L+ + N S+ L NL L IS + +
Sbjct: 381 SFN-GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 439
Query: 199 YLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFY 258
GLS V+ + + F +F T L+ LT L+L C + + ++L SL
Sbjct: 440 IFNGLSSLEVLKMAGNSFQENFLPDIF-TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 498
Query: 259 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 294
LN+ QL F ++ SL+ + L N C
Sbjct: 499 LNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 534
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372 | Back alignment and structure |
|---|
Score = 98.2 bits (245), Expect = 2e-22
Identities = 55/306 (17%), Positives = 103/306 (33%), Gaps = 52/306 (16%)
Query: 250 LSALGSLFYLNLNRCQLSDDGCEKFSKI-----GSLKVLNLGFNEITDECLVHL-KGLTN 303
L SL LNL +++ C + + +L +NL ++ L L
Sbjct: 68 AEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLR 127
Query: 304 LESLNLDSCGIGDEGLVNLTGL-----CNLKCLELSDTQVGSSGLRHLS-GL---TNLES 354
L L +G E +L L C + L LS+ + ++G+ L GL T++
Sbjct: 128 ARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTH 187
Query: 355 INLSFTGISDGSLRKLAGL----SSLKSLNLDARQITDTGLAALTSL----TGLTHLDLF 406
++L TG+ D L LA L+ LN+ DT AL L L L+
Sbjct: 188 LSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLY 247
Query: 407 GARITDSGAAYL-------RNFKNLRSLEICGGGLTDAGVKHI----KDLSSLTLLNLSQ 455
++ G L + G +++ + ++L+S + +
Sbjct: 248 FNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLNSWDRARVQR 307
Query: 456 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGL----RHLKPLKNLRSLTLESCKVTAND 511
+ L ++ +SR + + L+ +R+L + +
Sbjct: 308 HLELL--------------LRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSSGSPS 353
Query: 512 IKRLQS 517
Sbjct: 354 GSWSHP 359
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372 | Back alignment and structure |
|---|
Score = 97.1 bits (242), Expect = 4e-22
Identities = 65/379 (17%), Positives = 122/379 (32%), Gaps = 68/379 (17%)
Query: 108 LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC 167
L L N A+ AQ + NL L+ + + G + + L E L+ + +
Sbjct: 3 LVGLLSAHNRAVLAQ---LGCPIKNLDALENAQAIKKKLGKLGRQVLPPSELLDHLFFHY 59
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLT 227
+ L++L+ L ++ ++T + +++ +
Sbjct: 60 EFQNQRFSAEVLSSLRQLNLAGVRMTPVKCTVV------------AAVL---------GS 98
Query: 228 SLQKLTLLNLEGCPVTAACLDSL-SALGSLFYLNLNRCQLSDDGCEKFSKI-----GSLK 281
L +NL C + A L +L L L L + C+ + +
Sbjct: 99 GRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQIT 158
Query: 282 VLNLGFNEITDECLVH----LKGLTNLESLNLDSCGIGDEGLVN----LTGLCNLKCLEL 333
L L N +T + L G T++ L+L G+GDEGL L L+ L +
Sbjct: 159 TLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNV 218
Query: 334 SDTQVGSSGLRHLSGL----TNLESINLSFTGISDGSLRKLA-------GLSSLKSLNLD 382
+ G + L+ +LE ++L F +S + L G + + +
Sbjct: 219 AYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTE 278
Query: 383 ARQITDTGLAALTSL---------------TGLTHLDLFGARITDSGAAY----LRNFKN 423
+++ L+ + L DL +R LR
Sbjct: 279 GTAVSEYWSVILSEVQRNLNSWDRARVQRHLELLLRDLEDSRGATLNPWRKAQLLRVEGE 338
Query: 424 LRSLEICGGGLTDAGVKHI 442
+R+L G
Sbjct: 339 VRALLEQLGSSGSPSGSWS 357
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372 | Back alignment and structure |
|---|
Score = 82.1 bits (203), Expect = 4e-17
Identities = 56/361 (15%), Positives = 110/361 (30%), Gaps = 69/361 (19%)
Query: 78 KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI-----N 132
+ + LD F LS+L L+ +T A ++
Sbjct: 44 QVLPPSELLDHLFFHYEFQNQRFSAEVLSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHA 102
Query: 133 LVKLDLERCTRIHGGLVNL-KGLMKLESLNIKWCNCITDSDMKPLSGL-----TNLKSLQ 186
L +++L C GL L ++ L ++ + + K L L + +L+
Sbjct: 103 LDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS-LGPEACKDLRDLLLHDQCQITTLR 161
Query: 187 ISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAAC 246
+S + +T +G+A L L +T L+L +
Sbjct: 162 LSNNPLTAAGVAV------------LMEG----------LAGNTSVTHLSLLHTGLGDEG 199
Query: 247 LDSLSAL----GSLFYLNLNRCQLSDDGCEKFSKI----GSLKVLNLGFNEITD------ 292
L+ L+A L LN+ D ++ SL++L+L FNE++
Sbjct: 200 LELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVL 259
Query: 293 -ECLVHLKGLTNLESLNLDSCGIGDEGLVNLT-GLCNLKCLELSDTQVGSSGLRHLSGLT 350
+ +G + + + + V L+ NL + + Q
Sbjct: 260 RDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLNSWDRARVQRH----------L 309
Query: 351 NLESINLSFTGISDGSLRKLAGL----SSLKSLNLDARQITDTG----LAALTSLTGLTH 402
L +L + + + + A L +++L G H
Sbjct: 310 ELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSSGSPSGSWSHPQFEKGAGHHH 369
Query: 403 L 403
Sbjct: 370 H 370
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 8e-10
Identities = 39/306 (12%), Positives = 89/306 (29%), Gaps = 69/306 (22%)
Query: 30 DCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHL-----KDCSNLQ 84
AL ++ L ++ + + + L + + L D +
Sbjct: 100 RHALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQIT 158
Query: 85 SLDFNFCIQISDGGLEHL-RGLS---NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
+L + ++ G+ L GL+ ++T LS + + +G++ A
Sbjct: 159 TLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSL-LHTGLGDEGLELLAAQ---------- 206
Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL----TNLKSLQISCSKVTDSG 196
L +L+ LN+ N D+ L+ +L+ L + ++++ G
Sbjct: 207 ----------LDRNRQLQELNV-AYNGAGDTAALALARAAREHPSLELLHLYFNELSSEG 255
Query: 197 IAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSL 256
L+ L + ++ + EG V+ LS +
Sbjct: 256 RQVLRDLGGA-------------------AEGGARVVVSLTEGTAVSEYWSVILSEV--- 293
Query: 257 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH----LKGLTNLESLNLDSC 312
D + + L + +L + L+ + +L
Sbjct: 294 ----QRNLNSWDRA--RVQRHLELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLG 347
Query: 313 GIGDEG 318
G
Sbjct: 348 SSGSPS 353
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 99.8 bits (249), Expect = 2e-22
Identities = 73/455 (16%), Positives = 160/455 (35%), Gaps = 29/455 (6%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
SL +DLS + ++ S+L+ L+ + G L+NL +L
Sbjct: 74 GSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNV 133
Query: 117 NAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
+ FAGL +L +L+++ LK + + L +
Sbjct: 134 ETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS--LKSIRDIHHLTLHLSE-SAFLLEI 190
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTL 234
L++++ L++ + + + L +SS + L L S +L
Sbjct: 191 FADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDE-----SFNELLK 245
Query: 235 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 294
L ++ D + L L N + + + + +++ L++ + +
Sbjct: 246 LLRYILELSEVEFDDCT-LNGLGDFNPSESDVVSEL--GKVETVTIRRLHIPQFYLFYDL 302
Query: 295 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH---LSGLTN 351
L ++ + +++ + L +L+ L+LS+ + L++ +
Sbjct: 303 STVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPS 362
Query: 352 LESINLSFTGISD--GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 409
L+++ LS + + L L +L SL++ + + L+L
Sbjct: 363 LQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTG 421
Query: 410 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 469
I + L L++ L + L L L +S+N L TL S
Sbjct: 422 IRVVKTCI---PQTLEVLDVSNNNLDSFSL----FLPRLQELYISRN-KLK--TLPDASL 471
Query: 470 LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 504
L+ + +S +++ S L +L+ + L +
Sbjct: 472 FPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHT 506
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 95.9 bits (239), Expect = 4e-21
Identities = 71/426 (16%), Positives = 142/426 (33%), Gaps = 42/426 (9%)
Query: 57 SSLLSVDLSG---SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
SSL ++L G + + L + +NLQ+L S+ GL++L L
Sbjct: 98 SSLKYLNLMGNPYQTLGVTSLFP--NLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEI 155
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK--WCNCITDS 171
+ + + ++ + ++ L L + L + L ++ S
Sbjct: 156 KALS-LRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFS 214
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL-----SISSVIFILCSM---------II 217
+ + +K L S +TD L L +S V F C++
Sbjct: 215 PLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSES 274
Query: 218 RLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 277
+ + ++ + L++ + S L + + + ++ C +
Sbjct: 275 DVVSELGKVETVT-IRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHL 333
Query: 278 GSLKVLNLGFNEITDECLVH---LKGLTNLESLNLDSCGIGDEGLVN--LTGLCNLKCLE 332
SL+ L+L N + +E L + +L++L L + L L NL L+
Sbjct: 334 KSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLD 393
Query: 333 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 392
+S + +NLS TGI ++ +L+ L++ +
Sbjct: 394 ISRNTFHPMP-DSCQWPEKMRFLNLSSTGIR--VVKT-CIPQTLEVLDVSNNNLDSFS-- 447
Query: 393 ALTSLTGLTHLDLFGARIT--DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 450
L L L + ++ + F L ++I L L+SL
Sbjct: 448 --LFLPRLQELYISRNKLKTLPDAS----LFPVLLVMKISRNQLKSVPDGIFDRLTSLQK 501
Query: 451 LNLSQN 456
+ L N
Sbjct: 502 IWLHTN 507
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 95.2 bits (237), Expect = 6e-21
Identities = 74/445 (16%), Positives = 149/445 (33%), Gaps = 62/445 (13%)
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLESLNI 162
+ + SL N IT G NL L L+ I G L LE L++
Sbjct: 25 TAAMKSLDLSFNK-ITYIGHGDLRACANLQVLILKSSRINTIEGDA--FYSLGSLEHLDL 81
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCL 222
N ++ L++LK L L G ++ +
Sbjct: 82 SD-NHLSSLSSSWFGPLSSLKYL-------------NLMGNPYQTLG------------V 115
Query: 223 HVFLTSLQKLTLLNLEGCPVTAACL-DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 281
+L L L + + + L SL L + L + + I +
Sbjct: 116 TSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIH 175
Query: 282 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS- 340
L L +E + L+++ L L + L ++ +
Sbjct: 176 HLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVL 235
Query: 341 ---------SGLRHLSGLTNLESINLSFTGI---SDGSLRKLAGLSSLKSLNLDARQITD 388
LR++ L+ +E + + G+ + ++ L ++++ + I
Sbjct: 236 TDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQ 295
Query: 389 TGL-----AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH-- 441
L + L + + + +++ ++ ++ K+L L++ + + +K+
Sbjct: 296 FYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSA 355
Query: 442 -IKDLSSLTLLNLSQNCNLTD--KTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLR 498
SL L LSQN +L KT E++ L L SL++S + + + +R
Sbjct: 356 CKGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISRNTFHPMP-DSCQWPEKMR 413
Query: 499 SLTLESCKVTANDIKRLQSRDLPNL 523
L L S I+ +++ L
Sbjct: 414 FLNLSS-----TGIRVVKTCIPQTL 433
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 79.4 bits (196), Expect = 7e-16
Identities = 49/290 (16%), Positives = 100/290 (34%), Gaps = 20/290 (6%)
Query: 255 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 314
++ L+L+ +++ G +L+VL L + I L +LE L+L +
Sbjct: 27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL 86
Query: 315 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL-SGLTNLESINLS----FTGISDGSLRK 369
L +LK L L + G+ L LTNL+++ + F+ I
Sbjct: 87 SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFA- 145
Query: 370 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 429
GL+SL L + A + + +L S+ + HL L + + ++R LE+
Sbjct: 146 --GLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLEL 203
Query: 430 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT---------DKTLELISGLTGLVSLNVSN 480
L + + + K L I L+ + + +
Sbjct: 204 RDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTL 263
Query: 481 SRITS---AGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 527
+ + + + L + ++T+ + + S L +
Sbjct: 264 NGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVK 313
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 94.3 bits (235), Expect = 7e-22
Identities = 51/240 (21%), Positives = 88/240 (36%), Gaps = 30/240 (12%)
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285
L NL VT L S L + N + + +LK L+L
Sbjct: 15 DPGLANAVKQNLGKQSVTD--LVSQKELSGVQNFNGDNSNIQS--LAGMQFFTNLKELHL 70
Query: 286 GFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLR 344
N+I+D L LK LT LE L+++ + + G+ + L L L + ++
Sbjct: 71 SHNQISD--LSPLKDLTKLEELSVNRNRLKNLNGIPSA----CLSRLFLDNNEL--RDTD 122
Query: 345 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 404
L L NLE +++ + + L LS L+ L+L +IT+ LT L + +D
Sbjct: 123 SLIHLKNLEILSIRNNKLKS--IVMLGFLSKLEVLDLHGNEITN--TGGLTRLKKVNWID 178
Query: 405 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 464
L G + + Y ++ D ++ +S + D +
Sbjct: 179 LTGQKCVNEPVKYQPELYITNTV-------------KDPDGRWISPYYISNGGSYVDGCV 225
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 92.8 bits (231), Expect = 2e-21
Identities = 49/237 (20%), Positives = 89/237 (37%), Gaps = 42/237 (17%)
Query: 288 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 347
I + GL N NL + D LV+ L ++ ++ + S L +
Sbjct: 7 TPINQ--VFPDPGLANAVKQNLGKQSVTD--LVSQKELSGVQNFNGDNSNIQS--LAGMQ 60
Query: 348 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 407
TNL+ ++LS ISD L L L+ L+ L+++ ++ + L + S L+ L L
Sbjct: 61 FFTNLKELHLSHNQISD--LSPLKDLTKLEELSVNRNRLKN--LNGIPSAC-LSRLFLDN 115
Query: 408 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 467
+ D + L +L +L++ N L + ++
Sbjct: 116 NELRD--------------------------TDSLIHLKNLEILSIRNN-KLKS--IVML 146
Query: 468 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLV 524
L+ L L++ + IT+ L LK + + L K +K + N V
Sbjct: 147 GFLSKLEVLDLHGNEITN--TGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTV 201
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 71.2 bits (175), Expect = 6e-14
Identities = 45/272 (16%), Positives = 98/272 (36%), Gaps = 47/272 (17%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
I+ + GL+N + + + +T + + L + + + + I L ++
Sbjct: 8 PINQ--VFPDPGLANAVKQNLGKQS-VTD--LVSQKELSGVQNFNGD-NSNIQS-LAGMQ 60
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFIL 212
L+ L++ N I+D + PL LT L+ L ++ +++ + + +
Sbjct: 61 FFTNLKELHL-SHNQISD--LSPLKDLTKLEELSVNRNRLKN--LNGIPSA--------- 106
Query: 213 CSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 272
L+ L L+ + DSL L +L L++ +L
Sbjct: 107 ------------------CLSRLFLDNNELR--DTDSLIHLKNLEILSIRNNKLKSI--V 144
Query: 273 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 332
+ L+VL+L NEIT+ L L + ++L +E + L ++
Sbjct: 145 MLGFLSKLEVLDLHGNEITN--TGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVK 202
Query: 333 LSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
D + S ++S + + +
Sbjct: 203 DPDGRWIS--PYYISNGGSYVDGCVLWELPVY 232
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 66.6 bits (163), Expect = 2e-12
Identities = 47/252 (18%), Positives = 91/252 (36%), Gaps = 49/252 (19%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++ + +L VTD L+ K+ S +Q+ + + I L ++ +NL L +
Sbjct: 19 ANAVKQNLGKQSVTD--LVSQKELSGVQNFNGDNS-NIQS--LAGMQFFTNLKELHL-SH 72
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGL--MKLESLNIKWCNCITDSDMK 174
N I+ + L L +L + R L NL G+ L L + N + D
Sbjct: 73 NQISD--LSPLKDLTKLEELSVNRN-----RLKNLNGIPSACLSRLFLDN-NELR--DTD 122
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTL 234
L L NL+ L I +K+ + L L KL +
Sbjct: 123 SLIHLKNLEILSIRNNKLKS-----IVMLG-----------------------FLSKLEV 154
Query: 235 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL-KVLNLGFNEITDE 293
L+L G +T L+ L + +++L + ++ + ++ V + I+
Sbjct: 155 LDLHGNEIT--NTGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWISPY 212
Query: 294 CLVHLKGLTNLE 305
+ + +
Sbjct: 213 YISNGGSYVDGC 224
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 94.8 bits (236), Expect = 3e-21
Identities = 52/269 (19%), Positives = 86/269 (31%), Gaps = 53/269 (19%)
Query: 279 SLKVLNLGFNEITDECLVH----LKGLTNLESLNLDSCGIGDEGLVN----LTGLCNLKC 330
S++ +L + IT E L +++ + L IG E + +L+
Sbjct: 5 SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 64
Query: 331 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 390
E SD G L L L+ L L ++ L T
Sbjct: 65 AEFSDIFTGRVKDEIPEALRLL--------------LQALLKCPKLHTVRLSDNAFGPTA 110
Query: 391 LAALTSL----TGLTHLDLFGARITDSGAAYL-------------RNFKNLRSLEICGGG 433
L T L HL L + A + +N LRS+
Sbjct: 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170
Query: 434 LTDAGVKHI----KDLSSLTLLNLSQNCNLTDKTL-----ELISGLTGLVSLNVSNSRIT 484
L + +K + L + + QN + + + E ++ L L++ ++ T
Sbjct: 171 LENGSMKEWAKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT 229
Query: 485 SAGLRH----LKPLKNLRSLTLESCKVTA 509
G LK NLR L L C ++A
Sbjct: 230 HLGSSALAIALKSWPNLRELGLNDCLLSA 258
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 92.9 bits (231), Expect = 1e-20
Identities = 46/343 (13%), Positives = 100/343 (29%), Gaps = 66/343 (19%)
Query: 58 SLLSVDLSGSDVTDSGLIH----LKDCSNLQSLDFNFCIQISDGGLEH----LRGLSNLT 109
S+ L +T L + +++ + + I + +L
Sbjct: 5 SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLE 63
Query: 110 SLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCIT 169
F + + L L++ L KL ++ + N
Sbjct: 64 IAEFS-DIFTGRVKDEIPEALRLLLQA--------------LLKCPKLHTVRL-SDNAFG 107
Query: 170 DSDMKPLSGL----TNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVF 225
+ +PL T L+ L + + + A + + ++ ++
Sbjct: 108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKI-------------ARALQELAVNKK 154
Query: 226 LTSLQKLTLLNLEGCPVTAACL----DSLSALGSLFYLNLNRCQLSDDGCEK-----FSK 276
+ L + + + + + L + + + + +G E +
Sbjct: 155 AKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAY 214
Query: 277 IGSLKVLNLGFNEITDECLVH----LKGLTNLESLNLDSCGIGDEGLVNL------TGLC 326
LKVL+L N T LK NL L L+ C + G +
Sbjct: 215 CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENI 274
Query: 327 NLKCLELSDTQVGSSGLRHL-----SGLTNLESINLSFTGISD 364
L+ L L ++ +R L + +L + L+ S+
Sbjct: 275 GLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 85.5 bits (212), Expect = 3e-18
Identities = 52/315 (16%), Positives = 95/315 (30%), Gaps = 74/315 (23%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIH----LKDCSNLQSLDFNFCIQISDGGLEHLRGL---- 105
+ S+ + LSG+ + + +L+ +F+ I E L
Sbjct: 29 LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS-DIFTGRVKDEIPEALRLLL 87
Query: 106 ------SNLTSLSFRRNNAITAQGMKAFAGLI----NLVKLDLERCT------------- 142
L ++ +NA + + L L L
Sbjct: 88 QALLKCPKLHTVRL-SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARAL 146
Query: 143 RIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS----GLTNLKSLQISCSKVTDSGIA 198
+ K L S+ N + + MK + L ++++ + + GI
Sbjct: 147 QELAVNKKAKNAPPLRSIIC-GRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIE 205
Query: 199 YLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACL----DSLSALG 254
+L L L Q+L +L+L+ T +L +
Sbjct: 206 HL---------------------LLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP 244
Query: 255 SLFYLNLNRCQLSDDGCEKFSKI------GSLKVLNLGFNEITDECLVHL-----KGLTN 303
+L L LN C LS G L+ L L +NEI + + L + + +
Sbjct: 245 NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPD 304
Query: 304 LESLNLDSCGIGDEG 318
L L L+ +E
Sbjct: 305 LLFLELNGNRFSEED 319
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 92.0 bits (229), Expect = 1e-20
Identities = 53/274 (19%), Positives = 98/274 (35%), Gaps = 21/274 (7%)
Query: 248 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 307
+ + L ++K L+L N ++ L T LE L
Sbjct: 4 EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELL 63
Query: 308 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 367
NL S + ++L L L+ L+L++ ++ L ++E+++ + IS S
Sbjct: 64 NLSSNVL--YETLDLESLSTLRTLDLNNNY-----VQELLVGPSIETLHAANNNISRVSC 116
Query: 368 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFKNLRS 426
+ K++ L +IT + + +LDL I + A + L
Sbjct: 117 SR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173
Query: 427 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 486
L + + D VK + L L+LS N L E G+ +++ N+++
Sbjct: 174 LNLQYNFIYD--VKGQVVFAKLKTLDLSSN-KLAFMGPE-FQSAAGVTWISLRNNKLVLI 229
Query: 487 GLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDL 520
+ L+ +NL L N RD
Sbjct: 230 E-KALRFSQNLEHFDLRG-----NGFHCGTLRDF 257
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 88.5 bits (220), Expect = 2e-19
Identities = 53/302 (17%), Positives = 111/302 (36%), Gaps = 21/302 (6%)
Query: 228 SLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 287
+ + + + + A + ++ L+L+ LS + L++LNL
Sbjct: 8 NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67
Query: 288 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 347
N + + + L+ L+ L +L+L++ + + L +++ L ++ +
Sbjct: 68 NVLYE--TLDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNISRVSCSRGQ 120
Query: 348 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL-TSLTGLTHLDLF 406
G N+ L+ I+ S ++ L+L +I A L S L HL+L
Sbjct: 121 GKKNI---YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177
Query: 407 GARITD-SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL- 464
I D G L++L++ L G + + +T ++L N L +
Sbjct: 178 YNFIYDVKGQVVF---AKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNN-KLV--LIE 230
Query: 465 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLV 524
+ + L ++ + LR KN R T+ V + + +P L
Sbjct: 231 KALRFSQNLEHFDLRGNGFHCGTLRDFF-SKNQRVQTVAKQTVKKLTGQNEEECTVPTLG 289
Query: 525 SF 526
+
Sbjct: 290 HY 291
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 65.4 bits (160), Expect = 7e-12
Identities = 48/352 (13%), Positives = 106/352 (30%), Gaps = 49/352 (13%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
+ + + + N+ L N ++ A L L+L
Sbjct: 10 NRYKIEKVTDS-SLKQALASLRQSAWNVKELDLSGNP-LSQISAADLAPFTKLELLNLSS 67
Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL 200
++ ++L+ L L +L++ N + + L ++++L + + ++
Sbjct: 68 N-VLY-ETLDLESLSTLRTLDLNN-NYVQE-----LLVGPSIETLHAANNNIS------- 112
Query: 201 KGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 260
+S Q + L +T + YL+
Sbjct: 113 ---RVSCSRG-------------------QGKKNIYLANNKITMLRDLDEGCRSRVQYLD 150
Query: 261 LNRCQLSD-DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG--DE 317
L ++ + E + +L+ LNL +N I D + L++L+L S +
Sbjct: 151 LKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD--VKGQVVFAKLKTLDLSSNKLAFMGP 208
Query: 318 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 377
+ + + L + ++ + L NLE +L G G+LR + +
Sbjct: 209 EFQSAA---GVTWISLRNNKL-VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFF-SKNQR 263
Query: 378 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 429
+ + + T T D A + L
Sbjct: 264 VQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALGHHHH 315
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 8e-11
Identities = 49/332 (14%), Positives = 99/332 (29%), Gaps = 30/332 (9%)
Query: 52 IASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSL 111
I G+ ++ S + + + N++ LD + +S L + L L
Sbjct: 5 IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELL 63
Query: 112 SFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS 171
+ +N + L L LDL + L +E+L+ N I+
Sbjct: 64 NL-SSNVLY--ETLDLESLSTLRTLDLNNN-----YVQELLVGPSIETLHAAN-NNISRV 114
Query: 172 DMKPLSGLTNLKSLQISC---SKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTS 228
S K++ ++ + + D + L I S
Sbjct: 115 ---SCSRGQGKKNIYLANNKITMLRDLDEGCRSRV----QYLDLKLNEIDTVNFAELAAS 167
Query: 229 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 288
L LNL+ + + L L+L+ +L+ G +F + ++L N
Sbjct: 168 SDTLEHLNLQYNFIYD--VKGQVVFAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNN 224
Query: 289 EITDECLVHLKGLTNLESLNLD----SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 344
++ L+ NLE +L CG + + + + +
Sbjct: 225 KLVLIEKA-LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEEC 283
Query: 345 HLSGLTNLESINLSFTGISDGSLRKLAGLSSL 376
+ L + + +L L
Sbjct: 284 TVPTLGHYG--AYCCEDLPAPFADRLIALGHH 313
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 92.1 bits (229), Expect = 3e-20
Identities = 51/227 (22%), Positives = 92/227 (40%), Gaps = 4/227 (1%)
Query: 279 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 338
+ ++LNL N+I + K L +LE L L I + GL NL LEL D ++
Sbjct: 65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124
Query: 339 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSL 397
+ L+ L+ + L I + SL+ L+L + ++++ A L
Sbjct: 125 TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGL 184
Query: 398 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 457
+ L +L+L + + L L L++ G L+ + L L L + Q+
Sbjct: 185 SNLRYLNLAMCNLREIPN--LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS- 241
Query: 458 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 504
+ L LV +N++++ +T PL +L + L
Sbjct: 242 QIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHH 288
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 89.0 bits (221), Expect = 3e-19
Identities = 49/245 (20%), Positives = 90/245 (36%), Gaps = 8/245 (3%)
Query: 218 RLFCLHVFLTSL-----QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 272
++ C+ L + LLNL + ++S L L L L+R +
Sbjct: 47 KVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIG 106
Query: 273 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 332
F+ + +L L L N +T L+ L+ L L + I + +L+ L+
Sbjct: 107 AFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLD 166
Query: 333 LSDT-QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 391
L + ++ GL+NL +NL+ + + L L L L+L ++
Sbjct: 167 LGELKRLSYISEGAFEGLSNLRYLNLAMCNLR--EIPNLTPLIKLDELDLSGNHLSAIRP 224
Query: 392 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 451
+ L L L + ++I N ++L + + LT L L +
Sbjct: 225 GSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERI 284
Query: 452 NLSQN 456
+L N
Sbjct: 285 HLHHN 289
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 72.9 bits (179), Expect = 7e-14
Identities = 44/201 (21%), Positives = 84/201 (41%), Gaps = 12/201 (5%)
Query: 327 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 386
N + L L + Q+ + L +LE + LS I + GL++L +L L ++
Sbjct: 65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124
Query: 387 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG-GLTDAGVKHIKDL 445
T A L+ L L L I + +LR L++ L+ + L
Sbjct: 125 TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGL 184
Query: 446 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 505
S+L LNL+ NL + ++ L L L++S + +++ + L +L+ L +
Sbjct: 185 SNLRYLNLAMC-NLR--EIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQ- 240
Query: 506 KVTANDIKRLQS---RDLPNL 523
+ I+ ++ +L +L
Sbjct: 241 ----SQIQVIERNAFDNLQSL 257
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 66.3 bits (162), Expect = 9e-12
Identities = 55/279 (19%), Positives = 95/279 (34%), Gaps = 56/279 (20%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
+N + L+ + QI + + L +L L RN+ I + AF GL NL L+L
Sbjct: 64 TNTRLLNLHEN-QIQIIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELFD 121
Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL 200
+L ++ L+ LK L + + +
Sbjct: 122 N--------------RLTTIPNGA-----------FVYLSKLKELWLRNNPIE------- 149
Query: 201 KGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCP-VTAACLDSLSALGSLFYL 259
SI S F + L L+L ++ + L +L YL
Sbjct: 150 ---SIPSYAF----------------NRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYL 190
Query: 260 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 319
NL C L + + + L L+L N ++ +GL +L+ L + I
Sbjct: 191 NLAMCNLREI--PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIER 248
Query: 320 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 358
L +L + L+ + + L +LE I+L
Sbjct: 249 NAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLH 287
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 4e-07
Identities = 43/211 (20%), Positives = 77/211 (36%), Gaps = 40/211 (18%)
Query: 57 SSLLSVDLSG---SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
++L +++L + + + ++L S L+ L I + +L L
Sbjct: 112 ANLNTLELFDNRLTTIPNGAFVYL---SKLKELWLRNN-PIESIPSYAFNRIPSLRRLDL 167
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLESLNIKWCNCITDS 171
++ AF GL NL L+L C I NL L+KL+ L++ N ++
Sbjct: 168 GELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP----NLTPLIKLDELDLSG-NHLSAI 222
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQK 231
GL +L+ L + S++ I F +LQ
Sbjct: 223 RPGSFQGLMHLQKLWMIQSQIQ----------VIERNAF----------------DNLQS 256
Query: 232 LTLLNLEGCPVTAACLDSLSALGSLFYLNLN 262
L +NL +T D + L L ++L+
Sbjct: 257 LVEINLAHNNLTLLPHDLFTPLHHLERIHLH 287
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 92.6 bits (230), Expect = 7e-20
Identities = 63/428 (14%), Positives = 142/428 (33%), Gaps = 40/428 (9%)
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
++ L+ L + F + ++ + + + ++ L L +
Sbjct: 444 IQRLTKLQIIYFANSP------FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVE 497
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMI----- 216
+ C +T L L L+SL I+C++ + ++ +
Sbjct: 498 LYNCPNMTQLP-DFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMG 556
Query: 217 ---IRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 273
+ F L + KL LL+ V L++ L L L+ Q+ + +
Sbjct: 557 YNNLEEFPASASLQKMVKLGLLDCVHNKVRH--LEAFGTNVKLTDLKLDYNQIEEIPEDF 614
Query: 274 FSKIGSLKVLNLGFNEITD-ECLVHLKGLTNLESLNLDSCGIGDE-----GLVNLTGLCN 327
+ ++ L N++ + + K + + S++ IG E ++ N
Sbjct: 615 CAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGIN 674
Query: 328 LKCLELSDTQVGSSGLRHLSGLTNLESINLS---FTGISDGSLRK----LAGLSSLKSLN 380
+ LS ++ + + + +I LS T I + SL+ L +++
Sbjct: 675 ASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTID 734
Query: 381 LDARQITDTGLA-ALTSLTGLTHLDLFGARITD--SGAAYLRNFKNL---RSLEICGGGL 434
L ++T T+L L+++D+ + + K + G +
Sbjct: 735 LRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRI 794
Query: 435 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 494
I SL L + N ++ +L L L+++++ S + + P
Sbjct: 795 LRQWPTGITTCPSLIQLQIGSN-DIRKVDEKL---TPQLYILDIADNPNISIDVTSVCPY 850
Query: 495 KNLRSLTL 502
L
Sbjct: 851 IEAGMYVL 858
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 90.3 bits (224), Expect = 3e-19
Identities = 62/466 (13%), Positives = 135/466 (28%), Gaps = 48/466 (10%)
Query: 75 IHLKDCSNLQSLD---FNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI 131
+ L + + L F ++ D + L+ L LSF ++ + + L
Sbjct: 317 VDLDNNGRVTGLSLAGFGAKGRVPD----AIGQLTELKVLSFGTHSETVSGRLFGDEELT 372
Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191
+ + + R+H + L +L ++ + I + +K K
Sbjct: 373 PDMSEERKHRIRMHYKKMFLDYDQRLNLSDL-LQDAINR-----NPEMKPIKKDSRISLK 426
Query: 192 VTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQK---LTLLNLEGCPVTAACLD 248
T G + IS I L + I ++ + T N +
Sbjct: 427 DTQIGNLTNRITFISKAIQRLTKLQI-IYFANSPFTYDNIAVDWEDANSDYAKQYENEEL 485
Query: 249 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH---------LK 299
S S L L + L C + + L+ LN+ N +
Sbjct: 486 SWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDED 545
Query: 300 GLTNLESLNLDSC---GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 356
++ + +L + L L+ +V L L +
Sbjct: 546 TGPKIQIFYMGYNNLEEFPASA--SLQKMVKLGLLDCVHNKV--RHLEAFGTNVKLTDLK 601
Query: 357 LSFTGISDGSLRKLAGLSSLKSLNLDARQITD-TGLAALTSLTGLTHLDLFGARITD--- 412
L + I + A ++ L ++ + S+ + +D +I
Sbjct: 602 LDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGR 661
Query: 413 --SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC------NLTDKTL 464
S + N ++ + + + S ++ + LS N N
Sbjct: 662 NISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKD 721
Query: 465 ELISGLTGLVSLNVSNSRITS--AGLRHLKPLKNLRSLTLESCKVT 508
L ++++ +++TS R L L ++ + +
Sbjct: 722 GNYKNTYLLTTIDLRFNKLTSLSDDFRATT-LPYLSNMDVSYNCFS 766
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 82.2 bits (203), Expect = 1e-16
Identities = 53/394 (13%), Positives = 125/394 (31%), Gaps = 29/394 (7%)
Query: 149 VNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSV 208
V+L ++ L++ + LT LK L T SG ++
Sbjct: 317 VDLDNNGRVTGLSLA-GFGAKGRVPDAIGQLTELKVLSFGTHSETVSG-RLFGDEELTPD 374
Query: 209 IFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 268
+ IR+ +FL Q+L L +L + + + ++L Q+ +
Sbjct: 375 MSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINR--NPEMKPIKKDSRISLKDTQIGN 432
Query: 269 DGC------EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 322
+ ++ L+++ + T + + N + + NL
Sbjct: 433 LTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY--ENEELSWSNL 490
Query: 323 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS---FTGISDGSLRK------LAGL 373
+L +EL + + L L L+S+N++ +
Sbjct: 491 K---DLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTG 547
Query: 374 SSLKSLNLDARQITDTGL-AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 432
++ + + + A+L + L LD ++ A L L++
Sbjct: 548 PKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEA--FGTNVKLTDLKLDYN 605
Query: 433 GLTDAGVKHIKDLSSLTLLNLSQNCNLTD-KTLELISGLTGLVSLNVSNSRITSAGLRHL 491
+ + + L S N L + + + S++ S ++I S G
Sbjct: 606 QIEEIPEDFCAFTDQVEGLGFSHN-KLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNIS 664
Query: 492 KPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 525
+ + + + + ++ N+I++ +
Sbjct: 665 CSMDDYKGINASTVTLSYNEIQKFPTELFATGSP 698
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 70.7 bits (173), Expect = 5e-13
Identities = 44/379 (11%), Positives = 108/379 (28%), Gaps = 62/379 (16%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+ + ++ + + +L ++ C ++ L L L SL+ N
Sbjct: 467 VDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF-LYDLPELQSLNIACN 525
Query: 117 NAITAQGM--------KAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLESLNIKWCN 166
I+A + + + +L+ ++KL L+ N
Sbjct: 526 RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPAS-ASLQKMVKLGLLDC-VHN 583
Query: 167 CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLH--- 223
+ ++ L L++ +++ I + L H
Sbjct: 584 KVRH--LEAFGTNVKLTDLKLDYNQIE----------EIPEDFCAFTDQVEGLGFSHNKL 631
Query: 224 ------VFLTSLQKLTLLNL-----EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 272
S+ + ++ +C + + L+ ++ E
Sbjct: 632 KYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTE 691
Query: 273 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 332
F+ + + L N + S+ +S D N L ++
Sbjct: 692 LFATGSPISTIILSNN--------------LMTSIPENSLKPKDGNYKNTY---LLTTID 734
Query: 333 LSDTQVGS-SGLRHLSGLTNLESINLS---FTGI--SDGSLRKLAGLSSLKSLNLDARQI 386
L ++ S S + L L ++++S F+ + +L + + +I
Sbjct: 735 LRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRI 794
Query: 387 TDTGLAALTSLTGLTHLDL 405
+T+ L L +
Sbjct: 795 LRQWPTGITTCPSLIQLQI 813
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 61.4 bits (149), Expect = 5e-10
Identities = 40/264 (15%), Positives = 72/264 (27%), Gaps = 20/264 (7%)
Query: 259 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD----SCGI 314
N D G + L+L + LT L+ L+ +
Sbjct: 304 FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSG 363
Query: 315 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 374
G LT + + L + L + + + + K
Sbjct: 364 RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRI 423
Query: 375 SLKSLNLDARQITDTGL-AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 433
SLK + T + A+ LT L + + T A N +
Sbjct: 424 SLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAK----- 478
Query: 434 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 493
+ +L LT + L NC + + + L L SLN++ +R SA
Sbjct: 479 QYENEELSWSNLKDLTDVELY-NCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADW 537
Query: 494 ---------LKNLRSLTLESCKVT 508
++ + +
Sbjct: 538 TRLADDEDTGPKIQIFYMGYNNLE 561
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 59.1 bits (143), Expect = 2e-09
Identities = 33/341 (9%), Positives = 94/341 (27%), Gaps = 48/341 (14%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLE-HLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
+Q + + + L+ + L L N + ++AF + L
Sbjct: 544 EDTGPKIQIFYMGYN-NLEEFPASASLQKMVKLGLLDCVHNK-VRH--LEAFGTNVKLTD 599
Query: 136 LDLERC--TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
L L+ I ++E L ++ + + S+ S +K
Sbjct: 600 LKLDYNQIEEIPEDF--CAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNK-- 655
Query: 194 DSGIAYLKGLSISSVIFILCSMIIRLFCLHV-----------FLTSLQKLTLLNLEGCPV 242
+ + + I + + + ++ + L +
Sbjct: 656 ------IGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLM 709
Query: 243 TA-------ACLDSLSALGSLFYLNLNRCQLSD-DGCEKFSKIGSLKVLNLGFNEITD-- 292
T+ + L ++L +L+ + + + L +++ +N +
Sbjct: 710 TSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFP 769
Query: 293 ECLVHLKGLTNL---ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL--S 347
++ L + + I + +T +L L++ +R +
Sbjct: 770 TQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND-----IRKVDEK 824
Query: 348 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L ++++ + + L + D
Sbjct: 825 LTPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQD 865
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 91.3 bits (227), Expect = 7e-20
Identities = 56/229 (24%), Positives = 86/229 (37%), Gaps = 8/229 (3%)
Query: 279 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG--DEGLVNLTGLCNLKCLELSDT 336
+ + LNL N I + L +LE L L I + G GL +L LEL D
Sbjct: 76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGA--FNGLASLNTLELFDN 133
Query: 337 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALT 395
+ L+ L + L I + SL L+L + +++ A
Sbjct: 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFE 193
Query: 396 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 455
L L +L+L I D L L LE+ G + LSSL L +
Sbjct: 194 GLFNLKYLNLGMCNIKDMPN--LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMN 251
Query: 456 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 504
+ ++ GL LV LN++++ ++S PL+ L L L
Sbjct: 252 S-QVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHH 299
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 79.8 bits (197), Expect = 3e-16
Identities = 50/211 (23%), Positives = 76/211 (36%), Gaps = 15/211 (7%)
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285
L L +L L + + + + L SL L L L+ F + L+ L L
Sbjct: 95 FRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154
Query: 286 GFNEITDECLVHLKGLTNLESLNLDSC----GIGDEGLVNLTGLCNLKCLELSDTQVGSS 341
N I + +L L+L I + L NLK L L +
Sbjct: 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLF---NLKYLNLGMCNI--K 209
Query: 342 GLRHLSGLTNLESINLS---FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 398
+ +L+ L LE + +S F I GS GLSSLK L + Q++ A L
Sbjct: 210 DMPNLTPLVGLEELEMSGNHFPEIRPGSFH---GLSSLKKLWVMNSQVSLIERNAFDGLA 266
Query: 399 GLTHLDLFGARITDSGAAYLRNFKNLRSLEI 429
L L+L ++ + L L +
Sbjct: 267 SLVELNLAHNNLSSLPHDLFTPLRYLVELHL 297
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 75.6 bits (186), Expect = 8e-15
Identities = 49/183 (26%), Positives = 73/183 (39%), Gaps = 3/183 (1%)
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285
L L L L +T + L L L L + F+++ SL L+L
Sbjct: 119 FNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDL 178
Query: 286 G-FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 344
G ++ +GL NL+ LNL C I D + NLT L L+ LE+S
Sbjct: 179 GELKKLEYISEGAFEGLFNLKYLNLGMCNIKD--MPNLTPLVGLEELEMSGNHFPEIRPG 236
Query: 345 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 404
GL++L+ + + + +S GL+SL LNL ++ T L L L
Sbjct: 237 SFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELH 296
Query: 405 LFG 407
L
Sbjct: 297 LHH 299
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 72.9 bits (179), Expect = 6e-14
Identities = 41/201 (20%), Positives = 72/201 (35%), Gaps = 12/201 (5%)
Query: 327 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 386
N + L L + + L +LE + L I + GL+SL +L L +
Sbjct: 76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135
Query: 387 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG-LTDAGVKHIKDL 445
T A L+ L L L I + +L L++ L + L
Sbjct: 136 TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGL 195
Query: 446 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 505
+L LNL N+ D + ++ L GL L +S + L +L+ L + +
Sbjct: 196 FNLKYLNLGMC-NIKD--MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMN- 251
Query: 506 KVTANDIKRLQS---RDLPNL 523
+ + ++ L +L
Sbjct: 252 ----SQVSLIERNAFDGLASL 268
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 2e-12
Identities = 38/176 (21%), Positives = 57/176 (32%), Gaps = 7/176 (3%)
Query: 350 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 409
+N +NL I L L+ L L I + A L L L+LF
Sbjct: 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134
Query: 410 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 469
+T + LR L + + + SL L+L + L + G
Sbjct: 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG 194
Query: 470 LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 525
L L LN+ I + +L PL L L + N ++ L S
Sbjct: 195 LFNLKYLNLGMCNIKD--MPNLTPLVGLEELEMSG-----NHFPEIRPGSFHGLSS 243
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 67.5 bits (165), Expect = 4e-12
Identities = 54/238 (22%), Positives = 86/238 (36%), Gaps = 44/238 (18%)
Query: 81 SNLQSLD--FNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL 138
SN + L+ N I R L +L L RN+ I + AF GL +L L+L
Sbjct: 75 SNTRYLNLMENNIQMIQAD---TFRHLHHLEVLQLGRNS-IRQIEVGAFNGLASLNTLEL 130
Query: 139 ERC--TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
T I G + L KL L ++ N I + + +L L + K
Sbjct: 131 FDNWLTVIPSGA--FEYLSKLRELWLRN-NPIESIPSYAFNRVPSLMRLDLGELK----- 182
Query: 197 IAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSL 256
L+ +S + L L LNL C + + +L+ L L
Sbjct: 183 --KLEYISEGA------------------FEGLFNLKYLNLGMCNIKD--MPNLTPLVGL 220
Query: 257 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH---LKGLTNLESLNLDS 311
L ++ + F + SLK L + ++++ + GL +L LNL
Sbjct: 221 EELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSL---IERNAFDGLASLVELNLAH 275
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 1e-06
Identities = 41/184 (22%), Positives = 61/184 (33%), Gaps = 34/184 (18%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
S L+ L I + +L L + AF GL NL L+L
Sbjct: 147 SKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGM 205
Query: 141 C--TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA 198
C + NL L+ LE L + N + GL++LK L + S+V+
Sbjct: 206 CNIKDMP----NLTPLVGLEELEMSG-NHFPEIRPGSFHGLSSLKKLWVMNSQVS----- 255
Query: 199 YLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFY 258
I F L L LNL +++ D + L L
Sbjct: 256 -----LIERNAF----------------DGLASLVELNLAHNNLSSLPHDLFTPLRYLVE 294
Query: 259 LNLN 262
L+L+
Sbjct: 295 LHLH 298
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 89.8 bits (223), Expect = 2e-19
Identities = 72/405 (17%), Positives = 130/405 (32%), Gaps = 58/405 (14%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
+++ +D + I++ L +L L + F GL +L+ L L+
Sbjct: 30 AHVNYVDLSLN-SIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88
Query: 141 C--TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQISCSKVTDSG 196
++ G GL LE L + + + + LT+L+ L
Sbjct: 89 NQFLQLETGA--FNGLANLEVLTLTQ-CNLDGAVLSGNFFKPLTSLEML----------- 134
Query: 197 IAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSL 256
L+ +I + F ++++ +L+L V + C + L
Sbjct: 135 --VLRDNNIKKIQ------------PASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGK 180
Query: 257 F----------YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT---DECLVHLKGLTN 303
++N L + C K S+ L+L N + T
Sbjct: 181 HFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTK 240
Query: 304 LESLNLDSCGIGDEGLVNLTGLC------------NLKCLELSDTQVGSSGLRHLSGLTN 351
++SL L + + +K +LS +++ + S T+
Sbjct: 241 IQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTD 300
Query: 352 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 411
LE + L+ I+ GL+ L LNL + +L L LDL I
Sbjct: 301 LEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR 360
Query: 412 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 456
G NL+ L + L L+SL + L N
Sbjct: 361 ALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 70.5 bits (173), Expect = 4e-13
Identities = 56/291 (19%), Positives = 95/291 (32%), Gaps = 29/291 (9%)
Query: 249 SLSALGSLFYLNLNRCQLSDD-GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 307
S S L L +L + + F + SL +L L +N+ GL NLE L
Sbjct: 49 SFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL 108
Query: 308 NLDSCGIGDEGLVN--LTGLCNLKCLELSDTQVGSSGLRHL-SGLTNLESINLS---FTG 361
L C + L L +L+ L L D + + ++L+
Sbjct: 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS 168
Query: 362 ISDGSLRKLAG-------LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 414
I + L G LSS+ +++ + T +T LDL G +S
Sbjct: 169 ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESM 228
Query: 415 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 474
A + ++ + + N T K LE +G+
Sbjct: 229 AKRFFDAIAGTKIQSLILSNSY---NMGSSFGHTNFKDPD---NFTFKGLEA----SGVK 278
Query: 475 SLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 525
+ ++S S+I + +L LTL N+I ++ L
Sbjct: 279 TCDLSKSKIFALLKSVFSHFTDLEQLTLAQ-----NEINKIDDNAFWGLTH 324
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 69.4 bits (170), Expect = 8e-13
Identities = 65/382 (17%), Positives = 120/382 (31%), Gaps = 67/382 (17%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIF 210
L L+ L ++ GL++L L++ ++ + + F
Sbjct: 50 FSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL----------QLETGAF 99
Query: 211 ILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACL--DSLSALGSLFYLNLNRCQLSD 268
L L +L L C + A L + L SL L L +
Sbjct: 100 ----------------NGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKK 143
Query: 269 -DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 327
F + VL+L FN++ C L L L +
Sbjct: 144 IQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLR--------------LSS 189
Query: 328 LKCLELSDTQVGSSGLRHLSGLTNLESINLS---FTGISDGSLRKLAGLSSLKSLNLDAR 384
+ ++++ +G + T++ +++LS F + ++SL L
Sbjct: 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNS 249
Query: 385 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 444
+ T+ + G + +++ ++ +
Sbjct: 250 YNMGSSFGH-TNFKDPDNFTFKGLEAS-----------GVKTCDLSKSKIFALLKSVFSH 297
Query: 445 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 504
+ L L L+QN + GLT L+ LN+S + + S R + L L L L
Sbjct: 298 FTDLEQLTLAQN-EINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSY 356
Query: 505 CKVTANDIKRLQSR---DLPNL 523
N I+ L + LPNL
Sbjct: 357 -----NHIRALGDQSFLGLPNL 373
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 3e-06
Identities = 30/182 (16%), Positives = 60/182 (32%), Gaps = 5/182 (2%)
Query: 350 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT-GLAALTSLTGLTHLDLFGA 408
++ ++LS I++ + + L L+ L ++ + L+ L L L
Sbjct: 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89
Query: 409 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH--IKDLSSLTLLNLSQNCNLTDKTLEL 466
+ NL L + L A + K L+SL +L L N N+
Sbjct: 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN-NIKKIQPAS 148
Query: 467 I-SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 525
+ L+++ +++ S L + L +T D+
Sbjct: 149 FFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNP 208
Query: 526 FR 527
F+
Sbjct: 209 FK 210
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 90.4 bits (224), Expect = 3e-19
Identities = 71/436 (16%), Positives = 142/436 (32%), Gaps = 65/436 (14%)
Query: 106 SNLTSLSFRRNNAITAQGMKAFAG-----LINLVKLDLERC--TRIHGGLVNLKGLMKLE 158
SNL + I Q + G L N + + ++ L L ++E
Sbjct: 21 SNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAAL--LDSFRQVE 78
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIR 218
LN+ I + D + ++ L + + + + +F
Sbjct: 79 LLNLND-LQIEEIDTYAFAYAHTIQKLYMGFNAIR----------YLPPHVF-------- 119
Query: 219 LFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG 278
++ LT+L LE +++ L L+++ L + F
Sbjct: 120 --------QNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATT 171
Query: 279 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 338
SL+ L L N +T V L + +L N+ + L ++ L+ S
Sbjct: 172 SLQNLQLSSNRLTH---VDLSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNS- 222
Query: 339 GSSGLRHLSG--LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 396
+ + G L + L ++D L L ++L ++
Sbjct: 223 ----INVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVK 276
Query: 397 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 456
+ L L + R+ + Y + L+ L++ L ++ L L L N
Sbjct: 277 MQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLHVE-RNQPQFDRLENLYLDHN 334
Query: 457 CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE----SCKVTANDI 512
++ TL+ +S L +L +S++ LR L +N+ ++ CK+
Sbjct: 335 -SIV--TLK-LSTHHTLKNLTLSHNDWDCNSLRAL--FRNVARPAVDDADQHCKIDYQLE 388
Query: 513 KRLQSRDLPNLVSFRP 528
L ++ R
Sbjct: 389 HGLCCKESDKPYLDRL 404
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 75.7 bits (186), Expect = 1e-14
Identities = 64/450 (14%), Positives = 128/450 (28%), Gaps = 59/450 (13%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+ ++L+ + + +Q L F I + + LT L
Sbjct: 75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVL-ER 132
Query: 117 NAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
N +++ F L L + RI + L++L + N +T
Sbjct: 133 NDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDT--FQATTSLQNLQLSS-NRLTHV--- 186
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTL 234
LS + +L +S + ++ L +
Sbjct: 187 DLSLIPSLFHANVSYNLLST-------------------------------LAIPIAVEE 215
Query: 235 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 294
L+ + L L L L+D L ++L +NE+
Sbjct: 216 LDASHNSINVV---RGPVNVELTILKLQHNNLTDTA--WLLNYPGLVEVDLSYNELEKIM 270
Query: 295 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 354
+ LE L + + + L + LK L+LS + R+ LE+
Sbjct: 271 YHPFVKMQRLERLYISNNRLVALNLY-GQPIPTLKVLDLSHNHLLHVE-RNQPQFDRLEN 328
Query: 355 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 414
+ L I L+ +LK+L L L AL + + A
Sbjct: 329 LYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLRAL--FRNVARPAVDDADQ---- 379
Query: 415 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 474
+ + L C + ++ ++ +++ Q + I+ + L
Sbjct: 380 --HCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLS 437
Query: 475 SLNVSNSRITSAGLRHLKPLKNLRSLTLES 504
+ G L+ N ++
Sbjct: 438 HYITQQGGVPLQGNEQLEAEVNELRAEVQQ 467
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 88.6 bits (220), Expect = 5e-19
Identities = 78/468 (16%), Positives = 160/468 (34%), Gaps = 54/468 (11%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
S + ++ + I + + L SLD + I+D + + L+ LT L NN
Sbjct: 20 FASEVAAAFEMQATDTISEEQLATLTSLDCHNS-SITD--MTGIEKLTGLTKLICTSNN- 75
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
IT + NL L + ++ +++ L KL LN N +T +S
Sbjct: 76 ITTL---DLSQNTNLTYLACDSN-KLTN--LDVTPLTKLTYLNC-DTNKLTKL---DVSQ 125
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLE 238
L L + + +T+ +++ L+ + +T +LT L+
Sbjct: 126 NPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKL-------DVTPQTQLTTLDCS 178
Query: 239 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 298
+T +S L LN + ++ ++ L L+ N++T+ + +
Sbjct: 179 FNKITE---LDVSQNKLLNRLNCDTNNITK---LDLNQNIQLTFLDCSSNKLTE---IDV 229
Query: 299 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 358
LT L + + + ++++ L L L T + L H + L ++
Sbjct: 230 TPLTQLTYFDCSVNPLTE---LDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCR 286
Query: 359 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 418
D + + L L+ A IT+ L+ L +L L +T+ +
Sbjct: 287 KIKELD-----VTHNTQLYLLDCQAAGITE---LDLSQNPKLVYLYLNNTELTELD---V 335
Query: 419 RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 478
+ L+SL + D + + +L ++ T+ + +++ V
Sbjct: 336 SHNTKLKSLSCVNAHIQD--FSSVGKIPALNNNFEAEG-QTI--TMPKETLTNNSLTIAV 390
Query: 479 SNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSF 526
S + G N+ N I V++
Sbjct: 391 SPDLLDQFGN-----PMNIEPGDGGVYDQATNTITWENLSTDNPAVTY 433
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 85.9 bits (213), Expect = 4e-18
Identities = 71/386 (18%), Positives = 125/386 (32%), Gaps = 64/386 (16%)
Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191
N ++ + L L SL+ + ITD M + LT L L + +
Sbjct: 19 NFASEVAAAFEMQATDTISEEQLATLTSLDCH-NSSITD--MTGIEKLTGLTKLICTSNN 75
Query: 192 VTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLS 251
+T L +S LT L + +T ++
Sbjct: 76 ITT--------LDLSQ---------------------NTNLTYLACDSNKLTN---LDVT 103
Query: 252 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 311
L L YLN + +L+ S+ L LN N +T+ + + T L L+
Sbjct: 104 PLTKLTYLNCDTNKLTKLD---VSQNPLLTYLNCARNTLTE---IDVSHNTQLTELDCHL 157
Query: 312 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 371
+++T L L+ S ++ +S L +N I+ L
Sbjct: 158 NKKIT--KLDVTPQTQLTTLDCSFNKITEL---DVSQNKLLNRLNCDTNNITKLDL---N 209
Query: 372 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 431
L L+ + ++T+ +T LT LT+ D +T+ + L +L
Sbjct: 210 QNIQLTFLDCSSNKLTE---IDVTPLTQLTYFDCSVNPLTELDVS---TLSKLTTLHCIQ 263
Query: 432 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 491
L + + H L + L ++ T L L+ + IT L
Sbjct: 264 TDLLEIDLTHNTQLIYFQAEGCRKIKELD------VTHNTQLYLLDCQAAGITEL---DL 314
Query: 492 KPLKNLRSLTLESCKVTANDIKRLQS 517
L L L + ++T D+
Sbjct: 315 SQNPKLVYLYLNNTELTELDVSHNTK 340
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 74.3 bits (183), Expect = 2e-14
Identities = 66/432 (15%), Positives = 152/432 (35%), Gaps = 71/432 (16%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+ L + + +++T + L +NL L + ++++ + L+ LT L+
Sbjct: 64 TGLTKLICTSNNITT---LDLSQNTNLTYLACDSN-KLTN---LDVTPLTKLTYLNCD-T 115
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N +T + L L+ R +++ +L L+ C+ +
Sbjct: 116 NKLTKLD---VSQNPLLTYLNCARN---TLTEIDVSHNTQLTELD---CHLNKKITKLDV 166
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ T L +L S +K+T+ + ++ + L LN
Sbjct: 167 TPQTQLTTLDCSFNKITE-----------------------------LDVSQNKLLNRLN 197
Query: 237 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 296
+ +T L+ L +L+ + +L++ + + L + N +T+ +
Sbjct: 198 CDTNNITKL---DLNQNIQLTFLDCSSNKLTE---IDVTPLTQLTYFDCSVNPLTE---L 248
Query: 297 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 356
+ L+ L +L+ + + L + T L + + ++ T L ++
Sbjct: 249 DVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELD-----VTHNTQLYLLD 303
Query: 357 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 416
GI++ L + L L L+ ++T+ ++ T L L A I D +
Sbjct: 304 CQAAGITELDLSQ---NPKLVYLYLNNTELTELDVSHNTK---LKSLSCVNAHIQDF--S 355
Query: 417 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 476
+ L + G + + +SLT+ + + + G G+
Sbjct: 356 SVGKIPALNNNFEAEGQTITMPKETLT-NNSLTIAVSPDLLDQFGNPMNIEPGDGGV--Y 412
Query: 477 NVSNSRITSAGL 488
+ + + IT L
Sbjct: 413 DQATNTITWENL 424
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 | Back alignment and structure |
|---|
Score = 83.7 bits (207), Expect = 5e-19
Identities = 23/132 (17%), Positives = 52/132 (39%), Gaps = 22/132 (16%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
+ ++D + S + G H++ ++ + C I DG LE L L NL
Sbjct: 63 IQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQK-------- 114
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
+++++++ C + G++ L L+ L + + + + +
Sbjct: 115 -------------SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEKEKIVQA 161
Query: 178 GLTNLKSLQISC 189
T+L SL++
Sbjct: 162 FKTSLPSLELKL 173
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 | Back alignment and structure |
|---|
Score = 74.1 bits (182), Expect = 1e-15
Identities = 21/110 (19%), Positives = 42/110 (38%), Gaps = 7/110 (6%)
Query: 303 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTN----LESINL 357
+++++ I G ++ GL ++ + L + L LS L N + + +
Sbjct: 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEI 121
Query: 358 SF-TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDL 405
++D + L +LK L L D + + T L L+L
Sbjct: 122 ISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLEL 171
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 | Back alignment and structure |
|---|
Score = 71.0 bits (174), Expect = 1e-14
Identities = 28/113 (24%), Positives = 50/113 (44%), Gaps = 7/113 (6%)
Query: 324 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLS----SLKS 378
++ ++ +D+ + S G H+ GL +E I L I DG L +L+ L S+
Sbjct: 59 DKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLE 118
Query: 379 LNLDA-RQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEI 429
+ + + +TD G+ AL L +L L + + +L SLE+
Sbjct: 119 MEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLEL 171
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 | Back alignment and structure |
|---|
Score = 65.2 bits (159), Expect = 1e-12
Identities = 26/131 (19%), Positives = 49/131 (37%), Gaps = 22/131 (16%)
Query: 351 NLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGAR 409
+++I+ + + I + GL ++ + L I D L L+ L L
Sbjct: 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQK------- 114
Query: 410 ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 468
++ +EI G +TD G+ + +L L LS + +K + +
Sbjct: 115 -------------SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEKEKIVQA 161
Query: 469 GLTGLVSLNVS 479
T L SL +
Sbjct: 162 FKTSLPSLELK 172
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 | Back alignment and structure |
|---|
Score = 65.2 bits (159), Expect = 1e-12
Identities = 20/108 (18%), Positives = 45/108 (41%), Gaps = 7/108 (6%)
Query: 423 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG----LVSLNV 478
+++++ + G H++ L + + L + + D LE +S L ++ + +
Sbjct: 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEI 121
Query: 479 SN-SRITSAGLRHLKPLKNLRSLTLESCK-VTANDIKRLQSRD-LPNL 523
+ +T G+ L +NL+ L L V + + LP+L
Sbjct: 122 ISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSL 169
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 | Back alignment and structure |
|---|
Score = 65.2 bits (159), Expect = 1e-12
Identities = 21/111 (18%), Positives = 47/111 (42%), Gaps = 7/111 (6%)
Query: 231 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKI----GSLKVLNL 285
K+ ++ + + D + L + + L +C + D E+ S++ S+ + +
Sbjct: 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEI 121
Query: 286 -GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELS 334
+TD+ ++ L NL+ L L G+ ++ + +L LEL
Sbjct: 122 ISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLELK 172
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 | Back alignment and structure |
|---|
Score = 57.9 bits (140), Expect = 4e-10
Identities = 29/142 (20%), Positives = 46/142 (32%), Gaps = 32/142 (22%)
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN----L 182
+ +D + G +++GL +E + + C+ I D ++ LS L N +
Sbjct: 57 PLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSM 116
Query: 183 KSLQIS-CSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCP 241
++I C VTD GI L + L L L P
Sbjct: 117 LEMEIISCGNVTDKGIIALH--------------------------HFRNLKYLFLSDLP 150
Query: 242 -VTAACLDSLSALGSLFYLNLN 262
V + SL L L
Sbjct: 151 GVKEKEKIVQAFKTSLPSLELK 172
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 87.8 bits (218), Expect = 6e-19
Identities = 60/376 (15%), Positives = 113/376 (30%), Gaps = 51/376 (13%)
Query: 83 LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC- 141
+ + Q G E + L+N ++F+ + + + L+L
Sbjct: 23 FYDVHIDMQTQDVYFGFEDIT-LNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDLQ 80
Query: 142 -TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL 200
I ++ L + N I + L L + + ++
Sbjct: 81 IEEIDTYA--FAYAHTIQKLYM-GFNAIRYLPPHVFQNVPLLTVLVLERNDLS------- 130
Query: 201 KGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 260
S+ IF + KLT L++ + D+ A SL L
Sbjct: 131 ---SLPRGIF----------------HNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQ 171
Query: 261 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 320
L+ +L+ S I SL N+ +N ++ L +E L+ I V
Sbjct: 172 LSSNRLTHVD---LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINV---V 220
Query: 321 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 380
L L+L + + L L ++LS+ + + L+ L
Sbjct: 221 RGPVNVELTILKLQHNNLTDTAW--LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 278
Query: 381 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 440
+ ++ + L LDL + F L +L + +
Sbjct: 279 ISNNRLVALN-LYGQPIPTLKVLDLSHNHLLHVERN-QPQFDRLENLYLDHNSIVTL--- 333
Query: 441 HIKDLSSLTLLNLSQN 456
+ +L L LS N
Sbjct: 334 KLSTHHTLKNLTLSHN 349
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 72.0 bits (177), Expect = 9e-14
Identities = 35/226 (15%), Positives = 74/226 (32%), Gaps = 18/226 (7%)
Query: 301 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 360
L N + + + + L ++ L L+D Q+ + ++ + + F
Sbjct: 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN 103
Query: 361 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 420
I + L L L+ ++ + LT L + + +
Sbjct: 104 AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA 163
Query: 421 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 480
+L++L++ LT + + SL N+S N L ++ + L+ S+
Sbjct: 164 TTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNL------LSTLAIPIAVEELDASH 214
Query: 481 SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS-RDLPNLVS 525
+ I L L L+ N++ + P LV
Sbjct: 215 NSINVV---RGPVNVELTILKLQH-----NNLTDTAWLLNYPGLVE 252
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 62.0 bits (151), Expect = 1e-10
Identities = 27/180 (15%), Positives = 64/180 (35%), Gaps = 6/180 (3%)
Query: 346 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 405
L +++ + L++ K + + A L S + L+L
Sbjct: 17 LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNL 76
Query: 406 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 465
+I + ++ L + + +++ LT+L L +N +L+
Sbjct: 77 NDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRG 135
Query: 466 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 525
+ L +L++SN+ + + +L++L L S N + + +P+L
Sbjct: 136 IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS-----NRLTHVDLSLIPSLFH 190
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 87.6 bits (217), Expect = 2e-18
Identities = 80/444 (18%), Positives = 145/444 (32%), Gaps = 44/444 (9%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
L+ + IS+ + LS L L +N I + F L LDL
Sbjct: 21 QKTTILNISQN-YISELWTSDILSLSKLRILIIS-HNRIQYLDISVFKFNQELEYLDLSH 78
Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL 200
++ ++ + L+ L++ + K ++ LK L +S + + S + +
Sbjct: 79 -NKLVK--ISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPI 135
Query: 201 KGLSISSVIFILCSMIIRLFCLHVF-LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 259
L+IS V+ +L + + L ++ S+ + +L
Sbjct: 136 AHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELS 195
Query: 260 NL------NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL---KGLTNLESLNLD 310
N+ N+C K L L L E T + + T + ++
Sbjct: 196 NIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSIS 255
Query: 311 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS-----GLTNLESINLSFTGISDG 365
+ + + LS QV S +N+ N + +G
Sbjct: 256 NVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMV 315
Query: 366 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 425
+ + +S L+ +TDT LT L L L L+
Sbjct: 316 HMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLIL--------------QMNQLK 361
Query: 426 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 485
L + SL L++SQN D+ S L+SLN+S++ +T
Sbjct: 362 ELSKIAEMT--------TQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTD 413
Query: 486 AGLRHLKPLKNLRSLTLESCKVTA 509
R L ++ L L S K+ +
Sbjct: 414 TIFRCL--PPRIKVLDLHSNKIKS 435
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 72.2 bits (177), Expect = 1e-13
Identities = 61/379 (16%), Positives = 128/379 (33%), Gaps = 24/379 (6%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLT-SLSFRR 115
S L + LS + + S ++ + + + L E L+ + + + F
Sbjct: 115 SQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPT 174
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
N + + NL +++ + L L KL++ + + +
Sbjct: 175 NKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTW 234
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLL 235
S + L+ + + + SIS+V + TSL+ L++
Sbjct: 235 NSFIRILQLVWHTT----------VWYFSISNVKLQG---QLDFRDFDYSGTSLKALSIH 281
Query: 236 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 295
+ ++ N SKI L+ N +TD
Sbjct: 282 QVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVF 341
Query: 296 VHLKGLTNLESLNLDSCGIG--DEGLVNLTGLCNLKCLELSDTQVGSSGLR-HLSGLTNL 352
+ LT LE+L L + + T + +L+ L++S V + S +L
Sbjct: 342 ENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL 401
Query: 353 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT--DTGLAALTSLTGLTHLDLFGARI 410
S+N+S ++D R L +K L+L + +I + L +L L++ ++
Sbjct: 402 LSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIKSIPKQVVKLEALQ---ELNVASNQL 456
Query: 411 TDSGAAYLRNFKNLRSLEI 429
+L+ + +
Sbjct: 457 KSVPDGIFDRLTSLQKIWL 475
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 86.8 bits (215), Expect = 2e-18
Identities = 53/274 (19%), Positives = 98/274 (35%), Gaps = 21/274 (7%)
Query: 248 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 307
+ + L ++K L+L N ++ L T LE L
Sbjct: 4 EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELL 63
Query: 308 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 367
NL S + ++L L L+ L+L++ ++ L ++E+++ + IS S
Sbjct: 64 NLSSNVL--YETLDLESLSTLRTLDLNNNY-----VQELLVGPSIETLHAANNNISRVSC 116
Query: 368 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFKNLRS 426
+ K++ L +IT + + +LDL I + A + L
Sbjct: 117 SR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173
Query: 427 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 486
L + + D VK + L L+LS N L E G+ +++ N+++
Sbjct: 174 LNLQYNFIYD--VKGQVVFAKLKTLDLSSN-KLAFMGPE-FQSAAGVTWISLRNNKLVLI 229
Query: 487 GLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDL 520
+ L+ +NL L N RD
Sbjct: 230 E-KALRFSQNLEHFDLRG-----NGFHCGTLRDF 257
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 84.5 bits (209), Expect = 1e-17
Identities = 43/314 (13%), Positives = 104/314 (33%), Gaps = 24/314 (7%)
Query: 228 SLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 287
+ + + + + A + ++ L+L+ LS + L++LNL
Sbjct: 8 NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67
Query: 288 NEITDECLVHLKGLTNLESLNLDSCGIGD-EGLVNLTGL---------------CNLKCL 331
N + + + L+ L+ L +L+L++ + + ++ L K +
Sbjct: 68 NVLYE--TLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNI 125
Query: 332 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG-LSSLKSLNLDARQITDTG 390
L++ ++ + ++ ++L I + +LA +L+ LNL I D
Sbjct: 126 YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-- 183
Query: 391 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 450
+ L LDL ++ G ++ + + + L K ++ +L
Sbjct: 184 VKGQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIE-KALRFSQNLEH 241
Query: 451 LNLSQNCNLTDKTLELISGLTGLVSLNV-SNSRITSAGLRHLKPLKNLRSLTLESCKVTA 509
+L N + S + ++ + ++T + A
Sbjct: 242 FDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPA 301
Query: 510 NDIKRLQSRDLPNL 523
RL +
Sbjct: 302 PFADRLIALKRKEH 315
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 83.4 bits (206), Expect = 3e-17
Identities = 51/430 (11%), Positives = 126/430 (29%), Gaps = 54/430 (12%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
+ + + + N+ L N ++ A L L+L
Sbjct: 10 NRYKIEKVTDS-SLKQALASLRQSAWNVKELDLSGNP-LSQISAADLAPFTKLELLNLSS 67
Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL 200
++ ++L+ L L +L++ N + + L ++++L + + ++
Sbjct: 68 N-VLY-ETLDLESLSTLRTLDLNN-NYVQE-----LLVGPSIETLHAANNNIS------- 112
Query: 201 KGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 260
+S Q + L +T + YL+
Sbjct: 113 ---RVSCSRG-------------------QGKKNIYLANNKITMLRDLDEGCRSRVQYLD 150
Query: 261 LNRCQLSD-DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG--DE 317
L ++ + E + +L+ LNL +N I D + L++L+L S +
Sbjct: 151 LKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD--VKGQVVFAKLKTLDLSSNKLAFMGP 208
Query: 318 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 377
+ + + L + ++ + L NLE +L G G+LR + +
Sbjct: 209 EFQSAA---GVTWISLRNNKL-VLIEKALRFSQNLEHFDLRGNGFHCGTLRDF-FSKNQR 263
Query: 378 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 437
+ + + T T D A + L+ E +
Sbjct: 264 VQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGS 323
Query: 438 GVKHIK----DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 493
+ ++ + + ++ + ++ ++L + +
Sbjct: 324 ETERLECERENQARQREIDALKE-QYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRA 382
Query: 494 LKNLRSLTLE 503
L +
Sbjct: 383 HAELDGTLQQ 392
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 74.5 bits (183), Expect = 2e-14
Identities = 66/499 (13%), Positives = 132/499 (26%), Gaps = 54/499 (10%)
Query: 52 IASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSL 111
I G+ ++ S + + + N++ LD + +S L + L L
Sbjct: 5 IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELL 63
Query: 112 SFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS 171
+ +N + L L LDL + L +E+L+ N I+
Sbjct: 64 NLS-SNVLY--ETLDLESLSTLRTLDLNNN-----YVQELLVGPSIETLHAAN-NNISRV 114
Query: 172 DMKPLSGLTNLKSLQISC---SKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTS 228
S K++ ++ + + D + L I S
Sbjct: 115 ---SCSRGQGKKNIYLANNKITMLRDLDEGCRSRV----QYLDLKLNEIDTVNFAELAAS 167
Query: 229 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 288
L LNL+ + + L L+L+ +L+ G +F + ++L N
Sbjct: 168 SDTLEHLNLQYNFIYD--VKGQVVFAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNN 224
Query: 289 EITDECLVHLKGLTNLESLNLD----SCGIGDEGLVNLTGLCNLKC-------------- 330
++ L+ NLE +L CG + + +
Sbjct: 225 KLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEEC 283
Query: 331 -----LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL----AGLSSLKSLNL 381
L L+ + +L + + ++
Sbjct: 284 TVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDA 343
Query: 382 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 441
Q L+ + + + R L G +
Sbjct: 344 LKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIEL-QHA 402
Query: 442 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--AGLRHLKPLKNLRS 499
++ S L LL + + ++ + T LK L
Sbjct: 403 TEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEAD 462
Query: 500 LTLESCKVTANDIKRLQSR 518
L L S T ++ +
Sbjct: 463 LALASANATLQELVVREQN 481
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 83.9 bits (208), Expect = 6e-18
Identities = 59/302 (19%), Positives = 109/302 (36%), Gaps = 40/302 (13%)
Query: 232 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 291
LL+L+ +T L +L L L ++S F+ + L+ L L N++
Sbjct: 54 TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 113
Query: 292 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH--LSGL 349
+ + K L+ L + I GL + +EL + SSG+ + G+
Sbjct: 114 E---LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 170
Query: 350 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 409
L I ++ T I+ ++ + SL L+LD +IT A+L L L L L
Sbjct: 171 KKLSYIRIADTNIT--TIPQGL-PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 227
Query: 410 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 469
I+ + G L + L L+L+ N L L +
Sbjct: 228 ISA----------------VDNGSL--------ANTPHLRELHLNNN-KLVKVPGGL-AD 261
Query: 470 LTGLVSLNVSNSRITS------AGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 523
+ + + N+ I++ + + ++L S V +I+ R +
Sbjct: 262 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVR 321
Query: 524 VS 525
+
Sbjct: 322 AA 323
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 78.5 bits (194), Expect = 5e-16
Identities = 52/314 (16%), Positives = 111/314 (35%), Gaps = 50/314 (15%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE- 139
+ LD +I++ + L NL +L NN I+ AFA L+ L +L L
Sbjct: 52 PDTALLDLQNN-KITEIKDGDFKNLKNLHTLILI-NNKISKISPGAFAPLVKLERLYLSK 109
Query: 140 -RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA 198
+ + + L+ L + N IT +GL + +++ + + SG
Sbjct: 110 NQLKELPEKM-----PKTLQELRVHE-NEITKVRKSVFNGLNQMIVVELGTNPLKSSG-- 161
Query: 199 YLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFY 258
I + F ++KL+ + + +T SL
Sbjct: 162 ------IENGAF----------------QGMKKLSYIRIADTNITTI---PQGLPPSLTE 196
Query: 259 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG--D 316
L+L+ +++ + +L L L FN I+ L +L L+L++ +
Sbjct: 197 LHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVP 256
Query: 317 EGLVNLTGLCNLKCLELSD---TQVGSSGLRH---LSGLTNLESINLSFTGISDGSLRKL 370
GL + ++ + L + + +GS+ + + ++L + ++
Sbjct: 257 GGLADHK---YIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPS 313
Query: 371 A--GLSSLKSLNLD 382
+ ++ L
Sbjct: 314 TFRCVYVRAAVQLG 327
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 77.0 bits (190), Expect = 1e-15
Identities = 54/321 (16%), Positives = 105/321 (32%), Gaps = 56/321 (17%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVF 225
N IT+ L NL +L + +K++ IS F
Sbjct: 62 NKITEIKDGDFKNLKNLHTLILINNKIS----------KISPGAF--------------- 96
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285
L KL L L + +L L ++ +++ F+ + + V+ L
Sbjct: 97 -APLVKLERLYLSKNQLKEL---PEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVEL 152
Query: 286 GFNEITDECLVH--LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 343
G N + + + +G+ L + + I + +L L L ++
Sbjct: 153 GTNPLKSSGIENGAFQGMKKLSYIRIADTNITT---IPQGLPPSLTELHLDGNKITKVDA 209
Query: 344 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 403
L GL NL + LSF IS LA L+ L+L+ ++ L + +
Sbjct: 210 ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVP-GGLADHKYIQVV 268
Query: 404 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 463
L I+ + S + C G +S + ++L N +
Sbjct: 269 YLHNNNIS-----------AIGSNDFCPPGYNT-------KKASYSGVSLFSN-PVQYWE 309
Query: 464 LE--LISGLTGLVSLNVSNSR 482
++ + ++ + N +
Sbjct: 310 IQPSTFRCVYVRAAVQLGNYK 330
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 68.5 bits (168), Expect = 7e-13
Identities = 51/256 (19%), Positives = 87/256 (33%), Gaps = 54/256 (21%)
Query: 279 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 338
+L+L N+IT+ K L NL +L L + I L L+ L LS Q
Sbjct: 53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ- 111
Query: 339 GSSGLRHLSG--LTNLESINLS---FTGISDGSLRKLAGLSSLKSLNLDARQITDTGL-- 391
L+ L L+ + + T + GL+ + + L + +G+
Sbjct: 112 ----LKELPEKMPKTLQELRVHENEITKVRKSVF---NGLNQMIVVELGTNPLKSSGIEN 164
Query: 392 AALTSLTGLTHLDLFGARIT--DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 449
A + L+++ + IT G SLT
Sbjct: 165 GAFQGMKKLSYIRIADTNITTIPQGL-----------------------------PPSLT 195
Query: 450 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 509
L+L N +T + GL L L +S + I++ L +LR L L +
Sbjct: 196 ELHLDGN-KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN----- 249
Query: 510 NDIKRLQS--RDLPNL 523
N + ++ D +
Sbjct: 250 NKLVKVPGGLADHKYI 265
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 5e-10
Identities = 34/182 (18%), Positives = 67/182 (36%), Gaps = 22/182 (12%)
Query: 350 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 409
+ ++L I++ L +L +L L +I+ A L L L L +
Sbjct: 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111
Query: 410 ITD--SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE-- 465
+ + K L+ L + +T L+ + ++ L N L +E
Sbjct: 112 LKELPEKM-----PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP-LKSSGIENG 165
Query: 466 LISGLTGLVSLNVSNSRITS--AGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 523
G+ L + ++++ IT+ GL +L L L+ N I ++ + L L
Sbjct: 166 AFQGMKKLSYIRIADTNITTIPQGL-----PPSLTELHLDG-----NKITKVDAASLKGL 215
Query: 524 VS 525
+
Sbjct: 216 NN 217
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 81.2 bits (201), Expect = 4e-17
Identities = 58/255 (22%), Positives = 97/255 (38%), Gaps = 23/255 (9%)
Query: 218 RLFCLHVFLTSL-----QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 272
+ C LTS+ T L LE + + L L L+L+ LS GC
Sbjct: 11 EIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCC 70
Query: 273 K--FSKIGSLKVLNLGFNEITDECL-VHLKGLTNLESLNLDSCGIG---DEGLVNLTGLC 326
SLK L+L FN + + + GL LE L+ + + + L
Sbjct: 71 SQSDFGTTSLKYLDLSFNGVIT--MSSNFLGLEQLEHLDFQHSNLKQMSEFSV--FLSLR 126
Query: 327 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSF----TGISDGSLRKLAGLSSLKSLNLD 382
NL L++S T + +GL++LE + ++ L +L L+L
Sbjct: 127 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT---ELRNLTFLDLS 183
Query: 383 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 442
Q+ A SL+ L L++ + +L+ L+ + + + +
Sbjct: 184 QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 243
Query: 443 KDL-SSLTLLNLSQN 456
+ SSL LNL+QN
Sbjct: 244 QHFPSSLAFLNLTQN 258
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 70.4 bits (173), Expect = 1e-13
Identities = 45/202 (22%), Positives = 78/202 (38%), Gaps = 9/202 (4%)
Query: 327 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA--GLSSLKSLNLDAR 384
+ LEL ++ S LT L ++LS G+S + G +SLK L+L
Sbjct: 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88
Query: 385 QITDTGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 443
+ + L L HLD + + S + + +NL L+I A
Sbjct: 89 GVITMS-SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 147
Query: 444 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 503
LSSL +L ++ N + ++ + L L L++S ++ L +L+ L +
Sbjct: 148 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 207
Query: 504 SCKVTANDIKRLQSRDLPNLVS 525
N+ L + L S
Sbjct: 208 H-----NNFFSLDTFPYKCLNS 224
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 67.3 bits (165), Expect = 2e-12
Identities = 55/284 (19%), Positives = 91/284 (32%), Gaps = 62/284 (21%)
Query: 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC 165
S+ T L N + + F L L KL L
Sbjct: 28 SSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSS------------------------- 61
Query: 166 NCITDSDMKP--LSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLH 223
N ++ G T+LK L +S + V ++SS
Sbjct: 62 NGLSFKGCCSQSDFGTTSLKYLDLSFNGVI----------TMSSN--------------- 96
Query: 224 VFLTSLQKLTLLNLEGCPVTA-ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 282
L++L L+ + + + +L +L YL+++ F+ + SL+V
Sbjct: 97 --FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 154
Query: 283 LNLGFNEITDECLVH-LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 341
L + N + L L NL L+L C + L +L+ L +S S
Sbjct: 155 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 214
Query: 342 GLRHLSGLTNLESINLSF---TGISDGSLRKLAGLSSLKSLNLD 382
L +L+ ++ S L+ SSL LNL
Sbjct: 215 DTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF--PSSLAFLNLT 256
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 1e-09
Identities = 51/239 (21%), Positives = 81/239 (33%), Gaps = 39/239 (16%)
Query: 57 SSLLSVDLSGSDVTDSGLIH--LKDCSNLQSLD--FNFCIQISDGGLEHLRGLSNLTSLS 112
+ L + LS + ++ G ++L+ LD FN I +S GL L L
Sbjct: 52 TQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN----FLGLEQLEHLD 107
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLESLNIKWCNCITD 170
F+ +N F L NL+ LD+ G+ GL LE L + + +
Sbjct: 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI--FNGLSSLEVLKMAGNSFQEN 165
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQ 230
+ L NL L +S ++ +S F SL
Sbjct: 166 FLPDIFTELRNLTFLDLSQCQLE----------QLSPTAF----------------NSLS 199
Query: 231 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI-GSLKVLNLGFN 288
L +LN+ + L SL L+ + + ++ SL LNL N
Sbjct: 200 SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 80.8 bits (200), Expect = 8e-17
Identities = 51/298 (17%), Positives = 98/298 (32%), Gaps = 37/298 (12%)
Query: 232 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 291
TLL+L+ ++ D L L+ L L ++S + FS + L+ L + N +
Sbjct: 56 TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV 115
Query: 292 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 351
+ + ++L L + I +GL N+ C+E+
Sbjct: 116 E---IPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNP-------------- 158
Query: 352 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 411
L +G G+ L L L + ++T +L L L +I
Sbjct: 159 -----LENSGFEPGAFDGL----KLNYLRISEAKLTGIPKDLPETLN---ELHLDHNKIQ 206
Query: 412 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 471
L + L L + + + L +L L+L N L+ L L
Sbjct: 207 AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN-KLSRVPAGL-PDLK 264
Query: 472 GLVSLNVSNSRITS------AGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 523
L + + + IT + ++L + V +++ R + +
Sbjct: 265 LLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDR 322
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 2e-13
Identities = 57/290 (19%), Positives = 104/290 (35%), Gaps = 27/290 (9%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE- 139
+ LD IS+ + +GL +L +L NN I+ KAF+ L L KL +
Sbjct: 54 PDTTLLDLQNN-DISELRKDDFKGLQHLYALVLV-NNKISKIHEKAFSPLRKLQKLYISK 111
Query: 140 -RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA 198
I L L L I N I SGL N+ +++ + + +SG
Sbjct: 112 NHLVEIPPNL-----PSSLVELRIHD-NRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFE 165
Query: 199 Y--LKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSL 256
GL ++ + + + + + L L+L+ + A L+ L L
Sbjct: 166 PGAFDGLKLNYL--RISEAKLTGIPKDLP----ETLNELHLDHNKIQAIELEDLLRYSKL 219
Query: 257 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 316
+ L L Q+ S + +L+ L+L N+++ L L L+ + L + I
Sbjct: 220 YRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITK 278
Query: 317 ------EGLVNLTGLCNLKCLELSDTQVGSSGLRH--LSGLTNLESINLS 358
+ + L + V ++ +T+ +I
Sbjct: 279 VGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFG 328
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 4e-08
Identities = 34/182 (18%), Positives = 61/182 (33%), Gaps = 23/182 (12%)
Query: 350 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 409
+ ++L IS+ GL L +L L +I+ A + L L L +
Sbjct: 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113
Query: 410 ITD--SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE-- 465
+ + +L L I + L ++ + + N L + E
Sbjct: 114 LVEIPPNL-----PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNP-LENSGFEPG 167
Query: 466 LISGLTGLVSLNVSNSRITS--AGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 523
GL L L +S +++T L + L L L+ N I+ ++ DL
Sbjct: 168 AFDGLK-LNYLRISEAKLTGIPKDL-----PETLNELHLDH-----NKIQAIELEDLLRY 216
Query: 524 VS 525
Sbjct: 217 SK 218
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 79.4 bits (196), Expect = 3e-16
Identities = 59/279 (21%), Positives = 112/279 (40%), Gaps = 28/279 (10%)
Query: 232 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 291
+ L+L +T L +L L L ++ + FS +GSL+ L+L +N ++
Sbjct: 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113
Query: 292 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 351
+ K L++L LNL K L + S L L L
Sbjct: 114 NLSSSWFKPLSSLTFLNLLGN--------------PYKTLGETSL---FSHLTKLQILRV 156
Query: 352 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 411
+FT I AGL+ L+ L +DA + +L S+ ++HL L +
Sbjct: 157 GN--MDTFTKIQRKDF---AGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI 211
Query: 412 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS--QNCNLTDKTL----E 465
++ ++ LE+ L + + +L+ +N +TD++L +
Sbjct: 212 LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMK 271
Query: 466 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 504
L++ ++GL+ L S +++ S L +L+ + L +
Sbjct: 272 LLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHT 310
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 77.1 bits (190), Expect = 2e-15
Identities = 45/244 (18%), Positives = 93/244 (38%), Gaps = 18/244 (7%)
Query: 279 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG--DEGLVNLTGLCNLKCLELSDT 336
++K L+L N IT L+ NL++L L S GI +E + L +L+ L+LS
Sbjct: 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDS--FSSLGSLEHLDLSYN 110
Query: 337 QVGSSGLRHLSGLTNLESINLS---FTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLA 392
+ + L++L +NL + + + SL + L+ L+ L + T
Sbjct: 111 YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSL--FSHLTKLQILRVGNMDTFTKIQRK 168
Query: 393 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 452
LT L L++ + + L++ +N+ L + + SS+ L
Sbjct: 169 DFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLE 228
Query: 453 LSQN-------CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 505
L L+ + ++ +++ + ++ L + L L
Sbjct: 229 LRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ-VMKLLNQISGLLELEFSRN 287
Query: 506 KVTA 509
++ +
Sbjct: 288 QLKS 291
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 72.5 bits (178), Expect = 5e-14
Identities = 49/304 (16%), Positives = 88/304 (28%), Gaps = 47/304 (15%)
Query: 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLESLNIK 163
+ SL N IT +NL L L I L LE L++
Sbjct: 52 EAVKSLDLSNNR-ITYISNSDLQRCVNLQALVLTSNGINTIEEDS--FSSLGSLEHLDLS 108
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLH 223
+ N +++ L++L L + + + L
Sbjct: 109 Y-NYLSNLSSSWFKPLSSLTFLNLLGNPYKT----------------------LGETSLF 145
Query: 224 VFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 283
LT LQ L + N++ T + L L L ++ L + I ++ L
Sbjct: 146 SHLTKLQILRVGNMD--TFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHL 203
Query: 284 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 343
L + + + +++E L L + L+ ++ L
Sbjct: 204 ILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGE-------------TNSL 250
Query: 344 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 403
N++ + S + L +S L L Q+ LT L +
Sbjct: 251 IKKFTFRNVKITDESLFQVMKL----LNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKI 306
Query: 404 DLFG 407
L
Sbjct: 307 WLHT 310
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 66.7 bits (163), Expect = 4e-12
Identities = 51/244 (20%), Positives = 85/244 (34%), Gaps = 17/244 (6%)
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285
L L L L + DS S+LGSL +L+L+ LS+ F + SL LNL
Sbjct: 72 LQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131
Query: 286 GFNEITDECLVHL-KGLTNLESLNLDSCG----IGDEGLVNLTGLCNLKCLELSDTQVGS 340
N L LT L+ L + + I + LT L+ LE+ + + S
Sbjct: 132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLT---FLEELEIDASDLQS 188
Query: 341 SGLRHLSGLTNLESINLS---FTGISDGSLRKLAGLS--SLKSLNLDARQIT---DTGLA 392
+ L + N+ + L + + + + + L+ +LD +
Sbjct: 189 YEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETN 248
Query: 393 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 452
+L ++ + + L L LE L L+SL +
Sbjct: 249 SLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIW 307
Query: 453 LSQN 456
L N
Sbjct: 308 LHTN 311
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 63.6 bits (155), Expect = 4e-11
Identities = 38/203 (18%), Positives = 75/203 (36%), Gaps = 12/203 (5%)
Query: 327 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 386
+K L+LS+ ++ L NL+++ L+ GI+ + L SL+ L+L +
Sbjct: 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112
Query: 387 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI----CGGGLTDAGVKHI 442
++ + L+ LT L+L G G L F +L L+I T K
Sbjct: 113 SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSL--FSHLTKLQILRVGNMDTFTKIQRKDF 170
Query: 443 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 502
L+ L L + + +L + + + + L + + + ++ L L
Sbjct: 171 AGLTFLEELEIDAS-DLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLEL 229
Query: 503 ESCKVTANDIKRLQSRDLPNLVS 525
D+ +L +
Sbjct: 230 RD-----TDLDTFHFSELSTGET 247
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 1e-06
Identities = 42/239 (17%), Positives = 82/239 (34%), Gaps = 36/239 (15%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
+L+ LD ++ +S+ + LS+LT L+ N T F+ L L L +
Sbjct: 100 GSLEHLDLSYN-YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGN 158
Query: 141 C---TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGI 197
T+I GL LE L I + + + K L + N+ L + +
Sbjct: 159 MDTFTKIQRKD--FAGLTFLEELEIDA-SDLQSYEPKSLKSIQNVSHLILHMKQHI---- 211
Query: 198 AYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTL--LNLEGCPVTAAC---LDSLSA 252
+ + +S++ L L +L+ + +SL
Sbjct: 212 ------LLLEIFV-------------DVTSSVECLELRDTDLDTFHFSELSTGETNSLIK 252
Query: 253 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 311
+ + + L + ++I L L N++ LT+L+ + L +
Sbjct: 253 KFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHT 310
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 4e-06
Identities = 34/212 (16%), Positives = 69/212 (32%), Gaps = 28/212 (13%)
Query: 81 SNLQSLD--FNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL 138
S+L L+ N + + L L+ L L + T K FAGL L +L++
Sbjct: 124 SSLTFLNLLGNPYKTLGETSL--FSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEI 181
Query: 139 ERC--TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
+ LK + + L + + ++++ L++ + +
Sbjct: 182 DASDLQSYEPKS--LKSIQNVSHLILHM-KQHILLLEIFVDVTSSVECLELRDTDLDTFH 238
Query: 197 IAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSL 256
+ L +S L + + + + L+ + L
Sbjct: 239 FSELSTGETNS------------------LIKKFTFRNVKITDESLF-QVMKLLNQISGL 279
Query: 257 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 288
L +R QL F ++ SL+ + L N
Sbjct: 280 LELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 78.1 bits (193), Expect = 4e-16
Identities = 49/226 (21%), Positives = 81/226 (35%), Gaps = 24/226 (10%)
Query: 279 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 338
+ + + L N I+ + NL L L S + TGL L+ L+LSD
Sbjct: 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD--- 89
Query: 339 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 398
N + + GL L +L+LD + + G L
Sbjct: 90 -----------------NAQLRSVDPATFH---GLGRLHTLHLDRCGLQELGPGLFRGLA 129
Query: 399 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 458
L +L L + R+ NL L + G ++ + + L SL L L QN
Sbjct: 130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN-R 188
Query: 459 LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 504
+ L L++L + + +++ L PL+ L+ L L
Sbjct: 189 VAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLND 234
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 1e-13
Identities = 44/207 (21%), Positives = 72/207 (34%), Gaps = 9/207 (4%)
Query: 255 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 314
+ + L+ ++S F +L +L L N + GL LE L+L
Sbjct: 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD--- 89
Query: 315 GDEGLVNL-----TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 369
+ L ++ GL L L L + G GL L+ + L +
Sbjct: 90 -NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDT 148
Query: 370 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 429
L +L L L +I+ A L L L L R+ R+ L +L +
Sbjct: 149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208
Query: 430 CGGGLTDAGVKHIKDLSSLTLLNLSQN 456
L+ + + L +L L L+ N
Sbjct: 209 FANNLSALPTEALAPLRALQYLRLNDN 235
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 68.9 bits (169), Expect = 4e-13
Identities = 40/201 (19%), Positives = 69/201 (34%), Gaps = 7/201 (3%)
Query: 326 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA-R 384
+ + L ++ NL + L ++ GL+ L+ L+L
Sbjct: 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91
Query: 385 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 444
Q+ A L L L L + + G R L+ L + L +D
Sbjct: 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151
Query: 445 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 504
L +LT L L N ++ GL L L + +R+ + L L +L L +
Sbjct: 152 LGNLTHLFLHGN-RISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210
Query: 505 CKVTANDIKRLQSRDLPNLVS 525
N++ L + L L +
Sbjct: 211 -----NNLSALPTEALAPLRA 226
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 6e-11
Identities = 47/259 (18%), Positives = 75/259 (28%), Gaps = 63/259 (24%)
Query: 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC 165
+ + N I+ +F NL L L
Sbjct: 32 AASQRIFLHGNR-ISHVPAASFRACRNLTILWLHS------------------------- 65
Query: 166 NCITDSDMKPLSGLTNLKSL------QISCSKVTDSGIAYLKGLSISSVIFILCSMIIRL 219
N + D +GL L+ L Q+ S+ F
Sbjct: 66 NVLARIDAAAFTGLALLEQLDLSDNAQLR---------------SVDPATF--------- 101
Query: 220 FCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS 279
L +L L+L+ C + L +L YL L L + F +G+
Sbjct: 102 -------HGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN 154
Query: 280 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 339
L L L N I+ +GL +L+ L L + L L L L +
Sbjct: 155 LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 214
Query: 340 SSGLRHLSGLTNLESINLS 358
+ L+ L L+ + L+
Sbjct: 215 ALPTEALAPLRALQYLRLN 233
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 3e-10
Identities = 49/234 (20%), Positives = 80/234 (34%), Gaps = 32/234 (13%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++ + L G+ ++ + C NL L + ++ GL+ L L N
Sbjct: 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDN 90
Query: 117 NAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
+ + F GL L L L+RC + GL +GL L+ L ++ N +
Sbjct: 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGL--FRGLAALQYLYLQD-NALQALPDD 147
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTL 234
L NL L + ++++ S+ F L L
Sbjct: 148 TFRDLGNLTHLFLHGNRIS----------SVPERAF----------------RGLHSLDR 181
Query: 235 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 288
L L V + LG L L L LS E + + +L+ L L N
Sbjct: 182 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 79.6 bits (197), Expect = 8e-16
Identities = 65/289 (22%), Positives = 111/289 (38%), Gaps = 17/289 (5%)
Query: 228 SLQKLTLLNLEGCPVTAAC---LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 284
K+T ++L P+ SL +L L L L+ ++ F SL L+
Sbjct: 48 RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGS-VSGFKCSASLTSLD 106
Query: 285 LGFNEITDE--CLVHLKGLTNLESLNLDSCGIGDEGLV-NLTGLCNLKCLELSDTQ---V 338
L N ++ L L + L+ LN+ S + G V L +L+ L+LS
Sbjct: 107 LSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGA 166
Query: 339 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 398
G G L+ + +S IS G + ++ +L+ L++ + + + L +
Sbjct: 167 NVVGWVLSDGCGELKHLAISGNKIS-GDV-DVSRCVNLEFLDVSSNNFSTG-IPFLGDCS 223
Query: 399 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 458
L HLD+ G +++ + + L+ L I G L SL L+L++N
Sbjct: 224 ALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV--GPIPPLPLKSLQYLSLAEN-K 280
Query: 459 LTDK-TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 506
T + L L L++S + A L SL L S
Sbjct: 281 FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN 329
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 74.6 bits (184), Expect = 3e-14
Identities = 99/463 (21%), Positives = 159/463 (34%), Gaps = 70/463 (15%)
Query: 57 SSLLSVDLSGSDVTDS--GLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
+SL S+DLS + ++ L L CS L+ L+ + G + L++L L
Sbjct: 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLS 159
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
N+ +G G V G +L+ L I I+
Sbjct: 160 ANS---------ISG-------------ANVVGWVLSDGCGELKHLAISGNK-ISGD--V 194
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTL 234
+S NL+ L +S + I L L
Sbjct: 195 DVSRCVNLEFLDVSSNN--------FST-GIPF------------------LGDCSALQH 227
Query: 235 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 294
L++ G ++ ++S L LN++ Q G + SL+ L+L N+ T E
Sbjct: 228 LDISGNKLSGDFSRAISTCTELKLLNISSNQFV--GPIPPLPLKSLQYLSLAENKFTGEI 285
Query: 295 LVHLKG-LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNL 352
L G L L+L L+ L LS G + L + L
Sbjct: 286 PDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGL 345
Query: 353 ESINLSFTGISDG---SLRKLAGLSSLKSLNLDARQITDTGLAAL--TSLTGLTHLDLFG 407
+ ++LSF S SL L +SL +L+L + + L L L L L
Sbjct: 346 KVLDLSFNEFSGELPESLTNL--SASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN 403
Query: 408 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 467
T L N L SL + L+ + LS L L L N L + + +
Sbjct: 404 NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN-MLEGEIPQEL 462
Query: 468 SGLTGLVSLNVSNSRITSAGL--RHLKPLKNLRSLTLESCKVT 508
+ L +L + + +T G L NL ++L + ++T
Sbjct: 463 MYVKTLETLILDFNDLT--GEIPSGLSNCTNLNWISLSNNRLT 503
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 66.9 bits (164), Expect = 8e-12
Identities = 63/236 (26%), Positives = 100/236 (42%), Gaps = 13/236 (5%)
Query: 279 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 338
S+ + + N L LT LESL L + I + +L L+LS +
Sbjct: 54 SIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGS-VSGFKCSASLTSLDLSRNSL 112
Query: 339 GSS--GLRHLSGLTNLESINLSFTGISD-GSLRKLAGLSSLKSLNLDARQITDT---GLA 392
L L + L+ +N+S + G + L+SL+ L+L A I+ G
Sbjct: 113 SGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWV 172
Query: 393 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 452
L HL + G +I SG + NL L++ + G+ + D S+L L+
Sbjct: 173 LSDGCGELKHLAISGNKI--SGDVDVSRCVNLEFLDVSSNNFST-GIPFLGDCSALQHLD 229
Query: 453 LSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 508
+S N L+ IS T L LN+S+++ G PLK+L+ L+L K T
Sbjct: 230 ISGN-KLSGDFSRAISTCTELKLLNISSNQFV--GPIPPLPLKSLQYLSLAENKFT 282
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 61.1 bits (149), Expect = 5e-10
Identities = 89/475 (18%), Positives = 159/475 (33%), Gaps = 75/475 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRG------LSNLTS 110
S+L +D+SG+ ++ + C+ L+ L+ + G L +L
Sbjct: 223 SALQHLDISGNKLSGDFSRAISTCTELKLLNISSN---------QFVGPIPPLPLKSLQY 273
Query: 111 LSFRRNNAITAQGMKAFAGLI---------NLVKLDLERCTRIHGGL-VNLKGLMKLESL 160
LS N F G I L LDL +G + LESL
Sbjct: 274 LSLAENK---------FTGEIPDFLSGACDTLTGLDLSGN-HFYGAVPPFFGSCSLLESL 323
Query: 161 NIKWCNCITDS-DMKPLSGLTNLKSLQISCSKVTDS---GIAYLKGL------------- 203
+ N + M L + LK L +S ++ + + L
Sbjct: 324 ALSSNN-FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSG 382
Query: 204 SISSVIFILCSMIIRLFCLH---------VFLTSLQKLTLLNLEGCPVTAACLDSLSALG 254
I + ++ L L++ +L L+L ++ SL +L
Sbjct: 383 PILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS 442
Query: 255 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 314
L L L L + ++ + +L+ L L FN++T E L TNL ++L + +
Sbjct: 443 KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRL 502
Query: 315 GDEGLVNLTGLCNLKCLELSDTQVGSSGL--RHLSGLTNLESINLSFTGISDGSL-RKLA 371
E + L NL L+LS+ SG L +L ++L+ + G++ +
Sbjct: 503 TGEIPKWIGRLENLAILKLSNNSF--SGNIPAELGDCRSLIWLDLNTNLFN-GTIPAAMF 559
Query: 372 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA--AYLRNFKNLRSLEI 429
S + N I + + G + G L I
Sbjct: 560 KQSGKIAAN----FIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNI 615
Query: 430 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
+ S+ L++S N L+ + I + L LN+ ++ I+
Sbjct: 616 TSRVYGGHTSPTFDNNGSMMFLDMSYN-MLSGYIPKEIGSMPYLFILNLGHNDIS 669
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 55.3 bits (134), Expect = 4e-08
Identities = 92/472 (19%), Positives = 163/472 (34%), Gaps = 90/472 (19%)
Query: 52 IASQGSSLLSVDLSGSDVTDSGLI--HLKDCSNLQSLDFNFCIQISDGGL--EHLRGLSN 107
++ +L +DLSG+ G + CS L+SL + S G L + L +
Sbjct: 289 LSGACDTLTGLDLSGNHF--YGAVPPFFGSCSLLESLALSSN-NFS-GELPMDTLLKMRG 344
Query: 108 LTSLSFRRNNAITAQGMKAFAGLI---------NLVKLDLERCTRIHGGL---VNLKGLM 155
L L N F+G + +L+ LDL G + +
Sbjct: 345 LKVLDLSFNE---------FSGELPESLTNLSASLLTLDLSSN-NFSGPILPNLCQNPKN 394
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSM 215
L+ L ++ N T LS + L SL +S + YL G +I S
Sbjct: 395 TLQELYLQN-NGFTGKIPPTLSNCSELVSLHLSFN--------YLSG-TIPS-------- 436
Query: 216 IIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 275
L SL KL L L + L + +L L L+ L+ + S
Sbjct: 437 ---------SLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS 487
Query: 276 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS--------CGIGD-EGLV------ 320
+L ++L N +T E + L NL L L + +GD L+
Sbjct: 488 NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNT 547
Query: 321 -NLTG-----LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR--KLAG 372
G + +++ + ++ + + + + +R +L
Sbjct: 548 NLFNGTIPAAMFKQS-GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNR 606
Query: 373 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDL----FGARITDSGAAYLRNFKNLRSLE 428
LS+ N+ +R + + LD+ I + + L L
Sbjct: 607 LSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE----IGSMPYLFILN 662
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 480
+ ++ + + DL L +L+LS N L + + +S LT L +++SN
Sbjct: 663 LGHNDISGSIPDEVGDLRGLNILDLSSN-KLDGRIPQAMSALTMLTEIDLSN 713
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 78.5 bits (194), Expect = 1e-15
Identities = 66/460 (14%), Positives = 142/460 (30%), Gaps = 77/460 (16%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
+ + L+ + N + + + L +L +
Sbjct: 202 VMRLTKLRQFYMGNS-PFVAENICEAWENENSEYAQQYKTEDLK------WDNLKDLTDV 254
Query: 137 DLERC---TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG--------LTNLKSL 185
++ C T++ L L +++ +N+ CN + ++ +
Sbjct: 255 EVYNCPNLTKLPTFLKALP---EMQLINV-ACNRGISGEQLKDDWQALADAPVGEKIQII 310
Query: 186 QISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN--LEGCPVT 243
I + LK + + + + L L L LEG
Sbjct: 311 YIGYNN--------LKTFPVETSLQ--------------KMKKLGMLECLYNQLEGKL-- 346
Query: 244 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD-ECLVHLKGLT 302
+ + L LNL Q+++ ++ L+ N++ + K ++
Sbjct: 347 ----PAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVS 402
Query: 303 NLESLNLDSC---GIGDEGLVNLT----GLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 355
+ +++ + + L N+ + LS+ Q+ S + L SI
Sbjct: 403 VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSI 462
Query: 356 NLS---FTGISDGSLRK----LAGLSSLKSLNLDARQITDTGLA-ALTSLTGLTHLDLFG 407
NL T I SL+ L S++L ++T T+L L +DL
Sbjct: 463 NLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSY 522
Query: 408 ARITD-----SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 462
+ ++ L+ F + G + I SLT L + N ++
Sbjct: 523 NSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN-DIRKV 581
Query: 463 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 502
++ + L++ ++ S L ++ P L
Sbjct: 582 NEKI---TPNISVLDIKDNPNISIDLSYVCPYIEAGMYML 618
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 72.4 bits (178), Expect = 1e-13
Identities = 64/477 (13%), Positives = 143/477 (29%), Gaps = 52/477 (10%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+ + L G + + + L+ L + + L +G+S S ++
Sbjct: 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQK 140
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM--- 173
+ Q DL + + +K S I
Sbjct: 141 MRMHYQK-TFVDYDPREDFSDL---IKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT 196
Query: 174 ---KPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQ 230
K + LT L+ + S I S + ++ +L+
Sbjct: 197 FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLK-------WDNLK 249
Query: 231 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS-----DDGCEKFSKIG---SLKV 282
LT + + CP L AL + +N+ + D + + +++
Sbjct: 250 DLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQI 309
Query: 283 LNLGFNEITD-ECLVHLKGLTNLESLNLDSCGIGDEGLVN-LTGLCNLKCLELSDTQVGS 340
+ +G+N + L+ + L L + EG + L L L+ Q+
Sbjct: 310 IYIGYNNLKTFPVETSLQKMKKLGMLECLYNQL--EGKLPAFGSEIKLASLNLAYNQITE 367
Query: 341 SGLRHLSGLTNLESINLS---FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS- 396
+E+++ + I + +S + +++ +I
Sbjct: 368 IPANFCGFTEQVENLSFAHNKLKYIPNIFD--AKSVSVMSAIDFSYNEIGSVDGKNFDPL 425
Query: 397 ------LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG-------GGLTDAGVKHIK 443
++ ++L +I+ L S+ + G ++ K
Sbjct: 426 DPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFK 485
Query: 444 DLSSLTLLNLSQNCNLTDKTLEL-ISGLTGLVSLNVSNSRITS--AGLRHLKPLKNL 497
+ LT ++L N LT + + + L LV +++S + + + LK
Sbjct: 486 NTYLLTSIDLRFN-KLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGF 541
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 72.4 bits (178), Expect = 1e-13
Identities = 49/374 (13%), Positives = 102/374 (27%), Gaps = 45/374 (12%)
Query: 176 LSGLTNLKSLQISCSKVTDSGIAY----LKGLSISSVIFILCSMIIRLFCLHVFLTSLQK 231
+ LT L+ L + + + + + + F +
Sbjct: 101 IGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160
Query: 232 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 291
L + P + S + ++ + ++ L+ +G +
Sbjct: 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFV 219
Query: 292 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL------------------CNLKCLE- 332
E + N E D NL L L ++
Sbjct: 220 AENICEAWENENSEYAQQY--KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277
Query: 333 ----------LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL 381
+ L ++ I + + + + L + L L
Sbjct: 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLEC 337
Query: 382 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD-AGVK 440
Q+ L A S L L+L +IT+ A + + + +L L +
Sbjct: 338 LYNQLEGK-LPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIF 396
Query: 441 HIKDLSSLTLLNLSQN------CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 494
K +S ++ ++ S N D + S+N+SN++I+
Sbjct: 397 DAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTG 456
Query: 495 KNLRSLTLESCKVT 508
L S+ L +T
Sbjct: 457 SPLSSINLMGNMLT 470
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 68.9 bits (169), Expect = 2e-12
Identities = 54/440 (12%), Positives = 122/440 (27%), Gaps = 64/440 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+ L + S + + N + + L +LT +
Sbjct: 206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLK------WDNLKDLTDVEVYNC 259
Query: 117 NAITAQGMKAFAGLINLVKLDL--------ERCTRIHGGLVNLKGLMKLESLNIKWCNCI 168
+T L + +++ E+ L + K++ + I + N
Sbjct: 260 PNLTKLP-TFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK 318
Query: 169 TDSDMKPLSGLTNLKSLQISCSKVTDS--GIAYLKGL--------SISSVIFILCSMIIR 218
T L + L L+ +++ L I+ + C
Sbjct: 319 TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCG---- 374
Query: 219 LFCLHVFLTSLQKLTLLN--LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 276
F ++ L+ + L+ P ++ + ++ + ++ + F
Sbjct: 375 ------FTEQVENLSFAHNKLKYIPNIF----DAKSVSVMSAIDFSYNEIGSVDGKNFDP 424
Query: 277 I-------GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-------GIGDEGLVNL 322
+ ++ +NL N+I+ + L S+NL + N
Sbjct: 425 LDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENF 484
Query: 323 TGLCNLKCLELSDTQVGS-SGLRHLSGLTNLESINLS---FTGISD--GSLRKLAGLSSL 376
L ++L ++ S + L L I+LS F+ + L G
Sbjct: 485 KNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIR 544
Query: 377 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 436
+ + +T LT L + I N+ L+I
Sbjct: 545 NQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEK---ITPNISVLDIKDNPNIS 601
Query: 437 AGVKHIKDLSSLTLLNLSQN 456
+ ++ + L +
Sbjct: 602 IDLSYVCPYIEAGMYMLFYD 621
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 60.8 bits (148), Expect = 6e-10
Identities = 33/275 (12%), Positives = 85/275 (30%), Gaps = 26/275 (9%)
Query: 249 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH----LKGLTNL 304
SL++ G + L+L S + ++ L+VL LG + + + +
Sbjct: 76 SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135
Query: 305 ESLNLDSCG-----IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 359
E + + + + L + R T + ++ +
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI 195
Query: 360 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 419
T +S + L+ L+ + + + + +
Sbjct: 196 TFVSKA----VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK-----TEDLKWD 246
Query: 420 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL-------ISGLTG 472
N K+L +E+ +K L + L+N++ N ++ + L+
Sbjct: 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEK 306
Query: 473 LVSLNVSNSRITSAGL-RHLKPLKNLRSLTLESCK 506
+ + + + + + + L+ +K L L +
Sbjct: 307 IQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQ 341
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 3e-07
Identities = 26/234 (11%), Positives = 58/234 (24%), Gaps = 13/234 (5%)
Query: 296 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ----VGSSGLRHLSGLTN 351
V L + L+L+ G + L L+ L L G + +S +
Sbjct: 75 VSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMS 134
Query: 352 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG--LAALTSLTGLTHLDLFGAR 409
E + + + T +
Sbjct: 135 DEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNN 194
Query: 410 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 469
IT + + LR + + + + + +L
Sbjct: 195 IT-FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLK------WDN 247
Query: 470 LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 523
L L + V N + LK L ++ + + + + + + + L +
Sbjct: 248 LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADA 301
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 71.1 bits (173), Expect = 1e-13
Identities = 41/200 (20%), Positives = 76/200 (38%), Gaps = 39/200 (19%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIF 210
L + L +L IK N ++ NLKSL+I + DS + +
Sbjct: 168 LDAMPLLNNLKIKGTNNLSIGKKP----RPNLKSLEIISGGLPDSVVEDI---------- 213
Query: 211 ILCSMIIRLFCLHVFLTSLQKLTL---LNLEGCPVTAACLDSL---SALGSLFYLNLNRC 264
L L +L+KL L + G L +L +L +
Sbjct: 214 -----------LGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDA 262
Query: 265 QLSDDGCEKFSK---IGSLKVLNLGFNEITDE----CLVHLKGLTNLESLNLDSCGIGDE 317
+ + E F + + L+ +++ +TDE L H+ + +L+ +N+ + DE
Sbjct: 263 EEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE 322
Query: 318 GLVNLTGLCNLKCLELSDTQ 337
L +K +++SD+Q
Sbjct: 323 MKKELQKSLPMK-IDVSDSQ 341
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 65.0 bits (157), Expect = 1e-11
Identities = 26/138 (18%), Positives = 53/138 (38%), Gaps = 18/138 (13%)
Query: 301 LTNLESLNLDSCGIGDEGLVNLTG--LCNLKCLEL---SDTQVGSSGLRHLSGL------ 349
NL+SL + S G+ D + ++ G L NL+ L L + + L
Sbjct: 192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRF 251
Query: 350 TNLESINLSFTGISDGSLRKLAG---LSSLKSLNLDARQITDTGLAAL----TSLTGLTH 402
NL+ + + + + L L+++++ A +TD G L + L
Sbjct: 252 PNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKF 311
Query: 403 LDLFGARITDSGAAYLRN 420
+++ ++D L+
Sbjct: 312 INMKYNYLSDEMKKELQK 329
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 65.0 bits (157), Expect = 2e-11
Identities = 35/190 (18%), Positives = 61/190 (32%), Gaps = 29/190 (15%)
Query: 298 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL--SGLTNLESI 355
L + L +L + G NLK LE+ + S + + S L NLE +
Sbjct: 168 LDAMPLLNNLKIKGTNNLSIGKK---PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKL 224
Query: 356 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 415
L G + L + L L + A +
Sbjct: 225 VLYVGVEDYGFDGDMNVFRPL---------------FSKDRFPNLKWLGIVDAEEQNVVV 269
Query: 416 AYL---RNFKNLRSLEICGGGLTDAGVKHI----KDLSSLTLLNLSQNCNLTDKTLE-LI 467
L +++I G LTD G + + + L +N+ N L+D+ + L
Sbjct: 270 EMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN-YLSDEMKKELQ 328
Query: 468 SGLTGLVSLN 477
L + ++
Sbjct: 329 KSLPMKIDVS 338
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 61.9 bits (149), Expect = 2e-10
Identities = 37/197 (18%), Positives = 68/197 (34%), Gaps = 41/197 (20%)
Query: 344 RHLSGLTNLESINLSFT-GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS--LTGL 400
L + L ++ + T +S G +LKSL + + + D+ + + L L
Sbjct: 166 PVLDAMPLLNNLKIKGTNNLSIGKKP----RPNLKSLEIISGGLPDSVVEDILGSDLPNL 221
Query: 401 THLDLFGAR---ITDSGAAYL------RNFKNLRSLEICGGGLTDAGVKHI---KDLSSL 448
L L+ D F NL+ L I + V+ L L
Sbjct: 222 EKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQL 281
Query: 449 TLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 508
+++S LTD+ L+ L H+ +K+L+ + ++ ++
Sbjct: 282 ETMDISAG-VLTDEGARLL--------------------LDHVDKIKHLKFINMKYNYLS 320
Query: 509 ANDIKRLQSRDLPNLVS 525
K LQ LP +
Sbjct: 321 DEMKKELQKS-LPMKID 336
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 71.4 bits (175), Expect = 2e-13
Identities = 62/392 (15%), Positives = 131/392 (33%), Gaps = 21/392 (5%)
Query: 81 SNLQSLD--FNFCIQISDGGLEHLRGLSNLTSLS-----FRRNNAITAQGMKAFAGLINL 133
++L+ LD FN + L+ LT L FR+ + + + L++L
Sbjct: 121 ASLRHLDLSFNDFDVLPVCKE--FGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDL 178
Query: 134 VKLDLERCTRIHGGLVNLKGL-MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKV 192
V ++ + N L + ++ + L+N+K +C ++
Sbjct: 179 VSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRL 238
Query: 193 TDSGIAYLKGLSISSVIFILCSMIIRLFCLH---VFLTSLQKLTLLN--LEGCPVTAACL 247
+G ++ +V + + ++ L + N +
Sbjct: 239 MTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFT 298
Query: 248 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 307
S +AL SL ++ +S + + L ++ +V ++ L
Sbjct: 299 YSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFL 358
Query: 308 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS--SGLRHLSGLTNLESINLSFTGISDG 365
N D + L L+ L L + + +++LE++++S ++
Sbjct: 359 NFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSH 418
Query: 366 SLRKL-AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
+ + A S+ LNL + +T + L + LDL RI + L
Sbjct: 419 AYDRTCAWAESILVLNLSSNMLTGSVFRCLPPK--VKVLDLHNNRIMSIPKDVTH-LQAL 475
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 456
+ L + L L+SL + L N
Sbjct: 476 QELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 67.6 bits (165), Expect = 4e-12
Identities = 80/433 (18%), Positives = 152/433 (35%), Gaps = 24/433 (5%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
++L + IS+ + + LS L L N I + F +L LD+
Sbjct: 52 PRTKALSLSQN-SISELRMPDISFLSELRVLRLSHNR-IRSLDFHVFLFNQDLEYLDVS- 108
Query: 141 CTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA 198
H L N+ + L L++ + + K LT L L +S +K +
Sbjct: 109 ----HNRLQNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLL 164
Query: 199 YLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFY 258
+ L +S ++ L S I+ + T+L+L P + + ++ +L +
Sbjct: 165 PVAHLHLSCILLDLVSYHIKGGETESL--QIPNTTVLHLVFHPNSLFSVQVNMSVNALGH 222
Query: 259 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 318
L L+ +L+D+ C++ S +T T +
Sbjct: 223 LQLSNIKLNDENCQRLMTFLSELTRGPTLLNVT-----LQHIETTWKCSVKLFQFFWPRP 277
Query: 319 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 378
+ L + NL E D + + L L N F + + +
Sbjct: 278 VEYLN-IYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYS---VFAEMNI 333
Query: 379 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT--D 436
L + S + T L+ TDS K L++L + GL
Sbjct: 334 KMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFF 393
Query: 437 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 496
K++SSL L++S N + + ++ LN+S++ +T + R L P
Sbjct: 394 KVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPP--K 451
Query: 497 LRSLTLESCKVTA 509
++ L L + ++ +
Sbjct: 452 VKVLDLHNNRIMS 464
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 58.0 bits (140), Expect = 4e-09
Identities = 61/367 (16%), Positives = 126/367 (34%), Gaps = 22/367 (5%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGL-SNLTSLSFRR 115
+ L + LS + L+ + L I G E L+ + + L F
Sbjct: 146 TKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHP 205
Query: 116 NNAITAQGMKAFAGLINL----VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS 171
N+ + Q + L +L +KL+ E C R+ L L L ++ ++
Sbjct: 206 NSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKC 265
Query: 172 DMKPL-----SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFL 226
+K + L ++ ++ D ++ S++ + LF
Sbjct: 266 SVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALY 325
Query: 227 TSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 286
+ ++ + L + + S +LN + +D + S + L+ L L
Sbjct: 326 SVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQ 385
Query: 287 FNEITDECLV--HLKGLTNLESLNLDSCGIGDEGLVNLTGL-CNLKCLELSDTQVGSSGL 343
N + + V K +++LE+L++ + ++ L LS + S
Sbjct: 386 RNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVF 445
Query: 344 RHLSGLTNLESINLS---FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 400
R L ++ ++L I L +L+ LN+ + Q+ LT L
Sbjct: 446 RCLP--PKVKVLDLHNNRIMSIPKDVTH----LQALQELNVASNQLKSVPDGVFDRLTSL 499
Query: 401 THLDLFG 407
++ L
Sbjct: 500 QYIWLHD 506
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 1e-11
Identities = 72/453 (15%), Positives = 141/453 (31%), Gaps = 95/453 (20%)
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
E LR SNLT + + + + ++
Sbjct: 14 QEPLRHSSNLTEMP------------VEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD--SGIAYLKGLSISSVIFILCSMI 216
++ C L+++ ++ +L+ L S
Sbjct: 62 VSRLRDCLD------------RQAHELELNNLGLSSLPELPPHLESLVASC--------- 100
Query: 217 IRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 276
L L SL+ L + N ++ L YL ++ QL +
Sbjct: 101 NSLTELPELPQSLKSLLVDNNNLKALS-------DLPPLLEYLGVSNNQLEK--LPELQN 151
Query: 277 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 336
LK++++ N + +LE + + + E L L L L + +
Sbjct: 152 SSFLKIIDVDNNSLKKL----PDLPPSLEFIAAGNNQL--EELPELQNLPFLTAIYADNN 205
Query: 337 QVGSSGLRHL-SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 395
L+ L +LESI + L +L L L ++ D +
Sbjct: 206 S-----LKKLPDLPLSLESIVAGNNILE--ELPELQNLPFLTTIYADNNLLKTL----PD 254
Query: 396 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL-SSLTLLNLS 454
L L++ +TD ++L L+ +++ + +L +L LN S
Sbjct: 255 LPPSLEALNVRDNYLTD----LPELPQSLTFLD-----VSENIFSGLSELPPNLYYLNAS 305
Query: 455 QNCNLTDKTLELISGLTGLVSLNVSNSRITS--AGLRHLKPL--------------KNLR 498
N + L L LNVSN+++ A L+ L +NL+
Sbjct: 306 SN-EIR----SLCDLPPSLEELNVSNNKLIELPALPPRLERLIASFNHLAEVPELPQNLK 360
Query: 499 SLTLESCKVTA--NDIKRLQSRDLPNLVSFRPE 529
L +E + + + ++ + + ++ PE
Sbjct: 361 QLHVEYNPLREFPDIPESVEDLRMNSHLAEVPE 393
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 61.6 bits (150), Expect = 2e-10
Identities = 70/441 (15%), Positives = 134/441 (30%), Gaps = 79/441 (17%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
L+ SNL + + + T + +
Sbjct: 17 LRHSSNLTEMP------------VEAENVKSKTEYYNAWSE-WERNAPPGNGEQREMAVS 63
Query: 137 DLERCTRIHGGLVNLKG---------LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
L C + L LESL CN +T+ + L +L
Sbjct: 64 RLRDCLDRQAHELELNNLGLSSLPELPPHLESLVA-SCNSLTELP-ELPQSLKSLLVDNN 121
Query: 188 SCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVF------LTSL----QKLTLLNL 237
+ ++D L+ L +S+ + L + L L L +
Sbjct: 122 NLKALSDL-PPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAA 180
Query: 238 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 297
+ L L L L + + L + SL+ + G N + + L
Sbjct: 181 GNNQLEE--LPELQNLPFLTAIYADNNSLK----KLPDLPLSLESIVAGNNILEE--LPE 232
Query: 298 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 357
L+ L L ++ D+ + + L +L +L+ L + D + + LT L+
Sbjct: 233 LQNLPFLTTIYADNNLL--KTLPDL--PPSLEALNVRDNYL-TDLPELPQSLTFLDVSEN 287
Query: 358 SFTGISD--GSLRKL-----------AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 404
F+G+S+ +L L SL+ LN+ ++ + L L
Sbjct: 288 IFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELP----ALPPRLERLI 343
Query: 405 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 464
+ + +NL+ L + L D+ ++ +L N +L
Sbjct: 344 ASFNHLAEVPE----LPQNLKQLHVEYNPLR-----EFPDIPE-SVEDLRMNSHLA---- 389
Query: 465 ELISGLTGLVSLNVSNSRITS 485
E+ L L+V + +
Sbjct: 390 EVPELPQNLKQLHVETNPLRE 410
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 2e-08
Identities = 57/367 (15%), Positives = 121/367 (32%), Gaps = 68/367 (18%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRR 115
L + +S + + L L++ S L+ +D + + L+ L +L ++
Sbjct: 131 PLLEYLGVSNNQLEK--LPELQNSSFLKIID------VDNNSLKKLPDLPPSLEFIAAG- 181
Query: 116 NNAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLM----KLESLNIKWCNCIT 169
NN + + L L + + ++ ++L+ ++ LE L
Sbjct: 182 NNQLEE--LPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELP-------- 231
Query: 170 DSDMKPLSGLTNLKSLQISCSKVTD--SGIAYLKGLSISSVIFILCSMIIRLFCLHVFLT 227
L L L ++ + + L+ L++ L L
Sbjct: 232 -----ELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRD---------NYLTDLPELPQ 277
Query: 228 SLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 287
SL L + ++ +L+YLN + ++ SL+ LN+
Sbjct: 278 SLTFLDVSENIFSGLS-------ELPPNLYYLNASSNEIR----SLCDLPPSLEELNVSN 326
Query: 288 NEITDECLVHL-KGLTNLESLNLDSCGIGD--EGLVNLTGLCNLKCLELSDTQVGSSGLR 344
N++ L LE L + + E NL L +++ L + +
Sbjct: 327 NKLI-----ELPALPPRLERLIASFNHLAEVPELPQNLKQL-HVEYNPLREFPDIPESVE 380
Query: 345 HLSGLTNLESI-----NLSFTGISDGSLRKL-AGLSSLKSLNLDARQITDTGLAALTSLT 398
L ++L + NL + LR+ S++ L +++ ++ D A +
Sbjct: 381 DLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESVEDLRMNSERVVDPYEFAHETTD 440
Query: 399 GLTHLDL 405
L
Sbjct: 441 KLEDDVF 447
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 66.1 bits (161), Expect = 1e-11
Identities = 58/274 (21%), Positives = 95/274 (34%), Gaps = 49/274 (17%)
Query: 229 LQKLTLLNLEGCPVTAACLDSL-SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 287
+T L + L SL + L L ++ QL+ + L + +
Sbjct: 60 PAHITTLVIPDNN-----LTSLPALPPELRTLEVSGNQLTSLPVL-PPGLLELSIFSNPL 113
Query: 288 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 347
+ + L L + + L L L+ L +SD Q+ +S S
Sbjct: 114 THLPAL-------PSGLCKLWIFGNQLTS--LPVL--PPGLQELSVSDNQL-ASLPALPS 161
Query: 348 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL-TSLTGLTHLDLF 406
L L + N T + S L+ L++ Q+ +L T + L L +
Sbjct: 162 ELCKLWAYNNQLTSLPML-------PSGLQELSVSDNQLA-----SLPTLPSELYKLWAY 209
Query: 407 GARITDSGAAYLRNF-KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 465
R+T L L+ L + G LT S L L +S N LT
Sbjct: 210 NNRLTS-----LPALPSGLKELIVSGNRLTSLP----VLPSELKELMVSGN-RLT----S 255
Query: 466 LISGLTGLVSLNVSNSRITS--AGLRHLKPLKNL 497
L +GL+SL+V +++T L HL +
Sbjct: 256 LPMLPSGLLSLSVYRNQLTRLPESLIHLSSETTV 289
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 57.6 bits (139), Expect = 6e-09
Identities = 69/441 (15%), Positives = 132/441 (29%), Gaps = 97/441 (21%)
Query: 80 CSNLQSLDFNFCIQISDGGLEHL--RGLSNLTSLSFRRNNAITAQGMKAFAGLI-NLVKL 136
+ L+ + + GL L +++T+L NN + + L L L
Sbjct: 39 NNGNAVLN------VGESGLTTLPDCLPAHITTLVIPDNN------LTSLPALPPELRTL 86
Query: 137 DLE--RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
++ + T + L +L + + + L L I +++T
Sbjct: 87 EVSGNQLTSLPVLPPGLL---ELSIFSNPL-THLPAL-------PSGLCKLWIFGNQLTS 135
Query: 195 --SGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSA 252
L+ LS+S +L L + L KL N + L SL
Sbjct: 136 LPVLPPGLQELSVSDN---------QLASLPALPSELCKLWAYNNQ--------LTSLPM 178
Query: 253 -LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 311
L L+++ QL+ S++ L N + + L+ L +
Sbjct: 179 LPSGLQELSVSDNQLASL-PTLPSELYKLWAYNNRLTSLPAL-------PSGLKELIVSG 230
Query: 312 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL-SGLTNLESINLSFTGISDGSL-RK 369
+ L L LK L +S + L L + L S+++ ++ L
Sbjct: 231 NRL--TSLPVL--PSELKELMVSGNR-----LTSLPMLPSGLLSLSVYRNQLT--RLPES 279
Query: 370 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 429
L LSS ++NL+ L+ T + + + S
Sbjct: 280 LIHLSSETTVNLEGNP--------LSERTL-------------------QALREITSAPG 312
Query: 430 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL-NVSNSRITSAGL 488
G + + L+L+ L + N+ S L
Sbjct: 313 YSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQEDNADAFSLFL 372
Query: 489 RHLKPLKNLRSLTLESCKVTA 509
L +N ++++
Sbjct: 373 DRLSETENFIKDAGFKAQISS 393
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 5e-04
Identities = 27/153 (17%), Positives = 51/153 (33%), Gaps = 26/153 (16%)
Query: 369 KLAGLSSLKSLNLDARQITDTGLAAL--TSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 426
+ + LN+ +T L +T L + +T LR+
Sbjct: 35 RACLNNGNAVLNVGESGLTT-----LPDCLPAHITTLVIPDNNLTS----LPALPPELRT 85
Query: 427 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 486
LE+ G LT L L++ + L + +GL L + +++TS
Sbjct: 86 LEVSGNQLTSLP-VLPPGLLELSIFSNPLT--------HLPALPSGLCKLWIFGNQLTS- 135
Query: 487 GLRHLKPLKNLRSLTLESCKVTA--NDIKRLQS 517
L L L+ L++ ++ + L
Sbjct: 136 -LPVL--PPGLQELSVSDNQLASLPALPSELCK 165
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 5e-11
Identities = 25/128 (19%), Positives = 41/128 (32%), Gaps = 8/128 (6%)
Query: 282 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGS 340
++ L I L+L I E L L ++ SD ++
Sbjct: 1 MVKLTAELIEQ--AAQYTNAVRDRELDLRGYKIPVIENLGAT--LDQFDAIDFSDNEIRK 56
Query: 341 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD-TGLAALTSLTG 399
L L L+++ ++ I L L L L + + L L SL
Sbjct: 57 --LDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKS 114
Query: 400 LTHLDLFG 407
LT+L +
Sbjct: 115 LTYLCILR 122
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 3e-06
Identities = 27/131 (20%), Positives = 44/131 (33%), Gaps = 7/131 (5%)
Query: 379 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 438
+ L A I A T+ LDL G +I +++ +
Sbjct: 2 VKLTAELIEQ--AAQYTNAVRDRELDLRGYKIPVIENL-GATLDQFDAIDFSDNEIRK-- 56
Query: 439 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS-AGLRHLKPLKNL 497
+ L L L ++ N + L L L L ++N+ + L L LK+L
Sbjct: 57 LDGFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSL 115
Query: 498 RSLTLESCKVT 508
L + VT
Sbjct: 116 TYLCILRNPVT 126
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 3e-06
Identities = 21/112 (18%), Positives = 44/112 (39%), Gaps = 6/112 (5%)
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSL-SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 284
T+ + L+L G + +++L + L ++ + ++ + F + LK L
Sbjct: 15 YTNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEIRK--LDGFPLLRRLKTLL 70
Query: 285 LGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLVNLTGLCNLKCLELSD 335
+ N I + L +L L L + + + L L L +L L +
Sbjct: 71 VNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILR 122
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 7e-05
Identities = 17/88 (19%), Positives = 31/88 (35%), Gaps = 3/88 (3%)
Query: 228 SLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 287
+L + ++ + LD L L L +N ++ G + L L L
Sbjct: 40 TLDQFDAIDFSDNEIRK--LDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTN 97
Query: 288 NEITD-ECLVHLKGLTNLESLNLDSCGI 314
N + + L L L +L L + +
Sbjct: 98 NSLVELGDLDPLASLKSLTYLCILRNPV 125
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 2e-04
Identities = 24/110 (21%), Positives = 44/110 (40%), Gaps = 9/110 (8%)
Query: 418 LRNFKNLRSLEICGGGLTDAGVKHIKD-LSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 476
N R L++ G + ++++ L ++ S N + L+ L L +L
Sbjct: 15 YTNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEI---RKLDGFPLLRRLKTL 69
Query: 477 NVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA-NDIKRLQSRDLPNLVS 525
V+N+RI G + L +L L L + + D+ L L +L
Sbjct: 70 LVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPL--ASLKSLTY 117
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 1e-10
Identities = 54/306 (17%), Positives = 99/306 (32%), Gaps = 42/306 (13%)
Query: 222 LHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 281
H L +G D LS + + NR + + + + +
Sbjct: 4 SHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSA----WRQANSNNPQ 59
Query: 282 VLNLGFNEITD--ECLVHLKGLTNLESLNLDSCGIGD--EGLVNLTGLCNLKCLELSDTQ 337
+ + + L +L L S + + L+ +L+ + +
Sbjct: 60 IETRTGRALKATADLLEDAT-QPGRVALELRSVPLPQFPDQAFRLS---HLQHMTIDAAG 115
Query: 338 VGSSGLRHL----SGLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITD--- 388
L L LE++ L+ + +L +A L+ L+ L++ ++T+
Sbjct: 116 -----LMELPDTMQQFAGLETLTLARNPLR--ALPASIASLNRLRELSIRACPELTELPE 168
Query: 389 -----TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 443
L L L L I A+ + N +NL+SL+I L+ G I
Sbjct: 169 PLASTDASGEHQGLVNLQSLRLEWTGIRSLPAS-IANLQNLKSLKIRNSPLSALG-PAIH 226
Query: 444 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITS--AGLRHLKPLKNLRSL 500
L L L+L C + G L L + + S + + + L L L
Sbjct: 227 HLPKLEELDLR-GCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHR---LTQLEKL 282
Query: 501 TLESCK 506
L C
Sbjct: 283 DLRGCV 288
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 58.8 bits (143), Expect = 1e-09
Identities = 56/375 (14%), Positives = 108/375 (28%), Gaps = 91/375 (24%)
Query: 130 LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC 189
L + T + L + + + + + N + +
Sbjct: 11 SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWR-----QANSNNPQIETRTG 65
Query: 190 SKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDS 249
+ + + ++ + L L P+ D
Sbjct: 66 RALK----------ATADLLEDA---------------TQPGRVALELRSVPLPQ-FPDQ 99
Query: 250 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT---DECLVHLKGLTNLES 306
L L ++ ++ L + + + L+ L L N + + L L
Sbjct: 100 AFRLSHLQHMTIDAAGLMEL-PDTMQQFAGLETLTLARNPLRALPAS----IASLNRLRE 154
Query: 307 LNLDSC--------GIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHL----SGLTNLE 353
L++ +C + + GL NL+ L L T +R L + L NL+
Sbjct: 155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-----IRSLPASIANLQNLK 209
Query: 354 SINLSFTGISDGSL-RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 412
S+ + + +S +L + L L+ L+L L L L
Sbjct: 210 SLKIRNSPLS--ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLIL------- 260
Query: 413 SGAAYLRNFKNLRSL--EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL-ELISG 469
++ NL +L +I L+ L L+L NL+ L LI+
Sbjct: 261 ------KDCSNLLTLPLDIH-------------RLTQLEKLDLRGCVNLS--RLPSLIAQ 299
Query: 470 LTGLVSLNVSNSRIT 484
L + V
Sbjct: 300 LPANCIILVPPHLQA 314
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 1e-05
Identities = 43/275 (15%), Positives = 77/275 (28%), Gaps = 50/275 (18%)
Query: 244 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 303
+ L + S+ + N
Sbjct: 2 GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSNN 57
Query: 304 LESLNLDSCGIGD--EGLVNLTGLCNLKCLELSDTQVGSSGLRHL----SGLTNLESINL 357
+ + + L + T LEL L L++L+ + +
Sbjct: 58 PQIETRTGRALKATADLLEDAT-QPGRVALELRSVP-----LPQFPDQAFRLSHLQHMTI 111
Query: 358 SFTGISDGSL-RKLAGLSSLKSLNLDARQITDTGL-AALTSLTGLTHLDLFGARITDSGA 415
G+ L + + L++L L + L A++ SL L L
Sbjct: 112 DAAGLM--ELPDTMQQFAGLETLTLARNPLRA--LPASIASLNRLRELS----------- 156
Query: 416 AYLRNFKNLRSL--EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL-ELISGLTG 472
+R L L + + + L +L L L + +L I+ L
Sbjct: 157 --IRACPELTELPEPLASTDASGE----HQGLVNLQSLRLEWT-GIR--SLPASIANLQN 207
Query: 473 LVSLNVSNSRITS--AGLRHLKPLKNLRSLTLESC 505
L SL + NS +++ + H L L L L C
Sbjct: 208 LKSLKIRNSPLSALGPAIHH---LPKLEELDLRGC 239
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 61.1 bits (149), Expect = 1e-10
Identities = 42/191 (21%), Positives = 68/191 (35%), Gaps = 16/191 (8%)
Query: 227 TSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 286
S +L +L+L C + + +L L L L + FS + SL+ L
Sbjct: 49 FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108
Query: 287 FNEITDECLVHLKGLTNLESLNLDS---CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 343
+ + L L+ LN+ + L NL+ L+LS ++ S
Sbjct: 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY--FSNLTNLEHLDLSSNKIQSIYC 166
Query: 344 RHLSGLTNLESINLS-------FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 396
L L + +NLS I G+ +++ LK L LD Q+
Sbjct: 167 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI----RLKELALDTNQLKSVPDGIFDR 222
Query: 397 LTGLTHLDLFG 407
LT L + L
Sbjct: 223 LTSLQKIWLHT 233
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 56.1 bits (136), Expect = 6e-09
Identities = 47/206 (22%), Positives = 72/206 (34%), Gaps = 28/206 (13%)
Query: 279 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 338
S K L+L FN + L+ L+L C I L +L L L+ +
Sbjct: 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88
Query: 339 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA-ALTSL 397
S L SGL++L+ + T ++ + L +LK LN+ I L ++L
Sbjct: 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148
Query: 398 TGLTHLDLFGARITDSGAAYLRNFKNLR----SLEICGGGLT--DAGVKH---------- 441
T L HLDL +I LR + SL++ + G
Sbjct: 149 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALD 208
Query: 442 -----------IKDLSSLTLLNLSQN 456
L+SL + L N
Sbjct: 209 TNQLKSVPDGIFDRLTSLQKIWLHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 2e-06
Identities = 40/153 (26%), Positives = 57/153 (37%), Gaps = 7/153 (4%)
Query: 374 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 433
S K+L+L + G + S L LDL I ++ +L +L + G
Sbjct: 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87
Query: 434 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS-AGLRHLK 492
+ + LSSL L NL I L L LNV+++ I S +
Sbjct: 88 IQSLALGAFSGLSSLQKLVAV-ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146
Query: 493 PLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 525
L NL L L S N I+ + DL L
Sbjct: 147 NLTNLEHLDLSS-----NKIQSIYCTDLRVLHQ 174
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 3e-06
Identities = 47/232 (20%), Positives = 72/232 (31%), Gaps = 39/232 (16%)
Query: 86 LDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTR 143
L FN + G L L R I A+ L +L L L
Sbjct: 35 LSFN---PLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQS 90
Query: 144 IHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL 203
+ G GL L+ L N + + P+ L LK L +
Sbjct: 91 LALGA--FSGLSSLQKLVAVETN-LASLENFPIGHLKTLKEL-------------NVAHN 134
Query: 204 SISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVT---AACLDSLSALGSLFY-L 259
I S F ++L L L+L + L L + L L
Sbjct: 135 LIQSFKLP-----------EYF-SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 182
Query: 260 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 311
+L+ ++ F +I LK L L N++ LT+L+ + L +
Sbjct: 183 DLSLNPMNFIQPGAFKEI-RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 233
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 9e-06
Identities = 41/208 (19%), Positives = 75/208 (36%), Gaps = 20/208 (9%)
Query: 327 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 386
+ K L+LS + G L+ ++LS I LS L +L L I
Sbjct: 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88
Query: 387 TDTGLAALTSLTGLTHLDLFGARIT--DSGAAYLRNFKNLRSLEICGGGLT---DAGVKH 441
L A + L+ L L + ++ + K L+ L + +
Sbjct: 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPI--GHLKTLKELNVAHNLIQSFKLPEY-- 144
Query: 442 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGL----VSLNVSNSRITSAGLRHLKPLKNL 497
+L++L L+LS N + + L + +SL++S + + K + L
Sbjct: 145 FSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RL 202
Query: 498 RSLTLESCKVTANDIKRLQSRDLPNLVS 525
+ L L++ N +K + L S
Sbjct: 203 KELALDT-----NQLKSVPDGIFDRLTS 225
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 59.8 bits (144), Expect = 1e-09
Identities = 41/231 (17%), Positives = 80/231 (34%), Gaps = 16/231 (6%)
Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISC--SKVTDSGIAYLKGLSISSVIFILCSMIIR 218
+ + + L ++S S V S + K L C + I
Sbjct: 330 ECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTII 389
Query: 219 LFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG 278
L + +K TL L ++ + + + +L L ++ K
Sbjct: 390 LLMRALDPLLYEKETLQYFST-------LKAVDPMRAAYLDDLRSKFLLENSVLKMEYAD 442
Query: 279 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 338
+VL+L ++T L HL+ L + L+L + L L L+ L+ SD +
Sbjct: 443 V-RVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRL-RALPPALAALRCLEVLQASDNAL 498
Query: 339 GSSGLRHLSGLTNLESINLSFTGISD-GSLRKLAGLSSLKSLNLDARQITD 388
+ + ++ L L+ + L + +++ L L LNL +
Sbjct: 499 EN--VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 547
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 59.4 bits (143), Expect = 2e-09
Identities = 47/262 (17%), Positives = 89/262 (33%), Gaps = 50/262 (19%)
Query: 271 CEKFSKIGSLKVLNLGFNEIT--DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
C + L L + T L K L LE + LT + +
Sbjct: 342 CRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEP---------ENKWCLLTIILLM 392
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS-----SLKSLNLDA 383
+ L+ L++ S L ++ + ++ + ++ L+L
Sbjct: 393 RALDPL--LYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAH 450
Query: 384 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 443
+ +T L L L +THLDL + LR+L +
Sbjct: 451 KDLTV--LCHLEQLLLVTHLDL--------------SHNRLRALP-----------PALA 483
Query: 444 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS-AGLRHLKPLKNLRSLTL 502
L L +L S N L ++ ++ L L L + N+R+ A ++ L L L L
Sbjct: 484 ALRCLEVLQASDN-ALE--NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNL 540
Query: 503 ESCKVTANDIKRLQSRD-LPNL 523
+ + + + + + LP++
Sbjct: 541 QGNSLCQEEGIQERLAEMLPSV 562
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 59.1 bits (143), Expect = 1e-09
Identities = 38/233 (16%), Positives = 68/233 (29%), Gaps = 13/233 (5%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
N L F ++ G +L + +N+ + F+ L L ++ +E+
Sbjct: 30 RNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88
Query: 141 C---TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC-SKVTDSG 196
I+ + L L+ L I I L I +
Sbjct: 89 ANNLLYINPEA--FQNLPNLQYLLIS-NTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE 145
Query: 197 IAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSL 256
GLS SVI L I+ F Q L + + D
Sbjct: 146 RNSFVGLSFESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGP 204
Query: 257 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 309
L+++R ++ + L+ + + L L+ L L +L
Sbjct: 205 VILDISRTRIHSLPSYGLENLKKLRARSTYNL----KKLPTLEKLVALMEASL 253
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 55.6 bits (134), Expect = 2e-08
Identities = 39/233 (16%), Positives = 75/233 (32%), Gaps = 12/233 (5%)
Query: 232 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNL-GFNE 289
L + + S G L + +++ L + FS + L + + N
Sbjct: 32 AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91
Query: 290 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD----TQVGSSGLRH 345
+ + L NL+ L + + GI V+ L++ D + +
Sbjct: 92 LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVG 151
Query: 346 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 405
LS + L+ GI + G + D + + +G LD+
Sbjct: 152 LS--FESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDI 209
Query: 406 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 458
RI + L N K LR+ L ++ L +L +L+ +
Sbjct: 210 SRTRIHSLPSYGLENLKKLRARST--YNLKKLPT--LEKLVALMEASLTYPSH 258
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 51.8 bits (124), Expect = 2e-07
Identities = 31/207 (14%), Positives = 60/207 (28%), Gaps = 12/207 (5%)
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285
L L ++ + + ++ L +L YL ++ + +L++
Sbjct: 78 LPKLHEIRIEK--ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDI 135
Query: 286 GFN----EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 341
N I V L L L+ GI + G + + +
Sbjct: 136 QDNINIHTIERNSFVGLS--FESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEEL 193
Query: 342 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 401
G + +++S T I L L L++ + + L L L L
Sbjct: 194 PNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKK--LPTLEKLVALM 249
Query: 402 HLDLFGARITDSGAAYLRNFKNLRSLE 428
L + A + R L +
Sbjct: 250 EASLTYPSHCCAFANWRRQISELHPIC 276
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 49.1 bits (117), Expect = 2e-06
Identities = 43/233 (18%), Positives = 72/233 (30%), Gaps = 39/233 (16%)
Query: 279 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-------EGLVNLTGLCNLKCL 331
+ L ++ G +LE + + + + L L + K
Sbjct: 31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90
Query: 332 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTG 390
L L NL+ + +S TGI L++ D I
Sbjct: 91 NLLYINPE-----AFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE 145
Query: 391 LAALTSLTG-LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 449
+ L+ L L I + + + L
Sbjct: 146 RNSFVGLSFESVILWLNKNGIQEIHN-------------------------SAFNGTQLD 180
Query: 450 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 502
LNLS N NL + ++ G +G V L++S +RI S L+ LK LR+ +
Sbjct: 181 ELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST 233
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 3e-09
Identities = 25/132 (18%), Positives = 49/132 (37%), Gaps = 18/132 (13%)
Query: 374 SSLKSLNL-DARQITDTGLA----ALTSLTGLTHLDLFGARITDSGAAY----LRNFKNL 424
L+ +NL + I L AL + T + + G R D A L+ L
Sbjct: 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTL 95
Query: 425 RSLEICGGGLTDAGVKHI----KDLSSLTLLNLSQNCN-LTDKT-LELISGL---TGLVS 475
+SL + ++ +G+ + + +SL L + L + +E+ + L T L+
Sbjct: 96 KSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLK 155
Query: 476 LNVSNSRITSAG 487
++
Sbjct: 156 FGYHFTQQGPRL 167
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 4e-08
Identities = 24/138 (17%), Positives = 45/138 (32%), Gaps = 19/138 (13%)
Query: 298 LKGLTNLESLNL-DSCGIGDEGLVNL-TGLCN---LKCLELSDTQVGSSGLRHLSGL--- 349
+LE +NL + I L L +K + T+ L+ +
Sbjct: 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKV 91
Query: 350 -TNLESINLSFTGISDGSLRKLA-GL---SSLKSLNLDAR--QITDTGLAALTSL----T 398
L+S+N+ IS + L L +SL L +D + + + + ++ T
Sbjct: 92 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNT 151
Query: 399 GLTHLDLFGARITDSGAA 416
L + A
Sbjct: 152 TLLKFGYHFTQQGPRLRA 169
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 5e-08
Identities = 24/130 (18%), Positives = 46/130 (35%), Gaps = 21/130 (16%)
Query: 255 SLFYLNLNR-CQLSDDGCEKFSKI----GSLKVLNLGFNEITDECLVH----LKGLTNLE 305
L +NLN + + ++ +K ++ D LK L+
Sbjct: 37 DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLK 96
Query: 306 SLNLDSCGIGDEGLVNL-------TGLCNLKCLELSDTQVGSSGLRHLSGL----TNLES 354
SLN++S I G++ L T L L+ ++ +G++ ++ + T L
Sbjct: 97 SLNVESNFISGSGILALVEALQSNTSLIELR-IDNQSQPLGNNVEMEIANMLEKNTTLLK 155
Query: 355 INLSFTGISD 364
FT
Sbjct: 156 FGYHFTQQGP 165
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 3e-07
Identities = 28/146 (19%), Positives = 50/146 (34%), Gaps = 19/146 (13%)
Query: 331 LELSDTQVGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGL----SSLKSLNLDARQ 385
E + T V + R + +LE +NL+ I +L+ A + +K ++ +
Sbjct: 17 EEPNSTDVEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR 76
Query: 386 ITDTG---LA-ALTSLTGLTHLDLFGARITDSGAAYLRNF----KNLRSLEI--CGGGLT 435
D LA L L L++ I+ SG L +L L I L
Sbjct: 77 SNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLG 136
Query: 436 DAGVKHIKDL----SSLTLLNLSQNC 457
+ I ++ ++L
Sbjct: 137 NNVEMEIANMLEKNTTLLKFGYHFTQ 162
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 3e-09
Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 4/111 (3%)
Query: 299 KGLTNLESLNLDSCGIGDEGLVNLTG-LCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 357
+ ++++ L LD+ + L LT L+ L + + S + +L L L+ + L
Sbjct: 14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS--IANLPKLNKLKKLEL 71
Query: 358 SFTGISDGSLRKLAGLSSLKSLNLDARQITD-TGLAALTSLTGLTHLDLFG 407
S +S G +L LNL +I D + + L L L LDLF
Sbjct: 72 SDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFN 122
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 3e-07
Identities = 28/110 (25%), Positives = 42/110 (38%), Gaps = 4/110 (3%)
Query: 228 SLQKLTLLNLEGCPVTAACLDSL-SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 286
+ + L L+ L+ L L +L+ L+ K+ LK L L
Sbjct: 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS--IANLPKLNKLKKLELS 72
Query: 287 FNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLVNLTGLCNLKCLELSD 335
N ++ V + NL LNL I D + L L NLK L+L +
Sbjct: 73 DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFN 122
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 2e-06
Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 5/115 (4%)
Query: 396 SLTGLTHLDLFGARITD-SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 454
+ + + L L +R + F+ L L GLT + ++ L+ L L LS
Sbjct: 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS--IANLPKLNKLKKLELS 72
Query: 455 QNCNLTDKTLELISGLTGLVSLNVSNSRITS-AGLRHLKPLKNLRSLTLESCKVT 508
N ++ L L LN+S ++I + + LK L+NL+SL L +C+VT
Sbjct: 73 DN-RVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 2e-04
Identities = 24/109 (22%), Positives = 45/109 (41%), Gaps = 7/109 (6%)
Query: 419 RNFKNLRSLEICGGGLTDAGVKHIKD-LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 477
R +++ L + + ++ + D L L+ N LT + + L L L
Sbjct: 14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTI-NVGLTS--IANLPKLNKLKKLE 70
Query: 478 VSNSRITSAGLRHLKPLKNLRSLTLESCKVTA-NDIKRLQSRDLPNLVS 525
+S++R++ + NL L L K+ + I+ L + L NL S
Sbjct: 71 LSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPL--KKLENLKS 117
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 53.6 bits (129), Expect = 1e-08
Identities = 34/114 (29%), Positives = 49/114 (42%), Gaps = 4/114 (3%)
Query: 301 LTNLESLNLDSCGIGDEGLVNLTG-LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 359
+ L LD+C D + LT NL+ L L + + S + +L L L+ + LS
Sbjct: 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS--VSNLPKLPKLKKLELSE 80
Query: 360 TGISDGSLRKLAGLSSLKSLNLDARQITDTG-LAALTSLTGLTHLDLFGARITD 412
I G L +L LNL ++ D L L L L LDLF +T+
Sbjct: 81 NRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTN 134
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 8e-07
Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 3/91 (3%)
Query: 225 FLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 284
L L+L + + +L L L L L+ ++ K+ +L LN
Sbjct: 44 LTAEFVNLEFLSLINVGLI--SVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101
Query: 285 LGFNEITD-ECLVHLKGLTNLESLNLDSCGI 314
L N++ D L LK L L+SL+L +C +
Sbjct: 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEV 132
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 1e-06
Identities = 29/110 (26%), Positives = 44/110 (40%), Gaps = 4/110 (3%)
Query: 228 SLQKLTLLNLEGCPVTAACLDSL-SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 286
+ + L L+ C ++ L + +L +L+L L K+ LK L L
Sbjct: 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS--VSNLPKLPKLKKLELS 79
Query: 287 FNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLVNLTGLCNLKCLELSD 335
N I + + L NL LNL + D L L L LK L+L +
Sbjct: 80 ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFN 129
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 2e-06
Identities = 36/138 (26%), Positives = 57/138 (41%), Gaps = 6/138 (4%)
Query: 372 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 431
G S +++ R + ++ L LD + F NL L +
Sbjct: 1 GSSGSSGMDMKRRIHLELRNRTPAAVRELV-LDNCKSNDG-KIEGLTAEFVNLEFLSLIN 58
Query: 432 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS-AGLRH 490
GL V ++ L L L LS+N + L L L LN+S +++ + L
Sbjct: 59 VGLIS--VSNLPKLPKLKKLELSEN-RIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEP 115
Query: 491 LKPLKNLRSLTLESCKVT 508
LK L+ L+SL L +C+VT
Sbjct: 116 LKKLECLKSLDLFNCEVT 133
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 3e-05
Identities = 32/133 (24%), Positives = 56/133 (42%), Gaps = 5/133 (3%)
Query: 259 LNLNRCQLSDDGCEKF-SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 317
L L+ C+ +D E ++ +L+ L+L + + +L L L+ L L I
Sbjct: 29 LVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS--VSNLPKLPKLKKLELSENRIFGG 86
Query: 318 GLVNLTGLCNLKCLELSDTQVGS-SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 376
+ L NL L LS ++ S L L L L+S++L +++ + + + L
Sbjct: 87 LDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLL 146
Query: 377 KSLN-LDARQITD 388
L LD D
Sbjct: 147 PQLTYLDGYDRED 159
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 39.7 bits (93), Expect = 7e-04
Identities = 25/109 (22%), Positives = 42/109 (38%), Gaps = 7/109 (6%)
Query: 419 RNFKNLRSLEICGGGLTDAGVKHIKD-LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 477
R +R L + D ++ + +L L+L N L + + L L L
Sbjct: 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLI-NVGLIS--VSNLPKLPKLKKLE 77
Query: 478 VSNSRITSAGLRHLKPLKNLRSLTLESCKVTA-NDIKRLQSRDLPNLVS 525
+S +RI + L NL L L K+ + ++ L + L L S
Sbjct: 78 LSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPL--KKLECLKS 124
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 54.1 bits (130), Expect = 4e-08
Identities = 27/155 (17%), Positives = 46/155 (29%), Gaps = 28/155 (18%)
Query: 279 SLKVLNLGFNEITD-ECLVHLKGLTNLESLNLDSCGIGD------EGLVNLT-------- 323
+L+L N ++ LTNL SL L + + NL
Sbjct: 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99
Query: 324 ----------GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS---FTGISDGSLRKL 370
L L+ L L + + + L+ + LS + ++
Sbjct: 100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDG 159
Query: 371 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 405
L L L+L + ++ L L L L
Sbjct: 160 NKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGL 194
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 9e-06
Identities = 43/231 (18%), Positives = 76/231 (32%), Gaps = 31/231 (13%)
Query: 86 LDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC--TR 143
L N ++ L+NL SL +N + +AF + NL LDL
Sbjct: 46 LSHNNLSRLRAEWT--PTRLTNLHSLLLS-HNHLNFISSEAFVPVPNLRYLDLSSNHLHT 102
Query: 144 IHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL 203
+ L L LE L + + N I D + L+ L +S ++++
Sbjct: 103 LDEFL--FSDLQALEVLLL-YNNHIVVVDRNAFEDMAQLQKLYLSQNQIS---------- 149
Query: 204 SISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLF-YLNLN 262
+ L L L L L + + + L L A YL+ N
Sbjct: 150 ----------RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199
Query: 263 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL--VHLKGLTNLESLNLDS 311
+ + FS ++ ++ + C+ L + +L+ N
Sbjct: 200 PLECDCKLYQLFSHWQYRQLSSVMDFQEDLYCMHSKKLHNIFSLDFFNCSE 250
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 3e-05
Identities = 37/162 (22%), Positives = 58/162 (35%), Gaps = 14/162 (8%)
Query: 374 SSLKSLNLDARQITD-TGLAALTSLTGLTHLDLFGARIT--DSGAAYLRNFKNLRSLEIC 430
S L+L ++ T LT L L L + S A NLR L++
Sbjct: 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEA--FVPVPNLRYLDLS 96
Query: 431 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS---AG 487
L DL +L +L L N ++ + L L +S ++I+
Sbjct: 97 SNHLHTLDEFLFSDLQALEVLLLYNN-HIVVVDRNAFEDMAQLQKLYLSQNQISRFPVEL 155
Query: 488 LRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 529
++ L L L L S N +K+L DL L ++
Sbjct: 156 IKDGNKLPKLMLLDLSS-----NKLKKLPLTDLQKLPAWVKN 192
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 4e-04
Identities = 34/210 (16%), Positives = 61/210 (29%), Gaps = 58/210 (27%)
Query: 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLESLNIK 163
S L NN + L NL L L I
Sbjct: 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEA--------------- 83
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLH 223
+ NL+ L +S + + ++ +F
Sbjct: 84 ------------FVPVPNLRYLDLSSNHLH----------TLDEFLF------------- 108
Query: 224 VFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS---DDGCEKFSKIGSL 280
+ LQ L +L L + ++ + L L L++ Q+S + + +K+ L
Sbjct: 109 ---SDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKL 165
Query: 281 KVLNLGFNEITDECLVHLKGLTNLESLNLD 310
+L+L N++ L L+ L L
Sbjct: 166 MLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 53.4 bits (128), Expect = 7e-08
Identities = 36/245 (14%), Positives = 74/245 (30%), Gaps = 18/245 (7%)
Query: 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCS 214
+ + + I + +SGL L + + + G ++ + S
Sbjct: 73 LTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS 132
Query: 215 MIIRL-FCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC-- 271
R + + L +L++ + + +L L+L+ +
Sbjct: 133 WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI 192
Query: 272 -----EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI-GDEGLVNLTGL 325
KF + L + N G + C L+ L+L + G +
Sbjct: 193 SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252
Query: 326 CNLKCLELSDTQVGSSGLRHLSG--LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 383
L L LS T L+ + L ++LS+ + L + +L+L
Sbjct: 253 SQLNSLNLSFTG-----LKQVPKGLPAKLSVLDLSYNRLD--RNPSPDELPQVGNLSLKG 305
Query: 384 RQITD 388
D
Sbjct: 306 NPFLD 310
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 2e-06
Identities = 45/249 (18%), Positives = 77/249 (30%), Gaps = 27/249 (10%)
Query: 255 SLFYLNLNRCQLSDDGCEKFSKIGS---LKVLNLGFNEITDECLVHLKGLT--NLESLNL 309
SL L + ++ ++ L+ L L E+T L T +L LNL
Sbjct: 69 SLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNL 128
Query: 310 DSCGIGDEGL----VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 365
+ + LK L ++ + + L +++LS
Sbjct: 129 RNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGE 188
Query: 366 S-------LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS-GAAY 417
K L L N + A + L LDL + D+ GA
Sbjct: 189 RGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS 248
Query: 418 LRNFKNLRSLEICGGGLTDAGVKHIKD--LSSLTLLNLSQNCNLTDKTLELISGLTGLVS 475
L SL + GL + + L++L+LS N L L + +
Sbjct: 249 CDWPSQLNSLNLSFTGLK-----QVPKGLPAKLSVLDLSYN-RLD--RNPSPDELPQVGN 300
Query: 476 LNVSNSRIT 484
L++ +
Sbjct: 301 LSLKGNPFL 309
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 48.0 bits (114), Expect = 3e-06
Identities = 39/222 (17%), Positives = 64/222 (28%), Gaps = 28/222 (12%)
Query: 274 FSKIGSLKVLNLGFNEITDECLVHLK---GLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 330
K SLK L + I L G++ L+ L L++ + L
Sbjct: 64 IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDL 123
Query: 331 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 390
L+ LR++S T + + LK L++ +
Sbjct: 124 NILN--------LRNVSWATRDAWLAELQQWL----------KPGLKVLSIAQAHSLNFS 165
Query: 391 LAALTSLTGLTHLDL----FGARITDSGAAYLRNFKNLRSLEICGGGLT---DAGVKHIK 443
+ L+ LDL A F L+ L + G+
Sbjct: 166 CEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAA 225
Query: 444 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 485
L L+LS N + L SLN+S + +
Sbjct: 226 ARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ 267
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 5e-06
Identities = 52/283 (18%), Positives = 89/283 (31%), Gaps = 35/283 (12%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSG--IAYLKGLSISSVIFILCSMIIRLFCLH 223
NC+ +D++ G +L+ L D G +K LS+ + + R+
Sbjct: 29 NCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGA 88
Query: 224 VFLTSLQKLTLLNLEGCPVTAACLDSLSALG--SLFYLNLNRCQLSDDGCE----KFSKI 277
+ + + L L LE VT L L LNL + +
Sbjct: 89 LRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLK 148
Query: 278 GSLKVLNLGFNEITDECLVHLKGLTNLESLNL-DSCGIGDEGLVN------LTGLCNLKC 330
LKVL++ + ++ L +L+L D+ +G+ GL++ L L
Sbjct: 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLAL 208
Query: 331 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG-SLRKLAGLSSLKSLNLDARQITD- 388
+ L+ ++LS + D S L SLNL +
Sbjct: 209 RNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQV 268
Query: 389 ------------------TGLAALTSLTGLTHLDLFGARITDS 413
+ L + +L L G DS
Sbjct: 269 PKGLPAKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNPFLDS 311
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 2e-05
Identities = 34/180 (18%), Positives = 61/180 (33%), Gaps = 13/180 (7%)
Query: 333 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 392
+D + ++ LS L L ++ G+S L+ L L+ ++T T
Sbjct: 55 EADLGQFTDIIKSLS-LKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113
Query: 393 ALTSLTG--LTHLDLFGARITDSGAAYLRNF----KNLRSLEICGGGLTDAGVKHIKDLS 446
L TG L L+L A L+ L I + + ++
Sbjct: 114 PLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP 173
Query: 447 SLTLLNLSQNCNLTDKTLE---LISGLTGLVSLNVSNSRITS---AGLRHLKPLKNLRSL 500
+L+ L+LS N L ++ L L L + N+ + + L+ L
Sbjct: 174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGL 233
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 8e-08
Identities = 33/150 (22%), Positives = 64/150 (42%), Gaps = 16/150 (10%)
Query: 249 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN-LESL 307
+LS L + +L L+ + S + +L++L+LG N I + +L + + LE L
Sbjct: 43 TLSTLKACKHLALSTNNIEK--ISSLSGMENLRILSLGRNLIKK--IENLDAVADTLEEL 98
Query: 308 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS-SGLRHLSGLTNLESINLSFTGISDGS 366
+ I L + L NL+ L +S+ ++ + + L+ L LE + L+ + +
Sbjct: 99 WISYNQIAS--LSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDY 156
Query: 367 LRKLAG-------LSSLKSLN-LDARQITD 388
A + L +L LD +
Sbjct: 157 KENNATSEYRIEVVKRLPNLKKLDGMPVDV 186
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 1e-07
Identities = 28/113 (24%), Positives = 45/113 (39%), Gaps = 8/113 (7%)
Query: 321 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD-GSLRKLAGLSSLKSL 379
L+ L K L LS + + LSG+ NL ++L I +L + +L+ L
Sbjct: 43 TLSTLKACKHLALSTNNIEK--ISSLSGMENLRILSLGRNLIKKIENLDAV--ADTLEEL 98
Query: 380 NLDARQITDTGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFKNLRSLEICG 431
+ QI L+ + L L L + +IT+ L L L + G
Sbjct: 99 WISYNQIAS--LSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAG 149
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 2e-07
Identities = 37/157 (23%), Positives = 62/157 (39%), Gaps = 20/157 (12%)
Query: 378 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFKNLRSLEICGGGLTD 436
L+ I A L++L HL L I S L +NLR L + +
Sbjct: 29 ELHGMIPPIEKMD-ATLSTLKACKHLALSTNNIEKISS---LSGMENLRILSLGRNLIKK 84
Query: 437 AGVKHIKDLS-SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS-AGLRHLKPL 494
++++ ++ +L L +S N + L I L L L +SN++IT+ + L L
Sbjct: 85 --IENLDAVADTLEELWISYN-QIAS--LSGIEKLVNLRVLYMSNNKITNWGEIDKLAAL 139
Query: 495 KNLRSLTLESCKVTANDIKRLQSRD--------LPNL 523
L L L + + + + + LPNL
Sbjct: 140 DKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNL 176
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 7e-04
Identities = 27/113 (23%), Positives = 47/113 (41%), Gaps = 13/113 (11%)
Query: 76 HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
L + L + I + L G+ NL LS RN + + A A L +
Sbjct: 43 TLSTLKACKHLALSTN-NIEK--ISSLSGMENLRILSLGRNLIKKIENLDAVAD--TLEE 97
Query: 136 LDLERCTRIHGGLVNLKGLMKLESLNIKW--CNCITD-SDMKPLSGLTNLKSL 185
L + + + +L G+ KL +L + + N IT+ ++ L+ L L+ L
Sbjct: 98 LWIS-----YNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDL 145
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 53.7 bits (128), Expect = 1e-07
Identities = 62/340 (18%), Positives = 104/340 (30%), Gaps = 74/340 (21%)
Query: 222 LHVFLTSLQKLTLLNLEG-------CPVTAACLDS--LSAL-GSLFYLNLNRC------- 264
L L L+ + ++G CL + +F+LNL C
Sbjct: 140 LRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL 199
Query: 265 --------QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL-NLDSCGIG 315
Q+ + + ++K L + I E LK L L +
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIK---LRIHSIQAELRRLLKSKPYENCLLVLL--NVQ 254
Query: 316 DEGLVNLTGLCNLKCLEL---SDTQV----GSSGLRHLSGLTNLESINLSFTGISDGSLR 368
+ N NL C L QV ++ H+S L+ +++ T D
Sbjct: 255 NAKAWNAF---NLSCKILLTTRFKQVTDFLSAATTTHIS----LDHHSMTLT--PDEVKS 305
Query: 369 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL---- 424
L K L+ + L T L + I D G A N+K++
Sbjct: 306 LLL-----KYLDCRPQD-----LPREVLTTNPRRLSIIAESIRD-GLATWDNWKHVNCDK 354
Query: 425 --RSLEICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLELI--SGLTGLVSLNVS 479
+E L A + + LS + ++ L LI + V + V+
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLSV-----FPPSAHIPTILLSLIWFDVIKSDVMVVVN 409
Query: 480 NSRITSAGLRHLKPLK-NLRSLTLESCKVTANDIKRLQSR 518
S + K ++ S+ LE KV + L
Sbjct: 410 KLHKYSLVEKQPKESTISIPSIYLEL-KVKLENEYALHRS 448
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 53.1 bits (127), Expect = 1e-07
Identities = 44/246 (17%), Positives = 82/246 (33%), Gaps = 32/246 (13%)
Query: 259 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG--LTNLESLNLDSCGIGD 316
N +S + FS + L E +E + LK + L L+ +
Sbjct: 15 QNSFYNTISGTYADYFSAWDKWEKQAL-PGENRNEAVSLLKECLINQFSELQLNRLNLSS 73
Query: 317 EGLVNLTGLCNLKCLELSDTQVGSSGLRHL-SGLTNLESINLSFTGISDGSLRKLAGLSS 375
+ + LE++ L L +LE ++ +S +L +L +S
Sbjct: 74 ---LPDNLPPQITVLEITQNA-----LISLPELPASLEYLDACDNRLS--TLPEL--PAS 121
Query: 376 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 435
LK L++D Q+T L +++ ++T +L L + LT
Sbjct: 122 LKHLDVDNNQLTMLP----ELPALLEYINADNNQLTMLPEL----PTSLEVLSVRNNQLT 173
Query: 436 DAGVKHIKDLSSLTLLNLSQNC--NLTDKTLELISGLTGLVSLNVSNSRITS--AGLRHL 491
+ SL L++S N +L + + +RIT + L
Sbjct: 174 FL----PELPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSL 229
Query: 492 KPLKNL 497
P +
Sbjct: 230 DPTCTI 235
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 45.3 bits (107), Expect = 4e-05
Identities = 40/243 (16%), Positives = 81/243 (33%), Gaps = 47/243 (19%)
Query: 175 PLSGLTNLKSLQISCSKVT---DSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQK 231
+ LQ++ ++ D+ + L I+ L L SL+
Sbjct: 54 KECLINQFSELQLNRLNLSSLPDNLPPQITVLEITQN---------ALISLPELPASLEY 104
Query: 232 LTLLNLEGCPVTAACLDSL-SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 290
L + L +L SL +L+++ QL+ L+ +N N++
Sbjct: 105 LDACDNR--------LSTLPELPASLKHLDVDNNQLTMLP----ELPALLEYINADNNQL 152
Query: 291 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL---- 346
T L L T+LE L++ + + L L +L+ L++S L L
Sbjct: 153 T--MLPEL--PTSLEVLSVRNNQLTF--LPEL--PESLEALDVSTNL-----LESLPAVP 199
Query: 347 SGLTNLESINLSFTGISDGSLRKL----AGLSSLKSLNLDARQITDTGLAALTSLTGLTH 402
+ E + F + + + L ++ L+ ++ +L+ T
Sbjct: 200 VRNHHSEETEIFF-RCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPD 258
Query: 403 LDL 405
Sbjct: 259 YHG 261
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 2e-07
Identities = 42/237 (17%), Positives = 80/237 (33%), Gaps = 49/237 (20%)
Query: 279 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG----IGDEGLVNLTGLCNLKCLELS 334
S + L L + L N+ + + + NL+ + +E+
Sbjct: 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLS---KVTHIEIR 88
Query: 335 DTQVGSSGLRHLS-----GLTNLESINLSFTGISD-GSLRKLAGLSSLKSLNL-DARQIT 387
+T+ L ++ L L+ + + TG+ L K+ L + D +T
Sbjct: 89 NTR----NLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMT 144
Query: 388 DTGLAALTSLTGLT-HLDLFGARIT--DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 444
+ A L T L L+ T A F +
Sbjct: 145 SIPVNAFQGLCNETLTLKLYNNGFTSVQGYA-----F----------------------N 177
Query: 445 LSSLTLLNLSQNCNLTDKTLELISGL-TGLVSLNVSNSRITSAGLRHLKPLKNLRSL 500
+ L + L++N LT + G+ +G L+VS + +T+ + L+ LK L +
Sbjct: 178 GTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIAR 234
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 9e-06
Identities = 35/233 (15%), Positives = 77/233 (33%), Gaps = 26/233 (11%)
Query: 213 CSMIIRLFCLHVFLTSL----QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR-CQLS 267
C + + L L + + S L ++ + ++ L
Sbjct: 10 CHQEEDFRVTCKDIQRIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ 69
Query: 268 DDGCEKFSKIGSLKVLNLGFNEITDECLVHL-----KGLTNLESLNLDSCGIGD-EGLVN 321
F + + + + L ++ K L L+ L + + G+ L
Sbjct: 70 QLESHSFYNLSKVTHIEIRNTRN----LTYIDPDALKELPLLKFLGIFNTGLKMFPDLTK 125
Query: 322 LTGLCNLKCLELSD-TQVGSSGLRHLSGLTN-LESINLS---FTGISDGSLRKLAGLSSL 376
+ LE++D + S + GL N ++ L FT + + + L
Sbjct: 126 VYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFN----GTKL 181
Query: 377 KSLNLDA-RQITDTGLAALTSL-TGLTHLDLFGARITDSGAAYLRNFKNLRSL 427
++ L+ + +T A + +G + LD+ +T + L + K L +
Sbjct: 182 DAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIAR 234
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 1e-04
Identities = 29/211 (13%), Positives = 66/211 (31%), Gaps = 11/211 (5%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
+ Q+L + L N++ + + + +F L + +++
Sbjct: 31 PSTQTLKLIET-HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89
Query: 141 C---TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC-SKVTDSG 196
T I LK L L+ L I D+ + L+I+ +T
Sbjct: 90 TRNLTYIDPDA--LKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIP 147
Query: 197 IAYLKGLSISSVIFILCSMIIRLFCLHVF-LTSLQKLTLL-NLEGCPVTAACLDSLSALG 254
+ +GL ++ L + + F T L + L N + + +
Sbjct: 148 VNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSG- 206
Query: 255 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285
L++++ ++ + + L N
Sbjct: 207 -PSLLDVSQTSVTALPSKGLEHLKELIARNT 236
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 5e-04
Identities = 21/143 (14%), Positives = 43/143 (30%), Gaps = 7/143 (4%)
Query: 386 ITDTGLAALTSL-TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIK 443
+T + + SL L L + + N N+ + + L
Sbjct: 18 VTCKDIQRIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFY 77
Query: 444 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS-AGLRHLKPLKNLRSLTL 502
+LS +T + + NLT + + L L L + N+ + L + L +
Sbjct: 78 NLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEI 137
Query: 503 ESCKVTANDIKRLQSRDLPNLVS 525
+ + L +
Sbjct: 138 TD----NPYMTSIPVNAFQGLCN 156
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 2e-07
Identities = 37/151 (24%), Positives = 55/151 (36%), Gaps = 9/151 (5%)
Query: 258 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 317
L+L+ L L LNL E+T L L L +L+L +
Sbjct: 35 ILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK--LQVDGTLPVLGTLDLSHNQLQSL 92
Query: 318 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS---FTGISDGSLRKLAGLS 374
L+ L L L++S ++ S L L GL L+ + L + G L
Sbjct: 93 PLL-GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP---TP 148
Query: 375 SLKSLNLDARQITDTGLAALTSLTGLTHLDL 405
L+ L+L +T+ L L L L L
Sbjct: 149 KLEKLSLANNNLTELPAGLLNGLENLDTLLL 179
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 2e-06
Identities = 38/158 (24%), Positives = 60/158 (37%), Gaps = 9/158 (5%)
Query: 302 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 361
+ L+L + L L L L L ++ L+ L L +++LS
Sbjct: 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK--LQVDGTLPVLGTLDLSHNQ 88
Query: 362 ISDGSL-RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 420
+ SL L +L L++ ++T L AL L L L L G + L
Sbjct: 89 LQ--SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146
Query: 421 FKNLRSLEICGGGLTD--AGVKHIKDLSSLTLLNLSQN 456
L L + LT+ AG+ + L +L L L +N
Sbjct: 147 TPKLEKLSLANNNLTELPAGL--LNGLENLDTLLLQEN 182
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 4e-06
Identities = 42/181 (23%), Positives = 68/181 (37%), Gaps = 15/181 (8%)
Query: 350 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 409
+ ++LS + SL L + L LNLD ++T L +L L LDL +
Sbjct: 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK--LQVDGTLPVLGTLDLSHNQ 88
Query: 410 ITDSGAAYLRNFKNLRSLEICGGGLTD--AGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 467
+ S + L L++ LT G ++ L L L L N L L+
Sbjct: 89 LQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGA--LRGLGELQELYLKGN-ELKTLPPGLL 144
Query: 468 SGLTGLVSLNVSNSRITS------AGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLP 521
+ L L+++N+ +T GL +L L L+ +L + L L
Sbjct: 145 TPTPKLEKLSLANNNLTELPAGLLNGLENLDTL-LLQENSLYTIPKGFFGSHLLPFAFLH 203
Query: 522 N 522
Sbjct: 204 G 204
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 6e-05
Identities = 38/154 (24%), Positives = 61/154 (39%), Gaps = 14/154 (9%)
Query: 374 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 433
L+L + LA L T LT L+L A +T L +L++
Sbjct: 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDLSHNQ 88
Query: 434 LTD-AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 492
L + + L +LT+L++S N LT L + GL L L + + + + L
Sbjct: 89 LQSLPLL--GQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLT 145
Query: 493 PLKNLRSLTLESCKVTANDIKRLQS---RDLPNL 523
P L L+L + N++ L + L NL
Sbjct: 146 PTPKLEKLSLAN-----NNLTELPAGLLNGLENL 174
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 3e-07
Identities = 45/175 (25%), Positives = 69/175 (39%), Gaps = 10/175 (5%)
Query: 258 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG-- 315
L+L +LS + F ++ L++L L N++ K L NLE+L + +
Sbjct: 41 KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQAL 100
Query: 316 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS---FTGISDGSLRKLAG 372
G+ L NL L L Q+ S R LT L ++L + G KL
Sbjct: 101 PIGV--FDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKL-- 156
Query: 373 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 427
+SLK L L Q+ A LT L L L ++ + + L+ L
Sbjct: 157 -TSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKML 210
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 5e-07
Identities = 47/206 (22%), Positives = 73/206 (35%), Gaps = 35/206 (16%)
Query: 302 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS-----GLTNLESIN 356
+ + L+L S + L L+ L L+D + L+ L L NLE++
Sbjct: 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-----LQTLPAGIFKELKNLETLW 91
Query: 357 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 416
++ + + L +L L LD Q+ SLT LT+L L +
Sbjct: 92 VTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ----- 146
Query: 417 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 476
SL GV L+SL L L N L LT L +L
Sbjct: 147 ---------SLP--------KGV--FDKLTSLKELRLYNN-QLKRVPEGAFDKLTELKTL 186
Query: 477 NVSNSRITSAGLRHLKPLKNLRSLTL 502
+ N+++ L+ L+ L L
Sbjct: 187 KLDNNQLKRVPEGAFDSLEKLKMLQL 212
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 6e-07
Identities = 41/186 (22%), Positives = 59/186 (31%), Gaps = 34/186 (18%)
Query: 227 TSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 286
L KL LL L + L +L L + +L F ++ +L L L
Sbjct: 58 HRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD 117
Query: 287 FNEITDECLVHL-----KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 341
N++ L LT L L+L L L
Sbjct: 118 RNQLK-----SLPPRVFDSLTKLTYLSLGYN--------ELQSL--------------PK 150
Query: 342 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 401
G+ LT+L+ + L + L+ LK+L LD Q+ A SL L
Sbjct: 151 GV--FDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLK 208
Query: 402 HLDLFG 407
L L
Sbjct: 209 MLQLQE 214
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 1e-05
Identities = 34/178 (19%), Positives = 63/178 (35%), Gaps = 10/178 (5%)
Query: 350 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 409
+ + ++L +S + L+ L+ L L+ ++ L L L + +
Sbjct: 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK 96
Query: 410 ITDSGAAYLRNFKNLRSLEICGGGLTD--AGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 467
+ NL L + L V L+ LT L+L N L +
Sbjct: 97 LQALPIGVFDQLVNLAELRLDRNQLKSLPPRV--FDSLTKLTYLSLGYN-ELQSLPKGVF 153
Query: 468 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 525
LT L L + N+++ L L++L L++ N +KR+ +L
Sbjct: 154 DKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDN-----NQLKRVPEGAFDSLEK 206
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 3e-04
Identities = 45/198 (22%), Positives = 69/198 (34%), Gaps = 31/198 (15%)
Query: 116 NNAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
+N +++ KAF L L L L + G+ L LE+L + N + +
Sbjct: 46 SNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFK--ELKNLETLWVTD-NKLQALPI 102
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLT 233
L NL L++ +++ S+ +F SL KLT
Sbjct: 103 GVFDQLVNLAELRLDRNQLK----------SLPPRVF----------------DSLTKLT 136
Query: 234 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
L+L + + L SL L L QL F K+ LK L L N++
Sbjct: 137 YLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRV 196
Query: 294 CLVHLKGLTNLESLNLDS 311
L L+ L L
Sbjct: 197 PEGAFDSLEKLKMLQLQE 214
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 2e-05
Identities = 40/159 (25%), Positives = 61/159 (38%), Gaps = 20/159 (12%)
Query: 259 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS------- 311
L+L L+ F + L LNL +N++ LT L +L L +
Sbjct: 40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP 99
Query: 312 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS---FTGISDGSLR 368
G+ D L L L L Q+ S LT L+ + L+ I G+
Sbjct: 100 LGVFD-------HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFD 152
Query: 369 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 407
KL ++L++L+L Q+ A L L + LFG
Sbjct: 153 KL---TNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFG 188
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 44.8 bits (107), Expect = 3e-05
Identities = 49/247 (19%), Positives = 90/247 (36%), Gaps = 49/247 (19%)
Query: 271 CEKFSKIGSLKVLNLGFNEITDECLV--HLKGLTNLESLNLDSCGIGDEGLVNLTG---- 324
C+ ++ + L+L + + L L L L + G+ NL G
Sbjct: 43 CDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYI-------GGINNLVGPIPP 95
Query: 325 ----LCNLKCLELSDTQVGSSGL--RHLSGLTNLESINLSFTGISDGSL-RKLAGLSSLK 377
L L L ++ T V SG LS + L +++ S+ +S G+L ++ L +L
Sbjct: 96 AIAKLTQLHYLYITHTNV--SGAIPDFLSQIKTLVTLDFSYNALS-GTLPPSISSLPNLV 152
Query: 378 SLNLDARQITDT---GLAALTSL-----------TG----------LTHLDLFGARITDS 413
+ D +I+ + + L TG L +DL +
Sbjct: 153 GITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGD 212
Query: 414 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 473
+ + KN + + + L + + +L L+L N + + ++ L L
Sbjct: 213 ASVLFGSDKNTQKIHLAKNSLAFD-LGKVGLSKNLNGLDLRNN-RIYGTLPQGLTQLKFL 270
Query: 474 VSLNVSN 480
SLNVS
Sbjct: 271 HSLNVSF 277
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 42.8 bits (100), Expect = 2e-04
Identities = 16/85 (18%), Positives = 25/85 (29%), Gaps = 6/85 (7%)
Query: 80 CSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE 139
L + L HL G NLT L + ++ GL L L +
Sbjct: 7 PHGSSGLRCTRDGALDS--LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIV 64
Query: 140 RC--TRIHGGLVNLKGLMKLESLNI 162
+ + +L LN+
Sbjct: 65 KSGLRFVAPDA--FHFTPRLSRLNL 87
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 42.8 bits (100), Expect = 2e-04
Identities = 18/89 (20%), Positives = 29/89 (32%), Gaps = 11/89 (12%)
Query: 327 NLKCLELSDTQVGSSGLRHLSGLTNLESINLS----FTGISDGSLRKLAGLSSLKSLNLD 382
L+C L HL G NL + + + LR GL L++L +
Sbjct: 12 GLRCTRDGALDS----LHHLPGAENLTELYIENQQHLQHLELRDLR---GLGELRNLTIV 64
Query: 383 ARQITDTGLAALTSLTGLTHLDLFGARIT 411
+ A L+ L+L +
Sbjct: 65 KSGLRFVAPDAFHFTPRLSRLNLSFNALE 93
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 3e-04
Identities = 18/94 (19%), Positives = 31/94 (32%), Gaps = 5/94 (5%)
Query: 430 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 489
C + H+ +LT L + +L L + GL L +L + S +
Sbjct: 15 CTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPD 74
Query: 490 HLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 523
L L L N ++ L + + L
Sbjct: 75 AFHFTPRLSRLNLSF-----NALESLSWKTVQGL 103
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 41.6 bits (97), Expect = 4e-04
Identities = 23/99 (23%), Positives = 33/99 (33%), Gaps = 4/99 (4%)
Query: 72 SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI 131
L HL NL L + L LRGL L +L+ + + AF
Sbjct: 22 DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTI-VKSGLRFVAPDAFHFTP 80
Query: 132 NLVKLDLERC--TRIHGGLVNLKGLMKLESLNIKW-CNC 167
L +L+L + V L +L C+C
Sbjct: 81 RLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSC 119
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 3e-04
Identities = 32/134 (23%), Positives = 50/134 (37%), Gaps = 5/134 (3%)
Query: 331 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 390
+ L + S L I+LS IS+ + GL SL SL L +IT+
Sbjct: 37 IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELP 96
Query: 391 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 450
+ L L L L +I ++ NL L + L L ++
Sbjct: 97 KSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQT 156
Query: 451 LNLSQN-----CNL 459
++L+QN C+L
Sbjct: 157 MHLAQNPFICDCHL 170
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 4e-04
Identities = 28/155 (18%), Positives = 55/155 (35%), Gaps = 25/155 (16%)
Query: 350 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 409
+ I L I + L+ ++L QI++ A L L L L+G
Sbjct: 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG-- 89
Query: 410 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 469
N + L + + L SL LL L+ N + ++
Sbjct: 90 ----------N--KITEL--------PKSL--FEGLFSLQLLLLNAN-KINCLRVDAFQD 126
Query: 470 LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 504
L L L++ ++++ + PL+ ++++ L
Sbjct: 127 LHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQ 161
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Length = 197 | Back alignment and structure |
|---|
Score = 41.0 bits (96), Expect = 4e-04
Identities = 29/165 (17%), Positives = 56/165 (33%), Gaps = 34/165 (20%)
Query: 292 DECLVHLK-GLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 349
+ C+ L+ T+L+ +N+++ + E + +L
Sbjct: 30 ESCINRLREDDTDLKEVNINNMKRVSKERIRSLI--------------------EAACNS 69
Query: 350 TNLESINLSFTGISDGSLRKLAGL----SSLKSLNLDARQITDTGLA----ALTSLTGLT 401
++E +L+ T ISD R L L SL+ LN+++ +T LA + +
Sbjct: 70 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIV 129
Query: 402 HLDLFGARITDSGAAYLRNF----KNLRSLEICGGGLTDAGVKHI 442
R + G + + SL G +H
Sbjct: 130 EFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASMEARHR 174
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Length = 197 | Back alignment and structure |
|---|
Score = 39.8 bits (93), Expect = 8e-04
Identities = 17/130 (13%), Positives = 49/130 (37%), Gaps = 17/130 (13%)
Query: 227 TSLQKLTLLNLEGCPVTAAC--LDSLSALGSLFYLNLNRCQLSDDGCEKFSKI----GSL 280
T L+++ + N++ +++ + +L +SD ++ SL
Sbjct: 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSL 100
Query: 281 KVLNLGFNEITD-------ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL----CNLK 329
+VLN+ N +T + + + ++ N +G++ +++ +L
Sbjct: 101 RVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLL 160
Query: 330 CLELSDTQVG 339
+ +S +
Sbjct: 161 RVGISFASME 170
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 529 | |||
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 100.0 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 100.0 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 100.0 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 100.0 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 100.0 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 100.0 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 100.0 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 100.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 100.0 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 100.0 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 100.0 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 100.0 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.97 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.97 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.97 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.97 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.97 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.97 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.97 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.96 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.96 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.96 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.96 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.96 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.96 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.95 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.95 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.94 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.94 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.94 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.93 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.93 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.93 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.92 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.91 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.91 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.9 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.9 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.9 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.9 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.9 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.9 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.9 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.9 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.9 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.89 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.88 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.88 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.88 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.88 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.88 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.87 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.87 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.87 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.87 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.86 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.85 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.85 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.85 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.85 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.84 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.84 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.81 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.81 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.81 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.81 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.81 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.79 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.79 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.79 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.79 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.77 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.76 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.75 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.71 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.68 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.68 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.67 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.66 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.66 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.65 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.64 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.63 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.63 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.63 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.63 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.62 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.62 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.61 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.6 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.6 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.6 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.59 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.59 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.59 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.58 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.58 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.57 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.56 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.56 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.55 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.55 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.55 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.54 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.47 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.47 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.46 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.46 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.46 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.44 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 99.41 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.4 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.38 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.37 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.36 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 99.36 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.36 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.34 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.33 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.32 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.3 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.24 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.22 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 99.2 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.2 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 99.19 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 99.17 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.16 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.1 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 99.05 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.04 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 99.02 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.01 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 99.0 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.98 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.89 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 98.84 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 98.69 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 98.14 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.06 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 97.99 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 97.97 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 95.03 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 93.44 | |
| 2lz0_A | 100 | Uncharacterized protein; hypothetical leucine rich | 86.31 |
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-46 Score=393.55 Aligned_cols=465 Identities=21% Similarity=0.187 Sum_probs=276.9
Q ss_pred ccceeccCCCCC--CCHHHHHHHHhcCCceeEEEecCcccCchhhhhccCCCCCCeEeccCCcccCchhhhhccCCCCCC
Q 009672 32 ALQDLCLGQYPG--VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLT 109 (529)
Q Consensus 32 ~l~~l~l~~~~~--~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 109 (529)
.++++.+..+.- ....+ ......+++|++|++++|.+++..+ ++.+++|++|++++| .+....+. ++.+++|+
T Consensus 152 ~L~~L~Ls~n~l~~~~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n-~l~~~~~~-l~~l~~L~ 226 (768)
T 3rgz_A 152 SLEVLDLSANSISGANVVG-WVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSN-NFSTGIPF-LGDCSALQ 226 (768)
T ss_dssp TCSEEECCSSCCEEETHHH-HHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSS-CCCSCCCB-CTTCCSCC
T ss_pred CCCEEECCCCccCCcCChh-hhhhccCCCCCEEECCCCcccccCC--cccCCcCCEEECcCC-cCCCCCcc-cccCCCCC
Confidence 388888876641 11111 1224457788888888888765433 377888888888887 45544333 77888888
Q ss_pred EEEcCCCCccchhHHHHHhCCCCCCEEeccCccccccccccccCCCcCcEEeccCCcccCccccccccC-CCCCCeEEcc
Q 009672 110 SLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG-LTNLKSLQIS 188 (529)
Q Consensus 110 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~-~~~L~~L~l~ 188 (529)
+|++++|. +++..|..+.++++|++|++++|......+. . .+++|++|++++| .+.+..+..+.. +++|++|+++
T Consensus 227 ~L~Ls~n~-l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~-~-~l~~L~~L~L~~n-~l~~~ip~~~~~~~~~L~~L~Ls 302 (768)
T 3rgz_A 227 HLDISGNK-LSGDFSRAISTCTELKLLNISSNQFVGPIPP-L-PLKSLQYLSLAEN-KFTGEIPDFLSGACDTLTGLDLS 302 (768)
T ss_dssp EEECCSSC-CCSCHHHHTTTCSSCCEEECCSSCCEESCCC-C-CCTTCCEEECCSS-EEEESCCCCSCTTCTTCSEEECC
T ss_pred EEECcCCc-CCCcccHHHhcCCCCCEEECCCCcccCccCc-c-ccCCCCEEECcCC-ccCCccCHHHHhhcCcCCEEECc
Confidence 88888887 5667788888888888888888753322222 1 5566666666653 333334444443 3566666666
Q ss_pred CCCCChhHHHHhhccC-ccchhhhhhhhHHHhhhhhh-hhcccCCccEEEccCCC-------------------------
Q 009672 189 CSKVTDSGIAYLKGLS-ISSVIFILCSMIIRLFCLHV-FLTSLQKLTLLNLEGCP------------------------- 241 (529)
Q Consensus 189 ~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~------------------------- 241 (529)
+|.+++..+..+..+. +..+.+...... ..++. .+..+++|++|++++|.
T Consensus 303 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~---~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~ 379 (768)
T 3rgz_A 303 GNHFYGAVPPFFGSCSLLESLALSSNNFS---GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNN 379 (768)
T ss_dssp SSEEEECCCGGGGGCTTCCEEECCSSEEE---EECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSE
T ss_pred CCcCCCccchHHhcCCCccEEECCCCccc---CcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCC
Confidence 5555433333332221 000000000000 00111 13333444444444443
Q ss_pred CCHHHHHHhhc--CCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEECCCCCCChhhh
Q 009672 242 VTAACLDSLSA--LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 319 (529)
Q Consensus 242 ~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 319 (529)
+.+..+..+.. +++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++.+|.+....+
T Consensus 380 l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p 459 (768)
T 3rgz_A 380 FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP 459 (768)
T ss_dssp EEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred cCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCC
Confidence 33322222322 4456666666665555555556666666666666666655555566666667777766666665555
Q ss_pred hhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCC
Q 009672 320 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 399 (529)
Q Consensus 320 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 399 (529)
..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+....+..++.+++|+.|++++|.+.+..+..++.+++
T Consensus 460 ~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 539 (768)
T 3rgz_A 460 QELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRS 539 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTT
T ss_pred HHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCC
Confidence 56666667777777776666555566666677777777777666556666666677777777777666555556666677
Q ss_pred CCEEecCCCCCChHHHHh--------------------------------------------------------------
Q 009672 400 LTHLDLFGARITDSGAAY-------------------------------------------------------------- 417 (529)
Q Consensus 400 L~~L~l~~~~l~~~~~~~-------------------------------------------------------------- 417 (529)
|+.|++++|.+.+..|..
T Consensus 540 L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~ 619 (768)
T 3rgz_A 540 LIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRV 619 (768)
T ss_dssp CCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCE
T ss_pred CCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccce
Confidence 777777766554222211
Q ss_pred --------hhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccChhHHH
Q 009672 418 --------LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 489 (529)
Q Consensus 418 --------~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 489 (529)
+..+++|+.|++++|.+++..+..++.++.|+.|++++| .++..+|..++.+++|+.|++++|.+++..|.
T Consensus 620 ~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N-~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~ 698 (768)
T 3rgz_A 620 YGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN-DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ 698 (768)
T ss_dssp EEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSS-CCCSCCCGGGGGCTTCCEEECCSSCCEECCCG
T ss_pred ecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCC-ccCCCCChHHhCCCCCCEEECCCCcccCcCCh
Confidence 122455666777777776666666777777777777777 66666666677777777777777777766666
Q ss_pred hccCCCCCcEEeecCccCCh
Q 009672 490 HLKPLKNLRSLTLESCKVTA 509 (529)
Q Consensus 490 ~~~~~~~L~~L~l~~~~~~~ 509 (529)
.+..+++|++|++++|+++.
T Consensus 699 ~l~~l~~L~~L~ls~N~l~g 718 (768)
T 3rgz_A 699 AMSALTMLTEIDLSNNNLSG 718 (768)
T ss_dssp GGGGCCCCSEEECCSSEEEE
T ss_pred HHhCCCCCCEEECcCCcccc
Confidence 66777777777777776553
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-45 Score=376.87 Aligned_cols=448 Identities=20% Similarity=0.221 Sum_probs=244.1
Q ss_pred CCceeEEEecCcccCchhhhhccCCCCCCeEeccCCcccCchhhhhccCCCCCCEEEcCCCCccchhHHHHHhCCCCCCE
Q 009672 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135 (529)
Q Consensus 56 ~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 135 (529)
++++++|++++|.+++..+..|+++++|++|++++| .+....+..|+.+++|++|++++|. ++...|..|.++++|++
T Consensus 32 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~ 109 (606)
T 3t6q_A 32 PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRC-QIYWIHEDTFQSQHRLDTLVLTANP-LIFMAETALSGPKALKH 109 (606)
T ss_dssp CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CSEECTTTTSSCTTCCE
T ss_pred CCcCcEEEccCCccCcCChhHhccCccceEEECCCC-ccceeChhhccCccccCeeeCCCCc-ccccChhhhcccccccE
Confidence 356888888888888777777888888888888887 5777777778888888888888887 55666777888888888
Q ss_pred EeccCccccccccccccCCCcCcEEeccCCcccCccccccccCCCCCCeEEccCCCCChhHHHHhhccCcc---chhhhh
Q 009672 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSIS---SVIFIL 212 (529)
Q Consensus 136 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~---~~~~~~ 212 (529)
|++++|......+..++.+++|++|++++ +.+.......+..+++|++|++++|.++...+..+..+.-. ...+..
T Consensus 110 L~L~~n~i~~l~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~ 188 (606)
T 3t6q_A 110 LFFIQTGISSIDFIPLHNQKTLESLYLGS-NHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNG 188 (606)
T ss_dssp EECTTSCCSCGGGSCCTTCTTCCEEECCS-SCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTT
T ss_pred eeccccCcccCCcchhccCCcccEEECCC-CcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCC
Confidence 88888765544456677888888888887 34554343445557888888888887776555444433211 111000
Q ss_pred hhh-----------------------HHH-hhh----------------------hhhhhccc--CCccEEEccCCCCCH
Q 009672 213 CSM-----------------------IIR-LFC----------------------LHVFLTSL--QKLTLLNLEGCPVTA 244 (529)
Q Consensus 213 ~~~-----------------------~~~-~~~----------------------~~~~~~~~--~~L~~L~l~~~~~~~ 244 (529)
... ... ... ....+..+ .+|+.|+++++.+..
T Consensus 189 n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~ 268 (606)
T 3t6q_A 189 NDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFN 268 (606)
T ss_dssp CCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSS
T ss_pred CccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCc
Confidence 000 000 000 00001111 145555555555554
Q ss_pred HHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEECCCCCCC-hhhhhhhc
Q 009672 245 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG-DEGLVNLT 323 (529)
Q Consensus 245 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~ 323 (529)
..+..|..+++|+.|++++|.+.. .|..+..+++|++|++++|.+.+..+..+..+++|++|++.+|.+. ......+.
T Consensus 269 ~~~~~~~~l~~L~~L~l~~n~l~~-lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 347 (606)
T 3t6q_A 269 ISSNTFHCFSGLQELDLTATHLSE-LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLE 347 (606)
T ss_dssp CCTTTTTTCTTCSEEECTTSCCSC-CCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTT
T ss_pred cCHHHhccccCCCEEeccCCccCC-CChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhh
Confidence 444445555556666665555543 2334445555555555555555444444555555555555555433 12222344
Q ss_pred CCCCCCeEEcCCCccChhh--hhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHH-HHHhcCCCC
Q 009672 324 GLCNLKCLELSDTQVGSSG--LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL-AALTSLTGL 400 (529)
Q Consensus 324 ~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L 400 (529)
.+++|+.|++++|.+.... +..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+ ..+..+++|
T Consensus 348 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 427 (606)
T 3t6q_A 348 NLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLL 427 (606)
T ss_dssp TCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTC
T ss_pred ccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccC
Confidence 5555555555555544433 3334445555555555555544444444455555555555554443221 123444555
Q ss_pred CEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhh---hhccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeee
Q 009672 401 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV---KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 477 (529)
Q Consensus 401 ~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~---~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~ 477 (529)
+.|++++|.+....+..+..+++|++|++++|.+.+... ..+..+++|++|++++| .++...+..+..+++|+.|+
T Consensus 428 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~ 506 (606)
T 3t6q_A 428 KVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC-DLSSIDQHAFTSLKMMNHVD 506 (606)
T ss_dssp CEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEE
T ss_pred CEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCC-ccCccChhhhccccCCCEEE
Confidence 555555555544444444445555555555554443211 23444455555555555 44444444444455555555
Q ss_pred ccCCccChhHHHhccCCCCCcEEeecCccCCh
Q 009672 478 VSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 509 (529)
Q Consensus 478 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 509 (529)
+++|++.+..+..+..+++| .|++++|+++.
T Consensus 507 Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~ 537 (606)
T 3t6q_A 507 LSHNRLTSSSIEALSHLKGI-YLNLASNHISI 537 (606)
T ss_dssp CCSSCCCGGGGGGGTTCCSC-EEECCSSCCCC
T ss_pred CCCCccCcCChhHhCccccc-EEECcCCcccc
Confidence 55555554444444445555 55555554443
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-45 Score=385.70 Aligned_cols=496 Identities=19% Similarity=0.165 Sum_probs=353.0
Q ss_pred ccCChhhhh--hhccCc-cceeccCCCCCCCHHHHHHHHhcCCceeEEEecCcccCchhhhh---ccCCCCCCeEeccCC
Q 009672 18 RCLTEVSLE--AFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIH---LKDCSNLQSLDFNFC 91 (529)
Q Consensus 18 ~~~~~~~~~--~~~~~~-l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~---l~~~~~L~~L~l~~~ 91 (529)
+.++...+. .+..+. ++++.+..+.-.. ..........++|++|++++|.+++..+.. ++.+++|++|++++|
T Consensus 110 n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n 188 (768)
T 3rgz_A 110 NSLSGPVTTLTSLGSCSGLKFLNVSSNTLDF-PGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGN 188 (768)
T ss_dssp SEEEEEGGGGGGGGGCTTCCEEECCSSEEEC-CSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSS
T ss_pred CcCCCcCCChHHHhCCCCCCEEECcCCccCC-cCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCC
Confidence 344433333 666665 9999997663100 000011135788999999999999877766 789999999999998
Q ss_pred cccCchhhhhccCCCCCCEEEcCCCCccchhHHHHHhCCCCCCEEeccCccccccccccccCCCcCcEEeccCCcccCcc
Q 009672 92 IQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS 171 (529)
Q Consensus 92 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 171 (529)
. +... ..+..+++|++|++++|. ++...|. +.++++|++|++++|......+..+..+++|++|++++|. +.+.
T Consensus 189 ~-l~~~--~~~~~l~~L~~L~Ls~n~-l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~-l~~~ 262 (768)
T 3rgz_A 189 K-ISGD--VDVSRCVNLEFLDVSSNN-FSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQ-FVGP 262 (768)
T ss_dssp E-EESC--CBCTTCTTCCEEECCSSC-CCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSC-CEES
T ss_pred c-cccc--CCcccCCcCCEEECcCCc-CCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCc-ccCc
Confidence 4 5432 334789999999999998 4555555 8899999999999987655667889999999999999964 4433
Q ss_pred ccccccCCCCCCeEEccCCCCChhHHHHhhcc--CccchhhhhhhhHHHhhhhhhhhcccCCccEEEccCCCCCHHHH-H
Q 009672 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL--SISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACL-D 248 (529)
Q Consensus 172 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~ 248 (529)
.+.. .+++|++|++++|.+++..+..+... .+..+.+..... ....+..+..+++|++|++++|.+.+..+ .
T Consensus 263 ~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l---~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~ 337 (768)
T 3rgz_A 263 IPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF---YGAVPPFFGSCSLLESLALSSNNFSGELPMD 337 (768)
T ss_dssp CCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEE---EECCCGGGGGCTTCCEEECCSSEEEEECCHH
T ss_pred cCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcC---CCccchHHhcCCCccEEECCCCcccCcCCHH
Confidence 3332 78999999999998775433332111 111111111110 11345667888999999999998874333 4
Q ss_pred HhhcCCCCCeEecCCCcCChhhhHhhhcCC-C--------------------------ccEEEccCCCCChHHHHhhcCC
Q 009672 249 SLSALGSLFYLNLNRCQLSDDGCEKFSKIG-S--------------------------LKVLNLGFNEITDECLVHLKGL 301 (529)
Q Consensus 249 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~--------------------------L~~L~l~~~~~~~~~~~~~~~~ 301 (529)
.+..+++|++|++++|.+....+..+..++ + |++|++++|.+.+..+..+..+
T Consensus 338 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l 417 (768)
T 3rgz_A 338 TLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC 417 (768)
T ss_dssp HHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGC
T ss_pred HHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcC
Confidence 488889999999998887654454444433 4 4444444444444445556666
Q ss_pred CCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEEC
Q 009672 302 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 381 (529)
Q Consensus 302 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 381 (529)
++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++
T Consensus 418 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 497 (768)
T 3rgz_A 418 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISL 497 (768)
T ss_dssp TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred CCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEc
Confidence 77777777777665555566666777777777777776666666677777777777777777666667777788888888
Q ss_pred CCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhh--------------------
Q 009672 382 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH-------------------- 441 (529)
Q Consensus 382 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~-------------------- 441 (529)
++|.+.+..+..++.+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..
T Consensus 498 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~ 577 (768)
T 3rgz_A 498 SNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVY 577 (768)
T ss_dssp CSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEE
T ss_pred cCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccc
Confidence 888777665667777788888888888877766777778888888888887665332221
Q ss_pred --------------------------------------------------ccCCCCCCeEecCCCCCCChhHHHHHhCCC
Q 009672 442 --------------------------------------------------IKDLSSLTLLNLSQNCNLTDKTLELISGLT 471 (529)
Q Consensus 442 --------------------------------------------------~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~ 471 (529)
+..+++|+.|++++| .++..+|..++.++
T Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N-~l~g~ip~~l~~l~ 656 (768)
T 3rgz_A 578 IKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN-MLSGYIPKEIGSMP 656 (768)
T ss_dssp EECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSS-CCBSCCCGGGGGCT
T ss_pred cccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCC-cccccCCHHHhccc
Confidence 223467888888888 78878888889999
Q ss_pred CCCeeeccCCccChhHHHhccCCCCCcEEeecCccCChhHHHHhhcCCCCCceecCC
Q 009672 472 GLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRP 528 (529)
Q Consensus 472 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~l~~l~~ 528 (529)
.|+.|++++|.+++..|..++.+++|+.|++++|+++....+.+. .++.|+.|++
T Consensus 657 ~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~--~l~~L~~L~l 711 (768)
T 3rgz_A 657 YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS--ALTMLTEIDL 711 (768)
T ss_dssp TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGG--GCCCCSEEEC
T ss_pred cCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHh--CCCCCCEEEC
Confidence 999999999999988888899999999999999988866555565 6778887764
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-44 Score=368.14 Aligned_cols=470 Identities=20% Similarity=0.168 Sum_probs=374.8
Q ss_pred ccceeccCCCCCCCHHHHHHHHhcCCceeEEEecCcccCchhhhhccCCCCCCeEeccCCcccCchhhhhccCCCCCCEE
Q 009672 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSL 111 (529)
Q Consensus 32 ~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 111 (529)
.++.+.+.... +.... ......+++|++|++++|.+++..+.+|+.+++|++|++++| .+....+..|+.+++|++|
T Consensus 34 ~l~~L~Ls~n~-i~~~~-~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L 110 (606)
T 3t6q_A 34 STECLEFSFNV-LPTIQ-NTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN-PLIFMAETALSGPKALKHL 110 (606)
T ss_dssp TCCEEECTTCC-CSEEC-TTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCSEECTTTTSSCTTCCEE
T ss_pred cCcEEEccCCc-cCcCC-hhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCC-cccccChhhhcccccccEe
Confidence 46666666543 11110 112245788999999999998888888999999999999988 6777778889999999999
Q ss_pred EcCCCCccchhHHHHHhCCCCCCEEeccCccccccccccccCCCcCcEEeccCCcccCccccccccCCCCCC--eEEccC
Q 009672 112 SFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK--SLQISC 189 (529)
Q Consensus 112 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~--~L~l~~ 189 (529)
++++|. ++...+..+.++++|++|++++|.........+..+++|++|++++ +.+....+..++.+++|+ .|++++
T Consensus 111 ~L~~n~-i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~l~L~l~~ 188 (606)
T 3t6q_A 111 FFIQTG-ISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQN-NAIHYLSKEDMSSLQQATNLSLNLNG 188 (606)
T ss_dssp ECTTSC-CSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCS-SCCCEECHHHHHTTTTCCSEEEECTT
T ss_pred eccccC-cccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEccc-CcccccChhhhhhhcccceeEEecCC
Confidence 999998 5665567788999999999999865544445555589999999998 556666667788888888 788888
Q ss_pred CCCChhHHHHhhccCcc-----------------------ch----------------hhhhhh--h------H-HHh-h
Q 009672 190 SKVTDSGIAYLKGLSIS-----------------------SV----------------IFILCS--M------I-IRL-F 220 (529)
Q Consensus 190 ~~~~~~~~~~l~~~~~~-----------------------~~----------------~~~~~~--~------~-~~~-~ 220 (529)
|.++...+..+....+. .. .+.... . . ... .
T Consensus 189 n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~ 268 (606)
T 3t6q_A 189 NDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFN 268 (606)
T ss_dssp CCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSS
T ss_pred CccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCc
Confidence 87776543332211000 00 000000 0 0 000 1
Q ss_pred hhhhhhcccCCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHH-Hhhc
Q 009672 221 CLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL-VHLK 299 (529)
Q Consensus 221 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~ 299 (529)
..+..+..+++|++|+++++.+.. .+..+..+++|++|++++|.+....+..+..+++|++|++++|.+....+ ..+.
T Consensus 269 ~~~~~~~~l~~L~~L~l~~n~l~~-lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 347 (606)
T 3t6q_A 269 ISSNTFHCFSGLQELDLTATHLSE-LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLE 347 (606)
T ss_dssp CCTTTTTTCTTCSEEECTTSCCSC-CCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTT
T ss_pred cCHHHhccccCCCEEeccCCccCC-CChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhh
Confidence 122347888999999999999885 45678889999999999999998878888999999999999998764443 3478
Q ss_pred CCCCCCEEECCCCCCChhh--hhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhh-hhhcCCCCC
Q 009672 300 GLTNLESLNLDSCGIGDEG--LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL-RKLAGLSSL 376 (529)
Q Consensus 300 ~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L 376 (529)
.+++|++|++++|.+.... +..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+ ..+..+++|
T Consensus 348 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 427 (606)
T 3t6q_A 348 NLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLL 427 (606)
T ss_dssp TCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTC
T ss_pred ccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccC
Confidence 8999999999999887655 5678899999999999999888777888999999999999998876544 347889999
Q ss_pred cEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHH---HHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEec
Q 009672 377 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG---AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 453 (529)
Q Consensus 377 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~---~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l 453 (529)
+.|++++|.+....+..++.+++|+.|++++|.+++.. +..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 428 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 507 (606)
T 3t6q_A 428 KVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDL 507 (606)
T ss_dssp CEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEEC
Confidence 99999999998877777889999999999999987632 246788999999999999999988889999999999999
Q ss_pred CCCCCCChhHHHHHhCCCCCCeeeccCCccChhHHHhccCCCCCcEEeecCccCCh
Q 009672 454 SQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 509 (529)
Q Consensus 454 ~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 509 (529)
++| .++...+..+..++.| .|++++|.+++..+..+..+++|+.|++++|++++
T Consensus 508 s~N-~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 561 (606)
T 3t6q_A 508 SHN-RLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561 (606)
T ss_dssp CSS-CCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEEC
T ss_pred CCC-ccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccc
Confidence 999 8999999999999999 99999999998888888889999999999998875
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-43 Score=365.48 Aligned_cols=468 Identities=21% Similarity=0.220 Sum_probs=252.3
Q ss_pred cCCceeEEEecCcccCchhhhhccCCCCCCeEeccCCcccCchhhhhccCCCCCCEEEcCCCCccchhHHHHHhCCCCCC
Q 009672 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134 (529)
Q Consensus 55 ~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 134 (529)
.+++|++|+++++.+++..+..++++++|++|++++| .+.......|+.+++|++|++++|. ++...+..|.++++|+
T Consensus 47 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~ 124 (680)
T 1ziw_A 47 RYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLI 124 (680)
T ss_dssp GGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSC-CCCCCSCTTTTCTTCC
T ss_pred CCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-ccCccChhhhccCCCCCEEECCCCc-cCccChhHccccCCCC
Confidence 4566777777777776666666777777777777766 4555555566777777777777766 4444455666777777
Q ss_pred EEeccCccccccccccccCCCcCcEEeccCCcccCcccccccc--CCCCCCeEEccCCCCChhHHHHhhccC------cc
Q 009672 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS--GLTNLKSLQISCSKVTDSGIAYLKGLS------IS 206 (529)
Q Consensus 135 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~--~~~~L~~L~l~~~~~~~~~~~~l~~~~------~~ 206 (529)
+|++++|......+..+..+++|++|++++| .+....+..+. .+++|++|++++|.++...+..+..+. +.
T Consensus 125 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 203 (680)
T 1ziw_A 125 TLDLSHNGLSSTKLGTQVQLENLQELLLSNN-KIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLN 203 (680)
T ss_dssp EEECCSSCCSCCCCCSSSCCTTCCEEECCSS-CCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECT
T ss_pred EEECCCCcccccCchhhcccccCCEEEccCC-cccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhcc
Confidence 7777776544444455666777777777663 34433333332 446667777766665544333332221 00
Q ss_pred chhhhhhhhHH-------------------HhhhhhhhhcccC--CccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCc
Q 009672 207 SVIFILCSMII-------------------RLFCLHVFLTSLQ--KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 265 (529)
Q Consensus 207 ~~~~~~~~~~~-------------------~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 265 (529)
...+....... -....+..+..++ +|+.|++++|.+....+..+..+++|+.|++++|.
T Consensus 204 ~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 283 (680)
T 1ziw_A 204 NVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN 283 (680)
T ss_dssp TCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCC
T ss_pred ccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCc
Confidence 00000000000 0000112233332 26666666655555444455555566666665555
Q ss_pred CChhhhHhhh---------------------------------cCCCccEEEccCCCCChHHHHhhcCCCCCCEEECCCC
Q 009672 266 LSDDGCEKFS---------------------------------KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 312 (529)
Q Consensus 266 ~~~~~~~~l~---------------------------------~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 312 (529)
+....+..+. .+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 284 l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 363 (680)
T 1ziw_A 284 IQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNS 363 (680)
T ss_dssp BSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTC
T ss_pred cCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCC
Confidence 5443333333 3444555555555444433333444445555544443
Q ss_pred C----------------------------CChhhhhhhcCCCCCCeEEcCCCccChhh-hhhccCCCCCCeEeccCCCCC
Q 009672 313 G----------------------------IGDEGLVNLTGLCNLKCLELSDTQVGSSG-LRHLSGLTNLESINLSFTGIS 363 (529)
Q Consensus 313 ~----------------------------~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~ 363 (529)
. +....+..+..+++|+.|++++|.+.... ...+..+++|+++++++|.+.
T Consensus 364 ~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~ 443 (680)
T 1ziw_A 364 FTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYL 443 (680)
T ss_dssp BSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEE
T ss_pred chhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcc
Confidence 2 22222223333444444444444433211 123334444444444444443
Q ss_pred hhhhhhhcCCCCCcEEECCCCCCCH--HHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhh-
Q 009672 364 DGSLRKLAGLSSLKSLNLDARQITD--TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK- 440 (529)
Q Consensus 364 ~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~- 440 (529)
......+..+++|+.|++++|.+.. ..+..+..+++|+.|++++|.++...+..+.++++|++|++++|.++.....
T Consensus 444 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 523 (680)
T 1ziw_A 444 QLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHA 523 (680)
T ss_dssp ECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTT
T ss_pred eeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhh
Confidence 3333344444455555555544431 1233455667777777777777766666667777777777777776654221
Q ss_pred -------hccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccChhHHHhccCCCCCcEEeecCccCChhHHH
Q 009672 441 -------HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 513 (529)
Q Consensus 441 -------~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 513 (529)
.+.++++|++|++++| .++...+..|.++++|+.|++++|.++...+..|..+++|+.|++++|+++.....
T Consensus 524 ~~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~ 602 (680)
T 1ziw_A 524 NPGGPIYFLKGLSHLHILNLESN-GFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKK 602 (680)
T ss_dssp STTSCCCTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHH
T ss_pred ccCCcchhhcCCCCCCEEECCCC-CCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChh
Confidence 2456677777777777 66655555677777777777777777766666667777777888877777765544
Q ss_pred HhhcCCCCCceecC
Q 009672 514 RLQSRDLPNLVSFR 527 (529)
Q Consensus 514 ~l~~~~~~~l~~l~ 527 (529)
.+. ..+++|+.++
T Consensus 603 ~~~-~~~~~L~~l~ 615 (680)
T 1ziw_A 603 VFG-PAFRNLTELD 615 (680)
T ss_dssp HHH-HHHTTCSEEE
T ss_pred Hhc-ccccccCEEE
Confidence 332 2344555543
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-42 Score=363.30 Aligned_cols=466 Identities=20% Similarity=0.217 Sum_probs=309.4
Q ss_pred CCceeEEEecCcccCchhhhhccCCCCCCeEeccCCcccCchhhhhccCCCCCCEEEcCCCCccchhHHHHHhCCCCCCE
Q 009672 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135 (529)
Q Consensus 56 ~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 135 (529)
++++++|+++++.+++..+..|+++++|++|++++| .+....+..|+++++|++|++++|. ++...+..|.++++|++
T Consensus 24 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~ 101 (680)
T 1ziw_A 24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN-TISKLEPELCQKLPMLKVLNLQHNE-LSQLSDKTFAFCTNLTE 101 (680)
T ss_dssp CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSS-CCCCCCTTHHHHCTTCCEEECCSSC-CCCCCTTTTTTCTTCSE
T ss_pred CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCC-ccCccCHHHHhcccCcCEEECCCCc-cCccChhhhccCCCCCE
Confidence 367999999999999888888999999999999998 6888888889999999999999998 55555557999999999
Q ss_pred EeccCccccccccccccCCCcCcEEeccCCcccCccccccccCCCCCCeEEccCCCCChhHHHHhhccC---ccchhhhh
Q 009672 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLS---ISSVIFIL 212 (529)
Q Consensus 136 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~---~~~~~~~~ 212 (529)
|++++|......+..++.+++|++|++++| .+....+..+.++++|++|++++|.++......+.... +..+.+..
T Consensus 102 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~ 180 (680)
T 1ziw_A 102 LHLMSNSIQKIKNNPFVKQKNLITLDLSHN-GLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180 (680)
T ss_dssp EECCSSCCCCCCSCTTTTCTTCCEEECCSS-CCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTT
T ss_pred EECCCCccCccChhHccccCCCCEEECCCC-cccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCC
Confidence 999998655445577899999999999994 56666677888999999999999998876655443221 11111111
Q ss_pred hhhHH-------------------------HhhhhhhhhcccCCccEEEccCCCCCHHHHHHhhcCC--CCCeEecCCCc
Q 009672 213 CSMII-------------------------RLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALG--SLFYLNLNRCQ 265 (529)
Q Consensus 213 ~~~~~-------------------------~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~--~L~~L~l~~~~ 265 (529)
..... ....+...+ ..++|+.|+++++.+.+..+..+..++ +|+.|++++|.
T Consensus 181 n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l-~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~ 259 (680)
T 1ziw_A 181 NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLEL-ANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN 259 (680)
T ss_dssp CCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHH-TTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSC
T ss_pred CcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHh-hhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCC
Confidence 10000 000011111 236778888888877766666666654 49999999999
Q ss_pred CChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEECCCCCCC---------hhhhhhhcCCCCCCeEEcCCC
Q 009672 266 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG---------DEGLVNLTGLCNLKCLELSDT 336 (529)
Q Consensus 266 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~---------~~~~~~~~~~~~L~~L~l~~~ 336 (529)
+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++.++... ......+..+++|+.|++++|
T Consensus 260 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n 339 (680)
T 1ziw_A 260 LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN 339 (680)
T ss_dssp CCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSC
T ss_pred cCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCC
Confidence 88877778888999999999999887665555666666666666544221 111113344455555555555
Q ss_pred ccChhhhhhccCCCCCCe----------------------------EeccCCCCChhhhhhhcCCCCCcEEECCCCCCCH
Q 009672 337 QVGSSGLRHLSGLTNLES----------------------------INLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388 (529)
Q Consensus 337 ~~~~~~~~~~~~~~~L~~----------------------------L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 388 (529)
.+....+..+..+++|+. +++++|.+....+..+..+++|+.|++++|.+.+
T Consensus 340 ~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 419 (680)
T 1ziw_A 340 DIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQ 419 (680)
T ss_dssp CBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEE
T ss_pred ccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCcc
Confidence 544433333333333333 3333444444444455566667777776666643
Q ss_pred H-HHHHHhcCCCCCEEecCCCCCChH--------------------------HHHhhhcCCCCcEEEccCCCCChhhhhh
Q 009672 389 T-GLAALTSLTGLTHLDLFGARITDS--------------------------GAAYLRNFKNLRSLEICGGGLTDAGVKH 441 (529)
Q Consensus 389 ~-~~~~l~~~~~L~~L~l~~~~l~~~--------------------------~~~~~~~~~~L~~L~l~~~~l~~~~~~~ 441 (529)
. ....+..+++|+.|++++|.+... .+..+.++++|+.|++++|.++...+..
T Consensus 420 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~ 499 (680)
T 1ziw_A 420 ELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM 499 (680)
T ss_dssp ECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred ccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhh
Confidence 2 123445555566666655554433 2344556667777777777776665566
Q ss_pred ccCCCCCCeEecCCCCCCChhHHH--------HHhCCCCCCeeeccCCccChhHHHhccCCCCCcEEeecCccCChhHHH
Q 009672 442 IKDLSSLTLLNLSQNCNLTDKTLE--------LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 513 (529)
Q Consensus 442 ~~~~~~L~~L~l~~~~~l~~~~~~--------~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 513 (529)
+.++++|++|++++| .++..... .+..+++|+.|++++|.+.......|..+++|+.|++++|+++.....
T Consensus 500 ~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~ 578 (680)
T 1ziw_A 500 LEGLEKLEILDLQHN-NLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPAS 578 (680)
T ss_dssp TTTCTTCCEEECCSS-CCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred hccccccCEEeCCCC-CccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHh
Confidence 667777777777777 55543221 255677777777777777765555677777888888888877754444
Q ss_pred HhhcCCCCCceecCC
Q 009672 514 RLQSRDLPNLVSFRP 528 (529)
Q Consensus 514 ~l~~~~~~~l~~l~~ 528 (529)
.+. .+++|+.|++
T Consensus 579 ~~~--~l~~L~~L~L 591 (680)
T 1ziw_A 579 VFN--NQVSLKSLNL 591 (680)
T ss_dssp TTT--TCTTCCEEEC
T ss_pred HhC--CCCCCCEEEC
Confidence 333 5667776654
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-42 Score=356.42 Aligned_cols=437 Identities=22% Similarity=0.207 Sum_probs=269.9
Q ss_pred CCceeEEEecCcccCchhhhhccCCCCCCeEeccCCcccCchhhhhccCCCCCCEEEcCCCCccchhHHHHHhCCCCCCE
Q 009672 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135 (529)
Q Consensus 56 ~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 135 (529)
++++++|+++++.+++..+..|+++++|++|++++| .+....+..|.++++|++|++++|. ++...|..|.++++|++
T Consensus 31 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~i~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~ 108 (606)
T 3vq2_A 31 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRC-EIETIEDKAWHGLHHLSNLILTGNP-IQSFSPGSFSGLTSLEN 108 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CCCCCTTSSTTCTTCCE
T ss_pred CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCC-cccccCHHHhhchhhcCEeECCCCc-ccccChhhcCCcccCCE
Confidence 377999999999999888888999999999999988 6888778889999999999999998 66777888999999999
Q ss_pred EeccCccccccccccccCCCcCcEEeccCCcccCc-cccccccCCCCCCeEEccCCCCChhHHHHhhcc---C--ccchh
Q 009672 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD-SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL---S--ISSVI 209 (529)
Q Consensus 136 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~---~--~~~~~ 209 (529)
|++++|......+..++.+++|++|++++|. +.+ ..+..++++++|++|++++|.++...+..+..+ . .....
T Consensus 109 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~ 187 (606)
T 3vq2_A 109 LVAVETKLASLESFPIGQLITLKKLNVAHNF-IHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLD 187 (606)
T ss_dssp EECTTSCCCCSSSSCCTTCTTCCEEECCSSC-CCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEE
T ss_pred EEccCCccccccccccCCCCCCCEEeCCCCc-ccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceee
Confidence 9999986555555678999999999999854 443 457788999999999999998886544433222 1 00010
Q ss_pred hhhhhhHHHhhhhhhhhcccCCccEEEccCCCCCH-HHHHH---------------------------------------
Q 009672 210 FILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTA-ACLDS--------------------------------------- 249 (529)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~--------------------------------------- 249 (529)
+.... ....+.......+|+.|+++++.+.. ..+..
T Consensus 188 l~~n~----l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l 263 (606)
T 3vq2_A 188 MSLNP----IDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTI 263 (606)
T ss_dssp CTTCC----CCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEE
T ss_pred ccCCC----cceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccH
Confidence 00000 00011111122356666666555431 22222
Q ss_pred -----------------hhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEECCCC
Q 009672 250 -----------------LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 312 (529)
Q Consensus 250 -----------------~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 312 (529)
+..+++|+.++++++.+.... .+..+++|++|++++|.+. ..+ .+ .+++|+.|++.+|
T Consensus 264 ~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~--~l~~~~~L~~L~l~~n~l~-~lp-~~-~l~~L~~L~l~~n 338 (606)
T 3vq2_A 264 DEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE--DVPKHFKWQSLSIIRCQLK-QFP-TL-DLPFLKSLTLTMN 338 (606)
T ss_dssp EEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC--CCCTTCCCSEEEEESCCCS-SCC-CC-CCSSCCEEEEESC
T ss_pred hheeccccccccccccccccCCCCCEEEecCccchhhh--hccccccCCEEEcccccCc-ccc-cC-CCCccceeeccCC
Confidence 344566666666666664432 5556667777777777663 333 23 5566666666655
Q ss_pred CCChhhhhhhcCCCCCCeEEcCCCccChhh--hhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHH
Q 009672 313 GIGDEGLVNLTGLCNLKCLELSDTQVGSSG--LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 390 (529)
Q Consensus 313 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 390 (529)
..... ..+..+++|+.|++++|.+.... +..+..+++|+.|++++|.+.... ..+..+++|+.|++++|.+....
T Consensus 339 ~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~l~~L~~L~l~~n~l~~~~ 415 (606)
T 3vq2_A 339 KGSIS--FKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-ANFMGLEELQHLDFQHSTLKRVT 415 (606)
T ss_dssp SSCEE--CCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEEC-CCCTTCTTCCEEECTTSEEESTT
T ss_pred cCccc--hhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccch-hhccCCCCCCeeECCCCccCCcc
Confidence 32221 13445566666666666554432 344455566666666666554422 44455556666666665555443
Q ss_pred H-HHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChh-hhhhccCCCCCCeEecCCCCCCChhHHHHHh
Q 009672 391 L-AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA-GVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 468 (529)
Q Consensus 391 ~-~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~ 468 (529)
+ ..+..+++|+.|++++|.++...+..+.++++|++|++++|.+++. .+..+..+++|++|++++| .++...+..+.
T Consensus 416 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~ 494 (606)
T 3vq2_A 416 EFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC-QLEQISWGVFD 494 (606)
T ss_dssp TTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTT
T ss_pred ChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCC-cCCccChhhhc
Confidence 3 3444555566666666555554444555555566666655555542 3444555555555665555 55555555555
Q ss_pred CCCCCCeeeccCCccChhHHHhccCCCCCcEEeecCccCC
Q 009672 469 GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 508 (529)
Q Consensus 469 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 508 (529)
.+++|+.|++++|++.+..+..+..+++|++|++++|+++
T Consensus 495 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 534 (606)
T 3vq2_A 495 TLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 534 (606)
T ss_dssp TCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC
T ss_pred ccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc
Confidence 5555555555555555555555555555555555555555
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-42 Score=353.35 Aligned_cols=442 Identities=20% Similarity=0.181 Sum_probs=321.4
Q ss_pred cCCceeEEEecCcccCchhhhhccCCCCCCeEeccCCcccCchhhhhccCCCCCCEEEcCCCCccchhHHHHHhCCCCCC
Q 009672 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134 (529)
Q Consensus 55 ~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 134 (529)
.+++|++|++++|.+++..+.+|+.+++|++|++++| .+....+..|+.+++|++|++++|. ++...+..++++++|+
T Consensus 54 ~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~ 131 (606)
T 3vq2_A 54 NFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN-PIQSFSPGSFSGLTSLENLVAVETK-LASLESFPIGQLITLK 131 (606)
T ss_dssp TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCCCCTTSSTTCTTCCEEECTTSC-CCCSSSSCCTTCTTCC
T ss_pred CCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC-cccccChhhcCCcccCCEEEccCCc-cccccccccCCCCCCC
Confidence 4566777777777776666666677777777777766 4665556666777777777777666 3443434466677777
Q ss_pred EEeccCccccc-cccccccCCCcCcEEeccCCcccCccccccccCCC---------------------------CCCeEE
Q 009672 135 KLDLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT---------------------------NLKSLQ 186 (529)
Q Consensus 135 ~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~---------------------------~L~~L~ 186 (529)
+|++++|.... ..+..++++++|++|++++| .+.+..+..+..++ +|++|+
T Consensus 132 ~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~ 210 (606)
T 3vq2_A 132 KLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN-YIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELT 210 (606)
T ss_dssp EEECCSSCCCCCCCCGGGGTCTTCCEEECCSS-CCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEE
T ss_pred EEeCCCCcccceechHhHhhcCCCCEEEccCC-cceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeee
Confidence 77777664333 23455666677777777663 34433333333322 455555
Q ss_pred ccCCCCChh-HHHHhhccC---ccchhhhh-----------hh----------------hHHHhhhhhhhhcccCCccEE
Q 009672 187 ISCSKVTDS-GIAYLKGLS---ISSVIFIL-----------CS----------------MIIRLFCLHVFLTSLQKLTLL 235 (529)
Q Consensus 187 l~~~~~~~~-~~~~l~~~~---~~~~~~~~-----------~~----------------~~~~~~~~~~~~~~~~~L~~L 235 (529)
+++|.++.. .+..+..+. ........ .. ...........+..+++|+.|
T Consensus 211 L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L 290 (606)
T 3vq2_A 211 LRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAM 290 (606)
T ss_dssp EESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEE
T ss_pred ccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEE
Confidence 555544421 122222211 00000000 00 000000111126778999999
Q ss_pred EccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEECCCCCCC
Q 009672 236 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 315 (529)
Q Consensus 236 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 315 (529)
+++++.+.... .+..+++|+.|++++|.+.. .+ .+ .+++|++|++++|...... .+..+++|+.|++++|.+.
T Consensus 291 ~l~~~~~~~l~--~l~~~~~L~~L~l~~n~l~~-lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~ 363 (606)
T 3vq2_A 291 SLAGVSIKYLE--DVPKHFKWQSLSIIRCQLKQ-FP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALS 363 (606)
T ss_dssp EEESCCCCCCC--CCCTTCCCSEEEEESCCCSS-CC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEE
T ss_pred EecCccchhhh--hccccccCCEEEcccccCcc-cc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccC
Confidence 99999887643 77889999999999999944 44 44 8899999999999654432 5678999999999999877
Q ss_pred hhh--hhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhh-hhhcCCCCCcEEECCCCCCCHHHHH
Q 009672 316 DEG--LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNLDARQITDTGLA 392 (529)
Q Consensus 316 ~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~ 392 (529)
... +..+..+++|+.|++++|.+.... ..+..+++|+.|++++|.+....+ ..+..+++|+.|++++|.+....+.
T Consensus 364 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 442 (606)
T 3vq2_A 364 FSGCCSYSDLGTNSLRHLDLSFNGAIIMS-ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDG 442 (606)
T ss_dssp EEEECCHHHHCCSCCCEEECCSCSEEEEC-CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTT
T ss_pred CCcchhhhhccCCcccEeECCCCccccch-hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchh
Confidence 543 567888999999999999877644 667889999999999998877655 5788899999999999999887677
Q ss_pred HHhcCCCCCEEecCCCCCChH-HHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhCCC
Q 009672 393 ALTSLTGLTHLDLFGARITDS-GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 471 (529)
Q Consensus 393 ~l~~~~~L~~L~l~~~~l~~~-~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~ 471 (529)
.++.+++|+.|++++|.+++. .+..+..+++|++|++++|.+++..+..+..+++|++|++++| .++...|..+..++
T Consensus 443 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~ 521 (606)
T 3vq2_A 443 IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN-NLLFLDSSHYNQLY 521 (606)
T ss_dssp TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCEEGGGTTTCT
T ss_pred hhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCC-cCCCcCHHHccCCC
Confidence 788999999999999999873 5777889999999999999999988888999999999999999 89988889999999
Q ss_pred CCCeeeccCCccChhHHHhccCCC-CCcEEeecCccCCh
Q 009672 472 GLVSLNVSNSRITSAGLRHLKPLK-NLRSLTLESCKVTA 509 (529)
Q Consensus 472 ~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~ 509 (529)
+|+.|++++|+++.... .+..++ +|++|++++|++.+
T Consensus 522 ~L~~L~l~~N~l~~~p~-~~~~l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 522 SLSTLDCSFNRIETSKG-ILQHFPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp TCCEEECTTSCCCCEES-CGGGSCTTCCEEECCSCCCCC
T ss_pred cCCEEECCCCcCcccCH-hHhhhcccCcEEEccCCCccc
Confidence 99999999999986443 477776 69999999998875
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-42 Score=350.72 Aligned_cols=438 Identities=22% Similarity=0.235 Sum_probs=323.0
Q ss_pred CCceeEEEecCcccCchhhhhccCCCCCCeEeccCCcccCchhhhhccCCCCCCEEEcCCCCccchhHHHHHhCCCCCCE
Q 009672 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135 (529)
Q Consensus 56 ~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 135 (529)
++++++|+++++.+++..+..|+.+++|++|++++| .+....+..|+.+++|++|++++|. ++...+..|.++++|++
T Consensus 27 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~ 104 (570)
T 2z63_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQK 104 (570)
T ss_dssp CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCE
T ss_pred cccccEEEccCCccCccChhHhhCCCCceEEECCCC-cCCccCcccccCchhCCEEeCcCCc-CCccCHhhhcCcccccc
Confidence 357999999999999888888999999999999998 6888777889999999999999998 56667788999999999
Q ss_pred EeccCccccccccccccCCCcCcEEeccCCcccCc-cccccccCCCCCCeEEccCCCCChhHHHHhhcc---Ccc--chh
Q 009672 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD-SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL---SIS--SVI 209 (529)
Q Consensus 136 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~---~~~--~~~ 209 (529)
|++++|.........++.+++|++|++++|. +.. ..+..++++++|++|++++|.++......+..+ ... ...
T Consensus 105 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~ 183 (570)
T 2z63_A 105 LVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 183 (570)
T ss_dssp EECTTSCCCCSTTCSCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEE
T ss_pred ccccccccccCCCccccccccccEEecCCCc-cceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcc
Confidence 9999986444444468899999999999854 444 346788999999999999998886544433332 100 000
Q ss_pred hhhhhhHHHhhhhhhhhcccCCccEEEccCCCCC----------------------------------------------
Q 009672 210 FILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVT---------------------------------------------- 243 (529)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~---------------------------------------------- 243 (529)
+...... ...+..+.. .+|+.|+++++...
T Consensus 184 l~~n~l~---~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l 259 (570)
T 2z63_A 184 LSLNPMN---FIQPGAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI 259 (570)
T ss_dssp CTTCCCC---EECTTTTTT-CEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEE
T ss_pred cCCCCce---ecCHHHhcc-CcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccch
Confidence 0000000 000111222 25677766665211
Q ss_pred ------------HHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEECCC
Q 009672 244 ------------AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 311 (529)
Q Consensus 244 ------------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 311 (529)
+..+..+..+++|+.++++++.+.. .+..+..+ +|++|++++|.+.. .+. ..+++|+.|++.+
T Consensus 260 ~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~~~~~~-~L~~L~l~~n~~~~-l~~--~~l~~L~~L~l~~ 334 (570)
T 2z63_A 260 EEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNF-GWQHLELVNCKFGQ-FPT--LKLKSLKRLTFTS 334 (570)
T ss_dssp EEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECS-CCBCCSCC-CCSEEEEESCBCSS-CCB--CBCSSCCEEEEES
T ss_pred hhhhhhcchhhhhhchhhhcCcCcccEEEecCccchh-hhhhhccC-CccEEeeccCcccc-cCc--ccccccCEEeCcC
Confidence 1111233445666666666665553 23334444 66666666666552 221 3566777777777
Q ss_pred CCCChhhhhhhcCCCCCCeEEcCCCccChhh--hhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHH
Q 009672 312 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSG--LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 389 (529)
Q Consensus 312 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 389 (529)
+........ ..+++|+.|++++|.+.... +..+..+++|+.|++++|.+...... +..+++|+.|++++|.+...
T Consensus 335 n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~ 411 (570)
T 2z63_A 335 NKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQM 411 (570)
T ss_dssp CBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESC
T ss_pred Ccccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccc
Confidence 654432222 56789999999998877654 45667889999999999988775544 78889999999999888765
Q ss_pred HH-HHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCC-hhhhhhccCCCCCCeEecCCCCCCChhHHHHH
Q 009672 390 GL-AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT-DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 467 (529)
Q Consensus 390 ~~-~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l 467 (529)
.+ ..+..+++|+.|++++|.+....+..+.++++|++|++++|.+. ...+..+..+++|++|++++| .++...+..+
T Consensus 412 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~~~~~ 490 (570)
T 2z63_A 412 SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAF 490 (570)
T ss_dssp TTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTT
T ss_pred cchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCC-ccccCChhhh
Confidence 33 35678899999999999988877778889999999999999887 345667888999999999999 8888878888
Q ss_pred hCCCCCCeeeccCCccChhHHHhccCCCCCcEEeecCccCCh
Q 009672 468 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 509 (529)
Q Consensus 468 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 509 (529)
..+++|+.|++++|.+.+..+..+..+++|+.|++++|++++
T Consensus 491 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 532 (570)
T 2z63_A 491 NSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 532 (570)
T ss_dssp TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred hcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccC
Confidence 999999999999999998877788899999999999998875
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-39 Score=332.03 Aligned_cols=415 Identities=20% Similarity=0.193 Sum_probs=264.7
Q ss_pred CceeEEEecCcccCchhhhhccCCCCCCeEeccCCcccCchhhhhccCCCCCCEEEcCCCCccchhHHHHHhCCCCCCEE
Q 009672 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136 (529)
Q Consensus 57 ~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 136 (529)
+++++|+++++.+++..+..|+.+++|++|++++| .+....+..|..+++|++|++++|. +++..+..|+++++|++|
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L 103 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDNH-LSSLSSSWFGPLSSLKYL 103 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSC-CCSCCHHHHTTCTTCCEE
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCC-CcCccChhhccccccCCEEECCCCc-cCccCHHHhccCCCCcEE
Confidence 67999999999999888888999999999999998 6888777889999999999999998 677778889999999999
Q ss_pred eccCccccc-cccccccCCCcCcEEeccCCcccCccccccccCCCCCCeEEccCCCCChhHHHHhhccCccchhhhhhhh
Q 009672 137 DLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSM 215 (529)
Q Consensus 137 ~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 215 (529)
++++|.... ..+..++.+++|++|++++|..+....+..+..+++|++|++++|.++...+..+..+
T Consensus 104 ~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l------------ 171 (549)
T 2z81_A 104 NLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSI------------ 171 (549)
T ss_dssp ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTC------------
T ss_pred ECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhcc------------
Confidence 999986443 2346788999999999998765666555788899999999999998887555444443
Q ss_pred HHHhhhhhhhhcccCCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhh---HhhhcCCCccEEEccCCCCCh
Q 009672 216 IIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC---EKFSKIGSLKVLNLGFNEITD 292 (529)
Q Consensus 216 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~l~~~~~L~~L~l~~~~~~~ 292 (529)
++|+.|+++++.........+..+++|++|++++|.+..... .....+++|+.|+++++.+.+
T Consensus 172 --------------~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 237 (549)
T 2z81_A 172 --------------RDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTD 237 (549)
T ss_dssp --------------SEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEH
T ss_pred --------------ccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccch
Confidence 556666666555544333333445566666665555543210 111123344444444444433
Q ss_pred HHHHhh----cCC-----------------------------------------------------------CCCCEEEC
Q 009672 293 ECLVHL----KGL-----------------------------------------------------------TNLESLNL 309 (529)
Q Consensus 293 ~~~~~~----~~~-----------------------------------------------------------~~L~~L~l 309 (529)
..+..+ ..+ ++|+.|++
T Consensus 238 ~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l 317 (549)
T 2z81_A 238 ESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITV 317 (549)
T ss_dssp HHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEE
T ss_pred hHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEe
Confidence 222111 112 23444444
Q ss_pred CCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhh---hccCCCCCCeEeccCCCCChhhh--hhhcCCCCCcEEECCCC
Q 009672 310 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR---HLSGLTNLESINLSFTGISDGSL--RKLAGLSSLKSLNLDAR 384 (529)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~--~~l~~~~~L~~L~l~~~ 384 (529)
.+|.+.......+..+++|+.|++++|.+.+..+. .++.+++|+.|++++|.+..... ..+..+++|++|++++|
T Consensus 318 ~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N 397 (549)
T 2z81_A 318 ENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN 397 (549)
T ss_dssp ESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTC
T ss_pred ccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCC
Confidence 44433322222223455555555555555443321 23445555555555555544321 23445555555555555
Q ss_pred CCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHH
Q 009672 385 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 464 (529)
Q Consensus 385 ~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 464 (529)
.++.. +..+..+++|+.|++++|.++..... -.++|++|++++|++++. ...+++|++|++++| .++.. |
T Consensus 398 ~l~~l-p~~~~~~~~L~~L~Ls~N~l~~l~~~---~~~~L~~L~Ls~N~l~~~----~~~l~~L~~L~Ls~N-~l~~i-p 467 (549)
T 2z81_A 398 TFHPM-PDSCQWPEKMRFLNLSSTGIRVVKTC---IPQTLEVLDVSNNNLDSF----SLFLPRLQELYISRN-KLKTL-P 467 (549)
T ss_dssp CCCCC-CSCCCCCTTCCEEECTTSCCSCCCTT---SCTTCSEEECCSSCCSCC----CCCCTTCCEEECCSS-CCSSC-C
T ss_pred CCccC-ChhhcccccccEEECCCCCcccccch---hcCCceEEECCCCChhhh----cccCChhcEEECCCC-ccCcC-C
Confidence 55432 22334445555555555554432211 124566666666655543 246788888888888 67743 3
Q ss_pred HHHhCCCCCCeeeccCCccChhHHHhccCCCCCcEEeecCccCChh
Q 009672 465 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 510 (529)
Q Consensus 465 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 510 (529)
. ...+++|+.|++++|++++..+..+..+++|+.|++++|++++.
T Consensus 468 ~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 512 (549)
T 2z81_A 468 D-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 512 (549)
T ss_dssp C-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCC
T ss_pred C-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCC
Confidence 3 45688899999999988887777788888999999999987653
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-41 Score=362.48 Aligned_cols=448 Identities=22% Similarity=0.199 Sum_probs=274.1
Q ss_pred cCCceeEEEecCcccCchhhhhccCCCCCCeEeccCCcccCchhhhhccCCCCCCEEEcCCCCccchhHHHHHhCCCCCC
Q 009672 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134 (529)
Q Consensus 55 ~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 134 (529)
.++++++|+|++|.+++..+..|+.+++|++|++++|.......+..|+++++|++|+|++|. ++...|..|.++++|+
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~ 100 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK-IYFLHPDAFQGLFHLF 100 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC-CCEECTTSSCSCSSCC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc-CcccCHhHccCCcccC
Confidence 357899999999999988888999999999999999866666667889999999999999998 6777789999999999
Q ss_pred EEeccCccccccccc--cccCCCcCcEEeccCCcccCccc-cccccCCCCCCeEEccCCCCChhHHHHhhcc---Cccch
Q 009672 135 KLDLERCTRIHGGLV--NLKGLMKLESLNIKWCNCITDSD-MKPLSGLTNLKSLQISCSKVTDSGIAYLKGL---SISSV 208 (529)
Q Consensus 135 ~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~---~~~~~ 208 (529)
+|++++|......+. .++.+++|++|++++|. +.+.. ...++++++|++|++++|.++......+..+ .+..+
T Consensus 101 ~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L 179 (844)
T 3j0a_A 101 ELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFF 179 (844)
T ss_dssp CEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCC
T ss_pred EeeCcCCCCCcccccCccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceE
Confidence 999999865443343 38899999999999954 44433 3578899999999999998876544433322 11111
Q ss_pred hhhhhhhHHHhhhhhhhhcccC------CccEEEccCCCCCHHHHHHh--------------------------------
Q 009672 209 IFILCSMIIRLFCLHVFLTSLQ------KLTLLNLEGCPVTAACLDSL-------------------------------- 250 (529)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~------~L~~L~l~~~~~~~~~~~~~-------------------------------- 250 (529)
.+...... ...+..+..++ .|+.|++++|.+....+..+
T Consensus 180 ~L~~n~l~---~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~ 256 (844)
T 3j0a_A 180 SLAANSLY---SRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPD 256 (844)
T ss_dssp EECCSBSC---CCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGG
T ss_pred ECCCCccc---cccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCC
Confidence 11100000 00111112222 26666666664433222111
Q ss_pred ----hc--CCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEECCCCCCChhhhhhhcC
Q 009672 251 ----SA--LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 324 (529)
Q Consensus 251 ----~~--~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 324 (529)
.. .++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+....+..+..
T Consensus 257 ~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 336 (844)
T 3j0a_A 257 QNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYG 336 (844)
T ss_dssp GTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSS
T ss_pred hhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcC
Confidence 11 145666666666666555555556666666666666665554555666666666666666665555555666
Q ss_pred CCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhh--------------hh-cCCCCCcEEECCCCCCCHH
Q 009672 325 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR--------------KL-AGLSSLKSLNLDARQITDT 389 (529)
Q Consensus 325 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--------------~l-~~~~~L~~L~l~~~~~~~~ 389 (529)
+++|+.|++++|.+....+..+..+++|+.|++++|.+...... .+ ....+++.+++++|.+...
T Consensus 337 l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l 416 (844)
T 3j0a_A 337 LPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENL 416 (844)
T ss_dssp CTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSS
T ss_pred CCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccC
Confidence 66666666666666555555555666666666666655432110 00 0122344444544444432
Q ss_pred H-HHHHhcCCCCCEEecCCCCCChHHHH-hhhcCCCCcEEEccCCCCChh-----hhhhccCCCCCCeEecCCCCCCChh
Q 009672 390 G-LAALTSLTGLTHLDLFGARITDSGAA-YLRNFKNLRSLEICGGGLTDA-----GVKHIKDLSSLTLLNLSQNCNLTDK 462 (529)
Q Consensus 390 ~-~~~l~~~~~L~~L~l~~~~l~~~~~~-~~~~~~~L~~L~l~~~~l~~~-----~~~~~~~~~~L~~L~l~~~~~l~~~ 462 (529)
. ...+..+++|+.|++++|.++..... .+..+++|+.|++++|.++.. .+..+.++++|++|++++| .++..
T Consensus 417 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~ 495 (844)
T 3j0a_A 417 DILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN-YLNSL 495 (844)
T ss_dssp TTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHH-HHTTC
T ss_pred chhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCC-ccccc
Confidence 1 22334566666666666665543221 223455666666666655422 1223455566666666666 55555
Q ss_pred HHHHHhCCCCCCeeeccCCccChhHHHhccCCCCCcEEeecCccCChh
Q 009672 463 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 510 (529)
Q Consensus 463 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 510 (529)
.+..+..+++|+.|++++|.+++..+..+. ++|+.|++++|+++..
T Consensus 496 ~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~ 541 (844)
T 3j0a_A 496 PPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAP 541 (844)
T ss_dssp CTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCC
T ss_pred ChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCC
Confidence 555566666666666666666654443332 5566666666655543
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-39 Score=335.75 Aligned_cols=428 Identities=18% Similarity=0.165 Sum_probs=335.5
Q ss_pred HHHHHhcCCceeEEEecCcccCchhhhhccCCCCCCeEeccCCcc------cC--------------------------c
Q 009672 49 MDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQ------IS--------------------------D 96 (529)
Q Consensus 49 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~------~~--------------------------~ 96 (529)
.++.+....+|+.|+|+++.+++..++.++++++|++|+|++|.. +. .
T Consensus 73 ~GV~C~~~~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~ 152 (636)
T 4eco_A 73 PGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDY 152 (636)
T ss_dssp TTEEECTTCCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCC
T ss_pred CCeEEcCCCCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhcc
Confidence 444443336899999999999999999999999999999998842 00 0
Q ss_pred hhhhhcc-------------------CCCCCCEEEcC--CCCccchhHHHHHhCCCCCCEEeccCcccccc---------
Q 009672 97 GGLEHLR-------------------GLSNLTSLSFR--RNNAITAQGMKAFAGLINLVKLDLERCTRIHG--------- 146 (529)
Q Consensus 97 ~~~~~~~-------------------~l~~L~~L~l~--~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--------- 146 (529)
..+..+. ....++.+.+. .|. +++ +|..++++++|++|++++|. +.+
T Consensus 153 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~-l~~-ip~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~ 229 (636)
T 4eco_A 153 DPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNN-ITF-VSKAVMRLTKLRQFYMGNSP-FVAENICEAWEN 229 (636)
T ss_dssp CGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCE-EEE-ECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSC
T ss_pred CchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCC-Ccc-CCHHHhcccCCCEEECcCCc-cccccccccccc
Confidence 0000000 11123333333 233 556 78889999999999999986 445
Q ss_pred ---------cccccc--CCCcCcEEeccCCcccCccccccccCCCCCCeEEccCCC-CCh-hHHHHhhccCccchhhhhh
Q 009672 147 ---------GLVNLK--GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK-VTD-SGIAYLKGLSISSVIFILC 213 (529)
Q Consensus 147 ---------~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~-~~~~~l~~~~~~~~~~~~~ 213 (529)
.+..++ ++++|++|++++| .+.+..+..++++++|++|++++|. +++ ..+..+..+
T Consensus 230 ~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L---------- 298 (636)
T 4eco_A 230 ENSEYAQQYKTEDLKWDNLKDLTDVEVYNC-PNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQAL---------- 298 (636)
T ss_dssp TTSHHHHHHTTSCCCGGGCTTCCEEEEECC-TTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHH----------
T ss_pred cccchhcccCchhhhhcccCCCCEEEecCC-cCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhh----------
Confidence 677778 9999999999995 4556677889999999999999998 886 555544332
Q ss_pred hhHHHhhhhhhhhcccCCccEEEccCCCCCHHHHH--HhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCC
Q 009672 214 SMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLD--SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 291 (529)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 291 (529)
..+..+++|++|++++|.+. ..+. .+..+++|+.|++++|.+.+..+ .+..+++|++|++++|.+.
T Consensus 299 ----------~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~ 366 (636)
T 4eco_A 299 ----------ADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT 366 (636)
T ss_dssp ----------HHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE
T ss_pred ----------hccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc
Confidence 01234489999999999998 4555 78999999999999999985565 7788899999999999988
Q ss_pred hHHHHhhcCCCC-CCEEECCCCCCChhhhhhhcCC--CCCCeEEcCCCccChhhhhhcc-------CCCCCCeEeccCCC
Q 009672 292 DECLVHLKGLTN-LESLNLDSCGIGDEGLVNLTGL--CNLKCLELSDTQVGSSGLRHLS-------GLTNLESINLSFTG 361 (529)
Q Consensus 292 ~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~ 361 (529)
..|..+..+++ |+.|++++|.+.. .+..+... ++|+.|++++|.+....+..+. .+++|+.|++++|.
T Consensus 367 -~lp~~l~~l~~~L~~L~Ls~N~l~~-lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~ 444 (636)
T 4eco_A 367 -EIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ 444 (636)
T ss_dssp -ECCTTSEEECTTCCEEECCSSCCSS-CCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSC
T ss_pred -cccHhhhhhcccCcEEEccCCcCcc-cchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCc
Confidence 56667888898 9999999998874 44555544 4899999999999887776676 67899999999999
Q ss_pred CChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcC-------CCCCEEecCCCCCChHHHHhhh--cCCCCcEEEccCC
Q 009672 362 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL-------TGLTHLDLFGARITDSGAAYLR--NFKNLRSLEICGG 432 (529)
Q Consensus 362 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~-------~~L~~L~l~~~~l~~~~~~~~~--~~~~L~~L~l~~~ 432 (529)
+.......+..+++|+.|++++|.+...+...+... ++|+.|++++|.++..+ ..+. .+++|++|++++|
T Consensus 445 l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp-~~~~~~~l~~L~~L~Ls~N 523 (636)
T 4eco_A 445 ISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLS-DDFRATTLPYLVGIDLSYN 523 (636)
T ss_dssp CCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCC-GGGSTTTCTTCCEEECCSS
T ss_pred cCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccC-hhhhhccCCCcCEEECCCC
Confidence 987666667778999999999999986533333332 28999999999999654 4454 8999999999999
Q ss_pred CCChhhhhhccCCCCCCeEecC------CCCCCChhHHHHHhCCCCCCeeeccCCccChhHHHhccCCCCCcEEeecCcc
Q 009672 433 GLTDAGVKHIKDLSSLTLLNLS------QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 506 (529)
Q Consensus 433 ~l~~~~~~~~~~~~~L~~L~l~------~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 506 (529)
.+++ .+..+..+++|++|+++ +| .+....|..+..+++|+.|++++|.+... +..+. ++|+.|++++|+
T Consensus 524 ~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~i-p~~~~--~~L~~L~Ls~N~ 598 (636)
T 4eco_A 524 SFSK-FPTQPLNSSTLKGFGIRNQRDAQGN-RTLREWPEGITLCPSLTQLQIGSNDIRKV-NEKIT--PNISVLDIKDNP 598 (636)
T ss_dssp CCSS-CCCGGGGCSSCCEEECCSCBCTTCC-BCCCCCCTTGGGCSSCCEEECCSSCCCBC-CSCCC--TTCCEEECCSCT
T ss_pred CCCC-cChhhhcCCCCCEEECCCCcccccC-cccccChHHHhcCCCCCEEECCCCcCCcc-CHhHh--CcCCEEECcCCC
Confidence 9998 57778889999999995 45 56667788899999999999999999543 43343 899999999998
Q ss_pred CChh
Q 009672 507 VTAN 510 (529)
Q Consensus 507 ~~~~ 510 (529)
+++.
T Consensus 599 l~~~ 602 (636)
T 4eco_A 599 NISI 602 (636)
T ss_dssp TCEE
T ss_pred Cccc
Confidence 8764
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-39 Score=325.95 Aligned_cols=437 Identities=15% Similarity=0.129 Sum_probs=332.5
Q ss_pred CceeEEEecCcccCchhhhhccCCCCCCeEeccCCcccCchhhhhccCCCCCCEEEcCCCCccchhHHHHHhCCCCCCEE
Q 009672 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136 (529)
Q Consensus 57 ~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 136 (529)
+++++|++++|.+++..+..|+.+++|++|++++| .+....+..|+.+++|++|++++|. ++ .+|.. .+++|++|
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~-~lp~~--~l~~L~~L 95 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSHNK-LV-KISCH--PTVNLKHL 95 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSS-CCCEEEGGGGTTCTTCCEEECCSSC-CC-EEECC--CCCCCSEE
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCC-ccCCcChHHhhcccCCCEEecCCCc-ee-ecCcc--ccCCccEE
Confidence 67999999999998877788899999999999988 6887778889999999999999987 44 34444 78999999
Q ss_pred eccCcccccc-ccccccCCCcCcEEeccCCcccCccccccccCCCCC--CeEEccCCCC--ChhHHHHhhccCccchhhh
Q 009672 137 DLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL--KSLQISCSKV--TDSGIAYLKGLSISSVIFI 211 (529)
Q Consensus 137 ~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L--~~L~l~~~~~--~~~~~~~l~~~~~~~~~~~ 211 (529)
++++|..... .+..++.+++|++|++++| .+.. ..+..+++| ++|++++|.+ ....+..+..+......+.
T Consensus 96 ~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n-~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~ 171 (520)
T 2z7x_B 96 DLSFNAFDALPICKEFGNMSQLKFLGLSTT-HLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIV 171 (520)
T ss_dssp ECCSSCCSSCCCCGGGGGCTTCCEEEEEES-SCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEE
T ss_pred eccCCccccccchhhhccCCcceEEEecCc-ccch---hhccccccceeeEEEeecccccccccccccccccccceEEEE
Confidence 9999865442 4577888999999999884 4544 345566667 9999998887 4444444444321000000
Q ss_pred hhhhHHHhhhhhhhhcccCCccEEEccCCC-------CCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhh---cCCCcc
Q 009672 212 LCSMIIRLFCLHVFLTSLQKLTLLNLEGCP-------VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS---KIGSLK 281 (529)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~---~~~~L~ 281 (529)
..............+..+++|+.+++++|. +.+.. ..+..+++|+.|+++++.+....+..+. ..++|+
T Consensus 172 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~ 250 (520)
T 2z7x_B 172 FPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSIL-AKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVW 250 (520)
T ss_dssp CCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHH-HGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCS
T ss_pred eccCcchhhhhhhhhhcccceeeccccccccccccceeecch-hhhccccchhhccccccccCHHHHHHHHHHhhhCccc
Confidence 000000000112234567899999999886 44443 3778899999999999887765443322 356999
Q ss_pred EEEccCCCCChHHHHhh-----cCCCCCCEEECCCCCCChhhhhhhcCC---CCCCeEEcCCCccChhhhhhccCCCCCC
Q 009672 282 VLNLGFNEITDECLVHL-----KGLTNLESLNLDSCGIGDEGLVNLTGL---CNLKCLELSDTQVGSSGLRHLSGLTNLE 353 (529)
Q Consensus 282 ~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 353 (529)
+|++++|.+.+..|..+ ..+++|+.+++.++.+ ......+..+ ++|+.|++++|.+.... ....+++|+
T Consensus 251 ~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~ 327 (520)
T 2z7x_B 251 YFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFL 327 (520)
T ss_dssp EEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCC
T ss_pred EEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCccc
Confidence 99999998876667666 7889999999998876 2221333333 68999999999876542 126789999
Q ss_pred eEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHH--HHHHHhcCCCCCEEecCCCCCCh-HHHHhhhcCCCCcEEEcc
Q 009672 354 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT--GLAALTSLTGLTHLDLFGARITD-SGAAYLRNFKNLRSLEIC 430 (529)
Q Consensus 354 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~l~~~~l~~-~~~~~~~~~~~L~~L~l~ 430 (529)
.|++++|.+.+..+..+..+++|+.|++++|.+... .+..++.+++|+.|++++|.+.+ .+...+..+++|++|+++
T Consensus 328 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls 407 (520)
T 2z7x_B 328 HLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMS 407 (520)
T ss_dssp EEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECC
T ss_pred EEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECc
Confidence 999999999987788889999999999999999863 34678899999999999999998 555557889999999999
Q ss_pred CCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccChhHHHhccCCCCCcEEeecCccCChh
Q 009672 431 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 510 (529)
Q Consensus 431 ~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 510 (529)
+|.+++..+..+. ++|++|++++| .++. +|..+..+++|+.|++++|++.......+..+++|++|++++|++++.
T Consensus 408 ~N~l~~~~~~~l~--~~L~~L~Ls~N-~l~~-ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 408 SNILTDTIFRCLP--PRIKVLDLHSN-KIKS-IPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp SSCCCGGGGGSCC--TTCCEEECCSS-CCCC-CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCCCCcchhhhhc--ccCCEEECCCC-cccc-cchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCccc
Confidence 9999877666554 79999999999 7884 566666899999999999999976555688999999999999999863
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-39 Score=332.50 Aligned_cols=426 Identities=20% Similarity=0.217 Sum_probs=310.9
Q ss_pred eEEEecCcccCchhhhhccCCCCCCeEeccCCcccCchhhhhccCCCCCCEEEcCCCCccchhHHHHHhCCCCCCEEecc
Q 009672 60 LSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE 139 (529)
Q Consensus 60 ~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 139 (529)
++++.++.+++.. +..+ .+++++|++++| .++......|..+++|++|++++|. ++...+..|.++++|++|+++
T Consensus 10 ~~~~c~~~~l~~i-p~~l--~~~l~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~ 84 (570)
T 2z63_A 10 ITYQCMELNFYKI-PDNL--PFSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILT 84 (570)
T ss_dssp TEEECCSSCCSSC-CSSS--CSSCCEEECCSC-CCCEECTTTTTTCSSCCEEECTTCC-CCEECTTTTTTCTTCCEEECT
T ss_pred cEEEeCCCCcccc-CCCc--cccccEEEccCC-ccCccChhHhhCCCCceEEECCCCc-CCccCcccccCchhCCEEeCc
Confidence 4566666666532 2222 357999999998 6888878889999999999999998 667777889999999999999
Q ss_pred CccccccccccccCCCcCcEEeccCCcccCccccccccCCCCCCeEEccCCCCChhH-HHHhhccCccchhhhhhhhHHH
Q 009672 140 RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG-IAYLKGLSISSVIFILCSMIIR 218 (529)
Q Consensus 140 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~ 218 (529)
+|......+..++.+++|++|++++| .+.......++.+++|++|++++|.++... +..+
T Consensus 85 ~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~------------------ 145 (570)
T 2z63_A 85 GNPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF------------------ 145 (570)
T ss_dssp TCCCCEECTTTTTTCTTCCEEECTTS-CCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGG------------------
T ss_pred CCcCCccCHhhhcCcccccccccccc-ccccCCCccccccccccEEecCCCccceecChhhh------------------
Confidence 98755555678999999999999984 566555556899999999999999887532 3334
Q ss_pred hhhhhhhhcccCCccEEEccCCCCCHHHHHHhhcCCCC----CeEecCCCcCChhhhHhhh-------------------
Q 009672 219 LFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSL----FYLNLNRCQLSDDGCEKFS------------------- 275 (529)
Q Consensus 219 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L----~~L~l~~~~~~~~~~~~l~------------------- 275 (529)
.++++|+.|++++|.+....+..+..+++| ..+++++|.+....+..+.
T Consensus 146 --------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 217 (570)
T 2z63_A 146 --------SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVM 217 (570)
T ss_dssp --------GGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHH
T ss_pred --------cccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccch
Confidence 334788888888887766555555555555 6677776665544333332
Q ss_pred --------------------------------------------------------------cCCCccEEEccCCCCChH
Q 009672 276 --------------------------------------------------------------KIGSLKVLNLGFNEITDE 293 (529)
Q Consensus 276 --------------------------------------------------------------~~~~L~~L~l~~~~~~~~ 293 (529)
.+++|++|+++++.+..
T Consensus 218 ~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~- 296 (570)
T 2z63_A 218 KTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER- 296 (570)
T ss_dssp HHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECS-
T ss_pred hhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchh-
Confidence 23344444444444331
Q ss_pred HHHhhcCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhh--hhhhc
Q 009672 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS--LRKLA 371 (529)
Q Consensus 294 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~l~ 371 (529)
.+..+..+ +|++|++.+|.+..... ..+++|+.|++.+|.+....+. ..+++|+.|++++|.+.... +..+.
T Consensus 297 l~~~~~~~-~L~~L~l~~n~~~~l~~---~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~ 370 (570)
T 2z63_A 297 VKDFSYNF-GWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDF 370 (570)
T ss_dssp CCBCCSCC-CCSEEEEESCBCSSCCB---CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHH
T ss_pred hhhhhccC-CccEEeeccCcccccCc---ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCcccccccccc
Confidence 22233333 55555555554432111 2455666666666654433221 56788889999888887643 45677
Q ss_pred CCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHH-HhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCe
Q 009672 372 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA-AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 450 (529)
Q Consensus 372 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~ 450 (529)
.+++|+.|++++|.+...... +..+++|+.|++++|.+....+ ..+.++++|++|++++|.+....+..+.++++|++
T Consensus 371 ~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 449 (570)
T 2z63_A 371 GTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 449 (570)
T ss_dssp TCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCE
T ss_pred ccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcE
Confidence 888999999999888775443 7788999999999998876544 45788999999999999998877888888999999
Q ss_pred EecCCCCCCC-hhHHHHHhCCCCCCeeeccCCccChhHHHhccCCCCCcEEeecCccCChhHHHHhhcCCCCCceecCC
Q 009672 451 LNLSQNCNLT-DKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRP 528 (529)
Q Consensus 451 L~l~~~~~l~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~l~~l~~ 528 (529)
|++++| .++ ...|..+..+++|+.|++++|.+.+..+..+..+++|++|++++|+++......+. .+++|+.+++
T Consensus 450 L~l~~n-~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l 525 (570)
T 2z63_A 450 LKMAGN-SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFD--RLTSLQKIWL 525 (570)
T ss_dssp EECTTC-EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTT--TCTTCCEEEC
T ss_pred EECcCC-cCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhh--cccCCcEEEe
Confidence 999999 665 34667788899999999999999988788889999999999999999876555454 6788888765
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-39 Score=344.24 Aligned_cols=426 Identities=21% Similarity=0.224 Sum_probs=271.7
Q ss_pred eEEEecCcccCchhhhhccCCCCCCeEeccCCcccCchhhhhccCCCCCCEEEcCCCCccchhHHHHHhCCCCCCEEecc
Q 009672 60 LSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE 139 (529)
Q Consensus 60 ~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 139 (529)
+..+.++++++.... -.++|++|+|++| .++...+..|.++++|++|++++|.......|..|.++++|++|+++
T Consensus 7 ~~~dcs~~~L~~vP~----lp~~l~~LdLs~N-~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls 81 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ----VLNTTERLLLSFN-YIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81 (844)
T ss_dssp EEEEESCCCSSCCCS----SCTTCCEEEEESC-CCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECT
T ss_pred eEEEccCCCCCCCCC----CCCCcCEEECCCC-cCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECC
Confidence 567778888875432 4578999999998 68888888999999999999999965444458889999999999999
Q ss_pred CccccccccccccCCCcCcEEeccCCcccCccccc--cccCCCCCCeEEccCCCCChhHH-HHhhccCccchhhhhhhhH
Q 009672 140 RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK--PLSGLTNLKSLQISCSKVTDSGI-AYLKGLSISSVIFILCSMI 216 (529)
Q Consensus 140 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~ 216 (529)
+|......+..++.+++|++|++++| .+.+..+. .+..+++|++|++++|.++...+ ..+
T Consensus 82 ~N~l~~~~p~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~---------------- 144 (844)
T 3j0a_A 82 SSKIYFLHPDAFQGLFHLFELRLYFC-GLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSF---------------- 144 (844)
T ss_dssp TCCCCEECTTSSCSCSSCCCEECTTC-CCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGG----------------
T ss_pred CCcCcccCHhHccCCcccCEeeCcCC-CCCcccccCccccccCCCCEEECCCCcccccccchhH----------------
Confidence 98766666788999999999999995 45543443 38899999999999998876432 233
Q ss_pred HHhhhhhhhhcccCCccEEEccCCCCCHHHHHHhhcC--CCCCeEecCCCcCChhhhHhhhcC-----------------
Q 009672 217 IRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSAL--GSLFYLNLNRCQLSDDGCEKFSKI----------------- 277 (529)
Q Consensus 217 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~l~~~----------------- 277 (529)
+++++|+.|++++|.+....+..+..+ ++|+.|++++|.+....+..+..+
T Consensus 145 ----------~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n 214 (844)
T 3j0a_A 145 ----------GKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGN 214 (844)
T ss_dssp ----------GTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSC
T ss_pred ----------hhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCC
Confidence 334777777777776654333333322 444444444444333222222221
Q ss_pred ---------------------------------------------------CCccEEEccCCCCChHHHHhhcCCCCCCE
Q 009672 278 ---------------------------------------------------GSLKVLNLGFNEITDECLVHLKGLTNLES 306 (529)
Q Consensus 278 ---------------------------------------------------~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 306 (529)
++|+.|++++|.+....+..+..+++|+.
T Consensus 215 ~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 294 (844)
T 3j0a_A 215 GWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKV 294 (844)
T ss_dssp CSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCE
T ss_pred cCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCE
Confidence 34555555555444333334445555555
Q ss_pred EECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCC
Q 009672 307 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 386 (529)
Q Consensus 307 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 386 (529)
|++.+|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.......+..+++|+.|++++|.+
T Consensus 295 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 374 (844)
T 3j0a_A 295 LNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL 374 (844)
T ss_dssp EEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCS
T ss_pred EECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCC
Confidence 55555555444444455555555555555555444444455555555555555555544444455555555555555554
Q ss_pred CHHHHHHHhcCCCCCEEecCCCCC--------------------ChHH-HHhhhcCCCCcEEEccCCCCChhhhh-hccC
Q 009672 387 TDTGLAALTSLTGLTHLDLFGARI--------------------TDSG-AAYLRNFKNLRSLEICGGGLTDAGVK-HIKD 444 (529)
Q Consensus 387 ~~~~~~~l~~~~~L~~L~l~~~~l--------------------~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~-~~~~ 444 (529)
... ..+++|+.+++++|++ +... ...+..+++|+.|++++|.++..... .+..
T Consensus 375 ~~i-----~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 449 (844)
T 3j0a_A 375 TTI-----HFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSE 449 (844)
T ss_dssp CCC-----SSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCS
T ss_pred Ccc-----cCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccccccccc
Confidence 432 1133333333333322 2211 22345678888888888877754332 3445
Q ss_pred CCCCCeEecCCCCCCCh-----hHHHHHhCCCCCCeeeccCCccChhHHHhccCCCCCcEEeecCccCChhHHHHhhcCC
Q 009672 445 LSSLTLLNLSQNCNLTD-----KTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRD 519 (529)
Q Consensus 445 ~~~L~~L~l~~~~~l~~-----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 519 (529)
+++|++|++++| .++. ..+..+.++++|+.|++++|.+++..+..+..+++|+.|++++|+++......+.
T Consensus 450 ~~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--- 525 (844)
T 3j0a_A 450 NPSLEQLFLGEN-MLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--- 525 (844)
T ss_dssp CTTCCBCEEESC-CCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC---
T ss_pred CCccccccCCCC-ccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh---
Confidence 678888888888 5542 2234567789999999999999988888889999999999999998864333222
Q ss_pred CCCceecC
Q 009672 520 LPNLVSFR 527 (529)
Q Consensus 520 ~~~l~~l~ 527 (529)
++|+.|+
T Consensus 526 -~~L~~L~ 532 (844)
T 3j0a_A 526 -ANLEILD 532 (844)
T ss_dssp -SCCCEEE
T ss_pred -ccccEEE
Confidence 4555543
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-37 Score=317.14 Aligned_cols=426 Identities=20% Similarity=0.160 Sum_probs=280.7
Q ss_pred ceeEEEecCcccCchhhhhccCCCCCCeEeccCCcccCchhhhhccCCCCCCEEEcCCCCccchhHHHHHhCCCCCCEEe
Q 009672 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD 137 (529)
Q Consensus 58 ~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 137 (529)
...+.+.+++.++.. +..+ .++|++|++++| .+....+..|..+++|++|++++|. ++...+..|.++++|++|+
T Consensus 6 ~~~~c~~~~~~l~~i-p~~~--~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~ 80 (549)
T 2z81_A 6 ASGVCDGRSRSFTSI-PSGL--TAAMKSLDLSFN-KITYIGHGDLRACANLQVLILKSSR-INTIEGDAFYSLGSLEHLD 80 (549)
T ss_dssp TTSEEECTTSCCSSC-CSCC--CTTCCEEECCSS-CCCEECSSTTSSCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEE
T ss_pred CCceEECCCCccccc-cccC--CCCccEEECcCC-ccCccChhhhhcCCcccEEECCCCC-cCccChhhccccccCCEEE
Confidence 344467777777743 3333 379999999998 5888778889999999999999998 6777778899999999999
Q ss_pred ccCccccccccccccCCCcCcEEeccCCcccCc-cccccccCCCCCCeEEccCCC-CChhHHHHhhccCccchhhhhhhh
Q 009672 138 LERCTRIHGGLVNLKGLMKLESLNIKWCNCITD-SDMKPLSGLTNLKSLQISCSK-VTDSGIAYLKGLSISSVIFILCSM 215 (529)
Q Consensus 138 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~~~~~~~~~~~ 215 (529)
+++|......+..++.+++|++|++++|. +.. ..+..+..+++|++|++++|. +.......+
T Consensus 81 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~--------------- 144 (549)
T 2z81_A 81 LSDNHLSSLSSSWFGPLSSLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF--------------- 144 (549)
T ss_dssp CTTSCCCSCCHHHHTTCTTCCEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTT---------------
T ss_pred CCCCccCccCHHHhccCCCCcEEECCCCc-ccccchhhhhhccCCccEEECCCCccccccCHhhh---------------
Confidence 99986555555668999999999999954 443 345678899999999999987 443322333
Q ss_pred HHHhhhhhhhhcccCCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHH-
Q 009672 216 IIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC- 294 (529)
Q Consensus 216 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~- 294 (529)
..+++|++|++++|.+.+..+..+..+++|+.|+++.+.+.......+..+++|++|++++|.+.+..
T Consensus 145 -----------~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 213 (549)
T 2z81_A 145 -----------AGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQF 213 (549)
T ss_dssp -----------TTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCC
T ss_pred -----------hcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccc
Confidence 44499999999999998877888899999999999999887655444567899999999999887531
Q ss_pred --HHhhcCCCCCCEEECCCCCCChhhhhh----hcCCCCCCeEEcCCCc-------------------------------
Q 009672 295 --LVHLKGLTNLESLNLDSCGIGDEGLVN----LTGLCNLKCLELSDTQ------------------------------- 337 (529)
Q Consensus 295 --~~~~~~~~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~~~------------------------------- 337 (529)
......+++|+.|++.++.+....... +..+++|+.+++.+|.
T Consensus 214 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i 293 (549)
T 2z81_A 214 SPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHI 293 (549)
T ss_dssp CCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBC
T ss_pred cccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhccccccccccccc
Confidence 112345789999999988665433322 2233444444444433
Q ss_pred ----------------------------cChhhhhhccCCCCCCeEeccCCCCChhhh---hhhcCCCCCcEEECCCCCC
Q 009672 338 ----------------------------VGSSGLRHLSGLTNLESINLSFTGISDGSL---RKLAGLSSLKSLNLDARQI 386 (529)
Q Consensus 338 ----------------------------~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~l~~~~~L~~L~l~~~~~ 386 (529)
+.......+..+++|+.|++++|.+.+..+ ..++.+++|+.|++++|.+
T Consensus 294 ~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l 373 (549)
T 2z81_A 294 PQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHL 373 (549)
T ss_dssp SCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCC
T ss_pred chhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcc
Confidence 222211222334455555555555444322 1233444555555555555
Q ss_pred CHHHH--HHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHH
Q 009672 387 TDTGL--AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 464 (529)
Q Consensus 387 ~~~~~--~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 464 (529)
+.... ..+..+++|+.|++++|+++.. +..+..+++|++|++++|.++.... .+ .++|++|++++| .++..
T Consensus 374 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~~~~L~~L~Ls~N~l~~l~~-~~--~~~L~~L~Ls~N-~l~~~-- 446 (549)
T 2z81_A 374 RSMQKTGEILLTLKNLTSLDISRNTFHPM-PDSCQWPEKMRFLNLSSTGIRVVKT-CI--PQTLEVLDVSNN-NLDSF-- 446 (549)
T ss_dssp CCHHHHHHHGGGCTTCCEEECTTCCCCCC-CSCCCCCTTCCEEECTTSCCSCCCT-TS--CTTCSEEECCSS-CCSCC--
T ss_pred cccccchhhhhcCCCCCEEECCCCCCccC-ChhhcccccccEEECCCCCcccccc-hh--cCCceEEECCCC-Chhhh--
Confidence 44321 2344455555555555544432 2233444555555555555443211 11 135666666666 45543
Q ss_pred HHHhCCCCCCeeeccCCccChhHHHhccCCCCCcEEeecCccCChhHHHHhhcCCCCCceecCC
Q 009672 465 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRP 528 (529)
Q Consensus 465 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~l~~l~~ 528 (529)
...+++|+.|++++|.+..... ...+++|+.|++++|+++......+. .+++|+.|++
T Consensus 447 --~~~l~~L~~L~Ls~N~l~~ip~--~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~l 504 (549)
T 2z81_A 447 --SLFLPRLQELYISRNKLKTLPD--ASLFPVLLVMKISRNQLKSVPDGIFD--RLTSLQKIWL 504 (549)
T ss_dssp --CCCCTTCCEEECCSSCCSSCCC--GGGCTTCCEEECCSSCCCCCCTTGGG--GCTTCCEEEC
T ss_pred --cccCChhcEEECCCCccCcCCC--cccCccCCEEecCCCccCCcCHHHHh--cCcccCEEEe
Confidence 2467888888888888875332 34678899999999988876555455 6778877765
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-38 Score=316.04 Aligned_cols=421 Identities=18% Similarity=0.144 Sum_probs=315.3
Q ss_pred eEEEecCcccCchhhhhccCCCCCCeEeccCCcccCchhhhhccCCCCCCEEEcCCCCccchhHHHHHhCCCCCCEEecc
Q 009672 60 LSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE 139 (529)
Q Consensus 60 ~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 139 (529)
++++++++.++. .+..+. ++|++|++++| .+....+..|..+++|++|++++|. ++...|..|.++++|++|+++
T Consensus 3 ~~l~ls~n~l~~-ip~~~~--~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls 77 (520)
T 2z7x_B 3 FLVDRSKNGLIH-VPKDLS--QKTTILNISQN-YISELWTSDILSLSKLRILIISHNR-IQYLDISVFKFNQELEYLDLS 77 (520)
T ss_dssp CEEECTTSCCSS-CCCSCC--TTCSEEECCSS-CCCCCCHHHHTTCTTCCEEECCSSC-CCEEEGGGGTTCTTCCEEECC
T ss_pred ceEecCCCCccc-cccccc--ccccEEECCCC-cccccChhhccccccccEEecCCCc-cCCcChHHhhcccCCCEEecC
Confidence 689999999984 444343 89999999998 6888777899999999999999998 677778899999999999999
Q ss_pred CccccccccccccCCCcCcEEeccCCcccCc-cccccccCCCCCCeEEccCCCCChhHHHHhhccCccchhhhhhhhHHH
Q 009672 140 RCTRIHGGLVNLKGLMKLESLNIKWCNCITD-SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIR 218 (529)
Q Consensus 140 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 218 (529)
+|... ..+.. .+++|++|++++|. +.. ..+..++.+++|++|++++|.++... +..+
T Consensus 78 ~N~l~-~lp~~--~l~~L~~L~L~~N~-l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~---~~~l--------------- 135 (520)
T 2z7x_B 78 HNKLV-KISCH--PTVNLKHLDLSFNA-FDALPICKEFGNMSQLKFLGLSTTHLEKSS---VLPI--------------- 135 (520)
T ss_dssp SSCCC-EEECC--CCCCCSEEECCSSC-CSSCCCCGGGGGCTTCCEEEEEESSCCGGG---GGGG---------------
T ss_pred CCcee-ecCcc--ccCCccEEeccCCc-cccccchhhhccCCcceEEEecCcccchhh---cccc---------------
Confidence 98543 33333 88999999999954 554 45678999999999999999988633 2222
Q ss_pred hhhhhhhhcccCCc--cEEEccCCCC--CHHHHHHhh--------------------------cCCCCCeEecCCCc---
Q 009672 219 LFCLHVFLTSLQKL--TLLNLEGCPV--TAACLDSLS--------------------------ALGSLFYLNLNRCQ--- 265 (529)
Q Consensus 219 ~~~~~~~~~~~~~L--~~L~l~~~~~--~~~~~~~~~--------------------------~~~~L~~L~l~~~~--- 265 (529)
++| +.|++++|.+ ....+..+. .+++|+.+++++|.
T Consensus 136 -----------~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 204 (520)
T 2z7x_B 136 -----------AHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDN 204 (520)
T ss_dssp -----------TTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTT
T ss_pred -----------ccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeecccccccccc
Confidence 555 7777777665 333333333 35667777776664
Q ss_pred ----CChhhhHhhhcCCCccEEEccCCCCChHHHHhhc---CCCCCCEEECCCCCCChhhhhhh-----cCCCCCCeEEc
Q 009672 266 ----LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK---GLTNLESLNLDSCGIGDEGLVNL-----TGLCNLKCLEL 333 (529)
Q Consensus 266 ----~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l 333 (529)
+.+.. ..+..+++|+.|+++++.+.+..+..+. ..++|++|++++|.+....+..+ ..+++|+.+++
T Consensus 205 ~~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l 283 (520)
T 2z7x_B 205 KCSYFLSIL-AKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQV 283 (520)
T ss_dssp TTHHHHHHH-HGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEE
T ss_pred ccceeecch-hhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccc
Confidence 33322 3566777888888877776654332221 24688888888876654445555 66778888888
Q ss_pred CCCccChhhhhhccC---CCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCC
Q 009672 334 SDTQVGSSGLRHLSG---LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 410 (529)
Q Consensus 334 ~~~~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l 410 (529)
+++.+ ......+.. ..+|+.|++++|.+.... ....+++|++|++++|.+.+..+..++.+++|+.|++++|++
T Consensus 284 ~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l 360 (520)
T 2z7x_B 284 VSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQL 360 (520)
T ss_dssp EECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCC
T ss_pred cccce-ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCcc
Confidence 87766 221122222 257899999998876532 125789999999999999986677788999999999999999
Q ss_pred ChH--HHHhhhcCCCCcEEEccCCCCCh-hhhhhccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccChhH
Q 009672 411 TDS--GAAYLRNFKNLRSLEICGGGLTD-AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 487 (529)
Q Consensus 411 ~~~--~~~~~~~~~~L~~L~l~~~~l~~-~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 487 (529)
++. .+..+..+++|++|++++|.+.+ .....+..+++|++|++++| .++...+..+. ++|+.|++++|.+...
T Consensus 361 ~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~--~~L~~L~Ls~N~l~~i- 436 (520)
T 2z7x_B 361 KELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN-ILTDTIFRCLP--PRIKVLDLHSNKIKSI- 436 (520)
T ss_dssp CBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSS-CCCGGGGGSCC--TTCCEEECCSSCCCCC-
T ss_pred CccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCC-CCCcchhhhhc--ccCCEEECCCCccccc-
Confidence 974 45678999999999999999988 44445788899999999999 78776554432 7999999999999854
Q ss_pred HHhccCCCCCcEEeecCccCChhHHHHhhcCCCCCceecCC
Q 009672 488 LRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRP 528 (529)
Q Consensus 488 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~l~~l~~ 528 (529)
+..+..+++|++|++++|+++..+...+. .+++|+.|++
T Consensus 437 p~~~~~l~~L~~L~L~~N~l~~l~~~~~~--~l~~L~~L~l 475 (520)
T 2z7x_B 437 PKQVVKLEALQELNVASNQLKSVPDGIFD--RLTSLQKIWL 475 (520)
T ss_dssp CGGGGGCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEEC
T ss_pred chhhhcCCCCCEEECCCCcCCccCHHHhc--cCCcccEEEC
Confidence 44556899999999999999865443343 6788888765
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-39 Score=335.00 Aligned_cols=422 Identities=17% Similarity=0.157 Sum_probs=326.3
Q ss_pred CCceeEEEecCcccCchhhhhccCCCCCCeEec-cCCcccCchhhhh---------------------------------
Q 009672 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDF-NFCIQISDGGLEH--------------------------------- 101 (529)
Q Consensus 56 ~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l-~~~~~~~~~~~~~--------------------------------- 101 (529)
..+++.|+|+++.+++..++.++++++|+.|+| ++| .+.+..+..
T Consensus 322 ~~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N-~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~ 400 (876)
T 4ecn_A 322 NGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHS-ETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNL 400 (876)
T ss_dssp TSCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTT-HHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGS
T ss_pred CCCEEEEECccCCCCCcCchHHhccccceEeeecccc-cccccccccccccccccchhHHHHHHHhhhhhhhccCcchhh
Confidence 367999999999999999999999999999999 554 332220000
Q ss_pred -------c-----------cCCCCCCEEEcCC--CCccchhHHHHHhCCCCCCEEeccCcccccc---------------
Q 009672 102 -------L-----------RGLSNLTSLSFRR--NNAITAQGMKAFAGLINLVKLDLERCTRIHG--------------- 146 (529)
Q Consensus 102 -------~-----------~~l~~L~~L~l~~--~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--------------- 146 (529)
+ .....++.+.+.. |. +++ +|..+.++++|++|++++|.....
T Consensus 401 s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~-L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~ 478 (876)
T 4ecn_A 401 SDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNR-ITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAK 478 (876)
T ss_dssp CHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCE-EEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHH
T ss_pred hHHHHHHhhhCccccccccccccchhhceeccccCc-ccc-hhHHHhcCCCCCEEECcCCcCCCCccccccccccccccc
Confidence 0 1112333333333 33 444 788899999999999999864331
Q ss_pred --cccccc--CCCcCcEEeccCCcccCccccccccCCCCCCeEEccCCC-CCh-hHHHHhhccCccchhhhhhhhHHHhh
Q 009672 147 --GLVNLK--GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK-VTD-SGIAYLKGLSISSVIFILCSMIIRLF 220 (529)
Q Consensus 147 --~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~ 220 (529)
.+..++ ++++|+.|++++|. +.+..+..+.++++|+.|++++|. ++. ..+..+..+
T Consensus 479 g~iP~~l~f~~L~~L~~L~Ls~N~-l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L----------------- 540 (876)
T 4ecn_A 479 QYENEELSWSNLKDLTDVELYNCP-NMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRL----------------- 540 (876)
T ss_dssp HHTTSCCCGGGCTTCCEEEEESCT-TCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHH-----------------
T ss_pred ccCChhhhhccCCCCCEEECcCCC-CCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhh-----------------
Confidence 566666 99999999999854 555677889999999999999998 887 555555433
Q ss_pred hhhhhhcccCCccEEEccCCCCCHHHHH--HhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhh
Q 009672 221 CLHVFLTSLQKLTLLNLEGCPVTAACLD--SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 298 (529)
Q Consensus 221 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 298 (529)
...+..+++|+.|++++|.+. ..+. .+..+++|+.|++++|.+. ..+ .+..+++|+.|++++|.+. ..|..+
T Consensus 541 --~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l 614 (876)
T 4ecn_A 541 --ADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDF 614 (876)
T ss_dssp --HHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTS
T ss_pred --hhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHH
Confidence 112345579999999999998 4555 7899999999999999998 444 7888999999999999998 567678
Q ss_pred cCCCC-CCEEECCCCCCChhhhhhhcCCC--CCCeEEcCCCccChhhhhh---cc--CCCCCCeEeccCCCCChhhhhhh
Q 009672 299 KGLTN-LESLNLDSCGIGDEGLVNLTGLC--NLKCLELSDTQVGSSGLRH---LS--GLTNLESINLSFTGISDGSLRKL 370 (529)
Q Consensus 299 ~~~~~-L~~L~l~~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~---~~--~~~~L~~L~l~~~~~~~~~~~~l 370 (529)
..+++ |+.|++++|.+.. .+..+...+ +|+.|++++|.+....+.. +. .+++|+.|++++|.+.......+
T Consensus 615 ~~l~~~L~~L~Ls~N~L~~-lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~ 693 (876)
T 4ecn_A 615 CAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELF 693 (876)
T ss_dssp CEECTTCCEEECCSSCCCS-CCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHH
T ss_pred hhccccCCEEECcCCCCCc-CchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHH
Confidence 88888 9999999998874 445555544 4999999999987654321 12 34589999999999997666666
Q ss_pred cCCCCCcEEECCCCCCCHHHHHHHh-------cCCCCCEEecCCCCCChHHHHhhh--cCCCCcEEEccCCCCChhhhhh
Q 009672 371 AGLSSLKSLNLDARQITDTGLAALT-------SLTGLTHLDLFGARITDSGAAYLR--NFKNLRSLEICGGGLTDAGVKH 441 (529)
Q Consensus 371 ~~~~~L~~L~l~~~~~~~~~~~~l~-------~~~~L~~L~l~~~~l~~~~~~~~~--~~~~L~~L~l~~~~l~~~~~~~ 441 (529)
..+++|+.|++++|.+...+...+. ++++|+.|++++|.++.. +..+. .+++|+.|++++|.+++. +..
T Consensus 694 ~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~l-p~~l~~~~l~~L~~L~Ls~N~L~~l-p~~ 771 (876)
T 4ecn_A 694 ATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSL-SDDFRATTLPYLSNMDVSYNCFSSF-PTQ 771 (876)
T ss_dssp HTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCC-CGGGSTTTCTTCCEEECCSSCCSSC-CCG
T ss_pred ccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccc-hHHhhhccCCCcCEEEeCCCCCCcc-chh
Confidence 6889999999999999855333332 233899999999999965 44554 899999999999999884 667
Q ss_pred ccCCCCCCeEecCCCC-----CCChhHHHHHhCCCCCCeeeccCCccChhHHHhccCCCCCcEEeecCccCChh
Q 009672 442 IKDLSSLTLLNLSQNC-----NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 510 (529)
Q Consensus 442 ~~~~~~L~~L~l~~~~-----~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 510 (529)
+..+++|+.|++++|+ .+....|..+..+++|+.|++++|.+.. .+..+ .++|+.|++++|++...
T Consensus 772 l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~-Ip~~l--~~~L~~LdLs~N~l~~i 842 (876)
T 4ecn_A 772 PLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-VDEKL--TPQLYILDIADNPNISI 842 (876)
T ss_dssp GGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCB-CCSCC--CSSSCEEECCSCTTCEE
T ss_pred hhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCc-cCHhh--cCCCCEEECCCCCCCcc
Confidence 8889999999997732 5666778889999999999999999954 44444 37999999999988654
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-37 Score=316.73 Aligned_cols=408 Identities=16% Similarity=0.178 Sum_probs=322.6
Q ss_pred CCCCeEeccCCcccCchhhhhccCCCCCCEEEcCCCCcc-----ch------hHHH------------------------
Q 009672 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAI-----TA------QGMK------------------------ 125 (529)
Q Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-----~~------~~~~------------------------ 125 (529)
.+++.|+|+++ .+.+..+..++++++|++|+|++|... .+ ..|.
T Consensus 81 ~~V~~L~L~~~-~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~ 159 (636)
T 4eco_A 81 GRVTGLSLEGF-GASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFS 159 (636)
T ss_dssp CCEEEEECTTS-CCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEEecCc-ccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHH
Confidence 48999999998 688777899999999999999998530 00 0000
Q ss_pred -----HH-----------hCCCCCCEEeccC-ccccccccccccCCCcCcEEeccCCcccCcc-----------------
Q 009672 126 -----AF-----------AGLINLVKLDLER-CTRIHGGLVNLKGLMKLESLNIKWCNCITDS----------------- 171 (529)
Q Consensus 126 -----~~-----------~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~----------------- 171 (529)
.+ .....++.+.+.. ++.+.+.+..++++++|++|++++|. +.+.
T Consensus 160 ~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ 238 (636)
T 4eco_A 160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQY 238 (636)
T ss_dssp HHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCc-cccccccccccccccchhccc
Confidence 00 0111222333322 23455566789999999999999954 7664
Q ss_pred cccccc--CCCCCCeEEccCCCCChhHHHHhhccCccchhhhhhhhHHHhhhhhhhhcccCCccEEEccCCC-CCH-HHH
Q 009672 172 DMKPLS--GLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCP-VTA-ACL 247 (529)
Q Consensus 172 ~~~~l~--~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~ 247 (529)
.|..++ ++++|++|++++|.+....+..+ .++++|++|++++|. +.+ ..|
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l--------------------------~~l~~L~~L~Ls~n~~l~~~~lp 292 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL--------------------------KALPEMQLINVACNRGISGEQLK 292 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTT--------------------------TTCSSCCEEECTTCTTSCHHHHH
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHH--------------------------hcCCCCCEEECcCCCCCccccch
Confidence 778888 99999999999998876544444 445999999999998 887 778
Q ss_pred HHhhcC------CCCCeEecCCCcCChhhhH--hhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEECCCCCCChhhh
Q 009672 248 DSLSAL------GSLFYLNLNRCQLSDDGCE--KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 319 (529)
Q Consensus 248 ~~~~~~------~~L~~L~l~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 319 (529)
..+..+ ++|+.|++++|.+. ..+. .+..+++|++|++++|.+.+..+ .+..+++|+.|++++|.+. ..+
T Consensus 293 ~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp 369 (636)
T 4eco_A 293 DDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIP 369 (636)
T ss_dssp HHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECC
T ss_pred HHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-ccc
Confidence 777765 99999999999998 4555 78899999999999999986667 7888999999999999877 355
Q ss_pred hhhcCCCC-CCeEEcCCCccChhhhhhccCC--CCCCeEeccCCCCChhhhhhhc-------CCCCCcEEECCCCCCCHH
Q 009672 320 VNLTGLCN-LKCLELSDTQVGSSGLRHLSGL--TNLESINLSFTGISDGSLRKLA-------GLSSLKSLNLDARQITDT 389 (529)
Q Consensus 320 ~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~l~-------~~~~L~~L~l~~~~~~~~ 389 (529)
..+..+++ |+.|++++|.++ ..+..+... ++|+.|++++|.+....+..+. .+++|+.|++++|.+...
T Consensus 370 ~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~l 448 (636)
T 4eco_A 370 ANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKF 448 (636)
T ss_dssp TTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSC
T ss_pred HhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcC
Confidence 66888898 999999999988 444455544 4899999999999887777776 678999999999999977
Q ss_pred HHHHHhcCCCCCEEecCCCCCChHHHHhhhcC-------CCCcEEEccCCCCChhhhhhcc--CCCCCCeEecCCCCCCC
Q 009672 390 GLAALTSLTGLTHLDLFGARITDSGAAYLRNF-------KNLRSLEICGGGLTDAGVKHIK--DLSSLTLLNLSQNCNLT 460 (529)
Q Consensus 390 ~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~-------~~L~~L~l~~~~l~~~~~~~~~--~~~~L~~L~l~~~~~l~ 460 (529)
+...+..+++|+.|++++|.++..+...+... ++|++|++++|.++.. +..+. .+++|++|++++| .++
T Consensus 449 p~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~~~l~~L~~L~Ls~N-~l~ 526 (636)
T 4eco_A 449 PKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKL-SDDFRATTLPYLVGIDLSYN-SFS 526 (636)
T ss_dssp CTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBC-CGGGSTTTCTTCCEEECCSS-CCS
T ss_pred CHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCcc-ChhhhhccCCCcCEEECCCC-CCC
Confidence 66667789999999999999996655444433 3999999999999954 55565 8999999999999 788
Q ss_pred hhHHHHHhCCCCCCeeec------cCCccChhHHHhccCCCCCcEEeecCccCChhHHHHhhcCCCCCceecCC
Q 009672 461 DKTLELISGLTGLVSLNV------SNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRP 528 (529)
Q Consensus 461 ~~~~~~l~~l~~L~~L~l------~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~l~~l~~ 528 (529)
. +|..+..+++|+.|++ ++|.+.+..+..+..+++|++|++++|+++.. +....++|+.|++
T Consensus 527 ~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~i-----p~~~~~~L~~L~L 594 (636)
T 4eco_A 527 K-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKV-----NEKITPNISVLDI 594 (636)
T ss_dssp S-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBC-----CSCCCTTCCEEEC
T ss_pred C-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCcc-----CHhHhCcCCEEEC
Confidence 7 6778889999999999 45777777788889999999999999999543 2223477877764
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-36 Score=317.36 Aligned_cols=406 Identities=15% Similarity=0.144 Sum_probs=314.4
Q ss_pred CCCCeEeccCCcccCchhhhhccCCCCCCEEEc-CCCCccchh-------------------------------------
Q 009672 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF-RRNNAITAQ------------------------------------- 122 (529)
Q Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l-~~~~~~~~~------------------------------------- 122 (529)
.++..|+|+++ .+.+..+..|+++++|++|+| ++|. +++.
T Consensus 323 ~~V~~L~Ls~~-~L~G~ip~~l~~L~~L~~LdLss~N~-lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~ 400 (876)
T 4ecn_A 323 GRVTGLSLAGF-GAKGRVPDAIGQLTELKVLSFGTHSE-TVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNL 400 (876)
T ss_dssp SCEEEEECTTT-CCEEEECGGGGGCTTCCEEESCCTTH-HHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGS
T ss_pred CCEEEEECccC-CCCCcCchHHhccccceEeeeccccc-ccccccccccccccccchhHHHHHHHhhhhhhhccCcchhh
Confidence 57999999998 688888899999999999999 6554 2222
Q ss_pred ---HHHHHhC-----------CCCCCEEeccC-ccccccccccccCCCcCcEEeccCCcccCc-----------------
Q 009672 123 ---GMKAFAG-----------LINLVKLDLER-CTRIHGGLVNLKGLMKLESLNIKWCNCITD----------------- 170 (529)
Q Consensus 123 ---~~~~~~~-----------~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----------------- 170 (529)
.+..+.. ...++.+.+.. ++.+.+.+..++++++|+.|++++| .+.+
T Consensus 401 s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N-~Lsg~~i~~~~~~~s~n~~~g 479 (876)
T 4ecn_A 401 SDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANS-PFTYDNIAVDWEDANSDYAKQ 479 (876)
T ss_dssp CHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHH
T ss_pred hHHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCC-cCCCCcccccccccccccccc
Confidence 1111111 11233333332 1234446678999999999999995 4665
Q ss_pred ccccccc--CCCCCCeEEccCCCCChhHHHHhhccCccchhhhhhhhHHHhhhhhhhhcccCCccEEEccCCC-CCH-HH
Q 009672 171 SDMKPLS--GLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCP-VTA-AC 246 (529)
Q Consensus 171 ~~~~~l~--~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~ 246 (529)
..|..++ ++++|+.|++++|.+....+..+.. +++|+.|++++|. +.. ..
T Consensus 480 ~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~--------------------------L~~L~~L~Ls~N~~lsg~~i 533 (876)
T 4ecn_A 480 YENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD--------------------------LPELQSLNIACNRGISAAQL 533 (876)
T ss_dssp HTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG--------------------------CSSCCEEECTTCTTSCHHHH
T ss_pred cCChhhhhccCCCCCEEECcCCCCCccChHHHhC--------------------------CCCCCEEECcCCCCcccccc
Confidence 2677777 9999999999999877655544444 4999999999998 887 67
Q ss_pred HHHhhcC-------CCCCeEecCCCcCChhhhH--hhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEECCCCCCChh
Q 009672 247 LDSLSAL-------GSLFYLNLNRCQLSDDGCE--KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 317 (529)
Q Consensus 247 ~~~~~~~-------~~L~~L~l~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 317 (529)
|..+..+ ++|+.|++++|.+. ..|. .+..+++|+.|++++|.+. ..| .+..+++|+.|++++|.+. .
T Consensus 534 P~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~ 609 (876)
T 4ecn_A 534 KADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-E 609 (876)
T ss_dssp HHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-C
T ss_pred hHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-c
Confidence 7766655 49999999999998 4555 7889999999999999998 555 7889999999999999888 4
Q ss_pred hhhhhcCCCC-CCeEEcCCCccChhhhhhccCCC--CCCeEeccCCCCChhhhh---hhc--CCCCCcEEECCCCCCCHH
Q 009672 318 GLVNLTGLCN-LKCLELSDTQVGSSGLRHLSGLT--NLESINLSFTGISDGSLR---KLA--GLSSLKSLNLDARQITDT 389 (529)
Q Consensus 318 ~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~---~l~--~~~~L~~L~l~~~~~~~~ 389 (529)
.+..+..+++ |+.|++++|.+. ..+..+...+ +|+.|++++|.+....+. .+. .+++|+.|++++|.+...
T Consensus 610 lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~l 688 (876)
T 4ecn_A 610 IPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKF 688 (876)
T ss_dssp CCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSC
T ss_pred chHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCcc
Confidence 5666888888 999999999988 3445555544 499999999988764331 122 345899999999999977
Q ss_pred HHHHHhcCCCCCEEecCCCCCChHHHHhhhc-------CCCCcEEEccCCCCChhhhhhcc--CCCCCCeEecCCCCCCC
Q 009672 390 GLAALTSLTGLTHLDLFGARITDSGAAYLRN-------FKNLRSLEICGGGLTDAGVKHIK--DLSSLTLLNLSQNCNLT 460 (529)
Q Consensus 390 ~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~-------~~~L~~L~l~~~~l~~~~~~~~~--~~~~L~~L~l~~~~~l~ 460 (529)
+...+..+++|+.|++++|.+...+...+.. +++|+.|++++|.++.. +..+. .+++|+.|++++| .++
T Consensus 689 p~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~l-p~~l~~~~l~~L~~L~Ls~N-~L~ 766 (876)
T 4ecn_A 689 PTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSL-SDDFRATTLPYLSNMDVSYN-CFS 766 (876)
T ss_dssp CHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCC-CGGGSTTTCTTCCEEECCSS-CCS
T ss_pred CHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccc-hHHhhhccCCCcCEEEeCCC-CCC
Confidence 6666678999999999999998655444432 34999999999999854 55665 8999999999999 787
Q ss_pred hhHHHHHhCCCCCCeeeccC------CccChhHHHhccCCCCCcEEeecCccCChhHHHHhhcCCCCCceecCC
Q 009672 461 DKTLELISGLTGLVSLNVSN------SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRP 528 (529)
Q Consensus 461 ~~~~~~l~~l~~L~~L~l~~------~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~l~~l~~ 528 (529)
. +|..+..+++|+.|++++ |.+.+..+..+..+++|+.|++++|+++. ++....++|+.|++
T Consensus 767 ~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~-----Ip~~l~~~L~~LdL 834 (876)
T 4ecn_A 767 S-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-----VDEKLTPQLYILDI 834 (876)
T ss_dssp S-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCB-----CCSCCCSSSCEEEC
T ss_pred c-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCc-----cCHhhcCCCCEEEC
Confidence 7 577788999999999976 77777777889999999999999999953 23223467777754
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-36 Score=308.89 Aligned_cols=440 Identities=15% Similarity=0.118 Sum_probs=317.6
Q ss_pred CCceeEEEecCcccCchhhhhccCCCCCCeEeccCCcccCchhhhhccCCCCCCEEEcCCCCccchhHHHHHhCCCCCCE
Q 009672 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135 (529)
Q Consensus 56 ~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 135 (529)
++++++|++++|.+++..+..|+.+++|++|++++| .++...+..|..+++|++|++++|. ++ .+|.. .+++|++
T Consensus 51 ~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~-~lp~~--~l~~L~~ 125 (562)
T 3a79_B 51 PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDVSHNR-LQ-NISCC--PMASLRH 125 (562)
T ss_dssp CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECTTSC-CC-EECSC--CCTTCSE
T ss_pred CCCcCEEECCCCCccccChhhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCCEEECCCCc-CC-ccCcc--ccccCCE
Confidence 377999999999998877788899999999999987 6887777888889999999999988 44 34444 7889999
Q ss_pred EeccCccccccc-cccccCCCcCcEEeccCCcccCccccccccCCCCCCeEEccCCCC--ChhHHHHhhccCccchhhhh
Q 009672 136 LDLERCTRIHGG-LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKV--TDSGIAYLKGLSISSVIFIL 212 (529)
Q Consensus 136 L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~--~~~~~~~l~~~~~~~~~~~~ 212 (529)
|++++|...... +..++.+++|++|++++ +.+.......+.++ +|++|++++|.+ +...+..+..+......+..
T Consensus 126 L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~L-~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l 203 (562)
T 3a79_B 126 LDLSFNDFDVLPVCKEFGNLTKLTFLGLSA-AKFRQLDLLPVAHL-HLSCILLDLVSYHIKGGETESLQIPNTTVLHLVF 203 (562)
T ss_dssp EECCSSCCSBCCCCGGGGGCTTCCEEEEEC-SBCCTTTTGGGTTS-CEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEE
T ss_pred EECCCCCccccCchHhhcccCcccEEecCC-CccccCchhhhhhc-eeeEEEeecccccccccCcccccccCcceEEEEe
Confidence 999988644423 36788889999999988 44554333333333 449999988877 54444444433211100000
Q ss_pred hhhHHHhhhhhhhhcccCCccEEEccCCCCC----HHHHHHhhcCCCCCeEecCCCcCChhhhHhh---hcCCCccEEEc
Q 009672 213 CSMIIRLFCLHVFLTSLQKLTLLNLEGCPVT----AACLDSLSALGSLFYLNLNRCQLSDDGCEKF---SKIGSLKVLNL 285 (529)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l---~~~~~L~~L~l 285 (529)
.............+..+++|+.++++++... ......+...++|+.+++.++.+.......+ ...++|++|++
T Consensus 204 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l 283 (562)
T 3a79_B 204 HPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNI 283 (562)
T ss_dssp CSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEE
T ss_pred cCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEE
Confidence 0000000011123446688999999987522 1223467788999999998887765433222 23458999999
Q ss_pred cCCCCChHHHHhh-----cCCCCCCEEECCCCCCChhhhhh---hcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEec
Q 009672 286 GFNEITDECLVHL-----KGLTNLESLNLDSCGIGDEGLVN---LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 357 (529)
Q Consensus 286 ~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 357 (529)
++|.+.+..|..+ ..++.|+.+++..+.+ ...... +....+|+.|++++|.+.... ....+++|+.|++
T Consensus 284 ~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l 360 (562)
T 3a79_B 284 YNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNF 360 (562)
T ss_dssp EEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEEC
T ss_pred eccEeeccccchhhhcccccchheehhhccccee-ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEEC
Confidence 9998876566554 4455555555555544 111111 222368999999999875432 1267889999999
Q ss_pred cCCCCChhhhhhhcCCCCCcEEECCCCCCCHH--HHHHHhcCCCCCEEecCCCCCCh-HHHHhhhcCCCCcEEEccCCCC
Q 009672 358 SFTGISDGSLRKLAGLSSLKSLNLDARQITDT--GLAALTSLTGLTHLDLFGARITD-SGAAYLRNFKNLRSLEICGGGL 434 (529)
Q Consensus 358 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~l~~~~l~~-~~~~~~~~~~~L~~L~l~~~~l 434 (529)
++|.+.+..+..+..+++|+.|++++|.++.. .+..++.+++|+.|++++|.++. .+...+..+++|++|++++|.+
T Consensus 361 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l 440 (562)
T 3a79_B 361 TQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNML 440 (562)
T ss_dssp CSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCC
T ss_pred CCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCC
Confidence 99999987788889999999999999999863 24557899999999999999987 5555678899999999999999
Q ss_pred ChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccChhHHHhccCCCCCcEEeecCccCCh
Q 009672 435 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 509 (529)
Q Consensus 435 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 509 (529)
++..+..+. ++|++|++++| .++. +|..+..+++|+.|++++|.++......+..+++|+.|++++|++++
T Consensus 441 ~~~~~~~l~--~~L~~L~L~~N-~l~~-ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c 511 (562)
T 3a79_B 441 TGSVFRCLP--PKVKVLDLHNN-RIMS-IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDC 511 (562)
T ss_dssp CGGGGSSCC--TTCSEEECCSS-CCCC-CCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCC
T ss_pred Ccchhhhhc--CcCCEEECCCC-cCcc-cChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCC
Confidence 876555443 79999999999 7885 44555589999999999999997655558899999999999999875
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-35 Score=291.63 Aligned_cols=363 Identities=18% Similarity=0.205 Sum_probs=241.5
Q ss_pred CCCCEEEcCCCCccchhHHHHHhCCCCCCEEeccCcccc-ccccccccCCCcCcEEeccCCcccCccccccccCCCCCCe
Q 009672 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184 (529)
Q Consensus 106 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 184 (529)
++|++|++++|. ++...+..|.++++|++|++++|... ...+..+..+++|++|++++ +.+....+..+..+++|++
T Consensus 30 ~~l~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~ 107 (455)
T 3v47_A 30 AHVNYVDLSLNS-IAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY-NQFLQLETGAFNGLANLEV 107 (455)
T ss_dssp TTCCEEECCSSC-CCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT-CTTCEECTTTTTTCTTCCE
T ss_pred CccCEEEecCCc-cCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC-CccCccChhhccCcccCCE
Confidence 689999999998 56777888999999999999998643 22346788899999999998 4566666788899999999
Q ss_pred EEccCCCCChhHHHHhhccCccchhhhhhhhHHHhhhhhhhhcccCCccEEEccCCCCCHHHHHH-hhcCCCCCeEecCC
Q 009672 185 LQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDS-LSALGSLFYLNLNR 263 (529)
Q Consensus 185 L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~ 263 (529)
|++++|.+++..+.. ..+..+++|++|++++|.+....+.. +..+++|++|++++
T Consensus 108 L~L~~n~l~~~~~~~------------------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~ 163 (455)
T 3v47_A 108 LTLTQCNLDGAVLSG------------------------NFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTF 163 (455)
T ss_dssp EECTTSCCBTHHHHS------------------------STTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTT
T ss_pred EeCCCCCCCccccCc------------------------ccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCC
Confidence 999999887643332 01334489999999999887765544 77889999999999
Q ss_pred CcCChhhhHhhhcC--CCccEEEccCCCCChHHHHh--------hcCCCCCCEEECCCCCCChhhhhhhcC---CCCCCe
Q 009672 264 CQLSDDGCEKFSKI--GSLKVLNLGFNEITDECLVH--------LKGLTNLESLNLDSCGIGDEGLVNLTG---LCNLKC 330 (529)
Q Consensus 264 ~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~--------~~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~L~~ 330 (529)
|.+....+..+..+ .+|+.++++++.+....+.. +..+++|+.|++++|.+....+..+.. .++|+.
T Consensus 164 n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~ 243 (455)
T 3v47_A 164 NKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQS 243 (455)
T ss_dssp CCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEE
T ss_pred CcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceee
Confidence 98887766666554 68889998888776432221 234578888888888777666555543 377888
Q ss_pred EEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhc--CCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCC
Q 009672 331 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA--GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 408 (529)
Q Consensus 331 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~--~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 408 (529)
|+++++........ .+.+.......+. ..++|+.|++++|.+....+..++.+++|+.|++++|
T Consensus 244 L~l~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 309 (455)
T 3v47_A 244 LILSNSYNMGSSFG--------------HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQN 309 (455)
T ss_dssp EECTTCTTTSCCTT--------------CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTS
T ss_pred Eeeccccccccccc--------------hhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCC
Confidence 88877654322100 0001100011111 1245666666666665554455556666666666666
Q ss_pred CCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccChhHH
Q 009672 409 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488 (529)
Q Consensus 409 ~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 488 (529)
.+++..+..+.++++|++|++++|.+++..+..+..+++|++|++++| .++...+..+..+++|+.|++++|.+.+..+
T Consensus 310 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 388 (455)
T 3v47_A 310 EINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTNQLKSVPD 388 (455)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred cccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCC-cccccChhhccccccccEEECCCCccccCCH
Confidence 666655555566666666666666666555555666666666666666 5555555556666666666666666665554
Q ss_pred HhccCCCCCcEEeecCccCCh
Q 009672 489 RHLKPLKNLRSLTLESCKVTA 509 (529)
Q Consensus 489 ~~~~~~~~L~~L~l~~~~~~~ 509 (529)
..+..+++|++|++++|+++.
T Consensus 389 ~~~~~l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 389 GIFDRLTSLQKIWLHTNPWDC 409 (455)
T ss_dssp TTTTTCTTCCEEECCSSCBCC
T ss_pred hHhccCCcccEEEccCCCccc
Confidence 555666666666666665543
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-35 Score=291.04 Aligned_cols=373 Identities=20% Similarity=0.178 Sum_probs=213.4
Q ss_pred CCceeEEEecCcccCchhhhhccCCCCCCeEeccCCcccCchhhhhccCCCCCCEEEcCCCCccchhHHHHHhCCCCCCE
Q 009672 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135 (529)
Q Consensus 56 ~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 135 (529)
.+++++|+|+++.+++..+..|+++++|++|++++|.......+..|..+++|++|++++|. ++...|..|.++++|++
T Consensus 29 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~ 107 (455)
T 3v47_A 29 PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ-FLQLETGAFNGLANLEV 107 (455)
T ss_dssp CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT-TCEECTTTTTTCTTCCE
T ss_pred CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCc-cCccChhhccCcccCCE
Confidence 36788888888888877777788888888888888743234445677888888888888887 55666777888888888
Q ss_pred EeccCccccccccc--cccCCCcCcEEeccCCcccCcccccc-ccCCCCCCeEEccCCCCChhHHHHhhccCccchhhhh
Q 009672 136 LDLERCTRIHGGLV--NLKGLMKLESLNIKWCNCITDSDMKP-LSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFIL 212 (529)
Q Consensus 136 L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~ 212 (529)
|++++|......+. .+..+++|++|++++| .+.+..+.. +..+++|++|++++|.++......+..+
T Consensus 108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l--------- 177 (455)
T 3v47_A 108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN-NIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNF--------- 177 (455)
T ss_dssp EECTTSCCBTHHHHSSTTTTCTTCCEEECCSS-BCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGG---------
T ss_pred EeCCCCCCCccccCcccccCcccCCEEECCCC-ccCccCcccccCCCCcccEEeCCCCcccccChhhhhcc---------
Confidence 88888754332232 3677788888888774 455444443 6677788888887777765443333222
Q ss_pred hhhHHHhhhhhhhhcccCCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCCh
Q 009672 213 CSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 292 (529)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 292 (529)
...+++.|+++++.+....+..+. ......+..+++|++|++++|.+.+
T Consensus 178 ---------------~~~~L~~L~l~~n~l~~~~~~~~~----------------~~~~~~~~~~~~L~~L~Ls~n~l~~ 226 (455)
T 3v47_A 178 ---------------QGKHFTLLRLSSITLQDMNEYWLG----------------WEKCGNPFKNTSITTLDLSGNGFKE 226 (455)
T ss_dssp ---------------TTCEEEEEECTTCBCTTCSTTCTT----------------HHHHCCTTTTCEEEEEECTTSCCCH
T ss_pred ---------------ccccccccccccCcccccchhhcc----------------ccccccccccceeeeEecCCCcccc
Confidence 014667777777665442211110 0000111223455555555555554
Q ss_pred HHHHhhcC---CCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhcc--CCCCCCeEeccCCCCChhhh
Q 009672 293 ECLVHLKG---LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS--GLTNLESINLSFTGISDGSL 367 (529)
Q Consensus 293 ~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~ 367 (529)
..+..+.. .++++.|++.++....... ....++.+ ....+. ..++|+.+++++|.+....+
T Consensus 227 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~-------------~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 292 (455)
T 3v47_A 227 SMAKRFFDAIAGTKIQSLILSNSYNMGSSF-GHTNFKDP-------------DNFTFKGLEASGVKTCDLSKSKIFALLK 292 (455)
T ss_dssp HHHHHHHHHTTTCCEEEEECTTCTTTSCCT-TCCSSCCC-------------CTTTTGGGTTSCCCEEECCSSCCCEECT
T ss_pred cchhhhhccccccceeeEeecccccccccc-chhhhccC-------------cccccccccccCceEEEecCccccccch
Confidence 44433322 2555555555553221100 00000000 000000 12455555555555555444
Q ss_pred hhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCC
Q 009672 368 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 447 (529)
Q Consensus 368 ~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~ 447 (529)
..++.+++|+.|++++|.+....+..++.+++|+.|++++|.++...+..+.++++|++|++++|.+++..+..+..+++
T Consensus 293 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 372 (455)
T 3v47_A 293 SVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPN 372 (455)
T ss_dssp TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred hhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcccccc
Confidence 45555555555555555555544445555566666666666665555555566666666666666666655555666666
Q ss_pred CCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccCh
Q 009672 448 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 485 (529)
Q Consensus 448 L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~ 485 (529)
|++|++++| .++...+..+..+++|+.|++++|++..
T Consensus 373 L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 373 LKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDC 409 (455)
T ss_dssp CCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ccEEECCCC-ccccCCHhHhccCCcccEEEccCCCccc
Confidence 666666666 5555544555566666666666666554
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-34 Score=282.88 Aligned_cols=400 Identities=25% Similarity=0.313 Sum_probs=245.1
Q ss_pred CCCCeEeccCCcccCchhhhh-ccCCCCCCEEEcCCCCccch----hHHHHHhCCCCCCEEeccCccccccccccc-cCC
Q 009672 81 SNLQSLDFNFCIQISDGGLEH-LRGLSNLTSLSFRRNNAITA----QGMKAFAGLINLVKLDLERCTRIHGGLVNL-KGL 154 (529)
Q Consensus 81 ~~L~~L~l~~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~ 154 (529)
++|+.|+++++ .+.+..... +..+++|++|++++|. ++. .++..+..+++|++|++++|......+..+ ..+
T Consensus 3 ~~l~~L~Ls~~-~l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 80 (461)
T 1z7x_W 3 LDIQSLDIQCE-ELSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL 80 (461)
T ss_dssp EEEEEEEEESC-CCCHHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred ccceehhhhhc-ccCchhHHHHHhhcCCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHH
Confidence 56788888876 466555444 6778888888888887 443 346667777888888888765433333222 222
Q ss_pred C----cCcEEeccCCcccCcc----ccccccCCCCCCeEEccCCCCChhHHHHhhccCccchhhhhhhhHHHhhhhhhhh
Q 009672 155 M----KLESLNIKWCNCITDS----DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFL 226 (529)
Q Consensus 155 ~----~L~~L~l~~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (529)
+ +|++|++++|. +.+. .+..+..+++|++|++++|.+++.+...+... ..
T Consensus 81 ~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~---------------------l~ 138 (461)
T 1z7x_W 81 QTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEG---------------------LL 138 (461)
T ss_dssp CSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHH---------------------HT
T ss_pred hhCCCceeEEEccCCC-CCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHH---------------------Hh
Confidence 2 46666666532 3321 23445555555666665555554443333211 01
Q ss_pred cccCCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhc-----CC
Q 009672 227 TSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK-----GL 301 (529)
Q Consensus 227 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-----~~ 301 (529)
...++|++|++++|.+....... .+..+..+++|++|++++|.+.+..+..+. ..
T Consensus 139 ~~~~~L~~L~L~~n~l~~~~~~~--------------------l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~ 198 (461)
T 1z7x_W 139 DPQCRLEKLQLEYCSLSAASCEP--------------------LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSP 198 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHH--------------------HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSC
T ss_pred cCCCcceEEECCCCCCCHHHHHH--------------------HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCC
Confidence 11234555555555544422111 112223344455555554444333222221 24
Q ss_pred CCCCEEECCCCCCChhh----hhhhcCCCCCCeEEcCCCccChhhhh-----hccCCCCCCeEeccCCCCChhh----hh
Q 009672 302 TNLESLNLDSCGIGDEG----LVNLTGLCNLKCLELSDTQVGSSGLR-----HLSGLTNLESINLSFTGISDGS----LR 368 (529)
Q Consensus 302 ~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~-----~~~~~~~L~~L~l~~~~~~~~~----~~ 368 (529)
++|++|++++|.++... +..+..+++|+.|++++|.+++.... ....+++|+.|++++|.+++.. +.
T Consensus 199 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 278 (461)
T 1z7x_W 199 CQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR 278 (461)
T ss_dssp CCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred CCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHH
Confidence 45566666555554422 33344556666666666665544322 1224677777777777777643 33
Q ss_pred hhcCCCCCcEEECCCCCCCHHHHHHHhc-----CCCCCEEecCCCCCChHH----HHhhhcCCCCcEEEccCCCCChhhh
Q 009672 369 KLAGLSSLKSLNLDARQITDTGLAALTS-----LTGLTHLDLFGARITDSG----AAYLRNFKNLRSLEICGGGLTDAGV 439 (529)
Q Consensus 369 ~l~~~~~L~~L~l~~~~~~~~~~~~l~~-----~~~L~~L~l~~~~l~~~~----~~~~~~~~~L~~L~l~~~~l~~~~~ 439 (529)
.+..+++|++|++++|.+.+.++..+.. .++|+.|++++|.++... +..+..+++|++|++++|.+++.++
T Consensus 279 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~ 358 (461)
T 1z7x_W 279 VLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGV 358 (461)
T ss_dssp HHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHH
T ss_pred HHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccH
Confidence 4556788888888888887665555542 268899999988888653 4556778999999999998888766
Q ss_pred hhccC-----CCCCCeEecCCCCCCCh----hHHHHHhCCCCCCeeeccCCccChhHHHhcc-----CCCCCcEEeecCc
Q 009672 440 KHIKD-----LSSLTLLNLSQNCNLTD----KTLELISGLTGLVSLNVSNSRITSAGLRHLK-----PLKNLRSLTLESC 505 (529)
Q Consensus 440 ~~~~~-----~~~L~~L~l~~~~~l~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~ 505 (529)
..+.. .++|++|++++| .+++ ..+..+..+++|+.|++++|++++.+...+. ...+|+.|++.++
T Consensus 359 ~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~ 437 (461)
T 1z7x_W 359 RELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDI 437 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTC
T ss_pred HHHHHHHcCCCCceEEEECCCC-CCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeeccc
Confidence 65543 679999999999 7886 5677888899999999999999887664442 2456899999888
Q ss_pred cCChh---HHHHhhcCCCCCceec
Q 009672 506 KVTAN---DIKRLQSRDLPNLVSF 526 (529)
Q Consensus 506 ~~~~~---~~~~l~~~~~~~l~~l 526 (529)
.++.. .++.+. +..|+++.+
T Consensus 438 ~~~~~~~~~l~~l~-~~~p~l~i~ 460 (461)
T 1z7x_W 438 YWSEEMEDRLQALE-KDKPSLRVI 460 (461)
T ss_dssp CCCHHHHHHHHHHH-HHCTTSEEE
T ss_pred ccCHHHHHHHHHHh-ccCCCcEee
Confidence 77654 444455 567888754
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-32 Score=275.23 Aligned_cols=358 Identities=25% Similarity=0.334 Sum_probs=233.4
Q ss_pred CCceeEEEecCcccCchhhhh-ccCCCCCCeEeccCCcccCchh----hhhccCCCCCCEEEcCCCCccchhHHHHHh-C
Q 009672 56 GSSLLSVDLSGSDVTDSGLIH-LKDCSNLQSLDFNFCIQISDGG----LEHLRGLSNLTSLSFRRNNAITAQGMKAFA-G 129 (529)
Q Consensus 56 ~~~l~~l~l~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~ 129 (529)
++++++|+++++.+++..... +..+++|++|++++| .+...+ +..+..+++|++|++++|. +++..+..+. .
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~ 79 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQG 79 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHT
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCC-CCCHHHHHHHHHHHHhCCCcCEEeCCCCc-CChHHHHHHHHH
Confidence 467999999999998776655 688999999999998 476543 3456788999999999998 5665555444 4
Q ss_pred CC----CCCEEeccCccccccc----cccccCCCcCcEEeccCCcccCcccccccc-----CCCCCCeEEccCCCCChhH
Q 009672 130 LI----NLVKLDLERCTRIHGG----LVNLKGLMKLESLNIKWCNCITDSDMKPLS-----GLTNLKSLQISCSKVTDSG 196 (529)
Q Consensus 130 ~~----~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~~~~~~ 196 (529)
++ +|++|++++|.....+ +..+..+++|++|++++|. +.+..+..+. ..++|++|++++|.+++..
T Consensus 80 l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 158 (461)
T 1z7x_W 80 LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS 158 (461)
T ss_dssp TCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG
T ss_pred HhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHH
Confidence 66 6999999998655433 4667889999999999854 6554444332 3568999999999998876
Q ss_pred HHHhhccCccchhhhhhhhHHHhhhhhhhhcccCCccEEEccCCCCCHHHHHHhh-----cCCCCCeEecCCCcCChhh-
Q 009672 197 IAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLS-----ALGSLFYLNLNRCQLSDDG- 270 (529)
Q Consensus 197 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~- 270 (529)
...+... +..+++|+.|++++|.+.+..+..+. ..++|+.|++++|.++...
T Consensus 159 ~~~l~~~----------------------l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 216 (461)
T 1z7x_W 159 CEPLASV----------------------LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNC 216 (461)
T ss_dssp HHHHHHH----------------------HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHH
T ss_pred HHHHHHH----------------------HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHH
Confidence 5554332 55569999999999998776555443 2568999999999887643
Q ss_pred ---hHhhhcCCCccEEEccCCCCChHHHH-----hhcCCCCCCEEECCCCCCChhh----hhhhcCCCCCCeEEcCCCcc
Q 009672 271 ---CEKFSKIGSLKVLNLGFNEITDECLV-----HLKGLTNLESLNLDSCGIGDEG----LVNLTGLCNLKCLELSDTQV 338 (529)
Q Consensus 271 ---~~~l~~~~~L~~L~l~~~~~~~~~~~-----~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~ 338 (529)
+..+..+++|++|++++|.+.+.... .+..+++|++|++++|.++... +..+..+++|+.|++++|.+
T Consensus 217 ~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i 296 (461)
T 1z7x_W 217 RDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL 296 (461)
T ss_dssp HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCC
T ss_pred HHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCC
Confidence 45556678888888888877654322 2234677777777777776543 33344566777777777766
Q ss_pred ChhhhhhccC-----CCCCCeEeccCCCCChhh----hhhhcCCCCCcEEECCCCCCCHHHHHHHhc-----CCCCCEEe
Q 009672 339 GSSGLRHLSG-----LTNLESINLSFTGISDGS----LRKLAGLSSLKSLNLDARQITDTGLAALTS-----LTGLTHLD 404 (529)
Q Consensus 339 ~~~~~~~~~~-----~~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~-----~~~L~~L~ 404 (529)
++.....+.. .++|+.|++++|.++... +..+..+++|++|++++|.+.+.++..+.. .++|+.|+
T Consensus 297 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~ 376 (461)
T 1z7x_W 297 GDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLW 376 (461)
T ss_dssp HHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred chHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEE
Confidence 5544333221 245666666666555432 222334455555555555555443333321 34555555
Q ss_pred cCCCCCCh----HHHHhhhcCCCCcEEEccCCCCChhh
Q 009672 405 LFGARITD----SGAAYLRNFKNLRSLEICGGGLTDAG 438 (529)
Q Consensus 405 l~~~~l~~----~~~~~~~~~~~L~~L~l~~~~l~~~~ 438 (529)
+++|.+++ ..+..+..+++|++|++++|++++.+
T Consensus 377 L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~ 414 (461)
T 1z7x_W 377 LADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAG 414 (461)
T ss_dssp CTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHH
T ss_pred CCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHH
Confidence 55555553 22333344455555555555554443
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-34 Score=300.19 Aligned_cols=448 Identities=21% Similarity=0.202 Sum_probs=308.7
Q ss_pred CCceeEEEecCcccCchhhhhccCCCCCCeEeccCCcccCchhhhhccCCCCCCEEEcCCCCccchhHHHHHhCCCCCCE
Q 009672 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135 (529)
Q Consensus 56 ~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 135 (529)
++++++|+|++|.++...+.+|+.+++|++|+|++| .++...+..|+++++|++|+|++|. ++...+..|.++++|++
T Consensus 51 p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~f~~L~~L~~ 128 (635)
T 4g8a_A 51 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQK 128 (635)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CCEECGGGGTTCTTCCE
T ss_pred CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCCc-CCCCCHHHhcCCCCCCE
Confidence 467999999999999888889999999999999998 6888888899999999999999998 66666778999999999
Q ss_pred EeccCccccccccccccCCCcCcEEeccCCcccCccccccccCCCCCCeEEccCCCCChhHHHHhhcc---Cccc-----
Q 009672 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL---SISS----- 207 (529)
Q Consensus 136 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~---~~~~----- 207 (529)
|++++|.........++.+++|++|++++|.......+..+..+++|++|++++|.++......+..+ ....
T Consensus 129 L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~l 208 (635)
T 4g8a_A 129 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 208 (635)
T ss_dssp EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEEC
T ss_pred EECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhc
Confidence 99999865544556789999999999999543333455778899999999999999887654444322 1000
Q ss_pred --hhh--hhh--------------hhHHHhhhhhhhhcccCCccEEEccCCC------CCH-------------------
Q 009672 208 --VIF--ILC--------------SMIIRLFCLHVFLTSLQKLTLLNLEGCP------VTA------------------- 244 (529)
Q Consensus 208 --~~~--~~~--------------~~~~~~~~~~~~~~~~~~L~~L~l~~~~------~~~------------------- 244 (529)
... ... ............+..+..++...+.... +..
T Consensus 209 s~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~ 288 (635)
T 4g8a_A 209 SLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 288 (635)
T ss_dssp TTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEE
T ss_pred ccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhh
Confidence 000 000 0000001111122222333222211000 000
Q ss_pred --------HHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHH-------------------HHh
Q 009672 245 --------ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC-------------------LVH 297 (529)
Q Consensus 245 --------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-------------------~~~ 297 (529)
.....+....+++.+.+.++.+... ..+.....++.|++.++.+.... +..
T Consensus 289 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~ 366 (635)
T 4g8a_A 289 AYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS 366 (635)
T ss_dssp ECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCC
T ss_pred hhhcccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcc
Confidence 0000111122333333333322211 11223334455554444332110 111
Q ss_pred hcCCCCCCEEECCCCCCChh--hhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChh-hhhhhcCCC
Q 009672 298 LKGLTNLESLNLDSCGIGDE--GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG-SLRKLAGLS 374 (529)
Q Consensus 298 ~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~ 374 (529)
...+++|+.++++.+.+... .+..+....+|+.+++..+..... ...+..+++|+.+++..+..... ....+..+.
T Consensus 367 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~-~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~ 445 (635)
T 4g8a_A 367 EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 445 (635)
T ss_dssp CCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEE-CSCCTTCTTCCEEECTTSEEESTTSSCTTTTCT
T ss_pred cccccccccchhhccccccccccccchhhhhhhhhhhccccccccc-cccccccccccchhhhhcccccccccccccccc
Confidence 23467777777777755432 233445567778887777654432 23355678888888887744332 234566788
Q ss_pred CCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCC-hHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEec
Q 009672 375 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT-DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 453 (529)
Q Consensus 375 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~-~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l 453 (529)
+++.++++.|.+....+..+..+++|+.|++++|... ...+..+..+++|++|++++|++++..+..|.++++|++|+|
T Consensus 446 ~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~L 525 (635)
T 4g8a_A 446 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 525 (635)
T ss_dssp TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEEC
Confidence 9999999999888776677778899999999999644 345667889999999999999999988889999999999999
Q ss_pred CCCCCCChhHHHHHhCCCCCCeeeccCCccChhHHHhccCC-CCCcEEeecCccCCh
Q 009672 454 SQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL-KNLRSLTLESCKVTA 509 (529)
Q Consensus 454 ~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~ 509 (529)
++| .++...+..+..+++|+.|++++|.+.+..+..+..+ ++|++|++++|++++
T Consensus 526 s~N-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 526 SHN-NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp TTS-CCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred CCC-cCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 999 8998888889999999999999999999888888887 689999999999875
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-33 Score=284.70 Aligned_cols=470 Identities=21% Similarity=0.244 Sum_probs=290.1
Q ss_pred CCcHHHHHHHHHHhhhcccCChhhhhhhccCccceeccCCCCCCCHHHHHHHHhcCCceeEEEecCcccCchhhhhccCC
Q 009672 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDC 80 (529)
Q Consensus 1 ~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~ 80 (529)
.||.|++..||.++....-. . .+ ..++..|...... ..+.+++.+.... .....+.++
T Consensus 8 ~LPdevL~~If~~L~~~~d~-----~---~~----------s~vck~W~~~~~~---~~~~l~~~~~~~~-~~~~~~~~~ 65 (594)
T 2p1m_B 8 SFPEEVLEHVFSFIQLDKDR-----N---SV----------SLVCKSWYEIERW---CRRKVFIGNCYAV-SPATVIRRF 65 (594)
T ss_dssp --CHHHHHHHHHTCCCHHHH-----H---HH----------HTSCHHHHHHHHH---HCCEEEESSTTSS-CHHHHHHHC
T ss_pred hCCHHHHHHHHhhcCCchhH-----H---HH----------HHHHHHHHHhhhh---hceEEeecccccc-CHHHHHhhC
Confidence 37999999999987621100 0 00 1123444443111 1334444443221 122234556
Q ss_pred CCCCeEeccCCcccCchh--------------hhhccCCCCCCEEEcCCCCccchhHHHHHh-CCCCCCEEeccCccccc
Q 009672 81 SNLQSLDFNFCIQISDGG--------------LEHLRGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRIH 145 (529)
Q Consensus 81 ~~L~~L~l~~~~~~~~~~--------------~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~ 145 (529)
++|+.|++++|..+.+.. ......+++|++|++++|. +++..+..+. .+++|++|++++|..+.
T Consensus 66 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~~~~ 144 (594)
T 2p1m_B 66 PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV-VTDDCLELIAKSFKNFKVLVLSSCEGFS 144 (594)
T ss_dssp TTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHHHHHHHHCTTCCEEEEESCEEEE
T ss_pred CCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcE-EcHHHHHHHHHhCCCCcEEeCCCcCCCC
Confidence 666666666654332211 1122456777777777776 5566665555 57777777777774333
Q ss_pred c-cc-ccccCCCcCcEEeccCCcccCccccccc----cCCCCCCeEEccCCC--CChhHHHHhhccCccchhhhhhhhHH
Q 009672 146 G-GL-VNLKGLMKLESLNIKWCNCITDSDMKPL----SGLTNLKSLQISCSK--VTDSGIAYLKGLSISSVIFILCSMII 217 (529)
Q Consensus 146 ~-~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~l----~~~~~L~~L~l~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~ 217 (529)
. .. .....+++|++|++++|. +++.....+ ..+++|++|+++++. ++......+
T Consensus 145 ~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l----------------- 206 (594)
T 2p1m_B 145 TDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERL----------------- 206 (594)
T ss_dssp HHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHH-----------------
T ss_pred HHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHH-----------------
Confidence 2 12 223467777777777754 443332222 256788888887765 332222222
Q ss_pred HhhhhhhhhcccCCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcC--Ch----hhhHhhhcCCCccEE-EccCCCC
Q 009672 218 RLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL--SD----DGCEKFSKIGSLKVL-NLGFNEI 290 (529)
Q Consensus 218 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~--~~----~~~~~l~~~~~L~~L-~l~~~~~ 290 (529)
+..+++|+.|++++|......+..+..+++|+.|++..+.. .. ..+..+..+++|+.+ .+.....
T Consensus 207 --------~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~ 278 (594)
T 2p1m_B 207 --------VTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVP 278 (594)
T ss_dssp --------HHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCG
T ss_pred --------HHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccch
Confidence 23347888888887744344566667778888888665431 11 122355677788887 3333221
Q ss_pred ChHHHHhhcCCCCCCEEECCCCCCChhhhhh-hcCCCCCCeEEcCCCccChhhhhhc-cCCCCCCeEecc---------C
Q 009672 291 TDECLVHLKGLTNLESLNLDSCGIGDEGLVN-LTGLCNLKCLELSDTQVGSSGLRHL-SGLTNLESINLS---------F 359 (529)
Q Consensus 291 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~---------~ 359 (529)
...+..+..+++|++|++++|.+....... +..+++|+.|++.+| +++.....+ ..+++|+.|++. .
T Consensus 279 -~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~ 356 (594)
T 2p1m_B 279 -AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPN 356 (594)
T ss_dssp -GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCS
T ss_pred -hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccC
Confidence 223333445778888888888766543332 456788888888877 443333323 347888888873 3
Q ss_pred CCCChhhhhhhc-CCCCCcEEECCCCCCCHHHHHHHh-cCCCCCEEecC--C----CCCC----h-HHHHhhhcCCCCcE
Q 009672 360 TGISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLF--G----ARIT----D-SGAAYLRNFKNLRS 426 (529)
Q Consensus 360 ~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~--~----~~l~----~-~~~~~~~~~~~L~~ 426 (529)
+.+++.....+. .+++|+.|.+.++.+++.....+. .+++|+.|++. + +.++ + .....+.++++|++
T Consensus 357 ~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~ 436 (594)
T 2p1m_B 357 VALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRR 436 (594)
T ss_dssp SCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCE
T ss_pred CCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccE
Confidence 456665555554 478888888888888887666665 58889988888 3 4555 2 22334577889999
Q ss_pred EEccCCCCChhhhhhccC-CCCCCeEecCCCCCCChhHHHHH-hCCCCCCeeeccCCccChhHHH-hccCCCCCcEEeec
Q 009672 427 LEICGGGLTDAGVKHIKD-LSSLTLLNLSQNCNLTDKTLELI-SGLTGLVSLNVSNSRITSAGLR-HLKPLKNLRSLTLE 503 (529)
Q Consensus 427 L~l~~~~l~~~~~~~~~~-~~~L~~L~l~~~~~l~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~ 503 (529)
|++++ .+++.++..+.. +++|++|++++| .+++..+..+ ..+++|+.|++++|++++.+.. .+..+++|++|+++
T Consensus 437 L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~ 514 (594)
T 2p1m_B 437 LSLSG-LLTDKVFEYIGTYAKKMEMLSVAFA-GDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMS 514 (594)
T ss_dssp EECCS-SCCHHHHHHHHHHCTTCCEEEEESC-CSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEE
T ss_pred EeecC-cccHHHHHHHHHhchhccEeeccCC-CCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeee
Confidence 99977 777777776665 788999999888 6777666655 5688999999999988766664 34557889999999
Q ss_pred CccCChhHHHHhhcCCCCCce
Q 009672 504 SCKVTANDIKRLQSRDLPNLV 524 (529)
Q Consensus 504 ~~~~~~~~~~~l~~~~~~~l~ 524 (529)
+|+++..+++.+. ..+|+++
T Consensus 515 ~~~~~~~~~~~l~-~~lp~l~ 534 (594)
T 2p1m_B 515 SCSVSFGACKLLG-QKMPKLN 534 (594)
T ss_dssp SSCCBHHHHHHHH-HHCTTEE
T ss_pred CCCCCHHHHHHHH-HhCCCCE
Confidence 9988888888775 5677774
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-33 Score=289.29 Aligned_cols=472 Identities=18% Similarity=0.188 Sum_probs=332.3
Q ss_pred CcHHHHHHHHHHhh-hcccCChhhhhhhccCccceeccCCCCCCCHHHHHHHHhcCCceeEEEecCcccCchhhhhccCC
Q 009672 2 LPRDISQQIFNELV-YSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDC 80 (529)
Q Consensus 2 l~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~ 80 (529)
||.|++..|+.++. .+. ... +..++..|........ +.+.+.+. ........+.++
T Consensus 16 LPdeil~~I~~~L~~~~d---------~~~----------~s~vck~W~~~~~~~~---~~l~~~~~-~~~~~~~~~~~~ 72 (592)
T 3ogk_B 16 TVDDVIEQVMTYITDPKD---------RDS----------ASLVCRRWFKIDSETR---EHVTMALC-YTATPDRLSRRF 72 (592)
T ss_dssp CGGGTHHHHHTTCCCHHH---------HHH----------HTTSCHHHHHHHHHHC---CEEEESCG-GGSCHHHHHHHC
T ss_pred CCHHHHHHHHHhcCCHHH---------HHH----------HHHHhHHHHHhhhccc---cEEEEeec-cccChHHHHHhC
Confidence 79999999998872 110 001 1123556655543322 23333332 222333445677
Q ss_pred CCCCeEeccCCcccCch--------------hhhhccCCCCCCEEEcCCCCccchhHHHHHhC-CCC-CCEEeccCcccc
Q 009672 81 SNLQSLDFNFCIQISDG--------------GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAG-LIN-LVKLDLERCTRI 144 (529)
Q Consensus 81 ~~L~~L~l~~~~~~~~~--------------~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~~-L~~L~l~~~~~~ 144 (529)
++|+.|++++|..+.+. .......+++|++|++++|. +++..+..+.. +++ |++|++++|...
T Consensus 73 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~L~~L~L~~~~~~ 151 (592)
T 3ogk_B 73 PNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMI-VSDLDLDRLAKARADDLETLKLDKCSGF 151 (592)
T ss_dssp TTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHHHHHHHHHGGGCCEEEEESCEEE
T ss_pred CCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccE-ecHHHHHHHHHhccccCcEEECcCCCCc
Confidence 88888888776433211 11122378999999999986 67777777765 445 999999988633
Q ss_pred cc-cc-ccccCCCcCcEEeccCCcccCccc----cccccCCCCCCeEEccCCCCChhHHHHhhccCccchhhhhhhhHHH
Q 009672 145 HG-GL-VNLKGLMKLESLNIKWCNCITDSD----MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIR 218 (529)
Q Consensus 145 ~~-~~-~~~~~~~~L~~L~l~~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 218 (529)
.. .. .....+++|++|++++|. +.+.. ...+..+++|++|+++++.++......+..+
T Consensus 152 ~~~~l~~~~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~--------------- 215 (592)
T 3ogk_B 152 TTDGLLSIVTHCRKIKTLLMEESS-FSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETI--------------- 215 (592)
T ss_dssp EHHHHHHHHHHCTTCSEEECTTCE-EECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHH---------------
T ss_pred CHHHHHHHHhhCCCCCEEECcccc-ccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHH---------------
Confidence 22 12 223578999999999864 33332 1234578999999999998874333333322
Q ss_pred hhhhhhhhcccCCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCC---hhhhHhhhcCCCccEEEccCCCCChHHH
Q 009672 219 LFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS---DDGCEKFSKIGSLKVLNLGFNEITDECL 295 (529)
Q Consensus 219 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~---~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 295 (529)
+.++++|+.|++++|.+.. .+..+..+++|+.++++..... ......+..+++|+.++++++.. ...+
T Consensus 216 -------~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~ 286 (592)
T 3ogk_B 216 -------ARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMP 286 (592)
T ss_dssp -------HHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGG
T ss_pred -------HhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHH
Confidence 4556999999999998876 4577888999999999853322 11223455778999999987533 2456
Q ss_pred HhhcCCCCCCEEECCCCCCChhhh-hhhcCCCCCCeEEcCCCccChhhh-hhccCCCCCCeEeccC-----------CCC
Q 009672 296 VHLKGLTNLESLNLDSCGIGDEGL-VNLTGLCNLKCLELSDTQVGSSGL-RHLSGLTNLESINLSF-----------TGI 362 (529)
Q Consensus 296 ~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~-----------~~~ 362 (529)
..+..+++|++|++++|.+..... ..+..+++|+.|++. +.+.+... .....+++|+.|++++ +.+
T Consensus 287 ~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~ 365 (592)
T 3ogk_B 287 ILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLV 365 (592)
T ss_dssp GGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCC
T ss_pred HHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCcc
Confidence 667788999999999998765544 346789999999998 44544443 3346789999999993 567
Q ss_pred Chhhhhh-hcCCCCCcEEECCCCCCCHHHHHHHhc-CCCCCEEecC----CCCCChH-----HHHhhhcCCCCcEEEccC
Q 009672 363 SDGSLRK-LAGLSSLKSLNLDARQITDTGLAALTS-LTGLTHLDLF----GARITDS-----GAAYLRNFKNLRSLEICG 431 (529)
Q Consensus 363 ~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~l~~-~~~L~~L~l~----~~~l~~~-----~~~~~~~~~~L~~L~l~~ 431 (529)
++..... ...+++|+.|++..+.+++..+..++. +++|+.|+++ .+.+++. ....+.++++|++|++++
T Consensus 366 ~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~ 445 (592)
T 3ogk_B 366 SQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYL 445 (592)
T ss_dssp CHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEEC
T ss_pred CHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEec
Confidence 6654444 346899999999889999887777775 9999999996 5567652 344567899999999976
Q ss_pred CC--CChhhhhhccC-CCCCCeEecCCCCCCChhH-HHHHhCCCCCCeeeccCCccChhHHHh-ccCCCCCcEEeecCcc
Q 009672 432 GG--LTDAGVKHIKD-LSSLTLLNLSQNCNLTDKT-LELISGLTGLVSLNVSNSRITSAGLRH-LKPLKNLRSLTLESCK 506 (529)
Q Consensus 432 ~~--l~~~~~~~~~~-~~~L~~L~l~~~~~l~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~ 506 (529)
|. +++.....+.. +++|++|++++| .+++.. +..+.++++|+.|++++|++++..... +..+++|++|++++|+
T Consensus 446 ~~~~l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 446 RQGGLTDLGLSYIGQYSPNVRWMLLGYV-GESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp CGGGCCHHHHHHHHHSCTTCCEEEECSC-CSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred CCCCccHHHHHHHHHhCccceEeeccCC-CCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence 43 77777776654 899999999999 788744 456678999999999999988765543 4678999999999999
Q ss_pred CChhHHHHhhcCCCCCcee
Q 009672 507 VTANDIKRLQSRDLPNLVS 525 (529)
Q Consensus 507 ~~~~~~~~l~~~~~~~l~~ 525 (529)
++..+++.+. +.+|.++.
T Consensus 525 it~~~~~~l~-~~~p~l~~ 542 (592)
T 3ogk_B 525 ASMTGQDLMQ-MARPYWNI 542 (592)
T ss_dssp CCTTCTTGGG-GCCTTEEE
T ss_pred CCHHHHHHHH-HhCCCcEE
Confidence 9999888887 77887764
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-34 Score=295.02 Aligned_cols=428 Identities=21% Similarity=0.162 Sum_probs=297.9
Q ss_pred cCCceeEEEecCcccCchhhhhccCCCCCCeEeccCCcccCchhhhhccCCCCCCEEEcCCCCccchhHHHHHhCCCCCC
Q 009672 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134 (529)
Q Consensus 55 ~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 134 (529)
.+...+++++++++++. .+..+ .++|++|++++| .+....+..|..+++|++|++++|. ++...|..|.++++|+
T Consensus 29 ~~~~~~~l~ls~~~L~~-ip~~~--~~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~ 103 (562)
T 3a79_B 29 SNELESMVDYSNRNLTH-VPKDL--PPRTKALSLSQN-SISELRMPDISFLSELRVLRLSHNR-IRSLDFHVFLFNQDLE 103 (562)
T ss_dssp ----CCEEECTTSCCCS-CCTTS--CTTCCEEECCSS-CCCCCCGGGTTTCTTCCEEECCSCC-CCEECTTTTTTCTTCC
T ss_pred ccCCCcEEEcCCCCCcc-CCCCC--CCCcCEEECCCC-CccccChhhhccCCCccEEECCCCC-CCcCCHHHhCCCCCCC
Confidence 45556999999999986 33333 389999999998 6888877899999999999999998 6777788899999999
Q ss_pred EEeccCccccccccccccCCCcCcEEeccCCcccCc-cccccccCCCCCCeEEccCCCCChhHHHHhhccCccchhhhhh
Q 009672 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD-SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILC 213 (529)
Q Consensus 135 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~ 213 (529)
+|++++|... ..+.. .+++|++|++++| .+.. ..+..++++++|++|++++|.++... +..+
T Consensus 104 ~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N-~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~---~~~l---------- 166 (562)
T 3a79_B 104 YLDVSHNRLQ-NISCC--PMASLRHLDLSFN-DFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD---LLPV---------- 166 (562)
T ss_dssp EEECTTSCCC-EECSC--CCTTCSEEECCSS-CCSBCCCCGGGGGCTTCCEEEEECSBCCTTT---TGGG----------
T ss_pred EEECCCCcCC-ccCcc--ccccCCEEECCCC-CccccCchHhhcccCcccEEecCCCccccCc---hhhh----------
Confidence 9999998643 43333 7899999999995 4554 33578999999999999999987632 2222
Q ss_pred hhHHHhhhhhhhhcccCCc--cEEEccCCCC--CHHHHHHhhc--------------------------CCCCCeEecCC
Q 009672 214 SMIIRLFCLHVFLTSLQKL--TLLNLEGCPV--TAACLDSLSA--------------------------LGSLFYLNLNR 263 (529)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~L--~~L~l~~~~~--~~~~~~~~~~--------------------------~~~L~~L~l~~ 263 (529)
++| +.|++++|.+ ....+..+.. +++|+.+++++
T Consensus 167 ----------------~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~ 230 (562)
T 3a79_B 167 ----------------AHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKL 230 (562)
T ss_dssp ----------------TTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEEC
T ss_pred ----------------hhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccc
Confidence 444 8888887766 4333333332 34555555555
Q ss_pred CcCC----hhhhHhhhcCCCccEEEccCCCCChHHHHh---hcCCCCCCEEECCCCCCChhhhhhh-----cCCCCCCeE
Q 009672 264 CQLS----DDGCEKFSKIGSLKVLNLGFNEITDECLVH---LKGLTNLESLNLDSCGIGDEGLVNL-----TGLCNLKCL 331 (529)
Q Consensus 264 ~~~~----~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L 331 (529)
|... ......+...+.|+.+++.++.+.+..... ....++|++|++++|.+....+..+ ..++.|+.+
T Consensus 231 n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~ 310 (562)
T 3a79_B 231 NDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIE 310 (562)
T ss_dssp CSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEE
T ss_pred cccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehh
Confidence 4311 111233445566666666555544322111 1123467777777665543333333 333344444
Q ss_pred EcCCCccCh--hhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCC
Q 009672 332 ELSDTQVGS--SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 409 (529)
Q Consensus 332 ~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 409 (529)
++..+.+.- .....+-...+|+.+++++|.+.... ....+++|++|++++|.+.+..+..++.+++|+.|++++|+
T Consensus 311 ~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 388 (562)
T 3a79_B 311 HVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG 388 (562)
T ss_dssp EEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSC
T ss_pred hcccceeecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCC
Confidence 444443310 11111112256899999988776432 12578899999999999998667778899999999999999
Q ss_pred CChH--HHHhhhcCCCCcEEEccCCCCCh-hhhhhccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccChh
Q 009672 410 ITDS--GAAYLRNFKNLRSLEICGGGLTD-AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 486 (529)
Q Consensus 410 l~~~--~~~~~~~~~~L~~L~l~~~~l~~-~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~ 486 (529)
++.. .+..+.++++|++|++++|.++. .....+..+++|++|++++| .++...+..+. ++|+.|++++|.+...
T Consensus 389 l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~--~~L~~L~L~~N~l~~i 465 (562)
T 3a79_B 389 LKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSN-MLTGSVFRCLP--PKVKVLDLHNNRIMSI 465 (562)
T ss_dssp CCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSS-CCCGGGGSSCC--TTCSEEECCSSCCCCC
T ss_pred cCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCC-CCCcchhhhhc--CcCCEEECCCCcCccc
Confidence 9974 35678899999999999999987 44445778899999999999 78765543332 6999999999999864
Q ss_pred HHHhccCCCCCcEEeecCccCChhHHHHhhcCCCCCceecCC
Q 009672 487 GLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRP 528 (529)
Q Consensus 487 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~l~~l~~ 528 (529)
.. .+..+++|++|++++|+++..+...+. .+++|+.+++
T Consensus 466 p~-~~~~l~~L~~L~L~~N~l~~l~~~~~~--~l~~L~~L~l 504 (562)
T 3a79_B 466 PK-DVTHLQALQELNVASNQLKSVPDGVFD--RLTSLQYIWL 504 (562)
T ss_dssp CT-TTTSSCCCSEEECCSSCCCCCCTTSTT--TCTTCCCEEC
T ss_pred Ch-hhcCCCCCCEEECCCCCCCCCCHHHHh--cCCCCCEEEe
Confidence 43 445899999999999999864433233 6788887765
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-32 Score=269.35 Aligned_cols=344 Identities=28% Similarity=0.375 Sum_probs=188.6
Q ss_pred CceeEEEecCcccCchhhhhccCCCCCCeEeccCCcccCchhhhhccCCCCCCEEEcCCCCccchhHHHHHhCCCCCCEE
Q 009672 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136 (529)
Q Consensus 57 ~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 136 (529)
+++++|+++++.++.. +.+..+++|++|++++| .+....+ +..+++|++|++++|. ++...+ +.++++|++|
T Consensus 46 ~~l~~L~l~~~~i~~l--~~~~~l~~L~~L~Ls~n-~l~~~~~--~~~l~~L~~L~l~~n~-l~~~~~--~~~l~~L~~L 117 (466)
T 1o6v_A 46 DQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNN-QLTDITP--LKNLTKLVDILMNNNQ-IADITP--LANLTNLTGL 117 (466)
T ss_dssp HTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSC-CCCCGG--GTTCTTCCEE
T ss_pred ccccEEecCCCCCccC--cchhhhcCCCEEECCCC-ccCCchh--hhccccCCEEECCCCc-cccChh--hcCCCCCCEE
Confidence 4577777777766532 23666777777777776 4554432 6777777777777776 333333 6667777777
Q ss_pred eccCccccccccccccCCCcCcEEeccCCcccCccccccccCCCCCCeEEccCCCCChhHHHHhhccCccchhhhhhhhH
Q 009672 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMI 216 (529)
Q Consensus 137 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 216 (529)
++++|... ..+ .+..+++|++|++++|. +.+ ...+..+++|++|++.. .+.... .
T Consensus 118 ~L~~n~l~-~~~-~~~~l~~L~~L~l~~n~-l~~--~~~~~~l~~L~~L~l~~-~~~~~~--~----------------- 172 (466)
T 1o6v_A 118 TLFNNQIT-DID-PLKNLTNLNRLELSSNT-ISD--ISALSGLTSLQQLSFGN-QVTDLK--P----------------- 172 (466)
T ss_dssp ECCSSCCC-CCG-GGTTCTTCSEEEEEEEE-ECC--CGGGTTCTTCSEEEEEE-SCCCCG--G-----------------
T ss_pred ECCCCCCC-CCh-HHcCCCCCCEEECCCCc-cCC--ChhhccCCcccEeecCC-cccCch--h-----------------
Confidence 77766322 221 25666666666666532 332 12355566666666642 222110 0
Q ss_pred HHhhhhhhhhcccCCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHH
Q 009672 217 IRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 296 (529)
Q Consensus 217 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 296 (529)
+..+++|+.|++++|.+... ..+..+++|+.|++++|.+....+ +..
T Consensus 173 ---------~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~-------------------- 219 (466)
T 1o6v_A 173 ---------LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGI-------------------- 219 (466)
T ss_dssp ---------GTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGG--------------------
T ss_pred ---------hccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccc--------------------
Confidence 12235555555555554432 224444555555555554443322 333
Q ss_pred hhcCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCC
Q 009672 297 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 376 (529)
Q Consensus 297 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 376 (529)
+++|+.|++++|.+... ..+..+++|+.|++++|.+....+ +..+++|+.|++++|.+....+ +..+++|
T Consensus 220 ----l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L 289 (466)
T 1o6v_A 220 ----LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTAL 289 (466)
T ss_dssp ----CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTC
T ss_pred ----cCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCcc
Confidence 44444444444444332 233445555555555555443322 4455555555555555554332 4555666
Q ss_pred cEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCC
Q 009672 377 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 456 (529)
Q Consensus 377 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~ 456 (529)
+.|++++|.+....+ ++.+++|+.|++++|.+++..+ +..+++|++|++++|.+++. ..+..+++|++|++++|
T Consensus 290 ~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n 363 (466)
T 1o6v_A 290 TNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHN 363 (466)
T ss_dssp SEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSS
T ss_pred CeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCC
Confidence 666666666555322 5566666666666666665543 45666666666666666654 34556666666666666
Q ss_pred CCCChhHHHHHhCCCCCCeeeccCCccCh
Q 009672 457 CNLTDKTLELISGLTGLVSLNVSNSRITS 485 (529)
Q Consensus 457 ~~l~~~~~~~l~~l~~L~~L~l~~~~~~~ 485 (529)
.+++..+ +..+++|+.|++++|++++
T Consensus 364 -~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 364 -QISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp -CCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred -ccCccch--hhcCCCCCEEeccCCcccC
Confidence 5555544 5666667777776666655
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-31 Score=263.84 Aligned_cols=342 Identities=31% Similarity=0.375 Sum_probs=260.4
Q ss_pred cceeccCCCCCCCHHHHHHHHhcCCceeEEEecCcccCchhhhhccCCCCCCeEeccCCcccCchhhhhccCCCCCCEEE
Q 009672 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS 112 (529)
Q Consensus 33 l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 112 (529)
++.+.+..+.-..- .. ...++++++|+++++.+++..+ ++.+++|+.|++++| .+....+ +..+++|++|+
T Consensus 48 l~~L~l~~~~i~~l---~~-~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~ 118 (466)
T 1o6v_A 48 VTTLQADRLGIKSI---DG-VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNN-QIADITP--LANLTNLTGLT 118 (466)
T ss_dssp CCEEECCSSCCCCC---TT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEE
T ss_pred ccEEecCCCCCccC---cc-hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCC-ccccChh--hcCCCCCCEEE
Confidence 56666655431110 11 3457899999999999986654 899999999999998 5666543 89999999999
Q ss_pred cCCCCccchhHHHHHhCCCCCCEEeccCccccccccccccCCCcCcEEeccCCcccCccccccccCCCCCCeEEccCCCC
Q 009672 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKV 192 (529)
Q Consensus 113 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 192 (529)
+++|. ++...+ +.++++|++|++++|... . ...+..+++|++|++++ .+.. ...+..+++|++|++++|.+
T Consensus 119 L~~n~-l~~~~~--~~~l~~L~~L~l~~n~l~-~-~~~~~~l~~L~~L~l~~--~~~~--~~~~~~l~~L~~L~l~~n~l 189 (466)
T 1o6v_A 119 LFNNQ-ITDIDP--LKNLTNLNRLELSSNTIS-D-ISALSGLTSLQQLSFGN--QVTD--LKPLANLTTLERLDISSNKV 189 (466)
T ss_dssp CCSSC-CCCCGG--GTTCTTCSEEEEEEEEEC-C-CGGGTTCTTCSEEEEEE--SCCC--CGGGTTCTTCCEEECCSSCC
T ss_pred CCCCC-CCCChH--HcCCCCCCEEECCCCccC-C-ChhhccCCcccEeecCC--cccC--chhhccCCCCCEEECcCCcC
Confidence 99998 454433 889999999999998533 2 34588999999999974 3332 23488999999999999988
Q ss_pred ChhHHHHhhccCccchhhhhhhhHHHhhhhhhhhcccCCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhH
Q 009672 193 TDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 272 (529)
Q Consensus 193 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 272 (529)
++.. .+ ..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+... .
T Consensus 190 ~~~~--~l--------------------------~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~ 237 (466)
T 1o6v_A 190 SDIS--VL--------------------------AKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--G 237 (466)
T ss_dssp CCCG--GG--------------------------GGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--G
T ss_pred CCCh--hh--------------------------ccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--h
Confidence 7632 23 344999999999999887543 77899999999999998764 4
Q ss_pred hhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCC
Q 009672 273 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 352 (529)
Q Consensus 273 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 352 (529)
.+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+....+ +..+++|+.|++++|.+....+ +..+++|
T Consensus 238 ~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L 311 (466)
T 1o6v_A 238 TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNL 311 (466)
T ss_dssp GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTC
T ss_pred hhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCC
Confidence 57788999999999998876443 7788899999999887776443 6778888888888888766543 5677888
Q ss_pred CeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCC
Q 009672 353 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 432 (529)
Q Consensus 353 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~ 432 (529)
+.|++++|.+.+..+ +..+++|+.|++++|.+.+. ..++.+++|+.|++++|++++..+ +..+++|+.|++++|
T Consensus 312 ~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n 385 (466)
T 1o6v_A 312 TYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 385 (466)
T ss_dssp SEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCE
T ss_pred CEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCC
Confidence 888888887776544 56777788888888777764 356677777777777777776655 667777777777777
Q ss_pred CCCh
Q 009672 433 GLTD 436 (529)
Q Consensus 433 ~l~~ 436 (529)
.++.
T Consensus 386 ~~~~ 389 (466)
T 1o6v_A 386 AWTN 389 (466)
T ss_dssp EEEC
T ss_pred cccC
Confidence 6655
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-31 Score=251.93 Aligned_cols=307 Identities=27% Similarity=0.359 Sum_probs=231.3
Q ss_pred cCCCcCcEEeccCCcccCccccccccCCCCCCeEEccCCCCChhHHHHhhccCccchhhhhhhhHHHhhhhhhhhcccCC
Q 009672 152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQK 231 (529)
Q Consensus 152 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (529)
..+++|++|+++++. +.. .+.+..+++|++|++++|.+++... +..+ ++
T Consensus 41 ~~l~~L~~L~l~~~~-i~~--~~~~~~~~~L~~L~l~~n~i~~~~~--~~~l--------------------------~~ 89 (347)
T 4fmz_A 41 EELESITKLVVAGEK-VAS--IQGIEYLTNLEYLNLNGNQITDISP--LSNL--------------------------VK 89 (347)
T ss_dssp HHHTTCSEEECCSSC-CCC--CTTGGGCTTCCEEECCSSCCCCCGG--GTTC--------------------------TT
T ss_pred hhcccccEEEEeCCc-ccc--chhhhhcCCccEEEccCCccccchh--hhcC--------------------------Cc
Confidence 455677777776633 332 2346667777777777777665332 3333 77
Q ss_pred ccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEECCC
Q 009672 232 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 311 (529)
Q Consensus 232 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 311 (529)
|++|++++|.+... +.+..+++|++|++++|.+....+ +..+++|++|++++|...... ..+..+++|++|++.+
T Consensus 90 L~~L~L~~n~i~~~--~~~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~ 164 (347)
T 4fmz_A 90 LTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTE 164 (347)
T ss_dssp CCEEECCSSCCCCC--GGGTTCTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCS
T ss_pred CCEEEccCCcccCc--hHHcCCCcCCEEECcCCcccCchh--hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecC
Confidence 77777777776653 356777788888888877765433 667778888888877443322 2377788888888888
Q ss_pred CCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHH
Q 009672 312 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 391 (529)
Q Consensus 312 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 391 (529)
|.+..... +..+++|+.|++++|.+..... +..+++|+.+++++|.+..... +..+++|++|++++|.+....+
T Consensus 165 ~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~ 238 (347)
T 4fmz_A 165 SKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP 238 (347)
T ss_dssp SCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG
T ss_pred CCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc
Confidence 87665433 6778888888888888766543 6778889999999888876544 7778899999999998887643
Q ss_pred HHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhCCC
Q 009672 392 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 471 (529)
Q Consensus 392 ~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~ 471 (529)
+..+++|+.|++++|.++.. ..+..+++|++|++++|.+++. ..+..+++|++|++++| .++...+..+..++
T Consensus 239 --~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~ 311 (347)
T 4fmz_A 239 --LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNN-QLGNEDMEVIGGLT 311 (347)
T ss_dssp --GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSS-CCCGGGHHHHHTCT
T ss_pred --hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCC-cCCCcChhHhhccc
Confidence 77889999999999988875 3578899999999999998875 45778899999999999 88888889999999
Q ss_pred CCCeeeccCCccChhHHHhccCCCCCcEEeecCccCCh
Q 009672 472 GLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 509 (529)
Q Consensus 472 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 509 (529)
+|+.|++++|++++..+ +..+++|++|++++|++++
T Consensus 312 ~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~~ 347 (347)
T 4fmz_A 312 NLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIKK 347 (347)
T ss_dssp TCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC----
T ss_pred cCCEEEccCCccccccC--hhhhhccceeehhhhcccC
Confidence 99999999999988655 7789999999999998863
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-32 Score=273.17 Aligned_cols=302 Identities=20% Similarity=0.233 Sum_probs=227.6
Q ss_pred CcCcEEeccCCcccCccccccccCCCCCCeEEccCCCCChhHHHHhhccCccchhhhhhhhHHHhhhhhhhhcccCCccE
Q 009672 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTL 234 (529)
Q Consensus 155 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 234 (529)
+.+++|++++ +.+....+..+..+++|++|++++|.++...+..+..+ ++|++
T Consensus 32 ~~l~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l--------------------------~~L~~ 84 (477)
T 2id5_A 32 TETRLLDLGK-NRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNL--------------------------FNLRT 84 (477)
T ss_dssp TTCSEEECCS-SCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTC--------------------------TTCCE
T ss_pred CCCcEEECCC-CccceECHhHccCCCCCCEEECCCCccCEeChhhhhCC--------------------------ccCCE
Confidence 5788888888 55666666778888888888888888776554444444 88888
Q ss_pred EEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEECCCCCC
Q 009672 235 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 314 (529)
Q Consensus 235 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 314 (529)
|++++|.+....+..|.++++|+.|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++.+|.+
T Consensus 85 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 164 (477)
T 2id5_A 85 LGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL 164 (477)
T ss_dssp EECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCC
T ss_pred EECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcC
Confidence 88888887766555677788888888888888776666777788888888888877766566677788888888888877
Q ss_pred ChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHH
Q 009672 315 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 394 (529)
Q Consensus 315 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l 394 (529)
.......+..+++|+.|++++|.+.......+..+++|+.|++++|......+.......+|+.|++++|.+...+...+
T Consensus 165 ~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 244 (477)
T 2id5_A 165 TSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAV 244 (477)
T ss_dssp SSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHH
T ss_pred cccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHh
Confidence 77666677778888888888887777666667777888888888775544333333344578888888887777666677
Q ss_pred hcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhCCCCCC
Q 009672 395 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 474 (529)
Q Consensus 395 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~ 474 (529)
..+++|+.|++++|.++...+..+..+++|++|++++|.+....+..+.++++|++|++++| .++...+..+..+++|+
T Consensus 245 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~ 323 (477)
T 2id5_A 245 RHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLE 323 (477)
T ss_dssp TTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCC
T ss_pred cCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCC-cCceeCHhHcCCCcccC
Confidence 77788888888888777776666777788888888888877777777777788888888887 67766666667777888
Q ss_pred eeeccCCccC
Q 009672 475 SLNVSNSRIT 484 (529)
Q Consensus 475 ~L~l~~~~~~ 484 (529)
.|++++|++.
T Consensus 324 ~L~l~~N~l~ 333 (477)
T 2id5_A 324 TLILDSNPLA 333 (477)
T ss_dssp EEECCSSCEE
T ss_pred EEEccCCCcc
Confidence 8888887765
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-31 Score=278.79 Aligned_cols=429 Identities=20% Similarity=0.219 Sum_probs=284.2
Q ss_pred EEEecCcccCchhhhhccCC-CCCCeEeccCCcccCchhhhhccCCCCCCEEEcCCCCccchhHHHHHhCCCCCCEEecc
Q 009672 61 SVDLSGSDVTDSGLIHLKDC-SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE 139 (529)
Q Consensus 61 ~l~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 139 (529)
+++-++.+++. .|. .+ +++++|+|++| .++...+..|.++++|++|+|++|. ++...+.+|.++++|++|+++
T Consensus 35 ~~~c~~~~l~~-vP~---~lp~~~~~LdLs~N-~i~~l~~~~f~~l~~L~~L~Ls~N~-i~~i~~~~f~~L~~L~~L~Ls 108 (635)
T 4g8a_A 35 TYQCMELNFYK-IPD---NLPFSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILT 108 (635)
T ss_dssp EEECTTSCCSS-CCS---SSCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECT
T ss_pred EEECCCCCcCc-cCC---CCCcCCCEEEeeCC-CCCCCCHHHHhCCCCCCEEECCCCc-CCCcChhHhcCCCCCCEEEcc
Confidence 45555555653 222 33 37999999998 6888888899999999999999998 666677789999999999999
Q ss_pred CccccccccccccCCCcCcEEeccCCcccCccccccccCCCCCCeEEccCCCCChhH-HHHhhccCccchhhhhhhhHHH
Q 009672 140 RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG-IAYLKGLSISSVIFILCSMIIR 218 (529)
Q Consensus 140 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~ 218 (529)
+|......+..|.++++|++|++++ +.+.......++++++|++|++++|.++... +..
T Consensus 109 ~N~l~~l~~~~f~~L~~L~~L~Ls~-N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~------------------- 168 (635)
T 4g8a_A 109 GNPIQSLALGAFSGLSSLQKLVAVE-TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY------------------- 168 (635)
T ss_dssp TCCCCEECGGGGTTCTTCCEEECTT-SCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG-------------------
T ss_pred CCcCCCCCHHHhcCCCCCCEEECCC-CcCCCCChhhhhcCcccCeeccccCccccCCCchh-------------------
Confidence 9865444556789999999999999 4577666677999999999999999887532 222
Q ss_pred hhhhhhhhcccCCccEEEccCCCCCHHHHHHhhcCC----CCCeEecCCCcCChhhh-----------------------
Q 009672 219 LFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALG----SLFYLNLNRCQLSDDGC----------------------- 271 (529)
Q Consensus 219 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~----~L~~L~l~~~~~~~~~~----------------------- 271 (529)
+..+++|++|++++|.+....+..+..+. ....++++.+.+....+
T Consensus 169 -------~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~ 241 (635)
T 4g8a_A 169 -------FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVM 241 (635)
T ss_dssp -------GGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHH
T ss_pred -------hccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhccccccccc
Confidence 34448999999999988765554444332 23345555554433221
Q ss_pred -HhhhcCCCccEEEcc---------------------------------------------------------CCCCChH
Q 009672 272 -EKFSKIGSLKVLNLG---------------------------------------------------------FNEITDE 293 (529)
Q Consensus 272 -~~l~~~~~L~~L~l~---------------------------------------------------------~~~~~~~ 293 (529)
..+..+..++...+. .+.+..
T Consensus 242 ~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~- 320 (635)
T 4g8a_A 242 KTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIER- 320 (635)
T ss_dssp HHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEE-
T ss_pred chhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccc-
Confidence 112222222222211 000000
Q ss_pred HHHhhcCCCCCCEEECCCCCCChhhh-------------------hhhcCCCCCCeEEcCCCccChh--hhhhccCCCCC
Q 009672 294 CLVHLKGLTNLESLNLDSCGIGDEGL-------------------VNLTGLCNLKCLELSDTQVGSS--GLRHLSGLTNL 352 (529)
Q Consensus 294 ~~~~~~~~~~L~~L~l~~~~~~~~~~-------------------~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L 352 (529)
...+.....++.|++.++.+..... .....+++|+.++++.|.+... .+.....+.++
T Consensus 321 -~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L 399 (635)
T 4g8a_A 321 -VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISL 399 (635)
T ss_dssp -CGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCC
T ss_pred -ccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhh
Confidence 0011222334444443332211100 0011123334444433333211 11112233344
Q ss_pred CeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHH-HHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccC
Q 009672 353 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT-GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 431 (529)
Q Consensus 353 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~ 431 (529)
+.+++..+..... ...+..+++|+.+++..+..... ....+..+++++.++++.|.+....+..+..+++|+.|++++
T Consensus 400 ~~L~~~~~~~~~~-~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~ 478 (635)
T 4g8a_A 400 KYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 478 (635)
T ss_dssp CEEECCSCSEEEE-CSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTT
T ss_pred hhhhccccccccc-cccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhh
Confidence 4444444333221 12344566777777776544332 123456778899999999988887777888899999999999
Q ss_pred CCCC-hhhhhhccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccChhHHHhccCCCCCcEEeecCccCChh
Q 009672 432 GGLT-DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 510 (529)
Q Consensus 432 ~~l~-~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 510 (529)
|.+. ...+..+..+++|++|++++| .++...+..|.++++|+.|+|++|.+.+..+..+..+++|+.|++++|+++..
T Consensus 479 N~~~~~~~~~~~~~l~~L~~L~Ls~N-~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~ 557 (635)
T 4g8a_A 479 NSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 557 (635)
T ss_dssp CEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBC
T ss_pred cccccccCchhhhhccccCEEECCCC-ccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCC
Confidence 9754 345567888999999999999 89998889999999999999999999998888899999999999999999887
Q ss_pred HHHHhhcCCC-CCceecCC
Q 009672 511 DIKRLQSRDL-PNLVSFRP 528 (529)
Q Consensus 511 ~~~~l~~~~~-~~l~~l~~ 528 (529)
....+. .+ ++|+.|++
T Consensus 558 ~~~~l~--~l~~~L~~L~L 574 (635)
T 4g8a_A 558 KKQELQ--HFPSSLAFLNL 574 (635)
T ss_dssp CSSCTT--CCCTTCCEEEC
T ss_pred CHHHHH--hhhCcCCEEEe
Confidence 666565 44 57887765
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-29 Score=243.37 Aligned_cols=307 Identities=29% Similarity=0.345 Sum_probs=166.5
Q ss_pred ccCCCCCCEEEcCCCCccchhHHHHHhCCCCCCEEeccCccccccccccccCCCcCcEEeccCCcccCccccccccCCCC
Q 009672 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181 (529)
Q Consensus 102 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 181 (529)
+..+++|++|+++++.. ... + .+..+++|++|++++|... ..+. +..+++|++|++++| .+.+ .+.+..+++
T Consensus 40 ~~~l~~L~~L~l~~~~i-~~~-~-~~~~~~~L~~L~l~~n~i~-~~~~-~~~l~~L~~L~L~~n-~i~~--~~~~~~l~~ 111 (347)
T 4fmz_A 40 QEELESITKLVVAGEKV-ASI-Q-GIEYLTNLEYLNLNGNQIT-DISP-LSNLVKLTNLYIGTN-KITD--ISALQNLTN 111 (347)
T ss_dssp HHHHTTCSEEECCSSCC-CCC-T-TGGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSS-CCCC--CGGGTTCTT
T ss_pred chhcccccEEEEeCCcc-ccc-h-hhhhcCCccEEEccCCccc-cchh-hhcCCcCCEEEccCC-cccC--chHHcCCCc
Confidence 44667888888888763 322 2 3667777777777776432 2222 666677777777764 3332 234666666
Q ss_pred CCeEEccCCCCChhHHHHhhccCccchhhhhhhhHHHhhhhhhhhcccCCccEEEccCCCCCHHHHHHhhcCCCCCeEec
Q 009672 182 LKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 261 (529)
Q Consensus 182 L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 261 (529)
|++|++++|.+++... +.. +++|+.|++++|...... ..+..+++|++|++
T Consensus 112 L~~L~l~~n~i~~~~~--~~~--------------------------l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l 162 (347)
T 4fmz_A 112 LRELYLNEDNISDISP--LAN--------------------------LTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTV 162 (347)
T ss_dssp CSEEECTTSCCCCCGG--GTT--------------------------CTTCCEEECTTCTTCCCC-GGGTTCTTCCEEEC
T ss_pred CCEEECcCCcccCchh--hcc--------------------------CCceeEEECCCCCCcccc-cchhhCCCCcEEEe
Confidence 7777776666554322 222 266666666666332221 22455555666666
Q ss_pred CCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChh
Q 009672 262 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 341 (529)
Q Consensus 262 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 341 (529)
++|.+....+ +..+++|++|++++|.+.+..+ +..+++|+.+++.++ .+...
T Consensus 163 ~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n------------------------~l~~~ 214 (347)
T 4fmz_A 163 TESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVN------------------------QITDI 214 (347)
T ss_dssp CSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSS------------------------CCCCC
T ss_pred cCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccC------------------------CCCCC
Confidence 5555543322 4445555555555554443211 344445555555444 44333
Q ss_pred hhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcC
Q 009672 342 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 421 (529)
Q Consensus 342 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~ 421 (529)
.. +..+++|+.|++++|.+..... +..+++|++|++++|.+... ..+..+++|+.|++++|.+++. ..+..+
T Consensus 215 ~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l 286 (347)
T 4fmz_A 215 TP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNL 286 (347)
T ss_dssp GG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGC
T ss_pred ch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCC
Confidence 22 3444455555555554444322 44555555555555555442 2344555666666666655554 234556
Q ss_pred CCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccC
Q 009672 422 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484 (529)
Q Consensus 422 ~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 484 (529)
++|++|++++|.+++..+..+..+++|++|++++| .++...+ +..+++|+.|++++|+++
T Consensus 287 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 287 SQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN-HITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp TTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSS-SCCCCGG--GGGCTTCSEESSSCC---
T ss_pred CCCCEEECcCCcCCCcChhHhhccccCCEEEccCC-ccccccC--hhhhhccceeehhhhccc
Confidence 66666666666666665566666666666666666 4555444 556666666666666553
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.4e-31 Score=262.15 Aligned_cols=304 Identities=21% Similarity=0.201 Sum_probs=228.7
Q ss_pred CCceeEEEecCcccCchhhhhccCCCCCCeEeccCCcccCchhhhhccCCCCCCEEEcCCCCccchhHHHHHhCCCCCCE
Q 009672 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135 (529)
Q Consensus 56 ~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 135 (529)
++++++|+|++|.+++..+..|+.+++|++|+|++| .+....+..|.++++|++|++++|. ++...+..|.++++|++
T Consensus 31 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~ 108 (477)
T 2id5_A 31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTK 108 (477)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSSTTCTTCCE
T ss_pred CCCCcEEECCCCccceECHhHccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCCc-CCccCcccccCCCCCCE
Confidence 456888888888888777777888888888888887 6777777788888888888888887 45555556778888888
Q ss_pred EeccCccccccccccccCCCcCcEEeccCCcccCccccccccCCCCCCeEEccCCCCChhHHHHhhccCccchhhhhhhh
Q 009672 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSM 215 (529)
Q Consensus 136 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 215 (529)
|++++|......+..+..+++|++|++++ +.+....+..+..+++|++|++++|.++......+..+
T Consensus 109 L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l------------ 175 (477)
T 2id5_A 109 LDISENKIVILLDYMFQDLYNLKSLEVGD-NDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHL------------ 175 (477)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEEECC-TTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTC------------
T ss_pred EECCCCccccCChhHccccccCCEEECCC-CccceeChhhccCCCCCCEEECCCCcCcccChhHhccc------------
Confidence 88888765555556777888888888887 45666666777888888888888887776555555444
Q ss_pred HHHhhhhhhhhcccCCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHH
Q 009672 216 IIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 295 (529)
Q Consensus 216 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 295 (529)
++|+.|+++++.+....+..+..+++|+.|++++|......+.......+|++|++++|.+.....
T Consensus 176 --------------~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 241 (477)
T 2id5_A 176 --------------HGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPY 241 (477)
T ss_dssp --------------TTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCH
T ss_pred --------------CCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCH
Confidence 788888888887777655667778888888888876655444444445578888888887775555
Q ss_pred HhhcCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCC
Q 009672 296 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 375 (529)
Q Consensus 296 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 375 (529)
..+..+++|+.|++++|.+.......+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.......+..+++
T Consensus 242 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 321 (477)
T 2id5_A 242 LAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGN 321 (477)
T ss_dssp HHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGG
T ss_pred HHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcc
Confidence 56777888888888888777666666777788888888888777776677777788888888888777766666777777
Q ss_pred CcEEECCCCCCCH
Q 009672 376 LKSLNLDARQITD 388 (529)
Q Consensus 376 L~~L~l~~~~~~~ 388 (529)
|+.|++++|++..
T Consensus 322 L~~L~l~~N~l~c 334 (477)
T 2id5_A 322 LETLILDSNPLAC 334 (477)
T ss_dssp CCEEECCSSCEEC
T ss_pred cCEEEccCCCccC
Confidence 8888888777754
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-30 Score=267.52 Aligned_cols=417 Identities=18% Similarity=0.185 Sum_probs=308.1
Q ss_pred CeEeccCCcccCchhhhhccCCCCCCEEEcCCCCccc--------------hhHHHHHhCCCCCCEEeccCccccccccc
Q 009672 84 QSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT--------------AQGMKAFAGLINLVKLDLERCTRIHGGLV 149 (529)
Q Consensus 84 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--------------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 149 (529)
+.+.+..+. .......+.++++|++|+++++..+. .........+++|++|++++|......+.
T Consensus 53 ~~l~~~~~~--~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~ 130 (592)
T 3ogk_B 53 EHVTMALCY--TATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLD 130 (592)
T ss_dssp CEEEESCGG--GSCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHH
T ss_pred cEEEEeecc--ccChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHH
Confidence 345555442 22334566789999999998765322 12344455899999999999854444445
Q ss_pred cccC-CCc-CcEEeccCCcccCccccccc-cCCCCCCeEEccCCCCChhHHHHhhccCccchhhhhhhhHHHhhhhhhhh
Q 009672 150 NLKG-LMK-LESLNIKWCNCITDSDMKPL-SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFL 226 (529)
Q Consensus 150 ~~~~-~~~-L~~L~l~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (529)
.+.. ++. |++|++++|..+.......+ ..+++|++|++++|.+++.+...+..+ .
T Consensus 131 ~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~----------------------~ 188 (592)
T 3ogk_B 131 RLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHEL----------------------A 188 (592)
T ss_dssp HHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHH----------------------H
T ss_pred HHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHH----------------------H
Confidence 5544 445 99999999875544333333 378999999999998776543333222 3
Q ss_pred cccCCccEEEccCCCCC----HHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCC---hHHHHhhc
Q 009672 227 TSLQKLTLLNLEGCPVT----AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT---DECLVHLK 299 (529)
Q Consensus 227 ~~~~~L~~L~l~~~~~~----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~---~~~~~~~~ 299 (529)
..+++|+.|+++++.+. ...+..+.++++|+.|++++|.+.. .+..+..+++|+.|+++..... ......+.
T Consensus 189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 267 (592)
T 3ogk_B 189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLV 267 (592)
T ss_dssp HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCC
T ss_pred hcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhh
Confidence 44599999999999886 4555667789999999999998876 4467788999999999853322 12233466
Q ss_pred CCCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhh-hhccCCCCCCeEeccCCCCChhhhhh-hcCCCCCc
Q 009672 300 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL-RHLSGLTNLESINLSFTGISDGSLRK-LAGLSSLK 377 (529)
Q Consensus 300 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~-l~~~~~L~ 377 (529)
.+++|+.+.+.++... ..+..+..+++|++|++++|.++.... ..+..+++|+.|++. +.+.+..... ...+++|+
T Consensus 268 ~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~ 345 (592)
T 3ogk_B 268 FPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLK 345 (592)
T ss_dssp CCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCC
T ss_pred ccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCC
Confidence 7899999999886333 345566778999999999999776654 446889999999999 4454444333 35789999
Q ss_pred EEECC-----------CCCCCHHHHHHH-hcCCCCCEEecCCCCCChHHHHhhhc-CCCCcEEEcc----CCCCChh---
Q 009672 378 SLNLD-----------ARQITDTGLAAL-TSLTGLTHLDLFGARITDSGAAYLRN-FKNLRSLEIC----GGGLTDA--- 437 (529)
Q Consensus 378 ~L~l~-----------~~~~~~~~~~~l-~~~~~L~~L~l~~~~l~~~~~~~~~~-~~~L~~L~l~----~~~l~~~--- 437 (529)
+|++. .+.++......+ ..+++|+.|++..+.+++.....+.. +++|++|+++ .+.+++.
T Consensus 346 ~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~ 425 (592)
T 3ogk_B 346 RLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLD 425 (592)
T ss_dssp EEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCH
T ss_pred EEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHH
Confidence 99999 467777655554 47999999999888999887777754 9999999996 5567652
Q ss_pred --hhhhccCCCCCCeEecCCCC-CCChhHHHHHh-CCCCCCeeeccCCccChhHHH-hccCCCCCcEEeecCccCChhHH
Q 009672 438 --GVKHIKDLSSLTLLNLSQNC-NLTDKTLELIS-GLTGLVSLNVSNSRITSAGLR-HLKPLKNLRSLTLESCKVTANDI 512 (529)
Q Consensus 438 --~~~~~~~~~~L~~L~l~~~~-~l~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~ 512 (529)
....+.++++|++|+++.|. .+++..+..+. .+++|+.|++++|++++.... .+..+++|+.|++++|+++...+
T Consensus 426 ~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 505 (592)
T 3ogk_B 426 NGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAI 505 (592)
T ss_dssp HHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHH
T ss_pred HHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHH
Confidence 23345678999999998653 37777766665 489999999999999886554 45789999999999999988878
Q ss_pred HHhhcCCCCCceecCC
Q 009672 513 KRLQSRDLPNLVSFRP 528 (529)
Q Consensus 513 ~~l~~~~~~~l~~l~~ 528 (529)
..+. ..+|+|+.|++
T Consensus 506 ~~~~-~~l~~L~~L~l 520 (592)
T 3ogk_B 506 AAAV-TKLPSLRYLWV 520 (592)
T ss_dssp HHHH-HHCSSCCEEEE
T ss_pred HHHH-HhcCccCeeEC
Confidence 7776 57899998754
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.7e-31 Score=254.84 Aligned_cols=268 Identities=20% Similarity=0.168 Sum_probs=182.0
Q ss_pred CCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEEC
Q 009672 230 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 309 (529)
Q Consensus 230 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 309 (529)
++|++|++++|.+....+..+..+++|++|++++|.+.......+..+++|++|++++|.+....+..+..+++|+.|++
T Consensus 93 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 172 (390)
T 3o6n_A 93 HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQL 172 (390)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEEC
T ss_pred CCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEEC
Confidence 55555555555555444444555555666666655555444334455566666666666655444444556666666666
Q ss_pred CCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHH
Q 009672 310 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 389 (529)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 389 (529)
++|.+... .+..+++|+.+++++|.+... ...++|+.|++++|.+..... ...++|+.|++++|.+...
T Consensus 173 ~~n~l~~~---~~~~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~ 241 (390)
T 3o6n_A 173 SSNRLTHV---DLSLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT 241 (390)
T ss_dssp CSSCCSBC---CGGGCTTCSEEECCSSCCSEE-----ECCSSCSEEECCSSCCCEEEC---CCCSSCCEEECCSSCCCCC
T ss_pred CCCcCCcc---ccccccccceeeccccccccc-----CCCCcceEEECCCCeeeeccc---cccccccEEECCCCCCccc
Confidence 66655543 234556777777776665432 334567777777777765432 2346788888888888764
Q ss_pred HHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhC
Q 009672 390 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 469 (529)
Q Consensus 390 ~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~ 469 (529)
..+..+++|+.|++++|.+++..+..+..+++|++|++++|.++.. +..+..+++|++|++++| .++.. +..+..
T Consensus 242 --~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~ 316 (390)
T 3o6n_A 242 --AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHN-HLLHV-ERNQPQ 316 (390)
T ss_dssp --GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEE-ECSSSCCTTCCEEECCSS-CCCCC-GGGHHH
T ss_pred --HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCccc-CcccCCCCCCCEEECCCC-cceec-Cccccc
Confidence 4567888888888888888887777788888899999988888775 334566788999999998 67653 444667
Q ss_pred CCCCCeeeccCCccChhHHHhccCCCCCcEEeecCccCChhHHHHhh
Q 009672 470 LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 516 (529)
Q Consensus 470 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 516 (529)
+++|+.|++++|++.... +..+++|+.|++++|++++.....+.
T Consensus 317 l~~L~~L~L~~N~i~~~~---~~~~~~L~~L~l~~N~~~~~~~~~~~ 360 (390)
T 3o6n_A 317 FDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLRALF 360 (390)
T ss_dssp HTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHHHHT
T ss_pred cCcCCEEECCCCccceeC---chhhccCCEEEcCCCCccchhHHHHH
Confidence 888999999999887653 66788899999999998887766665
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=7.6e-29 Score=255.47 Aligned_cols=425 Identities=22% Similarity=0.230 Sum_probs=278.0
Q ss_pred HHHhcCCceeEEEecCcc-cCchh--------------hhhccCCCCCCeEeccCCcccCchhhhhcc-CCCCCCEEEcC
Q 009672 51 VIASQGSSLLSVDLSGSD-VTDSG--------------LIHLKDCSNLQSLDFNFCIQISDGGLEHLR-GLSNLTSLSFR 114 (529)
Q Consensus 51 ~~~~~~~~l~~l~l~~~~-~~~~~--------------~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~-~l~~L~~L~l~ 114 (529)
.....++++++|+++++. +++.. ......+++|+.|++++| .+.+..+..+. .+++|++|+++
T Consensus 60 ~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~~~~~~~l~~~~~~L~~L~L~ 138 (594)
T 2p1m_B 60 TVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRM-VVTDDCLELIAKSFKNFKVLVLS 138 (594)
T ss_dssp HHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHHHHHHHHCTTCCEEEEE
T ss_pred HHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCc-EEcHHHHHHHHHhCCCCcEEeCC
Confidence 445567888888888854 21111 111346788888888887 47766666664 68888888888
Q ss_pred CCCccchh-HHHHHhCCCCCCEEeccCccccccccccc----cCCCcCcEEeccCCc-ccCccccccc-cCCCCCCeEEc
Q 009672 115 RNNAITAQ-GMKAFAGLINLVKLDLERCTRIHGGLVNL----KGLMKLESLNIKWCN-CITDSDMKPL-SGLTNLKSLQI 187 (529)
Q Consensus 115 ~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----~~~~~L~~L~l~~~~-~~~~~~~~~l-~~~~~L~~L~l 187 (529)
+|..++.. .+..+.++++|++|++++|.........+ ..+++|++|++++|. .+.......+ ..+++|++|++
T Consensus 139 ~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L 218 (594)
T 2p1m_B 139 SCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKL 218 (594)
T ss_dssp SCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEEC
T ss_pred CcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEec
Confidence 88545544 44444578888888888876333333222 366788888888765 2332223332 35788899988
Q ss_pred cCCCCChhHHHHhhccCccchhhhhhhhHHHhhhhhhhhcccCCccEEEccCCCC--C----HHHHHHhhcCCCCCeE-e
Q 009672 188 SCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPV--T----AACLDSLSALGSLFYL-N 260 (529)
Q Consensus 188 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~--~----~~~~~~~~~~~~L~~L-~ 260 (529)
+++......... +..+++|+.|+++.+.. . ...+..+.++++|+.+ .
T Consensus 219 ~~~~~~~~l~~~--------------------------~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~ 272 (594)
T 2p1m_B 219 NRAVPLEKLATL--------------------------LQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSG 272 (594)
T ss_dssp CTTSCHHHHHHH--------------------------HHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEEC
T ss_pred CCCCcHHHHHHH--------------------------HhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccC
Confidence 877321111222 34448888888766532 1 1233466778888888 4
Q ss_pred cCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHh-hcCCCCCCEEECCCCCCChhhhhhh-cCCCCCCeEEcCC---
Q 009672 261 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH-LKGLTNLESLNLDSCGIGDEGLVNL-TGLCNLKCLELSD--- 335 (529)
Q Consensus 261 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~--- 335 (529)
+.+... ...+..+..+++|++|++++|.+.+..... +..+++|++|++.+| +.......+ ..+++|+.|++.+
T Consensus 273 ~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~ 350 (594)
T 2p1m_B 273 FWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEP 350 (594)
T ss_dssp CBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCT
T ss_pred Ccccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcc
Confidence 443322 222333345778888888888776544333 567888888888877 333333333 3478888888832
Q ss_pred ------CccChhhhhhcc-CCCCCCeEeccCCCCChhhhhhhc-CCCCCcEEECC--C----CCCC----HHH-HHHHhc
Q 009672 336 ------TQVGSSGLRHLS-GLTNLESINLSFTGISDGSLRKLA-GLSSLKSLNLD--A----RQIT----DTG-LAALTS 396 (529)
Q Consensus 336 ------~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~--~----~~~~----~~~-~~~l~~ 396 (529)
+.+++.....+. .+++|+.|.+..+.+++.....+. .+++|+.|++. + +.++ +.. ...+..
T Consensus 351 ~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~ 430 (594)
T 2p1m_B 351 FVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEH 430 (594)
T ss_dssp TCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHH
T ss_pred cccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhh
Confidence 345555444443 478888888877888776666665 57888888887 3 4555 222 233567
Q ss_pred CCCCCEEecCCCCCChHHHHhhhc-CCCCcEEEccCCCCChhhhhhc-cCCCCCCeEecCCCCCCChhHHH-HHhCCCCC
Q 009672 397 LTGLTHLDLFGARITDSGAAYLRN-FKNLRSLEICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLE-LISGLTGL 473 (529)
Q Consensus 397 ~~~L~~L~l~~~~l~~~~~~~~~~-~~~L~~L~l~~~~l~~~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~-~l~~l~~L 473 (529)
+++|+.|++++ .+++.+...+.. +++|++|++++|.+++.+...+ ..+++|++|++++| .+++.... ....+++|
T Consensus 431 ~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n-~~~~~~~~~~~~~l~~L 508 (594)
T 2p1m_B 431 CKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDC-PFGDKALLANASKLETM 508 (594)
T ss_dssp CTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESC-SCCHHHHHHTGGGGGGS
T ss_pred CCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCC-CCcHHHHHHHHHhCCCC
Confidence 88899999877 777766666654 8889999999888888777666 56888999999988 45665554 33458889
Q ss_pred CeeeccCCccChhHHHhc-cCCCCCcEEeecCcc
Q 009672 474 VSLNVSNSRITSAGLRHL-KPLKNLRSLTLESCK 506 (529)
Q Consensus 474 ~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~ 506 (529)
+.|++++|+++..+...+ ..++.|+...+..+.
T Consensus 509 ~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~ 542 (594)
T 2p1m_B 509 RSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERG 542 (594)
T ss_dssp SEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSS
T ss_pred CEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCC
Confidence 999999998877666655 567888776666553
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-29 Score=249.17 Aligned_cols=344 Identities=20% Similarity=0.149 Sum_probs=215.0
Q ss_pred CCceeEEEecCcccCchhhhhccCCCCCCeEeccCCcccCchhhhhccCCCCCCEEEcCCCCccchhHHHHHhCCCCCCE
Q 009672 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135 (529)
Q Consensus 56 ~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 135 (529)
++++++|+++++.+++. +.++.+++|++|++++| .++.. .++.+++|++|++++|. ++.. + +.++++|++
T Consensus 41 l~~L~~L~Ls~n~l~~~--~~l~~l~~L~~L~Ls~n-~l~~~---~~~~l~~L~~L~Ls~N~-l~~~-~--~~~l~~L~~ 110 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDM--TGIEKLTGLTKLICTSN-NITTL---DLSQNTNLTYLACDSNK-LTNL-D--VTPLTKLTY 110 (457)
T ss_dssp HTTCCEEECCSSCCCCC--TTGGGCTTCSEEECCSS-CCSCC---CCTTCTTCSEEECCSSC-CSCC-C--CTTCTTCCE
T ss_pred cCCCCEEEccCCCcccC--hhhcccCCCCEEEccCC-cCCeE---ccccCCCCCEEECcCCC-Ccee-e--cCCCCcCCE
Confidence 46689999999888864 36888889999999887 46664 27788889999998887 4443 2 778888888
Q ss_pred EeccCccccccccccccCCCcCcEEeccCCcccCccccccccCCCCCCeEEccCCCCChhHHHHhhccCccchhhhhhhh
Q 009672 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSM 215 (529)
Q Consensus 136 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 215 (529)
|++++|... .. .++.+++|++|++++| .+.+. .++.+++|++|++++|...... .
T Consensus 111 L~L~~N~l~-~l--~~~~l~~L~~L~l~~N-~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~---------------- 165 (457)
T 3bz5_A 111 LNCDTNKLT-KL--DVSQNPLLTYLNCARN-TLTEI---DVSHNTQLTELDCHLNKKITKL--D---------------- 165 (457)
T ss_dssp EECCSSCCS-CC--CCTTCTTCCEEECTTS-CCSCC---CCTTCTTCCEEECTTCSCCCCC--C----------------
T ss_pred EECCCCcCC-ee--cCCCCCcCCEEECCCC-cccee---ccccCCcCCEEECCCCCccccc--c----------------
Confidence 888887533 32 2778888888888874 45443 3677888888888887432211 1
Q ss_pred HHHhhhhhhhhcccCCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHH
Q 009672 216 IIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 295 (529)
Q Consensus 216 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 295 (529)
+..+++|+.|++++|.+.... +..+++|+.|++++|.+... .+..+++|+.|++++|++.+ .+
T Consensus 166 ----------~~~l~~L~~L~ls~n~l~~l~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip 228 (457)
T 3bz5_A 166 ----------VTPQTQLTTLDCSFNKITELD---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID 228 (457)
T ss_dssp ----------CTTCTTCCEEECCSSCCCCCC---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC
T ss_pred ----------cccCCcCCEEECCCCccceec---cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC
Confidence 233478888888888877632 66778888888888887764 35677888888888888876 33
Q ss_pred HhhcCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCC
Q 009672 296 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 375 (529)
Q Consensus 296 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 375 (529)
+..+++|+.|++++|.+.... ...+++|+.|+++.+. |+.+++++|......+ +..+++
T Consensus 229 --~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n~--------------L~~L~l~~n~~~~~~~--~~~l~~ 287 (457)
T 3bz5_A 229 --VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQTD--------------LLEIDLTHNTQLIYFQ--AEGCRK 287 (457)
T ss_dssp --CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTCC--------------CSCCCCTTCTTCCEEE--CTTCTT
T ss_pred --ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCCC--------------CCEEECCCCccCCccc--cccccc
Confidence 667788888888888776543 3445566666554432 3333344333222111 223444
Q ss_pred CcEEECCCCCCCHHHHH--------HHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCC
Q 009672 376 LKSLNLDARQITDTGLA--------ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 447 (529)
Q Consensus 376 L~~L~l~~~~~~~~~~~--------~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~ 447 (529)
|+.|++++|...+..+. .++.+++|+.|++++|++++. .+.++++|+.|++++|++++ ++.
T Consensus 288 L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~--------l~~ 356 (457)
T 3bz5_A 288 IKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD--------FSS 356 (457)
T ss_dssp CCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB--------CTT
T ss_pred CCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCC--------ccc
Confidence 44444444432211000 012234566666666655553 25556666666666665553 234
Q ss_pred CCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccChhHHH
Q 009672 448 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 489 (529)
Q Consensus 448 L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 489 (529)
|..|++++| .+... ..+..|..+++++|.+++..|.
T Consensus 357 L~~L~l~~n-~l~g~-----~~~~~l~~l~l~~N~l~g~ip~ 392 (457)
T 3bz5_A 357 VGKIPALNN-NFEAE-----GQTITMPKETLTNNSLTIAVSP 392 (457)
T ss_dssp GGGSSGGGT-SEEEE-----EEEEECCCBCCBTTBEEEECCT
T ss_pred cccccccCC-cEEec-----ceeeecCccccccCcEEEEcCh
Confidence 444555555 33332 2345566666777766655543
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-29 Score=260.22 Aligned_cols=268 Identities=20% Similarity=0.164 Sum_probs=154.5
Q ss_pred CCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEEC
Q 009672 230 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 309 (529)
Q Consensus 230 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 309 (529)
++|++|++++|.+....+..|..+++|++|++++|.+...++..+..+++|++|++++|.+.+..+..+..+++|+.|++
T Consensus 99 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 178 (597)
T 3oja_B 99 HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQL 178 (597)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEEC
Confidence 44444444444444333333444444444444444444333333444455555555555544433444455555555555
Q ss_pred CCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHH
Q 009672 310 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 389 (529)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 389 (529)
++|.+... .+..+++|+.|++++|.+... ...++|+.|++++|.+...... ..++|+.|++++|.+.+
T Consensus 179 ~~N~l~~~---~~~~l~~L~~L~l~~n~l~~l-----~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~L~~n~l~~- 246 (597)
T 3oja_B 179 SSNRLTHV---DLSLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTD- 246 (597)
T ss_dssp TTSCCSBC---CGGGCTTCSEEECCSSCCSEE-----ECCTTCSEEECCSSCCCEEECS---CCSCCCEEECCSSCCCC-
T ss_pred cCCCCCCc---ChhhhhhhhhhhcccCccccc-----cCCchhheeeccCCcccccccc---cCCCCCEEECCCCCCCC-
Confidence 55544432 133445556666655554332 2334566666666665543321 12467777777776665
Q ss_pred HHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhC
Q 009672 390 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 469 (529)
Q Consensus 390 ~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~ 469 (529)
+..++.+++|+.|++++|.+++..+..+..+++|+.|++++|.++.. +..+..+++|++|++++| .++. +|..+..
T Consensus 247 -~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~Ls~N-~l~~-i~~~~~~ 322 (597)
T 3oja_B 247 -TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHN-HLLH-VERNQPQ 322 (597)
T ss_dssp -CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEE-ECSSSCCTTCCEEECCSS-CCCC-CGGGHHH
T ss_pred -ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCC-CcccccCCCCcEEECCCC-CCCc-cCccccc
Confidence 34566777777777777777776666677777777777777777664 334455677777777777 5654 3444566
Q ss_pred CCCCCeeeccCCccChhHHHhccCCCCCcEEeecCccCChhHHHHhh
Q 009672 470 LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 516 (529)
Q Consensus 470 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 516 (529)
+++|+.|++++|.+.... +..+++|+.|++++|++++.....+-
T Consensus 323 l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~~~~~ 366 (597)
T 3oja_B 323 FDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLRALF 366 (597)
T ss_dssp HTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHHHHT
T ss_pred CCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChhHHHHH
Confidence 777777777777776542 55667777777777777766554443
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=8.7e-29 Score=240.72 Aligned_cols=313 Identities=17% Similarity=0.109 Sum_probs=180.5
Q ss_pred CCceeEEEecCcccCchhhhhccCCCCCCeEeccCCcccCchhhhhccCCCCCCEEEcCCCCccchhHHHHHhCCCCCCE
Q 009672 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135 (529)
Q Consensus 56 ~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 135 (529)
.+++++++++++.++......++.+++|++|++++| .+....+..|..+++|++|++++|. ++...+..|.++++|++
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCC-cccccChhhccCCCCcCEEECCCCC-CCcCCHHHhcCCCCCCE
Confidence 366777777777777655555677777777777776 4666666677777777777777776 45555666677777777
Q ss_pred EeccCccccccccccccCCCcCcEEeccCCcccCccccccccCCCCCCeEEccCCCCChhHHHHhhccCccchhhhhhhh
Q 009672 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSM 215 (529)
Q Consensus 136 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 215 (529)
|++++|.........+..+++|++|++++ +.+....+..+..+++|++|++++|.++... +
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~--------------- 182 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSN-NNLERIEDDTFQATTSLQNLQLSSNRLTHVD---L--------------- 182 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---G---------------
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCC-CccCccChhhccCCCCCCEEECCCCcCCccc---c---------------
Confidence 77777643322223356667777777776 3445444555666667777777666665431 1
Q ss_pred HHHhhhhhhhhcccCCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHH
Q 009672 216 IIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 295 (529)
Q Consensus 216 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 295 (529)
..+++|+.|+++++.+.. +...++|+.|++++|.+.....
T Consensus 183 -----------~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~~~------------------------ 222 (390)
T 3o6n_A 183 -----------SLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRG------------------------ 222 (390)
T ss_dssp -----------GGCTTCSEEECCSSCCSE-----EECCSSCSEEECCSSCCCEEEC------------------------
T ss_pred -----------ccccccceeecccccccc-----cCCCCcceEEECCCCeeeeccc------------------------
Confidence 112566666666665543 1233455555555555443211
Q ss_pred HhhcCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCC
Q 009672 296 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 375 (529)
Q Consensus 296 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 375 (529)
...++|+.|++.+|.+... ..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+... +..+..+++
T Consensus 223 ---~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~ 296 (390)
T 3o6n_A 223 ---PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPT 296 (390)
T ss_dssp ---CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEE-ECSSSCCTT
T ss_pred ---cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCccc-CcccCCCCC
Confidence 1123444444444444332 2344455555555555555444444455555555555555555442 222344566
Q ss_pred CcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhh
Q 009672 376 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 439 (529)
Q Consensus 376 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~ 439 (529)
|+.|++++|.+... +..+..+++|+.|++++|.++... +..+++|++|++++|++.....
T Consensus 297 L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~N~i~~~~---~~~~~~L~~L~l~~N~~~~~~~ 356 (390)
T 3o6n_A 297 LKVLDLSHNHLLHV-ERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSL 356 (390)
T ss_dssp CCEEECCSSCCCCC-GGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHH
T ss_pred CCEEECCCCcceec-CccccccCcCCEEECCCCccceeC---chhhccCCEEEcCCCCccchhH
Confidence 66666666666543 223445566777777766666542 4556677777777777665443
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.2e-29 Score=246.35 Aligned_cols=322 Identities=18% Similarity=0.196 Sum_probs=164.2
Q ss_pred cCCceeEEEecCcccCchhhhhccCCCCCCeEeccCCcccCchhhhhccCCCCCCEEEcCCCCccchhHHHHHhCCCCCC
Q 009672 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134 (529)
Q Consensus 55 ~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 134 (529)
.++++++|++++|.+++. .++.+++|++|++++| .+... .++.+++|++|++++|. ++.. + +..+++|+
T Consensus 62 ~l~~L~~L~Ls~n~l~~~---~~~~l~~L~~L~Ls~N-~l~~~---~~~~l~~L~~L~L~~N~-l~~l-~--~~~l~~L~ 130 (457)
T 3bz5_A 62 KLTGLTKLICTSNNITTL---DLSQNTNLTYLACDSN-KLTNL---DVTPLTKLTYLNCDTNK-LTKL-D--VSQNPLLT 130 (457)
T ss_dssp GCTTCSEEECCSSCCSCC---CCTTCTTCSEEECCSS-CCSCC---CCTTCTTCCEEECCSSC-CSCC-C--CTTCTTCC
T ss_pred ccCCCCEEEccCCcCCeE---ccccCCCCCEEECcCC-CCcee---ecCCCCcCCEEECCCCc-CCee-c--CCCCCcCC
Confidence 456666666666666553 2566666666666665 34443 25566666666666665 3332 2 55666666
Q ss_pred EEeccCccccccccccccCCCcCcEEeccCCcccCccccccccCCCCCCeEEccCCCCChhHHHHhhccCccchhhhhhh
Q 009672 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCS 214 (529)
Q Consensus 135 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~ 214 (529)
+|++++|.... . .++.+++|++|++++|..+... .+..+++|+.|++++|.++... +
T Consensus 131 ~L~l~~N~l~~-l--~l~~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n~l~~l~---l-------------- 187 (457)
T 3bz5_A 131 YLNCARNTLTE-I--DVSHNTQLTELDCHLNKKITKL---DVTPQTQLTTLDCSFNKITELD---V-------------- 187 (457)
T ss_dssp EEECTTSCCSC-C--CCTTCTTCCEEECTTCSCCCCC---CCTTCTTCCEEECCSSCCCCCC---C--------------
T ss_pred EEECCCCccce-e--ccccCCcCCEEECCCCCccccc---ccccCCcCCEEECCCCccceec---c--------------
Confidence 66666654222 1 2555666666666665444332 3555666666666666655421 2
Q ss_pred hHHHhhhhhhhhcccCCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHH
Q 009672 215 MIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 294 (529)
Q Consensus 215 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 294 (529)
..+++|+.|++++|.+... .+..+++|+.|++++|.+.... +..+++|+.|++++|.+.+..
T Consensus 188 ------------~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ip---~~~l~~L~~L~l~~N~l~~~~ 249 (457)
T 3bz5_A 188 ------------SQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNPLTELD 249 (457)
T ss_dssp ------------TTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC
T ss_pred ------------ccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccccC---ccccCCCCEEEeeCCcCCCcC
Confidence 2226666666666665553 2555666666666666665521 455566666666666665422
Q ss_pred HHhhcCCCCCCEEECCCCCCChhh--------hhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhh
Q 009672 295 LVHLKGLTNLESLNLDSCGIGDEG--------LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 366 (529)
Q Consensus 295 ~~~~~~~~~L~~L~l~~~~~~~~~--------~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 366 (529)
+..+++|+.|++..+.+.... ...++.+++|+.|++++|......+ ...++|+.++
T Consensus 250 ---~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~---~~~~~L~~L~---------- 313 (457)
T 3bz5_A 250 ---VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLD---CQAAGITELD---------- 313 (457)
T ss_dssp ---CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEE---CTTCCCSCCC----------
T ss_pred ---HHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceec---cCCCcceEec----------
Confidence 334455555544433211100 0001222333333333332211111 0111222222
Q ss_pred hhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCC
Q 009672 367 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 446 (529)
Q Consensus 367 ~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~ 446 (529)
++++++|+.|++++|.+++. .++.+++|+.|++++|++++ ++.|+.|++++|.+.+. ..+.
T Consensus 314 ---l~~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~ 374 (457)
T 3bz5_A 314 ---LSQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTI 374 (457)
T ss_dssp ---CTTCTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEE
T ss_pred ---hhhcccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceee
Confidence 22335666666666666653 25566666666666666554 24455555555555443 2234
Q ss_pred CCCeEecCCCCCCChhHH
Q 009672 447 SLTLLNLSQNCNLTDKTL 464 (529)
Q Consensus 447 ~L~~L~l~~~~~l~~~~~ 464 (529)
.|..+++++| .++..+|
T Consensus 375 ~l~~l~l~~N-~l~g~ip 391 (457)
T 3bz5_A 375 TMPKETLTNN-SLTIAVS 391 (457)
T ss_dssp ECCCBCCBTT-BEEEECC
T ss_pred ecCccccccC-cEEEEcC
Confidence 4555666666 4554443
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.9e-29 Score=247.22 Aligned_cols=370 Identities=15% Similarity=0.074 Sum_probs=166.0
Q ss_pred CceeEEEecCcccCchhhhhccCCCCCCeEeccCCcccCchhhhhccCCCC-------------CCEEEcCCCCccchhH
Q 009672 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSN-------------LTSLSFRRNNAITAQG 123 (529)
Q Consensus 57 ~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~-------------L~~L~l~~~~~~~~~~ 123 (529)
+++++++++++.+ +..+..++++++|+.|++++| .+.+..+..++.+++ +++|++++|. +++ .
T Consensus 11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n-~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~-l~~-l 86 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWS-EWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG-LSS-L 86 (454)
T ss_dssp ------------------------CCHHHHHHHHH-HHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC-CSC-C
T ss_pred ccchhhhcccCch-hhCChhHhcccchhhhhccCC-cccccCCcccccchhcchhhhhhhhccCCCEEEecCCc-ccc-C
Confidence 4566666666666 455555666666666666665 344444555555443 3666666665 222 1
Q ss_pred HHHHhCCCCCCEEeccCccccccccccccCCCcCcEEeccCCcccCccccccccCC-CCCCeEEccCCCCChhHHHHhhc
Q 009672 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL-TNLKSLQISCSKVTDSGIAYLKG 202 (529)
Q Consensus 124 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~l~~ 202 (529)
|. -.++|++|++++|.. .+.+. ..++|++|++++| .+.+ +... ++|++|++++|.++... .+
T Consensus 87 p~---~~~~L~~L~l~~n~l-~~lp~---~~~~L~~L~l~~n-~l~~-----l~~~~~~L~~L~L~~n~l~~lp--~~-- 149 (454)
T 1jl5_A 87 PE---LPPHLESLVASCNSL-TELPE---LPQSLKSLLVDNN-NLKA-----LSDLPPLLEYLGVSNNQLEKLP--EL-- 149 (454)
T ss_dssp CS---CCTTCSEEECCSSCC-SSCCC---CCTTCCEEECCSS-CCSC-----CCSCCTTCCEEECCSSCCSSCC--CC--
T ss_pred CC---CcCCCCEEEccCCcC-Ccccc---ccCCCcEEECCCC-ccCc-----ccCCCCCCCEEECcCCCCCCCc--cc--
Confidence 11 135666666666532 22221 2256666666653 2322 1111 46666666666555321 12
Q ss_pred cCccchhhhhhhhHHHhhhhhhhhcccCCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccE
Q 009672 203 LSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 282 (529)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 282 (529)
..+++|++|++++|.+... +. ..++|++|++++|.+... + .+..+++|++
T Consensus 150 ------------------------~~l~~L~~L~l~~N~l~~l-p~---~~~~L~~L~L~~n~l~~l-~-~~~~l~~L~~ 199 (454)
T 1jl5_A 150 ------------------------QNSSFLKIIDVDNNSLKKL-PD---LPPSLEFIAAGNNQLEEL-P-ELQNLPFLTA 199 (454)
T ss_dssp ------------------------TTCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSSC-C-CCTTCTTCCE
T ss_pred ------------------------CCCCCCCEEECCCCcCccc-CC---CcccccEEECcCCcCCcC-c-cccCCCCCCE
Confidence 2336666666666655431 11 124666666666665542 2 3555666666
Q ss_pred EEccCCCCChHHHHhhcCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCC
Q 009672 283 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 362 (529)
Q Consensus 283 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 362 (529)
|++++|.+.+ .+. ..++|+.|++++|.+... + .+..+++|+.|++++|.+.... ...++|+.|++++|.+
T Consensus 200 L~l~~N~l~~-l~~---~~~~L~~L~l~~n~l~~l-p-~~~~l~~L~~L~l~~N~l~~l~----~~~~~L~~L~l~~N~l 269 (454)
T 1jl5_A 200 IYADNNSLKK-LPD---LPLSLESIVAGNNILEEL-P-ELQNLPFLTTIYADNNLLKTLP----DLPPSLEALNVRDNYL 269 (454)
T ss_dssp EECCSSCCSS-CCC---CCTTCCEEECCSSCCSSC-C-CCTTCTTCCEEECCSSCCSSCC----SCCTTCCEEECCSSCC
T ss_pred EECCCCcCCc-CCC---CcCcccEEECcCCcCCcc-c-ccCCCCCCCEEECCCCcCCccc----ccccccCEEECCCCcc
Confidence 6666665543 111 124666666666655532 2 3555666666666666554321 1235566666666655
Q ss_pred ChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcC-CCCcEEEccCCCCChhhhhh
Q 009672 363 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF-KNLRSLEICGGGLTDAGVKH 441 (529)
Q Consensus 363 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~-~~L~~L~l~~~~l~~~~~~~ 441 (529)
..... ..++|+.|++++|.+++.. ...++|+.|++++|.+++.. .. ++|++|++++|.+++. +.
T Consensus 270 ~~l~~----~~~~L~~L~ls~N~l~~l~----~~~~~L~~L~l~~N~l~~i~-----~~~~~L~~L~Ls~N~l~~l-p~- 334 (454)
T 1jl5_A 270 TDLPE----LPQSLTFLDVSENIFSGLS----ELPPNLYYLNASSNEIRSLC-----DLPPSLEELNVSNNKLIEL-PA- 334 (454)
T ss_dssp SCCCC----CCTTCCEEECCSSCCSEES----CCCTTCCEEECCSSCCSEEC-----CCCTTCCEEECCSSCCSCC-CC-
T ss_pred cccCc----ccCcCCEEECcCCccCccc----CcCCcCCEEECcCCcCCccc-----CCcCcCCEEECCCCccccc-cc-
Confidence 54211 1245666666666555421 01245666666666555421 12 3566666666665542 11
Q ss_pred ccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccCh--hHHHhccCC-------------CCCcEEeecCcc
Q 009672 442 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--AGLRHLKPL-------------KNLRSLTLESCK 506 (529)
Q Consensus 442 ~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~~~~~-------------~~L~~L~l~~~~ 506 (529)
.+++|++|++++| .++.. |. .+++|+.|++++|++.+ ..+..+..+ ++|+.|++++|+
T Consensus 335 --~~~~L~~L~L~~N-~l~~l-p~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~ 407 (454)
T 1jl5_A 335 --LPPRLERLIASFN-HLAEV-PE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP 407 (454)
T ss_dssp --CCTTCCEEECCSS-CCSCC-CC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC---------------------
T ss_pred --cCCcCCEEECCCC-ccccc-cc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCc
Confidence 1355666666666 45432 22 34566666666666555 233333333 556666666666
Q ss_pred CCh
Q 009672 507 VTA 509 (529)
Q Consensus 507 ~~~ 509 (529)
++.
T Consensus 408 l~~ 410 (454)
T 1jl5_A 408 LRE 410 (454)
T ss_dssp ---
T ss_pred CCc
Confidence 553
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.8e-28 Score=247.57 Aligned_cols=310 Identities=18% Similarity=0.126 Sum_probs=203.0
Q ss_pred CCceeEEEecCcccCchhhhhccCCCCCCeEeccCCcccCchhhhhccCCCCCCEEEcCCCCccchhHHHHHhCCCCCCE
Q 009672 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135 (529)
Q Consensus 56 ~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 135 (529)
.++++.++++++.++......++.+++|+.|++++| .+....+..|+.+++|++|++++|. ++...+..|+++++|++
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCC-CCCCCChHHhcCCCCCCEEECCCCc-CCCCCHHHHcCCCCCCE
Confidence 467888888888888776666788888888888887 5777767788888888888888887 56666777788888888
Q ss_pred EeccCccccccccccccCCCcCcEEeccCCcccCccccccccCCCCCCeEEccCCCCChhHHHHhhccCccchhhhhhhh
Q 009672 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSM 215 (529)
Q Consensus 136 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 215 (529)
|++++|......+..++.+++|++|++++ +.+....+..+..+++|+.|++++|.++... +
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~--------------- 188 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSN-NNLERIEDDTFQATTSLQNLQLSSNRLTHVD---L--------------- 188 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---G---------------
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeC-CcCCCCChhhhhcCCcCcEEECcCCCCCCcC---h---------------
Confidence 88888754433334467788888888887 4566666667778888888888888776532 1
Q ss_pred HHHhhhhhhhhcccCCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHH
Q 009672 216 IIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 295 (529)
Q Consensus 216 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 295 (529)
..+++|+.|+++++.+.. +...+.|+.|++++|.+...... ..++|+.|++++|.+.+ +
T Consensus 189 -----------~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~L~~n~l~~--~ 247 (597)
T 3oja_B 189 -----------SLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTD--T 247 (597)
T ss_dssp -----------GGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEEECS---CCSCCCEEECCSSCCCC--C
T ss_pred -----------hhhhhhhhhhcccCcccc-----ccCCchhheeeccCCcccccccc---cCCCCCEEECCCCCCCC--C
Confidence 222777788887776654 23456677777777776543321 12467777777776654 2
Q ss_pred HhhcCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCC
Q 009672 296 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 375 (529)
Q Consensus 296 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 375 (529)
..+..+++|+.|++++|.+....+..+..+++|+.|++++|.++.. +..+..+++|+.|++++|.+... +..+..+++
T Consensus 248 ~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~Ls~N~l~~i-~~~~~~l~~ 325 (597)
T 3oja_B 248 AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLLHV-ERNQPQFDR 325 (597)
T ss_dssp GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEE-ECSSSCCTTCCEEECCSSCCCCC-GGGHHHHTT
T ss_pred hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCC-CcccccCCCCcEEECCCCCCCcc-CcccccCCC
Confidence 3455666666666666666655555666666666666666665543 22234455666666666655532 233444555
Q ss_pred CcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCCh
Q 009672 376 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 412 (529)
Q Consensus 376 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~ 412 (529)
|+.|++++|.+...+ +..+++|+.|++++|.+..
T Consensus 326 L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 326 LENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp CSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEH
T ss_pred CCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCC
Confidence 666666555555431 3344555555555555544
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.95 E-value=4.1e-28 Score=239.05 Aligned_cols=372 Identities=17% Similarity=0.061 Sum_probs=215.3
Q ss_pred hcCCceeEEEecCcccCchhhhhccCCCC-------------CCeEeccCCcccCchhhhhccCCCCCCEEEcCCCCccc
Q 009672 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSN-------------LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120 (529)
Q Consensus 54 ~~~~~l~~l~l~~~~~~~~~~~~l~~~~~-------------L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 120 (529)
...+++++|+++++.+++..+..++.+.+ ++.|++++| .++.... -.++|++|++++|.. +
T Consensus 31 ~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~-~l~~lp~----~~~~L~~L~l~~n~l-~ 104 (454)
T 1jl5_A 31 ENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL-GLSSLPE----LPPHLESLVASCNSL-T 104 (454)
T ss_dssp ---CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTS-CCSCCCS----CCTTCSEEECCSSCC-S
T ss_pred hcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCC-ccccCCC----CcCCCCEEEccCCcC-C
Confidence 34677888888888777777777776665 477888877 3544211 136788888888773 3
Q ss_pred hhHHHHHhCCCCCCEEeccCccccccccccccCCCcCcEEeccCCcccCccccccccCCCCCCeEEccCCCCChhHHHHh
Q 009672 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL 200 (529)
Q Consensus 121 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l 200 (529)
+ +|. .+++|++|++++|.. ...+. ..++|++|++++| .+.+ .+ .++.+++|++|++++|.++...
T Consensus 105 ~-lp~---~~~~L~~L~l~~n~l-~~l~~---~~~~L~~L~L~~n-~l~~-lp-~~~~l~~L~~L~l~~N~l~~lp---- 169 (454)
T 1jl5_A 105 E-LPE---LPQSLKSLLVDNNNL-KALSD---LPPLLEYLGVSNN-QLEK-LP-ELQNSSFLKIIDVDNNSLKKLP---- 169 (454)
T ss_dssp S-CCC---CCTTCCEEECCSSCC-SCCCS---CCTTCCEEECCSS-CCSS-CC-CCTTCTTCCEEECCSSCCSCCC----
T ss_pred c-ccc---ccCCCcEEECCCCcc-CcccC---CCCCCCEEECcCC-CCCC-Cc-ccCCCCCCCEEECCCCcCcccC----
Confidence 3 332 347788888887642 22111 1167888888874 4444 22 5778888888888888776421
Q ss_pred hccCccchhhhhhhhHHHhhhhhhhhcccCCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCc
Q 009672 201 KGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 280 (529)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 280 (529)
.. .++|++|++++|.+... + .+..+++|+.|++++|.+.... . ..++|
T Consensus 170 -~~-------------------------~~~L~~L~L~~n~l~~l-~-~~~~l~~L~~L~l~~N~l~~l~-~---~~~~L 217 (454)
T 1jl5_A 170 -DL-------------------------PPSLEFIAAGNNQLEEL-P-ELQNLPFLTAIYADNNSLKKLP-D---LPLSL 217 (454)
T ss_dssp -CC-------------------------CTTCCEEECCSSCCSSC-C-CCTTCTTCCEEECCSSCCSSCC-C---CCTTC
T ss_pred -CC-------------------------cccccEEECcCCcCCcC-c-cccCCCCCCEEECCCCcCCcCC-C---CcCcc
Confidence 11 15788888888877663 2 5677788888888888776421 1 12478
Q ss_pred cEEEccCCCCChHHHHhhcCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCC
Q 009672 281 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 360 (529)
Q Consensus 281 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 360 (529)
++|++++|.+. ..+ .+..+++|+.|++++|.+.... . .+++|+.|++++|.+.... ...++|+.+++++|
T Consensus 218 ~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~l~-~---~~~~L~~L~l~~N~l~~l~----~~~~~L~~L~ls~N 287 (454)
T 1jl5_A 218 ESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKTLP-D---LPPSLEALNVRDNYLTDLP----ELPQSLTFLDVSEN 287 (454)
T ss_dssp CEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSSCC-S---CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSS
T ss_pred cEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCccc-c---cccccCEEECCCCcccccC----cccCcCCEEECcCC
Confidence 88888888776 334 3667788888888887665422 1 2467888888887766532 12367888888888
Q ss_pred CCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcC-CCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhh
Q 009672 361 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL-TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 439 (529)
Q Consensus 361 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~ 439 (529)
.+..... ..++|+.|++++|.+... ... ++|+.|++++|++++.+. .+++|++|++++|.++....
T Consensus 288 ~l~~l~~----~~~~L~~L~l~~N~l~~i-----~~~~~~L~~L~Ls~N~l~~lp~----~~~~L~~L~L~~N~l~~lp~ 354 (454)
T 1jl5_A 288 IFSGLSE----LPPNLYYLNASSNEIRSL-----CDLPPSLEELNVSNNKLIELPA----LPPRLERLIASFNHLAEVPE 354 (454)
T ss_dssp CCSEESC----CCTTCCEEECCSSCCSEE-----CCCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC
T ss_pred ccCcccC----cCCcCCEEECcCCcCCcc-----cCCcCcCCEEECCCCccccccc----cCCcCCEEECCCCccccccc
Confidence 7765221 125788888888877652 223 478888888887776322 25778888888887775322
Q ss_pred hhccCCCCCCeEecCCCCCCCh--hHHHHHhCC-------------CCCCeeeccCCccChhHHHhccCCCCCcEEeecC
Q 009672 440 KHIKDLSSLTLLNLSQNCNLTD--KTLELISGL-------------TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 504 (529)
Q Consensus 440 ~~~~~~~~L~~L~l~~~~~l~~--~~~~~l~~l-------------~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 504 (529)
.+++|++|++++| .++. ..|..+..+ ++|+.|++++|++.+.+ .+ -++++.|.+.+
T Consensus 355 ----~l~~L~~L~L~~N-~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~--~i--P~sl~~L~~~~ 425 (454)
T 1jl5_A 355 ----LPQNLKQLHVEYN-PLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFP--DI--PESVEDLRMNS 425 (454)
T ss_dssp ----CCTTCCEEECCSS-CCSSCCCCCTTCCEEECCC-------------------------------------------
T ss_pred ----hhhhccEEECCCC-CCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccc--cc--hhhHhheeCcC
Confidence 3577888888887 5665 344444444 88999999999988631 11 13578888988
Q ss_pred ccCChh
Q 009672 505 CKVTAN 510 (529)
Q Consensus 505 ~~~~~~ 510 (529)
|.+...
T Consensus 426 ~~~~~~ 431 (454)
T 1jl5_A 426 ERVVDP 431 (454)
T ss_dssp ------
T ss_pred cccCCc
Confidence 877654
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-27 Score=227.39 Aligned_cols=269 Identities=20% Similarity=0.218 Sum_probs=204.5
Q ss_pred CCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEEC
Q 009672 230 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 309 (529)
Q Consensus 230 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 309 (529)
+.++.|+++++.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+.. .+..+ .++|++|++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~--~~~L~~L~l 128 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-LPEKM--PKTLQELRV 128 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB-CCSSC--CTTCCEEEC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCc-cChhh--cccccEEEC
Confidence 678888998888887666678888899999999888887767778888889999998888763 23222 378888999
Q ss_pred CCCCCChhhhhhhcCCCCCCeEEcCCCccCh--hhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCC
Q 009672 310 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGS--SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 387 (529)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 387 (529)
++|.+.......+..+++|+.|++++|.+.. ..+..+..+++|+.|++++|.+...... + .++|++|++++|.+.
T Consensus 129 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~-~--~~~L~~L~l~~n~l~ 205 (330)
T 1xku_A 129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG-L--PPSLTELHLDGNKIT 205 (330)
T ss_dssp CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSS-C--CTTCSEEECTTSCCC
T ss_pred CCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcc-c--cccCCEEECCCCcCC
Confidence 8888887777778888889999988888764 3345667788888888888887764322 2 268888888888888
Q ss_pred HHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHH
Q 009672 388 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 467 (529)
Q Consensus 388 ~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l 467 (529)
...+..+..+++|+.|++++|.++...+..+..+++|++|++++|.++.. +..+..+++|++|++++| .++...+..+
T Consensus 206 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l-p~~l~~l~~L~~L~l~~N-~i~~~~~~~f 283 (330)
T 1xku_A 206 KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV-PGGLADHKYIQVVYLHNN-NISAIGSNDF 283 (330)
T ss_dssp EECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSC-CTTTTTCSSCCEEECCSS-CCCCCCTTSS
T ss_pred ccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccC-ChhhccCCCcCEEECCCC-cCCccChhhc
Confidence 76666777888888888888888887766778888888888888888743 555777888888888888 6777655555
Q ss_pred hC------CCCCCeeeccCCccCh--hHHHhccCCCCCcEEeecCcc
Q 009672 468 SG------LTGLVSLNVSNSRITS--AGLRHLKPLKNLRSLTLESCK 506 (529)
Q Consensus 468 ~~------l~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~ 506 (529)
.. .+.++.|++++|++.. ..+..|..+++++.+++++|+
T Consensus 284 ~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 284 CPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 42 3678888888888764 334667778888888888874
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.94 E-value=7.7e-28 Score=228.54 Aligned_cols=246 Identities=19% Similarity=0.201 Sum_probs=122.0
Q ss_pred CCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEEC
Q 009672 230 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 309 (529)
Q Consensus 230 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 309 (529)
++|++|++++|.+....+..+..+++|++|++++|.+..... .+ .++|++|++++|.+....+..+..+++|+.|++
T Consensus 78 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~-~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l 154 (332)
T 2ft3_A 78 QHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPP-NL--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEM 154 (332)
T ss_dssp TTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCS-SC--CTTCCEEECCSSCCCCCCSGGGSSCSSCCEEEC
T ss_pred CCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCc-cc--cccCCEEECCCCccCccCHhHhCCCccCCEEEC
Confidence 555555555555554444445555555555555555443221 11 134555555555444333333444455555555
Q ss_pred CCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHH
Q 009672 310 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 389 (529)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 389 (529)
.+|.+... ...+..+..+ +|+.|++++|.+..... .+ .++|++|++++|.+...
T Consensus 155 ~~n~l~~~----------------------~~~~~~~~~l-~L~~L~l~~n~l~~l~~-~~--~~~L~~L~l~~n~i~~~ 208 (332)
T 2ft3_A 155 GGNPLENS----------------------GFEPGAFDGL-KLNYLRISEAKLTGIPK-DL--PETLNELHLDHNKIQAI 208 (332)
T ss_dssp CSCCCBGG----------------------GSCTTSSCSC-CCSCCBCCSSBCSSCCS-SS--CSSCSCCBCCSSCCCCC
T ss_pred CCCccccC----------------------CCCcccccCC-ccCEEECcCCCCCccCc-cc--cCCCCEEECCCCcCCcc
Confidence 44444320 0112222333 44444554444443211 11 13455555555555544
Q ss_pred HHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhC
Q 009672 390 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 469 (529)
Q Consensus 390 ~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~ 469 (529)
.+..+..+++|+.|++++|.++...+..+..+++|++|++++|.++.. +..+..+++|++|++++| .++...+..+..
T Consensus 209 ~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l-p~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~ 286 (332)
T 2ft3_A 209 ELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRV-PAGLPDLKLLQVVYLHTN-NITKVGVNDFCP 286 (332)
T ss_dssp CTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBC-CTTGGGCTTCCEEECCSS-CCCBCCTTSSSC
T ss_pred CHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeec-ChhhhcCccCCEEECCCC-CCCccChhHccc
Confidence 334445555555555555555555444555556666666666655532 334555566666666666 455544443332
Q ss_pred ------CCCCCeeeccCCccC--hhHHHhccCCCCCcEEeecCcc
Q 009672 470 ------LTGLVSLNVSNSRIT--SAGLRHLKPLKNLRSLTLESCK 506 (529)
Q Consensus 470 ------l~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~ 506 (529)
.+.|+.|++++|++. ...+.++..+++|+.+++++|+
T Consensus 287 ~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 287 VGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 355777777777765 3444566777777777777763
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-26 Score=219.96 Aligned_cols=245 Identities=18% Similarity=0.186 Sum_probs=166.1
Q ss_pred CCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEEC
Q 009672 230 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 309 (529)
Q Consensus 230 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 309 (529)
++|++|++++|.+....+..+..+++|++|++++|.+..... .+ .++|++|++++|.+....+..+..+++|+.|++
T Consensus 76 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~-~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 152 (330)
T 1xku_A 76 KNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPE-KM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVEL 152 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCS-SC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccCh-hh--cccccEEECCCCcccccCHhHhcCCccccEEEC
Confidence 666666666666655545556666666666666666553221 11 256777777777766555556667777777777
Q ss_pred CCCCCCh--hhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCC
Q 009672 310 DSCGIGD--EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 387 (529)
Q Consensus 310 ~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 387 (529)
++|.+.. ..+..+..+++|+.|++++|.++..... ..++|+.|++++|.+....+..+..+++|+.|++++|.+.
T Consensus 153 ~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~---~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 229 (330)
T 1xku_A 153 GTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG---LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 229 (330)
T ss_dssp CSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSS---CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCC
T ss_pred CCCcCCccCcChhhccCCCCcCEEECCCCccccCCcc---ccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCc
Confidence 7776643 3345566777777777777776543221 1267888888888877766677777888888888888887
Q ss_pred HHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccC------CCCCCeEecCCCCCCCh
Q 009672 388 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD------LSSLTLLNLSQNCNLTD 461 (529)
Q Consensus 388 ~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~------~~~L~~L~l~~~~~l~~ 461 (529)
...+..+..+++|+.|++++|.++.. +..+..+++|++|++++|+++......+.. .+.++.+++++|+ +..
T Consensus 230 ~~~~~~~~~l~~L~~L~L~~N~l~~l-p~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~-~~~ 307 (330)
T 1xku_A 230 AVDNGSLANTPHLRELHLNNNKLVKV-PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP-VQY 307 (330)
T ss_dssp EECTTTGGGSTTCCEEECCSSCCSSC-CTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSS-SCG
T ss_pred eeChhhccCCCCCCEEECCCCcCccC-ChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCc-ccc
Confidence 76555677788888888888887754 445677888888888888888776665532 3678889999884 432
Q ss_pred --hHHHHHhCCCCCCeeeccCCc
Q 009672 462 --KTLELISGLTGLVSLNVSNSR 482 (529)
Q Consensus 462 --~~~~~l~~l~~L~~L~l~~~~ 482 (529)
..+..+..++.++.+++++|+
T Consensus 308 ~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 308 WEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp GGSCGGGGTTCCCGGGEEC----
T ss_pred cccCccccccccceeEEEecccC
Confidence 345677788889999988874
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-26 Score=219.72 Aligned_cols=245 Identities=20% Similarity=0.214 Sum_probs=166.1
Q ss_pred CCCEEeccCccccccccccccCCCcCcEEeccCCcccCccccccccCCCCCCeEEccCCCCChhHHHHhhccCccchhhh
Q 009672 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFI 211 (529)
Q Consensus 132 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~ 211 (529)
+++.++++++. +...+..+ .++|+.|++++ +.+....+..+..+++|++|++++|.++...+..+..+
T Consensus 34 ~l~~l~~~~~~-l~~ip~~~--~~~l~~L~l~~-n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-------- 101 (332)
T 2ft3_A 34 HLRVVQCSDLG-LKAVPKEI--SPDTTLLDLQN-NDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPL-------- 101 (332)
T ss_dssp ETTEEECCSSC-CSSCCSCC--CTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTC--------
T ss_pred cCCEEECCCCC-ccccCCCC--CCCCeEEECCC-CcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCc--------
Confidence 68999998874 33444333 37999999999 45776667789999999999999999987655555444
Q ss_pred hhhhHHHhhhhhhhhcccCCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCC
Q 009672 212 LCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 291 (529)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 291 (529)
++|++|++++|.+.... ..+ .++|++|++++|.+....+..+..+++|++|++++|.+.
T Consensus 102 ------------------~~L~~L~L~~n~l~~l~-~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 160 (332)
T 2ft3_A 102 ------------------RKLQKLYISKNHLVEIP-PNL--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE 160 (332)
T ss_dssp ------------------TTCCEEECCSSCCCSCC-SSC--CTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCB
T ss_pred ------------------CCCCEEECCCCcCCccC-ccc--cccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccc
Confidence 99999999999887532 222 279999999999998877777889999999999999886
Q ss_pred h--HHHHhhcCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhh
Q 009672 292 D--ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 369 (529)
Q Consensus 292 ~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 369 (529)
. ..+..+..+ +|+.|++++|.+..... .+ .++|+.|++++|.+....+..+..+++|+.|++++|.+....+..
T Consensus 161 ~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~-~~--~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~ 236 (332)
T 2ft3_A 161 NSGFEPGAFDGL-KLNYLRISEAKLTGIPK-DL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGS 236 (332)
T ss_dssp GGGSCTTSSCSC-CCSCCBCCSSBCSSCCS-SS--CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTG
T ss_pred cCCCCcccccCC-ccCEEECcCCCCCccCc-cc--cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhH
Confidence 3 234445555 78888888876654221 11 256666666666665555455555666666666666555544444
Q ss_pred hcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHH
Q 009672 370 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 414 (529)
Q Consensus 370 l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~ 414 (529)
+..+++|+.|++++|.+... +..+..+++|+.|++++|.++..+
T Consensus 237 ~~~l~~L~~L~L~~N~l~~l-p~~l~~l~~L~~L~l~~N~l~~~~ 280 (332)
T 2ft3_A 237 LSFLPTLRELHLDNNKLSRV-PAGLPDLKLLQVVYLHTNNITKVG 280 (332)
T ss_dssp GGGCTTCCEEECCSSCCCBC-CTTGGGCTTCCEEECCSSCCCBCC
T ss_pred hhCCCCCCEEECCCCcCeec-ChhhhcCccCCEEECCCCCCCccC
Confidence 55555555555555555432 223444444445544444444433
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.93 E-value=8.9e-27 Score=218.70 Aligned_cols=249 Identities=17% Similarity=0.109 Sum_probs=162.0
Q ss_pred CceeEEEecCcccCc--hhhhhccCCCCCCeEeccCCcccCchhhhhccCCCCCCEEEcCCCCccchhHHHHHhCCCCCC
Q 009672 57 SSLLSVDLSGSDVTD--SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134 (529)
Q Consensus 57 ~~l~~l~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 134 (529)
.++++|+++++.+++ ..+..++++++|++|++++++.+....+..|+++++|++|++++|. +++..|..|.++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN-VSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEEC-CEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCe-eCCcCCHHHhCCCCCC
Confidence 679999999999988 7788899999999999996335666667888899999999999887 5667777888888888
Q ss_pred EEeccCccccccccccccCCCcCcEEeccCCcccCccccccccCCC-CCCeEEccCCCCChhHHHHhhccCccchhhhhh
Q 009672 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT-NLKSLQISCSKVTDSGIAYLKGLSISSVIFILC 213 (529)
Q Consensus 135 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~ 213 (529)
+|++++|......+..+..+++|++|++++ +.+.+..+..+..++ +|++|++++|.++...+..+..+
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l---------- 197 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDG-NRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL---------- 197 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCS-SCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC----------
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcC-CcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCC----------
Confidence 888888765445566677778888888877 445555566666666 77777777776654333333322
Q ss_pred hhHHHhhhhhhhhcccCCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChH
Q 009672 214 SMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293 (529)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 293 (529)
+ |+.|++++|.+....+..+..+++|+.|++++|.+....+. +..+++|++|++++|.+.+.
T Consensus 198 ----------------~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~ 259 (313)
T 1ogq_A 198 ----------------N-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGT 259 (313)
T ss_dssp ----------------C-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEEC
T ss_pred ----------------c-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCc
Confidence 3 66666666665554455555566666666666655443322 34445555555555555444
Q ss_pred HHHhhcCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCC
Q 009672 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 336 (529)
Q Consensus 294 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 336 (529)
.|..+..+++|+.|++++|.+....+.. ..+++|+.+++.+|
T Consensus 260 ~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N 301 (313)
T 1ogq_A 260 LPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANN 301 (313)
T ss_dssp CCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSS
T ss_pred CChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCC
Confidence 4444555555555555555443322222 33444444444444
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-27 Score=223.28 Aligned_cols=248 Identities=19% Similarity=0.172 Sum_probs=139.4
Q ss_pred CCCeEecCCCcCCh--hhhHhhhcCCCccEEEccC-CCCChHHHHhhcCCCCCCEEECCCCCCChhhhhhhcCCCCCCeE
Q 009672 255 SLFYLNLNRCQLSD--DGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 331 (529)
Q Consensus 255 ~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 331 (529)
+++.|+++++.+.+ ..+..+..+++|++|++++ +.+.+..|..+..+++|++|++++|.+....+..+..+++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 34444444444433 3333444444444444442 44433334444444555555555544443344444455555555
Q ss_pred EcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCC-CCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCC
Q 009672 332 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS-SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 410 (529)
Q Consensus 332 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l 410 (529)
++++|.+....+..+..+++|+.|++++|.+....+..+..++ +|+.|++++|.+....+..+..++ |+.|++++|.+
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l 209 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML 209 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEE
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcc
Confidence 5555555444444455555555555555555544444555554 566666666665544444555554 66666666666
Q ss_pred ChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccChhHHHh
Q 009672 411 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH 490 (529)
Q Consensus 411 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 490 (529)
++..+..+..+++|+.|++++|.++...+. +..+++|++|++++| .++...|..+..+++|+.|++++|++++..+..
T Consensus 210 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNN-RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp EECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSS-CCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred cCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCC-cccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence 655555666667777777777766654333 555677777777777 666556666677777777777777776554433
Q ss_pred ccCCCCCcEEeecCcc
Q 009672 491 LKPLKNLRSLTLESCK 506 (529)
Q Consensus 491 ~~~~~~L~~L~l~~~~ 506 (529)
..+++|+.+++++|+
T Consensus 288 -~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 288 -GNLQRFDVSAYANNK 302 (313)
T ss_dssp -TTGGGSCGGGTCSSS
T ss_pred -ccccccChHHhcCCC
Confidence 566777777777775
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=6.2e-26 Score=217.34 Aligned_cols=279 Identities=18% Similarity=0.205 Sum_probs=225.3
Q ss_pred ccCCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEE
Q 009672 228 SLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 307 (529)
Q Consensus 228 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 307 (529)
.|+.....+.+++.+.... ..+ .++|+.|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|
T Consensus 29 ~C~~~~~c~~~~~~l~~iP-~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 29 SCDRNGICKGSSGSLNSIP-SGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp EECTTSEEECCSTTCSSCC-TTC--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCeEeeCCCCCccccc-ccc--cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence 3455566777777776542 222 3589999999999887766678888999999999998887666678889999999
Q ss_pred ECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhh-hhccCCCCCCeEeccCC-CCChhhhhhhcCCCCCcEEECCCCC
Q 009672 308 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL-RHLSGLTNLESINLSFT-GISDGSLRKLAGLSSLKSLNLDARQ 385 (529)
Q Consensus 308 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~~~ 385 (529)
++++|.+.......+..+++|++|++++|.+..... ..+..+++|+.|++++| .+....+..+..+++|++|++++|.
T Consensus 106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 185 (353)
T 2z80_A 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD 185 (353)
T ss_dssp ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence 999998887666668889999999999998876554 46778899999999988 4776666778888999999999999
Q ss_pred CCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhc---cCCCCCCeEecCCCCCCChh
Q 009672 386 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI---KDLSSLTLLNLSQNCNLTDK 462 (529)
Q Consensus 386 ~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~---~~~~~L~~L~l~~~~~l~~~ 462 (529)
+....+..++.+++|+.|++++|.++..+...+..+++|++|++++|.+++..+..+ ...+.++.++++++ .+.+.
T Consensus 186 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~-~l~~~ 264 (353)
T 2z80_A 186 LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNV-KITDE 264 (353)
T ss_dssp CCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESC-BCCHH
T ss_pred cCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccc-cccCc
Confidence 888767778888999999999999988777777788999999999998887654433 23567888899888 67764
Q ss_pred ----HHHHHhCCCCCCeeeccCCccChhHHHhccCCCCCcEEeecCccCChh
Q 009672 463 ----TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 510 (529)
Q Consensus 463 ----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 510 (529)
++..+..+++|+.|++++|.+.......+..+++|++|++++|+++..
T Consensus 265 ~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 265 SLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp HHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred chhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 566788999999999999999976555578899999999999988764
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.1e-24 Score=205.56 Aligned_cols=257 Identities=22% Similarity=0.184 Sum_probs=195.2
Q ss_pred CCceeEEEecCcccCchhhhhccCCCCCCeEeccCCcccCchhhhhccCCCCCCEEEcCCCCccchhHHHHHhCCCCCCE
Q 009672 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135 (529)
Q Consensus 56 ~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 135 (529)
.+++++|+++++.+++.....++.+++|++|++++| .+....+..|..+++|++|++++|. ++...+..+.++++|++
T Consensus 51 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~ 128 (353)
T 2z80_A 51 TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYNY-LSNLSSSWFKPLSSLTF 128 (353)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CSSCCHHHHTTCTTCSE
T ss_pred cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCCc-CCcCCHhHhCCCccCCE
Confidence 357999999999998877778899999999999988 6887777889999999999999998 56666667899999999
Q ss_pred EeccCcccccccc-ccccCCCcCcEEeccCCcccCccccccccCCCCCCeEEccCCCCChhHHHHhhccCccchhhhhhh
Q 009672 136 LDLERCTRIHGGL-VNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCS 214 (529)
Q Consensus 136 L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~ 214 (529)
|++++|....... ..+..+++|++|++++|+.+....+..+..+++|++|++++|.++...+..+..
T Consensus 129 L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~------------ 196 (353)
T 2z80_A 129 LNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKS------------ 196 (353)
T ss_dssp EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTT------------
T ss_pred EECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhc------------
Confidence 9999985443333 467889999999999876677766778888999999999999887654444444
Q ss_pred hHHHhhhhhhhhcccCCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhh---cCCCccEEEccCCCCC
Q 009672 215 MIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS---KIGSLKVLNLGFNEIT 291 (529)
Q Consensus 215 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~---~~~~L~~L~l~~~~~~ 291 (529)
+++|++|+++++.+.......+..+++|+.|++++|.+....+..+. ....++.++++++.+.
T Consensus 197 --------------l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~ 262 (353)
T 2z80_A 197 --------------IQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKIT 262 (353)
T ss_dssp --------------CSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCC
T ss_pred --------------cccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhcccccccccc
Confidence 48999999999988776555566788999999999887764433322 3456777777777766
Q ss_pred hH----HHHhhcCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccCh
Q 009672 292 DE----CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 340 (529)
Q Consensus 292 ~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 340 (529)
+. .+..+..+++|+.|++++|.++......+..+++|+.|++++|++..
T Consensus 263 ~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 263 DESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp HHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccC
Confidence 52 34556677777777777777665444445667777777777776554
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.8e-24 Score=213.44 Aligned_cols=247 Identities=23% Similarity=0.249 Sum_probs=154.9
Q ss_pred CccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEECC
Q 009672 231 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 310 (529)
Q Consensus 231 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 310 (529)
..+.++..+..+... |..+ .++++.|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|+++
T Consensus 44 ~~~~v~c~~~~l~~i-P~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 44 QFSKVICVRKNLREV-PDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp TSCEEECCSCCCSSC-CSCC--CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCCEEEeCCCCcCcC-CCCC--CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 345666666555542 2222 2567777777777766666666677777777777777665555566677777777777
Q ss_pred CCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCC-CCChhhhhhhcCCCCCcEEECCCCCCCHH
Q 009672 311 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT-GISDGSLRKLAGLSSLKSLNLDARQITDT 389 (529)
Q Consensus 311 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 389 (529)
+|.+.......+..+++|+.|++++|.+.......+..+++|+.|+++++ .+.......+.++++|+.|++++|.++..
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 200 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI 200 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc
Confidence 77666655555666777777777777766655555666677777777663 44444444566666677777776666643
Q ss_pred HHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhC
Q 009672 390 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 469 (529)
Q Consensus 390 ~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~ 469 (529)
..+..+++|+.|++++|.++...+..+.++++|++|++++|.++...+..+.++++|++|++++| .++...+..+..
T Consensus 201 --~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~ 277 (440)
T 3zyj_A 201 --PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTP 277 (440)
T ss_dssp --CCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTS-CCCCCCTTTTSS
T ss_pred --cccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCC-CCCccChhHhcc
Confidence 23455566666666666666655555666666666666666666655555666666666666666 555555555555
Q ss_pred CCCCCeeeccCCcc
Q 009672 470 LTGLVSLNVSNSRI 483 (529)
Q Consensus 470 l~~L~~L~l~~~~~ 483 (529)
+++|+.|++++|++
T Consensus 278 l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 278 LHHLERIHLHHNPW 291 (440)
T ss_dssp CTTCCEEECCSSCE
T ss_pred ccCCCEEEcCCCCc
Confidence 66666666666654
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2.2e-24 Score=213.69 Aligned_cols=246 Identities=23% Similarity=0.266 Sum_probs=138.2
Q ss_pred ccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEECCC
Q 009672 232 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 311 (529)
Q Consensus 232 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 311 (529)
...++.++..+... |..+ .++++.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|++|++++
T Consensus 56 ~~~v~c~~~~l~~i-P~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLSEV-PQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCSSC-CSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcCcc-CCCC--CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 45566555555432 2111 24666677766666665555666666666666666666654445566666666666666
Q ss_pred CCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCC-CCChhhhhhhcCCCCCcEEECCCCCCCHHH
Q 009672 312 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT-GISDGSLRKLAGLSSLKSLNLDARQITDTG 390 (529)
Q Consensus 312 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 390 (529)
|.+.......+..+++|+.|++++|.+.......+..+++|+.|+++++ .+.......+.++++|+.|++++|.+...
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~- 211 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM- 211 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-
Confidence 6666555555566666666666666665554455556666666666653 34443344455556666666666655543
Q ss_pred HHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhCC
Q 009672 391 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 470 (529)
Q Consensus 391 ~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l 470 (529)
..+..+++|+.|++++|.++...+..+.++++|+.|++++|.++...+..+.++++|++|++++| .++...+..+..+
T Consensus 212 -~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l 289 (452)
T 3zyi_A 212 -PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPL 289 (452)
T ss_dssp -CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTC
T ss_pred -ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC-cCCccChHHhccc
Confidence 23444555555555555555554555555555555555555555554445555555555555555 4544444444445
Q ss_pred CCCCeeeccCCcc
Q 009672 471 TGLVSLNVSNSRI 483 (529)
Q Consensus 471 ~~L~~L~l~~~~~ 483 (529)
++|+.|++++|++
T Consensus 290 ~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 290 RYLVELHLHHNPW 302 (452)
T ss_dssp TTCCEEECCSSCE
T ss_pred cCCCEEEccCCCc
Confidence 5555555555543
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.7e-24 Score=200.78 Aligned_cols=224 Identities=21% Similarity=0.229 Sum_probs=112.4
Q ss_pred cEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEECCCC
Q 009672 233 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 312 (529)
Q Consensus 233 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 312 (529)
+.++.++..+.... . ...++|+.|+++++.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~~ip-~--~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQAVP-V--GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSSCC-T--TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcccCC-c--CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 45555555444321 1 12345566666665555544444555555555555555554433444445555555555555
Q ss_pred C-CChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHH
Q 009672 313 G-IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 391 (529)
Q Consensus 313 ~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 391 (529)
. +....+..+..+++|+.|++++|.+... .+..+..+++|++|++++|.+....+
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------------------------~~~~~~~l~~L~~L~l~~n~l~~~~~ 146 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQEL------------------------GPGLFRGLAALQYLYLQDNALQALPD 146 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCC------------------------CTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEE------------------------CHhHhhCCcCCCEEECCCCcccccCH
Confidence 3 4433334444444555555544444433 33334444444444444444444333
Q ss_pred HHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhCCC
Q 009672 392 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 471 (529)
Q Consensus 392 ~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~ 471 (529)
..++.+++|+.|++++|.++...+..+..+++|++|++++|.+++..+..+..+++|++|++++| .++...+..+..++
T Consensus 147 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~ 225 (285)
T 1ozn_A 147 DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN-NLSALPTEALAPLR 225 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCHHHHTTCT
T ss_pred hHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCC-cCCcCCHHHcccCc
Confidence 33444455555555555555444444455555555555555555554555555555555555555 45554455555555
Q ss_pred CCCeeeccCCccC
Q 009672 472 GLVSLNVSNSRIT 484 (529)
Q Consensus 472 ~L~~L~l~~~~~~ 484 (529)
+|+.|++++|++.
T Consensus 226 ~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 226 ALQYLRLNDNPWV 238 (285)
T ss_dssp TCCEEECCSSCEE
T ss_pred ccCEEeccCCCcc
Confidence 5555555555543
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=7.3e-25 Score=206.28 Aligned_cols=237 Identities=17% Similarity=0.202 Sum_probs=114.7
Q ss_pred cCCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEE
Q 009672 229 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 308 (529)
Q Consensus 229 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 308 (529)
+++|++|++++|.+....+..+..+++|+.|++++|.+....+ +..+++|++|++++|.+.+ +...++|+.|+
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~-----l~~~~~L~~L~ 105 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-----LLVGPSIETLH 105 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEE-----EEECTTCCEEE
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccc-----ccCCCCcCEEE
Confidence 3455555555555555444455555555555555555543222 4445555555555554432 12235555555
Q ss_pred CCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhc-CCCCCcEEECCCCCCC
Q 009672 309 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA-GLSSLKSLNLDARQIT 387 (529)
Q Consensus 309 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~ 387 (529)
+++|.+..... ..+++|+.|++++|.++...+..+..+++|+.|++++|.+....+..+. .+++|++|++++|.++
T Consensus 106 l~~n~l~~~~~---~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 182 (317)
T 3o53_A 106 AANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (317)
T ss_dssp CCSSCCSEEEE---CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CCCCccCCcCc---cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc
Confidence 55554443322 1234555555555555544444444455555555555555544333332 3455555555555554
Q ss_pred HHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCC-hhHHHH
Q 009672 388 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT-DKTLEL 466 (529)
Q Consensus 388 ~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~-~~~~~~ 466 (529)
.. .....+++|+.|++++|.++..++. +..+++|++|++++|.++.. +..+..+++|+.|++++| .+. ...+..
T Consensus 183 ~~--~~~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~~l-~~~~~~l~~L~~L~l~~N-~~~~~~~~~~ 257 (317)
T 3o53_A 183 DV--KGQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLI-EKALRFSQNLEHFDLRGN-GFHCGTLRDF 257 (317)
T ss_dssp EE--ECCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEE-CTTCCCCTTCCEEECTTC-CCBHHHHHHH
T ss_pred cc--ccccccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCcccch-hhHhhcCCCCCEEEccCC-CccCcCHHHH
Confidence 43 1112345555555555555544332 44455555555555555432 333444455555555555 333 334444
Q ss_pred HhCCCCCCeeeccC
Q 009672 467 ISGLTGLVSLNVSN 480 (529)
Q Consensus 467 l~~l~~L~~L~l~~ 480 (529)
+..+++|+.|++++
T Consensus 258 ~~~~~~L~~l~l~~ 271 (317)
T 3o53_A 258 FSKNQRVQTVAKQT 271 (317)
T ss_dssp HHTCHHHHHHHHHH
T ss_pred HhccccceEEECCC
Confidence 55555555555543
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-24 Score=203.97 Aligned_cols=247 Identities=21% Similarity=0.222 Sum_probs=157.7
Q ss_pred cEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHH--HHhhcCCCCCCEEECC
Q 009672 233 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC--LVHLKGLTNLESLNLD 310 (529)
Q Consensus 233 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~ 310 (529)
+.++.++..+.... .. ..++|+.|++++|.+.......+..+++|++|++++|.+.... +..+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~~ip-~~--~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLTSVP-TG--IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCSSCC-SC--CCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcccCC-CC--CCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 46777776665432 11 2357888888888877655555677788888888887775321 3445567788888888
Q ss_pred CCCCChhhhhhhcCCCCCCeEEcCCCccChhhh-hhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCH-
Q 009672 311 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL-RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD- 388 (529)
Q Consensus 311 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~- 388 (529)
+|.+.. .+..+..+++|+.|++++|.+..... ..+..+++|+.|++++|.+....+..+..+++|++|++++|.+..
T Consensus 87 ~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 165 (306)
T 2z66_A 87 FNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 165 (306)
T ss_dssp SCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG
T ss_pred CCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc
Confidence 776654 23346667778888877777665443 456667777777777777666555556666777777777776654
Q ss_pred HHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHh
Q 009672 389 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 468 (529)
Q Consensus 389 ~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~ 468 (529)
..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++| .++...+..+.
T Consensus 166 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~ 244 (306)
T 2z66_A 166 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQ 244 (306)
T ss_dssp EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTS-CCCBCSSSSCC
T ss_pred cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCC-CCcccCHHHHH
Confidence 22344556666666666666666655555666666666666666666555545555666666666666 55555555555
Q ss_pred CCC-CCCeeeccCCccC
Q 009672 469 GLT-GLVSLNVSNSRIT 484 (529)
Q Consensus 469 ~l~-~L~~L~l~~~~~~ 484 (529)
.++ +|+.|++++|++.
T Consensus 245 ~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 245 HFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp CCCTTCCEEECTTCCEE
T ss_pred hhhccCCEEEccCCCee
Confidence 553 6666666666654
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=6.7e-24 Score=196.79 Aligned_cols=225 Identities=20% Similarity=0.228 Sum_probs=190.9
Q ss_pred cEEEccCCCCChHHHHhhcCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCC
Q 009672 281 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 360 (529)
Q Consensus 281 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 360 (529)
.+++.+++.+.. .|. ...+++++|+++++.+....+..+..+++|+.|++++|.++...+..+..+++|+.|++++|
T Consensus 14 ~~~~c~~~~l~~-ip~--~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQA-VPV--GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSS-CCT--TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCccc-CCc--CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 456666555543 222 22467888888888777766667778888888888888887776677788889999999988
Q ss_pred C-CChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhh
Q 009672 361 G-ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 439 (529)
Q Consensus 361 ~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~ 439 (529)
. +....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.++...+..+..+++|++|++++|.++....
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 170 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence 6 777667788889999999999999988766778899999999999999998877778999999999999999998877
Q ss_pred hhccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccChhHHHhccCCCCCcEEeecCccCCh
Q 009672 440 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 509 (529)
Q Consensus 440 ~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 509 (529)
..+..+++|++|++++| .++...+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|+++.
T Consensus 171 ~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 171 RAFRGLHSLDRLLLHQN-RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp TTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred HHhcCccccCEEECCCC-cccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 77889999999999999 8888888889999999999999999999888889999999999999998864
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.90 E-value=7.5e-24 Score=209.85 Aligned_cols=226 Identities=21% Similarity=0.216 Sum_probs=200.5
Q ss_pred CCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEEC
Q 009672 230 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 309 (529)
Q Consensus 230 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 309 (529)
++++.|+++++.+....+..|..+++|+.|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 78999999999998877788999999999999999998887788889999999999999998766666888999999999
Q ss_pred CCCCCChhhhhhhcCCCCCCeEEcCCC-ccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCH
Q 009672 310 DSCGIGDEGLVNLTGLCNLKCLELSDT-QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388 (529)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 388 (529)
++|.+.......+..+++|+.|+++++ .+.......+..+++|+.|++++|.+... ..+..+++|+.|++++|.+..
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~ 232 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHFPE 232 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC--CCCTTCTTCCEEECTTSCCSE
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc--ccccccccccEEECcCCcCcc
Confidence 999988777778889999999999985 45555556678899999999999988864 357788999999999999998
Q ss_pred HHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCC
Q 009672 389 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 457 (529)
Q Consensus 389 ~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~ 457 (529)
..+..+..+++|+.|++++|+++...+..+..+++|+.|++++|.++......+..+++|++|++++|+
T Consensus 233 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 233 IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 877888999999999999999999888888999999999999999998877778889999999999995
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=7.8e-24 Score=208.94 Aligned_cols=226 Identities=21% Similarity=0.240 Sum_probs=201.9
Q ss_pred CCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEEC
Q 009672 230 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 309 (529)
Q Consensus 230 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 309 (529)
++++.|+++++.+....+..|.++++|+.|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 78999999999998877788999999999999999999888788899999999999999998666667889999999999
Q ss_pred CCCCCChhhhhhhcCCCCCCeEEcCCC-ccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCH
Q 009672 310 DSCGIGDEGLVNLTGLCNLKCLELSDT-QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388 (529)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 388 (529)
++|.+.......+..+++|+.|+++++ .+.......+..+++|+.|++++|.+.... .+..+++|+.|++++|.+..
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~Ls~N~l~~ 221 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP--NLTPLIKLDELDLSGNHLSA 221 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC--CCTTCSSCCEEECTTSCCCE
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc--ccCCCcccCEEECCCCccCc
Confidence 999998877778889999999999985 455555567888999999999999988643 47788999999999999998
Q ss_pred HHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCC
Q 009672 389 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 457 (529)
Q Consensus 389 ~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~ 457 (529)
..+..+..+++|+.|++++|+++...+..+.++++|+.|++++|.++......+..+++|+.|++++|+
T Consensus 222 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 222 IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp ECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred cChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 877888899999999999999999888889999999999999999998877788889999999999995
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.90 E-value=5.4e-23 Score=195.79 Aligned_cols=260 Identities=19% Similarity=0.229 Sum_probs=164.1
Q ss_pred CCcHHHHHHHHHHhhhcccCChhhhhhhccCccceeccCCCCCCCHHHHHHHHhcCCceeEEEecCcccCchhhhhccCC
Q 009672 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDC 80 (529)
Q Consensus 1 ~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~ 80 (529)
.||.|++..||.++.... +..+..++..|...... ...+++++++++.+.+ ..+..+
T Consensus 11 ~LP~eil~~If~~L~~~d-------------------~~~~~~vc~~W~~~~~~-~~~~~~l~l~~~~~~~---~~~~~~ 67 (336)
T 2ast_B 11 SLPDELLLGIFSCLCLPE-------------------LLKVSGVCKRWYRLASD-ESLWQTLDLTGKNLHP---DVTGRL 67 (336)
T ss_dssp SSCHHHHHHHHTTSCHHH-------------------HHHTTSSCHHHHHHHTC-STTSSEEECTTCBCCH---HHHHHH
T ss_pred hCCHHHHHHHHHhCCHHH-------------------HHHHHHHHHHHHHHhcC-chhheeeccccccCCH---HHHHhh
Confidence 489999999998774321 11123457778776653 5669999999988763 345555
Q ss_pred --CCCCeEeccCCcccCchhhhhccCCCCCCEEEcCCCCccchh-HHHHHhCCCCCCEEeccCccccccccccccCCCcC
Q 009672 81 --SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQ-GMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 157 (529)
Q Consensus 81 --~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 157 (529)
+.++.|++++| .+....+. +..+++|++|++++|. +++. .+..+..+++|++|++++|......+..++.+++|
T Consensus 68 ~~~~l~~L~l~~n-~l~~~~~~-~~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L 144 (336)
T 2ast_B 68 LSQGVIAFRCPRS-FMDQPLAE-HFSPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNL 144 (336)
T ss_dssp HHTTCSEEECTTC-EECSCCCS-CCCCBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTC
T ss_pred hhccceEEEcCCc-cccccchh-hccCCCCCEEEccCCC-cCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCC
Confidence 78999999987 46554333 5578999999999998 5554 78888899999999999885444455566677777
Q ss_pred cEEeccCCcccCcc-ccccccCCCCCCeEEccCC-CCChhHH-HHhhccCccchhhhhhhhHHHhhhhhhhhcccC-Ccc
Q 009672 158 ESLNIKWCNCITDS-DMKPLSGLTNLKSLQISCS-KVTDSGI-AYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQ-KLT 233 (529)
Q Consensus 158 ~~L~l~~~~~~~~~-~~~~l~~~~~L~~L~l~~~-~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~L~ 233 (529)
++|++++|..+++. .+..+..+++|++|++++| .+++... ..+.. ++ +|+
T Consensus 145 ~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~--------------------------l~~~L~ 198 (336)
T 2ast_B 145 VRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAH--------------------------VSETIT 198 (336)
T ss_dssp SEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHH--------------------------SCTTCC
T ss_pred CEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHh--------------------------cccCCC
Confidence 77777776555543 2233556667777777666 6655322 22222 25 666
Q ss_pred EEEccCC--CCC-HHHHHHhhcCCCCCeEecCCCc-CChhhhHhhhcCCCccEEEccCC-CCChHHHHhhcCCCCCCEEE
Q 009672 234 LLNLEGC--PVT-AACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFN-EITDECLVHLKGLTNLESLN 308 (529)
Q Consensus 234 ~L~l~~~--~~~-~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~ 308 (529)
+|++++| .+. ...+..+..+++|+.|++++|. ++...+..+..+++|++|++++| .+.......+..+++|+.|+
T Consensus 199 ~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ 278 (336)
T 2ast_B 199 QLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQ 278 (336)
T ss_dssp EEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEE
T ss_pred EEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEe
Confidence 6666666 344 2334445556666666666665 44444445555566666666555 23222222344455555555
Q ss_pred CCCC
Q 009672 309 LDSC 312 (529)
Q Consensus 309 l~~~ 312 (529)
+.+|
T Consensus 279 l~~~ 282 (336)
T 2ast_B 279 VFGI 282 (336)
T ss_dssp CTTS
T ss_pred ccCc
Confidence 5555
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.8e-24 Score=202.27 Aligned_cols=261 Identities=16% Similarity=0.173 Sum_probs=208.8
Q ss_pred CCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEEC
Q 009672 230 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 309 (529)
Q Consensus 230 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 309 (529)
..++..+++.+.+.......+..+++|+.|++++|.+....+..+..+++|++|++++|.+.+..+ +..+++|++|++
T Consensus 10 ~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~L 87 (317)
T 3o53_A 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDL 87 (317)
T ss_dssp TEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEEC
T ss_pred CceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEEC
Confidence 567777888887777666667778899999999999988877888899999999999998875443 788999999999
Q ss_pred CCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHH
Q 009672 310 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 389 (529)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 389 (529)
++|.+... ...++|+.|++++|.+..... ..+++|+.|++++|.+....+..+..+++|+.|++++|.+...
T Consensus 88 s~n~l~~l-----~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 159 (317)
T 3o53_A 88 NNNYVQEL-----LVGPSIETLHAANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV 159 (317)
T ss_dssp CSSEEEEE-----EECTTCCEEECCSSCCSEEEE---CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE
T ss_pred cCCccccc-----cCCCCcCEEECCCCccCCcCc---cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc
Confidence 99876542 245899999999998876543 3467899999999999887777788888999999999988876
Q ss_pred HHHHH-hcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHh
Q 009672 390 GLAAL-TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 468 (529)
Q Consensus 390 ~~~~l-~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~ 468 (529)
.+..+ ..+++|+.|++++|.++.... ...+++|++|++++|.++...+. +..+++|++|++++| .++. ++..+.
T Consensus 160 ~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N-~l~~-l~~~~~ 234 (317)
T 3o53_A 160 NFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNN-KLVL-IEKALR 234 (317)
T ss_dssp EGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTS-CCCE-ECTTCC
T ss_pred cHHHHhhccCcCCEEECCCCcCccccc--ccccccCCEEECCCCcCCcchhh-hcccCcccEEECcCC-cccc-hhhHhh
Confidence 55555 367889999999998887632 23478899999999988876443 777889999999998 7775 455677
Q ss_pred CCCCCCeeeccCCccC-hhHHHhccCCCCCcEEeecCc
Q 009672 469 GLTGLVSLNVSNSRIT-SAGLRHLKPLKNLRSLTLESC 505 (529)
Q Consensus 469 ~l~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~ 505 (529)
.+++|+.|++++|++. +..+..+..+++|+.++++++
T Consensus 235 ~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 235 FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp CCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence 7889999999999888 555667778888888888755
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.9e-24 Score=202.76 Aligned_cols=261 Identities=21% Similarity=0.241 Sum_probs=209.6
Q ss_pred CCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhh--hHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEE
Q 009672 230 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG--CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 307 (529)
Q Consensus 230 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 307 (529)
+++++|+++++.+.......|..+++|+.|++++|.+.... +..+..+++|++|++++|.+.. .+..+..+++|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE-EEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc-ChhhcCCCCCCCEE
Confidence 68999999999988765556789999999999999987542 3555678999999999998874 45558889999999
Q ss_pred ECCCCCCChhhh-hhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCCh-hhhhhhcCCCCCcEEECCCCC
Q 009672 308 NLDSCGIGDEGL-VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD-GSLRKLAGLSSLKSLNLDARQ 385 (529)
Q Consensus 308 ~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~ 385 (529)
++++|.+..... ..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.+ ..+..+..+++|+.|++++|.
T Consensus 107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 186 (306)
T 2z66_A 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186 (306)
T ss_dssp ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC
Confidence 999997766544 567889999999999999887777778889999999999998876 456678889999999999999
Q ss_pred CCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCC-CCCeEecCCCCCCChhH-
Q 009672 386 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS-SLTLLNLSQNCNLTDKT- 463 (529)
Q Consensus 386 ~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~-~L~~L~l~~~~~l~~~~- 463 (529)
+....+..+..+++|+.|++++|.++...+..+..+++|++|++++|.+.+..+..+..++ +|++|++++| .++...
T Consensus 187 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N-~~~~~c~ 265 (306)
T 2z66_A 187 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN-DFACTCE 265 (306)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTC-CEECSGG
T ss_pred cCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCC-CeecccC
Confidence 9987677888999999999999999988777788999999999999999998888888885 9999999999 444221
Q ss_pred -HHHHhCCCCCCeeeccCCccChhHHHhcc
Q 009672 464 -LELISGLTGLVSLNVSNSRITSAGLRHLK 492 (529)
Q Consensus 464 -~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 492 (529)
......+...+.+.+..+.+.-..|..+.
T Consensus 266 ~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~ 295 (306)
T 2z66_A 266 HQSFLQWIKDQRQLLVEVERMECATPSDKQ 295 (306)
T ss_dssp GHHHHHHHHHTGGGBSCGGGCBEEESGGGT
T ss_pred hHHHHHHHHhhhhhhccccccccCCchhhC
Confidence 11111123444455555555444444443
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.89 E-value=2.5e-22 Score=194.79 Aligned_cols=237 Identities=20% Similarity=0.221 Sum_probs=113.5
Q ss_pred HHhhcCCCCCeEecCCCcCChhhhHh----hhcCCCccEEEccCCCC---ChHHHHh-------hcCCCCCCEEECCCCC
Q 009672 248 DSLSALGSLFYLNLNRCQLSDDGCEK----FSKIGSLKVLNLGFNEI---TDECLVH-------LKGLTNLESLNLDSCG 313 (529)
Q Consensus 248 ~~~~~~~~L~~L~l~~~~~~~~~~~~----l~~~~~L~~L~l~~~~~---~~~~~~~-------~~~~~~L~~L~l~~~~ 313 (529)
..+..+++|+.|++++|.+....+.. +..+++|++|++++|.+ .+..|.. +..+++|++|++++|.
T Consensus 26 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 105 (386)
T 2ca6_A 26 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA 105 (386)
T ss_dssp HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred HHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc
Confidence 34556677777777777776654433 34566777777766532 2222222 2456666666666665
Q ss_pred CCh----hhhhhhcCCCCCCeEEcCCCccChhhhhhccC----C---------CCCCeEeccCCCCChhhhh----hhcC
Q 009672 314 IGD----EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG----L---------TNLESINLSFTGISDGSLR----KLAG 372 (529)
Q Consensus 314 ~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~----~---------~~L~~L~l~~~~~~~~~~~----~l~~ 372 (529)
+.. ..+..+..+++|+.|++++|.++...+..+.. + ++|+.|++++|.+++.... .+..
T Consensus 106 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~ 185 (386)
T 2ca6_A 106 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 185 (386)
T ss_dssp CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHh
Confidence 554 23334455566666666666554433322221 2 4555555555555422211 2334
Q ss_pred CCCCcEEECCCCCCCHHH----HH-HHhcCCCCCEEecCCCCCC----hHHHHhhhcCCCCcEEEccCCCCChhhhh---
Q 009672 373 LSSLKSLNLDARQITDTG----LA-ALTSLTGLTHLDLFGARIT----DSGAAYLRNFKNLRSLEICGGGLTDAGVK--- 440 (529)
Q Consensus 373 ~~~L~~L~l~~~~~~~~~----~~-~l~~~~~L~~L~l~~~~l~----~~~~~~~~~~~~L~~L~l~~~~l~~~~~~--- 440 (529)
+++|+.|++++|.+...+ .. .+..+++|+.|++++|.++ ...+..+..+++|++|++++|.+++.+..
T Consensus 186 ~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~ 265 (386)
T 2ca6_A 186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV 265 (386)
T ss_dssp CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH
T ss_pred CCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHH
Confidence 445555555555554321 11 2334445555555555443 22233344444555555555554443222
Q ss_pred -hcc--CCCCCCeEecCCCCCCCh----hHHHHH-hCCCCCCeeeccCCccCh
Q 009672 441 -HIK--DLSSLTLLNLSQNCNLTD----KTLELI-SGLTGLVSLNVSNSRITS 485 (529)
Q Consensus 441 -~~~--~~~~L~~L~l~~~~~l~~----~~~~~l-~~l~~L~~L~l~~~~~~~ 485 (529)
.+. .+++|++|++++| .++. ..+..+ .++++|+.|++++|++++
T Consensus 266 ~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 266 DAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp HHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred HHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence 121 1444555555444 4444 233333 334444444444444443
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.5e-23 Score=195.32 Aligned_cols=222 Identities=21% Similarity=0.229 Sum_probs=130.2
Q ss_pred cCCceeEEEecCcccCchhhhhccCCCCCCeEeccCCcccCchhhhhccCCCCCCEEEcCCCCccchhHHHHHhCCCCCC
Q 009672 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134 (529)
Q Consensus 55 ~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 134 (529)
..+++++|+|+++.++ ..+..++++++|++|++++| .+. ..+..++.+++|++|++++|. ++ .+|..+.++++|+
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n-~l~-~lp~~~~~l~~L~~L~Ls~n~-l~-~lp~~l~~l~~L~ 153 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAA-GLM-ELPDTMQQFAGLETLTLARNP-LR-ALPASIASLNRLR 153 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESS-CCC-CCCSCGGGGTTCSEEEEESCC-CC-CCCGGGGGCTTCC
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCC-Ccc-chhHHHhccCCCCEEECCCCc-cc-cCcHHHhcCcCCC
Confidence 3578999999999988 55666778999999999987 566 446778889999999999987 44 5677888899999
Q ss_pred EEeccCcccccccccccc---------CCCcCcEEeccCCcccCccccccccCCCCCCeEEccCCCCChhHHHHhhccCc
Q 009672 135 KLDLERCTRIHGGLVNLK---------GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSI 205 (529)
Q Consensus 135 ~L~l~~~~~~~~~~~~~~---------~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 205 (529)
+|++++|......+..+. .+++|++|++++| .+. ..+..+..+++|++|++++|.++.... .
T Consensus 154 ~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~-~------ 224 (328)
T 4fcg_A 154 ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIR-SLPASIANLQNLKSLKIRNSPLSALGP-A------ 224 (328)
T ss_dssp EEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCC-CCCGGGGGCTTCCEEEEESSCCCCCCG-G------
T ss_pred EEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcC-cchHhhcCCCCCCEEEccCCCCCcCch-h------
Confidence 999988765555544333 2555555555552 233 233445555555555555555443111 1
Q ss_pred cchhhhhhhhHHHhhhhhhhhcccCCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEc
Q 009672 206 SSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285 (529)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 285 (529)
+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+....+..+..+++|++|++
T Consensus 225 --------------------l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L 284 (328)
T 4fcg_A 225 --------------------IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDL 284 (328)
T ss_dssp --------------------GGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEEC
T ss_pred --------------------hccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeC
Confidence 122245555555554444433344444444444444444444434444444444444444
Q ss_pred cCCCCChHHHHhhcCCCCCCEEECC
Q 009672 286 GFNEITDECLVHLKGLTNLESLNLD 310 (529)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~L~~L~l~ 310 (529)
++|.+.+..|..+..+++++.+.+.
T Consensus 285 ~~n~~~~~iP~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 285 RGCVNLSRLPSLIAQLPANCIILVP 309 (328)
T ss_dssp TTCTTCCCCCGGGGGSCTTCEEECC
T ss_pred CCCCchhhccHHHhhccCceEEeCC
Confidence 4444444444444444444444443
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-21 Score=186.83 Aligned_cols=252 Identities=19% Similarity=0.214 Sum_probs=142.9
Q ss_pred CCccEEEccCCCCCHHHHHHhhcC--CCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChH-HHHhhcCCCCCCE
Q 009672 230 QKLTLLNLEGCPVTAACLDSLSAL--GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE-CLVHLKGLTNLES 306 (529)
Q Consensus 230 ~~L~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~ 306 (529)
..++.++++++.+.. ..+..+ ++++.++++++.+....+. +..+++|++|++++|.+.+. .+..+..+++|++
T Consensus 47 ~~~~~l~l~~~~~~~---~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 47 SLWQTLDLTGKNLHP---DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TTSSEEECTTCBCCH---HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred hhheeeccccccCCH---HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 346777777776653 334444 6777777777766554332 33566777777777766654 4555666777777
Q ss_pred EECCCCCCChhhhhhhcCCCCCCeEEcCCC-ccChh-hhhhccCCCCCCeEeccCC-CCChh-hhhhhcCCC-CCcEEEC
Q 009672 307 LNLDSCGIGDEGLVNLTGLCNLKCLELSDT-QVGSS-GLRHLSGLTNLESINLSFT-GISDG-SLRKLAGLS-SLKSLNL 381 (529)
Q Consensus 307 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~l~~~~-~L~~L~l 381 (529)
|++++|.+....+..++.+++|++|++++| .+++. .+..+..+++|+.|++++| .+++. .+..+..++ +|++|++
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l 202 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL 202 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence 777777666555566666677777777666 45543 2333555666666666666 56543 233344555 6666666
Q ss_pred CCC--CCCH-HHHHHHhcCCCCCEEecCCCC-CChHHHHhhhcCCCCcEEEccCC-CCChhhhhhccCCCCCCeEecCCC
Q 009672 382 DAR--QITD-TGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICGG-GLTDAGVKHIKDLSSLTLLNLSQN 456 (529)
Q Consensus 382 ~~~--~~~~-~~~~~l~~~~~L~~L~l~~~~-l~~~~~~~~~~~~~L~~L~l~~~-~l~~~~~~~~~~~~~L~~L~l~~~ 456 (529)
++| .+++ ..+..+..+++|+.|++++|. +++..+..+..+++|++|++++| .+...+...+..+++|++|++++|
T Consensus 203 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 203 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 665 3442 223344456666666666665 45444445555666666666665 344443344555566666666665
Q ss_pred CCCChhHHHHHhCCCCCCeeeccCCccChhHHH
Q 009672 457 CNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 489 (529)
Q Consensus 457 ~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 489 (529)
+++.....+. ..++.|++++|.+++..+.
T Consensus 283 --i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 283 --VPDGTLQLLK--EALPHLQINCSHFTTIARP 311 (336)
T ss_dssp --SCTTCHHHHH--HHSTTSEESCCCSCCTTCS
T ss_pred --cCHHHHHHHH--hhCcceEEecccCccccCC
Confidence 4433333332 1233444555555554443
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.4e-24 Score=202.24 Aligned_cols=204 Identities=20% Similarity=0.213 Sum_probs=143.5
Q ss_pred CCCCCCEEECCCCCCChhhhhhh--cCCCCCCeEEcCCCccChhhhhhccCC-----CCCCeEeccCCCCChhhhhhhcC
Q 009672 300 GLTNLESLNLDSCGIGDEGLVNL--TGLCNLKCLELSDTQVGSSGLRHLSGL-----TNLESINLSFTGISDGSLRKLAG 372 (529)
Q Consensus 300 ~~~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~~l~~ 372 (529)
.+++|++|++++|.+....+..+ ..+++|+.|++++|.++.. +..++.+ ++|++|++++|.+....+..++.
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 45666666666666554444433 5666777777777766554 3333333 77888888888777766677777
Q ss_pred CCCCcEEECCCCCCCHH--HHHHH--hcCCCCCEEecCCCCCCh---HHHHhhhcCCCCcEEEccCCCCChhhh-hhccC
Q 009672 373 LSSLKSLNLDARQITDT--GLAAL--TSLTGLTHLDLFGARITD---SGAAYLRNFKNLRSLEICGGGLTDAGV-KHIKD 444 (529)
Q Consensus 373 ~~~L~~L~l~~~~~~~~--~~~~l--~~~~~L~~L~l~~~~l~~---~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~ 444 (529)
+++|++|++++|.+.+. .+..+ +.+++|+.|++++|.++. .....+.++++|++|++++|.+++..+ ..+..
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 251 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW 251 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCC
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhh
Confidence 88888888888877653 12333 677888888888888873 333445678888889988888887653 34556
Q ss_pred CCCCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccChhHHHhccCCCCCcEEeecCccCChh
Q 009672 445 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 510 (529)
Q Consensus 445 ~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 510 (529)
+++|++|++++| .++. +|..+. ++|+.|++++|++.+. +. +..+++|++|++++|+++..
T Consensus 252 l~~L~~L~Ls~N-~l~~-ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 252 PSQLNSLNLSFT-GLKQ-VPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp CTTCCEEECTTS-CCSS-CCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred cCCCCEEECCCC-ccCh-hhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence 788999999988 6774 343333 7899999999988876 33 77889999999999988753
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.6e-23 Score=197.57 Aligned_cols=236 Identities=16% Similarity=0.120 Sum_probs=165.4
Q ss_pred CCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEE
Q 009672 253 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 332 (529)
Q Consensus 253 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 332 (529)
.++++.|+++++.+.. .+..+..+++|++|++++|.+. ..|..+..+++|++|++++|.+.. .+..+..+++|+.|+
T Consensus 80 ~~~l~~L~L~~n~l~~-lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRA-LPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCSS-CCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCC-CCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCchh-cChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCcccc-CcHHHhcCcCCCEEE
Confidence 4677777777777663 3444556777777777777766 455556667777777777776653 344566666677776
Q ss_pred cCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCCh
Q 009672 333 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 412 (529)
Q Consensus 333 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~ 412 (529)
+++|......+..+.. ..+ ...+.++++|++|++++|.++.. +..++.+++|+.|++++|.++.
T Consensus 157 L~~n~~~~~~p~~~~~------~~~---------~~~~~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~N~l~~ 220 (328)
T 4fcg_A 157 IRACPELTELPEPLAS------TDA---------SGEHQGLVNLQSLRLEWTGIRSL-PASIANLQNLKSLKIRNSPLSA 220 (328)
T ss_dssp EEEETTCCCCCSCSEE------EC----------CCCEEESTTCCEEEEEEECCCCC-CGGGGGCTTCCEEEEESSCCCC
T ss_pred CCCCCCccccChhHhh------ccc---------hhhhccCCCCCEEECcCCCcCcc-hHhhcCCCCCCEEEccCCCCCc
Confidence 6665443332221111 100 11234567788888888777743 4557778888888888888876
Q ss_pred HHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccChhHHHhcc
Q 009672 413 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 492 (529)
Q Consensus 413 ~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 492 (529)
.++ .+..+++|++|++++|.+.+..+..+..+++|++|++++| .+....|..+..+++|+.|++++|++.+..|..+.
T Consensus 221 l~~-~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n-~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~ 298 (328)
T 4fcg_A 221 LGP-AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDC-SNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA 298 (328)
T ss_dssp CCG-GGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTC-TTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGG
T ss_pred Cch-hhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCC-CchhhcchhhhcCCCCCEEeCCCCCchhhccHHHh
Confidence 543 5778888888888888887777777888888999999888 56666777788889999999999888888888888
Q ss_pred CCCCCcEEeecCccCCh
Q 009672 493 PLKNLRSLTLESCKVTA 509 (529)
Q Consensus 493 ~~~~L~~L~l~~~~~~~ 509 (529)
.+++|+.+++..+.+..
T Consensus 299 ~L~~L~~l~l~~~~~~~ 315 (328)
T 4fcg_A 299 QLPANCIILVPPHLQAQ 315 (328)
T ss_dssp GSCTTCEEECCGGGSCC
T ss_pred hccCceEEeCCHHHHHH
Confidence 88999999888875543
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-21 Score=189.92 Aligned_cols=255 Identities=18% Similarity=0.196 Sum_probs=196.2
Q ss_pred hcccCCccEEEccCCCCCHHHHHH----hhcCCCCCeEecCCCcCC---hhhhHh-------hhcCCCccEEEccCCCCC
Q 009672 226 LTSLQKLTLLNLEGCPVTAACLDS----LSALGSLFYLNLNRCQLS---DDGCEK-------FSKIGSLKVLNLGFNEIT 291 (529)
Q Consensus 226 ~~~~~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~---~~~~~~-------l~~~~~L~~L~l~~~~~~ 291 (529)
+..+++|+.|++++|.+....+.. +..+++|+.|++++|.+. ...+.. +..+++|++|++++|.+.
T Consensus 28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 107 (386)
T ss_dssp HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence 566699999999999988865544 567899999999997443 232333 367899999999999998
Q ss_pred h----HHHHhhcCCCCCCEEECCCCCCChhhhhhhcC----C---------CCCCeEEcCCCccChhhh----hhccCCC
Q 009672 292 D----ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG----L---------CNLKCLELSDTQVGSSGL----RHLSGLT 350 (529)
Q Consensus 292 ~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~----~---------~~L~~L~l~~~~~~~~~~----~~~~~~~ 350 (529)
. ..+..+..+++|++|++++|.++......+.. + ++|++|++++|.++.... ..+..++
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 187 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR 187 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCC
Confidence 7 46667888999999999999887554444433 3 899999999999874433 3566789
Q ss_pred CCCeEeccCCCCChhh-----hhhhcCCCCCcEEECCCCCCCH----HHHHHHhcCCCCCEEecCCCCCChHHH----Hh
Q 009672 351 NLESINLSFTGISDGS-----LRKLAGLSSLKSLNLDARQITD----TGLAALTSLTGLTHLDLFGARITDSGA----AY 417 (529)
Q Consensus 351 ~L~~L~l~~~~~~~~~-----~~~l~~~~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~l~~~~~----~~ 417 (529)
+|+.|++++|.+.+.. +..+..+++|+.|++++|.++. ..+..+..+++|+.|++++|.+++.+. ..
T Consensus 188 ~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 267 (386)
T 2ca6_A 188 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDA 267 (386)
T ss_dssp TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHH
T ss_pred CcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHH
Confidence 9999999999998542 2267789999999999999963 335567789999999999999998743 34
Q ss_pred hh--cCCCCcEEEccCCCCChh----hhhhc-cCCCCCCeEecCCCCCCChhHH--HHHh-CCCCCCeeeccCC
Q 009672 418 LR--NFKNLRSLEICGGGLTDA----GVKHI-KDLSSLTLLNLSQNCNLTDKTL--ELIS-GLTGLVSLNVSNS 481 (529)
Q Consensus 418 ~~--~~~~L~~L~l~~~~l~~~----~~~~~-~~~~~L~~L~l~~~~~l~~~~~--~~l~-~l~~L~~L~l~~~ 481 (529)
+. .+++|++|++++|.++.. .+..+ .++++|++|++++| .++...+ ..+. .+++++.+.+...
T Consensus 268 l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N-~l~~~~~~~~~l~~~l~~~~~~~l~~~ 340 (386)
T 2ca6_A 268 FSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN-RFSEEDDVVDEIREVFSTRGRGELDEL 340 (386)
T ss_dssp HHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTS-BSCTTSHHHHHHHHHHHHHTCCEECCC
T ss_pred HhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCC-cCCcchhHHHHHHHHhhhcCcchhhhc
Confidence 43 389999999999999983 44445 56899999999999 6666552 3332 3566666666554
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.8e-22 Score=192.33 Aligned_cols=252 Identities=19% Similarity=0.224 Sum_probs=165.9
Q ss_pred EEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhh----HhhhcCC-CccEEEccCCCCChHHHHhhcCC-----CC
Q 009672 234 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC----EKFSKIG-SLKVLNLGFNEITDECLVHLKGL-----TN 303 (529)
Q Consensus 234 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~-----~~ 303 (529)
.++++.+.+.+..+..+...++|++|++++|.+....+ ..+..++ +|++|++++|.+.+..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 35677888887777666666679999999988877665 5566677 88888888888876545444442 88
Q ss_pred CCEEECCCCCCChhhhhh----hcCC-CCCCeEEcCCCccChhhhhhc----cC-CCCCCeEeccCCCCChhhhh----h
Q 009672 304 LESLNLDSCGIGDEGLVN----LTGL-CNLKCLELSDTQVGSSGLRHL----SG-LTNLESINLSFTGISDGSLR----K 369 (529)
Q Consensus 304 L~~L~l~~~~~~~~~~~~----~~~~-~~L~~L~l~~~~~~~~~~~~~----~~-~~~L~~L~l~~~~~~~~~~~----~ 369 (529)
|++|++++|.++...+.. +..+ ++|+.|++++|.++......+ .. +++|+.|++++|.+++.... .
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 888888888776554443 3344 788888888888766554433 33 35788888888877753333 3
Q ss_pred hcCCC-CCcEEECCCCCCCHHHHHH----HhcC-CCCCEEecCCCCCChHH----HHhhhc-CCCCcEEEccCCCCChhh
Q 009672 370 LAGLS-SLKSLNLDARQITDTGLAA----LTSL-TGLTHLDLFGARITDSG----AAYLRN-FKNLRSLEICGGGLTDAG 438 (529)
Q Consensus 370 l~~~~-~L~~L~l~~~~~~~~~~~~----l~~~-~~L~~L~l~~~~l~~~~----~~~~~~-~~~L~~L~l~~~~l~~~~ 438 (529)
+...+ +|++|++++|.++...+.. +..+ ++|+.|++++|.+++.+ +..+.. .++|++|++++|.+++.+
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 33444 7888888888776654433 3344 47888888888777632 233333 457888888887777655
Q ss_pred hhh----ccCCCCCCeEecCCCCC---CChhHHH----HHhCCCCCCeeeccCCccChh
Q 009672 439 VKH----IKDLSSLTLLNLSQNCN---LTDKTLE----LISGLTGLVSLNVSNSRITSA 486 (529)
Q Consensus 439 ~~~----~~~~~~L~~L~l~~~~~---l~~~~~~----~l~~l~~L~~L~l~~~~~~~~ 486 (529)
... +..+++|++|++++| . ++..... .+..+++|+.|++++|++...
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n-~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYD-IVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHH-HHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHHhcCCCccEEEeccC-CccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 432 345577777777777 4 3332222 334566677777777777654
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.87 E-value=6.8e-23 Score=203.89 Aligned_cols=236 Identities=18% Similarity=0.177 Sum_probs=163.7
Q ss_pred CCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEE
Q 009672 253 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 332 (529)
Q Consensus 253 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 332 (529)
+++|+.|++++|.+....+..+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.... ..++|+.|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~ 105 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLH 105 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEE
Confidence 3478888888888887777777788888888888888765443 777888888888887655422 337788888
Q ss_pred cCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHh-cCCCCCEEecCCCCCC
Q 009672 333 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFGARIT 411 (529)
Q Consensus 333 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~l~ 411 (529)
+++|.+....+ ..+++|+.|++++|.+....+..++.+++|+.|++++|.++...+..+. .+++|+.|++++|.++
T Consensus 106 L~~N~l~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 106 AANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp CCSSCCCCEEE---CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CcCCcCCCCCc---cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 88877766543 2356777778877777776666677777777777777777765555554 6777777777777777
Q ss_pred hHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccC-hhHHHh
Q 009672 412 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT-SAGLRH 490 (529)
Q Consensus 412 ~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~ 490 (529)
+..+ ...+++|+.|++++|.+++..+. +..+++|+.|++++| .++. +|..+..+++|+.|++++|++. +..+..
T Consensus 183 ~~~~--~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N-~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~ 257 (487)
T 3oja_A 183 DVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNN-KLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDF 257 (487)
T ss_dssp EEEC--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTS-CCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHH
T ss_pred cccc--cccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCC-cCcc-cchhhccCCCCCEEEcCCCCCcCcchHHH
Confidence 6532 23467777777777777765433 666777777777777 5664 3445666777777777777776 444455
Q ss_pred ccCCCCCcEEeec
Q 009672 491 LKPLKNLRSLTLE 503 (529)
Q Consensus 491 ~~~~~~L~~L~l~ 503 (529)
+..++.|+.+++.
T Consensus 258 ~~~l~~L~~l~~~ 270 (487)
T 3oja_A 258 FSKNQRVQTVAKQ 270 (487)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HHhCCCCcEEecc
Confidence 5666666666664
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.87 E-value=9.9e-24 Score=198.07 Aligned_cols=247 Identities=20% Similarity=0.176 Sum_probs=192.6
Q ss_pred cCCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCCh-hhhHhhh-------cCCCccEEEccCCCCChHHHHhh--
Q 009672 229 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD-DGCEKFS-------KIGSLKVLNLGFNEITDECLVHL-- 298 (529)
Q Consensus 229 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~-------~~~~L~~L~l~~~~~~~~~~~~~-- 298 (529)
.++|+.|+++++.+ . .+..+... |+.|+++++.+.. ..+..+. .+++|++|++++|.+.+..+..+
T Consensus 42 ~~~L~~l~l~~n~l-~-~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE-A-DLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EEECTTHHHHCCTT-C-CCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred CCCceeEeeccccc-c-cHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 36788888888887 3 34434332 7777888777643 2222222 58899999999999886666654
Q ss_pred cCCCCCCEEECCCCCCChhhhhhhcCC-----CCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChh--hhhhh-
Q 009672 299 KGLTNLESLNLDSCGIGDEGLVNLTGL-----CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG--SLRKL- 370 (529)
Q Consensus 299 ~~~~~L~~L~l~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~l- 370 (529)
..+++|++|++++|.+... +..+..+ ++|++|++++|.+....+..++.+++|+.|++++|.+... .+..+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence 7899999999999988765 4455544 8999999999999888778889999999999999987653 22333
Q ss_pred -cCCCCCcEEECCCCCCCH---HHHHHHhcCCCCCEEecCCCCCChHHH-HhhhcCCCCcEEEccCCCCChhhhhhccCC
Q 009672 371 -AGLSSLKSLNLDARQITD---TGLAALTSLTGLTHLDLFGARITDSGA-AYLRNFKNLRSLEICGGGLTDAGVKHIKDL 445 (529)
Q Consensus 371 -~~~~~L~~L~l~~~~~~~---~~~~~l~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~ 445 (529)
..+++|++|++++|.+.. .....+..+++|+.|++++|.+++..+ ..+..+++|++|++++|.++.. +..+.
T Consensus 197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~i-p~~~~-- 273 (312)
T 1wwl_A 197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQV-PKGLP-- 273 (312)
T ss_dssp TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSC-CSSCC--
T ss_pred hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChh-hhhcc--
Confidence 788999999999999983 333455688999999999999988653 3456689999999999999844 44444
Q ss_pred CCCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccChh
Q 009672 446 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 486 (529)
Q Consensus 446 ~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~ 486 (529)
++|++|++++| .++.. |. +..+++|+.|++++|++++.
T Consensus 274 ~~L~~L~Ls~N-~l~~~-p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 274 AKLSVLDLSYN-RLDRN-PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp SEEEEEECCSS-CCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred CCceEEECCCC-CCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence 79999999999 78876 44 88899999999999998763
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.87 E-value=6.3e-23 Score=204.10 Aligned_cols=238 Identities=18% Similarity=0.203 Sum_probs=199.1
Q ss_pred cccCCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCE
Q 009672 227 TSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 306 (529)
Q Consensus 227 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 306 (529)
..+++|+.|++++|.+....+..|..+++|+.|++++|.++...+ +..+++|++|++++|.+.+ +...++|+.
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-----l~~~~~L~~ 103 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-----LLVGPSIET 103 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEE-----EEECTTCCE
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCC-----CCCCCCcCE
Confidence 344589999999999988777788999999999999999876554 7788999999999998864 234489999
Q ss_pred EECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhc-CCCCCcEEECCCCC
Q 009672 307 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA-GLSSLKSLNLDARQ 385 (529)
Q Consensus 307 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~ 385 (529)
|++++|.+....+ ..+++|+.|++++|.++...+..++.+++|+.|++++|.+....+..+. .+++|+.|++++|.
T Consensus 104 L~L~~N~l~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~ 180 (487)
T 3oja_A 104 LHAANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (487)
T ss_dssp EECCSSCCCCEEE---CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred EECcCCcCCCCCc---cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc
Confidence 9999998876544 3468899999999999888777788899999999999999887776665 78999999999999
Q ss_pred CCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCC-hhHH
Q 009672 386 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT-DKTL 464 (529)
Q Consensus 386 ~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~-~~~~ 464 (529)
++.. .....+++|+.|++++|.+++.++. +..+++|+.|++++|.++.. +..+..+++|+.|++++| .+. ...+
T Consensus 181 l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~l-p~~l~~l~~L~~L~l~~N-~l~c~~~~ 255 (487)
T 3oja_A 181 IYDV--KGQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLI-EKALRFSQNLEHFDLRGN-GFHCGTLR 255 (487)
T ss_dssp CCEE--ECCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEE-CTTCCCCTTCCEEECTTC-CBCHHHHH
T ss_pred cccc--cccccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCccc-chhhccCCCCCEEEcCCC-CCcCcchH
Confidence 9875 2344688999999999999987654 78899999999999999874 556778899999999999 555 5677
Q ss_pred HHHhCCCCCCeeecc
Q 009672 465 ELISGLTGLVSLNVS 479 (529)
Q Consensus 465 ~~l~~l~~L~~L~l~ 479 (529)
..+..++.|+.++++
T Consensus 256 ~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 256 DFFSKNQRVQTVAKQ 270 (487)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHHhCCCCcEEecc
Confidence 788888888888886
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.86 E-value=6.8e-21 Score=182.70 Aligned_cols=252 Identities=18% Similarity=0.218 Sum_probs=196.0
Q ss_pred eEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHH----HhhcCCC-CCCEEECCCCCCChhhhhhhcCC-----CC
Q 009672 258 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL----VHLKGLT-NLESLNLDSCGIGDEGLVNLTGL-----CN 327 (529)
Q Consensus 258 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~----~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~-----~~ 327 (529)
++.++.+.+++..+..+...++|++|++++|.+.+..+ ..+..++ +|++|++++|.++...+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 46788888888777777777779999999999877655 6677888 99999999998887666665553 89
Q ss_pred CCeEEcCCCccChhhhhh----ccCC-CCCCeEeccCCCCChhhhhhhc----C-CCCCcEEECCCCCCCHHHH----HH
Q 009672 328 LKCLELSDTQVGSSGLRH----LSGL-TNLESINLSFTGISDGSLRKLA----G-LSSLKSLNLDARQITDTGL----AA 393 (529)
Q Consensus 328 L~~L~l~~~~~~~~~~~~----~~~~-~~L~~L~l~~~~~~~~~~~~l~----~-~~~L~~L~l~~~~~~~~~~----~~ 393 (529)
|+.|++++|.++...+.. +..+ ++|+.|++++|.+++.....+. . +++|++|++++|.+.+... ..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 999999999988765543 4445 8999999999998876665443 3 4699999999999985433 44
Q ss_pred HhcCC-CCCEEecCCCCCChHHHHh----hhcC-CCCcEEEccCCCCChhhhh----hccC-CCCCCeEecCCCCCCChh
Q 009672 394 LTSLT-GLTHLDLFGARITDSGAAY----LRNF-KNLRSLEICGGGLTDAGVK----HIKD-LSSLTLLNLSQNCNLTDK 462 (529)
Q Consensus 394 l~~~~-~L~~L~l~~~~l~~~~~~~----~~~~-~~L~~L~l~~~~l~~~~~~----~~~~-~~~L~~L~l~~~~~l~~~ 462 (529)
+...+ +|+.|++++|.+++.++.. +..+ ++|++|++++|.+++.+.. .+.. .++|++|++++| .+++.
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~ 240 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLN-CLHGP 240 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSS-CCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCC-CCCcH
Confidence 45555 9999999999998766543 3455 5999999999999885444 3443 469999999999 78775
Q ss_pred HHH----HHhCCCCCCeeeccCCccChhHH-------HhccCCCCCcEEeecCccCChh
Q 009672 463 TLE----LISGLTGLVSLNVSNSRITSAGL-------RHLKPLKNLRSLTLESCKVTAN 510 (529)
Q Consensus 463 ~~~----~l~~l~~L~~L~l~~~~~~~~~~-------~~~~~~~~L~~L~l~~~~~~~~ 510 (529)
.+. .+..+++|+.|++++|.+..... ..+..+++|+.|++++|++...
T Consensus 241 ~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp CHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 543 34567999999999998433222 3456788999999999998865
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.85 E-value=9e-21 Score=192.29 Aligned_cols=224 Identities=21% Similarity=0.136 Sum_probs=117.9
Q ss_pred CCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEEC
Q 009672 230 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 309 (529)
Q Consensus 230 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 309 (529)
++|++|++++|.+..... .+++|++|++++|.+..... .+++|+.|++++|.+.. .+. .+++|++|++
T Consensus 81 ~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~l~~l~~----~l~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L 148 (622)
T 3g06_A 81 PELRTLEVSGNQLTSLPV----LPPGLLELSIFSNPLTHLPA----LPSGLCKLWIFGNQLTS-LPV---LPPGLQELSV 148 (622)
T ss_dssp TTCCEEEECSCCCSCCCC----CCTTCCEEEECSCCCCCCCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEEC
T ss_pred CCCCEEEcCCCcCCcCCC----CCCCCCEEECcCCcCCCCCC----CCCCcCEEECCCCCCCc-CCC---CCCCCCEEEC
Confidence 566666666666553211 45566666666665554322 34556666666665543 111 2356666666
Q ss_pred CCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHH
Q 009672 310 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 389 (529)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 389 (529)
++|.+.... ..+++|+.|++++|.++... ..+++|+.|++++|.+..... ..++|+.|++++|.+...
T Consensus 149 s~N~l~~l~----~~~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~~l 216 (622)
T 3g06_A 149 SDNQLASLP----ALPSELCKLWAYNNQLTSLP----MLPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLTSL 216 (622)
T ss_dssp CSSCCSCCC----CCCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSC
T ss_pred cCCcCCCcC----CccCCCCEEECCCCCCCCCc----ccCCCCcEEECCCCCCCCCCC----ccchhhEEECcCCccccc
Confidence 666554321 12345666666666555432 334556666666665554221 234566666666655543
Q ss_pred HHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhC
Q 009672 390 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 469 (529)
Q Consensus 390 ~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~ 469 (529)
+ ..+++|+.|++++|.++..+ ..+++|+.|++++|.++.... .+++|++|++++| .++. +|..+..
T Consensus 217 ~----~~~~~L~~L~Ls~N~L~~lp----~~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N-~L~~-lp~~l~~ 282 (622)
T 3g06_A 217 P----ALPSGLKELIVSGNRLTSLP----VLPSELKELMVSGNRLTSLPM----LPSGLLSLSVYRN-QLTR-LPESLIH 282 (622)
T ss_dssp C----CCCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSS-CCCS-CCGGGGG
T ss_pred C----CCCCCCCEEEccCCccCcCC----CCCCcCcEEECCCCCCCcCCc----ccccCcEEeCCCC-CCCc-CCHHHhh
Confidence 1 12355666666666555532 344566666666665554322 3455666666666 4553 3444555
Q ss_pred CCCCCeeeccCCccChhHHHhc
Q 009672 470 LTGLVSLNVSNSRITSAGLRHL 491 (529)
Q Consensus 470 l~~L~~L~l~~~~~~~~~~~~~ 491 (529)
+++|+.|++++|++.+..+..+
T Consensus 283 l~~L~~L~L~~N~l~~~~~~~l 304 (622)
T 3g06_A 283 LSSETTVNLEGNPLSERTLQAL 304 (622)
T ss_dssp SCTTCEEECCSCCCCHHHHHHH
T ss_pred ccccCEEEecCCCCCCcCHHHH
Confidence 6666666666666665555433
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.8e-20 Score=190.06 Aligned_cols=269 Identities=20% Similarity=0.102 Sum_probs=212.6
Q ss_pred CCCCCEEeccCccccccccccccCCCcCcEEeccCCcccCccccccccCCCCCCeEEccCCCCChhHHHHhhccCccchh
Q 009672 130 LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVI 209 (529)
Q Consensus 130 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~ 209 (529)
..++++|+++++. +...+..+. ++|+.|++++| .+.... . .+++|++|++++|.++.... .
T Consensus 39 ~~~l~~L~ls~n~-L~~lp~~l~--~~L~~L~L~~N-~l~~lp-~---~l~~L~~L~Ls~N~l~~lp~----~------- 99 (622)
T 3g06_A 39 NNGNAVLNVGESG-LTTLPDCLP--AHITTLVIPDN-NLTSLP-A---LPPELRTLEVSGNQLTSLPV----L------- 99 (622)
T ss_dssp HHCCCEEECCSSC-CSCCCSCCC--TTCSEEEECSC-CCSCCC-C---CCTTCCEEEECSCCCSCCCC----C-------
T ss_pred CCCCcEEEecCCC-cCccChhhC--CCCcEEEecCC-CCCCCC-C---cCCCCCEEEcCCCcCCcCCC----C-------
Confidence 3469999999975 444444443 89999999995 455322 2 57899999999999875322 2
Q ss_pred hhhhhhHHHhhhhhhhhcccCCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCC
Q 009672 210 FILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 289 (529)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 289 (529)
+++|++|++++|.+..... .+++|+.|++++|.++.... .+++|++|++++|.
T Consensus 100 -------------------l~~L~~L~Ls~N~l~~l~~----~l~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~ 152 (622)
T 3g06_A 100 -------------------PPGLLELSIFSNPLTHLPA----LPSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQ 152 (622)
T ss_dssp -------------------CTTCCEEEECSCCCCCCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSC
T ss_pred -------------------CCCCCEEECcCCcCCCCCC----CCCCcCEEECCCCCCCcCCC----CCCCCCEEECcCCc
Confidence 2899999999998876432 57899999999999876432 35899999999998
Q ss_pred CChHHHHhhcCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhh
Q 009672 290 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 369 (529)
Q Consensus 290 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 369 (529)
+... + ...++|+.|++.+|.+.... ..+++|+.|++++|.++... ...++|+.|++++|.+.....
T Consensus 153 l~~l-~---~~~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~l~~l~----~~~~~L~~L~L~~N~l~~l~~-- 218 (622)
T 3g06_A 153 LASL-P---ALPSELCKLWAYNNQLTSLP----MLPSGLQELSVSDNQLASLP----TLPSELYKLWAYNNRLTSLPA-- 218 (622)
T ss_dssp CSCC-C---CCCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSSCCC--
T ss_pred CCCc-C---CccCCCCEEECCCCCCCCCc----ccCCCCcEEECCCCCCCCCC----CccchhhEEECcCCcccccCC--
Confidence 8742 2 24679999999999887643 45789999999999987532 235799999999998886432
Q ss_pred hcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCC
Q 009672 370 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 449 (529)
Q Consensus 370 l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~ 449 (529)
.+++|+.|++++|.++..+ ..+++|+.|++++|.++..+. .+++|+.|++++|.++.. +..+.++++|+
T Consensus 219 --~~~~L~~L~Ls~N~L~~lp----~~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~~l-p~~l~~l~~L~ 287 (622)
T 3g06_A 219 --LPSGLKELIVSGNRLTSLP----VLPSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTRL-PESLIHLSSET 287 (622)
T ss_dssp --CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCCSC-CGGGGGSCTTC
T ss_pred --CCCCCCEEEccCCccCcCC----CCCCcCcEEECCCCCCCcCCc----ccccCcEEeCCCCCCCcC-CHHHhhccccC
Confidence 3478999999999998753 567899999999999987644 678999999999999955 66788999999
Q ss_pred eEecCCCCCCChhHHHHHhCC
Q 009672 450 LLNLSQNCNLTDKTLELISGL 470 (529)
Q Consensus 450 ~L~l~~~~~l~~~~~~~l~~l 470 (529)
.|++++| .++...+..+..+
T Consensus 288 ~L~L~~N-~l~~~~~~~l~~L 307 (622)
T 3g06_A 288 TVNLEGN-PLSERTLQALREI 307 (622)
T ss_dssp EEECCSC-CCCHHHHHHHHHH
T ss_pred EEEecCC-CCCCcCHHHHHhc
Confidence 9999999 7888888877643
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.6e-21 Score=177.57 Aligned_cols=201 Identities=19% Similarity=0.214 Sum_probs=129.3
Q ss_pred CccEEEccCCCCChHHHHhhcCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEecc
Q 009672 279 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 358 (529)
Q Consensus 279 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 358 (529)
..++++++++.++. .|..+ .++++.|+++++.+.......+..+++|++|++++|.++......+..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~~-ip~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA-IPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCc-cCCCC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 46677777776663 23222 2567777777777766555566777777777777777665555555667777777777
Q ss_pred CCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhh
Q 009672 359 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 438 (529)
Q Consensus 359 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~ 438 (529)
+|.+.......+..+++|++|++++|.+....+..++.+++|+.|++++|.++..++..+..+++|++|++++|.++...
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 173 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP 173 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence 77766655555666667777777776666654455566666666666666666655555566666666666666666655
Q ss_pred hhhccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCcc
Q 009672 439 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 483 (529)
Q Consensus 439 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 483 (529)
+..+..+++|++|++++| .++...+..+..+++|+.|++++|++
T Consensus 174 ~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 174 EGAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp TTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred hhHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCCCe
Confidence 555666666666666666 55554444555566666666666654
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-21 Score=180.83 Aligned_cols=205 Identities=24% Similarity=0.249 Sum_probs=130.4
Q ss_pred CCccEEEccCCCCChHHHHhhcCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEec
Q 009672 278 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 357 (529)
Q Consensus 278 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 357 (529)
++|++|++++|.+.+..+..+..+++|++|++++|.+.......+..+++|++|++++|.+....+..+..+++|+.|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 36777777777776555556667777777777777776655556677777777777777776665566667777777777
Q ss_pred cCCCCChhhhhhhcCCCCCcEEECCCCCCCHHH-HHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCc----EEEccCC
Q 009672 358 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTG-LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR----SLEICGG 432 (529)
Q Consensus 358 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~----~L~l~~~ 432 (529)
++|.+.......+..+++|++|++++|.+.... +..++.+++|+.|++++|+++...+..+..+++|+ +|++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 777766655555666677777777777665532 44556666677777766666655444444444444 5666666
Q ss_pred CCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccC
Q 009672 433 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484 (529)
Q Consensus 433 ~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 484 (529)
.++...+..+. ..+|++|++++| .++...+..+..+++|+.|++++|++.
T Consensus 188 ~l~~~~~~~~~-~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 188 PMNFIQPGAFK-EIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp CCCEECTTSSC-SCCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred cccccCccccC-CCcccEEECCCC-ceeecCHhHhcccccccEEEccCCccc
Confidence 66655443333 235666666666 555544444555666666666666554
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.84 E-value=6.7e-21 Score=174.84 Aligned_cols=201 Identities=18% Similarity=0.219 Sum_probs=148.9
Q ss_pred CCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEEc
Q 009672 254 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 333 (529)
Q Consensus 254 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 333 (529)
...+.++++++.++..+ ..+ .++++.|++++|.+....+..+..+++|++|++++|.+.......+..+++|++|++
T Consensus 16 ~~~~~l~~~~~~l~~ip-~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIP-SNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTTEEECTTSCCSSCC-SCC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCCEEEccCCCCCccC-CCC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 35677788777776532 222 246788888888777655556777888888888888777665556677788888888
Q ss_pred CCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChH
Q 009672 334 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 413 (529)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~ 413 (529)
++|.+.......+..+++|+.|++++|.+....+..+..+++|++|++++|.+.......++.+++|+.|++++|.++..
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 172 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV 172 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe
Confidence 88877766666667778888888888877776666677778888888888877776555567778888888888887777
Q ss_pred HHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCC
Q 009672 414 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 457 (529)
Q Consensus 414 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~ 457 (529)
.+..+.++++|++|++++|.++......+..+++|+.|++++|+
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence 66667778888888888888777666667777888888888874
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=3.8e-21 Score=177.30 Aligned_cols=202 Identities=23% Similarity=0.198 Sum_probs=131.0
Q ss_pred CCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEEc
Q 009672 254 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 333 (529)
Q Consensus 254 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 333 (529)
++|+.|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 45777777777776655556666777777777777666544445666777777777777666655566666777777777
Q ss_pred CCCccChhhhhhccCCCCCCeEeccCCCCChhh-hhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCC----EEecCCC
Q 009672 334 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGS-LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT----HLDLFGA 408 (529)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~----~L~l~~~ 408 (529)
++|.+.......++.+++|+.|++++|.+.... +..+..+++|++|++++|.++...+..+..+++|+ .+++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 777666555545666777777777777666532 45566677777777777776654333333333333 6777777
Q ss_pred CCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCC
Q 009672 409 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 456 (529)
Q Consensus 409 ~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~ 456 (529)
.++...+..+. ..+|++|++++|.++......+..+++|++|++++|
T Consensus 188 ~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 188 PMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp CCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSS
T ss_pred cccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCC
Confidence 77665444332 336777777777776665555666777777777776
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1.8e-20 Score=172.12 Aligned_cols=187 Identities=22% Similarity=0.206 Sum_probs=109.1
Q ss_pred cCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcE
Q 009672 299 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 378 (529)
Q Consensus 299 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 378 (529)
..+++|+.|++++|.+... ..+..+++|++|++++|.++...+..+..+++|++|++++|.+....+..+..+++|++
T Consensus 60 ~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 137 (272)
T 3rfs_A 60 QYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTY 137 (272)
T ss_dssp GGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCE
Confidence 3344444444444443321 23344455555555555444444444455555555555555555444444555566666
Q ss_pred EECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCC
Q 009672 379 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 458 (529)
Q Consensus 379 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~ 458 (529)
|++++|.+....+..++.+++|+.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++| .
T Consensus 138 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N-~ 216 (272)
T 3rfs_A 138 LNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN-P 216 (272)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS-C
T ss_pred EECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCC-C
Confidence 666666665544444556666777777777666665555666777777777777777665656667777777777777 3
Q ss_pred CChhHHHHHhCCCCCCeeeccCCccChhHHHhccCCC
Q 009672 459 LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK 495 (529)
Q Consensus 459 l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 495 (529)
+. +.++.|+.|+++.|.+.+..+..++.++
T Consensus 217 ~~-------~~~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 217 WD-------CTCPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp BC-------CCTTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred cc-------ccCcHHHHHHHHHHhCCCcccCcccccC
Confidence 33 2356777777777777766555544443
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.81 E-value=2.2e-19 Score=167.79 Aligned_cols=193 Identities=28% Similarity=0.386 Sum_probs=144.2
Q ss_pred cCCCccEEEccCCCCChHHHHhhcCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeE
Q 009672 276 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 355 (529)
Q Consensus 276 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 355 (529)
.+++|++|+++++.+... + .+..+++|+.|++++|.+..... +..+++|+.|++++|.+... ..+..+++|+.|
T Consensus 39 ~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L 112 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTL 112 (308)
T ss_dssp HHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEE
T ss_pred HcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEE
Confidence 456888888888877642 2 46778888888888887776444 77788888888888887654 346777888888
Q ss_pred eccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCC
Q 009672 356 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 435 (529)
Q Consensus 356 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~ 435 (529)
++++|.+.... .+..+++|+.|++++|.+....+ ++.+++|+.|++++|.+++..+ +..+++|++|++++|.++
T Consensus 113 ~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~ 186 (308)
T 1h6u_A 113 DLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS 186 (308)
T ss_dssp ECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred ECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccC
Confidence 88888877643 36777888888888888776533 6777888888888887777544 677788888888888877
Q ss_pred hhhhhhccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccCh
Q 009672 436 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 485 (529)
Q Consensus 436 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~ 485 (529)
+..+ +..+++|++|++++| .++...+ +..+++|+.|++++|++..
T Consensus 187 ~~~~--l~~l~~L~~L~L~~N-~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 187 DISP--LASLPNLIEVHLKNN-QISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCGG--GGGCTTCCEEECTTS-CCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred cChh--hcCCCCCCEEEccCC-ccCcccc--ccCCCCCCEEEccCCeeec
Confidence 6543 667778888888888 6666543 6777888888888887765
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.7e-20 Score=174.51 Aligned_cols=203 Identities=17% Similarity=0.121 Sum_probs=140.0
Q ss_pred CCCCEEECCCCCCChhhhhhh--cCCCCCCeEEcCCCccChhh----hhhccCCCCCCeEeccCCCCChhhhhhhcCCCC
Q 009672 302 TNLESLNLDSCGIGDEGLVNL--TGLCNLKCLELSDTQVGSSG----LRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 375 (529)
Q Consensus 302 ~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 375 (529)
++|++|++++|.+....+..+ ..+++|+.|++++|.++... ...+..+++|+.|++++|.+....+..++.+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 456666666665554444444 55667777777776665421 123346777888888888777766667777788
Q ss_pred CcEEECCCCCCCHHHH----HHHhcCCCCCEEecCCCCCChHHHH---hhhcCCCCcEEEccCCCCChhhhhhccCC---
Q 009672 376 LKSLNLDARQITDTGL----AALTSLTGLTHLDLFGARITDSGAA---YLRNFKNLRSLEICGGGLTDAGVKHIKDL--- 445 (529)
Q Consensus 376 L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~l~~~~l~~~~~~---~~~~~~~L~~L~l~~~~l~~~~~~~~~~~--- 445 (529)
|++|++++|.+..... ..++.+++|++|++++|+++..+.. .+..+++|++|++++|.+++..+..+..+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~ 250 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS 250 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence 8888888887765311 1124677888888888888754322 34678888888888888887766555555
Q ss_pred CCCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccChhHHHhccCCCCCcEEeecCccCChh
Q 009672 446 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 510 (529)
Q Consensus 446 ~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 510 (529)
++|++|++++| .++. +|..+ .++|+.|++++|++++.. .+..+++|+.|++++|+++..
T Consensus 251 ~~L~~L~Ls~N-~l~~-lp~~~--~~~L~~L~Ls~N~l~~~~--~~~~l~~L~~L~L~~N~l~~~ 309 (310)
T 4glp_A 251 SALNSLNLSFA-GLEQ-VPKGL--PAKLRVLDLSSNRLNRAP--QPDELPEVDNLTLDGNPFLVP 309 (310)
T ss_dssp TTCCCEECCSS-CCCS-CCSCC--CSCCSCEECCSCCCCSCC--CTTSCCCCSCEECSSTTTSCC
T ss_pred CcCCEEECCCC-CCCc-hhhhh--cCCCCEEECCCCcCCCCc--hhhhCCCccEEECcCCCCCCC
Confidence 68889999888 6774 34333 378999999999888642 256788899999999988753
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.81 E-value=3.2e-20 Score=170.48 Aligned_cols=200 Identities=21% Similarity=0.203 Sum_probs=166.0
Q ss_pred hcCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCc
Q 009672 298 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 377 (529)
Q Consensus 298 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 377 (529)
...+++|+.|.+.++.+... ..+..+++|+.|++++|.+... ..+..+++|++|++++|.+....+..+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 33467888888888876542 3467789999999999988764 4678889999999999999887777788899999
Q ss_pred EEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCC
Q 009672 378 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 457 (529)
Q Consensus 378 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~ 457 (529)
+|++++|.+....+..++.+++|+.|++++|.++...+..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N- 191 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN- 191 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCC-
Confidence 9999999998776666788899999999999998887777888999999999999998877777788899999999999
Q ss_pred CCChhHHHHHhCCCCCCeeeccCCccChhHHHhccCCCCCcEEeecCccCCh
Q 009672 458 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 509 (529)
Q Consensus 458 ~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 509 (529)
.++...+..+..+++|+.|++++|++.. .+++|+.++++.|.++.
T Consensus 192 ~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g 236 (272)
T 3rfs_A 192 QLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSG 236 (272)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGG
T ss_pred cCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCC
Confidence 7888777778889999999999998763 46778888888876654
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.81 E-value=5.4e-20 Score=170.11 Aligned_cols=203 Identities=21% Similarity=0.166 Sum_probs=132.8
Q ss_pred hhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCC
Q 009672 274 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353 (529)
Q Consensus 274 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 353 (529)
+..++++++++++++.++. .|..+ .++++.|++++|.+....+..+..+++|+.|++++|.++.... .+.+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~-ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTA-LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCSS-CCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCC
T ss_pred ccccCCccEEECCCCCCCc-CCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCC
Confidence 3456778888887777763 23222 3677888888887776666677777888888888777765432 25667777
Q ss_pred eEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCC
Q 009672 354 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 433 (529)
Q Consensus 354 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~ 433 (529)
.|++++|.+... +..+..+++|+.|++++|.++...+..+..+++|+.|++++|+++...+..+..+++|+.|++++|+
T Consensus 81 ~L~Ls~N~l~~l-~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 81 TLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EEECCSSCCSSC-CCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcCCcC-chhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 777777776643 3345566677777777777766544556666677777777777666655556666777777777776
Q ss_pred CChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccC
Q 009672 434 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484 (529)
Q Consensus 434 l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 484 (529)
++......+..+++|++|++++| .++. +|..+..+++|+.|++++|++.
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N-~l~~-ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQEN-SLYT-IPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSS-CCCC-CCTTTTTTCCCSEEECCSCCBC
T ss_pred CCccCHHHhcCcCCCCEEECCCC-cCCc-cChhhcccccCCeEEeCCCCcc
Confidence 66655555566667777777776 5553 3344445566666666666654
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.79 E-value=7.5e-19 Score=164.17 Aligned_cols=194 Identities=28% Similarity=0.397 Sum_probs=157.6
Q ss_pred hcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEECCCCCCChhhhhhhcCCCCCCe
Q 009672 251 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 330 (529)
Q Consensus 251 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 330 (529)
..+++|+.|+++++.+... ..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+... ..+..+++|+.
T Consensus 38 ~~l~~L~~L~l~~~~i~~l--~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~ 111 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKT 111 (308)
T ss_dssp HHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCE
T ss_pred HHcCCcCEEEeeCCCccCc--hhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCE
Confidence 3567899999999888764 257788899999999998876444 78889999999999987764 35778899999
Q ss_pred EEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCC
Q 009672 331 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 410 (529)
Q Consensus 331 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l 410 (529)
|++++|.+.... .+..+++|+.|++++|.+..... +..+++|+.|++++|.+....+ +..+++|+.|++++|.+
T Consensus 112 L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l 185 (308)
T 1h6u_A 112 LDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKI 185 (308)
T ss_dssp EECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCcc
Confidence 999999887653 37888999999999998877544 7788899999999998887543 78889999999999988
Q ss_pred ChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCCh
Q 009672 411 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 461 (529)
Q Consensus 411 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~ 461 (529)
++..+ +..+++|++|++++|.+++.. .+..+++|++|++++| .++.
T Consensus 186 ~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N-~i~~ 231 (308)
T 1h6u_A 186 SDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQ-TITN 231 (308)
T ss_dssp CCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEE-EEEC
T ss_pred CcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCC-eeec
Confidence 87654 778899999999999988765 3778899999999998 4544
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.79 E-value=2.7e-20 Score=167.59 Aligned_cols=197 Identities=17% Similarity=0.177 Sum_probs=124.3
Q ss_pred CCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCc-cChhhhhhccCCCCCCeEeccC-CCCChhhhhhhcCCCCCcEEE
Q 009672 303 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLN 380 (529)
Q Consensus 303 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~ 380 (529)
+++.|+++++.+.......+..+++|+.|++++|. ++......+..+++|+.|++++ |.+.......+.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 45555555555554444445555555555555554 5444444455556666666665 555555555555666666666
Q ss_pred CCCCCCCHHHHHHHhcCCCCC---EEecCCC-CCChHHHHhhhcCCCCc-EEEccCCCCChhhhhhccCCCCCCeEecCC
Q 009672 381 LDARQITDTGLAALTSLTGLT---HLDLFGA-RITDSGAAYLRNFKNLR-SLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 455 (529)
Q Consensus 381 l~~~~~~~~~~~~l~~~~~L~---~L~l~~~-~l~~~~~~~~~~~~~L~-~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~ 455 (529)
+++|.+...+ . +..+++|+ .|++++| .++...+..+.++++|+ +|++++|+++......+.. ++|++|++++
T Consensus 112 l~~n~l~~lp-~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~ 188 (239)
T 2xwt_C 112 IFNTGLKMFP-D-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNK 188 (239)
T ss_dssp EEEECCCSCC-C-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTT
T ss_pred CCCCCCcccc-c-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCC
Confidence 6666665532 1 55566666 7777777 77766666677777777 7888777777554444544 6788888887
Q ss_pred CCCCChhHHHHHhCC-CCCCeeeccCCccChhHHHhccCCCCCcEEeecCc
Q 009672 456 NCNLTDKTLELISGL-TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 505 (529)
Q Consensus 456 ~~~l~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 505 (529)
|+.++...+..+..+ ++|+.|++++|++...... .+++|+.|+++++
T Consensus 189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp CTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred CCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 744666656667777 7888888888877754332 5677778887776
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=9.8e-20 Score=170.70 Aligned_cols=230 Identities=16% Similarity=0.087 Sum_probs=139.2
Q ss_pred CCccEEEccCCCCCHHHHHH---hhcCCCCCeEecCCCcCChhhhHhh--hcCCCccEEEccCCCCChHHHHhhcCCCCC
Q 009672 230 QKLTLLNLEGCPVTAACLDS---LSALGSLFYLNLNRCQLSDDGCEKF--SKIGSLKVLNLGFNEITDECLVHLKGLTNL 304 (529)
Q Consensus 230 ~~L~~L~l~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 304 (529)
..++.+.+.++.+....... +..+++|++|++++|.+....+..+ ..+++|++|++++|.+.+..+
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~--------- 134 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRS--------- 134 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTS---------
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhh---------
Confidence 45677777777665432221 1223556666666666655444444 455566666666655543111
Q ss_pred CEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhh----hhhhcCCCCCcEEE
Q 009672 305 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS----LRKLAGLSSLKSLN 380 (529)
Q Consensus 305 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~ 380 (529)
......+..+++|++|++++|.+....+..++.+++|+.|++++|.+.... ...+..+++|++|+
T Consensus 135 -----------~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~ 203 (310)
T 4glp_A 135 -----------WLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLA 203 (310)
T ss_dssp -----------SHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCB
T ss_pred -----------hhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEE
Confidence 001122234455555555555554444444555556666666666544311 11224567777777
Q ss_pred CCCCCCCHHHHH---HHhcCCCCCEEecCCCCCChHHHHhhhcC---CCCcEEEccCCCCChhhhhhccCCCCCCeEecC
Q 009672 381 LDARQITDTGLA---ALTSLTGLTHLDLFGARITDSGAAYLRNF---KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 454 (529)
Q Consensus 381 l~~~~~~~~~~~---~l~~~~~L~~L~l~~~~l~~~~~~~~~~~---~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~ 454 (529)
+++|.++..... .++.+++|+.|++++|.+++..+..+..+ ++|++|++++|.++.. +..+. ++|++|+++
T Consensus 204 Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~l-p~~~~--~~L~~L~Ls 280 (310)
T 4glp_A 204 LRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQV-PKGLP--AKLRVLDLS 280 (310)
T ss_dssp CCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSC-CSCCC--SCCSCEECC
T ss_pred CCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCch-hhhhc--CCCCEEECC
Confidence 777777643221 34677888888888888887655455454 6899999999988854 44443 789999999
Q ss_pred CCCCCChhHHHHHhCCCCCCeeeccCCccCh
Q 009672 455 QNCNLTDKTLELISGLTGLVSLNVSNSRITS 485 (529)
Q Consensus 455 ~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~ 485 (529)
+| .++.. +. +..+++|+.|++++|++++
T Consensus 281 ~N-~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 281 SN-RLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp SC-CCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred CC-cCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 99 77764 22 5678999999999998875
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.8e-19 Score=166.61 Aligned_cols=201 Identities=24% Similarity=0.229 Sum_probs=171.8
Q ss_pred hhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEECCCCCCChhhhhhhcCCCCCC
Q 009672 250 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 329 (529)
Q Consensus 250 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 329 (529)
+.++++++.++++++.++..+. .+ .+.++.|++++|.+....+..+..+++|+.|++++|.+..... ...+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~-~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPP-DL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCS-CC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCC
T ss_pred ccccCCccEEECCCCCCCcCCC-CC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCC
Confidence 4567899999999998876442 22 3689999999999987777789999999999999998876443 26789999
Q ss_pred eEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCC
Q 009672 330 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 409 (529)
Q Consensus 330 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 409 (529)
.|++++|.+... +..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|+
T Consensus 81 ~L~Ls~N~l~~l-~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 81 TLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EEECCSSCCSSC-CCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcCCcC-chhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 999999998744 4456788999999999999998777889999999999999999998766777889999999999999
Q ss_pred CChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCC
Q 009672 410 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 457 (529)
Q Consensus 410 l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~ 457 (529)
++..++..+..+++|+.|++++|.++.. +..+...++|+.|++++|+
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N~l~~i-p~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQENSLYTI-PKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCCCSEEECCSCC
T ss_pred CCccCHHHhcCcCCCCEEECCCCcCCcc-ChhhcccccCCeEEeCCCC
Confidence 9988877888999999999999999865 4556667899999999995
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.77 E-value=3.5e-19 Score=161.50 Aligned_cols=180 Identities=19% Similarity=0.264 Sum_probs=114.2
Q ss_pred CCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEEC
Q 009672 302 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 381 (529)
Q Consensus 302 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 381 (529)
...+.++..++.+.... ..+ .+.++.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|++|++
T Consensus 14 ~~~~~l~~~~~~l~~~p-~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVP-SGI--PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCSSCC-SCC--CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCccccC-CCC--CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 35566777766655422 222 246777777777776665556666777777777777766655555666667777777
Q ss_pred CCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCCh
Q 009672 382 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 461 (529)
Q Consensus 382 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~ 461 (529)
++|.+....+..+..+++|+.|++++|.++...+..+..+++|++|++++|.++...+..+..+++|++|++++| .++.
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~ 169 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN-QLQS 169 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCC-cCCc
Confidence 777666654455566666666666666666655555566666666666666666655555666666666666666 5555
Q ss_pred hHHHHHhCCCCCCeeeccCCccCh
Q 009672 462 KTLELISGLTGLVSLNVSNSRITS 485 (529)
Q Consensus 462 ~~~~~l~~l~~L~~L~l~~~~~~~ 485 (529)
..+..+..+++|+.|++++|++..
T Consensus 170 ~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 170 VPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSCCBCT
T ss_pred cCHHHHhCCCCCCEEEeeCCceeC
Confidence 555555666666666666666544
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.8e-19 Score=160.94 Aligned_cols=178 Identities=15% Similarity=0.126 Sum_probs=74.0
Q ss_pred CCCeEecCCCcCChhhhHhhhcCCCccEEEccCCC-CChHHHHhhcCCCCCCEEECCC-CCCChhhhhhhcCCCCCCeEE
Q 009672 255 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVHLKGLTNLESLNLDS-CGIGDEGLVNLTGLCNLKCLE 332 (529)
Q Consensus 255 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~ 332 (529)
+|+.|++++|.++...+..+..+++|++|++++|. +....+..+..+++|++|++++ +.+....+..+..+++|+.|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 33444444444333333333334444444444443 3322222344444444444444 444433333344444444444
Q ss_pred cCCCccChhhhhhccCCCCCC---eEeccCC-CCChhhhhhhcCCCCCc-EEECCCCCCCHHHHHHHhcCCCCCEEecCC
Q 009672 333 LSDTQVGSSGLRHLSGLTNLE---SINLSFT-GISDGSLRKLAGLSSLK-SLNLDARQITDTGLAALTSLTGLTHLDLFG 407 (529)
Q Consensus 333 l~~~~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 407 (529)
+++|.+.... . +..+++|+ .+++++| .+.......+..+++|+ .|++++|.+...+...+.. ++|+.|++++
T Consensus 112 l~~n~l~~lp-~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~ 188 (239)
T 2xwt_C 112 IFNTGLKMFP-D-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNK 188 (239)
T ss_dssp EEEECCCSCC-C-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTT
T ss_pred CCCCCCcccc-c-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCC
Confidence 4444443321 1 33334444 5555554 44444333444444455 5555444444322222222 3444444444
Q ss_pred CC-CChHHHHhhhcC-CCCcEEEccCCCCC
Q 009672 408 AR-ITDSGAAYLRNF-KNLRSLEICGGGLT 435 (529)
Q Consensus 408 ~~-l~~~~~~~~~~~-~~L~~L~l~~~~l~ 435 (529)
|+ ++..++..+..+ ++|++|++++|.++
T Consensus 189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218 (239)
T ss_dssp CTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred CCCcccCCHHHhhccccCCcEEECCCCccc
Confidence 42 444333344444 44444444444444
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.9e-18 Score=156.58 Aligned_cols=180 Identities=20% Similarity=0.247 Sum_probs=147.8
Q ss_pred CCccEEEccCCCCChHHHHhhcCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEec
Q 009672 278 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 357 (529)
Q Consensus 278 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 357 (529)
...++++++++.+.. .|..+ .++++.|+++++.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++
T Consensus 14 ~~~~~l~~~~~~l~~-~p~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLDS-VPSGI--PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCSS-CCSCC--CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCccc-cCCCC--CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 356788888887763 33333 368899999999888777777888899999999999888777777888899999999
Q ss_pred cCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChh
Q 009672 358 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 437 (529)
Q Consensus 358 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~ 437 (529)
++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.++...+..+..+++|++|++++|.++..
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 99988887777788889999999999988877666677888999999999998888777788889999999999998887
Q ss_pred hhhhccCCCCCCeEecCCCCCCCh
Q 009672 438 GVKHIKDLSSLTLLNLSQNCNLTD 461 (529)
Q Consensus 438 ~~~~~~~~~~L~~L~l~~~~~l~~ 461 (529)
.+..+..+++|++|++++| .+..
T Consensus 171 ~~~~~~~l~~L~~L~l~~N-~~~c 193 (251)
T 3m19_A 171 PHGAFDRLGKLQTITLFGN-QFDC 193 (251)
T ss_dssp CTTTTTTCTTCCEEECCSC-CBCT
T ss_pred CHHHHhCCCCCCEEEeeCC-ceeC
Confidence 7777888899999999998 4443
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.71 E-value=3.4e-17 Score=151.49 Aligned_cols=172 Identities=26% Similarity=0.317 Sum_probs=121.5
Q ss_pred cCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcE
Q 009672 299 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 378 (529)
Q Consensus 299 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 378 (529)
..+++|+.|++.++.+... ..+..+++|+.|++++|.++...+ +..+++|+.|++++|.+... ..+..+++|+.
T Consensus 43 ~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~ 116 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKS 116 (291)
T ss_dssp HHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCE
T ss_pred hhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCE
Confidence 3467788888888876653 346677888888888887766543 67777888888888877663 23667777888
Q ss_pred EECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCC
Q 009672 379 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 458 (529)
Q Consensus 379 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~ 458 (529)
|++++|.+... ..+..+++|+.|++++|.++.. ..+..+++|++|++++|.+++..+ +..+++|++|++++| .
T Consensus 117 L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N-~ 189 (291)
T 1h6t_A 117 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN-H 189 (291)
T ss_dssp EECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS-C
T ss_pred EECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCC-c
Confidence 88877777763 3566777777777777777765 356677777777777777776544 666777777777777 6
Q ss_pred CChhHHHHHhCCCCCCeeeccCCccCh
Q 009672 459 LTDKTLELISGLTGLVSLNVSNSRITS 485 (529)
Q Consensus 459 l~~~~~~~l~~l~~L~~L~l~~~~~~~ 485 (529)
+++.. .+..+++|+.|++++|++..
T Consensus 190 i~~l~--~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 190 ISDLR--ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCBCG--GGTTCTTCSEEEEEEEEEEC
T ss_pred CCCCh--hhccCCCCCEEECcCCcccC
Confidence 66542 36667777777777777665
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.68 E-value=1.9e-16 Score=146.44 Aligned_cols=172 Identities=28% Similarity=0.365 Sum_probs=129.8
Q ss_pred hcCCCccEEEccCCCCChHHHHhhcCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCe
Q 009672 275 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 354 (529)
Q Consensus 275 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 354 (529)
..+++|+.|+++++.+... ..+..+++|+.|++++|.+....+ +..+++|+.|++++|.+... ..+..+++|+.
T Consensus 43 ~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~ 116 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKS 116 (291)
T ss_dssp HHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCE
T ss_pred hhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCE
Confidence 3566788888888877643 236678888888888887776443 77788888888888887664 33677888888
Q ss_pred EeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCC
Q 009672 355 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 434 (529)
Q Consensus 355 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l 434 (529)
|++++|.+.+. ..+..+++|+.|++++|.+... ..++.+++|+.|++++|.+++..+ +..+++|+.|++++|.+
T Consensus 117 L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i 190 (291)
T 1h6t_A 117 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 190 (291)
T ss_dssp EECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcC
Confidence 88888887764 4567778888888888888774 467788888888888888877655 77788888888888888
Q ss_pred ChhhhhhccCCCCCCeEecCCCCCCCh
Q 009672 435 TDAGVKHIKDLSSLTLLNLSQNCNLTD 461 (529)
Q Consensus 435 ~~~~~~~~~~~~~L~~L~l~~~~~l~~ 461 (529)
++. ..+..+++|+.|++++| .++.
T Consensus 191 ~~l--~~l~~l~~L~~L~l~~n-~i~~ 214 (291)
T 1h6t_A 191 SDL--RALAGLKNLDVLELFSQ-ECLN 214 (291)
T ss_dssp CBC--GGGTTCTTCSEEEEEEE-EEEC
T ss_pred CCC--hhhccCCCCCEEECcCC-cccC
Confidence 765 24777888888888888 4443
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.68 E-value=4.9e-17 Score=141.31 Aligned_cols=153 Identities=21% Similarity=0.300 Sum_probs=98.7
Q ss_pred CCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEE
Q 009672 349 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 428 (529)
Q Consensus 349 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ 428 (529)
+++|+.|++++|.+.+.. .+..+++|++|++++|.+... ..+..+++|+.|++++|.+++..+..+..+++|++|+
T Consensus 43 l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred cCCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 345555566555555322 355556666666666655442 3455667777777777777665555666777777777
Q ss_pred ccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccChhHHHhccCCCCCcEEeecCccCC
Q 009672 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 508 (529)
Q Consensus 429 l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 508 (529)
+++|.+++..+..+..+++|++|++++|..+++.. .+..+++|+.|++++|.+.+.. .+..+++|+.|++++|++.
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC---
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCcccC
Confidence 77777776666667777777777777773255542 4677778888888888777643 5677788888888888765
Q ss_pred h
Q 009672 509 A 509 (529)
Q Consensus 509 ~ 509 (529)
.
T Consensus 195 ~ 195 (197)
T 4ezg_A 195 G 195 (197)
T ss_dssp -
T ss_pred C
Confidence 3
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.67 E-value=2e-17 Score=156.32 Aligned_cols=282 Identities=16% Similarity=0.103 Sum_probs=150.6
Q ss_pred CCccEEEccCCCCCHHHHHHhhc-CCCCCeEecCCCcCC--hhhhHhhhcCCCccEEEccCCCCChHHHHhhcC------
Q 009672 230 QKLTLLNLEGCPVTAACLDSLSA-LGSLFYLNLNRCQLS--DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG------ 300 (529)
Q Consensus 230 ~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~--~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~------ 300 (529)
++++.|.+++. +.......+.. +++|+.|++++|.+. ..... ..+.+..+.+..+.+. ...|..
T Consensus 25 ~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~~I~---~~aF~~~~~~~~ 97 (329)
T 3sb4_A 25 NSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMANFVP---AYAFSNVVNGVT 97 (329)
T ss_dssp HHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTTEEC---TTTTEEEETTEE
T ss_pred CceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCccc---cccccccccccccccC---HHHhcccccccc
Confidence 56777888764 23333344555 788999999888776 21111 1122333444444332 234566
Q ss_pred --CCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCC----CCChhhhhhhcCCC
Q 009672 301 --LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT----GISDGSLRKLAGLS 374 (529)
Q Consensus 301 --~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~----~~~~~~~~~l~~~~ 374 (529)
+++|+.+.+.+ .+..+...+|..|++|+.+++..+.+.......+..+.++..+..... .........+.++.
T Consensus 98 ~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~ 176 (329)
T 3sb4_A 98 KGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGE 176 (329)
T ss_dssp EECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESC
T ss_pred cccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccc
Confidence 88888888887 677777777888888888888888777666667777666666655442 11222223344555
Q ss_pred CCc-EEECCCCCCCHHHHHHHh---cCCCCCEEecCCCCCChHHHHhh-hcCCCCcEEEccCCCCChhhhhhccCCCCCC
Q 009672 375 SLK-SLNLDARQITDTGLAALT---SLTGLTHLDLFGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 449 (529)
Q Consensus 375 ~L~-~L~l~~~~~~~~~~~~l~---~~~~L~~L~l~~~~l~~~~~~~~-~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~ 449 (529)
.|+ .+.+..... .....+. ...+++.+.+.+. +.......+ ..|++|+++++++|+++.++..+|.++++|+
T Consensus 177 ~L~~~i~~~~~~~--l~~~~~~~~~~~~~~~~l~~~~~-l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~ 253 (329)
T 3sb4_A 177 PLETTIQVGAMGK--LEDEIMKAGLQPRDINFLTIEGK-LDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLL 253 (329)
T ss_dssp CCEEEEEECTTCC--HHHHHHHTTCCGGGCSEEEEEEC-CCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCC
T ss_pred ccceeEEecCCCc--HHHHHhhcccCccccceEEEeee-ecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCC
Confidence 665 444432211 1111111 2234444444433 222111112 2355555555555555555555555555555
Q ss_pred eEecCCCCCCChhHHHHHhCCCCCC-eeeccCCccChhHHHhccCCCCCcEEeecCccCChhHHHHhhcCCCCCceecC
Q 009672 450 LLNLSQNCNLTDKTLELISGLTGLV-SLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 527 (529)
Q Consensus 450 ~L~l~~~~~l~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~l~~l~ 527 (529)
+|++.+| ++.+...+|.+|++|+ .+++.+ .+......+|..|++|+.|++.+|.++..+...+. .+++|+.++
T Consensus 254 ~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~--~~~~L~~ly 327 (329)
T 3sb4_A 254 KIKLPHN--LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFG--NGVPSKLIY 327 (329)
T ss_dssp EEECCTT--CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTC--TTCCCCEEE
T ss_pred EEECCcc--cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhc--CCcchhhhc
Confidence 5555554 4444445555555555 555555 44444445555555555555555555554444444 455555543
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.66 E-value=3.8e-17 Score=143.51 Aligned_cols=162 Identities=18% Similarity=0.171 Sum_probs=102.6
Q ss_pred CCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEec
Q 009672 326 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 405 (529)
Q Consensus 326 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 405 (529)
++++.|++++|.+.......+..+++|+.|++++|.+.......+..+++|++|++++|.+....+..+..+++|+.|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 35555555555555444444555566666666666555544444556666666666666666544444566667777777
Q ss_pred CCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccCh
Q 009672 406 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 485 (529)
Q Consensus 406 ~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~ 485 (529)
++|.++...+..+.++++|++|++++|.+++.....+..+++|++|++++| .+. +.++.|+.|+++.|.+++
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~~~-------~~~~~l~~L~~~~n~~~g 179 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN-PWD-------CTCPGIRYLSEWINKHSG 179 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC-CBC-------CCTTTTHHHHHHHHHCTT
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCC-Cee-------cCCCCHHHHHHHHHhCCc
Confidence 777776665555667777777777777777665555667777777777777 332 245677777777777777
Q ss_pred hHHHhccCCC
Q 009672 486 AGLRHLKPLK 495 (529)
Q Consensus 486 ~~~~~~~~~~ 495 (529)
..+..++.++
T Consensus 180 ~ip~~~~~l~ 189 (208)
T 2o6s_A 180 VVRNSAGSVA 189 (208)
T ss_dssp TBBCTTSSBC
T ss_pred eeeccCcccc
Confidence 6665555444
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.66 E-value=1e-16 Score=162.52 Aligned_cols=174 Identities=26% Similarity=0.313 Sum_probs=130.1
Q ss_pred cCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcE
Q 009672 299 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 378 (529)
Q Consensus 299 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 378 (529)
..+++|+.|++.++.+... ..+..+++|+.|++++|.+....+ +..+++|+.|++++|.+... ..+..+++|+.
T Consensus 40 ~~L~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~ 113 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKLKS 113 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--TTSTTCTTCCE
T ss_pred hcCCCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--hhhccCCCCCE
Confidence 4567788888888877653 246778888888888888776544 67788888888888877763 35777788888
Q ss_pred EECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCC
Q 009672 379 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 458 (529)
Q Consensus 379 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~ 458 (529)
|++++|.+... ..+..+++|+.|++++|.++.. ..+..+++|+.|++++|.+.+..+ +..+++|+.|+|++| .
T Consensus 114 L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N-~ 186 (605)
T 1m9s_A 114 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN-H 186 (605)
T ss_dssp EECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS-C
T ss_pred EEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCC-C
Confidence 88888887763 4567788888888888877775 456778888888888888776644 677788888888888 6
Q ss_pred CChhHHHHHhCCCCCCeeeccCCccChhH
Q 009672 459 LTDKTLELISGLTGLVSLNVSNSRITSAG 487 (529)
Q Consensus 459 l~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 487 (529)
+++. ..+..+++|+.|++++|++....
T Consensus 187 i~~l--~~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 187 ISDL--RALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp CCBC--GGGTTCTTCSEEECCSEEEECCC
T ss_pred CCCC--hHHccCCCCCEEEccCCcCcCCc
Confidence 6664 34677788888888888776543
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.3e-16 Score=150.68 Aligned_cols=219 Identities=14% Similarity=0.111 Sum_probs=137.6
Q ss_pred CCCccEEEccCCCCChHHHHhhcCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCc----cChhhhhhccCCCCC
Q 009672 277 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ----VGSSGLRHLSGLTNL 352 (529)
Q Consensus 277 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~----~~~~~~~~~~~~~~L 352 (529)
+++|+.+.+.. .+.......|..|++|+.+.+.++.+..+...+|..+.++..+...... ........+..+..|
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 77788887776 5555445567777888888887777666666667766666666554421 111112223445555
Q ss_pred C-eEeccCCCCChhhhhhhc---CCCCCcEEECCCCCCCHHHHHHHh-cCCCCCEEecCCCCCChHHHHhhhcCCCCcEE
Q 009672 353 E-SINLSFTGISDGSLRKLA---GLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 427 (529)
Q Consensus 353 ~-~L~l~~~~~~~~~~~~l~---~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L 427 (529)
+ .+.+.... ......+. ...++..+.+.+. +.......+. .|++|+.+++++|.++..+..+|.+|.+|+++
T Consensus 179 ~~~i~~~~~~--~l~~~~~~~~~~~~~~~~l~~~~~-l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l 255 (329)
T 3sb4_A 179 ETTIQVGAMG--KLEDEIMKAGLQPRDINFLTIEGK-LDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKI 255 (329)
T ss_dssp EEEEEECTTC--CHHHHHHHTTCCGGGCSEEEEEEC-CCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEE
T ss_pred ceeEEecCCC--cHHHHHhhcccCccccceEEEeee-ecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEE
Confidence 5 34443221 11111111 2345666666554 3232233333 47778888888777777777777778888888
Q ss_pred EccCCCCChhhhhhccCCCCCC-eEecCCCCCCChhHHHHHhCCCCCCeeeccCCccChhHHHhccCCCCCcEEee
Q 009672 428 EICGGGLTDAGVKHIKDLSSLT-LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 502 (529)
Q Consensus 428 ~l~~~~l~~~~~~~~~~~~~L~-~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 502 (529)
++.+| +..++..+|.++++|+ .+++.++ ++.+...+|.+|++|+.|+++++.+......+|..|++|+.|+.
T Consensus 256 ~l~~n-i~~I~~~aF~~~~~L~~~l~l~~~--l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 256 KLPHN-LKTIGQRVFSNCGRLAGTLELPAS--VTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCEEEEECTT--CCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred ECCcc-cceehHHHhhCChhccEEEEEccc--ceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 88776 6666677777777787 7777773 66666677777888888888777777777777777777777753
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.64 E-value=3.9e-16 Score=158.18 Aligned_cols=173 Identities=28% Similarity=0.361 Sum_probs=141.7
Q ss_pred hhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCC
Q 009672 274 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353 (529)
Q Consensus 274 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 353 (529)
+..++.|+.|+++++.+... ..+..+++|+.|++++|.+....+ +..+++|+.|++++|.+... ..+..+++|+
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~ 112 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKLK 112 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--TTSTTCTTCC
T ss_pred hhcCCCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--hhhccCCCCC
Confidence 34667888999998887653 247788999999999998876544 77889999999999988764 3578889999
Q ss_pred eEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCC
Q 009672 354 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 433 (529)
Q Consensus 354 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~ 433 (529)
.|++++|.+... ..+..+++|+.|++++|.+... ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.
T Consensus 113 ~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~ 186 (605)
T 1m9s_A 113 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 186 (605)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCC
Confidence 999999988864 4577889999999999988875 567888999999999999888766 7889999999999999
Q ss_pred CChhhhhhccCCCCCCeEecCCCCCCCh
Q 009672 434 LTDAGVKHIKDLSSLTLLNLSQNCNLTD 461 (529)
Q Consensus 434 l~~~~~~~~~~~~~L~~L~l~~~~~l~~ 461 (529)
+++. ..+..+++|+.|++++| .+..
T Consensus 187 i~~l--~~l~~l~~L~~L~L~~N-~l~~ 211 (605)
T 1m9s_A 187 ISDL--RALAGLKNLDVLELFSQ-ECLN 211 (605)
T ss_dssp CCBC--GGGTTCTTCSEEECCSE-EEEC
T ss_pred CCCC--hHHccCCCCCEEEccCC-cCcC
Confidence 8875 45788899999999998 4544
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.63 E-value=4.2e-16 Score=135.40 Aligned_cols=151 Identities=23% Similarity=0.344 Sum_probs=71.6
Q ss_pred CCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEE
Q 009672 301 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 380 (529)
Q Consensus 301 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 380 (529)
+++|+.|+++++.+.... .+..+++|+.|++++|.+... ..+..+++|+.|++++|.+....+..++.++
T Consensus 43 l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~------ 112 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLT------ 112 (197)
T ss_dssp HHTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTTCBGGGSCCCTTCT------
T ss_pred cCCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCccCcccChhhcCCC------
Confidence 345555555555544322 344455555555555543322 2344445555555555554443344444444
Q ss_pred CCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCC-CChhhhhhccCCCCCCeEecCCCCCC
Q 009672 381 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG-LTDAGVKHIKDLSSLTLLNLSQNCNL 459 (529)
Q Consensus 381 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~~~L~~L~l~~~~~l 459 (529)
+|+.|++++|.+++..+..+..+++|++|++++|. +++. + .+..+++|++|++++| .+
T Consensus 113 ------------------~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~-~-~l~~l~~L~~L~l~~n-~i 171 (197)
T 4ezg_A 113 ------------------SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-M-PLKTLPELKSLNIQFD-GV 171 (197)
T ss_dssp ------------------TCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC-G-GGGGCSSCCEEECTTB-CC
T ss_pred ------------------CCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc-H-hhcCCCCCCEEECCCC-CC
Confidence 44555555444444444444445555555555554 3332 1 3444555555555555 44
Q ss_pred ChhHHHHHhCCCCCCeeeccCCccC
Q 009672 460 TDKTLELISGLTGLVSLNVSNSRIT 484 (529)
Q Consensus 460 ~~~~~~~l~~l~~L~~L~l~~~~~~ 484 (529)
++.. .+..+++|+.|++++|++.
T Consensus 172 ~~~~--~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 172 HDYR--GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CCCT--TGGGCSSCCEEEECBC---
T ss_pred cChH--HhccCCCCCEEEeeCcccC
Confidence 4422 3445555666666555543
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.5e-16 Score=139.62 Aligned_cols=171 Identities=18% Similarity=0.141 Sum_probs=137.0
Q ss_pred CeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCC
Q 009672 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 408 (529)
Q Consensus 329 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 408 (529)
+.++..++.++.... .-.++++.|++++|.+.......+..+++|++|++++|.+....+..+..+++|+.|++++|
T Consensus 10 ~~v~c~~~~l~~~p~---~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRTSVPT---GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCSSCCS---CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCccCCCC---CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 455555555443321 22468999999999988777777888999999999999998765566778899999999999
Q ss_pred CCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccChhHH
Q 009672 409 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488 (529)
Q Consensus 409 ~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 488 (529)
.++...+..+..+++|++|++++|.++...+..+..+++|++|++++| .++...+..+..+++|+.|++++|++..
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~~--- 162 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPWDC--- 162 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCBCC---
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCCeec---
Confidence 998877777788999999999999998876767888899999999999 7887666667889999999999997763
Q ss_pred HhccCCCCCcEEeecCccCChh
Q 009672 489 RHLKPLKNLRSLTLESCKVTAN 510 (529)
Q Consensus 489 ~~~~~~~~L~~L~l~~~~~~~~ 510 (529)
.+++|+.|+++.|+++..
T Consensus 163 ----~~~~l~~L~~~~n~~~g~ 180 (208)
T 2o6s_A 163 ----TCPGIRYLSEWINKHSGV 180 (208)
T ss_dssp ----CTTTTHHHHHHHHHCTTT
T ss_pred ----CCCCHHHHHHHHHhCCce
Confidence 567888888888877643
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1.4e-16 Score=140.88 Aligned_cols=151 Identities=19% Similarity=0.273 Sum_probs=86.5
Q ss_pred CeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCC
Q 009672 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 408 (529)
Q Consensus 329 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 408 (529)
+.++.+++.++..+.. + .++++.|++++|.+.......+..+++|+.|++++|.+....+..|..+++|+.|++++|
T Consensus 14 ~~v~c~~~~l~~iP~~-l--~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTN-L--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSCCSS-C--CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCcCCCc-c--CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 4455555554433211 1 145666666666666555555566666666666666666554455556666666666666
Q ss_pred CCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCcc
Q 009672 409 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 483 (529)
Q Consensus 409 ~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 483 (529)
.++..++..+..+++|++|++++|.++...+..+..+++|++|++++| .++...+..+..+++|+.|++++|++
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 666555555555666666666666666555555555666666666666 55554444555555666666666554
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.5e-16 Score=152.28 Aligned_cols=176 Identities=21% Similarity=0.237 Sum_probs=99.9
Q ss_pred CEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhcc-CCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCC
Q 009672 305 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS-GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 383 (529)
Q Consensus 305 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 383 (529)
+.++..++.+..+. ..+ .+.++.|++++|.++......+. .+++|+.|++++|.+....+..|..+++|+.|++++
T Consensus 21 ~~l~c~~~~l~~iP-~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPNVP-QSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSSCC-SSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCccC-ccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 45666666554422 111 23466666666666655555454 566666666666666665555566666666666666
Q ss_pred CCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhc---cCCCCCCeEecCCCCCCC
Q 009672 384 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI---KDLSSLTLLNLSQNCNLT 460 (529)
Q Consensus 384 ~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~---~~~~~L~~L~l~~~~~l~ 460 (529)
|.+....+..|..+++|+.|++++|.++...+..|..+++|+.|++++|.++......+ ..+++|+.|++++| .++
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~ 176 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSN-KLK 176 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSS-CCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCC-CCC
Confidence 66665544445566666666666666665555555666666666666666655444333 34555666666665 555
Q ss_pred hhHHHHHhCCCC--CCeeeccCCccC
Q 009672 461 DKTLELISGLTG--LVSLNVSNSRIT 484 (529)
Q Consensus 461 ~~~~~~l~~l~~--L~~L~l~~~~~~ 484 (529)
...+..+..++. ++.|++++|++.
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred ccCHHHhhhccHhhcceEEecCCCcc
Confidence 554455555554 255555555543
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.62 E-value=3.1e-16 Score=149.41 Aligned_cols=137 Identities=14% Similarity=0.080 Sum_probs=68.2
Q ss_pred CceeEEEecCcccCchhhhhccCCCCCCeEeccCCcccCchhhhhccCCCCCCEEEcC-CCCccchhHHHHHhCCCCCCE
Q 009672 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR-RNNAITAQGMKAFAGLINLVK 135 (529)
Q Consensus 57 ~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~~L~~ 135 (529)
+++++|+|++|+++.....+|+.+++|++|+|++|...+......|.++++|+++... .|. ++...+..|..+++|++
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~-l~~l~~~~f~~l~~L~~ 108 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN-LLYINPEAFQNLPNLQY 108 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT-CCEECTTSBCCCTTCCE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc-ccccCchhhhhcccccc
Confidence 4566666666666655555566666666666666532233334455556555543332 233 44444555555666666
Q ss_pred EeccCccccccccccccCCCcCcEEeccCCcccCccccccccCC-CCCCeEEccCCCCCh
Q 009672 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL-TNLKSLQISCSKVTD 194 (529)
Q Consensus 136 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~ 194 (529)
|++++|.........+....++..+++.+++.+.......+..+ ..++.|++++|.++.
T Consensus 109 L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 109 LLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp EEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred ccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 66655533222223333444455555554444444333334333 235555555555543
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.62 E-value=1e-15 Score=148.30 Aligned_cols=335 Identities=15% Similarity=0.103 Sum_probs=172.7
Q ss_pred ccCchhhhhccCCCCCCeEeccCCcccCchhhhhccCCCCCCEEEcCCCCccchhHHHHHhCCCCCCEEeccCccccccc
Q 009672 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGG 147 (529)
Q Consensus 68 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 147 (529)
.++.....+|..|.+|+.+.|.. .+..++..+|..|++|+.++++.+ ++......|..|.+|+.+.+... .....
T Consensus 58 ~VtsIg~~AF~~c~~L~~i~lp~--~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~c~~L~~i~~p~~-l~~i~ 132 (394)
T 4fs7_A 58 DVVSIGYAAFQGCRKVTEIKIPS--TVREIGEFAFENCSKLEIINIPDS--VKMIGRCTFSGCYALKSILLPLM-LKSIG 132 (394)
T ss_dssp EEEEECTTTTTTCTTEEEEECCT--TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCCCCCCTT-CCEEC
T ss_pred eEeEhHHHHhhCCCCceEEEeCC--CccCcchhHhhCCCCCcEEEeCCC--ceEccchhhcccccchhhcccCc-eeeec
Confidence 46667778888999999999974 477888888999999999999765 44555667888888888877653 23333
Q ss_pred cccccCCCcCcEEeccCCcccCccccccccCCCCCCeEEccCCCCChhHHHHhhccCccchhhhhhhhHHHhhhhhhhhc
Q 009672 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLT 227 (529)
Q Consensus 148 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (529)
..+|..+..++...... .......++..|++|+.+.+..+ +...+...| .
T Consensus 133 ~~aF~~~~~~~~~~~~~---~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F--------------------------~ 182 (394)
T 4fs7_A 133 VEAFKGCDFKEITIPEG---VTVIGDEAFATCESLEYVSLPDS-METLHNGLF--------------------------S 182 (394)
T ss_dssp TTTTTTCCCSEEECCTT---CCEECTTTTTTCTTCCEEECCTT-CCEECTTTT--------------------------T
T ss_pred ceeeecccccccccCcc---ccccchhhhcccCCCcEEecCCc-cceeccccc--------------------------c
Confidence 44555555444333332 22333456777778887777543 222222222 3
Q ss_pred ccCCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEE
Q 009672 228 SLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 307 (529)
Q Consensus 228 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 307 (529)
.+.+|+.+.+..+ +......+|.++..|+.+.+..+...- .+.......|+.+.+... ........+..+..++.+
T Consensus 183 ~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i--~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~ 258 (394)
T 4fs7_A 183 GCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYL--GDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESI 258 (394)
T ss_dssp TCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEE--CTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEE
T ss_pred CCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEe--ehhhcccCCCceEEECCC-ceecccccccccccceeE
Confidence 3366666666543 222223455566666666655432211 011122345555555322 111112234455555555
Q ss_pred ECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCC
Q 009672 308 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 387 (529)
Q Consensus 308 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 387 (529)
.+..+. ..+....+..+..++.+......+. ...+..+.+|+.+.+..+ +......+
T Consensus 259 ~~~~~~-~~i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~a------------------ 315 (394)
T 4fs7_A 259 SIQNNK-LRIGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEA------------------ 315 (394)
T ss_dssp EECCTT-CEECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTT------------------
T ss_pred EcCCCc-ceeeccccccccccceeccCceeec---cccccccccccccccccc-cceechhh------------------
Confidence 554432 2223334444455554444332211 122334444444444322 33333334
Q ss_pred HHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHH
Q 009672 388 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 467 (529)
Q Consensus 388 ~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l 467 (529)
|..|.+|+.+++.. .++..+..+|.+|.+|+.+.+..+ ++..+..+|.+|++|+.+++..+ +... ...|
T Consensus 316 ------F~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~--~~~~-~~~F 384 (394)
T 4fs7_A 316 ------FESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR--LEQY-RYDF 384 (394)
T ss_dssp ------TTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG--GGGG-GGGB
T ss_pred ------hcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC--CEEh-hhee
Confidence 44455555555543 244444445555555555555443 44444555555555555555543 2222 2234
Q ss_pred hCCCCCCe
Q 009672 468 SGLTGLVS 475 (529)
Q Consensus 468 ~~l~~L~~ 475 (529)
.++++|+.
T Consensus 385 ~~c~~L~~ 392 (394)
T 4fs7_A 385 EDTTKFKW 392 (394)
T ss_dssp CTTCEEEE
T ss_pred cCCCCCcE
Confidence 44555544
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.4e-16 Score=139.25 Aligned_cols=152 Identities=19% Similarity=0.276 Sum_probs=86.9
Q ss_pred CeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhh-hhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCC
Q 009672 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 407 (529)
Q Consensus 329 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 407 (529)
+.++++++.++..+. .+ .+.++.|++++|.+....+ ..+..+++|+.|++++|.++...+..+..+++|+.|++++
T Consensus 14 ~~l~~s~n~l~~iP~-~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNKIPE-HI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSSCCS-CC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcccCcc-CC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 456666665544321 11 2345666666666655422 3355566666666666666655444555666666666666
Q ss_pred CCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccC
Q 009672 408 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484 (529)
Q Consensus 408 ~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 484 (529)
|.++...+..+..+++|++|++++|.++...+..+..+++|++|++++| .++...+..+..+++|+.|++++|++.
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 6666555555556666666666666666555555555666666666666 555555555555666666666666554
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.3e-15 Score=145.63 Aligned_cols=174 Identities=18% Similarity=0.175 Sum_probs=141.9
Q ss_pred cEEEccCCCCChHHHHhhcCCCCCCEEECCCCCCChhhhhhhc-CCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccC
Q 009672 281 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT-GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 359 (529)
Q Consensus 281 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 359 (529)
++++.+++.+.. .|..+ .+.++.|++++|.++......+. .+++|+.|++++|.+....+..+..+++|+.|++++
T Consensus 21 ~~l~c~~~~l~~-iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSS-CCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-cCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 578888877764 33322 35688999999988877776676 889999999999998887777788899999999999
Q ss_pred CCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhh---hcCCCCcEEEccCCCCCh
Q 009672 360 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL---RNFKNLRSLEICGGGLTD 436 (529)
Q Consensus 360 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~---~~~~~L~~L~l~~~~l~~ 436 (529)
|.+.......+..+++|+.|++++|.+....+..+..+++|+.|++++|.++..+...+ ..+++|+.|++++|.++.
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 99988777778888999999999999988767778888999999999999988766666 568899999999999988
Q ss_pred hhhhhccCCCC--CCeEecCCCC
Q 009672 437 AGVKHIKDLSS--LTLLNLSQNC 457 (529)
Q Consensus 437 ~~~~~~~~~~~--L~~L~l~~~~ 457 (529)
.....+..++. ++.|++++|+
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSC
T ss_pred cCHHHhhhccHhhcceEEecCCC
Confidence 77777777776 4889999984
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.60 E-value=7.7e-16 Score=136.01 Aligned_cols=150 Identities=22% Similarity=0.239 Sum_probs=114.1
Q ss_pred CEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCC
Q 009672 305 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 384 (529)
Q Consensus 305 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 384 (529)
+.++..++.++.+. ..+ .++++.|++++|.+....+..+..+++|+.|++++|.+....+..+.++++|++|++++|
T Consensus 14 ~~v~c~~~~l~~iP-~~l--~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIP-TNL--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSCC-SSC--CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCcCC-Ccc--CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 45666666655432 222 257888888888887766667777888888888888888776777888888888888888
Q ss_pred CCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCC
Q 009672 385 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 457 (529)
Q Consensus 385 ~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~ 457 (529)
.++..+...+..+++|+.|++++|.++...+..+..+++|+.|++++|.++...+..+..+++|++|++++|+
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 8877655566778888888888888887777777788888888888888887766677778888888888884
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.60 E-value=8.4e-16 Score=136.76 Aligned_cols=152 Identities=24% Similarity=0.228 Sum_probs=76.7
Q ss_pred CCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCC
Q 009672 328 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 407 (529)
Q Consensus 328 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 407 (529)
.+.++.+++.++.... .-.++|+.|++++|.+....+..+..+++|+.|++++|.+.......+..+++|+.|++++
T Consensus 21 ~~~v~c~~~~l~~ip~---~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPA---GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCSSCCS---CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcCccCC---CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 3455555554433321 1124556666666655554445555555555565555555544333444555555555555
Q ss_pred CCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccC
Q 009672 408 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484 (529)
Q Consensus 408 ~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 484 (529)
|+++...+..+..+++|++|++++|.++.. +..+..+++|++|++++| .++...+..+..+++|+.|++++|++.
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLTEL-PRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCSC-CTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CcCCccChhHhCcchhhCeEeccCCccccc-CcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 555554444445555555555555555432 333444555555555555 444443344444555555555555443
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.59 E-value=6.5e-16 Score=140.53 Aligned_cols=169 Identities=23% Similarity=0.293 Sum_probs=105.2
Q ss_pred CCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEEC
Q 009672 302 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 381 (529)
Q Consensus 302 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 381 (529)
.++..+.+.++.+.+.. .+..+++|+.|++++|.+.... .+..+++|+.|++++|.+.+..+ +..+++|+.|++
T Consensus 19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L 92 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence 34444555565554432 3456677777777777665442 45666777777777777766444 666777777777
Q ss_pred CCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCCh
Q 009672 382 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 461 (529)
Q Consensus 382 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~ 461 (529)
++|.+.... .+.. ++|+.|++++|++++.. .+..+++|++|++++|.+++.. .+..+++|++|++++| .+++
T Consensus 93 ~~N~l~~l~--~~~~-~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N-~i~~ 164 (263)
T 1xeu_A 93 NRNRLKNLN--GIPS-ACLSRLFLDNNELRDTD--SLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGN-EITN 164 (263)
T ss_dssp CSSCCSCCT--TCCC-SSCCEEECCSSCCSBSG--GGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTS-CCCB
T ss_pred CCCccCCcC--cccc-CcccEEEccCCccCCCh--hhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCC-cCcc
Confidence 777766532 1223 66777777777666642 3566677777777777666542 4556667777777776 5555
Q ss_pred hHHHHHhCCCCCCeeeccCCccChh
Q 009672 462 KTLELISGLTGLVSLNVSNSRITSA 486 (529)
Q Consensus 462 ~~~~~l~~l~~L~~L~l~~~~~~~~ 486 (529)
. ..+..+++|+.|++++|++...
T Consensus 165 ~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 165 T--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp C--TTSTTCCCCCEEEEEEEEEECC
T ss_pred h--HHhccCCCCCEEeCCCCcccCC
Confidence 4 4455666677777776666543
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.6e-16 Score=151.45 Aligned_cols=239 Identities=16% Similarity=0.115 Sum_probs=132.1
Q ss_pred cEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHH-HhhcCCCCCCEE-ECC
Q 009672 233 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL-VHLKGLTNLESL-NLD 310 (529)
Q Consensus 233 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L-~l~ 310 (529)
+.++.+++.++.. |..+ .++++.|++++|+++...+..|..+++|++|++++|.+.+..+ ..|.+++++.++ .+.
T Consensus 12 ~~v~C~~~~Lt~i-P~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVTEI-PSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCCSC-CTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCCcc-CcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 3455555555432 2222 2456677777776665555556666677777777666543322 235566665543 334
Q ss_pred CCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccC-CCCChhhhhhhcCC-CCCcEEECCCCCCCH
Q 009672 311 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGL-SSLKSLNLDARQITD 388 (529)
Q Consensus 311 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~ 388 (529)
.+.+....+..|..+++|+.|++++|.+.......+.....+..+++.+ +.+.......+..+ ..++.|++++|.++.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 4556555555666667777777776666544433333344555566544 34544444444443 246667777776665
Q ss_pred HHHHHHhcCCCCCEEecCC-CCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHH
Q 009672 389 TGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 467 (529)
Q Consensus 389 ~~~~~l~~~~~L~~L~l~~-~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l 467 (529)
.....+ ...+|+++.+.+ |.++..+...|.++++|++|++++|+++...... +.+|+.|.+.++.+++... .+
T Consensus 169 i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP--~l 242 (350)
T 4ay9_X 169 IHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLP--TL 242 (350)
T ss_dssp ECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCC--CT
T ss_pred CChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCC--Cc
Confidence 433222 334566666653 4566555556666777777777777766553333 3445555555544444332 25
Q ss_pred hCCCCCCeeeccC
Q 009672 468 SGLTGLVSLNVSN 480 (529)
Q Consensus 468 ~~l~~L~~L~l~~ 480 (529)
..+++|+.+++.+
T Consensus 243 ~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 243 EKLVALMEASLTY 255 (350)
T ss_dssp TTCCSCCEEECSC
T ss_pred hhCcChhhCcCCC
Confidence 5666777776654
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.59 E-value=9.6e-16 Score=148.56 Aligned_cols=336 Identities=15% Similarity=0.167 Sum_probs=200.9
Q ss_pred cCchhhhhccCCCCCCEEEcCCCCccchhHHHHHhCCCCCCEEeccCccccccccccccCCCcCcEEeccCCcccCcccc
Q 009672 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173 (529)
Q Consensus 94 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 173 (529)
+..++..+|..|++|+.+.++.+ ++.....+|.+|++|+.+.+.++ ....+..++..+..|+.+.+.. .+.....
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~--i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~--~l~~i~~ 133 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST--VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPL--MLKSIGV 133 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT--CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCT--TCCEECT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC--ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccC--ceeeecc
Confidence 55666777888888888888754 45555667778888888887653 2233445566677777666543 2333333
Q ss_pred ccccCCCCCCeEEccCCCCChhHHHHhhccCccchhhhhhhhHHHhhhhhhhhcccCCccEEEccCCCCCHHHHHHhhcC
Q 009672 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSAL 253 (529)
Q Consensus 174 ~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 253 (529)
.++..+..++ ..+.. .....+... +..|++|+.+.+.... .......|.++
T Consensus 134 ~aF~~~~~~~-~~~~~-~~~~i~~~a--------------------------F~~c~~L~~i~l~~~~-~~I~~~~F~~c 184 (394)
T 4fs7_A 134 EAFKGCDFKE-ITIPE-GVTVIGDEA--------------------------FATCESLEYVSLPDSM-ETLHNGLFSGC 184 (394)
T ss_dssp TTTTTCCCSE-EECCT-TCCEECTTT--------------------------TTTCTTCCEEECCTTC-CEECTTTTTTC
T ss_pred eeeecccccc-cccCc-cccccchhh--------------------------hcccCCCcEEecCCcc-ceeccccccCC
Confidence 4444443222 11111 111111111 2333555555554321 11122334444
Q ss_pred CCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEEc
Q 009672 254 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 333 (529)
Q Consensus 254 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 333 (529)
.+|+.+.+..+ +.......+..+..|+.+.+..+... .. ........|+.+.+
T Consensus 185 ~~L~~i~l~~~-------------------------~~~I~~~~F~~~~~L~~i~~~~~~~~-i~-~~~~~~~~l~~i~i 237 (394)
T 4fs7_A 185 GKLKSIKLPRN-------------------------LKIIRDYCFAECILLENMEFPNSLYY-LG-DFALSKTGVKNIII 237 (394)
T ss_dssp TTCCBCCCCTT-------------------------CCEECTTTTTTCTTCCBCCCCTTCCE-EC-TTTTTTCCCCEEEE
T ss_pred CCceEEEcCCC-------------------------ceEeCchhhccccccceeecCCCceE-ee-hhhcccCCCceEEE
Confidence 45554444332 11111223445555555555443211 11 11223456666666
Q ss_pred CCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChH
Q 009672 334 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 413 (529)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~ 413 (529)
... +.......+..+..++.+.+..+ ........+..+..++.+......+.. ..+..+.+|+.+.+..+ ++..
T Consensus 238 p~~-~~~i~~~~f~~~~~l~~~~~~~~-~~~i~~~~F~~~~~l~~~~~~~~~i~~---~~F~~~~~L~~i~l~~~-i~~I 311 (394)
T 4fs7_A 238 PDS-FTELGKSVFYGCTDLESISIQNN-KLRIGGSLFYNCSGLKKVIYGSVIVPE---KTFYGCSSLTEVKLLDS-VKFI 311 (394)
T ss_dssp CTT-CCEECSSTTTTCSSCCEEEECCT-TCEECSCTTTTCTTCCEEEECSSEECT---TTTTTCTTCCEEEECTT-CCEE
T ss_pred CCC-ceecccccccccccceeEEcCCC-cceeeccccccccccceeccCceeecc---ccccccccccccccccc-ccee
Confidence 433 22233344556677777777654 233344566677888887776654433 35668889999998764 6667
Q ss_pred HHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccChhHHHhccC
Q 009672 414 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 493 (529)
Q Consensus 414 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 493 (529)
+..+|.+|.+|+.+++.. .++.++..+|.+|.+|+.+++..+ ++.+...+|.+|++|+.+.+..+ +... ..+|..
T Consensus 312 ~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~~-~~~~-~~~F~~ 386 (394)
T 4fs7_A 312 GEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELPKR-LEQY-RYDFED 386 (394)
T ss_dssp CTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEEGG-GGGG-GGGBCT
T ss_pred chhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEECCC-CEEh-hheecC
Confidence 777899999999999974 477788889999999999999876 77777788999999999999765 3222 357889
Q ss_pred CCCCcEEe
Q 009672 494 LKNLRSLT 501 (529)
Q Consensus 494 ~~~L~~L~ 501 (529)
|++|+.+.
T Consensus 387 c~~L~~IK 394 (394)
T 4fs7_A 387 TTKFKWIK 394 (394)
T ss_dssp TCEEEEEC
T ss_pred CCCCcEEC
Confidence 99998763
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.4e-15 Score=134.43 Aligned_cols=149 Identities=20% Similarity=0.228 Sum_probs=105.8
Q ss_pred CEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhh-hhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCC
Q 009672 305 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL-RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 383 (529)
Q Consensus 305 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 383 (529)
+.++++++.++.+ +..+ .+.++.|++++|.++...+ ..+..+++|+.|++++|.+.......+..+++|++|++++
T Consensus 14 ~~l~~s~n~l~~i-P~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNKI-PEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSSC-CSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcccC-ccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 4677777766543 2222 2456777777777766532 3456777778888877777776666677777788888877
Q ss_pred CCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCC
Q 009672 384 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 456 (529)
Q Consensus 384 ~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~ 456 (529)
|.+....+..+..+++|+.|++++|.++...+..+..+++|++|++++|.++...+..+..+++|++|++++|
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCc
Confidence 7777765566777777888888877777776667777777888888777777776667777777888888777
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.58 E-value=2.6e-15 Score=144.60 Aligned_cols=264 Identities=14% Similarity=0.134 Sum_probs=201.6
Q ss_pred CCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEEC
Q 009672 230 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 309 (529)
Q Consensus 230 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 309 (529)
..++.+.+... +......+|.++ +|+.+.+..+ +......+|.. .+|+.+.+.. .+.......|..|++|+.+++
T Consensus 113 ~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l 187 (401)
T 4fdw_A 113 KGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADL 187 (401)
T ss_dssp SSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred CCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence 67777777653 333344566665 7999998765 55545556665 4699999875 454444556888999999999
Q ss_pred CCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHH
Q 009672 310 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 389 (529)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 389 (529)
..+.+..+....|. +.+|+.+.+..+ +.......+..|++|+.+.+..+ +......+|.+ .+|+.+.+. +.+...
T Consensus 188 ~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I 262 (401)
T 4fdw_A 188 SKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNI 262 (401)
T ss_dssp TTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEE
T ss_pred CCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEE
Confidence 98888877666776 589999998754 66666777888999999999864 66666677777 689999984 556665
Q ss_pred HHHHHhcCCCCCEEecCCCCCC-----hHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHH
Q 009672 390 GLAALTSLTGLTHLDLFGARIT-----DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 464 (529)
Q Consensus 390 ~~~~l~~~~~L~~L~l~~~~l~-----~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 464 (529)
+...|..|++|+.+.+.++.+. ..+..+|.+|++|+.+.+. +.+...+..+|.+|++|+.+.|.++ ++.+..
T Consensus 263 ~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~ 339 (401)
T 4fdw_A 263 ASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN--VTQINF 339 (401)
T ss_dssp CTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT--CCEECT
T ss_pred ChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc--ccEEcH
Confidence 5677889999999999887654 4567788999999999998 4588888888999999999999775 777777
Q ss_pred HHHhCCCCCCeeeccCCccChhHHHhccCCC-CCcEEeecCccC
Q 009672 465 ELISGLTGLVSLNVSNSRITSAGLRHLKPLK-NLRSLTLESCKV 507 (529)
Q Consensus 465 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~ 507 (529)
.+|.++ +|+.+.+++|.........|..++ .++.|.+..+.+
T Consensus 340 ~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 340 SAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp TSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred HhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 788888 999999999987766666777774 788999887743
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.5e-14 Score=136.43 Aligned_cols=185 Identities=22% Similarity=0.280 Sum_probs=136.8
Q ss_pred CCCCCeEEcCCCccChhhhhhcc-----CCCCCCeEeccCCCCChhhhhhhc-CCCCCcEEECCCCCCCHHHHHHHh---
Q 009672 325 LCNLKCLELSDTQVGSSGLRHLS-----GLTNLESINLSFTGISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALT--- 395 (529)
Q Consensus 325 ~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~l~--- 395 (529)
.+.|+.|++++|.++......+. .+++|+.|++++|.+++.....+. .+++|+.|++++|.+++.+...+.
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 46899999999998876554433 236899999999999876655543 356899999999999887666553
Q ss_pred --cCCCCCEEecCCCCCChHHHHh----hhcCCCCcEEEccCCCCChhhh----hhccCCCCCCeEecCCCCCCChhHHH
Q 009672 396 --SLTGLTHLDLFGARITDSGAAY----LRNFKNLRSLEICGGGLTDAGV----KHIKDLSSLTLLNLSQNCNLTDKTLE 465 (529)
Q Consensus 396 --~~~~L~~L~l~~~~l~~~~~~~----~~~~~~L~~L~l~~~~l~~~~~----~~~~~~~~L~~L~l~~~~~l~~~~~~ 465 (529)
..++|+.|++++|.+++.+... +..+++|++|++++|.+++.+. ..+...++|++|++++| .+++....
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~~g~~ 229 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN-GAGDTAAL 229 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCHHHHH
Confidence 4678999999999988755443 3678899999999999988764 34566788999999999 78875443
Q ss_pred ----HHhCCCCCCeeeccCCccChhHHHhccCC---C--CCcEEe--ecCccCChh
Q 009672 466 ----LISGLTGLVSLNVSNSRITSAGLRHLKPL---K--NLRSLT--LESCKVTAN 510 (529)
Q Consensus 466 ----~l~~l~~L~~L~l~~~~~~~~~~~~~~~~---~--~L~~L~--l~~~~~~~~ 510 (529)
.+..+++|+.|++++|++++.+...+... . .|+.+. +.++.+++.
T Consensus 230 ~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~~ 285 (372)
T 3un9_A 230 ALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEY 285 (372)
T ss_dssp HHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CHHH
T ss_pred HHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCHH
Confidence 44567899999999999988777665332 2 277777 777777655
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.56 E-value=8.7e-15 Score=146.63 Aligned_cols=187 Identities=16% Similarity=0.135 Sum_probs=138.5
Q ss_pred CCccEEEccCCCCChHHHHhhcCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEec
Q 009672 278 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 357 (529)
Q Consensus 278 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 357 (529)
.+++.|+++++.+.+ .|..+ .++|+.|++++|.+..+. ..+++|+.|++++|.++... . +.. +|+.|++
T Consensus 59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~ip-~-l~~--~L~~L~L 127 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALISLP----ELPASLEYLDACDNRLSTLP-E-LPA--SLKHLDV 127 (571)
T ss_dssp TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCC-C-CCT--TCCEEEC
T ss_pred CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCCcc-h-hhc--CCCEEEC
Confidence 489999999988875 44333 478999999999887533 45789999999999887643 2 443 8999999
Q ss_pred cCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChh
Q 009672 358 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 437 (529)
Q Consensus 358 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~ 437 (529)
++|.++.... .+++|+.|++++|.++..+. .+++|+.|++++|.++..+. +. ++|+.|++++|.++..
T Consensus 128 s~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~~l 195 (571)
T 3cvr_A 128 DNNQLTMLPE----LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLESL 195 (571)
T ss_dssp CSSCCSCCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCSSC
T ss_pred CCCcCCCCCC----cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCCch
Confidence 9998877333 56889999999988876432 56788999999988887544 43 8899999999888754
Q ss_pred hhhhccCCCCC-------CeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccChhHHHhccC
Q 009672 438 GVKHIKDLSSL-------TLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 493 (529)
Q Consensus 438 ~~~~~~~~~~L-------~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 493 (529)
.. +.. +| +.|++++| .++. +|..+..+++|+.|++++|++++..+..+..
T Consensus 196 p~--~~~--~L~~~~~~L~~L~Ls~N-~l~~-lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 196 PA--VPV--RNHHSEETEIFFRCREN-RITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp CC--CC----------CCEEEECCSS-CCCC-CCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred hh--HHH--hhhcccccceEEecCCC-ccee-cCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 32 443 56 88888888 6775 4555666888888888888888877766544
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.56 E-value=6.9e-15 Score=147.36 Aligned_cols=189 Identities=21% Similarity=0.135 Sum_probs=150.7
Q ss_pred CCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEEc
Q 009672 254 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 333 (529)
Q Consensus 254 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 333 (529)
.+|+.|+++++.+... +..+ .++|++|++++|.+.. .| ..+++|+.|++++|.++.+ +. +.. +|+.|++
T Consensus 59 ~~L~~L~Ls~n~L~~l-p~~l--~~~L~~L~Ls~N~l~~-ip---~~l~~L~~L~Ls~N~l~~i-p~-l~~--~L~~L~L 127 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSL-PDNL--PPQITVLEITQNALIS-LP---ELPASLEYLDACDNRLSTL-PE-LPA--SLKHLDV 127 (571)
T ss_dssp TTCSEEECCSSCCSCC-CSCC--CTTCSEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCC-CC-CCT--TCCEEEC
T ss_pred CCccEEEeCCCCCCcc-CHhH--cCCCCEEECcCCCCcc-cc---cccCCCCEEEccCCCCCCc-ch-hhc--CCCEEEC
Confidence 4899999999998863 3333 3789999999999984 44 5679999999999988773 33 443 9999999
Q ss_pred CCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChH
Q 009672 334 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 413 (529)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~ 413 (529)
++|.++.... .+++|+.|++++|.++.... .+++|+.|++++|.++..+. +. ++|+.|++++|.++..
T Consensus 128 s~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~~l 195 (571)
T 3cvr_A 128 DNNQLTMLPE----LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLESL 195 (571)
T ss_dssp CSSCCSCCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCSSC
T ss_pred CCCcCCCCCC----cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCCch
Confidence 9999887432 67899999999999887433 56899999999999988533 54 8999999999999865
Q ss_pred HHHhhhcCCCC-------cEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhCCC
Q 009672 414 GAAYLRNFKNL-------RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 471 (529)
Q Consensus 414 ~~~~~~~~~~L-------~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~ 471 (529)
+. +.. +| +.|++++|.++.. +..+..+++|+.|++++| .++...|..+..++
T Consensus 196 p~--~~~--~L~~~~~~L~~L~Ls~N~l~~l-p~~l~~l~~L~~L~L~~N-~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 196 PA--VPV--RNHHSEETEIFFRCRENRITHI-PENILSLDPTCTIILEDN-PLSSRIRESLSQQT 254 (571)
T ss_dssp CC--CC----------CCEEEECCSSCCCCC-CGGGGGSCTTEEEECCSS-SCCHHHHHHHHHHH
T ss_pred hh--HHH--hhhcccccceEEecCCCcceec-CHHHhcCCCCCEEEeeCC-cCCCcCHHHHHHhh
Confidence 44 432 66 9999999999975 555666999999999999 79988888877643
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.55 E-value=5.4e-15 Score=131.51 Aligned_cols=149 Identities=21% Similarity=0.168 Sum_probs=86.6
Q ss_pred CCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCC
Q 009672 304 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 383 (529)
Q Consensus 304 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 383 (529)
-+.++.+++.+..+.. . -.++|+.|++++|.+....+..+..+++|+.|++++|.+.......+..+++|+.|++++
T Consensus 21 ~~~v~c~~~~l~~ip~-~--~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPA-G--IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCSSCCS-C--CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcCccCC-C--CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 3445555554443221 1 125666666666666655555556666666666666666555545555666666666666
Q ss_pred CCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCC
Q 009672 384 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 456 (529)
Q Consensus 384 ~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~ 456 (529)
|.++...+..+..+++|+.|++++|.++.. +..+..+++|++|++++|.++......+..+++|+.|++++|
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLTEL-PRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCSC-CTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CcCCccChhHhCcchhhCeEeccCCccccc-CcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence 666655444455666666666666666643 334456666666666666666554445556666666666666
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.55 E-value=1.2e-14 Score=140.01 Aligned_cols=219 Identities=10% Similarity=0.137 Sum_probs=107.0
Q ss_pred CccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEECC
Q 009672 231 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 310 (529)
Q Consensus 231 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 310 (529)
+|+.+.+.. .+......+|.+|++|+.+++.++.+.......|. +.+|+.+.+..+ +.......|..+++|+.+.+.
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~ 234 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIP 234 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECC
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecC
Confidence 455555553 33333333455555555555555544443333333 344555544422 222222334444444444444
Q ss_pred CCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCC---
Q 009672 311 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT--- 387 (529)
Q Consensus 311 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~--- 387 (529)
.+ +..+...+|. . .+|+.+.+. +.+......+|.+|++|+.+.+.++...
T Consensus 235 ~~-l~~I~~~aF~------------------------~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~ 287 (401)
T 4fdw_A 235 EN-VSTIGQEAFR------------------------E-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDP 287 (401)
T ss_dssp TT-CCEECTTTTT------------------------T-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCT
T ss_pred CC-ccCccccccc------------------------c-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCc
Confidence 32 2222333333 3 344444442 2333334444555555555555444332
Q ss_pred --HHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHH
Q 009672 388 --DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 465 (529)
Q Consensus 388 --~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 465 (529)
......|..|++|+.+.+.. .++..+..+|.+|.+|+.+.+.. .++..+..+|.++ +|+.+++.+| .+......
T Consensus 288 ~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~-~l~~I~~~aF~~~-~L~~l~l~~n-~~~~l~~~ 363 (401)
T 4fdw_A 288 EAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPA-NVTQINFSAFNNT-GIKEVKVEGT-TPPQVFEK 363 (401)
T ss_dssp TCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECT-TCCEECTTSSSSS-CCCEEEECCS-SCCBCCCS
T ss_pred ccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECc-cccEEcHHhCCCC-CCCEEEEcCC-CCcccccc
Confidence 22234455666666666653 35555555666666666666643 3555555566666 6666666666 44444344
Q ss_pred HHhCCC-CCCeeeccCCcc
Q 009672 466 LISGLT-GLVSLNVSNSRI 483 (529)
Q Consensus 466 ~l~~l~-~L~~L~l~~~~~ 483 (529)
.|.+++ .++.|.+..+.+
T Consensus 364 ~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 364 VWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp SCCCSCTTCCEEEECGGGH
T ss_pred cccCCCCCccEEEeCHHHH
Confidence 455553 566666665543
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=4.7e-14 Score=134.54 Aligned_cols=185 Identities=23% Similarity=0.348 Sum_probs=139.3
Q ss_pred CCCCCEEECCCCCCChhhhhhhcC-----CCCCCeEEcCCCccChhhhhhcc-CCCCCCeEeccCCCCChhhhhhhc---
Q 009672 301 LTNLESLNLDSCGIGDEGLVNLTG-----LCNLKCLELSDTQVGSSGLRHLS-GLTNLESINLSFTGISDGSLRKLA--- 371 (529)
Q Consensus 301 ~~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~--- 371 (529)
.+.|+.|++++|.++......+.. .++|+.|++++|.+++.....+. .+++|+.|++++|.+++.....++
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 468999999999888765554433 36999999999998876654443 457899999999999887666553
Q ss_pred --CCCCCcEEECCCCCCCHHHHHHH----hcCCCCCEEecCCCCCChHH----HHhhhcCCCCcEEEccCCCCChhhhhh
Q 009672 372 --GLSSLKSLNLDARQITDTGLAAL----TSLTGLTHLDLFGARITDSG----AAYLRNFKNLRSLEICGGGLTDAGVKH 441 (529)
Q Consensus 372 --~~~~L~~L~l~~~~~~~~~~~~l----~~~~~L~~L~l~~~~l~~~~----~~~~~~~~~L~~L~l~~~~l~~~~~~~ 441 (529)
..++|++|++++|.+++.+...+ ..+++|+.|++++|.+++.+ ...+..+++|++|++++|.+++.+...
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 46789999999999987554444 57889999999999998766 445577889999999999999876654
Q ss_pred c----cCCCCCCeEecCCCCCCChhHHHHHhCCC--C---CCeee--ccCCccChh
Q 009672 442 I----KDLSSLTLLNLSQNCNLTDKTLELISGLT--G---LVSLN--VSNSRITSA 486 (529)
Q Consensus 442 ~----~~~~~L~~L~l~~~~~l~~~~~~~l~~l~--~---L~~L~--l~~~~~~~~ 486 (529)
+ ...++|++|++++| .+++.....+..+. . |+.+. +.++.+...
T Consensus 231 l~~~L~~~~~L~~L~Ls~N-~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~~ 285 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFN-ELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEY 285 (372)
T ss_dssp HHHHHHHCSSCCEEECTTS-SCCHHHHHHHHHCC------CEEECCCC----CHHH
T ss_pred HHHHHHhCCCCCEEeccCC-CCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCHH
Confidence 4 45689999999999 78888777776532 2 77777 667766654
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.8e-15 Score=136.26 Aligned_cols=168 Identities=23% Similarity=0.332 Sum_probs=131.3
Q ss_pred CCccEEEccCCCCChHHHHhhcCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEec
Q 009672 278 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 357 (529)
Q Consensus 278 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 357 (529)
.++..++++.+.+.+.. .+..+++|+.|++++|.+.... .+..+++|+.|++++|.+....+ +..+++|+.|++
T Consensus 19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L 92 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence 34556667777665432 3567789999999998877543 57788999999999998877654 788899999999
Q ss_pred cCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChh
Q 009672 358 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 437 (529)
Q Consensus 358 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~ 437 (529)
++|.+..... +.. ++|+.|++++|.++.. ..++.+++|+.|++++|++++.. .+..+++|++|++++|.+++.
T Consensus 93 ~~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 93 NRNRLKNLNG--IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp CSSCCSCCTT--CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSCCCBC
T ss_pred CCCccCCcCc--ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCcCcch
Confidence 9998876432 333 7899999999988874 35778899999999999888863 577889999999999988876
Q ss_pred hhhhccCCCCCCeEecCCCCCCCh
Q 009672 438 GVKHIKDLSSLTLLNLSQNCNLTD 461 (529)
Q Consensus 438 ~~~~~~~~~~L~~L~l~~~~~l~~ 461 (529)
..+..+++|+.|++++| .+..
T Consensus 166 --~~l~~l~~L~~L~l~~N-~~~~ 186 (263)
T 1xeu_A 166 --GGLTRLKKVNWIDLTGQ-KCVN 186 (263)
T ss_dssp --TTSTTCCCCCEEEEEEE-EEEC
T ss_pred --HHhccCCCCCEEeCCCC-cccC
Confidence 56778889999999998 4443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=5.5e-16 Score=156.22 Aligned_cols=195 Identities=19% Similarity=0.172 Sum_probs=128.7
Q ss_pred CCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCC-------------CChhhhhhhcCCCCCcEEE-CCCCCCCHHH
Q 009672 325 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG-------------ISDGSLRKLAGLSSLKSLN-LDARQITDTG 390 (529)
Q Consensus 325 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------------~~~~~~~~l~~~~~L~~L~-l~~~~~~~~~ 390 (529)
++.|+.|++++|.+. ..+..++.+++|+.|+++++. .....+..++.+++|+.|+ ++.+.+....
T Consensus 348 ~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~ 426 (567)
T 1dce_A 348 DEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR 426 (567)
T ss_dssp TTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred CccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhh
Confidence 445555555555443 223444445555555543331 2233444555666677766 4444333221
Q ss_pred HH-----HHh--cCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhH
Q 009672 391 LA-----ALT--SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 463 (529)
Q Consensus 391 ~~-----~l~--~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 463 (529)
.. .+. ....|+.|++++|.++..+ . +..+++|+.|++++|.++.. |..+..+++|++|++++| .++..
T Consensus 427 ~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp-~-~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~Ls~N-~l~~l- 501 (567)
T 1dce_A 427 SKFLLENSVLKMEYADVRVLHLAHKDLTVLC-H-LEQLLLVTHLDLSHNRLRAL-PPALAALRCLEVLQASDN-ALENV- 501 (567)
T ss_dssp HHHHHHHHHHHHHHTTCSEEECTTSCCSSCC-C-GGGGTTCCEEECCSSCCCCC-CGGGGGCTTCCEEECCSS-CCCCC-
T ss_pred hhhhhcccccccCccCceEEEecCCCCCCCc-C-ccccccCcEeecCccccccc-chhhhcCCCCCEEECCCC-CCCCC-
Confidence 10 111 1236889999999888764 2 78889999999999988844 667888899999999998 77763
Q ss_pred HHHHhCCCCCCeeeccCCccChhH-HHhccCCCCCcEEeecCccCChhH--HHHhhcCCCCCceecC
Q 009672 464 LELISGLTGLVSLNVSNSRITSAG-LRHLKPLKNLRSLTLESCKVTAND--IKRLQSRDLPNLVSFR 527 (529)
Q Consensus 464 ~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~--~~~l~~~~~~~l~~l~ 527 (529)
| .+..+++|+.|++++|.+.+.. +..+..+++|+.|++++|+++... ...+. ..+|+|+.|+
T Consensus 502 p-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~-~~lp~L~~L~ 566 (567)
T 1dce_A 502 D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLA-EMLPSVSSIL 566 (567)
T ss_dssp G-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHH-HHCTTCSEEE
T ss_pred c-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHH-HHCcccCccC
Confidence 4 7888999999999999988876 778888999999999999887542 22222 3477888775
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.47 E-value=8.1e-14 Score=114.99 Aligned_cols=61 Identities=25% Similarity=0.389 Sum_probs=23.1
Q ss_pred cCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhh-hhhccCCCCCCeEecCCC
Q 009672 396 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG-VKHIKDLSSLTLLNLSQN 456 (529)
Q Consensus 396 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~~L~~L~l~~~ 456 (529)
.+++|+.|++++|.+++..+..+..+++|++|++++|.+++.. +..+..+++|++|++++|
T Consensus 62 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N 123 (149)
T 2je0_A 62 KLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123 (149)
T ss_dssp CCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTC
T ss_pred cCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCC
Confidence 3333444444444333322333333444444444444443321 123333444444444444
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.46 E-value=1.7e-13 Score=113.00 Aligned_cols=128 Identities=24% Similarity=0.292 Sum_probs=90.6
Q ss_pred CCCCeEEcCCCccC-hhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEe
Q 009672 326 CNLKCLELSDTQVG-SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 404 (529)
Q Consensus 326 ~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 404 (529)
++++.|++++|.+. ...+..+..+++|+.|++++|.+... ..++.+++|+.|++++|.+....+..+..+++|+.|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 55666666666665 23334456667777777777777664 5566777888888888888774466666788888888
Q ss_pred cCCCCCChHH-HHhhhcCCCCcEEEccCCCCChhhh---hhccCCCCCCeEecCC
Q 009672 405 LFGARITDSG-AAYLRNFKNLRSLEICGGGLTDAGV---KHIKDLSSLTLLNLSQ 455 (529)
Q Consensus 405 l~~~~l~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~---~~~~~~~~L~~L~l~~ 455 (529)
+++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 8888888753 3567888888888888888776644 4566677777777653
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.46 E-value=1.7e-14 Score=121.80 Aligned_cols=110 Identities=26% Similarity=0.277 Sum_probs=51.1
Q ss_pred cCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhH-HHHHhCCCCCC
Q 009672 396 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT-LELISGLTGLV 474 (529)
Q Consensus 396 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~l~~l~~L~ 474 (529)
.+++|+.|++++|.++.. ..+..+++|++|++++|.+....+..+..+++|++|++++| .++... +..+..+++|+
T Consensus 47 ~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~ 123 (168)
T 2ell_A 47 EFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGN-KLKDISTLEPLKKLECLK 123 (168)
T ss_dssp GGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSS-SCCSSGGGGGGSSCSCCC
T ss_pred hCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCC-ccCcchhHHHHhcCCCCC
Confidence 334444444444444433 23344444555555554444433333333445555555555 344321 13444455555
Q ss_pred eeeccCCccChhHH---HhccCCCCCcEEeecCccCC
Q 009672 475 SLNVSNSRITSAGL---RHLKPLKNLRSLTLESCKVT 508 (529)
Q Consensus 475 ~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~ 508 (529)
.|++++|++.+... ..+..+++|+.|++++|.+.
T Consensus 124 ~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 124 SLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp EEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred EEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 55555555544333 34455555555555555443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=6.3e-16 Score=155.76 Aligned_cols=208 Identities=18% Similarity=0.185 Sum_probs=135.0
Q ss_pred cCCCccEEEccCCCCChHHHHhhcCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeE
Q 009672 276 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 355 (529)
Q Consensus 276 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 355 (529)
..++|+.|++++|.+. ..|..+..+++|+.|+++++......+... .. +......+..++.+++|+.|
T Consensus 347 ~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll------~~-----~~~~~~~~~~l~~l~~L~~L 414 (567)
T 1dce_A 347 TDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLM------RA-----LDPLLYEKETLQYFSTLKAV 414 (567)
T ss_dssp TTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHH------HH-----HCTGGGHHHHHHHHHHHHHH
T ss_pred cCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHH------Hh-----cccccCCHHHHHHHHhcccC
Confidence 4556667777776664 456666667777777665442100000000 00 00122233344445555555
Q ss_pred e-ccCCCCChhh--------hhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcE
Q 009672 356 N-LSFTGISDGS--------LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 426 (529)
Q Consensus 356 ~-l~~~~~~~~~--------~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~ 426 (529)
+ ++.+.+.+.. ...+. ...|+.|++++|.++..+ . ++.+++|+.|++++|.++.. |..+.++++|+.
T Consensus 415 ~~l~~n~~~~L~~l~l~~n~i~~l~-~~~L~~L~Ls~n~l~~lp-~-~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~ 490 (567)
T 1dce_A 415 DPMRAAYLDDLRSKFLLENSVLKME-YADVRVLHLAHKDLTVLC-H-LEQLLLVTHLDLSHNRLRAL-PPALAALRCLEV 490 (567)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHHH-HTTCSEEECTTSCCSSCC-C-GGGGTTCCEEECCSSCCCCC-CGGGGGCTTCCE
T ss_pred cchhhcccchhhhhhhhcccccccC-ccCceEEEecCCCCCCCc-C-ccccccCcEeecCccccccc-chhhhcCCCCCE
Confidence 5 3332221111 11111 135888999998888753 3 78888999999999988854 557888999999
Q ss_pred EEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhH-HHHHhCCCCCCeeeccCCccChhHH---HhccCCCCCcEEee
Q 009672 427 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT-LELISGLTGLVSLNVSNSRITSAGL---RHLKPLKNLRSLTL 502 (529)
Q Consensus 427 L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l 502 (529)
|++++|.+++. + .+..+++|++|++++| .++... |..+..+++|+.|++++|++.+..+ ..+..+++|+.|++
T Consensus 491 L~Ls~N~l~~l-p-~l~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 491 LQASDNALENV-D-GVANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp EECCSSCCCCC-G-GGTTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred EECCCCCCCCC-c-ccCCCCCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 99999998875 3 7888899999999999 788776 7888899999999999999887543 22345788888864
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.44 E-value=6.4e-14 Score=118.21 Aligned_cols=132 Identities=20% Similarity=0.201 Sum_probs=72.5
Q ss_pred CCCeEeccCCCCC-hhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEc
Q 009672 351 NLESINLSFTGIS-DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 429 (529)
Q Consensus 351 ~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l 429 (529)
+|+.|++++|.+. ...+..+..+++|+.|++++|.+... ..+..+++|+.|++++|.++...+..+..+++|++|++
T Consensus 25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 3444444444443 11222233444555555555544443 33445555666666666555544444555666666666
Q ss_pred cCCCCChhhh-hhccCCCCCCeEecCCCCCCChhHH---HHHhCCCCCCeeeccCCccCh
Q 009672 430 CGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTL---ELISGLTGLVSLNVSNSRITS 485 (529)
Q Consensus 430 ~~~~l~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~---~~l~~l~~L~~L~l~~~~~~~ 485 (529)
++|.+++... ..+..+++|++|++++| .++...+ ..+..+++|+.|++++|....
T Consensus 103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 103 SGNKLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp BSSSCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred cCCccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 6666665422 45666677777777776 4554433 466677777777777776543
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=99.41 E-value=8.2e-13 Score=127.90 Aligned_cols=335 Identities=16% Similarity=0.137 Sum_probs=179.8
Q ss_pred cCchhhhhccCCC-CCCeEeccCCcccCchhhhhccCCCCCCEEEcCCCC--ccchhHHHHHhCCCCCCEEeccCccccc
Q 009672 69 VTDSGLIHLKDCS-NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN--AITAQGMKAFAGLINLVKLDLERCTRIH 145 (529)
Q Consensus 69 ~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 145 (529)
++.....+|.++. .|+.+.+.. .++.++..+|..|++|+.+.+..+. .++.....+|..|.+|+.+.+... ...
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~--svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~ 127 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPD--TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTE 127 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECT--TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSE
T ss_pred eeEcCHhhccCCCCcCEEEEECC--CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cce
Confidence 4445566677764 588888874 4777777888888888888776531 234445566777788887777653 233
Q ss_pred cccccccCCCcCcEEeccCCcccCccccccccCCCCCCeEEccCCCCChhHHHHhhccCccchhhhhhhhHHHhhhhhhh
Q 009672 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVF 225 (529)
Q Consensus 146 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (529)
....++..+.+|+.+.+.. .+.......+..+..|+.+.+..+ ++..+...|..
T Consensus 128 I~~~aF~~c~~L~~i~lp~--~~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~----------------------- 181 (394)
T 4gt6_A 128 IDSEAFHHCEELDTVTIPE--GVTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG----------------------- 181 (394)
T ss_dssp ECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-----------------------
T ss_pred ehhhhhhhhcccccccccc--eeeeecccceecccccccccccce-eeEeccccccc-----------------------
Confidence 3445667778888888763 344444566777778887777543 33333222221
Q ss_pred hcccCCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCC
Q 009672 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305 (529)
Q Consensus 226 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 305 (529)
.+|+.+.+..... .....+|..+..+..............-..+.......... ..+.....+.
T Consensus 182 ----~~l~~i~ip~~~~-~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~ 245 (394)
T 4gt6_A 182 ----TALTQIHIPAKVT-RIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYAL-----------IRYPSQREDP 245 (394)
T ss_dssp ----CCCSEEEECTTCC-EECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEE-----------EECCTTCCCS
T ss_pred ----cceeEEEECCccc-ccccchhhhccccceecccccccccccceeecccccccccc-----------cccccccccc
Confidence 4566666654321 12234556666666666554332211100000000000000 0011222333
Q ss_pred EEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCC
Q 009672 306 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 385 (529)
Q Consensus 306 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 385 (529)
.+.+... +..+...+|..+..|+.+.+..+. .......+..+++|+.+.+. +.+......+|.+|.+|+.+.+..+
T Consensus 246 ~~~ip~~-v~~i~~~aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~- 321 (394)
T 4gt6_A 246 AFKIPNG-VARIETHAFDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG- 321 (394)
T ss_dssp EEECCTT-EEEECTTTTTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-
T ss_pred eEEcCCc-ceEcccceeeecccccEEeccccc-ceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-
Confidence 3333322 222333455566666666665432 22333445566667766664 3444555566667777777777543
Q ss_pred CCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCC
Q 009672 386 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 456 (529)
Q Consensus 386 ~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~ 456 (529)
++..+...|..|.+|+.+.+..+ ++..+..+|.+|.+|+.+++.++... ..++..+.+|+.+.+..+
T Consensus 322 v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 322 ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPG 388 (394)
T ss_dssp CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC--------
T ss_pred ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCC
Confidence 44444456667777777777653 55566667777788888777765321 234555677777776654
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.40 E-value=7.5e-14 Score=120.39 Aligned_cols=129 Identities=16% Similarity=0.222 Sum_probs=94.1
Q ss_pred CeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHH-HHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccC
Q 009672 353 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA-ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 431 (529)
Q Consensus 353 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~ 431 (529)
+.++++++.+..... .+. .++++|++++|.+....+. .++.+++|+.|++++|+++...+..+.++++|++|++++
T Consensus 11 ~~l~~s~~~l~~ip~-~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPR-DIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCS-CCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCcc-CCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 678888887765432 222 3788888888887765432 366777888888888888777677777788888888888
Q ss_pred CCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccCh
Q 009672 432 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 485 (529)
Q Consensus 432 ~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~ 485 (529)
|.++...+..+.++++|++|++++| .++...+..+..+++|+.|++++|++..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCC-cCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 8887776666777778888888887 6777666677777778888887777663
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.38 E-value=1.8e-13 Score=116.27 Aligned_cols=107 Identities=18% Similarity=0.231 Sum_probs=48.1
Q ss_pred CCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHH-HHHhCCCCCCeee
Q 009672 399 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL-ELISGLTGLVSLN 477 (529)
Q Consensus 399 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~l~~l~~L~~L~ 477 (529)
+|+.|++++|.+++. ..+..+++|++|++++|.++...+..+..+++|++|++++| .++.... ..+..+++|+.|+
T Consensus 43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~ 119 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNN-SLVELGDLDPLASLKSLTYLC 119 (176)
T ss_dssp CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEE
T ss_pred CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEE
Confidence 444444444444433 23344444555555555444432222344445555555555 3433221 1344455555555
Q ss_pred ccCCccChhHHH---hccCCCCCcEEeecCccCC
Q 009672 478 VSNSRITSAGLR---HLKPLKNLRSLTLESCKVT 508 (529)
Q Consensus 478 l~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~ 508 (529)
+++|++...... .+..+++|+.|++++|...
T Consensus 120 l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 120 ILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred ecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 555554432221 2445555555555555443
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.37 E-value=4.9e-13 Score=113.79 Aligned_cols=130 Identities=19% Similarity=0.183 Sum_probs=72.5
Q ss_pred CCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccC
Q 009672 352 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 431 (529)
Q Consensus 352 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~ 431 (529)
.+.++++++.+...... ..++|+.|++++|.+....+..++.+++|+.|++++|.++...+..+..+++|++|++++
T Consensus 9 ~~~l~~~~~~l~~~p~~---~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTG---IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSSCCTT---CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCccCCCC---CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 45566666655543221 124566666666666554444455556666666666666655544455566666666666
Q ss_pred CCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccCh
Q 009672 432 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 485 (529)
Q Consensus 432 ~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~ 485 (529)
|.++...+..+..+++|++|++++| .++...+..+..+++|+.|++++|++..
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCCeec
Confidence 6665554444555566666666665 5554444444555556666666655543
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.6e-13 Score=116.91 Aligned_cols=127 Identities=22% Similarity=0.243 Sum_probs=87.2
Q ss_pred CeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCC
Q 009672 353 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 432 (529)
Q Consensus 353 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~ 432 (529)
+.++++++.+..... .+ .++|++|++++|.++..+ ..+..+++|+.|++++|.++...+..|.++++|++|++++|
T Consensus 13 ~~l~~~~~~l~~ip~-~~--~~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPK-GI--PRDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSSCCS-CC--CTTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCcCCC-CC--CCCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 567777777665432 22 256777888777776542 56667777777777777777766666777777777777777
Q ss_pred CCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccC
Q 009672 433 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484 (529)
Q Consensus 433 ~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 484 (529)
.++...+..+.++++|++|++++| .++...+..+..+++|+.|++++|++.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCCCee
Confidence 777766666777777777777777 666655555666777777777777654
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.9e-12 Score=125.34 Aligned_cols=134 Identities=17% Similarity=0.221 Sum_probs=84.5
Q ss_pred hhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccC
Q 009672 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 444 (529)
Q Consensus 365 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~ 444 (529)
....+|.+|..|+.+.+..+.. ..+...|.+|++|+.+.+.. .++..+..+|.+|.+|+.+.+.. .++.++..+|.+
T Consensus 256 i~~~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~ 332 (394)
T 4gt6_A 256 IETHAFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPE-GITQILDDAFAG 332 (394)
T ss_dssp ECTTTTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTT
T ss_pred cccceeeecccccEEecccccc-eecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCC-cccEehHhHhhC
Confidence 3345666777777777754322 22344566777788777753 45556666777888888888864 366666677778
Q ss_pred CCCCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccChhHHHhccCCCCCcEEeecCcc
Q 009672 445 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 506 (529)
Q Consensus 445 ~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 506 (529)
|.+|+.+.|.++ ++.+...+|.+|++|+.+.+.++... ..++..+.+|+.+.+..+.
T Consensus 333 C~~L~~i~ip~s--v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 333 CEQLERIAIPSS--VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp CTTCCEEEECTT--CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC---------
T ss_pred CCCCCEEEECcc--cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCC
Confidence 888888888664 66666667788888888888776432 2456677788888776653
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.36 E-value=2.9e-13 Score=116.69 Aligned_cols=128 Identities=17% Similarity=0.203 Sum_probs=105.1
Q ss_pred CeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhh-hhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCC
Q 009672 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR-KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 407 (529)
Q Consensus 329 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 407 (529)
+.++++++.++.... .+ ..+++.|++++|.+...... .+..+++|++|++++|.++...+..+..+++|+.|++++
T Consensus 11 ~~l~~s~~~l~~ip~-~~--~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPR-DI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCS-CC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCcc-CC--CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 678888887765432 12 23889999999988876553 477889999999999999887677788889999999999
Q ss_pred CCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCC
Q 009672 408 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 460 (529)
Q Consensus 408 ~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~ 460 (529)
|+++...+..+.++++|++|++++|.++...+..+..+++|++|++++| .+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~ 139 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN-PFN 139 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC-CBC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC-Ccc
Confidence 9999887777888999999999999998887888888899999999999 444
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.34 E-value=9.1e-13 Score=111.92 Aligned_cols=108 Identities=19% Similarity=0.297 Sum_probs=60.1
Q ss_pred CCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhh-hhccCCCCCCeEec
Q 009672 375 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNL 453 (529)
Q Consensus 375 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~L~~L~l 453 (529)
+|+.|++++|.+... ..++.+++|+.|++++|.++..++..+..+++|++|++++|.++.... ..+..+++|++|++
T Consensus 43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l 120 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCI 120 (176)
T ss_dssp CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEEC
T ss_pred CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEe
Confidence 455555555555442 234455555566666555555443344556666666666666654332 24555666666666
Q ss_pred CCCCCCChhHHH---HHhCCCCCCeeeccCCccCh
Q 009672 454 SQNCNLTDKTLE---LISGLTGLVSLNVSNSRITS 485 (529)
Q Consensus 454 ~~~~~l~~~~~~---~l~~l~~L~~L~l~~~~~~~ 485 (529)
++| .++..... .+..+++|+.|++++|....
T Consensus 121 ~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 121 LRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CSS-GGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred cCC-CCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 666 34432221 46667777777777776544
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.1e-12 Score=112.89 Aligned_cols=125 Identities=18% Similarity=0.189 Sum_probs=91.1
Q ss_pred CeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCC
Q 009672 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 408 (529)
Q Consensus 329 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 408 (529)
+.++.+++.++..... -.++++.|++++|.+.... ..+..+++|+.|++++|.++...+..|..+++|+.|++++|
T Consensus 13 ~~l~~~~~~l~~ip~~---~~~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKG---IPRDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSSCCSC---CCTTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCcCCCC---CCCCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 5667777666544321 1257788888888777543 56777788888888888887766666777788888888888
Q ss_pred CCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCC
Q 009672 409 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 457 (529)
Q Consensus 409 ~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~ 457 (529)
.++...+..|..+++|+.|++++|.++......+..+++|+.|++++|+
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 8887777777778888888888888877666667777888888888873
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.3e-12 Score=111.24 Aligned_cols=125 Identities=18% Similarity=0.155 Sum_probs=66.4
Q ss_pred CeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCC
Q 009672 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 408 (529)
Q Consensus 329 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 408 (529)
+.++.+++.++..... -.++++.|++++|.+.......+..+++|++|++++|.++...+..++.+++|+.|++++|
T Consensus 10 ~~l~~~~~~l~~~p~~---~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTG---IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCSSCCTT---CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCccCCCC---CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 4455555544433211 1245556666655555444444555555666666665555543334455556666666666
Q ss_pred CCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCC
Q 009672 409 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 456 (529)
Q Consensus 409 ~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~ 456 (529)
.++...+..+..+++|++|++++|.++......+..+++|++|++++|
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCC
Confidence 555554444555556666666666555544444455555666666665
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.30 E-value=2.6e-14 Score=124.10 Aligned_cols=133 Identities=23% Similarity=0.246 Sum_probs=94.7
Q ss_pred hhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCC
Q 009672 369 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 448 (529)
Q Consensus 369 ~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L 448 (529)
.+..+++|++|++++|.+...+ .+..+++|+.|++++|.++.. +..+..+++|++|++++|.+++.. .+..+++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l-~~~~~~~~~L~~L~L~~N~l~~l~--~~~~l~~L 117 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKI-ENLDAVADTLEELWISYNQIASLS--GIEKLVNL 117 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSC-SSHHHHHHHCSEEEEEEEECCCHH--HHHHHHHS
T ss_pred HHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcccc-cchhhcCCcCCEEECcCCcCCcCC--ccccCCCC
Confidence 5666777777777777776642 566777888888888877754 334455678888888888887642 46677888
Q ss_pred CeEecCCCCCCChhHH-HHHhCCCCCCeeeccCCccChhHHH----------hccCCCCCcEEeecCccCCh
Q 009672 449 TLLNLSQNCNLTDKTL-ELISGLTGLVSLNVSNSRITSAGLR----------HLKPLKNLRSLTLESCKVTA 509 (529)
Q Consensus 449 ~~L~l~~~~~l~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~----------~~~~~~~L~~L~l~~~~~~~ 509 (529)
++|++++| .++.... ..+..+++|+.|++++|++.+..+. .+..+++|+.|+ ++.++.
T Consensus 118 ~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 118 RVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp SEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred CEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 88888888 6666443 5677888888888888887665332 367788888887 665554
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.24 E-value=8.5e-14 Score=120.87 Aligned_cols=132 Identities=24% Similarity=0.264 Sum_probs=73.4
Q ss_pred ccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCc
Q 009672 346 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 425 (529)
Q Consensus 346 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~ 425 (529)
+..+++|+.|++++|.+.... .+..+++|+.|++++|.+... +..+..+++|+.|++++|++++.. .+..+++|+
T Consensus 44 ~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l-~~~~~~~~~L~~L~L~~N~l~~l~--~~~~l~~L~ 118 (198)
T 1ds9_A 44 LSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKI-ENLDAVADTLEELWISYNQIASLS--GIEKLVNLR 118 (198)
T ss_dssp HHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSC-SSHHHHHHHCSEEEEEEEECCCHH--HHHHHHHSS
T ss_pred HhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcccc-cchhhcCCcCCEEECcCCcCCcCC--ccccCCCCC
Confidence 344455555555555444321 344455555555555555432 223334456666666666666542 355566666
Q ss_pred EEEccCCCCChhhh-hhccCCCCCCeEecCCCCCCChhHH----------HHHhCCCCCCeeeccCCccCh
Q 009672 426 SLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTL----------ELISGLTGLVSLNVSNSRITS 485 (529)
Q Consensus 426 ~L~l~~~~l~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~----------~~l~~l~~L~~L~l~~~~~~~ 485 (529)
+|++++|.++.... ..+..+++|++|++++| .+....+ ..+..+++|+.|+ +++++.
T Consensus 119 ~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGN-PLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp EEEESEEECCCHHHHHHHTTTTTCSEEEECSC-HHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred EEECCCCcCCchhHHHHHhcCCCCCEEEecCC-ccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 66666666665433 34556666777777766 4433322 3467788888886 565543
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.22 E-value=1e-12 Score=136.77 Aligned_cols=191 Identities=13% Similarity=0.024 Sum_probs=85.7
Q ss_pred CCCCeEecCCCcCChhhhHhhhcCCCccEEEc-----cCCCCChHHHHhhcCCCCCCEEECCCCCCChhhhhhhcCCCCC
Q 009672 254 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL-----GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328 (529)
Q Consensus 254 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l-----~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 328 (529)
+.++.+++.++.+.... ..+.....|..+.+ ..+.+. ..+..+..++.|+.|++++|.+..+ +..+..+++|
T Consensus 173 ~~~~~l~L~~n~~~~~~-~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~~l-~~~~~~l~~L 249 (727)
T 4b8c_D 173 PLTPKIELFANGKDEAN-QALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIFNI-SANIFKYDFL 249 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCSCC-CGGGGGCCSC
T ss_pred CccceEEeeCCCCCcch-hhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCCCC-ChhhcCCCCC
Confidence 45667777666655422 11112222222222 222222 2344466677777777777766543 3334467777
Q ss_pred CeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCC
Q 009672 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 408 (529)
Q Consensus 329 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 408 (529)
+.|++++|.++ ..+..++.+++|+.|++++|.+.. .+..+..+++|++|++++|.+... +..++.+++|+.|++++|
T Consensus 250 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~L~~N~l~~l-p~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 250 TRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFDNMVTTL-PWEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp SCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSS-CCSSGGGGTTCSEEECCSSCCCCC-CSSTTSCTTCCCEECTTS
T ss_pred CEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCc-cChhhcCCCCCCEEECCCCCCCcc-ChhhhcCCCccEEeCCCC
Confidence 77777777766 334556667777777777777764 355566677777777777777654 334666777777777777
Q ss_pred CCChHHHHhhhcCC-CCcEEEccCCCCChhhhhhccCCCCCCeEecCCC
Q 009672 409 RITDSGAAYLRNFK-NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 456 (529)
Q Consensus 409 ~l~~~~~~~~~~~~-~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~ 456 (529)
.+++..+..+.... .+..+++++|.++...+ ..|+.|+++.|
T Consensus 327 ~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p------~~l~~l~l~~n 369 (727)
T 4b8c_D 327 PLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP------HERRFIEINTD 369 (727)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC------CC---------
T ss_pred ccCCCChHHHhhcchhhhHHhhccCcccCcCc------cccceeEeecc
Confidence 77766655553322 11235566666654322 24555555554
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=99.20 E-value=9e-11 Score=113.06 Aligned_cols=121 Identities=17% Similarity=0.206 Sum_probs=60.7
Q ss_pred ccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCc
Q 009672 346 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 425 (529)
Q Consensus 346 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~ 425 (529)
+..+..|+.+.+..+ +......++.++.+|+.+.+..+ +...+...|..|++|+.+.+.++.++..+..+|.+|.+|+
T Consensus 236 f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~ 313 (379)
T 4h09_A 236 FYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLS 313 (379)
T ss_dssp TTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCC
T ss_pred ccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCC
Confidence 334444444444332 33333344445555555555322 2222233445555566655555555555555566666666
Q ss_pred EEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhCCC
Q 009672 426 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 471 (529)
Q Consensus 426 ~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~ 471 (529)
.+.+.. .++.++..+|.+|.+|+.+.+..+ ++.+...+|.+++
T Consensus 314 ~i~lp~-~l~~I~~~aF~~C~~L~~i~ip~~--v~~I~~~aF~~c~ 356 (379)
T 4h09_A 314 SVTLPT-ALKTIQVYAFKNCKALSTISYPKS--ITLIESGAFEGSS 356 (379)
T ss_dssp EEECCT-TCCEECTTTTTTCTTCCCCCCCTT--CCEECTTTTTTSS
T ss_pred EEEcCc-cccEEHHHHhhCCCCCCEEEECCc--cCEEchhHhhCCC
Confidence 666643 245555556666666666666543 4444444555543
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.6e-12 Score=133.71 Aligned_cols=149 Identities=16% Similarity=0.110 Sum_probs=83.1
Q ss_pred hcccCCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCC
Q 009672 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305 (529)
Q Consensus 226 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 305 (529)
+..++.|+.|++++|.+.. .+..+..+++|+.|+|++|.+. ..+..+..+++|++|++++|.+. ..|..+..+++|+
T Consensus 220 ~~~l~~L~~L~Ls~n~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~ 296 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIFN-ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLK 296 (727)
T ss_dssp --CCCCCCEEECTTSCCSC-CCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCS
T ss_pred hccCCCCcEEECCCCCCCC-CChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCC
Confidence 4455677777777776664 2334446677777777777766 34455666777777777777766 3455566677777
Q ss_pred EEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCC-CCCeEeccCCCCChhhhhhhcCCCCCcEEECCCC
Q 009672 306 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT-NLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 384 (529)
Q Consensus 306 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 384 (529)
.|++++|.+.. .+..++.+++|+.|++++|.+....+..+.... ....+++.+|.+....+ ..|+.|++..+
T Consensus 297 ~L~L~~N~l~~-lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p------~~l~~l~l~~n 369 (727)
T 4b8c_D 297 YFYFFDNMVTT-LPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP------HERRFIEINTD 369 (727)
T ss_dssp EEECCSSCCCC-CCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC------CC---------
T ss_pred EEECCCCCCCc-cChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc------cccceeEeecc
Confidence 77777776654 344466677777777777776655554443321 11224455555543222 34555555544
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=99.19 E-value=5.3e-11 Score=98.28 Aligned_cols=102 Identities=20% Similarity=0.406 Sum_probs=86.0
Q ss_pred CCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhCC----CCCCeeeccCCc-cChhHHHhccCCCC
Q 009672 422 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL----TGLVSLNVSNSR-ITSAGLRHLKPLKN 496 (529)
Q Consensus 422 ~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l----~~L~~L~l~~~~-~~~~~~~~~~~~~~ 496 (529)
..|++|+++++.+++.+...+.++++|++|++++|..+++.....++.+ ++|+.|+|++|. +++.+...+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 4688999999999888888888899999999999988999888888874 479999999985 89888888888999
Q ss_pred CcEEeecCcc-CChhH--HHHhhcCCCCCce
Q 009672 497 LRSLTLESCK-VTAND--IKRLQSRDLPNLV 524 (529)
Q Consensus 497 L~~L~l~~~~-~~~~~--~~~l~~~~~~~l~ 524 (529)
|++|++++|. ++..+ +..++ +.+|+++
T Consensus 141 L~~L~L~~c~~Itd~gl~~~~L~-~~lP~l~ 170 (176)
T 3e4g_A 141 LKYLFLSDLPGVKEKEKIVQAFK-TSLPSLE 170 (176)
T ss_dssp CCEEEEESCTTCCCHHHHHHHHH-HHCTTCE
T ss_pred CCEEECCCCCCCCchHHHHHHHH-HHCCCcE
Confidence 9999999994 77654 56666 6788876
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=99.17 E-value=1e-10 Score=112.60 Aligned_cols=144 Identities=17% Similarity=0.158 Sum_probs=75.6
Q ss_pred hcCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCc
Q 009672 298 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 377 (529)
Q Consensus 298 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 377 (529)
+..+.+++.+.+... +..+....+..+..|+.+.+..+ ++......+..+.+|+.+.+.. .+.......|.+|.+|+
T Consensus 213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~ 289 (379)
T 4h09_A 213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLT 289 (379)
T ss_dssp TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCC
T ss_pred cccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceeccccccccccccc
Confidence 334445555554332 22233334445555555555433 3333334445555555555543 23333444555666666
Q ss_pred EEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCC
Q 009672 378 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 446 (529)
Q Consensus 378 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~ 446 (529)
.+.+..+.+...+...|.+|.+|+.+.+.. .++..+..+|.+|.+|+++.+..+ ++.++..+|.++.
T Consensus 290 ~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~-~l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 290 KVVMDNSAIETLEPRVFMDCVKLSSVTLPT-ALKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp EEEECCTTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred cccccccccceehhhhhcCCCCCCEEEcCc-cccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 666665555544445566666666666654 255555556677777777776543 5555555665553
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.16 E-value=1.8e-11 Score=102.98 Aligned_cols=105 Identities=18% Similarity=0.226 Sum_probs=55.0
Q ss_pred CcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCC
Q 009672 376 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 455 (529)
Q Consensus 376 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~ 455 (529)
.+.++++++.++..+ ..+ .++|+.|++++|.++...+..+.++++|++|++++|.++...+..+..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~~ip-~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLASVP-TGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSSCC-SCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccC-ccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 455666665555432 111 24555555555555555455555555555555555555554444445555555555555
Q ss_pred CCCCChhHHHHHhCCCCCCeeeccCCccC
Q 009672 456 NCNLTDKTLELISGLTGLVSLNVSNSRIT 484 (529)
Q Consensus 456 ~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 484 (529)
| .++...+..+..+++|+.|++++|++.
T Consensus 88 N-~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 88 N-QLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp S-CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred C-ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 5 455444444555555555555555543
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.10 E-value=4.5e-11 Score=100.88 Aligned_cols=104 Identities=21% Similarity=0.222 Sum_probs=65.8
Q ss_pred cEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCC
Q 009672 377 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 456 (529)
Q Consensus 377 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~ 456 (529)
+.++++++.+...+ ..+ .++|+.|++++|+++...+..+.++++|++|++++|.++...+..+..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~~iP-~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVP-AGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCC-SCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccC-CCc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 56677776665542 112 256777777777776666666666777777777777766655545566666777777766
Q ss_pred CCCChhHHHHHhCCCCCCeeeccCCccC
Q 009672 457 CNLTDKTLELISGLTGLVSLNVSNSRIT 484 (529)
Q Consensus 457 ~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 484 (529)
.++...+..+..+++|+.|++++|++.
T Consensus 92 -~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 -HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp -CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred -ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 566554445666666666666666654
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.05 E-value=2.2e-09 Score=101.29 Aligned_cols=156 Identities=20% Similarity=0.229 Sum_probs=92.8
Q ss_pred hccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHh--cCCCCCEEecCCC--CC-ChH----HH
Q 009672 345 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT--SLTGLTHLDLFGA--RI-TDS----GA 415 (529)
Q Consensus 345 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~--~~~~L~~L~l~~~--~l-~~~----~~ 415 (529)
.+..+|+|+.|.+.++.-... ..+ ..++|+.|++..+.+.......+. .+|+|+.|+++.+ .. .+. ..
T Consensus 167 ll~~~P~L~~L~L~g~~~l~l--~~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~ 243 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNLSI--GKK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243 (362)
T ss_dssp HHHTCTTCCEEEEECCBTCBC--CSC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred HHhcCCCCcEEEEeCCCCcee--ccc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence 345566777777766521111 112 256777777777777766555554 5777777776421 11 110 01
Q ss_pred Hhh--hcCCCCcEEEccCCCCChhhhhhcc---CCCCCCeEecCCCCCCChhHHHHH----hCCCCCCeeeccCCccChh
Q 009672 416 AYL--RNFKNLRSLEICGGGLTDAGVKHIK---DLSSLTLLNLSQNCNLTDKTLELI----SGLTGLVSLNVSNSRITSA 486 (529)
Q Consensus 416 ~~~--~~~~~L~~L~l~~~~l~~~~~~~~~---~~~~L~~L~l~~~~~l~~~~~~~l----~~l~~L~~L~l~~~~~~~~ 486 (529)
..+ ..+++|+.|++.+|.+.+.+...+. .+++|++|+|+.| .+.+.....+ ..+++|+.|++++|.+++.
T Consensus 244 ~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~ 322 (362)
T 2ra8_A 244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE 322 (362)
T ss_dssp GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHH
T ss_pred HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCCcCCHH
Confidence 112 2467888888887777665444332 3577888888777 6777544333 3467788888888887776
Q ss_pred HHHhccC-CCCCcEEeecCcc
Q 009672 487 GLRHLKP-LKNLRSLTLESCK 506 (529)
Q Consensus 487 ~~~~~~~-~~~L~~L~l~~~~ 506 (529)
....+.. + ...+++++++
T Consensus 323 ~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 323 MKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHHHC--CSEEECCSBC
T ss_pred HHHHHHHHc--CCEEEecCCc
Confidence 6655543 2 3557777776
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.04 E-value=7.7e-11 Score=99.10 Aligned_cols=103 Identities=23% Similarity=0.222 Sum_probs=78.0
Q ss_pred CCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEcc
Q 009672 351 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 430 (529)
Q Consensus 351 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~ 430 (529)
..+.++++++.+..... .+ .++|+.|++++|.+....+..+..+++|+.|++++|+++...+..|.++++|++|+++
T Consensus 10 ~~~~l~~s~n~l~~ip~-~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPT-GI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCSSCCS-CC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcCccCc-cC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 35677888877766432 22 2678888888888877666667778888888888888887777677788888888888
Q ss_pred CCCCChhhhhhccCCCCCCeEecCCC
Q 009672 431 GGGLTDAGVKHIKDLSSLTLLNLSQN 456 (529)
Q Consensus 431 ~~~l~~~~~~~~~~~~~L~~L~l~~~ 456 (529)
+|.++...+..+..+++|++|++++|
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCC
Confidence 88887776666777888888888888
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=99.02 E-value=3.5e-10 Score=93.34 Aligned_cols=88 Identities=22% Similarity=0.338 Sum_probs=54.0
Q ss_pred ceeEEEecCcccCchhhhhccCCCCCCeEeccCCcccCchhhhhccCC----CCCCEEEcCCCCccchhHHHHHhCCCCC
Q 009672 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGL----SNLTSLSFRRNNAITAQGMKAFAGLINL 133 (529)
Q Consensus 58 ~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l----~~L~~L~l~~~~~~~~~~~~~~~~~~~L 133 (529)
.|++||++++.+++.....++.+++|+.|+|++|..+++.+...+..+ ++|++|+|++|..+++.....+.++++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 466666666666666666666666666666666666666666666553 3566666666655566655556666666
Q ss_pred CEEeccCccccc
Q 009672 134 VKLDLERCTRIH 145 (529)
Q Consensus 134 ~~L~l~~~~~~~ 145 (529)
++|++++|+.++
T Consensus 142 ~~L~L~~c~~It 153 (176)
T 3e4g_A 142 KYLFLSDLPGVK 153 (176)
T ss_dssp CEEEEESCTTCC
T ss_pred CEEECCCCCCCC
Confidence 666666654433
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.3e-10 Score=97.99 Aligned_cols=103 Identities=18% Similarity=0.197 Sum_probs=82.6
Q ss_pred CCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccC
Q 009672 352 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 431 (529)
Q Consensus 352 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~ 431 (529)
-+.++++++.+..... .+ .++|+.|++++|.+....+..+..+++|+.|++++|+++...+..+.++++|++|++++
T Consensus 14 ~~~l~~~~n~l~~iP~-~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPA-GI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCSSCCS-CC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCCccCC-Cc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 4678888887766433 23 27889999999988887667788888999999999988887776778888999999999
Q ss_pred CCCChhhhhhccCCCCCCeEecCCCC
Q 009672 432 GGLTDAGVKHIKDLSSLTLLNLSQNC 457 (529)
Q Consensus 432 ~~l~~~~~~~~~~~~~L~~L~l~~~~ 457 (529)
|.++...+..+..+++|++|++++|+
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred CccceeCHHHhccccCCCEEEeCCCC
Confidence 98887766668888899999999983
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.5e-09 Score=102.42 Aligned_cols=145 Identities=18% Similarity=0.253 Sum_probs=107.6
Q ss_pred hhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhh--cCCCCcEEEccC--CC-CChhhh---
Q 009672 368 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR--NFKNLRSLEICG--GG-LTDAGV--- 439 (529)
Q Consensus 368 ~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~--~~~~L~~L~l~~--~~-l~~~~~--- 439 (529)
..+..+++|+.|.+.++.-... ..+ .+++|+.|++..|.+.......+. .+|+|+.|+|.. +. ..+...
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l~l--~~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l 242 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNLSI--GKK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF 242 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTCBC--CSC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred HHHhcCCCCcEEEEeCCCCcee--ccc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHH
Confidence 4456789999999988731111 112 478999999999999887766664 799999999853 11 111111
Q ss_pred -hhc--cCCCCCCeEecCCCCCCChhHHHHHh---CCCCCCeeeccCCccChhHHHhc----cCCCCCcEEeecCccCCh
Q 009672 440 -KHI--KDLSSLTLLNLSQNCNLTDKTLELIS---GLTGLVSLNVSNSRITSAGLRHL----KPLKNLRSLTLESCKVTA 509 (529)
Q Consensus 440 -~~~--~~~~~L~~L~l~~~~~l~~~~~~~l~---~l~~L~~L~l~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~ 509 (529)
..+ ..+|+|++|++.+| .+.+.....+. .+++|+.|+|+.|.+.+.+..++ ..+++|++|++++|.++.
T Consensus 243 ~~~l~~~~~p~Lr~L~L~~~-~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 243 RPLFSKDRFPNLKWLGIVDA-EEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp GGGSCTTTCTTCCEEEEESC-TTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred HHHHhcCCCCCcCEEeCCCC-CCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 122 24799999999999 67765555554 47899999999999998765444 456999999999999999
Q ss_pred hHHHHhh
Q 009672 510 NDIKRLQ 516 (529)
Q Consensus 510 ~~~~~l~ 516 (529)
..++.+.
T Consensus 322 ~~~~~l~ 328 (362)
T 2ra8_A 322 EMKKELQ 328 (362)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998888
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.98 E-value=3.6e-09 Score=90.06 Aligned_cols=121 Identities=18% Similarity=0.209 Sum_probs=56.5
Q ss_pred hhcCCCCCcEEECCCC-CCCHHHHHHH----hcCCCCCEEecCCCCCChHHHHh----hhcCCCCcEEEccCCCCChhhh
Q 009672 369 KLAGLSSLKSLNLDAR-QITDTGLAAL----TSLTGLTHLDLFGARITDSGAAY----LRNFKNLRSLEICGGGLTDAGV 439 (529)
Q Consensus 369 ~l~~~~~L~~L~l~~~-~~~~~~~~~l----~~~~~L~~L~l~~~~l~~~~~~~----~~~~~~L~~L~l~~~~l~~~~~ 439 (529)
.+...++|++|++++| .+...+...+ ...++|++|++++|.+.+.+... +...++|++|++++|.+++.+.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3344555555555555 5554333222 23344555555555554433222 2333444444444444444432
Q ss_pred hhccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeeec--cCCccChhHH----HhccCCCCCcEEeecCccCChh
Q 009672 440 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV--SNSRITSAGL----RHLKPLKNLRSLTLESCKVTAN 510 (529)
Q Consensus 440 ~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l--~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~ 510 (529)
..+ ...+...+.|+.|++ ++|.+...+. ..+...++|++|++++|.++..
T Consensus 111 ~~l---------------------~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~ 166 (185)
T 1io0_A 111 LAL---------------------VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPR 166 (185)
T ss_dssp HHH---------------------HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHH
T ss_pred HHH---------------------HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChH
Confidence 221 122333455555555 5555554433 2334445666666666665544
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.89 E-value=2.2e-08 Score=85.10 Aligned_cols=116 Identities=21% Similarity=0.165 Sum_probs=86.2
Q ss_pred hhhhhccCCCCCCeEeccCC-CCChhhhhh----hcCCCCCcEEECCCCCCCHHHHHHH----hcCCCCCEEecCCCCCC
Q 009672 341 SGLRHLSGLTNLESINLSFT-GISDGSLRK----LAGLSSLKSLNLDARQITDTGLAAL----TSLTGLTHLDLFGARIT 411 (529)
Q Consensus 341 ~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~----l~~~~~L~~L~l~~~~~~~~~~~~l----~~~~~L~~L~l~~~~l~ 411 (529)
.....+...+.|+.|++++| .+.+..... +...++|++|++++|.+.+.+...+ ...++|++|++++|.++
T Consensus 27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 33456678899999999999 998865543 4567899999999999998765444 46689999999999999
Q ss_pred hHHHH----hhhcCCCCcEEEc--cCCCCChhhhhhc----cCCCCCCeEecCCC
Q 009672 412 DSGAA----YLRNFKNLRSLEI--CGGGLTDAGVKHI----KDLSSLTLLNLSQN 456 (529)
Q Consensus 412 ~~~~~----~~~~~~~L~~L~l--~~~~l~~~~~~~~----~~~~~L~~L~l~~~ 456 (529)
+.+.. .+...++|++|++ ++|.+++.+...+ ...++|++|++++|
T Consensus 107 ~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 107 GSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 87644 4466678888888 7788877665433 23355666666555
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=98.84 E-value=2.5e-09 Score=101.51 Aligned_cols=102 Identities=25% Similarity=0.277 Sum_probs=51.0
Q ss_pred EECCCC-CCCHHHHHHHhcCCCCCEEecCC-CCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCC
Q 009672 379 LNLDAR-QITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 456 (529)
Q Consensus 379 L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~-~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~ 456 (529)
++++++ .++.. |. +..+++|+.|++++ |.++...+..|.++++|+.|+|++|.++...+..|.++++|++|+|++|
T Consensus 13 v~~~~~n~l~~i-p~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALDSL-HH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCTTT-TT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCCcc-CC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 444444 45443 22 44555555555553 5555554445555555555555555555554445555555555555555
Q ss_pred CCCChhHHHHHhCCCCCCeeeccCCccC
Q 009672 457 CNLTDKTLELISGLTGLVSLNVSNSRIT 484 (529)
Q Consensus 457 ~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 484 (529)
.++...+..+..++ |+.|++.+|++.
T Consensus 91 -~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 -ALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp -CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred -ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 44443333333333 555555555443
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=98.69 E-value=9.1e-09 Score=97.66 Aligned_cols=104 Identities=20% Similarity=0.248 Sum_probs=86.8
Q ss_pred CeEeccCC-CCChhhhhhhcCCCCCcEEECCC-CCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEcc
Q 009672 353 ESINLSFT-GISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 430 (529)
Q Consensus 353 ~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~ 430 (529)
..++.+++ .+..+. . +..+++|+.|++++ |.+....+..|+.+++|+.|+|++|+++...+..|.++++|+.|+|+
T Consensus 11 ~~v~~~~~n~l~~ip-~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALDSLH-H-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCTTTT-T-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCCccC-C-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 35677777 777643 4 88888999999996 99988777778899999999999999999888888999999999999
Q ss_pred CCCCChhhhhhccCCCCCCeEecCCCCCCC
Q 009672 431 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 460 (529)
Q Consensus 431 ~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~ 460 (529)
+|.++...+..+..++ |+.|++.+| .+.
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N-~~~ 116 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGN-PLH 116 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSS-CCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCC-Ccc
Confidence 9999887666666555 999999999 454
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.14 E-value=1.9e-05 Score=66.49 Aligned_cols=86 Identities=17% Similarity=0.236 Sum_probs=45.3
Q ss_pred cCCCCCcEEECCCC-CCCHHHHHHH----hcCCCCCEEecCCCCCChHHHH----hhhcCCCCcEEEccCCCCChhhhhh
Q 009672 371 AGLSSLKSLNLDAR-QITDTGLAAL----TSLTGLTHLDLFGARITDSGAA----YLRNFKNLRSLEICGGGLTDAGVKH 441 (529)
Q Consensus 371 ~~~~~L~~L~l~~~-~~~~~~~~~l----~~~~~L~~L~l~~~~l~~~~~~----~~~~~~~L~~L~l~~~~l~~~~~~~ 441 (529)
.+-+.|++|+++++ .+.+.+...+ ..-..|+.|++++|++.+.+.. .+...+.|++|+|+.|.+++.+..+
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 34456666666663 6655433322 3345566666666666654432 2344556666666666666555443
Q ss_pred c----cCCCCCCeEecCCC
Q 009672 442 I----KDLSSLTLLNLSQN 456 (529)
Q Consensus 442 ~----~~~~~L~~L~l~~~ 456 (529)
+ ..-..|++|+|+++
T Consensus 118 la~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHTTTTCCCSEEECCCC
T ss_pred HHHHHhhCCceeEEECCCC
Confidence 3 22244555555543
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.06 E-value=1.5e-06 Score=77.50 Aligned_cols=41 Identities=22% Similarity=0.378 Sum_probs=20.1
Q ss_pred cCCCCCEEecCCCCCChHH--HHhhhcCCCCcEEEccCCCCCh
Q 009672 396 SLTGLTHLDLFGARITDSG--AAYLRNFKNLRSLEICGGGLTD 436 (529)
Q Consensus 396 ~~~~L~~L~l~~~~l~~~~--~~~~~~~~~L~~L~l~~~~l~~ 436 (529)
++++|+.|++++|.+++.. +..+..+++|+.|+|++|.+.+
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~ 210 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS 210 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC
Confidence 4455555555555555421 2333445555555555555544
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.99 E-value=5.7e-05 Score=63.53 Aligned_cols=110 Identities=15% Similarity=0.135 Sum_probs=60.8
Q ss_pred cCCCCCCeEeccCC-CCChhhh----hhhcCCCCCcEEECCCCCCCHHHHHH----HhcCCCCCEEecCCCCCChHHHHh
Q 009672 347 SGLTNLESINLSFT-GISDGSL----RKLAGLSSLKSLNLDARQITDTGLAA----LTSLTGLTHLDLFGARITDSGAAY 417 (529)
Q Consensus 347 ~~~~~L~~L~l~~~-~~~~~~~----~~l~~~~~L~~L~l~~~~~~~~~~~~----l~~~~~L~~L~l~~~~l~~~~~~~ 417 (529)
...+.|+.|+++++ .+.+.+. ..+..-..|+.|++++|.+.+.+... +..-..|+.|+|+.|.|++.+...
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 33455555555553 5554332 22334456666666666666554332 334466777777777777665443
Q ss_pred ----hhcCCCCcEEEccCC---CCChhhhhh----ccCCCCCCeEecCCC
Q 009672 418 ----LRNFKNLRSLEICGG---GLTDAGVKH----IKDLSSLTLLNLSQN 456 (529)
Q Consensus 418 ----~~~~~~L~~L~l~~~---~l~~~~~~~----~~~~~~L~~L~l~~~ 456 (529)
+.....|++|+++++ .+.+.+... +..-++|++|+++.+
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 345567777777654 445543332 233456666666655
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=97.97 E-value=3.7e-05 Score=68.52 Aligned_cols=85 Identities=21% Similarity=0.281 Sum_probs=59.2
Q ss_pred HHHHhcCCceeEEEecCcccCchh--hhhccCCCCCCeEeccCCcccCch-hhhhccCCCCCCEEEcCCCCccch-----
Q 009672 50 DVIASQGSSLLSVDLSGSDVTDSG--LIHLKDCSNLQSLDFNFCIQISDG-GLEHLRGLSNLTSLSFRRNNAITA----- 121 (529)
Q Consensus 50 ~~~~~~~~~l~~l~l~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~----- 121 (529)
......+++|++|+|++|.+++.. +..++.+++|+.|+|++| .+++. ....+..+ +|++|+|++|+. ..
T Consensus 163 ~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~l~~l~~l-~L~~L~L~~Npl-~~~~~~~ 239 (267)
T 3rw6_A 163 RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIKGL-KLEELWLDGNSL-CDTFRDQ 239 (267)
T ss_dssp HHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGGGGGGTTS-CCSEEECTTSTT-GGGCSSH
T ss_pred HHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCchhhhhcccC-CcceEEccCCcC-ccccCcc
Confidence 344456789999999999998733 345678999999999987 56654 23344444 899999999884 32
Q ss_pred --hHHHHHhCCCCCCEEe
Q 009672 122 --QGMKAFAGLINLVKLD 137 (529)
Q Consensus 122 --~~~~~~~~~~~L~~L~ 137 (529)
.....+..+++|+.|+
T Consensus 240 ~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 240 STYISAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHHHHHCTTCCEES
T ss_pred hhHHHHHHHHCcccCeEC
Confidence 2234566677777776
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=95.03 E-value=0.016 Score=45.26 Aligned_cols=53 Identities=19% Similarity=0.093 Sum_probs=33.6
Q ss_pred EEecCCCCCC--hHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCC
Q 009672 402 HLDLFGARIT--DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 457 (529)
Q Consensus 402 ~L~l~~~~l~--~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~ 457 (529)
.++.+++.++ ..+. . -.++|++|+|++|.++......|..+++|++|+|.+|+
T Consensus 12 ~v~Cs~~~L~~~~vP~-~--lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPT-A--FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCS-C--CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCC-C--CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 5566666665 3321 1 12367777777777777666666777777777777774
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=93.44 E-value=0.035 Score=43.29 Aligned_cols=55 Identities=24% Similarity=0.222 Sum_probs=38.1
Q ss_pred EEEccCCCCC--hhhhhhccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccC
Q 009672 426 SLEICGGGLT--DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484 (529)
Q Consensus 426 ~L~l~~~~l~--~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 484 (529)
.++-++++++ .. +..+. ++|++|+|++| .++......|..+++|+.|+|++|++.
T Consensus 12 ~v~Cs~~~L~~~~v-P~~lp--~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASL-PTAFP--VDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTS-CSCCC--TTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccC-CCCCC--cCCCEEECCCC-cCCccChhhhhhccccCEEEecCCCee
Confidence 5666666665 32 33222 46888888888 777776677777888888888888764
|
| >2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus} | Back alignment and structure |
|---|
Probab=86.31 E-value=0.62 Score=34.03 Aligned_cols=48 Identities=10% Similarity=0.016 Sum_probs=31.5
Q ss_pred cccCchhhhhccCCCCCCeEeccCCcccCchhhhhccCCCCCCEEEcCCC
Q 009672 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116 (529)
Q Consensus 67 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 116 (529)
..++.....+|..|..|+.+.|.. .+..++...|..|.+|+.+.+.+.
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~--~v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQP--NIGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECT--TSSCCCTTSSTTCTTCCCEEECCS
T ss_pred CccCEecHHHhcCCCCCcEEEcCC--chheEcHHHHhccCCccEEEEcCC
Confidence 445556666677777777777764 366666667777777777776653
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 529 | ||||
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 1e-13 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 2e-09 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 3e-09 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 1e-09 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 3e-08 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 1e-07 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 3e-07 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 1e-06 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 2e-06 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 2e-06 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 2e-06 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 3e-06 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 2e-05 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 6e-05 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 7e-05 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 3e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 3e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 4e-04 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 2e-08 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 3e-08 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 5e-08 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 1e-04 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 0.003 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 1e-07 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 2e-07 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 1e-06 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 5e-06 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 6e-05 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 1e-04 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 7e-04 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 4e-06 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 3e-05 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 5e-04 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 0.002 | |
| d2ca6a1 | 344 | c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom | 1e-05 | |
| d2ca6a1 | 344 | c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom | 0.001 | |
| d1h6ta2 | 210 | c.10.2.1 (A:31-240) Internalin B {Listeria monocyt | 3e-04 | |
| d1h6ta2 | 210 | c.10.2.1 (A:31-240) Internalin B {Listeria monocyt | 4e-04 | |
| d1h6ta2 | 210 | c.10.2.1 (A:31-240) Internalin B {Listeria monocyt | 0.001 | |
| d2omxa2 | 199 | c.10.2.1 (A:37-235) Internalin B {Listeria monocyt | 0.002 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 0.002 |
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 70.4 bits (171), Expect = 1e-13
Identities = 74/382 (19%), Positives = 137/382 (35%), Gaps = 32/382 (8%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+ + L ++VTD + D + +L + I ++ + L+NLT ++F N
Sbjct: 22 AEKMKTVLGKTNVTD--TVSQTDLDQVTTLQADRL-GIKS--IDGVEYLNNLTQINFSNN 76
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+ L LV + + + + +L I
Sbjct: 77 QL---TDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTN 133
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSIS--SVIFILCSMIIRLFCLHVFLTSLQKLTL 234
L S IS + + + + + L ++ L
Sbjct: 134 LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVL 193
Query: 235 LNLEGCPVTAACLDSLSAL------GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 288
L A + +S + +L L+LN QL D G + + +L L+L N
Sbjct: 194 AKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANN 251
Query: 289 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV-GSSGLRHLS 347
+I++ L L GLT L L L + I N++ L L L + + +S
Sbjct: 252 QISN--LAPLSGLTKLTELKLGANQI-----SNISPLAGLTALTNLELNENQLEDISPIS 304
Query: 348 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 407
L NL + L F ISD + ++ L+ L+ L +++ +++L +LT + L
Sbjct: 305 NLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFANNKVS--DVSSLANLTNINWLSAGH 360
Query: 408 ARITDSGAAYLRNFKNLRSLEI 429
+I+D L N + L +
Sbjct: 361 NQISDLTP--LANLTRITQLGL 380
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 57.3 bits (137), Expect = 2e-09
Identities = 42/180 (23%), Positives = 77/180 (42%), Gaps = 17/180 (9%)
Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191
NL +L L L ++ L L +L S++ PLSGLT L L++ ++
Sbjct: 220 NLDELSLNGN-----QLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQ 274
Query: 192 VTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLS 251
++ I+ L GL+ + +++L+ LT L L ++ + +S
Sbjct: 275 IS--NISPLAGLT----ALTNLELNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVS 326
Query: 252 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 311
+L L L ++S + + ++ L+ G N+I+D L L LT + L L+
Sbjct: 327 SLTKLQRLFFANNKVS--DVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLND 382
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 56.5 bits (135), Expect = 3e-09
Identities = 78/367 (21%), Positives = 144/367 (39%), Gaps = 29/367 (7%)
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD----SGIAYLKG 202
V+ L ++ +L + + L NL + S +++TD + L
Sbjct: 36 DTVSQTDLDQVTTLQADRLGI---KSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVD 92
Query: 203 LSISSVIFILCSMIIRLF----CLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFY 258
+ +++ + + L L NL +++S + +L
Sbjct: 93 ILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSG 152
Query: 259 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG-LTNLESLNLDSCGIGDE 317
L + + + +L L + + LTNLESL + I
Sbjct: 153 LTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQI--S 210
Query: 318 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 377
+ L L NL L L+ Q+ + L+ LTNL ++L+ IS+ L L+GL+ L
Sbjct: 211 DITPLGILTNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISN--LAPLSGLTKLT 266
Query: 378 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 437
L L A QI+ ++ L LT LT+L+L + + N KNL L + ++
Sbjct: 267 ELKLGANQIS--NISPLAGLTALTNLELN--ENQLEDISPISNLKNLTYLTLYFNNIS-- 320
Query: 438 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 497
+ + L+ L L + N ++D + ++ LT + L+ +++I+ L L L +
Sbjct: 321 DISPVSSLTKLQRLFFA-NNKVSD--VSSLANLTNINWLSAGHNQIS--DLTPLANLTRI 375
Query: 498 RSLTLES 504
L L
Sbjct: 376 TQLGLND 382
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.1 bits (138), Expect = 1e-09
Identities = 15/90 (16%), Positives = 37/90 (41%), Gaps = 10/90 (11%)
Query: 279 SLKVLNLGFNEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVNLT----GLCNLKCLEL 333
++ L++ E++D L L + + LD CG+ + +++ L L L
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 334 SDTQVGSSGLRHL-----SGLTNLESINLS 358
++G G+ + + ++ ++L
Sbjct: 63 RSNELGDVGVHCVLQGLQTPSCKIQKLSLQ 92
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.8 bits (127), Expect = 3e-08
Identities = 16/91 (17%), Positives = 35/91 (38%), Gaps = 10/91 (10%)
Query: 351 NLESINLSFTGISDGSLRKLA-GLSSLKSLNLDARQITDTGL----AALTSLTGLTHLDL 405
+++S+++ +SD +L L + + LD +T+ +AL L L+L
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 406 FGARITDSGAAYL-----RNFKNLRSLEICG 431
+ D G + ++ L +
Sbjct: 63 RSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.9 bits (122), Expect = 1e-07
Identities = 13/91 (14%), Positives = 36/91 (39%), Gaps = 10/91 (10%)
Query: 327 NLKCLELSDTQVGSSGLRHL-SGLTNLESINLSFTGISDGSLRKLA----GLSSLKSLNL 381
+++ L++ ++ + L L + + L G+++ + ++ +L LNL
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 382 DARQITDTGLAALTSL-----TGLTHLDLFG 407
+ ++ D G+ + + L L
Sbjct: 63 RSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.4 bits (118), Expect = 3e-07
Identities = 20/80 (25%), Positives = 31/80 (38%), Gaps = 9/80 (11%)
Query: 279 SLKVLNLGFNEITDECLVH----LKGLTNLESLNLDSCGIGDEGLVNLTG-----LCNLK 329
L+VL L +++D L +L L+L + +GD G++ L C L+
Sbjct: 370 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLE 429
Query: 330 CLELSDTQVGSSGLRHLSGL 349
L L D L L
Sbjct: 430 QLVLYDIYWSEEMEDRLQAL 449
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.8 bits (114), Expect = 1e-06
Identities = 21/80 (26%), Positives = 29/80 (36%), Gaps = 9/80 (11%)
Query: 255 SLFYLNLNRCQLSDDGCEK----FSKIGSLKVLNLGFNEITDECLVHL-----KGLTNLE 305
L L L C +SD C SL+ L+L N + D ++ L + LE
Sbjct: 370 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLE 429
Query: 306 SLNLDSCGIGDEGLVNLTGL 325
L L +E L L
Sbjct: 430 QLVLYDIYWSEEMEDRLQAL 449
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.0 bits (112), Expect = 2e-06
Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 9/90 (10%)
Query: 297 HLKGLTNLESLNLDSCGIGDEGLVN----LTGLCNLKCLELSDTQVGSSGLRHLSG---- 348
+ + L L L C + D + L +L+ L+LS+ +G +G+ L
Sbjct: 364 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ 423
Query: 349 -LTNLESINLSFTGISDGSLRKLAGLSSLK 377
LE + L S+ +L L K
Sbjct: 424 PGCLLEQLVLYDIYWSEEMEDRLQALEKDK 453
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.0 bits (112), Expect = 2e-06
Identities = 21/93 (22%), Positives = 43/93 (46%), Gaps = 11/93 (11%)
Query: 423 NLRSLEICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLELIS----GLTGLVSLN 477
+++SL+I L+DA + L ++ L +C LT+ + IS L LN
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLD-DCGLTEARCKDISSALRVNPALAELN 61
Query: 478 VSNSRITSAGLRHL-----KPLKNLRSLTLESC 505
+ ++ + G+ + P ++ L+L++C
Sbjct: 62 LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.7 bits (111), Expect = 2e-06
Identities = 19/92 (20%), Positives = 38/92 (41%), Gaps = 10/92 (10%)
Query: 232 LTLLNLEGCPVTAACLDSL-SALGSLFYLNLNRCQLSDDGCEKFSKI----GSLKVLNLG 286
+ L+++ ++ A L L + L+ C L++ C+ S +L LNL
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63
Query: 287 FNEITDECLVHL-----KGLTNLESLNLDSCG 313
NE+ D + + ++ L+L +C
Sbjct: 64 SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC 95
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.3 bits (110), Expect = 3e-06
Identities = 20/91 (21%), Positives = 38/91 (41%), Gaps = 11/91 (12%)
Query: 400 LTHLDLFGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKHI----KDLSSLTLLNLS 454
+ LD+ ++D+ A L + + + + GLT+A K I + +L LNL
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63
Query: 455 QNCNLTDKTLELI-----SGLTGLVSLNVSN 480
N L D + + + + L++ N
Sbjct: 64 SN-ELGDVGVHCVLQGLQTPSCKIQKLSLQN 93
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.0 bits (104), Expect = 2e-05
Identities = 16/81 (19%), Positives = 30/81 (37%), Gaps = 9/81 (11%)
Query: 374 SSLKSLNLDARQITDTGLA----ALTSLTGLTHLDLFGARITDSGAAYL-----RNFKNL 424
S L+ L L ++D+ + L + L LDL + D+G L + L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428
Query: 425 RSLEICGGGLTDAGVKHIKDL 445
L + ++ ++ L
Sbjct: 429 EQLVLYDIYWSEEMEDRLQAL 449
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.0 bits (99), Expect = 6e-05
Identities = 17/90 (18%), Positives = 33/90 (36%), Gaps = 7/90 (7%)
Query: 82 NLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFAGLI----NLVKL 136
++QSLD C ++SD L L + +T K + + L +L
Sbjct: 3 DIQSLDIQ-CEELSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAEL 60
Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCN 166
+L G+ + ++ S I+ +
Sbjct: 61 NLRSNELGDVGVHCVLQGLQTPSCKIQKLS 90
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.0 bits (99), Expect = 7e-05
Identities = 21/95 (22%), Positives = 35/95 (36%), Gaps = 10/95 (10%)
Query: 345 HLSGLTNLESINLSFTGISDGSLRKLA----GLSSLKSLNLDARQITDTGLAALTS---- 396
+ L + L+ +SD S LA SL+ L+L + D G+ L
Sbjct: 364 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ 423
Query: 397 -LTGLTHLDLFGARITDSGAAYLRN-FKNLRSLEI 429
L L L+ ++ L+ K+ SL +
Sbjct: 424 PGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRV 458
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.1 bits (94), Expect = 3e-04
Identities = 20/90 (22%), Positives = 32/90 (35%), Gaps = 9/90 (10%)
Query: 221 CLHVFLTSLQKLTLLNLEGCPVTAACL----DSLSALGSLFYLNLNRCQLSDDGCEKFSK 276
L +L L C V+ + +L A SL L+L+ L D G + +
Sbjct: 360 LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVE 419
Query: 277 I-----GSLKVLNLGFNEITDECLVHLKGL 301
L+ L L ++E L+ L
Sbjct: 420 SVRQPGCLLEQLVLYDIYWSEEMEDRLQAL 449
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.7 bits (93), Expect = 3e-04
Identities = 13/74 (17%), Positives = 28/74 (37%), Gaps = 6/74 (8%)
Query: 447 SLTLLNLSQNCNLTDKTL-ELISGLTGLVSLNVSNSRITSAGLRH----LKPLKNLRSLT 501
+ L++ L+D EL+ L + + + +T A + L+ L L
Sbjct: 3 DIQSLDIQCE-ELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61
Query: 502 LESCKVTANDIKRL 515
L S ++ + +
Sbjct: 62 LRSNELGDVGVHCV 75
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.3 bits (92), Expect = 4e-04
Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 12/94 (12%)
Query: 441 HIKDLSSLTLLNLSQNCNLTDKTL----ELISGLTGLVSLNVSNSRITSAGLRHL----- 491
+ S L +L L+ +C+++D + + L L++SN+ + AG+ L
Sbjct: 364 LGQPGSVLRVLWLA-DCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVR 422
Query: 492 KPLKNLRSLTLESCKVTANDIKRLQS--RDLPNL 523
+P L L L + RLQ+ +D P+L
Sbjct: 423 QPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSL 456
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 53.5 bits (127), Expect = 2e-08
Identities = 45/282 (15%), Positives = 101/282 (35%), Gaps = 20/282 (7%)
Query: 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC 165
+ L + N IT F L NL L L L+KLE L +
Sbjct: 31 PDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL-SK 88
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVF 225
N + + P L+ L++ +++T + GL+ V+ + + + +
Sbjct: 89 NQLKEL---PEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA 145
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285
++KL+ + + +T SL L+L+ +++ + +L L L
Sbjct: 146 FQGMKKLSYIRIADTNITTIPQGLPP---SLTELHLDGNKITKVDAASLKGLNNLAKLGL 202
Query: 286 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS----- 340
FN I+ L +L L+L++ + + L ++ + L + + +
Sbjct: 203 SFNSISAVDNGSLANTPHLRELHLNNNKL-VKVPGGLADHKYIQVVYLHNNNISAIGSND 261
Query: 341 -SGLRHLSGLTNLESINLS-----FTGISDGSLRKLAGLSSL 376
+ + + ++L + I + R + +++
Sbjct: 262 FCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAV 303
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 52.7 bits (125), Expect = 3e-08
Identities = 48/278 (17%), Positives = 93/278 (33%), Gaps = 12/278 (4%)
Query: 232 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 291
LL+L+ +T L +L L L ++S F+ + L+ L L N++
Sbjct: 33 TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 92
Query: 292 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 351
+ K L L + + L + ++ G G+
Sbjct: 93 ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIE-NGAFQGMKK 151
Query: 352 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 411
L I ++ T I+ SL L+LD +IT A+L L L L L I+
Sbjct: 152 LSYIRIADTNITTIP---QGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 208
Query: 412 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC-----NLTDKTLEL 466
L N +LR L + L + D + ++ L N +
Sbjct: 209 AVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGY 267
Query: 467 ISGLTGLVSLNVSNSRITSAGLRH--LKPLKNLRSLTL 502
+ +++ ++ + ++ + + ++ L
Sbjct: 268 NTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 52.3 bits (124), Expect = 5e-08
Identities = 52/277 (18%), Positives = 96/277 (34%), Gaps = 12/277 (4%)
Query: 255 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 314
L+L ++++ F + +L L L N+I+ L LE L L +
Sbjct: 32 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 91
Query: 315 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 374
+ L L+ E T+V S L+ + +E S G+
Sbjct: 92 KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK-SSGIENGAFQGMK 150
Query: 375 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 434
L + + IT S LT L L G +IT AA L+ NL L + +
Sbjct: 151 KLSYIRIADTNITTIPQGLPPS---LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 207
Query: 435 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS------AGL 488
+ + + L L+L+ N L ++ + + + N+ I++
Sbjct: 208 SAVDNGSLANTPHLRELHLN-NNKLVKVPGG-LADHKYIQVVYLHNNNISAIGSNDFCPP 265
Query: 489 RHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 525
+ + ++L S V +I+ R + +
Sbjct: 266 GYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAA 302
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 41.9 bits (97), Expect = 1e-04
Identities = 26/162 (16%), Positives = 56/162 (34%), Gaps = 5/162 (3%)
Query: 350 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 409
+ ++L I++ L +L +L L +I+ A L L L L +
Sbjct: 31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90
Query: 410 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 469
+ + + + LR E + + + + + L + G
Sbjct: 91 LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGT--NPLKSSGIENGAFQG 148
Query: 470 LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAND 511
+ L + ++++ IT+ +L L L+ K+T D
Sbjct: 149 MKKLSYIRIADTNITTIPQGL---PPSLTELHLDGNKITKVD 187
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 37.3 bits (85), Expect = 0.003
Identities = 43/261 (16%), Positives = 79/261 (30%), Gaps = 16/261 (6%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+DL + +T+ K+ NL +L +IS L L L +N
Sbjct: 31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYLSKN 89
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+ K L L + E L ++ +E + +
Sbjct: 90 Q-LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGT--NPLKSSGIENGAF 146
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
G+ L ++I+ + +T L+ + L L L L
Sbjct: 147 QGMKKLSYIRIADTNITTIPQGLPPSLTE-----LHLDGNKITKVDAASLKGLNNLAKLG 201
Query: 237 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD---- 292
L ++A SL+ L L+LN +L ++V+ L N I+
Sbjct: 202 LSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLAD-HKYIQVVYLHNNNISAIGSN 260
Query: 293 --ECLVHLKGLTNLESLNLDS 311
+ + ++L S
Sbjct: 261 DFCPPGYNTKKASYSGVSLFS 281
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.9 bits (120), Expect = 1e-07
Identities = 48/251 (19%), Positives = 91/251 (36%), Gaps = 14/251 (5%)
Query: 283 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 342
L+L + + L + + + D+ L ++ ++LS++ + S
Sbjct: 5 LDLTGKNLHPDVTGRLLSQ-GVIAFRCPRSFM-DQPLAEHFSPFRVQHMDLSNSVIEVST 62
Query: 343 LR-HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL--------DARQITDTGLAA 393
L LS + L++++L +SD + LA S+L LNL A Q + +
Sbjct: 63 LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 122
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 453
L L D + + A L ++ +L L+L
Sbjct: 123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 182
Query: 454 SQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCKVTANDI 512
S + L + + L L L++S I L L + L++L + V +
Sbjct: 183 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTL 241
Query: 513 KRLQSRDLPNL 523
+ L+ LP+L
Sbjct: 242 QLLKEA-LPHL 251
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.5 bits (119), Expect = 2e-07
Identities = 39/244 (15%), Positives = 81/244 (33%), Gaps = 9/244 (3%)
Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191
++ R + L +++ +++ + LS + L++L + +
Sbjct: 24 GVIAFRCPRS-FMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR 82
Query: 192 VTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLS 251
++D + L S + + F L L+S +L LNL C ++
Sbjct: 83 LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA 142
Query: 252 ALGSLFYLNLNR-------CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 304
+ Q SD + + + ++C L L
Sbjct: 143 VAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYL 202
Query: 305 ESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 363
+ L+L C I E L+ L + LK L++ + L +L+ FT I+
Sbjct: 203 QHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQINCSHFTTIA 262
Query: 364 DGSL 367
++
Sbjct: 263 RPTI 266
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.2 bits (113), Expect = 1e-06
Identities = 41/242 (16%), Positives = 81/242 (33%), Gaps = 12/242 (4%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+++ S + H +Q +D + + L S L +LS
Sbjct: 24 GVIAFRCPRSFMDQPLAEHFS-PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR 82
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
++ + A NLV+L+L C+ L +L+ LN+ WC T+ ++
Sbjct: 83 -LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV 141
Query: 176 LSGLTNLK----SLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQK 231
+ +L + S ++ L + V L ++ L
Sbjct: 142 AVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNY 201
Query: 232 LTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 290
L L+L C + L L + +L L + + D + + +L L + +
Sbjct: 202 LQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKE--ALPHLQINCSHF 258
Query: 291 TD 292
T
Sbjct: 259 TT 260
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.9 bits (107), Expect = 5e-06
Identities = 47/260 (18%), Positives = 88/260 (33%), Gaps = 15/260 (5%)
Query: 259 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 318
L+L L D + G + + + D+ L ++ ++L + I
Sbjct: 5 LDLTGKNLHPDVTGRLLSQG-VIAFRCPRSFM-DQPLAEHFSPFRVQHMDLSNSVIEVST 62
Query: 319 LVNLTGLC-NLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-----TGISDGSLRKLAG 372
L + C L+ L L ++ + L+ +NL +NLS L +
Sbjct: 63 LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 122
Query: 373 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG----ARITDSGAAYLRNFKNLRSLE 428
L L +A +T L+L G + +D R +
Sbjct: 123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 182
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
L + + L+ L L+LS+ ++ +TL + + L +L V + L
Sbjct: 183 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTL 241
Query: 489 RHLKPLKNLRSLTLESCKVT 508
+ LK + L L + T
Sbjct: 242 QLLK--EALPHLQINCSHFT 259
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.4 bits (98), Expect = 6e-05
Identities = 43/244 (17%), Positives = 77/244 (31%), Gaps = 16/244 (6%)
Query: 228 SLQKLTLLNLEGCPVTAACLDS-LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 286
S ++ ++L + + L LS L L+L +LSD +K +L LNL
Sbjct: 44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS 103
Query: 287 FN-----EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 341
L L L + + L LS +
Sbjct: 104 GCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQ 163
Query: 342 GLRHLSGLTNLESI----NLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTS 396
+ + ++ + + ++ L+ L+ L+L I L L
Sbjct: 164 KSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGE 223
Query: 397 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 456
+ L L +FG + D L+ + L L+I T I + + + +
Sbjct: 224 IPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTTIARPTIGNKKNQEIWGIK-- 278
Query: 457 CNLT 460
C LT
Sbjct: 279 CRLT 282
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.6 bits (96), Expect = 1e-04
Identities = 25/107 (23%), Positives = 42/107 (39%), Gaps = 3/107 (2%)
Query: 354 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 413
+++L+ + +L + + R D LA S + H+DL + I S
Sbjct: 4 TLDLTGKNLHPDVTGRLLSQG-VIAFRC-PRSFMDQPLAEHFSPFRVQHMDLSNSVIEVS 61
Query: 414 G-AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 459
L L++L + G L+D V + S+L LNLS
Sbjct: 62 TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGF 108
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.3 bits (90), Expect = 7e-04
Identities = 49/290 (16%), Positives = 93/290 (32%), Gaps = 41/290 (14%)
Query: 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
LDL +H + L+ + + D + ++ + +S S +
Sbjct: 4 TLDLTGKN-LHPDV--TGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEV 60
Query: 195 SGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALG 254
S LH L+ KL L+LEG ++ +++L+
Sbjct: 61 ST-------------------------LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNS 95
Query: 255 SLFYLNLNRCQLSDDG-----CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 309
+L LNL+ C + S++ L + + + LNL
Sbjct: 96 NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL 155
Query: 310 DSCGIGDEGLVNLTGLCNLKCLELSDT----QVGSSGLRHLSGLTNLESINLSF-TGISD 364
+ T + L D + + + L L+ ++LS I
Sbjct: 156 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIP 215
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 414
+L +L + +LK+L + + D L L L HL + + T
Sbjct: 216 ETLLELGEIPTLKTLQV-FGIVPDGTLQLLKE--ALPHLQINCSHFTTIA 262
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 45.8 bits (107), Expect = 4e-06
Identities = 37/222 (16%), Positives = 75/222 (33%), Gaps = 25/222 (11%)
Query: 128 AGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
L N +K+ + V L + +L+ + ++ + L NL L++
Sbjct: 16 PALANAIKIAAGKSNVT--DTVTQADLDGITTLSAFGTGV---TTIEGVQYLNNLIGLEL 70
Query: 188 SCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACL 247
+++TD +A LK L+ + + + + + + + + A L
Sbjct: 71 KDNQITD--LAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGL 128
Query: 248 DSLSALGSLFYLNLNRCQL--------------SDDGCEKFSKIGSLKVLNLGFNEITDE 293
+L L N L + + L L N+I+D
Sbjct: 129 SNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD- 187
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 335
+ L L NL ++L + I + L NL + L++
Sbjct: 188 -ISPLASLPNLIEVHLKNNQI--SDVSPLANTSNLFIVTLTN 226
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 43.1 bits (100), Expect = 3e-05
Identities = 39/229 (17%), Positives = 76/229 (33%), Gaps = 23/229 (10%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++ + + S+VTD + D + +L ++ +E ++ L+NL L + N
Sbjct: 19 ANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGT-GVTT--IEGVQYLNNLIGLELKDN 73
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+K NL K+ + V+ ++ ITD
Sbjct: 74 QITDLAPLK------NLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTP--- 124
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
L L D S+ L +L KLT L
Sbjct: 125 -----LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLK 179
Query: 237 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285
+ ++ + L++L +L ++L Q+SD + +L ++ L
Sbjct: 180 ADDNKIS--DISPLASLPNLIEVHLKNNQISD--VSPLANTSNLFIVTL 224
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 39.2 bits (90), Expect = 5e-04
Identities = 32/212 (15%), Positives = 70/212 (33%), Gaps = 23/212 (10%)
Query: 283 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 342
+ G + +TD V L + +L+ G+ + + L NL LEL D Q+
Sbjct: 24 IAAGKSNVTDT--VTQADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKDNQITDLA 79
Query: 343 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 402
++ + + + + GL+ L L +
Sbjct: 80 PLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLN 139
Query: 403 LDLFGARITD--------------SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 448
+ + S L N L +L+ ++D + + L +L
Sbjct: 140 QITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD--ISPLASLPNL 197
Query: 449 TLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 480
++L N ++D + ++ + L + ++N
Sbjct: 198 IEVHLK-NNQISD--VSPLANTSNLFIVTLTN 226
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 37.3 bits (85), Expect = 0.002
Identities = 42/196 (21%), Positives = 69/196 (35%), Gaps = 20/196 (10%)
Query: 224 VFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 283
V L +T L+ G VT ++ + L +L L L Q++D K + L
Sbjct: 35 VTQADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELEL 92
Query: 284 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL--------------CNLK 329
+ + T + + GL NL L
Sbjct: 93 SGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTN 152
Query: 330 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 389
LS S L L+ L+ L ++ ISD + LA L +L ++L QI+D
Sbjct: 153 LQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD--ISPLASLPNLIEVHLKNNQISD- 209
Query: 390 GLAALTSLTGLTHLDL 405
++ L + + L + L
Sbjct: 210 -VSPLANTSNLFIVTL 224
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 45.3 bits (105), Expect = 1e-05
Identities = 53/291 (18%), Positives = 91/291 (31%), Gaps = 26/291 (8%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIH----LKDCSNLQSLDF--NFCIQISDGGLEHLRGLS- 106
+ S+ + LSG+ + + +L+ +F F ++ D E LR L
Sbjct: 28 LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQ 87
Query: 107 ---NLTSLSFRRNNAITAQGMKAFAGL-INLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
L R + + LE + GL G +L
Sbjct: 88 ALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQE 147
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCL 222
N + S + L+ K + L ++ L
Sbjct: 148 LAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLL 207
Query: 223 HVFLTSLQKLTLLNLEGCPVT----AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI- 277
L Q+L +L+L+ T +A +L + +L L LN C LS G
Sbjct: 208 LEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAF 267
Query: 278 -----GSLKVLNLGFNEITDECLVHL-----KGLTNLESLNLDSCGIGDEG 318
L+ L L +NEI + + L + + +L L L+ +E
Sbjct: 268 SKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 318
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 39.1 bits (89), Expect = 0.001
Identities = 41/350 (11%), Positives = 93/350 (26%), Gaps = 40/350 (11%)
Query: 58 SLLSVDLSGSDVTDSGLIH----LKDCSNLQSLDFNFCIQISDGGL----EHLRGLSNLT 109
S+ L +T L + +++ + + I E++ +L
Sbjct: 4 SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLE 62
Query: 110 SLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCIT 169
F + E + L+ L + + +
Sbjct: 63 IAEFSDIF------------TGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 110
Query: 170 DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSL 229
+ + LS T L+ L + + + A + + L + L
Sbjct: 111 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL 170
Query: 230 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 289
+ ++ + L ++ + + L + N +
Sbjct: 171 ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHL 230
Query: 290 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL------TGLCNLKCLELSDTQVGSSGL 343
+ + LK NL L L+ C + G + L+ L L ++ +
Sbjct: 231 GSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAV 290
Query: 344 RHL-----SGLTNLESINLSFTGISD--------GSLRKLAGLSSLKSLN 380
R L + +L + L+ S+ + G L L+
Sbjct: 291 RTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELD 340
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 40.0 bits (92), Expect = 3e-04
Identities = 41/198 (20%), Positives = 80/198 (40%), Gaps = 17/198 (8%)
Query: 283 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 342
NL +TD V L +++ + ++ I + + + L N+ L L+ ++ +
Sbjct: 29 DNLKKKSVTD--AVTQNELNSIDQIIANNSDI--KSVQGIQYLPNVTKLFLNGNKL--TD 82
Query: 343 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 402
++ L+ L NL + L + D S K K +L + + L L L
Sbjct: 83 IKPLANLKNLGWLFLDENKVKDLSSLK----DLKKLKSLSLEHNGISDINGLVHLPQLES 138
Query: 403 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 462
L L +ITD + + + + + + L+ L L LS+N +++D
Sbjct: 139 LYLGNNKITD----ITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKN-HISD- 192
Query: 463 TLELISGLTGLVSLNVSN 480
L ++GL L L + +
Sbjct: 193 -LRALAGLKNLDVLELFS 209
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 39.6 bits (91), Expect = 4e-04
Identities = 33/197 (16%), Positives = 60/197 (30%), Gaps = 23/197 (11%)
Query: 129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
+K +L++ + V L ++ + + ++ + L N+ L ++
Sbjct: 22 AFAETIKDNLKKKS--VTDAVTQNELNSIDQIIANNSDI---KSVQGIQYLPNVTKLFLN 76
Query: 189 CSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPV------ 242
+K+T I L L +F+ + + L L N
Sbjct: 77 GNKLT--DIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLP 134
Query: 243 --------TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 294
D L+ + + L+ L L N I+D
Sbjct: 135 QLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD-- 192
Query: 295 LVHLKGLTNLESLNLDS 311
L L GL NL+ L L S
Sbjct: 193 LRALAGLKNLDVLELFS 209
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 38.1 bits (87), Expect = 0.001
Identities = 34/184 (18%), Positives = 60/184 (32%), Gaps = 14/184 (7%)
Query: 224 VFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 283
V L + + + + + L ++ L LN +L+D + +LK L
Sbjct: 40 VTQNELNSIDQIIANNSDIK--SVQGIQYLPNVTKLFLNGNKLTDIKP-----LANLKNL 92
Query: 284 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 343
F + + + + ++ + L
Sbjct: 93 GWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVL 152
Query: 344 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 403
L+ L L + + I LAGL+ L++L L I+D L AL L L L
Sbjct: 153 SRLTKLDTLSLEDNQISDIVP-----LAGLTKLQNLYLSKNHISD--LRALAGLKNLDVL 205
Query: 404 DLFG 407
+LF
Sbjct: 206 ELFS 209
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 37.7 bits (86), Expect = 0.002
Identities = 34/204 (16%), Positives = 70/204 (34%), Gaps = 20/204 (9%)
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
L+ + N + L + L +R G+ ++ G+ L +L
Sbjct: 16 ALAEKMKTVLGKTNVT---DTVSQTDLDQVTTLQADRL-----GIKSIDGVEYLNNLTQI 67
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLH 223
+ +D+ PL LT L + ++ +++ D +F I
Sbjct: 68 NFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNL 127
Query: 224 VFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 283
L L+ + + ++ LN + + + +L+ L
Sbjct: 128 TNLNRLELSSNTISDISALSGLT----------SLQQLNFSSNQVTDLKPLANLTTLERL 177
Query: 284 NLGFNEITDECLVHLKGLTNLESL 307
++ N+++D + L LTNLESL
Sbjct: 178 DISSNKVSD--ISVLAKLTNLESL 199
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 36.2 bits (83), Expect = 0.002
Identities = 22/110 (20%), Positives = 38/110 (34%), Gaps = 8/110 (7%)
Query: 281 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD--EGLVNLTGLCNLKCLELSDTQV 338
+VL+L ++T L HL+ L + L+L + L L L L+ + + V
Sbjct: 1 RVLHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 58
Query: 339 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L + L +++ L L LNL +
Sbjct: 59 DGVANLPRLQELLLCNNRLQ----QSAAIQPLVSCPRLVLLNLQGNSLCQ 104
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 529 | |||
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.92 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.92 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.9 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.89 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.86 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.85 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.84 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.84 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.82 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.82 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.81 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.76 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.75 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.74 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.69 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.67 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.66 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.66 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.59 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.58 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.58 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.56 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.53 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.51 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.5 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.48 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.42 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.4 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.38 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.37 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.33 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.27 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.11 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.1 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 98.95 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 98.89 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 98.32 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 98.29 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 98.13 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 98.13 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.12 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.01 |
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.92 E-value=2.2e-23 Score=200.21 Aligned_cols=123 Identities=28% Similarity=0.427 Sum_probs=57.2
Q ss_pred CCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeE
Q 009672 372 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 451 (529)
Q Consensus 372 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L 451 (529)
.+++|+.++++++.+... ..+..++.++.+.+..|.+++.. .+..+++++.|++++|.+++.. .+..+++|++|
T Consensus 261 ~~~~L~~L~l~~~~l~~~--~~~~~~~~l~~l~~~~n~l~~~~--~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L 334 (384)
T d2omza2 261 GLTKLTELKLGANQISNI--SPLAGLTALTNLELNENQLEDIS--PISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRL 334 (384)
T ss_dssp TCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCSCCG--GGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEE
T ss_pred ccccCCEeeccCcccCCC--Ccccccccccccccccccccccc--ccchhcccCeEECCCCCCCCCc--ccccCCCCCEE
Confidence 334444444444443332 12334444444444444444321 2344455555555555554432 24445555555
Q ss_pred ecCCCCCCChhHHHHHhCCCCCCeeeccCCccChhHHHhccCCCCCcEEeecCc
Q 009672 452 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 505 (529)
Q Consensus 452 ~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 505 (529)
++++| .++... .+.++++|+.|++++|++++..+ +.++++|++|+|++|
T Consensus 335 ~L~~n-~l~~l~--~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N 383 (384)
T d2omza2 335 FFANN-KVSDVS--SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383 (384)
T ss_dssp ECCSS-CCCCCG--GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred ECCCC-CCCCCh--hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence 55555 444321 34555555555555555554332 455555666665554
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.92 E-value=6e-23 Score=197.15 Aligned_cols=189 Identities=31% Similarity=0.452 Sum_probs=112.9
Q ss_pred cCCCccEEEccCCCCChHHHHhhcCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeE
Q 009672 276 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 355 (529)
Q Consensus 276 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 355 (529)
.+++++.+.++++.+.+..+ ...+++|++|++.+|.+... ..+..+++|+.+++++|.+.+.. .+..+++|+.+
T Consensus 195 ~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L 268 (384)
T d2omza2 195 KLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLA--PLSGLTKLTEL 268 (384)
T ss_dssp GCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSEE
T ss_pred cccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCc--chhhcccccchhccccCccCCCC--cccccccCCEe
Confidence 44455555555554443222 23345555555555554432 23445556666666665554432 24555666666
Q ss_pred eccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCC
Q 009672 356 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 435 (529)
Q Consensus 356 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~ 435 (529)
+++++.+.... .+..++.++.+.+..+.+... ..+..+++++.+++++|++++.. .+..+++|++|++++|+++
T Consensus 269 ~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~ 342 (384)
T d2omza2 269 KLGANQISNIS--PLAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVS 342 (384)
T ss_dssp ECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCC
T ss_pred eccCcccCCCC--ccccccccccccccccccccc--cccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCC
Confidence 66666555422 345566677777777666652 33556677777777777776653 2566777777777777776
Q ss_pred hhhhhhccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCC
Q 009672 436 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 481 (529)
Q Consensus 436 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 481 (529)
+. ..+.++++|++|++++| .+++..+ +.++++|+.|+|++|
T Consensus 343 ~l--~~l~~l~~L~~L~l~~N-~l~~l~~--l~~l~~L~~L~L~~N 383 (384)
T d2omza2 343 DV--SSLANLTNINWLSAGHN-QISDLTP--LANLTRITQLGLNDQ 383 (384)
T ss_dssp CC--GGGGGCTTCCEEECCSS-CCCBCGG--GTTCTTCSEEECCCE
T ss_pred CC--hhHcCCCCCCEEECCCC-cCCCChh--hccCCCCCEeeCCCC
Confidence 53 24667777777777777 6666543 667777777777776
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=1.1e-21 Score=192.97 Aligned_cols=396 Identities=25% Similarity=0.298 Sum_probs=227.3
Q ss_pred CCCCeEeccCCcccCchhhh-hccCCCCCCEEEcCCCCccchh----HHHHHhCCCCCCEEeccCcccccccccccc---
Q 009672 81 SNLQSLDFNFCIQISDGGLE-HLRGLSNLTSLSFRRNNAITAQ----GMKAFAGLINLVKLDLERCTRIHGGLVNLK--- 152 (529)
Q Consensus 81 ~~L~~L~l~~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--- 152 (529)
++|+.||++++ .+++.+.. .+..+++++.|+|++|. +++. +...+..+++|++|++++|.....+...+.
T Consensus 2 ~~l~~ld~~~~-~i~~~~~~~l~~~l~~l~~L~L~~~~-i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l 79 (460)
T d1z7xw1 2 LDIQSLDIQCE-ELSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL 79 (460)
T ss_dssp EEEEEEEEESC-CCCHHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred CCCCEEEeeCC-cCChHHHHHHHHhCCCCCEEEeCCCC-CCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHH
Confidence 35788888765 57665543 35677888888888886 4543 344556777777777777643322222221
Q ss_pred --CCCcCcEEeccCCcccCcccc----ccccCCCCCCeEEccCCCCChhHHHHhhccCccchhhhhhhhHHHhhhhhhhh
Q 009672 153 --GLMKLESLNIKWCNCITDSDM----KPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFL 226 (529)
Q Consensus 153 --~~~~L~~L~l~~~~~~~~~~~----~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (529)
...+|++|++++|. +++... ..+..+++|++|++++|.+++.+...+...
T Consensus 80 ~~~~~~L~~L~L~~n~-it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~----------------------- 135 (460)
T d1z7xw1 80 QTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEG----------------------- 135 (460)
T ss_dssp CSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHH-----------------------
T ss_pred hcCCCCCCEEECCCCC-ccccccccccchhhccccccccccccccchhhhhhhhhhc-----------------------
Confidence 12345555555532 332211 233344555555555554444333222110
Q ss_pred cccCCccEEEccCCCCCHHHHHHhh-cCCCCCeEecCCCcCChhh----hHhhhcCCCccEEEccCCCCChHHHH----h
Q 009672 227 TSLQKLTLLNLEGCPVTAACLDSLS-ALGSLFYLNLNRCQLSDDG----CEKFSKIGSLKVLNLGFNEITDECLV----H 297 (529)
Q Consensus 227 ~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~~~~----~ 297 (529)
+. ................... ...+.....++.+.++++........ .
T Consensus 136 -----------------------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~ 192 (460)
T d1z7xw1 136 -----------------------LLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQG 192 (460)
T ss_dssp -----------------------HTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHH
T ss_pred -----------------------ccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccc
Confidence 00 1112222232222222111 11222344555555555444321111 1
Q ss_pred h-cCCCCCCEEECCCCCCChhh----hhhhcCCCCCCeEEcCCCccChhh-----hhhccCCCCCCeEeccCCCCChhhh
Q 009672 298 L-KGLTNLESLNLDSCGIGDEG----LVNLTGLCNLKCLELSDTQVGSSG-----LRHLSGLTNLESINLSFTGISDGSL 367 (529)
Q Consensus 298 ~-~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~~~~ 367 (529)
+ ........+.+.++...... ...+...+.++.+.+.++.+.... .........++.+++++|.+.....
T Consensus 193 l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~ 272 (460)
T d1z7xw1 193 LKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGC 272 (460)
T ss_dssp HHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHH
T ss_pred cccccccccccccccccccchhhhcccccccccccccccchhhccccccccchhhccccccccccccccccccccccccc
Confidence 1 12334555666655443221 122334566777777766544322 1223445677888888777765432
Q ss_pred ----hhhcCCCCCcEEECCCCCCCHHHHHHHh-----cCCCCCEEecCCCCCChHHHH----hhhcCCCCcEEEccCCCC
Q 009672 368 ----RKLAGLSSLKSLNLDARQITDTGLAALT-----SLTGLTHLDLFGARITDSGAA----YLRNFKNLRSLEICGGGL 434 (529)
Q Consensus 368 ----~~l~~~~~L~~L~l~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~l~~~~~~----~~~~~~~L~~L~l~~~~l 434 (529)
..+...+.++.+++++|.+.+.+...+. ....|+.+++++|.++..... .+..+++|++|++++|++
T Consensus 273 ~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i 352 (460)
T d1z7xw1 273 GDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRL 352 (460)
T ss_dssp HHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBC
T ss_pred ccccccccccccccccccccccccccccchhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecc
Confidence 2334567888888888888765544432 345788999988888765433 335678899999999998
Q ss_pred Chhhhhhc-----cCCCCCCeEecCCCCCCChhH----HHHHhCCCCCCeeeccCCccChhHHHhc----c-CCCCCcEE
Q 009672 435 TDAGVKHI-----KDLSSLTLLNLSQNCNLTDKT----LELISGLTGLVSLNVSNSRITSAGLRHL----K-PLKNLRSL 500 (529)
Q Consensus 435 ~~~~~~~~-----~~~~~L~~L~l~~~~~l~~~~----~~~l~~l~~L~~L~l~~~~~~~~~~~~~----~-~~~~L~~L 500 (529)
++.+...+ ...+.|++|++++| .+++.. .+.+..+++|++|+|++|++++.+...+ . ....|+.|
T Consensus 353 ~~~g~~~l~~~l~~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l 431 (460)
T d1z7xw1 353 EDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQL 431 (460)
T ss_dssp HHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEE
T ss_pred cCcccchhhhhhhcccCCCCEEECCCC-CCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEE
Confidence 87665544 23567999999999 788753 3456678999999999999988766544 2 33479999
Q ss_pred eecCccCChhHHHHhhc--CCCCCceec
Q 009672 501 TLESCKVTANDIKRLQS--RDLPNLVSF 526 (529)
Q Consensus 501 ~l~~~~~~~~~~~~l~~--~~~~~l~~l 526 (529)
++.++.+.+...+.+.. +..|+|+.+
T Consensus 432 ~l~~~~~~~~~~~~l~~l~~~~~~l~~~ 459 (460)
T d1z7xw1 432 VLYDIYWSEEMEDRLQALEKDKPSLRVI 459 (460)
T ss_dssp ECTTCCCCHHHHHHHHHHHHHCTTSEEE
T ss_pred ECCCCCCCHHHHHHHHHHHHhCCCCEEe
Confidence 99999999876655531 346777765
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=1.3e-20 Score=185.33 Aligned_cols=386 Identities=22% Similarity=0.273 Sum_probs=208.9
Q ss_pred CceeEEEecCcccCchhhhh-ccCCCCCCeEeccCCcccCchhhh----hccCCCCCCEEEcCCCCccchhHHHHHh---
Q 009672 57 SSLLSVDLSGSDVTDSGLIH-LKDCSNLQSLDFNFCIQISDGGLE----HLRGLSNLTSLSFRRNNAITAQGMKAFA--- 128 (529)
Q Consensus 57 ~~l~~l~l~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~----~~~~l~~L~~L~l~~~~~~~~~~~~~~~--- 128 (529)
.+|+.||++++++++..... ++.++++++|+|++| .+++.+.. .+..+++|++|+|++|. +++.....+.
T Consensus 2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~-~i~~~~~~~l~~~L~~~~~L~~LdLs~N~-i~~~~~~~l~~~l 79 (460)
T d1z7xw1 2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQGL 79 (460)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHTT
T ss_pred CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCC-CCCHHHHHHHHHHHhcCCCCCEEECcCCc-CChHHHHHHHHHH
Confidence 46899999999998766544 578889999999988 57765543 45688999999999887 5554444443
Q ss_pred --CCCCCCEEeccCcccccccc----ccccCCCcCcEEeccCCcccCccccccc----c-CCCCCCeEEccCCCCChhHH
Q 009672 129 --GLINLVKLDLERCTRIHGGL----VNLKGLMKLESLNIKWCNCITDSDMKPL----S-GLTNLKSLQISCSKVTDSGI 197 (529)
Q Consensus 129 --~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~l----~-~~~~L~~L~l~~~~~~~~~~ 197 (529)
...+|++|++++|....... ..+..+++|++|++++| .+.+.....+ . ..............+.....
T Consensus 80 ~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N-~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 158 (460)
T d1z7xw1 80 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN-LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC 158 (460)
T ss_dssp CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH
T ss_pred hcCCCCCCEEECCCCCccccccccccchhhccccccccccccc-cchhhhhhhhhhcccccccccccccccccccchhhh
Confidence 23579999999986443332 35677899999999884 3443322222 1 12233444444444333322
Q ss_pred HHhhccCccchhhhhhhhHHHhhhhhhhhcccCCccEEEccCCCCCHHHHHH----hh-cCCCCCeEecCCCcCChhhh-
Q 009672 198 AYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDS----LS-ALGSLFYLNLNRCQLSDDGC- 271 (529)
Q Consensus 198 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----~~-~~~~L~~L~l~~~~~~~~~~- 271 (529)
..+.. .+.....++.++++++......... +. .......+.+..+.......
T Consensus 159 ~~~~~----------------------~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~ 216 (460)
T d1z7xw1 159 EPLAS----------------------VLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR 216 (460)
T ss_dssp HHHHH----------------------HHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHH
T ss_pred ccccc----------------------ccccccccccccccccccccccccccccccccccccccccccccccccchhhh
Confidence 22211 1334477888888888765432222 22 23456677777766543222
Q ss_pred ---HhhhcCCCccEEEccCCCCChHH-----HHhhcCCCCCCEEECCCCCCChhhh----hhhcCCCCCCeEEcCCCccC
Q 009672 272 ---EKFSKIGSLKVLNLGFNEITDEC-----LVHLKGLTNLESLNLDSCGIGDEGL----VNLTGLCNLKCLELSDTQVG 339 (529)
Q Consensus 272 ---~~l~~~~~L~~L~l~~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~ 339 (529)
..+...+.++.+.++++...... .........++.+++++|.+..... ..+...+.++.+++++|.++
T Consensus 217 ~~~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~ 296 (460)
T d1z7xw1 217 DLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG 296 (460)
T ss_dssp HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCH
T ss_pred cccccccccccccccchhhccccccccchhhccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 23345667778887777654321 2223345677777777776553322 22334556666666666655
Q ss_pred hhhhhhc-----cCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHH
Q 009672 340 SSGLRHL-----SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 414 (529)
Q Consensus 340 ~~~~~~~-----~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~ 414 (529)
+.....+ .....|+.++++++.++......++ ..+..+++|++|++++|.+++.+
T Consensus 297 ~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~--------------------~~~~~~~~L~~L~Ls~N~i~~~g 356 (460)
T d1z7xw1 297 DEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFS--------------------SVLAQNRFLLELQISNNRLEDAG 356 (460)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH--------------------HHHHHCSSCCEEECCSSBCHHHH
T ss_pred ccccchhhccccccccccccccccccchhhhhhhhcc--------------------cccccccchhhhheeeecccCcc
Confidence 4333222 1123455555555544433322221 11123344555555555444332
Q ss_pred HHhh-----hcCCCCcEEEccCCCCChhhhhh----ccCCCCCCeEecCCCCCCChhHHHHHh-----CCCCCCeeeccC
Q 009672 415 AAYL-----RNFKNLRSLEICGGGLTDAGVKH----IKDLSSLTLLNLSQNCNLTDKTLELIS-----GLTGLVSLNVSN 480 (529)
Q Consensus 415 ~~~~-----~~~~~L~~L~l~~~~l~~~~~~~----~~~~~~L~~L~l~~~~~l~~~~~~~l~-----~l~~L~~L~l~~ 480 (529)
...+ ...+.|++|++++|.+++.+..+ +..+++|++|+|++| .+++.....+. ....|+.|++.+
T Consensus 357 ~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N-~i~~~g~~~l~~~l~~~~~~L~~l~l~~ 435 (460)
T d1z7xw1 357 VRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNN-CLGDAGILQLVESVRQPGCLLEQLVLYD 435 (460)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSS-SCCHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred cchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCC-cCCHHHHHHHHHHHHhCCCccCEEECCC
Confidence 2221 12344555555555555443322 233455555555555 45443332221 123466666666
Q ss_pred CccChhHH
Q 009672 481 SRITSAGL 488 (529)
Q Consensus 481 ~~~~~~~~ 488 (529)
+.+.....
T Consensus 436 ~~~~~~~~ 443 (460)
T d1z7xw1 436 IYWSEEME 443 (460)
T ss_dssp CCCCHHHH
T ss_pred CCCCHHHH
Confidence 66554444
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.86 E-value=1.4e-22 Score=188.35 Aligned_cols=250 Identities=18% Similarity=0.120 Sum_probs=157.9
Q ss_pred CceeEEEecCcccCch--hhhhccCCCCCCeEeccCCcccCchhhhhccCCCCCCEEEcCCCCccchhHHHHHhCCCCCC
Q 009672 57 SSLLSVDLSGSDVTDS--GLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134 (529)
Q Consensus 57 ~~l~~l~l~~~~~~~~--~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 134 (529)
.+|+.|+|+++++++. .+..++++++|++|+|++|+.+.+..+..|+++++|++|++++|. +....+..+..+.+|+
T Consensus 50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~-l~~~~~~~~~~~~~L~ 128 (313)
T d1ogqa_ 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN-VSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEEC-CEEECCGGGGGCTTCC
T ss_pred EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhcccc-ccccccccccchhhhc
Confidence 3699999999988763 567788999999999987556766667788889999999998887 4556666677888888
Q ss_pred EEeccCccccccccccccCCCcCcEEeccCCcccCccccccccCCCCC-CeEEccCCCCChhHHHHhhccCccchhhhhh
Q 009672 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL-KSLQISCSKVTDSGIAYLKGLSISSVIFILC 213 (529)
Q Consensus 135 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L-~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~ 213 (529)
+++++.|......+..+..++.|+.+++++ +.+.+..+..+..+..+ +.++++.|+++...+..+..+
T Consensus 129 ~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~-n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l---------- 197 (313)
T d1ogqa_ 129 TLDFSYNALSGTLPPSISSLPNLVGITFDG-NRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL---------- 197 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCS-SCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC----------
T ss_pred ccccccccccccCchhhccCcccceeeccc-ccccccccccccccccccccccccccccccccccccccc----------
Confidence 888888766655666777778888888877 44555555666655554 667777766655433333222
Q ss_pred hhHHHhhhhhhhhcccCCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChH
Q 009672 214 SMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293 (529)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 293 (529)
....+++..+......+..+..+++++.+++.++.+.... ..+..+++|+.|++++|++.+.
T Consensus 198 -----------------~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~-~~~~~~~~L~~L~Ls~N~l~g~ 259 (313)
T d1ogqa_ 198 -----------------NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGT 259 (313)
T ss_dssp -----------------CCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBG-GGCCCCTTCCEEECCSSCCEEC
T ss_pred -----------------cccccccccccccccccccccccccccccccccccccccc-cccccccccccccCccCeeccc
Confidence 2334666555544444444555566666666666554432 2344455566666666555554
Q ss_pred HHHhhcCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCc
Q 009672 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 337 (529)
Q Consensus 294 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 337 (529)
.|..+..+++|++|++++|.++...+ .++.+++|+.+++.+|+
T Consensus 260 iP~~l~~L~~L~~L~Ls~N~l~g~iP-~~~~L~~L~~l~l~~N~ 302 (313)
T d1ogqa_ 260 LPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNK 302 (313)
T ss_dssp CCGGGGGCTTCCEEECCSSEEEEECC-CSTTGGGSCGGGTCSSS
T ss_pred CChHHhCCCCCCEEECcCCcccccCC-CcccCCCCCHHHhCCCc
Confidence 55555555555555555554443222 22334444555554443
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.85 E-value=6.1e-23 Score=190.80 Aligned_cols=247 Identities=19% Similarity=0.173 Sum_probs=143.5
Q ss_pred CCeEecCCCcCCh--hhhHhhhcCCCccEEEccC-CCCChHHHHhhcCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEE
Q 009672 256 LFYLNLNRCQLSD--DGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 332 (529)
Q Consensus 256 L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 332 (529)
++.|+++++.+.. ..|..+..+++|++|++++ |.+.+..|..+..+++|++|++++|.+....+..+..+++|+.++
T Consensus 52 v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~ 131 (313)
T d1ogqa_ 52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD 131 (313)
T ss_dssp EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEE
T ss_pred EEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccc
Confidence 4444444444332 1234444555555555543 444444444555555555555555555444444455555555555
Q ss_pred cCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCC-cEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCC
Q 009672 333 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL-KSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 411 (529)
Q Consensus 333 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L-~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~ 411 (529)
+++|.+....+..+..++.++.+++++|.+....+..+..+..+ +.+.+++|.+....+..+..+. ...+++..+...
T Consensus 132 l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~-~~~l~l~~~~~~ 210 (313)
T d1ogqa_ 132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLE 210 (313)
T ss_dssp CCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEE
T ss_pred cccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc
Confidence 55555444444455556666666666665554444444444443 5666666666554444444443 335666666655
Q ss_pred hHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccChhHHHhc
Q 009672 412 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 491 (529)
Q Consensus 412 ~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 491 (529)
...+..+..+++++.++++++.+.... ..+..+++|++|++++| +++..+|..++++++|+.|+|++|.+++..| .+
T Consensus 211 ~~~~~~~~~~~~l~~l~~~~~~l~~~~-~~~~~~~~L~~L~Ls~N-~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP-~~ 287 (313)
T d1ogqa_ 211 GDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNN-RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QG 287 (313)
T ss_dssp ECCGGGCCTTSCCSEEECCSSEECCBG-GGCCCCTTCCEEECCSS-CCEECCCGGGGGCTTCCEEECCSSEEEEECC-CS
T ss_pred ccccccccccccccccccccccccccc-cccccccccccccCccC-eecccCChHHhCCCCCCEEECcCCcccccCC-Cc
Confidence 555556666777777777777766543 34666677777777777 6776667777777777777777777775444 34
Q ss_pred cCCCCCcEEeecCcc
Q 009672 492 KPLKNLRSLTLESCK 506 (529)
Q Consensus 492 ~~~~~L~~L~l~~~~ 506 (529)
..+++|+.+++++|+
T Consensus 288 ~~L~~L~~l~l~~N~ 302 (313)
T d1ogqa_ 288 GNLQRFDVSAYANNK 302 (313)
T ss_dssp TTGGGSCGGGTCSSS
T ss_pred ccCCCCCHHHhCCCc
Confidence 566777777777775
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.84 E-value=6.4e-21 Score=176.33 Aligned_cols=252 Identities=21% Similarity=0.224 Sum_probs=134.8
Q ss_pred CCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEEC
Q 009672 230 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 309 (529)
Q Consensus 230 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 309 (529)
+++++|++++|.+....+.+|.++++|+.|+++++.+....+..+..++.|++|++++|++... +. ...+.++.|.+
T Consensus 31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l-~~--~~~~~l~~L~~ 107 (305)
T d1xkua_ 31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL-PE--KMPKTLQELRV 107 (305)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBC-CS--SCCTTCCEEEC
T ss_pred CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcC-cc--chhhhhhhhhc
Confidence 4566666666666654444566666666666666666655555566666666666666655431 11 12345556666
Q ss_pred CCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHH
Q 009672 310 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 389 (529)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 389 (529)
.++.+.......+.....+..+....+...... .....+..+++|+.+++.++.+...
T Consensus 108 ~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~----------------------~~~~~~~~l~~L~~l~l~~n~l~~l 165 (305)
T d1xkua_ 108 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSG----------------------IENGAFQGMKKLSYIRIADTNITTI 165 (305)
T ss_dssp CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGG----------------------BCTTGGGGCTTCCEEECCSSCCCSC
T ss_pred cccchhhhhhhhhhccccccccccccccccccC----------------------CCccccccccccCccccccCCcccc
Confidence 555555444444444455555555444322111 1112233344444555544444332
Q ss_pred HHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhC
Q 009672 390 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 469 (529)
Q Consensus 390 ~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~ 469 (529)
+. ..+++|+.|++.+|......+..+.+++.+++|++++|.+....+..+.++++|++|++++| .++.. |..+..
T Consensus 166 ~~---~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N-~L~~l-p~~l~~ 240 (305)
T d1xkua_ 166 PQ---GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLVKV-PGGLAD 240 (305)
T ss_dssp CS---SCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS-CCSSC-CTTTTT
T ss_pred Cc---ccCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeecccc-ccccc-cccccc
Confidence 10 12345555555555555544455555566666666666665555555555666666666666 55543 345556
Q ss_pred CCCCCeeeccCCccChhHHHhc------cCCCCCcEEeecCccCChhH
Q 009672 470 LTGLVSLNVSNSRITSAGLRHL------KPLKNLRSLTLESCKVTAND 511 (529)
Q Consensus 470 l~~L~~L~l~~~~~~~~~~~~~------~~~~~L~~L~l~~~~~~~~~ 511 (529)
+++|+.|++++|+++......| ...++|+.|++++|+++...
T Consensus 241 l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~ 288 (305)
T d1xkua_ 241 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE 288 (305)
T ss_dssp CSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGG
T ss_pred ccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCccCc
Confidence 6666666666666555433222 33456777777777666543
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.84 E-value=9.6e-21 Score=175.14 Aligned_cols=243 Identities=19% Similarity=0.191 Sum_probs=175.8
Q ss_pred CCccEEEccCCCCChHHHHhhcCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEec
Q 009672 278 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 357 (529)
Q Consensus 278 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 357 (529)
+++++|++++|+++...+..|..+++|++|++.++.+....+..|..+++|+.|++++|.+..... ...+.++.+++
T Consensus 31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~---~~~~~l~~L~~ 107 (305)
T d1xkua_ 31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPE---KMPKTLQELRV 107 (305)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCS---SCCTTCCEEEC
T ss_pred CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCcc---chhhhhhhhhc
Confidence 355666666666554333345666666666666666655555556666677777777666554322 12346777777
Q ss_pred cCCCCChhhhhhhcCCCCCcEEECCCCCCCHH--HHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCC
Q 009672 358 SFTGISDGSLRKLAGLSSLKSLNLDARQITDT--GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 435 (529)
Q Consensus 358 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~ 435 (529)
..+.+.......+.....+..+....+..... ....+..+++|+.+++.+|.+..... ..+++|++|++++|...
T Consensus 108 ~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~---~~~~~L~~L~l~~n~~~ 184 (305)
T d1xkua_ 108 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ---GLPPSLTELHLDGNKIT 184 (305)
T ss_dssp CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCS---SCCTTCSEEECTTSCCC
T ss_pred cccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCc---ccCCccCEEECCCCcCC
Confidence 77777766666666677788888877654432 23456788999999999998876532 23689999999999998
Q ss_pred hhhhhhccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccChhHHHhccCCCCCcEEeecCccCChhHHHHh
Q 009672 436 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 515 (529)
Q Consensus 436 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 515 (529)
...+..+.+++.+++|++++| .++...+..+.++++|++|++++|.+... +.++..+++|+.|++++|+++..+...+
T Consensus 185 ~~~~~~~~~~~~l~~L~~s~n-~l~~~~~~~~~~l~~L~~L~L~~N~L~~l-p~~l~~l~~L~~L~Ls~N~i~~i~~~~f 262 (305)
T d1xkua_ 185 KVDAASLKGLNNLAKLGLSFN-SISAVDNGSLANTPHLRELHLNNNKLVKV-PGGLADHKYIQVVYLHNNNISAIGSNDF 262 (305)
T ss_dssp EECTGGGTTCTTCCEEECCSS-CCCEECTTTGGGSTTCCEEECCSSCCSSC-CTTTTTCSSCCEEECCSSCCCCCCTTSS
T ss_pred CCChhHhhccccccccccccc-cccccccccccccccceeeeccccccccc-ccccccccCCCEEECCCCccCccChhhc
Confidence 888888999999999999999 89988888899999999999999999865 4578899999999999999987544433
Q ss_pred hc----CCCCCceecCC
Q 009672 516 QS----RDLPNLVSFRP 528 (529)
Q Consensus 516 ~~----~~~~~l~~l~~ 528 (529)
.. ...++|+.+.+
T Consensus 263 ~~~~~~~~~~~L~~L~L 279 (305)
T d1xkua_ 263 CPPGYNTKKASYSGVSL 279 (305)
T ss_dssp SCSSCCTTSCCCSEEEC
T ss_pred cCcchhcccCCCCEEEC
Confidence 21 23456665544
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=1.3e-20 Score=172.02 Aligned_cols=206 Identities=25% Similarity=0.300 Sum_probs=161.5
Q ss_pred CCccEEEccCCCCChHHHHhhcCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCC-CccChhhhhhccCCCCCCeEe
Q 009672 278 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESIN 356 (529)
Q Consensus 278 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~ 356 (529)
+++++|++++|.++...+..+..+++|++|+++++.+.......+..++.++.+.+.. +.++...+..++++++|++++
T Consensus 32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~ 111 (284)
T d1ozna_ 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (284)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEe
Confidence 4678888888888765556688888888888888888777677777778888877653 455555566677888888888
Q ss_pred ccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCCh
Q 009672 357 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 436 (529)
Q Consensus 357 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~ 436 (529)
+++|.+.......+..+.+|+.+++.+|.++..+...++.+++|+.|++++|.+....+..+.++++|+.+++++|.+++
T Consensus 112 l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~ 191 (284)
T d1ozna_ 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191 (284)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred cCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccc
Confidence 88887776666667777888888888888877656667777888888888888887777777788888888888888887
Q ss_pred hhhhhccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccC
Q 009672 437 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484 (529)
Q Consensus 437 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 484 (529)
..+..|..+++|++|++++| .+....+..+..+++|+.|++++|++.
T Consensus 192 i~~~~f~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~L~~L~l~~N~l~ 238 (284)
T d1ozna_ 192 VHPHAFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNPWV 238 (284)
T ss_dssp ECTTTTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred cChhHhhhhhhccccccccc-ccccccccccccccccCEEEecCCCCC
Confidence 77777888888888888888 777777778888888888888888765
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=6.9e-21 Score=173.95 Aligned_cols=203 Identities=21% Similarity=0.254 Sum_probs=124.1
Q ss_pred CCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEECCC-CCCChhhhhhhcCCCCCCeEEc
Q 009672 255 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS-CGIGDEGLVNLTGLCNLKCLEL 333 (529)
Q Consensus 255 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l 333 (529)
.+++|++++|+++...+..+..+++|++|+++++.+....+..+..++.++.+.+.. +.+....+..+..+++|+.|++
T Consensus 33 ~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l 112 (284)
T d1ozna_ 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL 112 (284)
T ss_dssp TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEec
Confidence 345555555555444444455555555555555555443333444455555554432 2344444445556666666666
Q ss_pred CCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChH
Q 009672 334 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 413 (529)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~ 413 (529)
++|.+.......+...++|+.+++++|.++......++.+++|+.|++++|.+....+..+..+++|+.+++.+|++++.
T Consensus 113 ~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i 192 (284)
T d1ozna_ 113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV 192 (284)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred CCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhcccccc
Confidence 66655444444455556666666666666665555666666777777777777665555666677777777777777766
Q ss_pred HHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCC
Q 009672 414 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 457 (529)
Q Consensus 414 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~ 457 (529)
.+..|.++++|++|++++|.+....+..++.+++|++|++++|+
T Consensus 193 ~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~ 236 (284)
T d1ozna_ 193 HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236 (284)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred ChhHhhhhhhcccccccccccccccccccccccccCEEEecCCC
Confidence 66667777777777777777777666667777777777777763
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=8.3e-19 Score=159.34 Aligned_cols=247 Identities=22% Similarity=0.253 Sum_probs=148.4
Q ss_pred CeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEECCCCCCChhhh-hhhcCCCCCCeEEcCC
Q 009672 257 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL-VNLTGLCNLKCLELSD 335 (529)
Q Consensus 257 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~ 335 (529)
+.+|+++..+.......+.. ..+..+.++....... ........+|++|+++++.+..... ..+..+++|++|++.+
T Consensus 3 ~~lDLs~~~l~~~~l~~l~~-~~~~~lrl~~~~~~~~-~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~ 80 (284)
T d2astb2 3 QTLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQP-LAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG 80 (284)
T ss_dssp SEEECTTCBCCHHHHHHHHH-TTCSEEECTTCEECSC-CCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTT
T ss_pred CEEECCCCCCCchHHHHHHh-ccceEeeccccccccc-hhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccc
Confidence 46778777665443333322 2344555554433221 1112244577888887776554332 3356677788888877
Q ss_pred CccChhhhhhccCCCCCCeEeccCC-CCChhhhhhh-cCCCCCcEEECCCC-CCCHHHHH-HHh-cCCCCCEEecCCC--
Q 009672 336 TQVGSSGLRHLSGLTNLESINLSFT-GISDGSLRKL-AGLSSLKSLNLDAR-QITDTGLA-ALT-SLTGLTHLDLFGA-- 408 (529)
Q Consensus 336 ~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l-~~~~~L~~L~l~~~-~~~~~~~~-~l~-~~~~L~~L~l~~~-- 408 (529)
+.+.+.....++.+++|+.|++++| .+++.....+ ..+++|++|+++++ .+++.... .+. .+++|+.|+++++
T Consensus 81 ~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 160 (284)
T d2astb2 81 LRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRK 160 (284)
T ss_dssp CBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGG
T ss_pred cCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhccccc
Confidence 7777766666777777888887775 5665444333 35677777777774 45543332 232 3567777777765
Q ss_pred CCChHHHHh-hhcCCCCcEEEccCC-CCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccChh
Q 009672 409 RITDSGAAY-LRNFKNLRSLEICGG-GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 486 (529)
Q Consensus 409 ~l~~~~~~~-~~~~~~L~~L~l~~~-~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~ 486 (529)
.+++..... ..++++|++|++++| .+++.....+..+++|++|++++|..+++.....++++++|+.|++++| +.+.
T Consensus 161 ~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~-~~d~ 239 (284)
T d2astb2 161 NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDG 239 (284)
T ss_dssp GSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT
T ss_pred ccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC-CCHH
Confidence 355443333 356777777777775 4666666677777777777777776677766666777777777777777 4433
Q ss_pred HHHhc-cCCCCCcEEeecCccCCh
Q 009672 487 GLRHL-KPLKNLRSLTLESCKVTA 509 (529)
Q Consensus 487 ~~~~~-~~~~~L~~L~l~~~~~~~ 509 (529)
....+ ..+|+|+ +..+.++.
T Consensus 240 ~l~~l~~~lp~L~---i~~~~ls~ 260 (284)
T d2astb2 240 TLQLLKEALPHLQ---INCSHFTT 260 (284)
T ss_dssp CHHHHHHHSTTSE---ESCCCSCC
T ss_pred HHHHHHHhCcccc---ccCccCCC
Confidence 33322 3455544 44455543
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=3.2e-17 Score=148.67 Aligned_cols=252 Identities=19% Similarity=0.239 Sum_probs=166.5
Q ss_pred cEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHH-HhhcCCCCCCEEECCC
Q 009672 233 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL-VHLKGLTNLESLNLDS 311 (529)
Q Consensus 233 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~ 311 (529)
+.+|+++..+.......+.. ..+..+.+......... .......+|++|+++++.+..... ..+..+++|++|.+.+
T Consensus 3 ~~lDLs~~~l~~~~l~~l~~-~~~~~lrl~~~~~~~~~-~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~ 80 (284)
T d2astb2 3 QTLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPL-AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG 80 (284)
T ss_dssp SEEECTTCBCCHHHHHHHHH-TTCSEEECTTCEECSCC-CSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTT
T ss_pred CEEECCCCCCCchHHHHHHh-ccceEeeccccccccch-hhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccc
Confidence 46788877665433333222 23455565544332211 122234578888888887765543 3467788899998888
Q ss_pred CCCChhhhhhhcCCCCCCeEEcCCC-ccChhhhhh-ccCCCCCCeEeccCC-CCChhhhh-hhc-CCCCCcEEECCCC--
Q 009672 312 CGIGDEGLVNLTGLCNLKCLELSDT-QVGSSGLRH-LSGLTNLESINLSFT-GISDGSLR-KLA-GLSSLKSLNLDAR-- 384 (529)
Q Consensus 312 ~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~-~~~~~~L~~L~l~~~-~~~~~~~~-~l~-~~~~L~~L~l~~~-- 384 (529)
+.+.+.....++.+++|+.|++++| .+++..... ...+++|++|++++| .+++.... .+. .+++|+.|+++++
T Consensus 81 ~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 160 (284)
T d2astb2 81 LRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRK 160 (284)
T ss_dssp CBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGG
T ss_pred cCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhccccc
Confidence 8887777777888888999998886 566554433 356788889988886 45544332 232 4578888888874
Q ss_pred CCCHHHHHHH-hcCCCCCEEecCCC-CCChHHHHhhhcCCCCcEEEccCC-CCChhhhhhccCCCCCCeEecCCCCCCCh
Q 009672 385 QITDTGLAAL-TSLTGLTHLDLFGA-RITDSGAAYLRNFKNLRSLEICGG-GLTDAGVKHIKDLSSLTLLNLSQNCNLTD 461 (529)
Q Consensus 385 ~~~~~~~~~l-~~~~~L~~L~l~~~-~l~~~~~~~~~~~~~L~~L~l~~~-~l~~~~~~~~~~~~~L~~L~l~~~~~l~~ 461 (529)
.+++.....+ .++++|++|++++| .+++.....+.++++|++|++++| .+++.+...++++++|+.|++++| +++
T Consensus 161 ~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~--~~d 238 (284)
T d2astb2 161 NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI--VPD 238 (284)
T ss_dssp GSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS--SCT
T ss_pred ccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC--CCH
Confidence 4565544444 47888999988886 577777777788888999999885 677777777888888999988887 444
Q ss_pred hH-HHHHhCCCCCCeeeccCCccChhHHHhc
Q 009672 462 KT-LELISGLTGLVSLNVSNSRITSAGLRHL 491 (529)
Q Consensus 462 ~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 491 (529)
.. ......+|+|+ +..++++......+
T Consensus 239 ~~l~~l~~~lp~L~---i~~~~ls~~~~~~~ 266 (284)
T d2astb2 239 GTLQLLKEALPHLQ---INCSHFTTIARPTI 266 (284)
T ss_dssp TCHHHHHHHSTTSE---ESCCCSCCTTCSSC
T ss_pred HHHHHHHHhCcccc---ccCccCCCCCCCcc
Confidence 33 33334566654 45566665444333
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=1.1e-18 Score=157.18 Aligned_cols=199 Identities=20% Similarity=0.148 Sum_probs=125.4
Q ss_pred CCccEEEccCCCCChHHHHhhcCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEec
Q 009672 278 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 357 (529)
Q Consensus 278 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 357 (529)
..+.+++-+++.++. .|..+ .++++.|++++|.++......|..+++|+.|++++|.++... .++.+++|+.|++
T Consensus 10 ~~~~~v~C~~~~L~~-iP~~l--p~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~--~~~~l~~L~~L~L 84 (266)
T d1p9ag_ 10 ASHLEVNCDKRNLTA-LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ--VDGTLPVLGTLDL 84 (266)
T ss_dssp TTCCEEECTTSCCSS-CCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE--CCSCCTTCCEEEC
T ss_pred CCCeEEEccCCCCCe-eCcCc--CcCCCEEECcCCcCCCcCHHHhhccccccccccccccccccc--ccccccccccccc
Confidence 344556666666653 33322 146777888877777666666777777888887777766432 2456677777777
Q ss_pred cCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChh
Q 009672 358 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 437 (529)
Q Consensus 358 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~ 437 (529)
++|.+... +..+..+++|+.|+++++.+.......+..+.+++.+++.+|.+....+..+..+++|+.+++++|+++..
T Consensus 85 s~N~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~ 163 (266)
T d1p9ag_ 85 SHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL 163 (266)
T ss_dssp CSSCCSSC-CCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred cccccccc-ccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccccccccc
Confidence 77766543 33455666777777777666554444455666666777766666666555566666666677766666666
Q ss_pred hhhhccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccC
Q 009672 438 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484 (529)
Q Consensus 438 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 484 (529)
.+..+..+++|++|++++| .++. +|..+..+++|+.|+|++|++.
T Consensus 164 ~~~~~~~l~~L~~L~Ls~N-~L~~-lp~~~~~~~~L~~L~L~~Np~~ 208 (266)
T d1p9ag_ 164 PAGLLNGLENLDTLLLQEN-SLYT-IPKGFFGSHLLPFAFLHGNPWL 208 (266)
T ss_dssp CTTTTTTCTTCCEEECCSS-CCCC-CCTTTTTTCCCSEEECCSCCBC
T ss_pred CccccccccccceeecccC-CCcc-cChhHCCCCCCCEEEecCCCCC
Confidence 5555666666666666666 5553 3444455666666666666654
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=2.3e-18 Score=155.08 Aligned_cols=199 Identities=24% Similarity=0.225 Sum_probs=163.5
Q ss_pred cCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEECCCCCCChhhhhhhcCCCCCCeE
Q 009672 252 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 331 (529)
Q Consensus 252 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 331 (529)
+...+..++-+++.++.. |..+. +++++|++++|.+....+..|..+++|++|++++|.++... .++.+++|+.|
T Consensus 8 ~~~~~~~v~C~~~~L~~i-P~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~--~~~~l~~L~~L 82 (266)
T d1p9ag_ 8 KVASHLEVNCDKRNLTAL-PPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ--VDGTLPVLGTL 82 (266)
T ss_dssp CSTTCCEEECTTSCCSSC-CSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE--CCSCCTTCCEE
T ss_pred ccCCCeEEEccCCCCCee-CcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccccc--ccccccccccc
Confidence 345666778888777753 33332 57999999999998766677889999999999999887543 45678999999
Q ss_pred EcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCC
Q 009672 332 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 411 (529)
Q Consensus 332 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~ 411 (529)
++++|.+... +..+..+++|+.++++++.+.......+..+.+++.+.+.+|.+....+..+..+++++.+++++|+++
T Consensus 83 ~Ls~N~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~ 161 (266)
T d1p9ag_ 83 DLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161 (266)
T ss_dssp ECCSSCCSSC-CCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred cccccccccc-ccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccccccc
Confidence 9999988754 345677899999999999888777777788899999999999998876667778899999999999999
Q ss_pred hHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCC
Q 009672 412 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 457 (529)
Q Consensus 412 ~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~ 457 (529)
...+..+..+++|++|++++|.++.. +..+..+++|+.|++++||
T Consensus 162 ~~~~~~~~~l~~L~~L~Ls~N~L~~l-p~~~~~~~~L~~L~L~~Np 206 (266)
T d1p9ag_ 162 ELPAGLLNGLENLDTLLLQENSLYTI-PKGFFGSHLLPFAFLHGNP 206 (266)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCCCSEEECCSCC
T ss_pred ccCccccccccccceeecccCCCccc-ChhHCCCCCCCEEEecCCC
Confidence 88888888999999999999999854 5566678999999999995
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.69 E-value=1.5e-16 Score=139.48 Aligned_cols=187 Identities=30% Similarity=0.398 Sum_probs=108.7
Q ss_pred CCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEE
Q 009672 301 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 380 (529)
Q Consensus 301 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 380 (529)
+.+|+.|.+.++.+... ..+..+++|+.|++++|.+.... .+..+++++.+++++|.+++. ..++.+++|+.+.
T Consensus 40 l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~~i--~~l~~l~~L~~l~ 113 (227)
T d1h6ua2 40 LDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLKNV--SAIAGLQSIKTLD 113 (227)
T ss_dssp HHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEE
T ss_pred cCCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeeccc--ccccccccccccccccccccc--ccccccccccccc
Confidence 34455555555544432 23444555555555555544332 245555555565555555432 2345556666666
Q ss_pred CCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCC
Q 009672 381 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 460 (529)
Q Consensus 381 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~ 460 (529)
++++..... ..+...+.++.+.+.++.+.... .+.++++|++|++++|.+.+.. .++++++|++|++++| .++
T Consensus 114 l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n-~l~ 186 (227)
T d1h6ua2 114 LTSTQITDV--TPLAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDN-KIS 186 (227)
T ss_dssp CTTSCCCCC--GGGTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSS-CCC
T ss_pred ccccccccc--chhccccchhhhhchhhhhchhh--hhccccccccccccccccccch--hhcccccceecccCCC-ccC
Confidence 666555442 23445566666666666555432 2456677777777777665432 3566777777777777 666
Q ss_pred hhHHHHHhCCCCCCeeeccCCccChhHHHhccCCCCCcEEeecC
Q 009672 461 DKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 504 (529)
Q Consensus 461 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 504 (529)
+.. .++++++|+.|++++|++++.. .++.+++|+.|++++
T Consensus 187 ~l~--~l~~l~~L~~L~Ls~N~lt~i~--~l~~l~~L~~L~lsn 226 (227)
T d1h6ua2 187 DIS--PLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTN 226 (227)
T ss_dssp CCG--GGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEE
T ss_pred CCh--hhcCCCCCCEEECcCCcCCCCc--ccccCCCCCEEEeeC
Confidence 543 2667777777777777777643 366777788877753
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.67 E-value=2.5e-15 Score=140.69 Aligned_cols=250 Identities=17% Similarity=0.211 Sum_probs=140.8
Q ss_pred HhhcCCCCCeEecCCCcCChhhhHhh----hcCCCccEEEccCCCCCh---H-------HHHhhcCCCCCCEEECCCCCC
Q 009672 249 SLSALGSLFYLNLNRCQLSDDGCEKF----SKIGSLKVLNLGFNEITD---E-------CLVHLKGLTNLESLNLDSCGI 314 (529)
Q Consensus 249 ~~~~~~~L~~L~l~~~~~~~~~~~~l----~~~~~L~~L~l~~~~~~~---~-------~~~~~~~~~~L~~L~l~~~~~ 314 (529)
.+.....|+.|++++|.+.......+ ...+.|+.++++++.... . ....+..+++|+.|++++|.+
T Consensus 26 ~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i 105 (344)
T d2ca6a1 26 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF 105 (344)
T ss_dssp HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred HHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccc
Confidence 34455667777777766655433332 334566666665443210 0 112233345555555555544
Q ss_pred Chhhhh----hhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHH
Q 009672 315 GDEGLV----NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 390 (529)
Q Consensus 315 ~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 390 (529)
+..... .+...++|+.|++++|.++......++.. +..+ .........+.|+.+.++++.+....
T Consensus 106 ~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~--l~~~---------~~~~~~~~~~~L~~l~l~~n~i~~~~ 174 (344)
T d2ca6a1 106 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARA--LQEL---------AVNKKAKNAPPLRSIICGRNRLENGS 174 (344)
T ss_dssp CTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHH--HHHH---------HHHHHHHTCCCCCEEECCSSCCTGGG
T ss_pred ccccccchhhhhcccccchheeccccccccccccccccc--cccc---------ccccccccCcccceeecccccccccc
Confidence 332211 12233444444444444332221111000 0000 00001124567778888777776543
Q ss_pred H----HHHhcCCCCCEEecCCCCCChHHH-----HhhhcCCCCcEEEccCCCCChhhhh----hccCCCCCCeEecCCCC
Q 009672 391 L----AALTSLTGLTHLDLFGARITDSGA-----AYLRNFKNLRSLEICGGGLTDAGVK----HIKDLSSLTLLNLSQNC 457 (529)
Q Consensus 391 ~----~~l~~~~~L~~L~l~~~~l~~~~~-----~~~~~~~~L~~L~l~~~~l~~~~~~----~~~~~~~L~~L~l~~~~ 457 (529)
. ..+..+++|+.+++++|.++..+. ..+..+++|+.|++++|.++..+.. .+..+++|++|++++|
T Consensus 175 ~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n- 253 (344)
T d2ca6a1 175 MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC- 253 (344)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTC-
T ss_pred cccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcC-
Confidence 3 234567788888888888776432 2346678888888888888766543 3456788888888888
Q ss_pred CCChhHHHHH----hC--CCCCCeeeccCCccChhHHHhc-----cCCCCCcEEeecCccCChh
Q 009672 458 NLTDKTLELI----SG--LTGLVSLNVSNSRITSAGLRHL-----KPLKNLRSLTLESCKVTAN 510 (529)
Q Consensus 458 ~l~~~~~~~l----~~--l~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~ 510 (529)
.+++.....+ .. .+.|+.|++++|.+...+...+ ..+++|+.|++++|++...
T Consensus 254 ~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~~ 317 (344)
T d2ca6a1 254 LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 317 (344)
T ss_dssp CCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred ccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCCc
Confidence 6777644433 32 4678899999998877554332 2567899999999988653
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.66 E-value=7e-15 Score=137.60 Aligned_cols=249 Identities=19% Similarity=0.210 Sum_probs=127.4
Q ss_pred cccCCCCCCeEEccCCCCChhHHHHhhccCccchhhhhhhhHHHhhhhhhhhcccCCccEEEccCCCCCH----------
Q 009672 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTA---------- 244 (529)
Q Consensus 175 ~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---------- 244 (529)
.+.+...|++|++++|.+.+.+...+... +...+.|+.++++++....
T Consensus 26 ~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~----------------------l~~~~~L~~l~l~~~~~~~~~~~~~~~~~ 83 (344)
T d2ca6a1 26 VLLEDDSVKEIVLSGNTIGTEAARWLSEN----------------------IASKKDLEIAEFSDIFTGRVKDEIPEALR 83 (344)
T ss_dssp HHHHCSCCCEEECTTSEECHHHHHHHHHT----------------------TTTCTTCCEEECCSCCTTSCGGGSHHHHH
T ss_pred HHhhCCCCCEEECcCCcCCHHHHHHHHHH----------------------HHhCCCCCEEECCCCcccccccccchHHH
Confidence 34455667777777776666655555433 3444667777766553211
Q ss_pred HHHHHhhcCCCCCeEecCCCcCChhhh----HhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEECCCCCCChhhhh
Q 009672 245 ACLDSLSALGSLFYLNLNRCQLSDDGC----EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 320 (529)
Q Consensus 245 ~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 320 (529)
.....+..+++|+.|++++|.+..... ..+...++|+.|++++|.+.......+... +.. .....
T Consensus 84 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~--l~~---------~~~~~ 152 (344)
T d2ca6a1 84 LLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARA--LQE---------LAVNK 152 (344)
T ss_dssp HHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHH--HHH---------HHHHH
T ss_pred HHHHHHhhCCCcccccccccccccccccchhhhhcccccchheeccccccccccccccccc--ccc---------ccccc
Confidence 112334455666666666666554322 223345666666666665543221111000 000 00000
Q ss_pred hhcCCCCCCeEEcCCCccChhhh----hhccCCCCCCeEeccCCCCChhh-----hhhhcCCCCCcEEECCCCCCCHHHH
Q 009672 321 NLTGLCNLKCLELSDTQVGSSGL----RHLSGLTNLESINLSFTGISDGS-----LRKLAGLSSLKSLNLDARQITDTGL 391 (529)
Q Consensus 321 ~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~-----~~~l~~~~~L~~L~l~~~~~~~~~~ 391 (529)
.....+.|+.+.++++.++.... ..+..++.++.++++.|.+.+.. ...+..+++|+.|++++|.++..+.
T Consensus 153 ~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~ 232 (344)
T d2ca6a1 153 KAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGS 232 (344)
T ss_dssp HHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHH
T ss_pred ccccCcccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccc
Confidence 11223444455554444433222 12234455556666555555432 1224455667777777666655433
Q ss_pred ----HHHhcCCCCCEEecCCCCCChHHHHhh----h--cCCCCcEEEccCCCCChhhhhhcc-----CCCCCCeEecCCC
Q 009672 392 ----AALTSLTGLTHLDLFGARITDSGAAYL----R--NFKNLRSLEICGGGLTDAGVKHIK-----DLSSLTLLNLSQN 456 (529)
Q Consensus 392 ----~~l~~~~~L~~L~l~~~~l~~~~~~~~----~--~~~~L~~L~l~~~~l~~~~~~~~~-----~~~~L~~L~l~~~ 456 (529)
..+..+++|++|++++|.+++.+...+ . ..+.|++|++++|+++..+...+. ++++|++|++++|
T Consensus 233 ~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N 312 (344)
T d2ca6a1 233 SALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN 312 (344)
T ss_dssp HHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred ccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCC
Confidence 233466677777777777766544333 2 235677777777777665544332 4567777777777
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.66 E-value=7.2e-16 Score=135.08 Aligned_cols=188 Identities=28% Similarity=0.386 Sum_probs=95.1
Q ss_pred hcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEECCCCCCChhhhhhhcCCCCCCe
Q 009672 251 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 330 (529)
Q Consensus 251 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 330 (529)
..+.+|+.|++.+|.+... +.+..+++|++|++++|.+.+.. .+..+++++.+.+.++.++.. ..++.+++|+.
T Consensus 38 ~~l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~~i--~~l~~l~~L~~ 111 (227)
T d1h6ua2 38 ADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLKNV--SAIAGLQSIKT 111 (227)
T ss_dssp HHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCSCC--GGGTTCTTCCE
T ss_pred HHcCCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeeccc--ccccccccccccccccccccc--ccccccccccc
Confidence 3445666666666665542 23555666666666666554322 245555666666655544432 23444555555
Q ss_pred EEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCC
Q 009672 331 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 410 (529)
Q Consensus 331 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l 410 (529)
+.++++..... ..+...+.++.+.+.++.+... ..+..+++|+.|++.+|.+
T Consensus 112 l~l~~~~~~~~--------------------------~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~ 163 (227)
T d1h6ua2 112 LDLTSTQITDV--------------------------TPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQV 163 (227)
T ss_dssp EECTTSCCCCC--------------------------GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCC
T ss_pred ccccccccccc--------------------------chhccccchhhhhchhhhhchh--hhhcccccccccccccccc
Confidence 55554433222 1122334444455444444332 1234445555555555554
Q ss_pred ChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeeecc
Q 009672 411 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 479 (529)
Q Consensus 411 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~ 479 (529)
.... .+.++++|++|++++|.+++. ..+.++++|++|++++| .+++..+ +.++++|+.|+++
T Consensus 164 ~~~~--~l~~l~~L~~L~Ls~n~l~~l--~~l~~l~~L~~L~Ls~N-~lt~i~~--l~~l~~L~~L~ls 225 (227)
T d1h6ua2 164 SDLT--PLANLSKLTTLKADDNKISDI--SPLASLPNLIEVHLKNN-QISDVSP--LANTSNLFIVTLT 225 (227)
T ss_dssp CCCG--GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECTTS-CCCBCGG--GTTCTTCCEEEEE
T ss_pred ccch--hhcccccceecccCCCccCCC--hhhcCCCCCCEEECcCC-cCCCCcc--cccCCCCCEEEee
Confidence 4332 244555666666666555543 22455566666666666 5555432 5556666666654
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.59 E-value=9.7e-15 Score=125.73 Aligned_cols=144 Identities=33% Similarity=0.390 Sum_probs=71.0
Q ss_pred CCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEE
Q 009672 348 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 427 (529)
Q Consensus 348 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L 427 (529)
.+++|++|++++|.+++.. .++.+++|+.|++++|.++.. ..+..+++|+.+++.+|.+.... .+..++.++.+
T Consensus 66 ~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~l~~~~~~~~~--~l~~l~~l~~l 139 (210)
T d1h6ta2 66 YLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLSLEHNGISDIN--GLVHLPQLESL 139 (210)
T ss_dssp GCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCG--GGGTTCTTCCEEECTTSCCCCCG--GGGGCTTCCEE
T ss_pred hCCCCCEEeCCCccccCcc--ccccCcccccccccccccccc--ccccccccccccccccccccccc--ccccccccccc
Confidence 3444444444444444322 233444555555555544442 13444555555555555444321 24445555555
Q ss_pred EccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccChhHHHhccCCCCCcEEeecC
Q 009672 428 EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 504 (529)
Q Consensus 428 ~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 504 (529)
++++|.+++. ..+..+++|+++++++| .+++..+ +.++++|++|++++|.+++. ..+..+++|+.|++++
T Consensus 140 ~~~~n~l~~~--~~~~~l~~L~~l~l~~n-~l~~i~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 140 YLGNNKITDI--TVLSRLTKLDTLSLEDN-QISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFS 209 (210)
T ss_dssp ECCSSCCCCC--GGGGGCTTCSEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEEEEE
T ss_pred cccccccccc--ccccccccccccccccc-ccccccc--ccCCCCCCEEECCCCCCCCC--hhhcCCCCCCEEEccC
Confidence 5555555432 22344555666666665 4544322 55566666666666665543 2355666666666643
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.58 E-value=1.6e-14 Score=124.40 Aligned_cols=162 Identities=27% Similarity=0.334 Sum_probs=85.0
Q ss_pred CCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECC
Q 009672 303 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 382 (529)
Q Consensus 303 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 382 (529)
++++|++.++.+.... .+..+++|+.|++++|.+++.. .++.+++|+.|++++|.+++.. .+..+++|+.+++.
T Consensus 47 ~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~ 120 (210)
T d1h6ta2 47 SIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKDLS--SLKDLKKLKSLSLE 120 (210)
T ss_dssp TCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCGG--GGTTCTTCCEEECT
T ss_pred CccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccCcc--ccccCccccccccccccccccc--cccccccccccccc
Confidence 3444444444433211 2334445555555555444322 2344555555555555554422 34455556666665
Q ss_pred CCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChh
Q 009672 383 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 462 (529)
Q Consensus 383 ~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 462 (529)
++.+... ..+..+++++.+++.+|.+++.. .+..+++|+.+++++|++++.. .+.++++|++|++++| .+++.
T Consensus 121 ~~~~~~~--~~l~~l~~l~~l~~~~n~l~~~~--~~~~l~~L~~l~l~~n~l~~i~--~l~~l~~L~~L~Ls~N-~i~~l 193 (210)
T d1h6ta2 121 HNGISDI--NGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKN-HISDL 193 (210)
T ss_dssp TSCCCCC--GGGGGCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSS-CCCBC
T ss_pred ccccccc--ccccccccccccccccccccccc--cccccccccccccccccccccc--cccCCCCCCEEECCCC-CCCCC
Confidence 5555442 23455566666666666555432 3445666666666666665432 2556666667777666 56553
Q ss_pred HHHHHhCCCCCCeeecc
Q 009672 463 TLELISGLTGLVSLNVS 479 (529)
Q Consensus 463 ~~~~l~~l~~L~~L~l~ 479 (529)
. .+.++++|+.|+|+
T Consensus 194 ~--~l~~l~~L~~L~Ls 208 (210)
T d1h6ta2 194 R--ALAGLKNLDVLELF 208 (210)
T ss_dssp G--GGTTCTTCSEEEEE
T ss_pred h--hhcCCCCCCEEEcc
Confidence 2 35666677776665
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.58 E-value=1e-14 Score=124.55 Aligned_cols=60 Identities=33% Similarity=0.546 Sum_probs=23.6
Q ss_pred cCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccC
Q 009672 420 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484 (529)
Q Consensus 420 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 484 (529)
.+++|+.|++++|.+... ..+..+++|++|++.+| .+++.. .++++++|+.|++++|+++
T Consensus 126 ~l~~L~~L~l~~n~l~~~--~~l~~~~~L~~L~l~~n-~l~~l~--~l~~l~~L~~L~ls~N~i~ 185 (199)
T d2omxa2 126 NLTNLNRLELSSNTISDI--SALSGLTSLQQLNFSSN-QVTDLK--PLANLTTLERLDISSNKVS 185 (199)
T ss_dssp TCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSS-CCCCCG--GGTTCTTCCEEECCSSCCC
T ss_pred hhhhhHHhhhhhhhhccc--ccccccccccccccccc-cccCCc--cccCCCCCCEEECCCCCCC
Confidence 344444444444443321 12333444444444444 333321 1334444444444444443
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.56 E-value=1.8e-14 Score=122.94 Aligned_cols=160 Identities=32% Similarity=0.424 Sum_probs=85.1
Q ss_pred CCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEEC
Q 009672 302 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 381 (529)
Q Consensus 302 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 381 (529)
+++++|++.++.+... ..+..+++|++|++++|.+++..+ ++.+++|+.|++++|.+.... .+++++.|+.+++
T Consensus 40 ~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l 113 (199)
T d2omxa2 40 DQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADIT--PLANLTNLTGLTL 113 (199)
T ss_dssp TTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCTTCSEEEC
T ss_pred cCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCccc--ccCCccccccccccccccccc--ccccccccccccc
Confidence 3444444444444331 223445555555555555443321 445555555555555544322 2445556666666
Q ss_pred CCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCCh
Q 009672 382 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 461 (529)
Q Consensus 382 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~ 461 (529)
+++..... ..+..+++|+.+++++|++.... .+..+++|+.|++.+|.+++. ..+.++++|++|++++| .+++
T Consensus 114 ~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~~~--~l~~~~~L~~L~l~~n~l~~l--~~l~~l~~L~~L~ls~N-~i~~ 186 (199)
T d2omxa2 114 FNNQITDI--DPLKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLNFSSNQVTDL--KPLANLTTLERLDISSN-KVSD 186 (199)
T ss_dssp CSSCCCCC--GGGTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCCEEECCSS-CCCC
T ss_pred cccccccc--cccchhhhhHHhhhhhhhhcccc--cccccccccccccccccccCC--ccccCCCCCCEEECCCC-CCCC
Confidence 65555442 23455666666666666655432 355666666666666666553 23556667777777776 5655
Q ss_pred hHHHHHhCCCCCCee
Q 009672 462 KTLELISGLTGLVSL 476 (529)
Q Consensus 462 ~~~~~l~~l~~L~~L 476 (529)
.. .++++++|+.|
T Consensus 187 i~--~l~~L~~L~~L 199 (199)
T d2omxa2 187 IS--VLAKLTNLESL 199 (199)
T ss_dssp CG--GGGGCTTCSEE
T ss_pred Cc--cccCCCCCCcC
Confidence 32 35556666654
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=2.9e-15 Score=132.81 Aligned_cols=61 Identities=13% Similarity=0.050 Sum_probs=29.3
Q ss_pred CccEEEccCCCCCHHHHHHhhcCCCCCeE-ecCCCcCChhhhHhhhcCCCccEEEccCCCCCh
Q 009672 231 KLTLLNLEGCPVTAACLDSLSALGSLFYL-NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 292 (529)
Q Consensus 231 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L-~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 292 (529)
.++.|++.++.+.......+ ...++..+ .+.++.++......|..+++|++|++++|+++.
T Consensus 154 ~l~~L~l~~n~l~~i~~~~~-~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~ 215 (242)
T d1xwdc1 154 ESVILWLNKNGIQEIHNCAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS 215 (242)
T ss_dssp SCEEEECCSSCCCEECTTTT-TTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCC
T ss_pred cceeeecccccccccccccc-cchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCc
Confidence 45555555555544322222 22333333 334444544444445556666666666666553
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.51 E-value=1.9e-12 Score=121.26 Aligned_cols=49 Identities=12% Similarity=-0.069 Sum_probs=25.7
Q ss_pred CCCEEEcCCCCccchhHHHHHhCCCCCCEEeccCccccccccccccCCCcCcEEeccC
Q 009672 107 NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 164 (529)
Q Consensus 107 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 164 (529)
+|++|+|+++. ++ .+|+ ..++|++|++++|. +...+.. ..+|+.|++.+
T Consensus 39 ~l~~LdLs~~~-L~-~lp~---~~~~L~~L~Ls~N~-l~~lp~~---~~~L~~L~l~~ 87 (353)
T d1jl5a_ 39 QAHELELNNLG-LS-SLPE---LPPHLESLVASCNS-LTELPEL---PQSLKSLLVDN 87 (353)
T ss_dssp TCSEEECTTSC-CS-CCCS---CCTTCSEEECCSSC-CSSCCCC---CTTCCEEECCS
T ss_pred CCCEEEeCCCC-CC-CCCC---CCCCCCEEECCCCC-Ccccccc---hhhhhhhhhhh
Confidence 57777777776 33 2332 24566666666543 2222222 24555666555
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=4.2e-15 Score=131.71 Aligned_cols=103 Identities=17% Similarity=0.071 Sum_probs=50.5
Q ss_pred CCccEEEccCCCCCHHHHHHhhcC-CCCCeEecCCCcCChhhhHhhhcCCCccEE-EccCCCCChHHHHhhcCCCCCCEE
Q 009672 230 QKLTLLNLEGCPVTAACLDSLSAL-GSLFYLNLNRCQLSDDGCEKFSKIGSLKVL-NLGFNEITDECLVHLKGLTNLESL 307 (529)
Q Consensus 230 ~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L-~l~~~~~~~~~~~~~~~~~~L~~L 307 (529)
+.+..+...++.+.......+..+ ..++.+++.++.+.......+ ...++..+ .+.++.+.......|..+++|+.|
T Consensus 128 ~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~-~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L 206 (242)
T d1xwdc1 128 QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVIL 206 (242)
T ss_dssp SCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTT-TTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEE
T ss_pred cccccccccccccccccccccccccccceeeecccccccccccccc-cchhhhccccccccccccccHHHhcCCCCCCEE
Confidence 334444444444333322333333 356666776666654433332 23343333 345555554333346666777777
Q ss_pred ECCCCCCChhhhhhhcCCCCCCeEEc
Q 009672 308 NLDSCGIGDEGLVNLTGLCNLKCLEL 333 (529)
Q Consensus 308 ~l~~~~~~~~~~~~~~~~~~L~~L~l 333 (529)
++++|.+.......+..+++|+.+++
T Consensus 207 ~Ls~N~l~~l~~~~~~~l~~L~~l~~ 232 (242)
T d1xwdc1 207 DISRTRIHSLPSYGLENLKKLRARST 232 (242)
T ss_dssp ECTTSCCCCCCSSSCTTCCEEESSSE
T ss_pred ECCCCcCCccCHHHHcCCcccccCcC
Confidence 77777666544444444444444433
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.48 E-value=3.6e-12 Score=119.42 Aligned_cols=52 Identities=19% Similarity=0.087 Sum_probs=32.1
Q ss_pred CceeEEEecCcccCchhhhhccCCCCCCeEeccCCcccCchhhhhccCCCCCCEEEcCCCC
Q 009672 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117 (529)
Q Consensus 57 ~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 117 (529)
.++++|+|++++++. .++ ..++|++|++++| .++.. +. ...+|++|+++++.
T Consensus 38 ~~l~~LdLs~~~L~~-lp~---~~~~L~~L~Ls~N-~l~~l-p~---~~~~L~~L~l~~n~ 89 (353)
T d1jl5a_ 38 RQAHELELNNLGLSS-LPE---LPPHLESLVASCN-SLTEL-PE---LPQSLKSLLVDNNN 89 (353)
T ss_dssp HTCSEEECTTSCCSC-CCS---CCTTCSEEECCSS-CCSSC-CC---CCTTCCEEECCSSC
T ss_pred cCCCEEEeCCCCCCC-CCC---CCCCCCEEECCCC-CCccc-cc---chhhhhhhhhhhcc
Confidence 457788888877763 222 2457777888766 45533 22 23467777777665
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=6.4e-14 Score=114.42 Aligned_cols=132 Identities=20% Similarity=0.216 Sum_probs=63.8
Q ss_pred CCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEe
Q 009672 373 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 452 (529)
Q Consensus 373 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ 452 (529)
+.++++|++++|+++.. +..+..+++|+.|++++|+++... .+..+++|++|++++|.++...+..+..+++|++|+
T Consensus 17 ~~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~~l~--~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~ 93 (162)
T d1a9na_ 17 AVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKLD--GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 93 (162)
T ss_dssp TTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEEC--CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred cCcCcEEECCCCCCCcc-CccccccccCCEEECCCCCCCccC--CcccCcchhhhhcccccccCCCccccccccccccce
Confidence 33444444444444443 122234445555555555444431 244455555555555555544333344455555555
Q ss_pred cCCCCCCChhH-HHHHhCCCCCCeeeccCCccChhH---HHhccCCCCCcEEeecCccCChh
Q 009672 453 LSQNCNLTDKT-LELISGLTGLVSLNVSNSRITSAG---LRHLKPLKNLRSLTLESCKVTAN 510 (529)
Q Consensus 453 l~~~~~l~~~~-~~~l~~l~~L~~L~l~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~ 510 (529)
+++| .+.+.. ...+..+++|+.|++++|++.... ...+..+|+|+.|| +.+++..
T Consensus 94 L~~N-~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD--~~~i~~~ 152 (162)
T d1a9na_ 94 LTNN-SLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD--FQKVKLK 152 (162)
T ss_dssp CCSC-CCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET--TEECCHH
T ss_pred eccc-cccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC--CCCCCHH
Confidence 5555 444322 133455566666666666554332 12345566666665 4445443
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=1.2e-13 Score=112.78 Aligned_cols=130 Identities=18% Similarity=0.198 Sum_probs=105.3
Q ss_pred HhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhCCCCC
Q 009672 394 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 473 (529)
Q Consensus 394 l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L 473 (529)
+.++.++++|++++|+++... ..+..+++|+.|++++|.++.. ..+..+++|++|++++| .++...+..+..+++|
T Consensus 14 ~~n~~~lr~L~L~~n~I~~i~-~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N-~i~~l~~~~~~~l~~L 89 (162)
T d1a9na_ 14 YTNAVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNN-RICRIGEGLDQALPDL 89 (162)
T ss_dssp EECTTSCEEEECTTSCCCSCC-CGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSS-CCCEECSCHHHHCTTC
T ss_pred ccCcCcCcEEECCCCCCCccC-ccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccc-cccCCCcccccccccc
Confidence 346678999999999998873 4557889999999999999875 45788999999999999 7888766667789999
Q ss_pred CeeeccCCccChhHH-HhccCCCCCcEEeecCccCChhH-HHHhhcCCCCCceecC
Q 009672 474 VSLNVSNSRITSAGL-RHLKPLKNLRSLTLESCKVTAND-IKRLQSRDLPNLVSFR 527 (529)
Q Consensus 474 ~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~~~l~~l~ 527 (529)
+.|++++|.+..... ..+..+++|++|++++|+++... .+...-..+|+|+.|+
T Consensus 90 ~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD 145 (162)
T d1a9na_ 90 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD 145 (162)
T ss_dssp CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred ccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence 999999999987543 56888999999999999887543 1111113688998875
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.38 E-value=5.7e-14 Score=119.02 Aligned_cols=173 Identities=14% Similarity=0.159 Sum_probs=103.5
Q ss_pred CeEEcCCCccChhhhhhccCCCCCCeEeccCCCCCh-hhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCC
Q 009672 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD-GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 407 (529)
Q Consensus 329 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 407 (529)
++++.+++.++..+. .+ .+++++|++++|.++. .....|.++++|+.|++++|.+....+..+..+++|+.|++++
T Consensus 11 ~~v~Cs~~~L~~iP~-~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~ 87 (192)
T d1w8aa_ 11 TTVDCTGRGLKEIPR-DI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCS-CC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEEeCCCcCccCC-CC--CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence 344555554443321 11 1456667777776653 3345556667777777777777666556666677777777777
Q ss_pred CCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccChhH
Q 009672 408 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 487 (529)
Q Consensus 408 ~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 487 (529)
|++....+.+|.++++|++|+|++|.++...+.+|..+++|++|++++|+-..+.....+. ..++.+.+..+.+....
T Consensus 88 N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~--~~l~~~~l~~~~~~c~~ 165 (192)
T d1w8aa_ 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFA--EWLRKKSLNGGAARCGA 165 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHH--HHHHHHCCSGGGCBBCS
T ss_pred ccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHHh--hhhhhhcccCCCeEeCC
Confidence 7777776667777777777777777777776667777777777887777322221122221 12444455555444322
Q ss_pred HHhccCCCCCcEEeecCccCCh
Q 009672 488 LRHLKPLKNLRSLTLESCKVTA 509 (529)
Q Consensus 488 ~~~~~~~~~L~~L~l~~~~~~~ 509 (529)
+ ..++.++.++++.+.+++
T Consensus 166 p---~~l~~~~l~~L~~n~l~C 184 (192)
T d1w8aa_ 166 P---SKVRDVQIKDLPHSEFKC 184 (192)
T ss_dssp S---TTTTTSBGGGSCTTTCCC
T ss_pred C---hhhcCCEeeecCHhhCcC
Confidence 2 234556666777766653
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.37 E-value=7.4e-14 Score=118.29 Aligned_cols=130 Identities=17% Similarity=0.223 Sum_probs=100.3
Q ss_pred CCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCH-HHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEcc
Q 009672 352 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD-TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 430 (529)
Q Consensus 352 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~ 430 (529)
.+.++.+++.++.++ ..+ .+++++|++++|.++. .....|+.+++|+.|++++|.+....+..+..+++|++|+++
T Consensus 10 ~~~v~Cs~~~L~~iP-~~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls 86 (192)
T d1w8aa_ 10 GTTVDCTGRGLKEIP-RDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TTEEECTTSCCSSCC-SCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCEEEEeCCCcCccC-CCC--CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence 456777777776543 223 2578888888888864 334566778888888888888887777778888888888888
Q ss_pred CCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccCh
Q 009672 431 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 485 (529)
Q Consensus 431 ~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~ 485 (529)
+|.+....+.+|.++++|++|+|++| .++...+..|..+++|++|++++|++..
T Consensus 87 ~N~l~~l~~~~F~~l~~L~~L~L~~N-~l~~i~~~~f~~l~~L~~l~L~~N~~~~ 140 (192)
T d1w8aa_ 87 ENKIKEISNKMFLGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred cccccccCHHHHhCCCcccccccCCc-cccccCHHHhcCCccccccccccccccc
Confidence 88888877777888888888888888 7887777778888888888888887753
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.33 E-value=5.6e-13 Score=103.20 Aligned_cols=102 Identities=21% Similarity=0.222 Sum_probs=58.3
Q ss_pred EEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCC
Q 009672 402 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 481 (529)
Q Consensus 402 ~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 481 (529)
.|++++|+++... .+..+++|++|++++|.++.. +..+..+++|++|++++| .++... .++.+++|+.|++++|
T Consensus 2 ~L~Ls~n~l~~l~--~l~~l~~L~~L~ls~N~l~~l-p~~~~~l~~L~~L~l~~N-~i~~l~--~~~~l~~L~~L~l~~N 75 (124)
T d1dcea3 2 VLHLAHKDLTVLC--HLEQLLLVTHLDLSHNRLRAL-PPALAALRCLEVLQASDN-ALENVD--GVANLPRLQELLLCNN 75 (124)
T ss_dssp EEECTTSCCSSCC--CGGGGTTCCEEECCSSCCCCC-CGGGGGCTTCCEEECCSS-CCCCCG--GGTTCSSCCEEECCSS
T ss_pred EEEcCCCCCCCCc--ccccCCCCCEEECCCCccCcc-hhhhhhhhcccccccccc-cccccC--ccccccccCeEECCCC
Confidence 4555666555442 245556666666666666543 334555666666666666 555432 3556666666666666
Q ss_pred ccChhHH-HhccCCCCCcEEeecCccCCh
Q 009672 482 RITSAGL-RHLKPLKNLRSLTLESCKVTA 509 (529)
Q Consensus 482 ~~~~~~~-~~~~~~~~L~~L~l~~~~~~~ 509 (529)
.+.+... ..+..+++|+.|++++|+++.
T Consensus 76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~~ 104 (124)
T d1dcea3 76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104 (124)
T ss_dssp CCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred ccCCCCCchhhcCCCCCCEEECCCCcCCc
Confidence 6654332 445566666666666666553
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.27 E-value=2.1e-12 Score=99.93 Aligned_cols=102 Identities=25% Similarity=0.331 Sum_probs=53.0
Q ss_pred EEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCC
Q 009672 378 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 457 (529)
Q Consensus 378 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~ 457 (529)
.|++++|.++.. ..+..+++|++|++++|+++..+ ..+..+++|++|++++|.++.. ..+..+++|++|++++|
T Consensus 2 ~L~Ls~n~l~~l--~~l~~l~~L~~L~ls~N~l~~lp-~~~~~l~~L~~L~l~~N~i~~l--~~~~~l~~L~~L~l~~N- 75 (124)
T d1dcea3 2 VLHLAHKDLTVL--CHLEQLLLVTHLDLSHNRLRALP-PALAALRCLEVLQASDNALENV--DGVANLPRLQELLLCNN- 75 (124)
T ss_dssp EEECTTSCCSSC--CCGGGGTTCCEEECCSSCCCCCC-GGGGGCTTCCEEECCSSCCCCC--GGGTTCSSCCEEECCSS-
T ss_pred EEEcCCCCCCCC--cccccCCCCCEEECCCCccCcch-hhhhhhhccccccccccccccc--CccccccccCeEECCCC-
Confidence 445555555442 22445555555555555555432 2345555555555555555543 23555556666666665
Q ss_pred CCChhH-HHHHhCCCCCCeeeccCCccCh
Q 009672 458 NLTDKT-LELISGLTGLVSLNVSNSRITS 485 (529)
Q Consensus 458 ~l~~~~-~~~l~~l~~L~~L~l~~~~~~~ 485 (529)
.+++.. ...+..+++|+.|++++|++.+
T Consensus 76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~~ 104 (124)
T d1dcea3 76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104 (124)
T ss_dssp CCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred ccCCCCCchhhcCCCCCCEEECCCCcCCc
Confidence 444332 2345556666666666666543
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.11 E-value=1.4e-12 Score=110.34 Aligned_cols=149 Identities=22% Similarity=0.237 Sum_probs=100.7
Q ss_pred CCCeEeccCC--CCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEE
Q 009672 351 NLESINLSFT--GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 428 (529)
Q Consensus 351 ~L~~L~l~~~--~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ 428 (529)
..+.+++.+. .+.. .+..+..+++|+.|++++|.++.. ..+..+++|+.|++++|.++... .....+++|++|+
T Consensus 24 ~~~~~~l~~~~~~i~~-l~~sl~~L~~L~~L~Ls~n~I~~i--~~l~~l~~L~~L~Ls~N~i~~i~-~~~~~~~~L~~L~ 99 (198)
T d1m9la_ 24 EAEKVELHGMIPPIEK-MDATLSTLKACKHLALSTNNIEKI--SSLSGMENLRILSLGRNLIKKIE-NLDAVADTLEELW 99 (198)
T ss_dssp TCSCEECCBCCTTCCC-CHHHHHHTTTCCEEECSEEEESCC--CCHHHHTTCCEEECCEEEECSCS-SHHHHHHHCCEEE
T ss_pred ccceeeeecccCchhh-hhhHHhcccccceeECcccCCCCc--ccccCCccccChhhccccccccc-ccccccccccccc
Confidence 4555555543 2322 234566778888888888888764 34677788888888888777643 2233456788888
Q ss_pred ccCCCCChhhhhhccCCCCCCeEecCCCCCCChhH-HHHHhCCCCCCeeeccCCccChhHHH----------hccCCCCC
Q 009672 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT-LELISGLTGLVSLNVSNSRITSAGLR----------HLKPLKNL 497 (529)
Q Consensus 429 l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~----------~~~~~~~L 497 (529)
+++|.++.. ..+..+++|++|++++| .++... ...+..+++|+.|++++|++...... .+..+|+|
T Consensus 100 l~~N~i~~l--~~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L 176 (198)
T d1m9la_ 100 ISYNQIASL--SGIEKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNL 176 (198)
T ss_dssp CSEEECCCH--HHHHHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSC
T ss_pred ccccccccc--ccccccccccccccccc-hhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCc
Confidence 888888764 33666778888888888 676653 35677888888888888877553321 14567888
Q ss_pred cEEeecCccCC
Q 009672 498 RSLTLESCKVT 508 (529)
Q Consensus 498 ~~L~l~~~~~~ 508 (529)
+.|| +..++
T Consensus 177 ~~LD--~~~I~ 185 (198)
T d1m9la_ 177 KKLD--GMPVD 185 (198)
T ss_dssp CEES--SGGGT
T ss_pred CEeC--CccCC
Confidence 8876 44444
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.10 E-value=1e-12 Score=111.19 Aligned_cols=106 Identities=25% Similarity=0.262 Sum_probs=49.1
Q ss_pred ccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCc
Q 009672 346 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 425 (529)
Q Consensus 346 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~ 425 (529)
+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.... .....+++|+.|++++|.++... .+..+++|+
T Consensus 44 l~~L~~L~~L~Ls~n~I~~i--~~l~~l~~L~~L~Ls~N~i~~i~-~~~~~~~~L~~L~l~~N~i~~l~--~~~~l~~L~ 118 (198)
T d1m9la_ 44 LSTLKACKHLALSTNNIEKI--SSLSGMENLRILSLGRNLIKKIE-NLDAVADTLEELWISYNQIASLS--GIEKLVNLR 118 (198)
T ss_dssp HHHTTTCCEEECSEEEESCC--CCHHHHTTCCEEECCEEEECSCS-SHHHHHHHCCEEECSEEECCCHH--HHHHHHHSS
T ss_pred HhcccccceeECcccCCCCc--ccccCCccccChhhccccccccc-ccccccccccccccccccccccc--ccccccccc
Confidence 34445555555555544432 12444455555555555444321 11122234555555555555432 234445555
Q ss_pred EEEccCCCCChhhh-hhccCCCCCCeEecCCC
Q 009672 426 SLEICGGGLTDAGV-KHIKDLSSLTLLNLSQN 456 (529)
Q Consensus 426 ~L~l~~~~l~~~~~-~~~~~~~~L~~L~l~~~ 456 (529)
.|++++|.+++... ..+..+++|+.|++++|
T Consensus 119 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N 150 (198)
T d1m9la_ 119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp EEEESEEECCCHHHHHHHTTTTTCSEEEECSS
T ss_pred ccccccchhccccccccccCCCccceeecCCC
Confidence 55555555544321 23445555555555555
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.95 E-value=4.2e-10 Score=90.62 Aligned_cols=87 Identities=20% Similarity=0.221 Sum_probs=41.3
Q ss_pred cCCCCcEEEccCC-CCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccChhHHHhccCCCCCc
Q 009672 420 NFKNLRSLEICGG-GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLR 498 (529)
Q Consensus 420 ~~~~L~~L~l~~~-~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 498 (529)
.+++|++|+++++ .++.....+|.++++|+.|++++| .++.+.+.+|..+++|+.|+|++|.+.......+.. .+|+
T Consensus 29 ~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~-~~l~ 106 (156)
T d2ifga3 29 GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQG-LSLQ 106 (156)
T ss_dssp SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCS-CCCC
T ss_pred CccccCeeecCCCccccccCchhhccccccCcceeecc-ccCCcccccccccccccceeccCCCCcccChhhhcc-cccc
Confidence 3444455555433 244444444444555555555555 444444444555555555555555554433333332 2355
Q ss_pred EEeecCccCC
Q 009672 499 SLTLESCKVT 508 (529)
Q Consensus 499 ~L~l~~~~~~ 508 (529)
.|++++|++.
T Consensus 107 ~L~L~~Np~~ 116 (156)
T d2ifga3 107 ELVLSGNPLH 116 (156)
T ss_dssp EEECCSSCCC
T ss_pred ccccCCCccc
Confidence 5555555543
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.89 E-value=5.7e-10 Score=89.85 Aligned_cols=103 Identities=22% Similarity=0.265 Sum_probs=56.3
Q ss_pred CCeEeccCCCCChhhhhhhcCCCCCcEEECCCC-CCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEcc
Q 009672 352 LESINLSFTGISDGSLRKLAGLSSLKSLNLDAR-QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 430 (529)
Q Consensus 352 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~ 430 (529)
.+.++.+++.+.+ .+..+...++|++|++.++ .++...+..|..+++|+.|++++|+++...+.+|..+++|++|+++
T Consensus 10 ~~~l~c~~~~~~~-~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls 88 (156)
T d2ifga3 10 SSGLRCTRDGALD-SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (156)
T ss_dssp SSCEECCSSCCCT-TTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CCeEEecCCCCcc-CcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence 3445555544443 2333445556666666543 3555444455556666666666666666555556666666666666
Q ss_pred CCCCChhhhhhccCCCCCCeEecCCC
Q 009672 431 GGGLTDAGVKHIKDLSSLTLLNLSQN 456 (529)
Q Consensus 431 ~~~l~~~~~~~~~~~~~L~~L~l~~~ 456 (529)
+|.++......+.. ..|++|+|++|
T Consensus 89 ~N~l~~l~~~~~~~-~~l~~L~L~~N 113 (156)
T d2ifga3 89 FNALESLSWKTVQG-LSLQELVLSGN 113 (156)
T ss_dssp SSCCSCCCSTTTCS-CCCCEEECCSS
T ss_pred CCCCcccChhhhcc-ccccccccCCC
Confidence 66665544444432 24666666666
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.32 E-value=2.3e-06 Score=69.15 Aligned_cols=17 Identities=29% Similarity=0.229 Sum_probs=7.5
Q ss_pred CCCCcEEEccCCCCChh
Q 009672 421 FKNLRSLEICGGGLTDA 437 (529)
Q Consensus 421 ~~~L~~L~l~~~~l~~~ 437 (529)
.+.|++|++++|.+++.
T Consensus 71 n~~L~~L~L~~n~i~~~ 87 (167)
T d1pgva_ 71 SPSLRVLNVESNFLTPE 87 (167)
T ss_dssp CSSCCEEECCSSBCCHH
T ss_pred cccccceeeehhhcchH
Confidence 34444444444444443
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.29 E-value=1.9e-06 Score=69.64 Aligned_cols=25 Identities=12% Similarity=0.232 Sum_probs=12.6
Q ss_pred ccCCCCCCeEEccCCCCChhHHHHh
Q 009672 176 LSGLTNLKSLQISCSKVTDSGIAYL 200 (529)
Q Consensus 176 l~~~~~L~~L~l~~~~~~~~~~~~l 200 (529)
+...+.|++|++++|.+.+.+...+
T Consensus 40 L~~n~~L~~L~Ls~n~l~~~~~~~l 64 (167)
T d1pgva_ 40 ACNSKHIEKFSLANTAISDSEARGL 64 (167)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTH
T ss_pred HhhCCccceeeccccccchhHHHHH
Confidence 3344555555555555554444333
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=98.13 E-value=1.1e-05 Score=65.09 Aligned_cols=67 Identities=24% Similarity=0.298 Sum_probs=32.1
Q ss_pred CCCCCcEEECCC-CCCCHHHHHHH----hcCCCCCEEecCCCCCChHHHH----hhhcCCCCcEEEccCCCCChhh
Q 009672 372 GLSSLKSLNLDA-RQITDTGLAAL----TSLTGLTHLDLFGARITDSGAA----YLRNFKNLRSLEICGGGLTDAG 438 (529)
Q Consensus 372 ~~~~L~~L~l~~-~~~~~~~~~~l----~~~~~L~~L~l~~~~l~~~~~~----~~~~~~~L~~L~l~~~~l~~~~ 438 (529)
+.++|++|++++ +.++......+ ...++|++|++++|.++..+.. .+...++++.+++++|.+++.+
T Consensus 15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g 90 (166)
T d1io0a_ 15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 90 (166)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchh
Confidence 445566666655 34544333222 2445555555555555544322 2234455555555555554443
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=98.13 E-value=1.9e-05 Score=63.55 Aligned_cols=109 Identities=17% Similarity=0.175 Sum_probs=46.9
Q ss_pred cCCCCCEEecCC-CCCChHHHH----hhhcCCCCcEEEccCCCCChhhhhhc----cCCCCCCeEecCCCCCCChhHH--
Q 009672 396 SLTGLTHLDLFG-ARITDSGAA----YLRNFKNLRSLEICGGGLTDAGVKHI----KDLSSLTLLNLSQNCNLTDKTL-- 464 (529)
Q Consensus 396 ~~~~L~~L~l~~-~~l~~~~~~----~~~~~~~L~~L~l~~~~l~~~~~~~~----~~~~~L~~L~l~~~~~l~~~~~-- 464 (529)
+.++|++|++++ +.++..+.. .+..+++|++|++++|.+++.+...+ ...+.++.+++++| .+.+...
T Consensus 15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~-~~~~~g~~~ 93 (166)
T d1io0a_ 15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-FISGSGILA 93 (166)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHHHHHH
T ss_pred cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccc-cccchhHHH
Confidence 445555555554 234433322 22344555555555555544433322 22345555555555 3433322
Q ss_pred --HHHhCCCCCCeeec--cCCccChhHH----HhccCCCCCcEEeecCc
Q 009672 465 --ELISGLTGLVSLNV--SNSRITSAGL----RHLKPLKNLRSLTLESC 505 (529)
Q Consensus 465 --~~l~~l~~L~~L~l--~~~~~~~~~~----~~~~~~~~L~~L~l~~~ 505 (529)
..+...++|+.++| ++|++.+.+. ..+..++.|+.|+++.+
T Consensus 94 l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~ 142 (166)
T d1io0a_ 94 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 142 (166)
T ss_dssp HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence 22233445554333 2334443222 22334455555555444
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.12 E-value=4.9e-07 Score=72.77 Aligned_cols=64 Identities=22% Similarity=0.203 Sum_probs=28.9
Q ss_pred cCCCCcEEEccCCCCChhh--hhhccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccC
Q 009672 420 NFKNLRSLEICGGGLTDAG--VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484 (529)
Q Consensus 420 ~~~~L~~L~l~~~~l~~~~--~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 484 (529)
.+++|++|++++|.++... ...++.+++|+.|++++| .+++..........+|+.|++++|++.
T Consensus 63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N-~i~~l~~l~~l~~~~L~~L~L~~Npl~ 128 (162)
T d1koha1 63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIKGLKLEELWLDGNSLS 128 (162)
T ss_dssp HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTS-CCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccC-ccccchhhhhhhccccceeecCCCCcC
Confidence 3444555555555444332 122334455555555555 444433222223334555555555554
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.01 E-value=9.7e-07 Score=70.99 Aligned_cols=83 Identities=20% Similarity=0.233 Sum_probs=57.1
Q ss_pred HhcCCCCCEEecCCCCCChHH--HHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChh-------HH
Q 009672 394 LTSLTGLTHLDLFGARITDSG--AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK-------TL 464 (529)
Q Consensus 394 l~~~~~L~~L~l~~~~l~~~~--~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~-------~~ 464 (529)
...+++|+.|++++|+++... ...+..+++|+.|++++|.+++...........|+++++++|+ +... ..
T Consensus 61 ~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Np-l~~~~~~~~~y~~ 139 (162)
T d1koha1 61 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNS-LSDTFRDQSTYIS 139 (162)
T ss_dssp HHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTST-TSSSSSSHHHHHH
T ss_pred HHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCC-cCcCcccchhHHH
Confidence 346788888888888887643 3446778888889998888887655444445678888998884 4321 12
Q ss_pred HHHhCCCCCCeee
Q 009672 465 ELISGLTGLVSLN 477 (529)
Q Consensus 465 ~~l~~l~~L~~L~ 477 (529)
..+..+|+|+.||
T Consensus 140 ~i~~~~P~L~~LD 152 (162)
T d1koha1 140 AIRERFPKLLRLD 152 (162)
T ss_dssp HHHTTSTTCCEET
T ss_pred HHHHHCCCCCEEC
Confidence 3455677777774
|