Citrus Sinensis ID: 009696

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------53
Protein Sequence
MATSGHAASGMKGEIDQESVGEYGAQNPSTVHYNYYYPGSNGSFSQVDNNGYIHTDGSHSGVHSDNGSLLYYLPGYDPYSTLVGVDGQCVGQQPYFSSSGYLQHPVSYGSEVMPCYSWDSTYVADIQNGNAVGFGNEKYGGSTAFAKSNGLNSVKKNGCFTNKVSKSSYTQSTKPVSKVTQLDSDLSAGFLKGSNPLGNFSAFSNQKQGFFPNMVNYSTNGRMWNGNDRYKSRDKFSRAGGLGMPTELIRGPRAENKSASLEISDKKEVLSPTVSRDQYNLPDFQVEYEKAKFYVIKSYSEDDIHKCIKYDVWSSTPNGNKKLDATFNEAEAKADETGTRCPIFLFFSVNGSGQFVGLAEMMGKVDFNKDMDFWQLDKWNGFFPVKWHVIKDVPNTLLRHITLENNENKPVTHSRDTQEIGLKQGLEMLKIFKSYSAKTSLLDDFNFYENKERSFHGKKSSKPATLQMDIFNDDDFTKQIKSAEKEFDEDSISIINLTKNLSLKPCTQKKSEAVKNPVEKAIPSVIAP
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccHHHHHHHHHccEEEcccccHHHHHHHHHHHHHHHccccccccEEEEEEEccccHHHHHHHHcccccccccccccccccccccccEEEEEEEcccccccccccccccccccEEEccccccccHHHHHHHHHHHHHccccccccccccHHHHHHHHHccccccccccccccccccccHHHHccccccccccccHHHHHcccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccHccccccccEEEEEEEccccccccEEEEEEEEccccccHHHHHHHHHHHHHHccccccccEEEEEEEcccccEEEEEEEEccccccccccEEEcccccccccEEEEEEEEcccccEEEEEEEcccccccccccccccccHHHHHHHHHHHHccccccccHccHHHHHHHHHHHHHHHHcccccccccccccccHccccccccccccccccccccccccccccccccccccHccccHHccccccccc
Coil and Loop (DISEMBL)
matsghaasgmkgeidqesvgeygaqnpstvhynyyypgsngsfsqvdnngyihtdgshsgvhsdngsllyylpgydpystlvgvdgqcvgqqpyfsssgylqhpvsygsevmpcyswdstyvadiqngnavgfgnekyggstafaksnglnsvkkngcftnkvskssytqstkpvskvtqldsdlsagflkgsnplgnfsafsnqkqgffpnmvnystngrmwngndryksrdkfsragglgmptelirgpraenksasleisdkkevlsptvsrdqynlpdfqVEYEKAKFYVIKsyseddihkcikydvwsstpngnkklDATFNEAEakadetgtrcpiflffsvngsgQFVGLAEMmgkvdfnkdmdfwqldkwngffpvkwHVIKDVPNTLLRHITlennenkpvthsrdtqEIGLKQGLEMLKIFKSYsaktsllddfnfyenkersfhgkksskpatlqmdifndddFTKQIKSAEKEFDEDSISIINltknlslkpctqkkseavknpvekaipsviap
Flexible Loop (DISEMBL)
matsghaasgmkgeidqesvGEYGAQNPSTVHYNYYYPGSNGSFSQVDNNGYIHTDGSHSGVHSDNGSLLYYLPGYDPYSTLVGVDGQCVGQQPYFSSSGYLQHPVSYGSEVMPCYSWDSTYVADIQNGNAVGFGNEKYGGSTAFAKSNGLNSVKKNGCFtnkvskssytqstkpvskVTQLDSDLSAGFLKGSNPLGNFSAFSNQKQGFFPNMVNYSTNGRMWNGNDRYKSRDKFsragglgmptelirgpraenksasleisdkkevlsptvsrdqynlpdfqvEYEKAKFYVIKSYSEDDIHKCIKydvwsstpngNKKLDATFNEAEAKADETGTRCPIFLFFSVNGSGQFVGLAEMMGKVDFNKDMDFWQLDKWNGFFPVKWHVIKDVPNTLLRHITlennenkpvthsrdtQEIGLKQGLEMLKIFKSYSAKTSLLDDFNFYENKERsfhgkksskpatlqMDIFNDDDFTKQIKSAEkefdedsisiinltknlslkpctqkkseavknpvekaipsviap
Low Complexity Region (SEG)
MATSGHAASGMKGEIDQESVGEYGAQNPSTVHYNYYYPGSNGSFSQVDNNGYIHTDGSHSGVHSDNGSLLYYLPGYDPYSTLVGVDGQCVGQQPYFSSSGYLQHPVSYGSEVMPCYSWDSTYVADIQNGNAVGFGNEKYGGSTAFAKSNGLNSVKKNGCFTNKVSKSSYTQSTKPVSKVTQLDSDLSAGFLKGSNPLGNFSAFSNQKQGFFPNMVNYSTNGRMWNGNDRYKSRDKFSRAGGLGMPTELIRGPRAENKSASLEISDKKEVLSPTVSRDQYNLPDFQVEYEKAKFYVIKSYSEDDIHKCIKYDVWSSTPNGNKKLDATFNEAEAKADETGTRCPIFLFFSVNGSGQFVGLAEMMGKVDFNKDMDFWQLDKWNGFFPVKWHVIKDVPNTLLRHITLENNENKPVTHSRDTQEIGLKQGLEMLKIFKSYSAKTSLLDDFNFYENKERSFHGKKSSKPATLQMDIFNDDDFTKQIKSAEKEFDEDSISIINLTKNLSLKPCTQKKSEAVKNPVEKAIPSVIAP
Disordered region (IsUnstruct)
*****************************TVHYNYYYPGSNGSFSQVDNNGYIHTDGSHSGVHSDNGSLLYYLPGYDPYSTLVGVDGQCVGQQPYFSSSGYLQHPVSYGSEVMPCYSWDSTYVADIQNGNAVGFGNEKYGGSTAFA************C*******************************************F****QGFFPNMVNYSTNGRMWN****************************************************QYNLPDFQVEYEKAKFYVIKSYSEDDIHKCIKYDVWSST********************TGTRCPIFLFFSVNGSGQFVGLAEMMGKVDFNKDMDFWQLDKWNGFFPVKWHVIKDVPNTLLRHITLE***************IGLKQGLEMLKIFKSYSAKTSLLDDFNFYE*******************************************SIINLT******************************
Disordered Region (DISOPRED)
*************************QNPSTVHYNYYYPGSNGSFSQVDNNGYI***G******SDNGSLLYYLPGYDPY*********************************************************************************************************************************************GRMWNGND**************************************************YNLPDFQVEYEKAKFYVIKSYSEDDIHKCIKYDVWSSTPNGNKKLDATFNEAEAKADETGTRCPIFLFFSVNGSGQFVGLAEMMGK*DFNKDMDFWQLDKWNGFFPVKWHVIKDVPNTLLRHITLENNENKPVTHSRDTQEIGLKQGLEMLKIFKSYSAKTSLLDDFN**********************************************************************************
Disordered Region (DISEMBL)
************GEIDQESVGEYGAQNPSTVHYNYYYPGSNGSFSQVDNNGYIHTDGSHSGVHSDNGSLLYYLPGYDPYSTLVGVDGQCVGQQPYFSSSGYLQHPVSYGSEVMPCYSWDSTYVADIQNGNAVGFGNEKYGGSTAFAKSNGLNSVKKNGCFTNKV**************VTQLDSDLSAGFLKGSNPLGNFSAFSNQKQGFFPNMVNYSTNGRMWNGNDRYKSRDKFSRAGGLGMPTELIRGPRAENKSASLEISDKKEVLSPTVSRDQYNLPDFQVEYEKAKFYVIKSYSEDDIHKCIKYDVWSSTPNGNKKLDATFNEAEAKADETGTRCPIFLFFSVNGSGQFVGLAEMMGKVDFNKDMDFWQLDKWNGFFPVKWHVIKDVPNTLLRHITLENNENKPVTHSRDTQEIGLKQGLEMLKIFKSYSAKTSLLDDFNFYENKE**********PATLQMDIFNDDDFTKQIKSAEKEFDEDSISIINLTKNLSLKPCTQKKSEAVKNPVEKAIPSVIAP
Disordered Region (DISPRO)
****************QESVGEYGAQNPSTVHYNYYYPGSNGSFSQVDNNGYIHTDGSHSGVHSDNGSLLYYLPGYDPYSTLVGVDGQCVGQQPYFSSSGYLQHPVSYGSEVMPCYSWDSTYVADIQNGNAVGFGNEK********************************************************N***NFSAFSNQKQGFFPNMVNYSTNGRMW*********************************************LSPTVSRDQYNLPDFQVEYEKAKFYVIKSYSEDDIHKCIKYDVWSSTPNGNKKLDATFNEAEAKADETGTRCPIFLFFSVNGSGQFVGLAEMMGKVDFNKDMDFWQLDKWNGFFPVKWHVIKDVPNTLLRHITLENNENKPVTHSRDTQEIGLKQGLEMLKIFKSYSAKTSLLDDFNFYENKERSFHGKK*********************************************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MATSGHAASGMKGEIDQESVGEYGAQNPSTVHYNYYYPGSNGSFSQVDNNGYIHTDGSHSGVHSDNGSLLYYLPGYDPYSTLVGVDGQCVGQQPYFSSSGYLQHPVSYGSEVMPCYSWDSTYVADIQNGNAVGFGNEKYGGSTAFAKSNGLNSVKKNGCFTNKVSKSSYTQSTKPVSKVTQLDSDLSAGFLKGSNPLGNFSAFSNQKQGFFPNMVNYSTNGRMWNGNDRYKSRDKFSRAGGLGMPTELIRGPRAENKSASLEISDKKEVLSPTVSRDQYNLPDFQVEYEKAKFYVIKSYSEDDIHKCIKYDVWSSTPNGNKKLDATFNEAEAKADETGTRCPIFLFFSVNGSGQFVGLAEMMGKVDFNKDMDFWQLDKWNGFFPVKWHVIKDVPNTLLRHITLENNENKPVTHSRDTQEIGLKQGLEMLKIFKSYSAKTSLLDDFNFYENKERSFHGKKSSKPATLQMDIFNDDDFTKQIKSAEKEFDEDSISIINLTKNLSLKPCTQKKSEAVKNPVEKAIPSVIAP
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	528	2.2.26 [Sep-21-2011]
Q0VCZ3	580	YTH domain family protein	yes	no	0.344	0.313	0.497	4e-50
Q4R5D9	579	YTH domain family protein	N/A	no	0.344	0.314	0.497	4e-50
Q9Y5A9	579	YTH domain family protein	yes	no	0.344	0.314	0.497	4e-50
P59326	559	YTH domain family protein	no	no	0.335	0.316	0.489	8e-48
Q9BYJ9	559	YTH domain family protein	no	no	0.390	0.368	0.447	2e-47
Q8BYK6	585	YTH domain family protein	no	no	0.350	0.316	0.484	5e-47
Q5RFL8	585	YTH domain family protein	yes	no	0.350	0.316	0.484	6e-47
Q7Z739	585	YTH domain family protein	no	no	0.350	0.316	0.484	6e-47
Q06390	306	YTH domain-containing pro	yes	no	0.282	0.486	0.360	1e-22
Q9QY02	738	YTH domain-containing pro	no	no	0.25	0.178	0.304	2e-11

>sp|Q0VCZ3|YTHD2_BOVIN YTH domain family protein 2 OS=Bos taurus GN=YTHDF2 PE=2 SV=1

 Score =  199 bits (506), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 94/189 (49%), Positives = 123/189 (65%), Gaps = 7/189 (3%)

Query: 264 SDKKEVLSPTVSRDQYNLPDFQVEYEKAKFYVIKSYSEDDIHKCIKYDVWSSTPNGNKKL 323
           S+   VL    S + YN  DF    +  + ++IKSYSEDDIH+ IKY++W ST +GNK+L
Sbjct: 384 SEPHPVLEKLRSINNYNPKDFDWNLKHGRVFIIKSYSEDDIHRSIKYNIWCSTEHGNKRL 443

Query: 324 DATFNEAEAKADETGTRCPIFLFFSVNGSGQFVGLAEMMGKVDFNKDMDFWQLDKWNGFF 383
           DA +     K        P++L FSVNGSG F G+AEM   VD+N     W  DKW G F
Sbjct: 444 DAAYRSMNGKG-------PVYLLFSVNGSGHFCGVAEMKSAVDYNTCAGVWSQDKWKGRF 496

Query: 384 PVKWHVIKDVPNTLLRHITLENNENKPVTHSRDTQEIGLKQGLEMLKIFKSYSAKTSLLD 443
            V+W  +KDVPN+ LRHI LENNENKPVT+SRDTQE+ L++  ++LKI  SY   TS+ D
Sbjct: 497 DVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQVLKIIASYKHTTSIFD 556

Query: 444 DFNFYENKE 452
           DF+ YE ++
Sbjct: 557 DFSHYEKRQ 565

Bos taurus (taxid: 9913)

>sp|Q4R5D9|YTHD2_MACFA YTH domain family protein 2 OS=Macaca fascicularis GN=YTHDF2 PE=2 SV=1

 Score =  199 bits (506), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 94/189 (49%), Positives = 123/189 (65%), Gaps = 7/189 (3%)

Query: 264 SDKKEVLSPTVSRDQYNLPDFQVEYEKAKFYVIKSYSEDDIHKCIKYDVWSSTPNGNKKL 323
           S+   VL    S + YN  DF    +  + ++IKSYSEDDIH+ IKY++W ST +GNK+L
Sbjct: 383 SEPHPVLEKLRSINNYNPKDFDWNLKHGRVFIIKSYSEDDIHRSIKYNIWCSTEHGNKRL 442

Query: 324 DATFNEAEAKADETGTRCPIFLFFSVNGSGQFVGLAEMMGKVDFNKDMDFWQLDKWNGFF 383
           DA +     K        P++L FSVNGSG F G+AEM   VD+N     W  DKW G F
Sbjct: 443 DAAYRSMNGKG-------PVYLLFSVNGSGHFCGVAEMKSAVDYNTCAGVWSQDKWKGRF 495

Query: 384 PVKWHVIKDVPNTLLRHITLENNENKPVTHSRDTQEIGLKQGLEMLKIFKSYSAKTSLLD 443
            V+W  +KDVPN+ LRHI LENNENKPVT+SRDTQE+ L++  ++LKI  SY   TS+ D
Sbjct: 496 DVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQVLKIIASYKHTTSIFD 555

Query: 444 DFNFYENKE 452
           DF+ YE ++
Sbjct: 556 DFSHYEKRQ 564

Macaca fascicularis (taxid: 9541)

>sp|Q9Y5A9|YTHD2_HUMAN YTH domain family protein 2 OS=Homo sapiens GN=YTHDF2 PE=1 SV=2

 Score =  199 bits (506), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 94/189 (49%), Positives = 123/189 (65%), Gaps = 7/189 (3%)

Query: 264 SDKKEVLSPTVSRDQYNLPDFQVEYEKAKFYVIKSYSEDDIHKCIKYDVWSSTPNGNKKL 323
           S+   VL    S + YN  DF    +  + ++IKSYSEDDIH+ IKY++W ST +GNK+L
Sbjct: 383 SEPHPVLEKLRSINNYNPKDFDWNLKHGRVFIIKSYSEDDIHRSIKYNIWCSTEHGNKRL 442

Query: 324 DATFNEAEAKADETGTRCPIFLFFSVNGSGQFVGLAEMMGKVDFNKDMDFWQLDKWNGFF 383
           DA +     K        P++L FSVNGSG F G+AEM   VD+N     W  DKW G F
Sbjct: 443 DAAYRSMNGKG-------PVYLLFSVNGSGHFCGVAEMKSAVDYNTCAGVWSQDKWKGRF 495

Query: 384 PVKWHVIKDVPNTLLRHITLENNENKPVTHSRDTQEIGLKQGLEMLKIFKSYSAKTSLLD 443
            V+W  +KDVPN+ LRHI LENNENKPVT+SRDTQE+ L++  ++LKI  SY   TS+ D
Sbjct: 496 DVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQVLKIIASYKHTTSIFD 555

Query: 444 DFNFYENKE 452
           DF+ YE ++
Sbjct: 556 DFSHYEKRQ 564

Homo sapiens (taxid: 9606)

>sp|P59326|YTHD1_MOUSE YTH domain family protein 1 OS=Mus musculus GN=Ythdf1 PE=2 SV=1

 Score =  191 bits (486), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 90/184 (48%), Positives = 117/184 (63%), Gaps = 7/184 (3%)

Query: 269 VLSPTVSRDQYNLPDFQVEYEKAKFYVIKSYSEDDIHKCIKYDVWSSTPNGNKKLDATFN 328
           VL    +   YN  +F    +  + ++IKSYSEDDIH+ IKY +W ST +GNK+LD  F 
Sbjct: 367 VLEKLKAAHSYNPKEFDWNLKSGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDGAFR 426

Query: 329 EAEAKADETGTRCPIFLFFSVNGSGQFVGLAEMMGKVDFNKDMDFWQLDKWNGFFPVKWH 388
              +K        P++L FSVNGSG F G+AEM   VD+      W  DKW G F VKW 
Sbjct: 427 SMSSKG-------PVYLLFSVNGSGHFCGVAEMKSPVDYGTSAGVWSQDKWKGKFDVKWI 479

Query: 389 VIKDVPNTLLRHITLENNENKPVTHSRDTQEIGLKQGLEMLKIFKSYSAKTSLLDDFNFY 448
            +KDVPN  LRHI LENN+NKPVT+SRDTQE+ L++  ++LKI  SY   TS+ DDF+ Y
Sbjct: 480 FVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKIIASYKHTTSIFDDFSHY 539

Query: 449 ENKE 452
           E ++
Sbjct: 540 EKRQ 543

Mus musculus (taxid: 10090)

>sp|Q9BYJ9|YTHD1_HUMAN YTH domain family protein 1 OS=Homo sapiens GN=YTHDF1 PE=1 SV=1

 Score =  190 bits (483), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 97/217 (44%), Positives = 131/217 (60%), Gaps = 11/217 (5%)

Query: 236 FSRAGGLGMPTELIRGPRAENKSASLEISDKKEVLSPTVSRDQYNLPDFQVEYEKAKFYV 295
           F ++GG G  +    G    N + S+E      VL    +   YN  +F+   +  + ++
Sbjct: 338 FGQSGGAGSDSNS-PGNVQPNSAPSVE---SHPVLEKLKAAHSYNPKEFEWNLKSGRVFI 393

Query: 296 IKSYSEDDIHKCIKYDVWSSTPNGNKKLDATFNEAEAKADETGTRCPIFLFFSVNGSGQF 355
           IKSYSEDDIH+ IKY +W ST +GNK+LD+ F    +K        P++L FSVNGSG F
Sbjct: 394 IKSYSEDDIHRSIKYSIWCSTEHGNKRLDSAFRCMSSKG-------PVYLLFSVNGSGHF 446

Query: 356 VGLAEMMGKVDFNKDMDFWQLDKWNGFFPVKWHVIKDVPNTLLRHITLENNENKPVTHSR 415
            G+AEM   VD+      W  DKW G F V+W  +KDVPN  LRHI LENN+NKPVT+SR
Sbjct: 447 CGVAEMKSPVDYGTSAGVWSQDKWKGKFDVQWIFVKDVPNNQLRHIRLENNDNKPVTNSR 506

Query: 416 DTQEIGLKQGLEMLKIFKSYSAKTSLLDDFNFYENKE 452
           DTQE+ L++  ++LKI  SY   TS+ DDF  YE ++
Sbjct: 507 DTQEVPLEKAKQVLKIISSYKHTTSIFDDFAHYEKRQ 543

Homo sapiens (taxid: 9606)

>sp|Q8BYK6|YTHD3_MOUSE YTH domain family protein 3 OS=Mus musculus GN=Ythdf3 PE=1 SV=2

 Score =  189 bits (480), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 93/192 (48%), Positives = 120/192 (62%), Gaps = 7/192 (3%)

Query: 258 SASLEISDKKEVLSPTVSRDQYNLPDFQVEYEKAKFYVIKSYSEDDIHKCIKYDVWSSTP 317
           SAS    +   VL    + + YN  DF    +  + ++IKSYSEDDIH+ IKY +W ST 
Sbjct: 383 SASPSSVEVHPVLEKLKAINNYNPKDFDWNLKNGRVFIIKSYSEDDIHRSIKYSIWCSTE 442

Query: 318 NGNKKLDATFNEAEAKADETGTRCPIFLFFSVNGSGQFVGLAEMMGKVDFNKDMDFWQLD 377
           +GNK+LDA +     K        P++L FSVNGSG F G+AEM   VD+N     W  D
Sbjct: 443 HGNKRLDAAYRSLNGKG-------PLYLLFSVNGSGHFCGVAEMKSVVDYNAYAGVWSQD 495

Query: 378 KWNGFFPVKWHVIKDVPNTLLRHITLENNENKPVTHSRDTQEIGLKQGLEMLKIFKSYSA 437
           KW G F VKW  +KDVPN  LRHI LENN+NKPVT+SRDTQE+ L++  ++LKI  ++  
Sbjct: 496 KWKGKFEVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKIIATFKH 555

Query: 438 KTSLLDDFNFYE 449
            TS+ DDF  YE
Sbjct: 556 TTSIFDDFAHYE 567

Mus musculus (taxid: 10090)

>sp|Q5RFL8|YTHD3_PONAB YTH domain family protein 3 OS=Pongo abelii GN=YTHDF3 PE=2 SV=1

 Score =  189 bits (479), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 93/192 (48%), Positives = 120/192 (62%), Gaps = 7/192 (3%)

Query: 258 SASLEISDKKEVLSPTVSRDQYNLPDFQVEYEKAKFYVIKSYSEDDIHKCIKYDVWSSTP 317
           SAS    +   VL    + + YN  DF    +  + ++IKSYSEDDIH+ IKY +W ST 
Sbjct: 383 SASPSSVEVHPVLEKLKAINNYNPKDFDWNLKNGRVFIIKSYSEDDIHRSIKYSIWCSTE 442

Query: 318 NGNKKLDATFNEAEAKADETGTRCPIFLFFSVNGSGQFVGLAEMMGKVDFNKDMDFWQLD 377
           +GNK+LDA +     K        P++L FSVNGSG F G+AEM   VD+N     W  D
Sbjct: 443 HGNKRLDAAYRSLNGKG-------PLYLLFSVNGSGHFCGVAEMKSVVDYNAYAGVWSQD 495

Query: 378 KWNGFFPVKWHVIKDVPNTLLRHITLENNENKPVTHSRDTQEIGLKQGLEMLKIFKSYSA 437
           KW G F VKW  +KDVPN  LRHI LENN+NKPVT+SRDTQE+ L++  ++LKI  ++  
Sbjct: 496 KWKGKFEVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKIIATFKH 555

Query: 438 KTSLLDDFNFYE 449
            TS+ DDF  YE
Sbjct: 556 TTSIFDDFAHYE 567

Pongo abelii (taxid: 9601)

>sp|Q7Z739|YTHD3_HUMAN YTH domain family protein 3 OS=Homo sapiens GN=YTHDF3 PE=1 SV=1

 Score =  189 bits (479), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 93/192 (48%), Positives = 120/192 (62%), Gaps = 7/192 (3%)

Query: 258 SASLEISDKKEVLSPTVSRDQYNLPDFQVEYEKAKFYVIKSYSEDDIHKCIKYDVWSSTP 317
           SAS    +   VL    + + YN  DF    +  + ++IKSYSEDDIH+ IKY +W ST 
Sbjct: 383 SASPSSVEVHPVLEKLKAINNYNPKDFDWNLKNGRVFIIKSYSEDDIHRSIKYSIWCSTE 442

Query: 318 NGNKKLDATFNEAEAKADETGTRCPIFLFFSVNGSGQFVGLAEMMGKVDFNKDMDFWQLD 377
           +GNK+LDA +     K        P++L FSVNGSG F G+AEM   VD+N     W  D
Sbjct: 443 HGNKRLDAAYRSLNGKG-------PLYLLFSVNGSGHFCGVAEMKSVVDYNAYAGVWSQD 495

Query: 378 KWNGFFPVKWHVIKDVPNTLLRHITLENNENKPVTHSRDTQEIGLKQGLEMLKIFKSYSA 437
           KW G F VKW  +KDVPN  LRHI LENN+NKPVT+SRDTQE+ L++  ++LKI  ++  
Sbjct: 496 KWKGKFEVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKIIATFKH 555

Query: 438 KTSLLDDFNFYE 449
            TS+ DDF  YE
Sbjct: 556 TTSIFDDFAHYE 567

Homo sapiens (taxid: 9606)

>sp|Q06390|YD374_YEAST YTH domain-containing protein YDR374C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YDR374C PE=4 SV=1

 Score =  108 bits (269), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 57/158 (36%), Positives = 93/158 (58%), Gaps = 9/158 (5%)

Query: 289 EKAKFYVIKSYSEDDIHKCIKYDVWSSTPNGNKKLDATFNEAEAKADETGTRCPIFLFFS 348
           E ++F+VIKS S   + +     +WSST  GNK+L   + +  + A        +FLFFS
Sbjct: 153 ENSRFFVIKSSSLKHVKRSFYNGIWSSTHFGNKRLSEAYKKLNSGA-------KVFLFFS 205

Query: 349 VNGSGQFVGLAEMMGKVDFNKDMDFWQLD-KWNGFFPVKWHVIKDVPNTLLRHITLENNE 407
           +N SG+F G+AEM+  +  + D   W+ + K+   F V+W +++D+ N  L+   + +NE
Sbjct: 206 INTSGRFCGVAEMVSDLKMDLDTSIWEDEQKYGKAFKVRWVIVRDINNRSLKRFLIPSNE 265

Query: 408 NKPVTHSRDTQEIGLKQGLEMLKIFKSYSAKT-SLLDD 444
            KP+THSRDTQEI    G+ ++ +FK+  +   S LD+
Sbjct: 266 MKPITHSRDTQEIPYSIGISIINLFKTQDSDIFSFLDE 303

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q9QY02|YTDC1_RAT YTH domain-containing protein 1 OS=Rattus norvegicus GN=Ythdc1 PE=1 SV=1

 Score = 71.2 bits (173), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 69/148 (46%), Gaps = 16/148 (10%)

Query: 291 AKFYVIKSYSEDDIHKCIKYDVWSSTPNGNKKLDATFNEAEAKADETGTRCPIFLFFSVN 350
           A+F++IKS + +++       VWS+ P   KKL+  F  A +          + L FSV 
Sbjct: 358 ARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSARS----------VILIFSVR 407

Query: 351 GSGQFVGLAEMMGKVDFNKDMDFWQL------DKWNGFFPVKWHVIKDVPNTLLRHITLE 404
            SG+F G A +  +         W L          G F + W   +++P T   H+T  
Sbjct: 408 ESGKFQGFARLSSESHHGGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNP 467

Query: 405 NNENKPVTHSRDTQEIGLKQGLEMLKIF 432
            NE+KPV   RD QEI L+ G ++  +F
Sbjct: 468 WNEHKPVKIGRDGQEIELECGTQLCLLF 495

May be part of a signal transduction pathway that influences splice site selection.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	528
255571002	582	yth domain-containing protein, putative	0.969	0.879	0.627	1e-179
297739524	708	unnamed protein product [Vitis vinifera]	0.971	0.724	0.600	1e-175
225448124	608	PREDICTED: uncharacterized protein LOC10	0.971	0.843	0.600	1e-174
147812480	812	hypothetical protein VITISV_026284 [Viti	0.910	0.592	0.615	1e-169
224119982	410	predicted protein [Populus trichocarpa]	0.75	0.965	0.648	1e-147
224129680	350	predicted protein [Populus trichocarpa]	0.626	0.945	0.623	1e-117
357445299	558	YTH domain family protein [Medicago trun	0.785	0.743	0.487	1e-107
357445301	547	YTH domain family protein [Medicago trun	0.785	0.758	0.487	1e-107
140053520	455	YT521-B-like protein [Medicago truncatul	0.785	0.912	0.487	1e-107
357445303	512	YTH domain family protein [Medicago trun	0.785	0.810	0.487	1e-106

>gi|255571002|ref|XP_002526452.1| yth domain-containing protein, putative [Ricinus communis] gi|223534232|gb|EEF35947.1| yth domain-containing protein, putative [Ricinus communis]

 Score =  634 bits (1634), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 334/532 (62%), Positives = 403/532 (75%), Gaps = 20/532 (3%)

Query: 9   SGMKGEIDQESVGEYGAQNPSTVHYNYYYPGSNGSFSQVDNNGYIHTDGSHSGVHSDNGS 68
           S +KGE D+ESVG     NP T +YNYYYPG NG F Q+D++GY   DGSH G+ SDNGS
Sbjct: 59  SSIKGEADKESVGVQNIYNPPTSNYNYYYPGYNGPFPQLDDHGYFQADGSHVGMQSDNGS 118

Query: 69  LLYYLPGYDPYST--LVGVDGQCVGQQPYFSSSGYLQHPVSYGSEVMPCYSWDSTYVADI 126
           ++YYLPGY+PY++  L+GV+GQ +GQQPYFSSSGYLQHPVSYGS  +PCYSWDSTY  D+
Sbjct: 119 VVYYLPGYNPYASGALIGVEGQSIGQQPYFSSSGYLQHPVSYGSAAVPCYSWDSTYAGDV 178

Query: 127 QNGNAVGFGNEKYGGSTAFAKSNGLNSVKKNGCFTNKVSKSSYTQSTKPVSKVTQLDSDL 186
            NG+A  FGN KYG     AKSNGLNS+K NG    K SKS+Y Q  +P++KV+ L SD 
Sbjct: 179 SNGSAA-FGNGKYGS----AKSNGLNSMKSNGNIGGKSSKSNYMQPNRPLNKVSPLGSDF 233

Query: 187 SAGFLKGSNPLGNFSAFSNQKQGFFPN--MVNYSTNGRMWNGNDRYKSRDKFSRAGGLGM 244
           SAG +KG + +GNFS+FS  KQG   +   +NY  NGRMWNGNDR + RDKF +      
Sbjct: 234 SAGLMKGYHHVGNFSSFSAHKQGPLSHNGTMNYRQNGRMWNGNDRNRPRDKFYKTNDFEA 293

Query: 245 PTELIRGPRAENKSASLEISDKKEVLSPTVSRDQYNLPDFQVEYEKAKFYVIKSYSEDDI 304
            +EL  GPRA NK + L+ S  KE L+ TV RDQYN  DF+ EY+ AKFYVIKSY+EDDI
Sbjct: 294 SSELTCGPRASNKISPLD-SSAKEDLAFTVCRDQYNQADFKTEYKNAKFYVIKSYNEDDI 352

Query: 305 HKCIKYDVWSSTPNGNKKLDATFNEAEAKADETGTRCPIFLFFSVNGSGQFVGLAEMMGK 364
           HK IKY VW+STPNGNKKLDA F EAE ++ ETGT+CPIFLFFSVNGSGQFVGLAEM+G+
Sbjct: 353 HKSIKYAVWASTPNGNKKLDAAFCEAEQRSSETGTKCPIFLFFSVNGSGQFVGLAEMVGQ 412

Query: 365 VDFNKDMDFWQLDKWNGFFPVKWHVIKDVPNTLLRHITLENNENKPVTHSRDTQEIGLKQ 424
           VDF KDMDFWQLDKW+GFFPVKWHVIKD+PN  LRHI LENN+ +PVT SRDTQEIG +Q
Sbjct: 413 VDFEKDMDFWQLDKWSGFFPVKWHVIKDIPNNQLRHIILENNDKRPVTFSRDTQEIGFEQ 472

Query: 425 GLEMLKIFKSYSAKTSLLDDFNFYENKERSFHGKKSSKPATLQMDIFNDDDFTKQIKSAE 484
           GLEML IFK YS+K SLLDDFNFYEN+E S   +KS+K ATL+M+I N+ DF K  KS E
Sbjct: 473 GLEMLNIFKGYSSKASLLDDFNFYENRETSVD-RKSNKLATLRMEINNNGDFPKHPKSGE 531

Query: 485 KEFDEDSI--------SIINLTKNLSLKPCTQKKSEAVKNPVEKAIPSVIAP 528
           ++ +E+S         S+INLTKNLSL   +Q KS ++K P+E +IP+  +P
Sbjct: 532 RKHEEESWTKKTSNPSSLINLTKNLSLNGYSQ-KSNSIKKPIENSIPAAASP 582

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297739524|emb|CBI29706.3| unnamed protein product [Vitis vinifera]

 Score =  620 bits (1600), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 329/548 (60%), Positives = 400/548 (72%), Gaps = 35/548 (6%)

Query: 5   GHAASGMKGEIDQESVGEYGAQNPSTVHYNYYYPGSNGSFSQVDNNGYIHTDGSHSGVHS 64
           G A + +KGE DQESV E G   P T  YNYYYPG NG+ +Q D++GY + DGS++GV S
Sbjct: 149 GDATASVKGETDQESVAEQGVYYPPTSCYNYYYPGYNGALNQSDDHGYYNADGSYTGVQS 208

Query: 65  DNGSLLYYLPGYDPYS--TLVGVDGQCVGQQPYFSSSGYLQHPVSYGSEVMPCYSWDSTY 122
           DNG ++YYLPGY+PY+  TL+GVDGQCV Q PYFSS GYLQ PV YG+E +PCYSWDSTY
Sbjct: 209 DNG-MVYYLPGYNPYASGTLMGVDGQCVSQPPYFSS-GYLQQPVPYGTEAVPCYSWDSTY 266

Query: 123 VADIQNGNAVGFGNEKYGGS-TAFAKSNGLNSVKKNGCFTNK-----------------V 164
           V D  NG    FGN K G   TA AK+N   S+K NG   NK                  
Sbjct: 267 VGDAANGTNANFGNIKSGSRPTASAKANNFPSMKANGTVANKYSLPFDSKSHQSAAPSNF 326

Query: 165 SKSSY-TQSTKPVSKVTQLDSDLSAGFLKGSNPLGNFSAFSNQKQGFFPN--MVNYSTNG 221
           SKS + +Q  KP++K + L SD  AGF KG NP+  FS+F+NQKQGFFP+  ++NY  N 
Sbjct: 327 SKSIFQSQPLKPLNKASHLGSDFPAGFAKGFNPVSKFSSFTNQKQGFFPHNGVMNYRPNS 386

Query: 222 RMWNGNDRYKSRDKFSRAGGLGMPTELIRGPRAENKSASLEISDKKEVLSPTVSRDQYNL 281
           R WNGN++YK R+K +R G     TEL  GPRA N++A L  + +KE L   V RDQYNL
Sbjct: 387 RAWNGNEKYKLREKSNRNGHFESSTELTCGPRARNRNAPLNSATEKEELGLMVRRDQYNL 446

Query: 282 PDFQVEYEKAKFYVIKSYSEDDIHKCIKYDVWSSTPNGNKKLDATFNEAEAKADETGTRC 341
            DFQ EYE AKFYVIKS+SEDDIHKCIKYDVW+STPNGNKKLDA F++AEAKA+ETGT+ 
Sbjct: 447 QDFQTEYENAKFYVIKSFSEDDIHKCIKYDVWASTPNGNKKLDAAFHDAEAKANETGTKF 506

Query: 342 PIFLFFSVNGSGQFVGLAEMMGKVDFNKDMDFWQLDKWNGFFPVKWHVIKDVPNTLLRHI 401
           PIFLFFSVNGSGQFVG+AEM+G+VDFNKDMDFWQLDKWNGFFPVKWH++KD+PN+ LRHI
Sbjct: 507 PIFLFFSVNGSGQFVGVAEMVGQVDFNKDMDFWQLDKWNGFFPVKWHIVKDIPNSQLRHI 566

Query: 402 TLENNENKPVTHSRDTQEIGLKQGLEMLKIFKSYSAKTSLLDDFNFYENKERSFHGKKSS 461
           TLE+NEN+ VT++RDTQEIGLKQG+EMLKIFK+YSA+TS+ DDFNFYEN+E+S H ++SS
Sbjct: 567 TLESNENRSVTYTRDTQEIGLKQGVEMLKIFKNYSARTSMFDDFNFYENREKSLHARRSS 626

Query: 462 KPATL-QMDIFND-DDFTKQIKSAEKEFDE--------DSISIINLTKNLSLKPCTQKKS 511
           KP    QM+I+   DD  K +   E++ +E        D  S+INLTKNLSL      K+
Sbjct: 627 KPPPPSQMEIYGSGDDLPKHLHGEERKTEEPARTSRSHDPKSLINLTKNLSLSTPHPPKN 686

Query: 512 EAVKNPVE 519
            +  NP E
Sbjct: 687 SSGLNPTE 694

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225448124|ref|XP_002262918.1| PREDICTED: uncharacterized protein LOC100249242 [Vitis vinifera]

 Score =  619 bits (1595), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 329/548 (60%), Positives = 400/548 (72%), Gaps = 35/548 (6%)

Query: 5   GHAASGMKGEIDQESVGEYGAQNPSTVHYNYYYPGSNGSFSQVDNNGYIHTDGSHSGVHS 64
           G A + +KGE DQESV E G   P T  YNYYYPG NG+ +Q D++GY + DGS++GV S
Sbjct: 49  GDATASVKGETDQESVAEQGVYYPPTSCYNYYYPGYNGALNQSDDHGYYNADGSYTGVQS 108

Query: 65  DNGSLLYYLPGYDPYS--TLVGVDGQCVGQQPYFSSSGYLQHPVSYGSEVMPCYSWDSTY 122
           DNG ++YYLPGY+PY+  TL+GVDGQCV Q PYFSS GYLQ PV YG+E +PCYSWDSTY
Sbjct: 109 DNG-MVYYLPGYNPYASGTLMGVDGQCVSQPPYFSS-GYLQQPVPYGTEAVPCYSWDSTY 166

Query: 123 VADIQNGNAVGFGNEKYGGS-TAFAKSNGLNSVKKNGCFTNK-----------------V 164
           V D  NG    FGN K G   TA AK+N   S+K NG   NK                  
Sbjct: 167 VGDAANGTNANFGNIKSGSRPTASAKANNFPSMKANGTVANKYSLPFDSKSHQSAAPSNF 226

Query: 165 SKSSY-TQSTKPVSKVTQLDSDLSAGFLKGSNPLGNFSAFSNQKQGFFPN--MVNYSTNG 221
           SKS + +Q  KP++K + L SD  AGF KG NP+  FS+F+NQKQGFFP+  ++NY  N 
Sbjct: 227 SKSIFQSQPLKPLNKASHLGSDFPAGFAKGFNPVSKFSSFTNQKQGFFPHNGVMNYRPNS 286

Query: 222 RMWNGNDRYKSRDKFSRAGGLGMPTELIRGPRAENKSASLEISDKKEVLSPTVSRDQYNL 281
           R WNGN++YK R+K +R G     TEL  GPRA N++A L  + +KE L   V RDQYNL
Sbjct: 287 RAWNGNEKYKLREKSNRNGHFESSTELTCGPRARNRNAPLNSATEKEELGLMVRRDQYNL 346

Query: 282 PDFQVEYEKAKFYVIKSYSEDDIHKCIKYDVWSSTPNGNKKLDATFNEAEAKADETGTRC 341
            DFQ EYE AKFYVIKS+SEDDIHKCIKYDVW+STPNGNKKLDA F++AEAKA+ETGT+ 
Sbjct: 347 QDFQTEYENAKFYVIKSFSEDDIHKCIKYDVWASTPNGNKKLDAAFHDAEAKANETGTKF 406

Query: 342 PIFLFFSVNGSGQFVGLAEMMGKVDFNKDMDFWQLDKWNGFFPVKWHVIKDVPNTLLRHI 401
           PIFLFFSVNGSGQFVG+AEM+G+VDFNKDMDFWQLDKWNGFFPVKWH++KD+PN+ LRHI
Sbjct: 407 PIFLFFSVNGSGQFVGVAEMVGQVDFNKDMDFWQLDKWNGFFPVKWHIVKDIPNSQLRHI 466

Query: 402 TLENNENKPVTHSRDTQEIGLKQGLEMLKIFKSYSAKTSLLDDFNFYENKERSFHGKKSS 461
           TLE+NEN+ VT++RDTQEIGLKQG+EMLKIFK+YSA+TS+ DDFNFYEN+E+S H ++SS
Sbjct: 467 TLESNENRSVTYTRDTQEIGLKQGVEMLKIFKNYSARTSMFDDFNFYENREKSLHARRSS 526

Query: 462 KPATL-QMDIFND-DDFTKQIKSAEKEFDE--------DSISIINLTKNLSLKPCTQKKS 511
           KP    QM+I+   DD  K +   E++ +E        D  S+INLTKNLSL      K+
Sbjct: 527 KPPPPSQMEIYGSGDDLPKHLHGEERKTEEPARTSRSHDPKSLINLTKNLSLSTPHPPKN 586

Query: 512 EAVKNPVE 519
            +  NP E
Sbjct: 587 SSGLNPTE 594

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147812480|emb|CAN72774.1| hypothetical protein VITISV_026284 [Vitis vinifera]

 Score =  600 bits (1547), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 312/507 (61%), Positives = 380/507 (74%), Gaps = 26/507 (5%)

Query: 5   GHAASGMKGEIDQESVGEYGAQNPSTVHYNYYYPGSNGSFSQVDNNGYIHTDGSHSGVHS 64
           G A + +KGE DQESV E G   P T  YNYYYPG NG+ +Q D++GY + DGS++GV S
Sbjct: 52  GDATASVKGETDQESVAEQGVYYPPTSCYNYYYPGYNGALNQSDDHGYYNADGSYTGVQS 111

Query: 65  DNGSLLYYLPGYDPYS--TLVGVDGQCVGQQPYFSSSGYLQHPVSYGSEVMPCYSWDSTY 122
           DNG ++YYLPGY+PY+  TL+GVDGQCV Q PYFSS GYLQ PV YG+E +PCYSWDSTY
Sbjct: 112 DNG-MVYYLPGYNPYASGTLMGVDGQCVSQPPYFSS-GYLQQPVPYGTEAVPCYSWDSTY 169

Query: 123 VADIQNGNAVGFGNEKYGGS-TAFAKSNGLNSVKKNGCFTNK-----------------V 164
           V D  NG    FGN K G   TA AK+N   S+K NG   NK                  
Sbjct: 170 VGDAANGTNANFGNIKSGSRPTASAKANNFPSMKANGTVANKYSLPFDSKSRXSAAPSNF 229

Query: 165 SKSSY-TQSTKPVSKVTQLDSDLSAGFLKGSNPLGNFSAFSNQKQGFFPN--MVNYSTNG 221
           SKS + +Q  KP++K + L SD  AGF KG NP+  FS+F+NQKQGFFP+  ++NY  N 
Sbjct: 230 SKSIFQSQPLKPLNKASHLGSDFPAGFAKGFNPVSKFSSFTNQKQGFFPHNGVMNYRPNS 289

Query: 222 RMWNGNDRYKSRDKFSRAGGLGMPTELIRGPRAENKSASLEISDKKEVLSPTVSRDQYNL 281
           R WNGN++YK R+K +R G     TEL  GPRA N+++ L  + +KE L   V RDQYNL
Sbjct: 290 RAWNGNEKYKLREKSNRNGHFESSTELTCGPRARNRNSPLNSATEKEELGLMVRRDQYNL 349

Query: 282 PDFQVEYEKAKFYVIKSYSEDDIHKCIKYDVWSSTPNGNKKLDATFNEAEAKADETGTRC 341
            DFQ EYE AKFYVIKS+SEDDIHKCIKYDVW+STPNGNKKLDA F++AEAKA+ETGT+ 
Sbjct: 350 QDFQTEYENAKFYVIKSFSEDDIHKCIKYDVWASTPNGNKKLDAAFHDAEAKANETGTKF 409

Query: 342 PIFLFFSVNGSGQFVGLAEMMGKVDFNKDMDFWQLDKWNGFFPVKWHVIKDVPNTLLRHI 401
           PIFLFFSVNGSGQFVG+AEM+G+VDFNKDMDFWQLDKWNGFFPVKWH++KD+PN+ LRHI
Sbjct: 410 PIFLFFSVNGSGQFVGVAEMVGQVDFNKDMDFWQLDKWNGFFPVKWHIVKDIPNSQLRHI 469

Query: 402 TLENNENKPVTHSRDTQEIGLKQGLEMLKIFKSYSAKTSLLDDFNFYENKERSFHGKKSS 461
           TLE+NEN+ VT++RDTQEIGLKQG+EMLKIFK+YSA+TS+ DDFNFYEN+E+S H ++SS
Sbjct: 470 TLESNENRSVTYTRDTQEIGLKQGVEMLKIFKNYSARTSMFDDFNFYENREKSLHARRSS 529

Query: 462 K-PATLQMDIFNDDDFTKQIKSAEKEF 487
           K P   QM+I+ + D       AE++F
Sbjct: 530 KPPPPSQMEIYGNGDDLPHPPPAEEQF 556

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119982|ref|XP_002331108.1| predicted protein [Populus trichocarpa] gi|222872836|gb|EEF09967.1| predicted protein [Populus trichocarpa]

 Score =  529 bits (1363), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 271/418 (64%), Positives = 312/418 (74%), Gaps = 22/418 (5%)

Query: 62  VHSDNGSLLYYLPGYDPYS--TLVGVDGQCVGQQPYFSSSGYLQHPVSYGSEVMPCYSWD 119
           + SDNGS++YY P Y PY+  T+VGVDGQ V QQPYFSSSGYLQHPVSYG E MPCYSWD
Sbjct: 1   MQSDNGSMVYYWPSY-PYASGTVVGVDGQSVAQQPYFSSSGYLQHPVSYGLEAMPCYSWD 59

Query: 120 STYVADIQNGNAVGFGNEKYG-GSTAFAKSNGLNSVKKNGCFTNKVSKSSYTQSTKPVSK 178
           S YV D+ NGNAV F N K G GSTAFA+SNG NS K NG   +K+SK  YTQ   P   
Sbjct: 60  SAYVGDVSNGNAV-FENGKGGSGSTAFAQSNGFNSTKSNGNIGSKISKPMYTQLVSPSG- 117

Query: 179 VTQLDSDLSAGFLKGSNPLGNFSAFSNQKQGFFPN--MVNYSTNGRMWNGNDRYKSRDKF 236
                SD SAG  KG  P+G F  F++QK G FP+   +NY  NGRMW GN R  SRD+F
Sbjct: 118 -----SDFSAGLFKGYQPMGKFPPFTSQKPGPFPHNGPLNYRQNGRMWTGNYRNISRDRF 172

Query: 237 SRAGGLGMPTELIRGPRAENKSASLEI---------SDKKEVLSPTVSRDQYNLPDFQVE 287
           ++       TEL RGPRA NK+A L++         S  K+ L   + ++QYNLPDF+ E
Sbjct: 173 NKNYDFENQTELTRGPRASNKNAPLDLLVNKNASLDSSVKDELGIAMRKEQYNLPDFETE 232

Query: 288 YEKAKFYVIKSYSEDDIHKCIKYDVWSSTPNGNKKLDATFNEAEAKADETGTRCPIFLFF 347
           Y  AKF+VIKSYSEDDIHK IKYDVW+STPNGNKKLDA F+ AE  + +TG +CPIFLFF
Sbjct: 233 YANAKFFVIKSYSEDDIHKSIKYDVWASTPNGNKKLDAAFHNAEEVSSDTGYKCPIFLFF 292

Query: 348 SVNGSGQFVGLAEMMGKVDFNKDMDFWQLDKWNGFFPVKWHVIKDVPNTLLRHITLENNE 407
           SVNGSGQFVG AEM+G+VDFNKDMDFWQ+DKWNGFFPVKWHV+KD+PN  LRHI LENN+
Sbjct: 293 SVNGSGQFVGFAEMVGQVDFNKDMDFWQIDKWNGFFPVKWHVVKDIPNGHLRHIVLENND 352

Query: 408 NKPVTHSRDTQEIGLKQGLEMLKIFKSYSAKTSLLDDFNFYENKERSFHGKKSSKPAT 465
              VT SRDTQEI LKQGLEML IFKSYSAKTSLLDDFNFYE +E+S + KK +KPAT
Sbjct: 353 GHSVTFSRDTQEIVLKQGLEMLNIFKSYSAKTSLLDDFNFYEKREKSLNTKKGNKPAT 410

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224129680|ref|XP_002328776.1| predicted protein [Populus trichocarpa] gi|222839074|gb|EEE77425.1| predicted protein [Populus trichocarpa]

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 219/351 (62%), Positives = 263/351 (74%), Gaps = 20/351 (5%)

Query: 197 LGNFSAFSNQKQGFFPNM--VNYSTNGRMWNGNDRYKSRDKFSRAGGLGMPTELIRGPRA 254
           +G F  F+ QKQG FP+   +NY  N RMWNGN R K RD+F+R G     TEL RGPRA
Sbjct: 1   MGKFPPFTGQKQGPFPHSGPLNYRQNVRMWNGNYRNKPRDRFNRNGDFENQTELTRGPRA 60

Query: 255 ENKSASLEISDK---------KEVLSPTVSRDQYNLPDFQVEYEKAKFYVIKSYSEDDIH 305
             K+A L+ S K         K++L   + ++QYNLPDF++EY  AKF+VIKSY+EDDIH
Sbjct: 61  SIKNAPLDDSVKNNAPLDSSVKDMLGFAMHKEQYNLPDFEIEYSNAKFFVIKSYNEDDIH 120

Query: 306 KCIKYDVWSSTPNGNKKLDATFNEAEAKADETGTRCPIFLFFSVNGSGQFVGLAEMMGKV 365
           K IKYDVW+STPNGNKKLDA F+ AE  + ETGT+CPIFLFFSVNGSGQFVGLAEM+G+V
Sbjct: 121 KSIKYDVWASTPNGNKKLDAAFHNAEEVSSETGTKCPIFLFFSVNGSGQFVGLAEMVGQV 180

Query: 366 DFNKDMDFWQLDKWNGFFPVKWHVIKDVPNTLLRHITLENNENKPVTHSRDTQEIGLKQG 425
           DFNKDMDFWQ+DKWNGFFPVKWHVIKD+PN  LRHI LENN+   VT SRDTQEIGL++G
Sbjct: 181 DFNKDMDFWQIDKWNGFFPVKWHVIKDIPNGQLRHIVLENNDGHSVTFSRDTQEIGLEKG 240

Query: 426 LEMLKIFKSYSAKTSLLDDFNFYENKERSFHGKKSSKPATLQMDIFNDDDFTKQIKSAEK 485
           LEML IFKSYSAKTS+LDDFNFYEN+E+S + KKS+KPATL+M+IF + DF K   + EK
Sbjct: 241 LEMLNIFKSYSAKTSMLDDFNFYENREKSLNTKKSNKPATLRMEIFENSDFPKHTAAEEK 300

Query: 486 EFDEDSI--------SIINLTKNLSLKPCTQKKSEAVKNPVEKAIPSVIAP 528
             ++DS         ++INLTKNLSL    Q KS +VK P+  +   V AP
Sbjct: 301 ISEDDSRAKKTTNPSTLINLTKNLSLNGHNQ-KSNSVKKPIGNSASPVPAP 350

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357445299|ref|XP_003592927.1| YTH domain family protein [Medicago truncatula] gi|355481975|gb|AES63178.1| YTH domain family protein [Medicago truncatula]

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 220/451 (48%), Positives = 284/451 (62%), Gaps = 36/451 (7%)

Query: 81  TLVGVDGQCV-----GQQPYFSSSGYLQHPVSYGSEVMPCYSWDSTYVADIQNGNAVGFG 135
           T VGVD  C+     GQQP  S + Y Q P  + SE +PC+S  ST V  +QN +     
Sbjct: 106 TNVGVDRHCIIRELPGQQPGLSYTSYFQQPGVHESEAIPCHSSVSTSVC-MQNKSVSSVF 164

Query: 136 NEKYGGSTAFAKSNGLNSVKKNGCFTNKVSKSSYTQSTKPVSKVTQLDSDLS-AGFLKGS 194
            +    S+  A  N  +S   NG  T+++SK       + + K   L S+ + A   +  
Sbjct: 165 AKSDPKSSTLANQNSSSSPHTNGSITSRLSKE-----IEILKKAPHLHSNFTVATPPRTY 219

Query: 195 NPLGNFSAFSNQKQGFFPNM---------------VNYSTNGRMWNGNDRYKSRDKFSRA 239
           N  GN  +F+N +   FPN                 NY  NG +   NDR    +KF R+
Sbjct: 220 NQTGNVPSFANPRSHVFPNTNYRPSTSTNYRPITSTNYRPNGAV--SNDRVMLSEKF-RS 276

Query: 240 GGLGMPTELIRGPRAENKSASLEISDKKEVLSPTVSRDQYNLPDFQVEYEKAKFYVIKSY 299
           G   M  E+ RGPR   ++++ E S  K+  + TV RDQYNLPDFQ +YE AKFY+IKS+
Sbjct: 277 GESEMSKEITRGPRFHQRNSNPESSVVKDEFAFTVCRDQYNLPDFQTKYETAKFYMIKSF 336

Query: 300 SEDDIHKCIKYDVWSSTPNGNKKLDATFNEAEAKADETGTRCPIFLFFSVNGSGQFVGLA 359
           +EDDIHK IKYDVW+STP+GNKKL+A F  AEAK  +TGT+CPIFLFFSVN SGQFVG+A
Sbjct: 337 NEDDIHKGIKYDVWTSTPHGNKKLNAAFQNAEAKLSQTGTQCPIFLFFSVNASGQFVGVA 396

Query: 360 EMMGKVDFNKDMDFWQLDKWNGFFPVKWHVIKDVPNTLLRHITLENNENKPVTHSRDTQE 419
           EM+G VDF KDM FW+LDK+NGFFP+KWH+IKDVPN    HITL+ NENK VT SRDTQE
Sbjct: 397 EMLGPVDFKKDMKFWKLDKYNGFFPIKWHIIKDVPNRQFAHITLQINENKCVTFSRDTQE 456

Query: 420 IGLKQGLEMLKIFKSYSAKTSLLDDFNFYENKERSFHGKKSSKPATLQMDIFNDDDFTKQ 479
           I LK+GLEMLKIFKSY AKTSLLDDF+FYEN+E+    +++      Q + +N+D +   
Sbjct: 457 ITLKEGLEMLKIFKSYPAKTSLLDDFDFYENREKLCRSQRTEHTGWKQ-EAYNNDSYHNT 515

Query: 480 IKSAEKEFDEDSI-----SIINLTKNLSLKP 505
           +K+ EK  +  S      +++NLTKNLSL P
Sbjct: 516 MKAREKRIEMQSSGTNQETLVNLTKNLSLNP 546

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357445301|ref|XP_003592928.1| YTH domain family protein [Medicago truncatula] gi|355481976|gb|AES63179.1| YTH domain family protein [Medicago truncatula]

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 220/451 (48%), Positives = 284/451 (62%), Gaps = 36/451 (7%)

Query: 81  TLVGVDGQCV-----GQQPYFSSSGYLQHPVSYGSEVMPCYSWDSTYVADIQNGNAVGFG 135
           T VGVD  C+     GQQP  S + Y Q P  + SE +PC+S  ST V  +QN +     
Sbjct: 95  TNVGVDRHCIIRELPGQQPGLSYTSYFQQPGVHESEAIPCHSSVSTSVC-MQNKSVSSVF 153

Query: 136 NEKYGGSTAFAKSNGLNSVKKNGCFTNKVSKSSYTQSTKPVSKVTQLDSDLS-AGFLKGS 194
            +    S+  A  N  +S   NG  T+++SK       + + K   L S+ + A   +  
Sbjct: 154 AKSDPKSSTLANQNSSSSPHTNGSITSRLSKE-----IEILKKAPHLHSNFTVATPPRTY 208

Query: 195 NPLGNFSAFSNQKQGFFPNM---------------VNYSTNGRMWNGNDRYKSRDKFSRA 239
           N  GN  +F+N +   FPN                 NY  NG +   NDR    +KF R+
Sbjct: 209 NQTGNVPSFANPRSHVFPNTNYRPSTSTNYRPITSTNYRPNGAV--SNDRVMLSEKF-RS 265

Query: 240 GGLGMPTELIRGPRAENKSASLEISDKKEVLSPTVSRDQYNLPDFQVEYEKAKFYVIKSY 299
           G   M  E+ RGPR   ++++ E S  K+  + TV RDQYNLPDFQ +YE AKFY+IKS+
Sbjct: 266 GESEMSKEITRGPRFHQRNSNPESSVVKDEFAFTVCRDQYNLPDFQTKYETAKFYMIKSF 325

Query: 300 SEDDIHKCIKYDVWSSTPNGNKKLDATFNEAEAKADETGTRCPIFLFFSVNGSGQFVGLA 359
           +EDDIHK IKYDVW+STP+GNKKL+A F  AEAK  +TGT+CPIFLFFSVN SGQFVG+A
Sbjct: 326 NEDDIHKGIKYDVWTSTPHGNKKLNAAFQNAEAKLSQTGTQCPIFLFFSVNASGQFVGVA 385

Query: 360 EMMGKVDFNKDMDFWQLDKWNGFFPVKWHVIKDVPNTLLRHITLENNENKPVTHSRDTQE 419
           EM+G VDF KDM FW+LDK+NGFFP+KWH+IKDVPN    HITL+ NENK VT SRDTQE
Sbjct: 386 EMLGPVDFKKDMKFWKLDKYNGFFPIKWHIIKDVPNRQFAHITLQINENKCVTFSRDTQE 445

Query: 420 IGLKQGLEMLKIFKSYSAKTSLLDDFNFYENKERSFHGKKSSKPATLQMDIFNDDDFTKQ 479
           I LK+GLEMLKIFKSY AKTSLLDDF+FYEN+E+    +++      Q + +N+D +   
Sbjct: 446 ITLKEGLEMLKIFKSYPAKTSLLDDFDFYENREKLCRSQRTEHTGWKQ-EAYNNDSYHNT 504

Query: 480 IKSAEKEFDEDSI-----SIINLTKNLSLKP 505
           +K+ EK  +  S      +++NLTKNLSL P
Sbjct: 505 MKAREKRIEMQSSGTNQETLVNLTKNLSLNP 535

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|140053520|gb|ABO80468.1| YT521-B-like protein [Medicago truncatula]

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 220/451 (48%), Positives = 284/451 (62%), Gaps = 36/451 (7%)

Query: 81  TLVGVDGQCV-----GQQPYFSSSGYLQHPVSYGSEVMPCYSWDSTYVADIQNGNAVGFG 135
           T VGVD  C+     GQQP  S + Y Q P  + SE +PC+S  ST V  +QN +     
Sbjct: 3   TNVGVDRHCIIRELPGQQPGLSYTSYFQQPGVHESEAIPCHSSVSTSVC-MQNKSVSSVF 61

Query: 136 NEKYGGSTAFAKSNGLNSVKKNGCFTNKVSKSSYTQSTKPVSKVTQLDSDLS-AGFLKGS 194
            +    S+  A  N  +S   NG  T+++SK       + + K   L S+ + A   +  
Sbjct: 62  AKSDPKSSTLANQNSSSSPHTNGSITSRLSKE-----IEILKKAPHLHSNFTVATPPRTY 116

Query: 195 NPLGNFSAFSNQKQGFFPNM---------------VNYSTNGRMWNGNDRYKSRDKFSRA 239
           N  GN  +F+N +   FPN                 NY  NG +   NDR    +KF R+
Sbjct: 117 NQTGNVPSFANPRSHVFPNTNYRPSTSTNYRPITSTNYRPNGAV--SNDRVMLSEKF-RS 173

Query: 240 GGLGMPTELIRGPRAENKSASLEISDKKEVLSPTVSRDQYNLPDFQVEYEKAKFYVIKSY 299
           G   M  E+ RGPR   ++++ E S  K+  + TV RDQYNLPDFQ +YE AKFY+IKS+
Sbjct: 174 GESEMSKEITRGPRFHQRNSNPESSVVKDEFAFTVCRDQYNLPDFQTKYETAKFYMIKSF 233

Query: 300 SEDDIHKCIKYDVWSSTPNGNKKLDATFNEAEAKADETGTRCPIFLFFSVNGSGQFVGLA 359
           +EDDIHK IKYDVW+STP+GNKKL+A F  AEAK  +TGT+CPIFLFFSVN SGQFVG+A
Sbjct: 234 NEDDIHKGIKYDVWTSTPHGNKKLNAAFQNAEAKLSQTGTQCPIFLFFSVNASGQFVGVA 293

Query: 360 EMMGKVDFNKDMDFWQLDKWNGFFPVKWHVIKDVPNTLLRHITLENNENKPVTHSRDTQE 419
           EM+G VDF KDM FW+LDK+NGFFP+KWH+IKDVPN    HITL+ NENK VT SRDTQE
Sbjct: 294 EMLGPVDFKKDMKFWKLDKYNGFFPIKWHIIKDVPNRQFAHITLQINENKCVTFSRDTQE 353

Query: 420 IGLKQGLEMLKIFKSYSAKTSLLDDFNFYENKERSFHGKKSSKPATLQMDIFNDDDFTKQ 479
           I LK+GLEMLKIFKSY AKTSLLDDF+FYEN+E+    +++      Q + +N+D +   
Sbjct: 354 ITLKEGLEMLKIFKSYPAKTSLLDDFDFYENREKLCRSQRTEHTGWKQ-EAYNNDSYHNT 412

Query: 480 IKSAEKEFDEDSI-----SIINLTKNLSLKP 505
           +K+ EK  +  S      +++NLTKNLSL P
Sbjct: 413 MKAREKRIEMQSSGTNQETLVNLTKNLSLNP 443

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357445303|ref|XP_003592929.1| YTH domain family protein [Medicago truncatula] gi|355481977|gb|AES63180.1| YTH domain family protein [Medicago truncatula]

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 220/451 (48%), Positives = 284/451 (62%), Gaps = 36/451 (7%)

Query: 81  TLVGVDGQCV-----GQQPYFSSSGYLQHPVSYGSEVMPCYSWDSTYVADIQNGNAVGFG 135
           T VGVD  C+     GQQP  S + Y Q P  + SE +PC+S  ST V  +QN +     
Sbjct: 60  TNVGVDRHCIIRELPGQQPGLSYTSYFQQPGVHESEAIPCHSSVSTSVC-MQNKSVSSVF 118

Query: 136 NEKYGGSTAFAKSNGLNSVKKNGCFTNKVSKSSYTQSTKPVSKVTQLDSDLS-AGFLKGS 194
            +    S+  A  N  +S   NG  T+++SK       + + K   L S+ + A   +  
Sbjct: 119 AKSDPKSSTLANQNSSSSPHTNGSITSRLSKE-----IEILKKAPHLHSNFTVATPPRTY 173

Query: 195 NPLGNFSAFSNQKQGFFPNM---------------VNYSTNGRMWNGNDRYKSRDKFSRA 239
           N  GN  +F+N +   FPN                 NY  NG +   NDR    +KF R+
Sbjct: 174 NQTGNVPSFANPRSHVFPNTNYRPSTSTNYRPITSTNYRPNGAV--SNDRVMLSEKF-RS 230

Query: 240 GGLGMPTELIRGPRAENKSASLEISDKKEVLSPTVSRDQYNLPDFQVEYEKAKFYVIKSY 299
           G   M  E+ RGPR   ++++ E S  K+  + TV RDQYNLPDFQ +YE AKFY+IKS+
Sbjct: 231 GESEMSKEITRGPRFHQRNSNPESSVVKDEFAFTVCRDQYNLPDFQTKYETAKFYMIKSF 290

Query: 300 SEDDIHKCIKYDVWSSTPNGNKKLDATFNEAEAKADETGTRCPIFLFFSVNGSGQFVGLA 359
           +EDDIHK IKYDVW+STP+GNKKL+A F  AEAK  +TGT+CPIFLFFSVN SGQFVG+A
Sbjct: 291 NEDDIHKGIKYDVWTSTPHGNKKLNAAFQNAEAKLSQTGTQCPIFLFFSVNASGQFVGVA 350

Query: 360 EMMGKVDFNKDMDFWQLDKWNGFFPVKWHVIKDVPNTLLRHITLENNENKPVTHSRDTQE 419
           EM+G VDF KDM FW+LDK+NGFFP+KWH+IKDVPN    HITL+ NENK VT SRDTQE
Sbjct: 351 EMLGPVDFKKDMKFWKLDKYNGFFPIKWHIIKDVPNRQFAHITLQINENKCVTFSRDTQE 410

Query: 420 IGLKQGLEMLKIFKSYSAKTSLLDDFNFYENKERSFHGKKSSKPATLQMDIFNDDDFTKQ 479
           I LK+GLEMLKIFKSY AKTSLLDDF+FYEN+E+    +++      Q + +N+D +   
Sbjct: 411 ITLKEGLEMLKIFKSYPAKTSLLDDFDFYENREKLCRSQRTEHTGWKQ-EAYNNDSYHNT 469

Query: 480 IKSAEKEFDEDSI-----SIINLTKNLSLKP 505
           +K+ EK  +  S      +++NLTKNLSL P
Sbjct: 470 MKAREKRIEMQSSGTNQETLVNLTKNLSLNP 500

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	528
TAIR|locus:2024286	470	ECT11 "AT1G09810" [Arabidopsis	0.727	0.817	0.468	1.5e-89
TAIR|locus:2207405	528	ECT8 "AT1G79270" [Arabidopsis	0.827	0.827	0.413	4.3e-86
TAIR|locus:2092815	667	ECT2 "evolutionarily conserved	0.75	0.593	0.405	3.2e-75
TAIR|locus:2023807	639	ECT7 "AT1G48110" [Arabidopsis	0.604	0.499	0.448	1.1e-72
TAIR|locus:2088995	595	ECT6 "AT3G17330" [Arabidopsis	0.895	0.794	0.368	6.1e-71
TAIR|locus:2159391	495	ECT3 "AT5G61020" [Arabidopsis	0.435	0.464	0.564	4.9e-69
TAIR|locus:2089280	634	ECT5 "AT3G13060" [Arabidopsis	0.518	0.432	0.488	5.3e-69
TAIR|locus:2095938	428	ECT1 "evolutionarily conserved	0.687	0.848	0.411	6.5e-67
TAIR|locus:2161213	528	ECT10 "evolutionarily conserve	0.768	0.768	0.363	1.1e-64
TAIR|locus:2010494	539	ECT9 "AT1G27960" [Arabidopsis	0.429	0.421	0.493	9.3e-59

TAIR|locus:2024286 ECT11 "AT1G09810" [Arabidopsis thaliana (taxid:3702)]

 Score = 860 (307.8 bits), Expect = 1.5e-89, Sum P(2) = 1.5e-89
 Identities = 198/423 (46%), Positives = 260/423 (61%)

Query:   109 GSEVMPCYSWDS--TYVADIQNGNAVGFGNEKYGGSTAFAKSNGLNSVKKNGCFTNKVSK 166
             GS+V+     D+   +  D + GN      +K   S  +A S  L   +  G  +N +S+
Sbjct:    47 GSDVVSSQPNDNGQAHTTDFRKGNH----RDK-NSSDVYADST-LRGDRPKG--SNCLSQ 98

Query:   167 SSYTQSTKPVSKVT---QLDSDLSA-GF---LKGSNPLGNFSAFSNQKQGFFP--NMVNY 217
             +S++ + KP+       +L  +  A  F    KG    G F  FSNQK    P    +N 
Sbjct:    99 TSFS-APKPLGNFNGAGRLPPNTQAHAFRPPFKGKEAAGQFLTFSNQKTSCVPYSGYING 157

Query:   218 STNGRMWNGNDRYKSRDKFSRAGGLGMPTELIRGPRAENKSAS-LEISDKKEVLSPTVS- 275
             ++N   W+  D  K   K  R G      EL  GPRA  K+    E S  K+  S  ++ 
Sbjct:   158 NSNNGFWDQRDHNK---KPERNGESDYLVELKCGPRANAKTRPPSESSPLKQNNSFALAL 214

Query:   276 -RDQYNLPDFQVEYEKAKFYVIKSYSEDDIHKCIKYDVWSSTPNGNKKLDATFNEAEAKA 334
              R+ YNLPDFQ +YE AKF+VIKSYSEDD+HK IKY VWSST NGNKKLDA F +AE K 
Sbjct:   215 RREMYNLPDFQTDYEDAKFFVIKSYSEDDVHKSIKYSVWSSTINGNKKLDAAFRDAETKT 274

Query:   335 DETGTRCPIFLFFSVNGSGQFVGLAEMMGKVDFNKDMDFWQLDKWNGFFPVKWHVIKDVP 394
              E G + PIFLFFSVN S QFVGLAEM+G VDFNKD+DFWQ+DKW+GFFPV+WHV+KD+P
Sbjct:   275 LEDGKKRPIFLFFSVNASRQFVGLAEMVGYVDFNKDLDFWQVDKWSGFFPVEWHVVKDIP 334

Query:   395 NTLLRHITLENNENKPVTHSRDTQEIGLKQGLEMLKIFKSYSAKTSLLDDFNFYENKERS 454
             N  LRHI L+NNE+KPVTH+RDT EI LK+GL+ML IFK YSA T LLDD +FYE +E+S
Sbjct:   335 NWELRHIILDNNEDKPVTHTRDTHEIKLKEGLQMLSIFKKYSAVTFLLDDMDFYEEREKS 394

Query:   455 FHGKKSSKPATLQMDIFNDDDF------TKQIKSAEKEFD-------EDSISIINLTKNL 501
                KK  KPATL+MD+F + D+       +++   E+ ++       +   S++N TK L
Sbjct:   395 LRAKKEHKPATLRMDLFKEKDYDYEMEGNRRMNHQERGYNWNRSSNSKTQASLVNQTKYL 454

Query:   502 SLK 504
             S++
Sbjct:   455 SIR 457

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2207405 ECT8 "AT1G79270" [Arabidopsis thaliana (taxid:3702)]

 Score = 861 (308.1 bits), Expect = 4.3e-86, P = 4.3e-86
 Identities = 202/489 (41%), Positives = 282/489 (57%)

Query:    18 ESVGEY-GAQNPSTVHYNYYYPGSNGSFSQVDNNGYIH--TDGSHSGVHSDNGSLLYYLP 74
             E++  Y G   P   +Y YYYPG +GS  +  +NGY    T+  +  +  +NGS++Y +P
Sbjct:    53 ETLETYQGLPCPYGGYYGYYYPGLDGSVGEAKDNGYYGYGTEVQYPVMQGENGSVIYLMP 112

Query:    75 GYDPYSTL--------VGVDGQCVGQQPYFSSSGYLQHPVSYGSEVMPCYSWDSTYVADI 126
             G+  Y           VGV  Q +   P +++ GY Q+   Y     P Y WD       
Sbjct:   113 GFQSYDASQTYMPINPVGVSSQAL-HSPMYAAQGYYQNQFGYADVSSPTYLWDPV----- 166

Query:   127 QNGNAVGFGNEKYGGSTAFAKSNGLNSVKKNGCFTNKVSKSSYT---QSTKPVSKVTQLD 183
               G+   +G   Y   T   K N  +S   +  + +K SK+S+T      +P  K  +  
Sbjct:   167 --GDRYVYGVASY---TPPLKQNISSSSHNHNNYYSK-SKNSFTGHGMGDRP--KTPRKA 218

Query:   184 SDLSAGFLKGSNPLGNFSAFSNQKQG--FFPNMVNYSTNGRMWNGNDRYKSRDKFSRAGG 241
             S  S        PL       NQ++G   +P       +G + N ++  K++ + ++  G
Sbjct:   219 SQNSYA----PPPL------LNQEKGRIAYPMDPVKKKSGAL-NRDETEKAKAR-TKENG 266

Query:   242 LGMPTELIRGP----RAENKSASLEI--SDKKEVLSPTVSRDQYNLPDFQVEYEKAKFYV 295
               M  +L  G       E +S SL+   +++   +   + RDQYNLP FQ +YE+A F+V
Sbjct:   267 TSM-NDLANGQDHITNGECESCSLDAEGNERSNGVGSVIRRDQYNLPSFQTKYEEAIFFV 325

Query:   296 IKSYSEDDIHKCIKYDVWSSTPNGNKKLDATFNEAEAKADETGTRCPIFLFFSVNGSGQF 355
             IKSYSEDDIHK IKY+VWSST NGNKKLD+ + E++ KA +   +CP+FLFFSVN SGQF
Sbjct:   326 IKSYSEDDIHKSIKYNVWSSTLNGNKKLDSAYQESQKKAADKSGKCPVFLFFSVNASGQF 385

Query:   356 VGLAEMMGKVDFNKDMDFWQLDKWNGFFPVKWHVIKDVPNTLLRHITLENNENKPVTHSR 415
              G+AEM+G+VD+ K M+FWQ DKW G+FPVKWH+IKDVPN  LRHI LENNENKPVT+SR
Sbjct:   386 CGVAEMIGRVDYEKSMEFWQQDKWTGYFPVKWHIIKDVPNPQLRHIILENNENKPVTNSR 445

Query:   416 DTQEIGLKQGLEMLKIFKSYSAKTSLLDDFNFYENKERSFHGKKSSKPATLQMDIFNDDD 475
             DTQE+ L QG E+L IFK+Y+AKTS+LDDF+FYEN+E+    KK   P  L+     ++D
Sbjct:   446 DTQEVRLPQGNEVLNIFKNYAAKTSILDDFDFYENREKVMVQKKLRFPPVLKK---KEED 502

Query:   476 FTKQIKSAE 484
                  K+ E
Sbjct:   503 LVADFKTME 511

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009611 "response to wounding" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

TAIR|locus:2092815 ECT2 "evolutionarily conserved C-terminal region 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 705 (253.2 bits), Expect = 3.2e-75, Sum P(2) = 3.2e-75
 Identities = 178/439 (40%), Positives = 245/439 (55%)

Query:    98 SSGYLQHPVSYGSEVMPCYSWDSTYVADIQNGNAVGFG-NEKYGGSTAFAKSNGLNSVKK 156
             ++GY     +Y     P    D +  +D+Q   + G G    Y  S+    S   N  + 
Sbjct:   235 AAGYQDPRYAYEGYYAPVPWHDGSKYSDVQRPVS-GSGVASSYSKSSTVPSSRNQN-YRS 292

Query:   157 NGCFTNKVSKSSYTQSTKPVSKVTQLDSDLSAGFL--KGSNPLG-NFSAFSNQKQGFFPN 213
             N  +T+    SS T          ++  +   G     G + LG   S + ++  G    
Sbjct:   293 NSHYTSVHQPSSVTGYGTAQGYYNRMYQNKLYGQYGSTGRSALGYGSSGYDSRTNG--RG 350

Query:   214 MVNYSTNGRMWN-GNDRYKSRDKFSRAGGLGMPTELIRGPRAE-------NKSASLEISD 265
                     R W  GN  Y   +  +   GL    EL RGPRA+       N   SLE+ +
Sbjct:   351 WAATDNKYRSWGRGNSYYYGNE--NNVDGLN---ELNRGPRAKGTKNQKGNLDDSLEVKE 405

Query:   266 KK---------EVLSPTV--SRDQYNLPDFQVEYEKAKFYVIKSYSEDDIHKCIKYDVWS 314
             +          E  +  V   R+QYN  DF V+Y  A F++IKSYSEDD+HK IKY+VW+
Sbjct:   406 QTGESNVTEVGEADNTCVVPDREQYNKEDFPVDYANAMFFIIKSYSEDDVHKSIKYNVWA 465

Query:   315 STPNGNKKLDATFNEAEAKADETGTRCPIFLFFSVNGSGQFVGLAEMMGKVDFNKDMDFW 374
             STPNGNKKL A + EA+ KA   G  CPIFLFFSVN SGQFVGLAEM G VDFN ++++W
Sbjct:   466 STPNGNKKLAAAYQEAQQKAG--G--CPIFLFFSVNASGQFVGLAEMTGPVDFNTNVEYW 521

Query:   375 QLDKWNGFFPVKWHVIKDVPNTLLRHITLENNENKPVTHSRDTQEIGLKQGLEMLKIFKS 434
             Q DKW G FP+KWH++KDVPN+LL+HITLENNENKPVT+SRDTQE+ L+QGL+++KIFK 
Sbjct:   522 QQDKWTGSFPLKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEVKLEQGLKIVKIFKE 581

Query:   435 YSAKTSLLDDFNFYENKERSFHGKKSSKPATLQMDIFNDDDFTKQIKSAEKEFDEDSISI 494
             +S+KT +LDDF+FYE ++++   KK+ K    Q+      D  K+  +AE    E   ++
Sbjct:   582 HSSKTCILDDFSFYEVRQKTILEKKA-KQTQKQVSEEKVTDEKKESATAESASKESPAAV 640

Query:   495 -----INLTKNLSL-KPCT 507
                  + + +N S+ KP T
Sbjct:   641 QTSSDVKVAENGSVAKPVT 659

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2023807 ECT7 "AT1G48110" [Arabidopsis thaliana (taxid:3702)]

 Score = 676 (243.0 bits), Expect = 1.1e-72, Sum P(2) = 1.1e-72
 Identities = 152/339 (44%), Positives = 213/339 (62%)

Query:   129 GNAVGFGNEKYGGSTAFAKSNGLNSVKKNGCFTNKVSKSSYTQ-STKPVSKVTQLDSDLS 187
             GN++G  +EK   ++  ++ + ++        + +  +   T  S +PV  V+   S +S
Sbjct:   171 GNSLGKISEKPRPNSGQSRQSEMDKSDSTSS-SGQARQGRVTSVSAQPVDVVSS--SRVS 227

Query:   188 AGF--LKGSNP-LGNFSAFSNQKQGFFPNMVNYSTNGRMWNGNDRYKSRDKFSRAGGLGM 244
             + F  L  + P L +FS  +       P +  Y  +  +     R ++R + SRA  LG 
Sbjct:   228 S-FRQLDIAPPQLNDFSKIATNNNNIRPKL--YGGHANIIPDTVREQNRGRRSRA--LG- 281

Query:   245 PTELIRGPRAENKSASLEISDKKEVLSPTVSRDQYNLPDFQVEYEKAKFYVIKSYSEDDI 304
               +LI   +A    A    ++   V++P+    QYN  D +++Y  AKF+VIKSYSEDD+
Sbjct:   282 -NQLI--VKAYTTKAGNADAEGNIVINPS----QYNKEDLRIDYSNAKFFVIKSYSEDDV 334

Query:   305 HKCIKYDVWSSTPNGNKKLDATFNEAEAKADETGTRCPIFLFFSVNGSGQFVGLAEMMGK 364
             HK IKY+VWSST +GNKKL + + +A+  A E    CPIFLFFSVN SG F G+AEM G 
Sbjct:   335 HKSIKYNVWSSTLHGNKKLQSAYEDAQRIATEKSCECPIFLFFSVNASGLFCGMAEMTGP 394

Query:   365 VDFNKDMDFWQLDKWNGFFPVKWHVIKDVPNTLLRHITLENNENKPVTHSRDTQEIGLKQ 424
             V F+KDMDFWQ DKW+G FPVKWH+IKDVPN+  RHI L+NNENKPVT+SRDTQEI LKQ
Sbjct:   395 VSFDKDMDFWQQDKWSGSFPVKWHIIKDVPNSYFRHIILQNNENKPVTNSRDTQEIMLKQ 454

Query:   425 GLEMLKIFKSYSAKTSLLDDFNFYENKERSFHGKKSSKP 463
             GLE+LKIFK +  +TSLLDDF +YE+++R    +++  P
Sbjct:   455 GLEVLKIFKDHMERTSLLDDFVYYESRQRVMQDERTRLP 493

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2088995 ECT6 "AT3G17330" [Arabidopsis thaliana (taxid:3702)]

 Score = 718 (257.8 bits), Expect = 6.1e-71, P = 6.1e-71
 Identities = 188/510 (36%), Positives = 268/510 (52%)

Query:    32 HYNYYYPGSNG-SFSQVDNNGYIHTDGSHSGVHSDNGSLLYYLPGYDPYSTLVGVDGQCV 90
             +Y+  Y  S G    Q +N  YI    S+    S       Y+PG       +GVD   V
Sbjct:    20 YYSSGYDSSVGLQGGQNENAPYICYTPSYGYAQSPYNPYNPYIPGAS-----IGVDSSFV 74

Query:    91 GQQPYFSSSGY---LQHPVSYGSEVMPCYSWDSTYVADIQNGN-AVGFGNEKYGGSTAFA 146
             G Q Y+S   Y      P      + P    +S+  + + NG  + G G+ +  GS    
Sbjct:    75 GFQQYYSDPPYESAASSPTYVPYVIQPDMVSNSSTDSLVANGGQSDGRGSMQRNGSAIAG 134

Query:   147 ------KSNGLNSVKKNGCFTNKVSKSSYTQSTKPVSKVTQLDSDLSAGFLKGSNPLGNF 200
                   KS      K+ G   N VS ++   S +   K    ++ L  G    +N + + 
Sbjct:   135 LPKDAPKSTTTGQYKQPGIPKN-VSTTASAHSLQ--GKTAYANTLLPYGKSDIANGVSSI 191

Query:   201 SAFSNQK-QGFFPNMVNYSTNGRMWNGNDRYKSRDKFSRAGGLGMPTELIRGPRAENKSA 259
             +++S +     +    + +T G  +       SR + SR        +LI   +A    A
Sbjct:   192 ASYSYKPCSKIYDARGDNNTTGSTYTSEQNRGSRTRRSR-------NQLI--VKAYTTKA 242

Query:   260 SLEISDKKEVLSPTVSRDQYNLPDFQVEYEKAKFYVIKSYSEDDIHKCIKYDVWSSTPNG 319
                 ++   V++P    D+YN  DF +EY  A+F+VIKSYSEDD+HK IKY VWSST NG
Sbjct:   243 GNADAEGNIVINP----DRYNKEDFSIEYSDARFFVIKSYSEDDVHKSIKYGVWSSTLNG 298

Query:   320 NKKLDATFNEAEAKADETGTRCPIFLFFSVNGSGQFVGLAEMMGKVDFNKDMDFWQLDKW 379
             NKKL + + +A+  A E    CPIFLFFSVN SG F G+AEM G V F++DMDFWQ DKW
Sbjct:   299 NKKLQSVYEDAQRIATEKSRECPIFLFFSVNSSGLFCGVAEMTGPVSFDRDMDFWQQDKW 358

Query:   380 NGFFPVKWHVIKDVPNTLLRHITLENNENKPVTHSRDTQEIGLKQGLEMLKIFKSYSAKT 439
             +G FPVKWH+IKDVPN+  RHI L NNENKPVT+SRDTQEI LKQGLE+LK+FK ++ KT
Sbjct:   359 SGSFPVKWHIIKDVPNSYFRHIILHNNENKPVTNSRDTQEIILKQGLEVLKLFKHHAEKT 418

Query:   440 SLLDDFNFYENKERSFHGKKSSKP-ATLQ--MDIFNDDDFTKQIKSAEKEFDEDSISIIN 496
             SLLDDF +YE+++R    +++  P  T +    + N D   +  KS++    + S++   
Sbjct:   419 SLLDDFMYYEDRQRLMQEERARLPFRTFRRPFPVLNLDFSDRSKKSSKDVVKKPSVTSAE 478

Query:   497 LTKNLSLKPCTQKKSEAVKNPVEKAIPSVI 526
              TK + LK     +    +   + + PS +
Sbjct:   479 -TKVVQLKNSDGDEKSNTQEATDDSTPSTL 507

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

TAIR|locus:2159391 ECT3 "AT5G61020" [Arabidopsis thaliana (taxid:3702)]

 Score = 700 (251.5 bits), Expect = 4.9e-69, P = 4.9e-69
 Identities = 141/250 (56%), Positives = 183/250 (73%)

Query:   227 NDRYKSRDKFSRAGGLGMP--TELIRGPRA-----ENKSASLEISDKKEVLSPT--VSRD 277
             N+ YK R+ +   G   +    E+ RGPRA     ++ S  + +S K++ ++ T  +S D
Sbjct:   181 NNTYKPRNGYHGYGKENIEGLNEMNRGPRAKGFNSQDGSKVMAVSLKEQRVTETEKLSED 240

Query:   278 -------QYNLPDFQVEYEKAKFYVIKSYSEDDIHKCIKYDVWSSTPNGNKKLDATFNEA 330
                     YN  DF   Y +AKFYVIKSYSEDDIHK IKY VWSSTPNGNKKLDA++NEA
Sbjct:   241 VSLLDPKDYNKIDFPETYTEAKFYVIKSYSEDDIHKSIKYSVWSSTPNGNKKLDASYNEA 300

Query:   331 EAKADETGTRCPIFLFFSVNGSGQFVGLAEMMGKVDFNKDMDFWQLDKWNGFFPVKWHVI 390
             + K+D  G  CP+FL FSVN SGQFVGLAEM+G VDFNK +++WQ DKW G FPVKWH +
Sbjct:   301 KQKSD--G--CPVFLLFSVNTSGQFVGLAEMVGPVDFNKTVEYWQQDKWIGCFPVKWHFV 356

Query:   391 KDVPNTLLRHITLENNENKPVTHSRDTQEIGLKQGLEMLKIFKSYSAKTSLLDDFNFYEN 450
             KD+PN+ LRHITLENNENKPVT+SRDTQE+ L+QG++++KIFK +++KT +LDDF FYEN
Sbjct:   357 KDIPNSSLRHITLENNENKPVTNSRDTQEVKLEQGIKVIKIFKDHASKTCILDDFEFYEN 416

Query:   451 KERSFHGKKS 460
             +++    +KS
Sbjct:   417 RQKIIQERKS 426

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=RCA

TAIR|locus:2089280 ECT5 "AT3G13060" [Arabidopsis thaliana (taxid:3702)]

 Score = 671 (241.3 bits), Expect = 5.3e-69, Sum P(2) = 5.3e-69
 Identities = 144/295 (48%), Positives = 183/295 (62%)

Query:   189 GFLKGSNPLGN---FSAFSNQKQGFFPNMV-NYSTNGRMWNGNDRYKSRDKFS--RAGGL 242
             GF  GSN        S    Q   +   ++ N     + W G D  + R + S    GG 
Sbjct:   279 GFGSGSNSYNRGYMHSGGRGQGSNYGSRLISNVGMGNQGWIGVDNSRGRGRVSDPSLGGA 338

Query:   243 GMPT-----ELIRGPRAEN-KSASLEISD-----KKEVLSPTVSRDQYNLPDFQVEYEKA 291
                T     E  RGPRA   K+  LE  D     KK         ++ N  DF  +Y  A
Sbjct:   339 YNGTFDILNEQNRGPRASKPKTQVLEELDSAADSKKNNKGSAKEHEESNNADFVTDYTNA 398

Query:   292 KFYVIKSYSEDDIHKCIKYDVWSSTPNGNKKLDATFNEAEAKADETGTRCPIFLFFSVNG 351
             K ++IKSYSED++HK IKY+VW+STPNGNKKLDA + EA+   DE    CP+FL FSVN 
Sbjct:   399 KLFIIKSYSEDNVHKSIKYNVWASTPNGNKKLDAAYREAK---DEKEP-CPLFLLFSVNA 454

Query:   352 SGQFVGLAEMMGKVDFNKDMDFWQLDKWNGFFPVKWHVIKDVPNTLLRHITLENNENKPV 411
             S QF G+AEM+G VDF K +D+WQ DKW+G FPVKWH+IKDVPN+  RHI LENN+NKPV
Sbjct:   455 SSQFCGVAEMVGPVDFEKSVDYWQQDKWSGQFPVKWHIIKDVPNSQFRHIILENNDNKPV 514

Query:   412 THSRDTQEIGLKQGLEMLKIFKSYSAKTSLLDDFNFYENKERSFHGKKSSKPATL 466
             T+SRDTQE+ L+QG+EMLKIFK+Y A TS+LDDF FYE +E+    +K+ +  +L
Sbjct:   515 TNSRDTQEVKLEQGIEMLKIFKNYDADTSILDDFGFYEEREKIIQDRKARRQPSL 569

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2095938 ECT1 "evolutionarily conserved C-terminal region 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 680 (244.4 bits), Expect = 6.5e-67, P = 6.5e-67
 Identities = 161/391 (41%), Positives = 214/391 (54%)

Query:    87 GQCVGQQPYFSSSGYLQHPVSYGSEVMPCYSWDSTYVADIQNGNAVG----FGNEKYGGS 142
             G    + P   + G  QHP  YG       S  S    ++  GN +      G+  +G  
Sbjct:    29 GSDANEVPMNFTKGSFQHP--YGHAPYGASSHGSERRPNMNAGNLLNGGDSIGSYPWGYI 86

Query:   143 TAFAKSNGLNSVKKNGCFTNKVSKSSYTQSTKPVS--KVTQLDSDLSAGFLKGSNPLGNF 200
              A   S G    +    +    + SS++    P S  +V   D  L       SN  G +
Sbjct:    87 PANYPSGGYPDPRFG--YDRNSNHSSFSHLMNPHSSQEVPSFDQ-LGYNDHLYSNH-GLY 142

Query:   201 SAFSNQ-KQGFFPNMVNYST--NGRMWNGNDRYKSRDKFSRAGGLGMP-----TELIRGP 252
               + N    G       Y +   GR W   D Y+    F+   G          EL RGP
Sbjct:   143 GLYGNVIDSGHAYGTFGYDSWKLGRGWYPVDGYRKTRSFNHGRGYSDEKADRLNELCRGP 202

Query:   253 RAEN-KSASLEISDKKEVLSPTVSR---DQYNLPDFQVEYEKAKFYVIKSYSEDDIHKCI 308
             R+ + K+  +  S   + +   VS     +YN  +F   + KAKF+VIKSYSEDD+H CI
Sbjct:   203 RSSDFKNPQVLNSSMLDAMKQDVSAVDLQRYNGENFPESFVKAKFFVIKSYSEDDVHNCI 262

Query:   309 KYDVWSSTPNGNKKLDATFNEAEAKADETGTRCPIFLFFSVNGSGQFVGLAEMMGKVDFN 368
             KY  WSSTP GNKKL+A + EA+  + E    CP++L FSVN SGQFVGLAEM+G VDFN
Sbjct:   263 KYGAWSSTPTGNKKLNAAYYEAKENSQE----CPVYLLFSVNASGQFVGLAEMVGPVDFN 318

Query:   369 KDMDFWQLDKWNGFFPVKWHVIKDVPNTLLRHITLENNENKPVTHSRDTQEIGLKQGLEM 428
             K M++WQ DKW G FPVKWH+IKD+PN+LLRHITL NNENKPVT+SRDTQE+ L+ G ++
Sbjct:   319 KTMEYWQQDKWIGCFPVKWHIIKDIPNSLLRHITLANNENKPVTNSRDTQEVNLEHGTKI 378

Query:   429 LKIFKSYSAKTSLLDDFNFYENKERSFHGKK 459
             +KIFK Y +KT +LDD+ FYE +++    KK
Sbjct:   379 IKIFKEYMSKTCILDDYKFYETRQKIIRDKK 409

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0019722 "calcium-mediated signaling" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0006396 "RNA processing" evidence=RCA

TAIR|locus:2161213 ECT10 "evolutionarily conserved C-terminal region 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 659 (237.0 bits), Expect = 1.1e-64, P = 1.1e-64
 Identities = 167/460 (36%), Positives = 249/460 (54%)

Query:    26 QNPSTVHYNYYYPGSNGSFSQVDN--NGYIH-----TDGSHSG--VHSDNGSLLYYLPGY 76
             Q P+ + Y+Y +  +N  ++Q  N  +GY        +  H    V++DN SL+Y  PGY
Sbjct:    64 QTPTNL-YHYDWDIANSGYAQGINTWDGYPRYATTTPEAMHVPPVVYNDNSSLMYQYPGY 122

Query:    77 DPYSTLVGVDGQCVGQQPYFSSSGYLQHPVSYGSEV--MPCYSWDSTYVADIQNGNAVGF 134
               ++    V     GQ P   S  Y   P    S +  +P    D T  A +     + +
Sbjct:   123 G-FNPYPSV--MLEGQIPV--SPAYYPQPFGAPSAMHYLPS-DIDPTSAAYM-----IPY 171

Query:   135 GNEKYGGSTAFAKSNGLNSVKKNGCFTNKVS-KSSYTQSTKPVSKVTQLDSDLSAGFLKG 193
             G  +YGG   ++ + G  S+  +  +   +     Y  +   V+        L    +  
Sbjct:   172 G--QYGGGN-YSGNQGDISLTSHIPYPQTMGILGPYDHNASQVA--------LHGSGVAS 220

Query:   194 SNPLGNF-SAFSNQKQGFFPNMVNYSTNGRMWNGNDRYKSRDKFSRAGGLGMPTELI--R 250
             S+ LG +    S Q     P+   Y  + R+    D  K R+K    G +   ++L   R
Sbjct:   221 SSSLGGYYHVGSYQNPSSTPSY--YGVDNRVRLTPDIGKRREKDQ--GSISSTSDLYGNR 276

Query:   251 GPRAENKSASLEISDKKEVLSPTVSRDQ--------YNLPDFQVEYEKAKFYVIKSYSED 302
             GPRA ++  S   S     +  + S           YN P+F  +Y+ AKF+++KS+SED
Sbjct:   277 GPRASSRVKSKNSSKPCSTIGDSASDSSTAGPNPSLYNHPEFVTDYKNAKFFIVKSFSED 336

Query:   303 DIHKCIKYDVWSSTPNGNKKLDATFNEAEAKADETGTRCPIFLFFSVNGSGQFVGLAEMM 362
             ++H+ IKY+VW+STP+GNKKLD  + +AE    + G +CPIFLFFSVN SGQF G++EM+
Sbjct:   337 NVHRSIKYNVWASTPHGNKKLDTAYRDAE----KMGGKCPIFLFFSVNASGQFCGVSEMV 392

Query:   363 GKVDFNKDMDFWQLDKWNGFFPVKWHVIKDVPNTLLRHITLENNENKPVTHSRDTQEIGL 422
             G VDF KD  +WQ D+W+G FPVKWH++KD+PN    HI L+NN+NKPVTHSRD+QE+ L
Sbjct:   393 GPVDFEKDAGYWQQDRWSGQFPVKWHIVKDIPNNRFCHILLQNNDNKPVTHSRDSQEVKL 452

Query:   423 KQGLEMLKIFKSYSAKTSLLDDFNFYENKERSFHGKKSSK 462
             +QG+EML+IFK Y A TS+LDDF +Y+  E    G+  ++
Sbjct:   453 RQGIEMLRIFKEYEAHTSILDDFGYYDELEGQKVGEDGTR 492

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2010494 ECT9 "AT1G27960" [Arabidopsis thaliana (taxid:3702)]

 Score = 603 (217.3 bits), Expect = 9.3e-59, P = 9.3e-59
 Identities = 119/241 (49%), Positives = 168/241 (69%)

Query:   229 RYKSRDKFSRAGG-LGMPTELIRGPRAENKSASLEISDKKEVLSPTVSR-DQYNLPDFQV 286
             R +S + FS     L M TE  RGPRA        ++ K +++S    R D++   +   
Sbjct:   274 RSESYNDFSHCPAMLDMLTESNRGPRASR------LNSKSKMIS--YDRVDRFCQQELLS 325

Query:   287 EYEKAKFYVIKSYSEDDIHKCIKYDVWSSTPNGNKKLDATFNEAEAKADETGTRCPIFLF 346
             ++  AKF+VIKSYSED++HK IK+ VW+ST NGNKKLDA + EA+ K       CP+FL 
Sbjct:   326 QFRDAKFFVIKSYSEDNVHKSIKHCVWASTKNGNKKLDAAYREAKKK----DVACPVFLL 381

Query:   347 FSVNGSGQFVGLAEMMGKVDFNKDMDFWQLDKWNGFFPVKWHVIKDVPNTLLRHITLENN 406
             FSVN S QF G+AEM+G VDFN  +++WQ D+W+G FPV+W ++KDVPN+L RHI +E+N
Sbjct:   382 FSVNASSQFCGVAEMVGPVDFNTSVEYWQQDRWSGHFPVQWLIVKDVPNSLFRHIIIESN 441

Query:   407 ENKPVTHSRDTQEIGLKQGLEMLKIFKSYSAKTSLLDDFNFYENKERSFHGKKSSKPATL 466
             +NKPVT+SRDTQE+GL++G+EML IF S   ++S+LDDFNFYE ++ +   +K+ + A L
Sbjct:   442 DNKPVTNSRDTQEVGLEKGIEMLDIFISCEMRSSILDDFNFYEERQIAIQDRKARQRAVL 501

Query:   467 Q 467
             +
Sbjct:   502 E 502

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016571 "histone methylation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	528
pfam04146	135	pfam04146, YTH, YT521-B-like domain	1e-63

>gnl|CDD|217926 pfam04146, YTH, YT521-B-like domain

 Score =  203 bits (518), Expect = 1e-63
 Identities = 70/145 (48%), Positives = 92/145 (63%), Gaps = 12/145 (8%)

Query: 292 KFYVIKSYSEDDIHKCIKYDVWSSTPNGNKKLDATFNEAEAKADETGTRCPIFLFFSVNG 351
           +F++IKSY+ED++H  IKY VW+ST + NKKL+  F EAE          P++L FSVN 
Sbjct: 1   RFFIIKSYNEDNVHLSIKYGVWASTSHNNKKLNKAFKEAE----------PVYLIFSVNK 50

Query: 352 SGQFVGLAEMMGKVDFNKDMDFWQLD--KWNGFFPVKWHVIKDVPNTLLRHITLENNENK 409
           SG+F G A M   +DF+   +       KW G F V+W  +KD+P   LRH+   NNENK
Sbjct: 51  SGKFCGYARMTSPIDFDSTANSQDSSSQKWGGPFKVEWLSVKDLPFHRLRHLKNPNNENK 110

Query: 410 PVTHSRDTQEIGLKQGLEMLKIFKS 434
           PVT SRD QEI  + G E+LKIFK+
Sbjct: 111 PVTISRDGQEIEPEIGEELLKIFKN 135

A protein of the YTH family has been shown to selectively remove transcripts of meiosis-specific genes expressed in mitotic cells. It has been speculated that in higher eukaryotic YTH-family members may be involved in similar mechanisms to suppress gene regulation during gametogenesis or general silencing. The rat protein YT521-B is a tyrosine-phosphorylated nuclear protein, that interacts with the nuclear transcriptosomal component scaffold attachment factor B, and the 68-kDa Src substrate associated during mitosis, Sam68. In vivo splicing assays demonstrated that YT521-B modulates alternative splice site selection in a concentration-dependent manner. The YTH domain has been identified as part of the PUA superfamily. Length = 135

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	528
KOG1901	487	consensus Uncharacterized high-glucose-regulated p	100.0
PF04146	140	YTH: YT521-B-like domain; InterPro: IPR007275 A pr	100.0
KOG1902	441	consensus Putative signal transduction protein inv	100.0
PRK00809	144	hypothetical protein; Provisional	93.82
PF01878	143	EVE: EVE domain; InterPro: IPR002740 The EVE domai	82.45

>KOG1901 consensus Uncharacterized high-glucose-regulated protein [General function prediction only]

Probab=100.00  E-value=3.7e-76  Score=621.87  Aligned_cols=246  Identities=57%  Similarity=0.950  Sum_probs=215.6

Q ss_pred             CcCCCcccCcccCCCCCCCCC------CCCCCCCCCCcCCCCCCCCCCCcccc---------cccccCCcccCCCCCCCC
Q 009696          218 STNGRMWNGNDRYKSRDKFSR------AGGLGMPTELIRGPRAENKSASLEIS---------DKKEVLSPTVSRDQYNLP  282 (528)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~e~~~gpr~~~~~~~~~~~---------~~~~~~~~~~~~~~yn~~  282 (528)
                      ..+++.|...+..+++...+.      ....+.++|+|||||+...+.....+         ........++++++||++
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nrg~~s~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~yn~~  290 (487)
T KOG1901|consen  211 QPKGRSPYGVDNSRPTWGINYPRLPSDEAGSDSLNEQNRGPRSSDSRGQDINSSGPTEAGSASAPESNESVKRRDRYNPP  290 (487)
T ss_pred             cccCCCCcccCCCcccccccCCCccccccccccccccccCcccccccCccccCCcchhccccccccccccccChhhcCcc
Confidence            456677766655555433221      12367789999999998544332111         011111368999999999


Q ss_pred             CcccCCCCcEEEEEecCChhhHHHhhhcceeecCCcchhHHHHHHHHHHhhccccCCcccEEEEEEECCCCceeEEEEee
Q 009696          283 DFQVEYEKAKFYVIKSYSEDDIHKCIKYDVWSSTPNGNKKLDATFNEAEAKADETGTRCPIFLFFSVNGSGQFVGLAEMM  362 (528)
Q Consensus       283 df~~~~~~aRFFVIKS~nednIhkSikygVWaSt~~nnkkLd~AF~ea~~~~~~~~~~~pVyLfFSVN~Sg~F~G~AeM~  362 (528)
                      +|++++.+|||||||||+|||||+||||+|||||+++|||||+||++++.    +..+||||||||||+||||||||||+
T Consensus       291 ~f~~~~~nAkfFVIKSySEDdVHkSIKY~vWsST~~GNKkLdaAYreak~----~~~~cPvfLfFSVNaSGqFCGvAEMv  366 (487)
T KOG1901|consen  291 DFLTDYSNAKFFVIKSYSEDDVHKSIKYNVWSSTLNGNKKLDAAYREAKK----KSGKCPVFLFFSVNASGQFCGVAEMV  366 (487)
T ss_pred             ccccccccceEEEEeccChhhhhhhcccceeecccCCchhhHHHHHHhhh----ccCCCCceEEEEEcCCccccceeeec
Confidence            99999999999999999999999999999999999999999999999985    45799999999999999999999999


Q ss_pred             cccCCCCCchhhhhccCCCccceEEEEEecCCCccccccccCCCCCCceeecCCCeeechHHHHHHHHHHhhcCCCCCcC
Q 009696          363 GKVDFNKDMDFWQLDKWNGFFPVKWHVIKDVPNTLLRHITLENNENKPVTHSRDTQEIGLKQGLEMLKIFKSYSAKTSLL  442 (528)
Q Consensus       363 S~vd~~k~~~~W~qdkw~G~F~VkWi~vkdVPf~~lrHI~N~~NeNKPVt~sRDgQEI~~~~G~qLLkIF~~~~~~tSil  442 (528)
                      +||||+++++||+||||.|.|+||||+||||||..||||++++|||||||+|||+|||.+++|++||+||++|.++||||
T Consensus       367 gPVdfn~~~~~WqQDKW~G~FpVKWhiVKDVPNs~lrHI~LeNNeNKPVTnSRDTQEV~leqGievlkIfk~y~~~TSiL  446 (487)
T KOG1901|consen  367 GPVDFNKDMEYWQQDKWSGSFPVKWHIVKDVPNSQLRHIILENNENKPVTNSRDTQEVPLEQGIEVLKIFKSYAAKTSIL  446 (487)
T ss_pred             cceecccccchhhhcccceecceeeEEEeeCCccceeEEEeecCCCCCcccccccceecHHHHHHHHHHHHhhcceeeec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchhhHhhhhhhcccccCCCCccc
Q 009696          443 DDFNFYENKERSFHGKKSSKPATLQ  467 (528)
Q Consensus       443 ddF~~ye~rek~~~~~~~~~~~~~~  467 (528)
                      |||.|||+||+.|+++|+++++.+.
T Consensus       447 DDf~~Ye~rq~~~~~~k~r~~~~~~  471 (487)
T KOG1901|consen  447 DDFGFYEERQKIIQDKKARQPPKLE  471 (487)
T ss_pred             ccccchHHHHHHhhhcccccCcccc
Confidence            9999999999999999999887665

>PF04146 YTH: YT521-B-like domain; InterPro: IPR007275 A protein of the YTH family has been shown to selectively remove transcripts of meiosis-specific genes expressed in mitotic cells []

Probab=100.00  E-value=1.2e-49  Score=363.19  Aligned_cols=136  Identities=48%  Similarity=0.870  Sum_probs=114.3

Q ss_pred             CcEEEEEecCChhhHHHhhhcceeecCCcchhHHHHHHHHHHhhccccCCcccEEEEEEECCCCceeEEEEeecccCCCC
Q 009696          290 KAKFYVIKSYSEDDIHKCIKYDVWSSTPNGNKKLDATFNEAEAKADETGTRCPIFLFFSVNGSGQFVGLAEMMGKVDFNK  369 (528)
Q Consensus       290 ~aRFFVIKS~nednIhkSikygVWaSt~~nnkkLd~AF~ea~~~~~~~~~~~pVyLfFSVN~Sg~F~G~AeM~S~vd~~k  369 (528)
                      ++|||||||+|++||++|+++|||+|+++++++|++||++++          +||||||||+||||||||+|+|+++.+.
T Consensus         1 ~~rfFiiKS~~~~ni~~s~~~gvW~t~~~~~~~L~~Af~~~~----------~V~L~FSvn~S~~F~G~A~M~s~~~~~~   70 (140)
T PF04146_consen    1 NARFFIIKSFNEENIHLSIKYGVWATQPKNEKKLNEAFKESR----------NVYLFFSVNGSGHFQGYARMTSPIDPDS   70 (140)
T ss_dssp             --EEEEEEESSCHHHHHHHHCTEEE--CCCHHHHHHHHHHSS-----------EEEEEEETTTSEEEEEEEEECECCSSS
T ss_pred             CcEEEEEEECCHHHHHHHHhCCEEcccccchHHHHHHHHhCC----------CEEEEEeecCcceEEEEEEEccCCCCcc
Confidence            589999999999999999999999999999999999999984          7999999999999999999999999999


Q ss_pred             Cchhhh----hccCCCccceEEEEEecCCCccccccccCCCCCCceeecCCCeeechHHHHHHHHHHhhc
Q 009696          370 DMDFWQ----LDKWNGFFPVKWHVIKDVPNTLLRHITLENNENKPVTHSRDTQEIGLKQGLEMLKIFKSY  435 (528)
Q Consensus       370 ~~~~W~----qdkw~G~F~VkWi~vkdVPf~~lrHI~N~~NeNKPVt~sRDgQEI~~~~G~qLLkIF~~~  435 (528)
                      ...+|.    ..+|+|.|+|+||++++|||+.++||+|++|+||||+++||||||++++|++||+||+++
T Consensus        71 ~~~~w~~~~~~~~~~g~F~v~Wl~~~~lpf~~~~hl~n~~n~~~pV~~~rDgqEi~~~~G~~l~~~f~~~  140 (140)
T PF04146_consen   71 PKPFWQQDSSSSKWGGPFRVEWLRVKDLPFSKLRHLRNPLNENKPVKISRDGQEIEPEIGEQLLKIFDNQ  140 (140)
T ss_dssp             ------SS-SGCGG-SEEEEEEEE-S-EEHHHHTT-EETTTTTEETTS--TTEEE-CCHHHHHHHHCGT-
T ss_pred             cCccccccccccccCCceEEEEEECCcCChHHhcccccccCCCcEEEECCCCEEeCHHHHHHHHHHHhhC
Confidence            999995    479999999999999999999999999999999999999999999999999999999863

It has been speculated that in higher eukaryotic YTH-family members may be involved in similar mechanaisms to suppress gene regulation during gametogenesis or general silencing. The rat protein YT521-B, Q9QY02 from SWISSPROT, is a tyrosine-phosphorylated nuclear protein, that interacts with the nuclear transcriptosomal component scaffold attachment factor B, and the 68kDa Src substrate associated during mitosis, Sam68. In vivo splicing assays demonstrated that YT521-B modulates alternative splice site selection in a concentration-dependent manner []. The domain is predicted to have four alpha helices and six beta strands []. In plant cells environmental stimuli, which light, pathogens, hormones, and abiotic stresses, elicit changes in the cytosolic Ca levels but little is known of the cytosolic-nuclear Ca-signaling pathway; where gene regulation occurs to respond appropriately to the stress. It has been demonstrated that two novel Arabidopsis thaliana (Mouse-ear cress) proteins, (ECT1 and ECT2), specifically associated with Calcineurin B-Like-Interacting Protein Kinase1 (CIPK1), a member of Ser/Thr protein kinases that interact with the calcineurin B-like Ca-binding proteins. These two proteins contain a very similar C-terminal region (180 amino acids in length, 81% similarity), which is required and sufficient for both interaction with CIPK1 and translocation to the nucleus. This domain, the YTH-domain, is conserved across all eukaryotes and suggests that the conserved C-terminal region plays a critical role in relaying the cytosolic Ca-signals to the nucleus, thereby regulating gene expression [].; PDB: 2YUD_A 2YU6_A.

>KOG1902 consensus Putative signal transduction protein involved in RNA splicing [Signal transduction mechanisms; RNA processing and modification]

Probab=100.00  E-value=9e-43  Score=353.20  Aligned_cols=150  Identities=31%  Similarity=0.570  Sum_probs=137.5

Q ss_pred             CCCCCCCcccCCCCcEEEEEecCChhhHHHhhhcceeecCCcchhHHHHHHHHHHhhccccCCcccEEEEEEECCCCcee
Q 009696          277 DQYNLPDFQVEYEKAKFYVIKSYSEDDIHKCIKYDVWSSTPNGNKKLDATFNEAEAKADETGTRCPIFLFFSVNGSGQFV  356 (528)
Q Consensus       277 ~~yn~~df~~~~~~aRFFVIKS~nednIhkSikygVWaSt~~nnkkLd~AF~ea~~~~~~~~~~~pVyLfFSVN~Sg~F~  356 (528)
                      ++++....+  .-.+|||||||.|.+||.+|++.|||+|++.|++||+.||+++.          .||||||||.|||||
T Consensus        60 ~~~~~ss~~--~~~~rYFIiKS~N~eN~elSvqkGiWaTq~sNE~kLn~AF~~s~----------~ViLIFSVn~SghFQ  127 (441)
T KOG1902|consen   60 DQTSKLKYV--LQDARYFIIKSNNHENVELSVQKGVWSTQPSNEKKLNLAFRSSR----------SVILIFSVNESGHFQ  127 (441)
T ss_pred             hhccccccc--CCceEEEEEecCCccceeeehhcceeccccccHHHHHHHHhhcC----------cEEEEEEecccccch
Confidence            444444333  24899999999999999999999999999999999999999985          699999999999999


Q ss_pred             EEEEeecccCCCCCchhhhh-----ccCCCccceEEEEEecCCCccccccccCCCCCCceeecCCCeeechHHHHHHHHH
Q 009696          357 GLAEMMGKVDFNKDMDFWQL-----DKWNGFFPVKWHVIKDVPNTLLRHITLENNENKPVTHSRDTQEIGLKQGLEMLKI  431 (528)
Q Consensus       357 G~AeM~S~vd~~k~~~~W~q-----dkw~G~F~VkWi~vkdVPf~~lrHI~N~~NeNKPVt~sRDgQEI~~~~G~qLLkI  431 (528)
                      |||+|+|+|...++...|.+     ..|+|.|+||||++++|||.++.||+|||||||||++|||||||++++|+|||.|
T Consensus       128 G~ArMsS~IG~~~~q~~W~~~~G~~a~~G~~FkVkWiRl~eLpFqkt~hL~NP~NdnkpVKISRD~QELep~VGEqL~~L  207 (441)
T KOG1902|consen  128 GFARMSSEIGHGGSQIHWVLPAGMSAMLGGVFKVKWIRLRELPFQKTAHLTNPWNENKPVKISRDGQELEPEVGEQLCLL  207 (441)
T ss_pred             hhhhhcchhccCCCCccccccCCcccccCceeeEeEEeeccccchhhhhcCCcccccCceeecccccccChhHHHHHHHh
Confidence            99999999999999888876     6799999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcCCC
Q 009696          432 FKSYSAK  438 (528)
Q Consensus       432 F~~~~~~  438 (528)
                      +...+..
T Consensus       208 l~~~p~~  214 (441)
T KOG1902|consen  208 LPPDPSI  214 (441)
T ss_pred             cCCCcch
Confidence            9876654

>PRK00809 hypothetical protein; Provisional

Probab=93.82  E-value=0.22  Score=46.77  Aligned_cols=93  Identities=13%  Similarity=0.160  Sum_probs=62.2

Q ss_pred             EEEEEecCChhhHHHhhhcceeecCCcchhHHHHHHHHHHhhccccCCcccEEEEEEEC------CCCceeEEEEeeccc
Q 009696          292 KFYVIKSYSEDDIHKCIKYDVWSSTPNGNKKLDATFNEAEAKADETGTRCPIFLFFSVN------GSGQFVGLAEMMGKV  365 (528)
Q Consensus       292 RFFVIKS~nednIhkSikygVWaSt~~nnkkLd~AF~ea~~~~~~~~~~~pVyLfFSVN------~Sg~F~G~AeM~S~v  365 (528)
                      +|+|+=+ |+||+......|||-.....     +++-..-       ..+..+||++-+      .-..|.|+|++++..
T Consensus         2 ~yWi~~~-~~~~~~~~~~~gv~g~~~~~-----rn~lr~M-------k~GD~v~fYhs~~~~~~~~~~~ivgi~eV~~~~   68 (144)
T PRK00809          2 TYWLCIT-NEDNWEVIKDKNVWGVPERY-----KNTIEKV-------KPGDKLIIYVSQEYGAERLPGKIVGIYEVVSEW   68 (144)
T ss_pred             ceEEEec-CHHHHHHHHhCCEeecchhh-----hhHHhhC-------CCCCEEEEEECCccCCCCCCceEEEEEEEecCc
Confidence            5776666 99999999999999995432     1221111       135688888887      478999999999875


Q ss_pred             CCCCCchhhh------hccCCCccceEEEEEec--CCCccc
Q 009696          366 DFNKDMDFWQ------LDKWNGFFPVKWHVIKD--VPNTLL  398 (528)
Q Consensus       366 d~~k~~~~W~------qdkw~G~F~VkWi~vkd--VPf~~l  398 (528)
                      -.+.+ .+|.      .+.+--..+|+++...+  ||...|
T Consensus        69 y~D~t-~~~p~~~~~~~~~~p~rvdV~~~~~~~~~v~l~~L  108 (144)
T PRK00809         69 YEDST-PIFPAEPVRPKEIYPYRVKLKPVKIFEEPIDFKPL  108 (144)
T ss_pred             ccCCc-cCCCccccCCCCCceEEEEEEEeeecCCcccHHHH
Confidence            32221 1332      12223467899998877  776665

>PF01878 EVE: EVE domain; InterPro: IPR002740 The EVE domain is part of the wider PUA domain superfamily

Probab=82.45  E-value=4.4  Score=36.95  Aligned_cols=128  Identities=13%  Similarity=0.170  Sum_probs=65.7

Q ss_pred             EEEEEecC----ChhhHHHhhhcceeecCCcchhHHHHHHHHHHhhccccCCcccEEEEEEEC-CCCceeEEEEeecccC
Q 009696          292 KFYVIKSY----SEDDIHKCIKYDVWSSTPNGNKKLDATFNEAEAKADETGTRCPIFLFFSVN-GSGQFVGLAEMMGKVD  366 (528)
Q Consensus       292 RFFVIKS~----nednIhkSikygVWaSt~~nnkkLd~AF~ea~~~~~~~~~~~pVyLfFSVN-~Sg~F~G~AeM~S~vd  366 (528)
                      +|+|+|+.    +-+++ .-.+..+|.-..+...+-  +++..+        .+.-+||+.-+ ..+.|.|+|+.++..-
T Consensus         1 ~YWl~~~~P~~~~~~~~-~~~~~~~~~gv~~~~~~~--~l~~mk--------~GD~vifY~s~~~~~~ivai~~V~~~~~   69 (143)
T PF01878_consen    1 RYWLLKANPENFSIDDL-EHWGVTVWDGVRNYQARK--NLKRMK--------PGDKVIFYHSGCKERGIVAIGEVVSEPY   69 (143)
T ss_dssp             -EEEEEEBTTTSHHHHH-HHHSEEECHTEEEHHHHH--HHHC----------TT-EEEEEETSSSS-EEEEEEEEEEEEE
T ss_pred             CEEEEEeCCcccCHHHh-cccceEEEcCEeehhhhh--hhhcCC--------CCCEEEEEEcCCCCCEEEEEEEEecccc
Confidence            58999998    76666 455556666444333322  444332        44677778777 6799999999998753


Q ss_pred             CCCCc----hhhhhcc---CCCccceEEEEEec--CCCccccccccCCCCCCceeec-CCCeeechHHHHHHHHH
Q 009696          367 FNKDM----DFWQLDK---WNGFFPVKWHVIKD--VPNTLLRHITLENNENKPVTHS-RDTQEIGLKQGLEMLKI  431 (528)
Q Consensus       367 ~~k~~----~~W~qdk---w~G~F~VkWi~vkd--VPf~~lrHI~N~~NeNKPVt~s-RDgQEI~~~~G~qLLkI  431 (528)
                      .+...    ..|...+   .....+|+++..-+  |+...|+... .+.+-.-++.. .--.+|..+.-..|++|
T Consensus        70 ~d~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~pi~l~~Lk~~~-~l~~l~~i~~~r~s~~~it~~~~~~I~~~  143 (143)
T PF01878_consen   70 PDPTAFDPDSPYYDPKSNPKPYRVDVEYVKIFEKPIPLKELKAEP-ELENLSFIRNKRLSVFPITEEDFEAIMEM  143 (143)
T ss_dssp             E-GGGTSTTSTTBTTTSCSSSEEEEEEEEEEEEEEEEHHHHHC-G-GGTTSHHHHTTT-SEEEE-HHHHHHHHHH
T ss_pred             CCCccccccccCcCCccCCCeeEEEEEEEEecCCCcCHHHHhcCC-ccccChhhhcCCcCeEEECHHHHHHHHhC
Confidence            22211    1111222   23356788886644  4446664320 11111111111 23456667766666654

The function of this domain is not known but, given the structural similarities to PUA, is likely to involve RNA binding []. ; PDB: 2G2X_B 2AR1_A 3EOP_A 2EVE_A 2HD9_A 2ZBN_A 1WMM_A 2P5D_A 2GBS_A 1ZCE_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	528
2yud_A	180	Solution Structure Of The Yth Domain In Yth Domain-		2e-12
2yu6_A	141	Solution Structure Of The Yth Domain In Yth Domain-		1e-11

>pdb|2YUD|A Chain A, Solution Structure Of The Yth Domain In Yth Domain- Containing Protein 1 (Putative Splicing Factor Yt521) Length = 180

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 76/166 (45%), Gaps = 18/166 (10%)
Query: 273 TVSRDQYNLPDFQVEYEKAKFYVIKSYSEDDIHKCIKYDVWSSTPNGNKKLDATFNEAEA 332
            V +DQ +    +   + A+F++IKS + +++       VWS+ P   KKL+  F  A +
Sbjct: 10  AVRKDQTS--KLKYVLQDARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSARS 67
Query: 333 KADETGTRCPIFLFFSVNGSGQFVGLAEMMGKVDFNKDMDFWQL------DKWNGFFPVK 386
                     + L FSV  SG+F G A +  +         W L          G F + 
Sbjct: 68  ----------VILIFSVRESGKFQGFARLSSESHHGGSPIHWVLPAGMSAKMLGGVFKID 117
Query: 387 WHVIKDVPNTLLRHITLENNENKPVTHSRDTQEIGLKQGLEMLKIF 432
           W   +++P T   H+T   NE+KPV   RD QEI L+ G ++  +F
Sbjct: 118 WICRRELPFTKSAHLTNPWNEHKPVKIGRDGQEIELECGTQLCLLF 163

>pdb|2YU6|A Chain A, Solution Structure Of The Yth Domain In Yth Domain- Containing Protein 2 Length = 141

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 73/143 (51%), Gaps = 11/143 (7%)
Query: 291 AKFYVIKSYSEDDIHKCIKYDVWSSTPNGNKKLDATFNEAEAKADETGTRCPIFLFFSVN 350
            +++++KS +  ++    +  +WS+TP+  +KL+  F E+            ++L FSV 
Sbjct: 8   VRYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESSI----------VYLVFSVQ 57
Query: 351 GSGQFVGLAEMMGKVDFNKDMDFWQLDKWNGFFPVKWHVIKDVPNTLLRHITLENNENKP 410
           GSG F G + M  ++   K  D W      G F V+W   + +P     H+    N+NK 
Sbjct: 58  GSGHFQGFSRMSSEIGREKSQD-WGSAGLGGVFKVEWIRKESLPFQFAHHLLNPWNDNKK 116
Query: 411 VTHSRDTQEIGLKQGLEMLKIFK 433
           V  SRD QE+  + G ++L++++
Sbjct: 117 VQISRDGQELEPQVGEQLLQLWE 139

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	528
2yu6_A	141	YTH domain-containing protein 2; structural genomi	1e-56
2yud_A	180	YTH domain-containing protein 1; structure genomic	2e-56
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-06

>2yu6_A YTH domain-containing protein 2; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 141

 Score =  185 bits (470), Expect = 1e-56
 Identities = 39/147 (26%), Positives = 72/147 (48%), Gaps = 11/147 (7%)

Query: 287 EYEKAKFYVIKSYSEDDIHKCIKYDVWSSTPNGNKKLDATFNEAEAKADETGTRCPIFLF 346
                +++++KS +  ++    +  +WS+TP+  +KL+  F E+            ++L 
Sbjct: 4   GSSGVRYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESS----------IVYLV 53

Query: 347 FSVNGSGQFVGLAEMMGKVDFNKDMDFWQLDKWNGFFPVKWHVIKDVPNTLLRHITLENN 406
           FSV GSG F G + M  ++   K    W      G F V+W   + +P     H+    N
Sbjct: 54  FSVQGSGHFQGFSRMSSEIGREKSQ-DWGSAGLGGVFKVEWIRKESLPFQFAHHLLNPWN 112

Query: 407 ENKPVTHSRDTQEIGLKQGLEMLKIFK 433
           +NK V  SRD QE+  + G ++L++++
Sbjct: 113 DNKKVQISRDGQELEPQVGEQLLQLWE 139

>2yud_A YTH domain-containing protein 1; structure genomics, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 180

 Score =  185 bits (471), Expect = 2e-56
 Identities = 50/192 (26%), Positives = 81/192 (42%), Gaps = 25/192 (13%)

Query: 271 SPTVSRDQYNLPDFQVEYEKAKFYVIKSYSEDDIHKCIKYDVWSSTPNGNKKLDATFNEA 330
              V +DQ +   +    + A+F++IKS + +++       VWS+ P   KKL+  F  A
Sbjct: 8   VRAVRKDQTSKLKYV--LQDARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSA 65

Query: 331 EAKADETGTRCPIFLFFSVNGSGQFVGLAEMMGKVDFNKDMDFWQLD------KWNGFFP 384
                       + L FSV  SG+F G A +  +         W L          G F 
Sbjct: 66  R----------SVILIFSVRESGKFQGFARLSSESHHGGSPIHWVLPAGMSAKMLGGVFK 115

Query: 385 VKWHVIKDVPNTLLRHITLENNENKPVTHSRDTQEIGLKQGLEMLKIFKSYSAKTSLLDD 444
           + W   +++P T   H+T   NE+KPV   RD QEI L+ G ++  +F          + 
Sbjct: 116 IDWICRRELPFTKSAHLTNPWNEHKPVKIGRDGQEIELECGTQLCLLFPPD-------ES 168

Query: 445 FNFYENKERSFH 456
            + Y+   +  H
Sbjct: 169 IDLYQVIHKMRH 180

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.9 bits (118), Expect = 2e-06
 Identities = 53/422 (12%), Positives = 114/422 (27%), Gaps = 142/422 (33%)

Query: 172 STKPVSKVTQLDSDLSAGFL-------KGSNPLGNF-------------SAFSNQKQGFF 211
           S + +  +      +S           K    +  F             S    +++   
Sbjct: 47  SKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPS 106

Query: 212 PNMVNY-STNGRMWNGNDRYKSRDKFSRAGGLGMPTELIRGPRAEN----KSASLEISDK 266
                Y     R++N N  +    K++               R +     + A LE+   
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFA---KYNV-------------SRLQPYLKLRQALLELRPA 150

Query: 267 ------------KEVLSPTVSRDQ--YNLPDFQVEYEKAKFY--VIKSYSEDDIHK---- 306
                       K  ++  V          DF++      F+  +    S + + +    
Sbjct: 151 KNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI------FWLNLKNCNSPETVLEMLQK 204

Query: 307 -CIKYD-VWSSTPNGNKKLDATFNEAEAK-----ADETGTRCPIFLFFSVNGSGQFVGLA 359
              + D  W+S  + +  +    +  +A+       +    C + L              
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL-------------- 250

Query: 360 EMMGKVDFNKDMDFWQLDKWNGF-FPVK-------WHVIKDVPNTLLRHITLENNENKPV 411
                       +      WN F    K         V   +      HI+L+ + +  +
Sbjct: 251 ------L-----NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD-HHSMTL 298

Query: 412 THSRDTQEIGLK------QGL--EMLKI--FKSYSAKTSLLDDFNFYENKERSFHGKKSS 461
           T   + + + LK      Q L  E+L     +      S+ D    ++N +     K ++
Sbjct: 299 TPD-EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT 357

Query: 462 ---------KPATLQ-----MDIFNDDDFTKQIKSA------EKEFDEDSISIINLTKNL 501
                    +PA  +     + +F        I +             D + ++N     
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSVFPPS--AH-IPTILLSLIWFDVIKSDVMVVVNKLHKY 414

Query: 502 SL 503
           SL
Sbjct: 415 SL 416

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 9e-06
 Identities = 69/470 (14%), Positives = 126/470 (26%), Gaps = 122/470 (25%)

Query: 133 GFGNEKYGGSTAFAKSNGLNSVKKNGCFTNKVSKSSYTQSTKPVSKV-------TQLDSD 185
           G G  K    T  A  +   S K       K+   +      P + +        Q+D +
Sbjct: 160 GSG--K----TWVA-LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN 212

Query: 186 LSAGFLKGSNPLGNFSAFSNQKQGFF-----PNM------VNYSTNGRMWNGND-RYK-- 231
            ++     SN      +   + +         N       V    N + WN  +   K  
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ---NAKAWNAFNLSCKIL 269

Query: 232 --SRDKFSRAGGLGMPTELIRGPRAENKSASLEISDKKEVLSPTVSRDQYNLPDFQVEYE 289
             +R K      L   T        ++ S +L   + K +L   +     +LP    E  
Sbjct: 270 LTTRFK-QVTDFLSAATT--THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP---REVL 323

Query: 290 KAKFYVIKSYSEDDIHKCIKYDVWSSTPNGNKKLDATFNEAEAKADETGTRCPIFLFFSV 349
                 +   +E        +D W        KL      +    +    R  +F   SV
Sbjct: 324 TTNPRRLSIIAESIRDGLATWDNWKHV--NCDKLTTIIESSLNVLEPAEYR-KMFDRLSV 380

Query: 350 NGSGQFVGLAEMMGKVDFNKDMD--------FWQ-------------------LDKWNGF 382
                            F              W                    ++K    
Sbjct: 381 -----------------FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE 423

Query: 383 FPVKWHVI-----KDVPNTLLRHITLENNENKPVTHSRDT-----------QEIG--LKQ 424
             +    I       + N    H ++ ++ N P T   D              IG  LK 
Sbjct: 424 STISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKN 483

Query: 425 GLEMLKIFKSYSAKTSLLDDFNFYENKERSFHGKKSSKPATLQMDIFND-DDFTKQIKSA 483
            +E  +    +     +  DF F E K R  H   +   +   ++       +   I   
Sbjct: 484 -IEHPERMTLFR---MVFLDFRFLEQKIR--HDSTAWNASGSILNTLQQLKFYKPYICDN 537

Query: 484 EKEFDEDSISIIN----LTKNLSLKPCT-------QKKSEAVKNPVEKAI 522
           + +++    +I++    + +NL     T         + EA+     K +
Sbjct: 538 DPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQV 587

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	528
2yud_A	180	YTH domain-containing protein 1; structure genomic	100.0
2yu6_A	141	YTH domain-containing protein 2; structural genomi	100.0
2hd9_A	145	UPF0310 protein PH1033; pyrococcus horikoshii OT3,	95.9
2p5d_A	147	UPF0310 protein mjecl36; NPPSFA, national project	94.51

>2yud_A YTH domain-containing protein 1; structure genomics, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=100.00  E-value=1.6e-55  Score=416.66  Aligned_cols=165  Identities=29%  Similarity=0.519  Sum_probs=156.0

Q ss_pred             CcccCCCCCCCCCcccCCCCcEEEEEecCChhhHHHhhhcceeecCCcchhHHHHHHHHHHhhccccCCcccEEEEEEEC
Q 009696          271 SPTVSRDQYNLPDFQVEYEKAKFYVIKSYSEDDIHKCIKYDVWSSTPNGNKKLDATFNEAEAKADETGTRCPIFLFFSVN  350 (528)
Q Consensus       271 ~~~~~~~~yn~~df~~~~~~aRFFVIKS~nednIhkSikygVWaSt~~nnkkLd~AF~ea~~~~~~~~~~~pVyLfFSVN  350 (528)
                      ...+++|+||..++.  ++++|||||||++++|||+|++|||||||++||++|++||++++          +||||||||
T Consensus         8 ~~~~~~~~~~~~~~~--~~~arfFIIKS~s~~ni~~Sik~gvWatt~~n~~kL~~Af~~~~----------~V~L~FSVn   75 (180)
T 2yud_A            8 VRAVRKDQTSKLKYV--LQDARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSAR----------SVILIFSVR   75 (180)
T ss_dssp             CCCCCCCSSHHHHHH--TTTCEEEEEEESCHHHHHHHHHHTEECCCHHHHHHHHHHHHHSS----------CEEEEEEET
T ss_pred             hhhcchhhccccccc--cCceEEEEEEeCCHHHHHHHHHcCEeecccccHHHHHHHHhhCC----------eEEEEEEeC
Confidence            356889999998777  57999999999999999999999999999999999999999975          799999999


Q ss_pred             CCCceeEEEEeecccCCCCCchhhh------hccCCCccceEEEEEecCCCccccccccCCCCCCceeecCCCeeechHH
Q 009696          351 GSGQFVGLAEMMGKVDFNKDMDFWQ------LDKWNGFFPVKWHVIKDVPNTLLRHITLENNENKPVTHSRDTQEIGLKQ  424 (528)
Q Consensus       351 ~Sg~F~G~AeM~S~vd~~k~~~~W~------qdkw~G~F~VkWi~vkdVPf~~lrHI~N~~NeNKPVt~sRDgQEI~~~~  424 (528)
                      +||+|||||+|+|+++++....+|+      +++|+|.|+|+||+++||||..++||+|++||||||+++||||||++++
T Consensus        76 ~Sg~F~G~A~M~s~~~~~~~~~~W~~~~~~~~~~~~g~F~V~Wi~~~dvPf~~~~hl~n~~NenkpV~~sRDgqEI~~~~  155 (180)
T 2yud_A           76 ESGKFQGFARLSSESHHGGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNEHKPVKIGRDGQEIELEC  155 (180)
T ss_dssp             TTSEEEEEEEEEEEEECSSCCCCCCCCSSCCGGGGCSEEEEEEEECSCEEHHHHTTCCBTTTTSBCTTSCCTTEEECHHH
T ss_pred             CCCcEEEEEEEccCCCCCCCCccccccCccchhhcCCceEEEEEEeecCCchhhhhccccccCCCeeeeCCCCEEcCHHH
Confidence            9999999999999999998888996      4679999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCCCCCcCccchhhHhhhhh
Q 009696          425 GLEMLKIFKSYSAKTSLLDDFNFYENKERS  454 (528)
Q Consensus       425 G~qLLkIF~~~~~~tSilddF~~ye~rek~  454 (528)
                      |++||+||+.+       +++++|+.|+|.
T Consensus       156 G~~L~~lf~~~-------~~~~~~~~~~~~  178 (180)
T 2yud_A          156 GTQLCLLFPPD-------ESIDLYQVIHKM  178 (180)
T ss_dssp             HHHHHHHSCCC-------SSSCSHHHHHHH
T ss_pred             HHHHHHhcccC-------cCccHHHHHHhh
Confidence            99999999876       689999999986

>2yu6_A YTH domain-containing protein 2; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=100.00  E-value=8.9e-54  Score=390.88  Aligned_cols=137  Identities=28%  Similarity=0.548  Sum_probs=132.1

Q ss_pred             CCCcEEEEEecCChhhHHHhhhcceeecCCcchhHHHHHHHHHHhhccccCCcccEEEEEEECCCCceeEEEEeecccCC
Q 009696          288 YEKAKFYVIKSYSEDDIHKCIKYDVWSSTPNGNKKLDATFNEAEAKADETGTRCPIFLFFSVNGSGQFVGLAEMMGKVDF  367 (528)
Q Consensus       288 ~~~aRFFVIKS~nednIhkSikygVWaSt~~nnkkLd~AF~ea~~~~~~~~~~~pVyLfFSVN~Sg~F~G~AeM~S~vd~  367 (528)
                      ..++|||||||++++|||+|++||||+||++||++|++||++++          +||||||||+||||||||+|++++++
T Consensus         5 ~~~~rfFIiKS~s~~ni~~S~k~gvW~tt~~~~~~L~~Af~~~~----------~V~L~FSvn~Sg~F~G~A~M~s~~~~   74 (141)
T 2yu6_A            5 SSGVRYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESS----------IVYLVFSVQGSGHFQGFSRMSSEIGR   74 (141)
T ss_dssp             CCCCEEEEEEESSSHHHHHHHHTCEEECCTTSHHHHHHHHHHSS----------CEEEEEEESSSSEECEEEEECSCSSS
T ss_pred             CCCcEEEEEEeCCHHHHHHHHHcCEeeccCccHHHHHHHHhcCC----------cEEEEEEECCCCeEEEEEEEcccCCC
Confidence            46899999999999999999999999999999999999999974          89999999999999999999999999


Q ss_pred             CCCchhhhhccCCCccceEEEEEecCCCccccccccCCCCCCceeecCCCeeechHHHHHHHHHHhhc
Q 009696          368 NKDMDFWQLDKWNGFFPVKWHVIKDVPNTLLRHITLENNENKPVTHSRDTQEIGLKQGLEMLKIFKSY  435 (528)
Q Consensus       368 ~k~~~~W~qdkw~G~F~VkWi~vkdVPf~~lrHI~N~~NeNKPVt~sRDgQEI~~~~G~qLLkIF~~~  435 (528)
                       ....+|++++|+|.|+|+||+++||||..++||+|++||||||+++||||||++++|++||+||+++
T Consensus        75 -~~~~~W~~~~~~g~F~V~Wi~~~~vpf~~~~hl~n~~N~nk~V~~~RDgqEi~~~~G~~l~~if~~~  141 (141)
T 2yu6_A           75 -EKSQDWGSAGLGGVFKVEWIRKESLPFQFAHHLLNPWNDNKKVQISRDGQELEPQVGEQLLQLWERL  141 (141)
T ss_dssp             -CCCCCCSCSCCCCEEEEEEEECSCEEHHHHTSCEETTSTTEETTCCCTTEEECTTHHHHHHGGGGTC
T ss_pred             -CCCccccccccCCcEEEEEEEeecCChHHhhhcccccCCCCeEEeCCCCEEcCHHHHHHHHHHHhhC
Confidence             5667899999999999999999999999999999999999999999999999999999999999864

>2hd9_A UPF0310 protein PH1033; pyrococcus horikoshii OT3, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: CIT; 1.35A {Pyrococcus horikoshii} SCOP: b.122.1.8 PDB: 1wmm_A* 2zbn_A

Probab=95.90  E-value=0.016  Score=52.74  Aligned_cols=125  Identities=11%  Similarity=0.147  Sum_probs=80.9

Q ss_pred             EEEEEecCChhhHHHhhhcceeecCCcchhHHHHHHHHHHhhccccCCcccEEEEEEECCC--------CceeEEEEeec
Q 009696          292 KFYVIKSYSEDDIHKCIKYDVWSSTPNGNKKLDATFNEAEAKADETGTRCPIFLFFSVNGS--------GQFVGLAEMMG  363 (528)
Q Consensus       292 RFFVIKS~nednIhkSikygVWaSt~~nnkkLd~AF~ea~~~~~~~~~~~pVyLfFSVN~S--------g~F~G~AeM~S  363 (528)
                      +|.++|| +.|++....+.|+|-. .+..+.    +-.+-       ..+...|||+-+..        ..|.|+|++++
T Consensus         2 ~YWL~ks-s~d~~~~~~~~g~~GV-n~~arn----~lr~m-------k~GD~~~fYhs~~~~~~~~~~~~~ivGi~eV~~   68 (145)
T 2hd9_A            2 TYWICIT-NRENWEVIKRHNVWGV-PKKHKN----TLSRV-------KPGDKLVIYVRQEKDKEGNLLEPKIVGIYEVTS   68 (145)
T ss_dssp             CEEEEEE-CHHHHHHHHHHCEEEE-CGGGHH----HHTTC-------CTTCEEEEEECCEECTTCCEECCEEEEEEEECS
T ss_pred             ceEEEeC-CHHHHHHHHHcCcccc-CHHHHH----HHHhC-------CCCCEEEEEEccccccCCCCCCceEEEEEEEcC
Confidence            5899998 8999999999999976 444332    22211       24568888887665        79999999998


Q ss_pred             ccCCCCCchhhhhccC-----CCccceEEEEEecCCCccccccccCCCCC-----CceeecCCCeeechHHHHHHHHHH
Q 009696          364 KVDFNKDMDFWQLDKW-----NGFFPVKWHVIKDVPNTLLRHITLENNEN-----KPVTHSRDTQEIGLKQGLEMLKIF  432 (528)
Q Consensus       364 ~vd~~k~~~~W~qdkw-----~G~F~VkWi~vkdVPf~~lrHI~N~~NeN-----KPVt~sRDgQEI~~~~G~qLLkIF  432 (528)
                      ..-.+.+ .+|...+|     --...|+++.+..||+..++. .+.+=.|     .++ .-+--++|+.+....||+.+
T Consensus        69 e~y~D~t-~~~~~~~~~~~~~p~rv~v~~v~~~~i~~~~l~~-~l~fi~~k~~w~~~l-~r~gv~pV~~~d~~~I~~~m  144 (145)
T 2hd9_A           69 EPYVDFS-RIFKPHRGGKETYPYRVKIKPIKIGEINFKPLIN-DLKFIKNKKRWSMHF-FGKAMRELPEEDYKLIEKLL  144 (145)
T ss_dssp             CCEECCC-CCSCCTTSSCCCCCEEEEEEEEEEEEEESGGGGG-GCTTCCCSTTGGGGT-TTCSEEEECHHHHHHHHHHC
T ss_pred             CcEeCCC-ccCCCcccccCCeeEEEeCEEEeeccCcHHHHHh-hhhhhccccccccee-cccCceEcCHHHHHHHHHhh
Confidence            6543322 12222222     124568898889999887765 3332221     112 02337999999999988754

>2p5d_A UPF0310 protein mjecl36; NPPSFA, national project on protein structural and functional analyses; 1.70A {Methanocaldococcus jannaschii}

Probab=94.51  E-value=0.075  Score=48.37  Aligned_cols=124  Identities=12%  Similarity=0.151  Sum_probs=76.4

Q ss_pred             cEEEEEecCChhhHHHhhhcceeecCCcchhHHHHHHHHHHhhccccCCcccEEEEEEEC--C----CCceeEEEEeecc
Q 009696          291 AKFYVIKSYSEDDIHKCIKYDVWSSTPNGNKKLDATFNEAEAKADETGTRCPIFLFFSVN--G----SGQFVGLAEMMGK  364 (528)
Q Consensus       291 aRFFVIKS~nednIhkSikygVWaSt~~nnkkLd~AF~ea~~~~~~~~~~~pVyLfFSVN--~----Sg~F~G~AeM~S~  364 (528)
                      .+|.|+||. ++++...++.|+|-. .+..+.+-+    +-       ..+...||+...  .    -..|.|+|++++.
T Consensus         4 m~YWL~~se-~~~~~~~~~~g~wGV-n~~arn~lr----~M-------k~GD~~~fY~~~~~hs~~~~~~ivGi~eV~~e   70 (147)
T 2p5d_A            4 MAYWLCITN-EDNWKVIKEKKIWGV-AERYKNTIN----KV-------KVGDKLIIYEIQRSGKDYKPPYIRGVYEVVSE   70 (147)
T ss_dssp             CCEEEEEEC-HHHHHHHHHHCEEEE-CGGGHHHHT----TC-------CTTCEEEEEECCBCSTTCBCCEEEEEEEECSC
T ss_pred             ccceeeecC-HHHHHHHHHcCeeec-CHHHHHHHH----hC-------CCCCEEEEEEecccCCCCCCCEEEEEEEEecc
Confidence            469999886 677999999999966 433222111    11       234677777333  3    3589999999985


Q ss_pred             cCCCCCchhhhh------ccCCCccceEEEEE--ecCCCcccc----ccccCCC-CCCceeecCCCeeechHHHHHHHH
Q 009696          365 VDFNKDMDFWQL------DKWNGFFPVKWHVI--KDVPNTLLR----HITLENN-ENKPVTHSRDTQEIGLKQGLEMLK  430 (528)
Q Consensus       365 vd~~k~~~~W~q------dkw~G~F~VkWi~v--kdVPf~~lr----HI~N~~N-eNKPVt~sRDgQEI~~~~G~qLLk  430 (528)
                      .-.+. ..||..      +..--..+|+++..  ..||...|+    +|++.-. .+.-|..+  -++|+.+.-..||+
T Consensus        71 ~y~D~-t~~dp~~~y~~~~~~w~~VdV~~v~~~~~~v~L~~Lk~~L~fi~~~~~~~~~L~r~g--v~pV~~~~~~~I~~  146 (147)
T 2p5d_A           71 VYKDS-SKIFKPTPRNPNEKFPYRVKLKEIKVFEPPINFKELIPKLKFITNKKRWSGHLMGKA--MREIPEEDYKLIVG  146 (147)
T ss_dssp             CEECC-CCCSCCBTTBTTCCCCEEEEEEEEEEEEEEEEHHHHGGGCTTCCCSSSCCC--CCCS--EEEECHHHHHHHHT
T ss_pred             cccCC-cccCcCccCcCCCCCceEEEEEEEeecCCccCHHHHHhhhhhcccchhhHHHHhcCC--ceECCHHHHHHHHh
Confidence            43222 112221      22223688999988  889888777    2222211 22224555  89999998888875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	528
d2hd9a1	145	Hypothetical protein PH1033 {Pyrococcus horikoshii	93.72

>d2hd9a1 b.122.1.8 (A:1-145) Hypothetical protein PH1033 {Pyrococcus horikoshii [TaxId: 53953]}

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: Atu2648/PH1033-like
domain: Hypothetical protein PH1033
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=93.72  E-value=0.06  Score=46.76  Aligned_cols=124  Identities=11%  Similarity=0.153  Sum_probs=75.4

Q ss_pred             EEEEecCChhhHHHhhhcceeecCCcchhHHHHHHHHHHhhccccCCcccEEEEEEECCC--------CceeEEEEeecc
Q 009696          293 FYVIKSYSEDDIHKCIKYDVWSSTPNGNKKLDATFNEAEAKADETGTRCPIFLFFSVNGS--------GQFVGLAEMMGK  364 (528)
Q Consensus       293 FFVIKS~nednIhkSikygVWaSt~~nnkkLd~AF~ea~~~~~~~~~~~pVyLfFSVN~S--------g~F~G~AeM~S~  364 (528)
                      |+|+=+ |+|++...++.|+|.......+.|+..            ..+.-+|||+....        +.|.|+++.++.
T Consensus         3 YWi~v~-s~e~~~~~~~~g~~~~~~~k~~~~~ri------------kpGD~li~Y~~~~~~~~~~~~~q~f~ai~~V~~~   69 (145)
T d2hd9a1           3 YWICIT-NRENWEVIKRHNVWGVPKKHKNTLSRV------------KPGDKLVIYVRQEKDKEGNLLEPKIVGIYEVTSE   69 (145)
T ss_dssp             EEEEEE-CHHHHHHHHHHCEEEECGGGHHHHTTC------------CTTCEEEEEECCEECTTCCEECCEEEEEEEECSC
T ss_pred             eEEEeC-CHHHHHHHHhCCEEeccCCchhhHhhC------------CCCCEEEEEeCccccCCCcccccEEEEEEEEecc
Confidence            454444 799999999999999864432222211            24567888875432        479999999987


Q ss_pred             cCCCCCchhhhhccCCC-----ccceEEEEEecCCCccccccccCCCCCCc---eeecCC-CeeechHHHHHHHHH
Q 009696          365 VDFNKDMDFWQLDKWNG-----FFPVKWHVIKDVPNTLLRHITLENNENKP---VTHSRD-TQEIGLKQGLEMLKI  431 (528)
Q Consensus       365 vd~~k~~~~W~qdkw~G-----~F~VkWi~vkdVPf~~lrHI~N~~NeNKP---Vt~sRD-gQEI~~~~G~qLLkI  431 (528)
                      ...+.+ ..|...+.++     .++|+|+.+.+||+..+.- +++.-.||.   ...-|. -.||+.+....|-++
T Consensus        70 ~~~d~t-~i~~~~~~~~~~~P~R~~v~~~~~~ev~i~~l~~-~L~fi~~k~~W~~y~~r~g~~~I~~~D~~lI~~~  143 (145)
T d2hd9a1          70 PYVDFS-RIFKPHRGGKETYPYRVKIKPIKIGEINFKPLIN-DLKFIKNKKRWSMHFFGKAMRELPEEDYKLIEKL  143 (145)
T ss_dssp             CEECCC-CCSCCTTSSCCCCCEEEEEEEEEEEEEESGGGGG-GCTTCCCSTTGGGGTTTCSEEEECHHHHHHHHHH
T ss_pred             ceeccc-ccccccccCCceEEEEEEeEEeecccccHHHHHh-HHHhhcCchhhhHHHhcCCceecCHHHHHHHHHH
Confidence            655443 3465444332     4779999999999865321 111123322   222343 346877766665543