Citrus Sinensis ID: 009703
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 528 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SGE9 | 598 | Probable phenylalanine--t | yes | no | 0.969 | 0.856 | 0.760 | 0.0 | |
| Q9VCA5 | 589 | Probable phenylalanine--t | yes | no | 0.958 | 0.859 | 0.543 | 1e-163 | |
| Q9NSD9 | 589 | Phenylalanine--tRNA ligas | yes | no | 0.960 | 0.860 | 0.519 | 1e-153 | |
| Q19713 | 591 | Phenylalanine--tRNA ligas | yes | no | 0.960 | 0.857 | 0.518 | 1e-152 | |
| Q9WUA2 | 589 | Phenylalanine--tRNA ligas | yes | no | 0.960 | 0.860 | 0.521 | 1e-152 | |
| Q5R7F7 | 589 | Phenylalanine--tRNA ligas | yes | no | 0.960 | 0.860 | 0.515 | 1e-151 | |
| Q550D2 | 617 | Phenylalanine--tRNA ligas | yes | no | 0.956 | 0.818 | 0.484 | 1e-142 | |
| O13432 | 592 | Phenylalanine--tRNA ligas | N/A | no | 0.939 | 0.837 | 0.486 | 1e-138 | |
| O42849 | 589 | Phenylalanine--tRNA ligas | yes | no | 0.937 | 0.840 | 0.477 | 1e-135 | |
| P15624 | 595 | Phenylalanine--tRNA ligas | yes | no | 0.933 | 0.828 | 0.468 | 1e-134 |
| >sp|Q9SGE9|SYFB_ARATH Probable phenylalanine--tRNA ligase beta subunit OS=Arabidopsis thaliana GN=At1g72550 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 814 bits (2102), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 390/513 (76%), Positives = 457/513 (89%), Gaps = 1/513 (0%)
Query: 1 MPTVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDE 60
MPT+SVGRDRLFAALG+SYT+E+FE+LCF FGIELDDVTTEKAIIRKEKH+DEE D++ E
Sbjct: 1 MPTISVGRDRLFAALGESYTQEKFEELCFSFGIELDDVTTEKAIIRKEKHIDEEADDD-E 59
Query: 61 EVIYKIEVPANRYDLLCLEGIAQALRVFNKQQEIPKYTLSDVSKDSMLQMHVKPETSSIR 120
E+IYKIE+PANR DLLCLEG+AQ+LRVF ++QEIP YTL+D+SKD +LQM+VKPETS IR
Sbjct: 60 EIIYKIEIPANRPDLLCLEGLAQSLRVFIEKQEIPTYTLADISKDKILQMNVKPETSKIR 119
Query: 121 PYVVCAVLRDISFDEASYNSFIDLQDKLHQNICRRRTLVAIGTHDLDTLQGPFTYEALPP 180
P+VVCAVLR ++FDEA YNSFIDLQDKLHQNICRRR+LVAIGTHDLDTLQGPFTYEALPP
Sbjct: 120 PFVVCAVLRGVTFDEARYNSFIDLQDKLHQNICRRRSLVAIGTHDLDTLQGPFTYEALPP 179
Query: 181 SHINFVPLKQTRDFTADELMEFYKSDLKLKKYLHIIENSPLYPVLYDQNRTVLSLPPIIN 240
+ INFVPLKQT+ F ADEL+EFYKSD+KLKK+LHIIENSP++PVLYD RTVLSLPPIIN
Sbjct: 180 TDINFVPLKQTKSFRADELIEFYKSDMKLKKFLHIIENSPVFPVLYDSKRTVLSLPPIIN 239
Query: 241 GAHSAITLKTKNVFIECTATDLTKAKIVLNTMVTIFSEYCKRKYQVEPVEVVYADGRSYV 300
GAHSAITL+TKNVFIECTATDLTKAKIVLNTMVT FSE+C RK+++EPVEV Y DG+SY+
Sbjct: 240 GAHSAITLQTKNVFIECTATDLTKAKIVLNTMVTTFSEFCARKFEIEPVEVTYDDGKSYI 299
Query: 301 YPDLSAYNMEVSLSYINHTIGVSLEAEEVTSLLNRMQLHAERSASGNNQWNINVLVPPTR 360
YPDL+ Y+MEV LS+I +IGVSL+ E+VTSLL RMQL AE++ S +NQ I V VPP+R
Sbjct: 300 YPDLAVYDMEVPLSFITDSIGVSLKVEQVTSLLTRMQLQAEQAKSSDNQCAIKVHVPPSR 359
Query: 361 SDVLHPCDVMEDVAIAYGYNNIPKRKPASVKPLALNEFSDLMRLEIAMNGFTEVLTWILC 420
SDVLHPCDVMEDVAIAYG+NNIP RKPAS+KPL LNE +DL+R+EIAM +TEV+TW+LC
Sbjct: 360 SDVLHPCDVMEDVAIAYGFNNIPTRKPASIKPLTLNELTDLLRIEIAMCVYTEVVTWLLC 419
Query: 421 SSKEISTMLNRQTDESTAVVGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIKIYEVGD 480
S KE MLNR+ S +VGNPR++DFE +R LMPG+LKT+GHN +PKPIKI+E+ D
Sbjct: 420 SHKENFAMLNREDVNSAVIVGNPRSADFEAMRRALMPGLLKTVGHNNKYPKPIKIFEISD 479
Query: 481 VVLLDEKKDVGASCRRRLAALYCGANSGFEVIY 513
VV+LDE KDVGAS RR LAALYCGA SGFE+I+
Sbjct: 480 VVMLDESKDVGASNRRHLAALYCGATSGFELIH 512
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Arabidopsis thaliana (taxid: 3702) EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 0 |
| >sp|Q9VCA5|SYFB_DROME Probable phenylalanine--tRNA ligase beta subunit OS=Drosophila melanogaster GN=CG5706 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9NSD9|SYFB_HUMAN Phenylalanine--tRNA ligase beta subunit OS=Homo sapiens GN=FARSB PE=1 SV=3 | Back alignment and function description |
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| >sp|Q19713|SYFB_CAEEL Phenylalanine--tRNA ligase beta subunit OS=Caenorhabditis elegans GN=frs-2 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q9WUA2|SYFB_MOUSE Phenylalanine--tRNA ligase beta subunit OS=Mus musculus GN=Farsb PE=2 SV=2 | Back alignment and function description |
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| >sp|Q5R7F7|SYFB_PONAB Phenylalanine--tRNA ligase beta subunit OS=Pongo abelii GN=FARSB PE=2 SV=1 | Back alignment and function description |
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| >sp|Q550D2|SYFB_DICDI Phenylalanine--tRNA ligase beta subunit OS=Dictyostelium discoideum GN=phesB PE=3 SV=2 | Back alignment and function description |
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| >sp|O13432|SYFB_CANAX Phenylalanine--tRNA ligase beta subunit OS=Candida albicans GN=FRS1 PE=2 SV=3 | Back alignment and function description |
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| >sp|O42849|SYFB_SCHPO Phenylalanine--tRNA ligase beta subunit OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=frs1 PE=3 SV=1 | Back alignment and function description |
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| >sp|P15624|SYFB_YEAST Phenylalanine--tRNA ligase beta subunit OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FRS1 PE=1 SV=3 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 528 | ||||||
| 255564405 | 593 | phenylalanyl-tRNA synthetase beta chain, | 0.971 | 0.865 | 0.789 | 0.0 | |
| 224122624 | 595 | predicted protein [Populus trichocarpa] | 0.971 | 0.862 | 0.794 | 0.0 | |
| 224123942 | 598 | predicted protein [Populus trichocarpa] | 0.971 | 0.857 | 0.789 | 0.0 | |
| 297842003 | 591 | hypothetical protein ARALYDRAFT_476389 [ | 0.969 | 0.866 | 0.781 | 0.0 | |
| 449440866 | 591 | PREDICTED: probable phenylalanine--tRNA | 0.967 | 0.864 | 0.789 | 0.0 | |
| 225455762 | 592 | PREDICTED: probable phenylalanyl-tRNA sy | 0.975 | 0.869 | 0.785 | 0.0 | |
| 357477763 | 589 | hypothetical protein MTR_4g112680 [Medic | 0.967 | 0.867 | 0.763 | 0.0 | |
| 357477759 | 613 | hypothetical protein MTR_4g112680 [Medic | 0.967 | 0.833 | 0.763 | 0.0 | |
| 30698883 | 584 | phenylalanyl-tRNA synthetase beta chain | 0.969 | 0.876 | 0.760 | 0.0 | |
| 15218527 | 598 | phenylalanyl-tRNA synthetase beta chain | 0.969 | 0.856 | 0.760 | 0.0 |
| >gi|255564405|ref|XP_002523199.1| phenylalanyl-tRNA synthetase beta chain, putative [Ricinus communis] gi|223537606|gb|EEF39230.1| phenylalanyl-tRNA synthetase beta chain, putative [Ricinus communis] | Back alignment and taxonomy information |
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Score = 857 bits (2213), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/514 (78%), Positives = 462/514 (89%), Gaps = 1/514 (0%)
Query: 1 MPTVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDE 60
MPTV+V RDRLFAALG++YT+EEF+DLCF FGIELDDVTT++ I RKE+H +E DE
Sbjct: 1 MPTVNVSRDRLFAALGRTYTEEEFDDLCFRFGIELDDVTTDEGINRKERHEEEGKGNEDE 60
Query: 61 EVIYKIEVPANRYDLLCLEGIAQALRVFNKQQEIPKYTLSDVSKDSMLQMHVKPETSSIR 120
E+IYKIEVPANRYDLLCLEGIAQALR+FNKQ+E PKYTL+++SK +ML+MHVKPETSSIR
Sbjct: 61 EIIYKIEVPANRYDLLCLEGIAQALRIFNKQEETPKYTLANISKQAMLKMHVKPETSSIR 120
Query: 121 PYVVCAVLRDISFDEASYNSFIDLQDKLHQNICRRRTLVAIGTHDLDTLQGPFTYEALPP 180
PYVVCAVLRD++FDEASYNSFIDLQDKLHQNICRRRTLVAIGTHDLD LQGPFTYEALPP
Sbjct: 121 PYVVCAVLRDMTFDEASYNSFIDLQDKLHQNICRRRTLVAIGTHDLDMLQGPFTYEALPP 180
Query: 181 SHINFVPLKQTRDFTADELMEFYKSDLKLKKYLHIIENSPLYPVLYDQNRTVLSLPPIIN 240
INFVPLKQ +++ AD+LMEFY++DLKLKK+LHIIENSP++P+LYD RTVLSLPPIIN
Sbjct: 181 QDINFVPLKQVKNYRADQLMEFYRNDLKLKKFLHIIENSPVFPILYDSRRTVLSLPPIIN 240
Query: 241 GAHSAITLKTKNVFIECTATDLTKAKIVLNTMVTIFSEYCKRKYQVEPVEVVYADGRSYV 300
GAHSAITLKTKNVFIECTATDLTKAKIVLNTMVTIFS YCK+K++VEPVEV+Y DG+S V
Sbjct: 241 GAHSAITLKTKNVFIECTATDLTKAKIVLNTMVTIFSAYCKKKFEVEPVEVIYPDGKSNV 300
Query: 301 YPDLSAYNMEVSLSYINHTIGVSLEAEEVTSLLNRMQLHAERSASGNNQWNINVLVPPTR 360
YPDLS YNMEV LSYI +IGVSL+ EE+TSLLNRMQLHAE+S S +Q INV +PPTR
Sbjct: 301 YPDLSVYNMEVPLSYITGSIGVSLKTEEITSLLNRMQLHAEQSVSNADQCTINVSIPPTR 360
Query: 361 SDVLHPCDVMEDVAIAYGYNNIPKRKPASVKPLALNEFSDLMRLEIAMNGFTEVLTWILC 420
SDVLHPCDVMEDVAIAYGYNNIPKRK S+KPLALN+ DL+R+E+AMNGFTEVLTWILC
Sbjct: 361 SDVLHPCDVMEDVAIAYGYNNIPKRKLPSLKPLALNQLEDLIRVEVAMNGFTEVLTWILC 420
Query: 421 SSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIKIYEVG 479
S +E MLNR+ D STAV VGNPR+SDFEVVRT+LMPG LK +GHNKDHPKPIKI+EVG
Sbjct: 421 SYRENFGMLNRKDDGSTAVIVGNPRSSDFEVVRTSLMPGALKIVGHNKDHPKPIKIFEVG 480
Query: 480 DVVLLDEKKDVGASCRRRLAALYCGANSGFEVIY 513
D+ LD+ KDVGA+ RR LAALYCG NSGFE+I+
Sbjct: 481 DIAKLDDSKDVGAANRRLLAALYCGTNSGFELIH 514
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224122624|ref|XP_002330528.1| predicted protein [Populus trichocarpa] gi|222872462|gb|EEF09593.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|224123942|ref|XP_002319202.1| predicted protein [Populus trichocarpa] gi|222857578|gb|EEE95125.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|297842003|ref|XP_002888883.1| hypothetical protein ARALYDRAFT_476389 [Arabidopsis lyrata subsp. lyrata] gi|297334724|gb|EFH65142.1| hypothetical protein ARALYDRAFT_476389 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|449440866|ref|XP_004138205.1| PREDICTED: probable phenylalanine--tRNA ligase beta subunit-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|225455762|ref|XP_002269751.1| PREDICTED: probable phenylalanyl-tRNA synthetase beta chain [Vitis vinifera] gi|297734128|emb|CBI15375.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|357477763|ref|XP_003609167.1| hypothetical protein MTR_4g112680 [Medicago truncatula] gi|355510222|gb|AES91364.1| hypothetical protein MTR_4g112680 [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|357477759|ref|XP_003609165.1| hypothetical protein MTR_4g112680 [Medicago truncatula] gi|355510220|gb|AES91362.1| hypothetical protein MTR_4g112680 [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|30698883|ref|NP_849879.1| phenylalanyl-tRNA synthetase beta chain [Arabidopsis thaliana] gi|332197218|gb|AEE35339.1| phenylalanyl-tRNA synthetase beta chain [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|15218527|ref|NP_177399.1| phenylalanyl-tRNA synthetase beta chain [Arabidopsis thaliana] gi|12644590|sp|Q9SGE9.1|SYFB_ARATH RecName: Full=Probable phenylalanine--tRNA ligase beta subunit; AltName: Full=Phenylalanyl-tRNA synthetase beta subunit; Short=PheRS gi|12323785|gb|AAG51865.1|AC010926_28 putative phenylalanyl-tRNA synthetase beta-subunit; PheHB; 86609-90570 [Arabidopsis thaliana] gi|17065262|gb|AAL32785.1| putative phenylalanyl-tRNA synthetase beta-subunit; PheHB [Arabidopsis thaliana] gi|22136234|gb|AAM91195.1| putative phenylalanyl-tRNA synthetase beta-subunit; PheHB [Arabidopsis thaliana] gi|332197217|gb|AEE35338.1| phenylalanyl-tRNA synthetase beta chain [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 528 | ||||||
| TAIR|locus:2030290 | 598 | AT1G72550 [Arabidopsis thalian | 0.969 | 0.856 | 0.762 | 2.5e-216 | |
| FB|FBgn0039175 | 589 | CG5706 [Drosophila melanogaste | 0.956 | 0.857 | 0.548 | 7.9e-149 | |
| ZFIN|ZDB-GENE-021206-2 | 590 | farsb "phenylalanyl-tRNA synth | 0.962 | 0.861 | 0.547 | 2.7e-148 | |
| UNIPROTKB|Q5ZJ61 | 589 | FARSB "Uncharacterized protein | 0.962 | 0.862 | 0.528 | 4.6e-144 | |
| UNIPROTKB|F6XQ20 | 589 | FARSB "Uncharacterized protein | 0.958 | 0.859 | 0.526 | 4.2e-143 | |
| UNIPROTKB|A8E4P2 | 589 | FARSB "Uncharacterized protein | 0.960 | 0.860 | 0.521 | 5.5e-141 | |
| UNIPROTKB|Q9NSD9 | 589 | FARSB "Phenylalanine--tRNA lig | 0.958 | 0.859 | 0.524 | 5.5e-141 | |
| RGD|1303210 | 589 | Farsb "phenylalanyl-tRNA synth | 0.958 | 0.859 | 0.524 | 6.3e-140 | |
| MGI|MGI:1346035 | 589 | Farsb "phenylalanyl-tRNA synth | 0.958 | 0.859 | 0.524 | 3.5e-139 | |
| WB|WBGene00001498 | 591 | fars-3 [Caenorhabditis elegans | 0.958 | 0.856 | 0.523 | 9.2e-139 |
| TAIR|locus:2030290 AT1G72550 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2090 (740.8 bits), Expect = 2.5e-216, P = 2.5e-216
Identities = 391/513 (76%), Positives = 457/513 (89%)
Query: 1 MPTVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDE 60
MPT+SVGRDRLFAALG+SYT+E+FE+LCF FGIELDDVTTEKAIIRKEKH+DEE D+ DE
Sbjct: 1 MPTISVGRDRLFAALGESYTQEKFEELCFSFGIELDDVTTEKAIIRKEKHIDEEADD-DE 59
Query: 61 EVIYKIEVPANRYDLLCLEGIAQALRVFNKQQEIPKYTLSDVSKDSMLQMHVKPETSSIR 120
E+IYKIE+PANR DLLCLEG+AQ+LRVF ++QEIP YTL+D+SKD +LQM+VKPETS IR
Sbjct: 60 EIIYKIEIPANRPDLLCLEGLAQSLRVFIEKQEIPTYTLADISKDKILQMNVKPETSKIR 119
Query: 121 PYVVCAVLRDISFDEASYNSFIDLQDKLHQNICRRRTLVAIGTHDLDTLQGPFTYEALPP 180
P+VVCAVLR ++FDEA YNSFIDLQDKLHQNICRRR+LVAIGTHDLDTLQGPFTYEALPP
Sbjct: 120 PFVVCAVLRGVTFDEARYNSFIDLQDKLHQNICRRRSLVAIGTHDLDTLQGPFTYEALPP 179
Query: 181 SHINFVPLKQTRDFTADELMEFYKSDLKLKKYLHIIENSPLYPVLYDQNRTVLSLPPIIN 240
+ INFVPLKQT+ F ADEL+EFYKSD+KLKK+LHIIENSP++PVLYD RTVLSLPPIIN
Sbjct: 180 TDINFVPLKQTKSFRADELIEFYKSDMKLKKFLHIIENSPVFPVLYDSKRTVLSLPPIIN 239
Query: 241 GAHSAITLKTKNVFIECTATDLTKAKIVLNTMVTIFSEYCKRKYQVEPVEVVYADGRSYV 300
GAHSAITL+TKNVFIECTATDLTKAKIVLNTMVT FSE+C RK+++EPVEV Y DG+SY+
Sbjct: 240 GAHSAITLQTKNVFIECTATDLTKAKIVLNTMVTTFSEFCARKFEIEPVEVTYDDGKSYI 299
Query: 301 YPDLSAYNMEVSLSYINHTIGVSLEAEEVTSLLNRMQLHAERSASGNNQWNINVLVPPTR 360
YPDL+ Y+MEV LS+I +IGVSL+ E+VTSLL RMQL AE++ S +NQ I V VPP+R
Sbjct: 300 YPDLAVYDMEVPLSFITDSIGVSLKVEQVTSLLTRMQLQAEQAKSSDNQCAIKVHVPPSR 359
Query: 361 SDVLHPCDVMEDVAIAYGYNNIPKRKPASVKPLALNEFSDLMRLEIAMNGFTEVLTWILC 420
SDVLHPCDVMEDVAIAYG+NNIP RKPAS+KPL LNE +DL+R+EIAM +TEV+TW+LC
Sbjct: 360 SDVLHPCDVMEDVAIAYGFNNIPTRKPASIKPLTLNELTDLLRIEIAMCVYTEVVTWLLC 419
Query: 421 SSKEISTMLNRQTDESTAVVGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIKIYEVGD 480
S KE MLNR+ S +VGNPR++DFE +R LMPG+LKT+GHN +PKPIKI+E+ D
Sbjct: 420 SHKENFAMLNREDVNSAVIVGNPRSADFEAMRRALMPGLLKTVGHNNKYPKPIKIFEISD 479
Query: 481 VVLLDEKKDVGASCRRRLAALYCGANSGFEVIY 513
VV+LDE KDVGAS RR LAALYCGA SGFE+I+
Sbjct: 480 VVMLDESKDVGASNRRHLAALYCGATSGFELIH 512
|
|
| FB|FBgn0039175 CG5706 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-021206-2 farsb "phenylalanyl-tRNA synthetase, beta subunit" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q5ZJ61 FARSB "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F6XQ20 FARSB "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|A8E4P2 FARSB "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q9NSD9 FARSB "Phenylalanine--tRNA ligase beta subunit" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| RGD|1303210 Farsb "phenylalanyl-tRNA synthetase, beta subunit" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:1346035 Farsb "phenylalanyl-tRNA synthetase, beta subunit" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| WB|WBGene00001498 fars-3 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| B6YTJ3 | SYFB_THEON | 6, ., 1, ., 1, ., 2, 0 | 0.3178 | 0.8825 | 0.8146 | yes | no |
| Q8U260 | SYFB_PYRFU | 6, ., 1, ., 1, ., 2, 0 | 0.3242 | 0.8996 | 0.8543 | yes | no |
| B1L7C0 | SYFB_KORCO | 6, ., 1, ., 1, ., 2, 0 | 0.3276 | 0.9147 | 0.8687 | yes | no |
| O73984 | SYFB_PYRHO | 6, ., 1, ., 1, ., 2, 0 | 0.3145 | 0.8977 | 0.8525 | yes | no |
| O42849 | SYFB_SCHPO | 6, ., 1, ., 1, ., 2, 0 | 0.4778 | 0.9375 | 0.8404 | yes | no |
| C6A237 | SYFB_THESM | 6, ., 1, ., 1, ., 2, 0 | 0.3194 | 0.8787 | 0.8285 | yes | no |
| P15624 | SYFB_YEAST | 6, ., 1, ., 1, ., 2, 0 | 0.4684 | 0.9337 | 0.8285 | yes | no |
| Q19713 | SYFB_CAEEL | 6, ., 1, ., 1, ., 2, 0 | 0.5183 | 0.9602 | 0.8578 | yes | no |
| Q76KA7 | SYFB_PYRKO | 6, ., 1, ., 1, ., 2, 0 | 0.3140 | 0.8806 | 0.8101 | yes | no |
| Q9VCA5 | SYFB_DROME | 6, ., 1, ., 1, ., 2, 0 | 0.5435 | 0.9583 | 0.8590 | yes | no |
| Q8SS40 | SYFB_ENCCU | 6, ., 1, ., 1, ., 2, 0 | 0.3740 | 0.8825 | 0.8366 | yes | no |
| Q9SGE9 | SYFB_ARATH | 6, ., 1, ., 1, ., 2, 0 | 0.7602 | 0.9696 | 0.8561 | yes | no |
| Q9NSD9 | SYFB_HUMAN | 6, ., 1, ., 1, ., 2, 0 | 0.5193 | 0.9602 | 0.8607 | yes | no |
| Q550D2 | SYFB_DICDI | 6, ., 1, ., 1, ., 2, 0 | 0.4841 | 0.9564 | 0.8184 | yes | no |
| Q5R7F7 | SYFB_PONAB | 6, ., 1, ., 1, ., 2, 0 | 0.5154 | 0.9602 | 0.8607 | yes | no |
| Q9UYX2 | SYFB_PYRAB | 6, ., 1, ., 1, ., 2, 0 | 0.3203 | 0.8977 | 0.8525 | yes | no |
| C5A5Z0 | SYFB_THEGJ | 6, ., 1, ., 1, ., 2, 0 | 0.3085 | 0.8958 | 0.8327 | yes | no |
| Q9WUA2 | SYFB_MOUSE | 6, ., 1, ., 1, ., 2, 0 | 0.5212 | 0.9602 | 0.8607 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 6.1.1.20 | 0.914 |
| 3rd Layer | 6.1.1 | 0.921 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 528 | |||
| PLN02265 | 597 | PLN02265, PLN02265, probable phenylalanyl-tRNA syn | 0.0 | |
| PRK09616 | 552 | PRK09616, pheT, phenylalanyl-tRNA synthetase subun | 1e-142 | |
| TIGR00471 | 551 | TIGR00471, pheT_arch, phenylalanyl-tRNA synthetase | 1e-134 | |
| COG0072 | 650 | COG0072, PheT, Phenylalanyl-tRNA synthetase beta s | 3e-81 | |
| PRK00629 | 791 | PRK00629, pheT, phenylalanyl-tRNA synthetase subun | 2e-30 | |
| smart00873 | 174 | smart00873, B3_4, B3/4 domain | 2e-27 | |
| TIGR00472 | 797 | TIGR00472, pheT_bact, phenylalanyl-tRNA synthetase | 2e-24 | |
| cd00769 | 198 | cd00769, PheRS_beta_core, Phenylalanyl-tRNA synthe | 4e-20 | |
| smart00874 | 68 | smart00874, B5, tRNA synthetase B5 domain | 2e-18 | |
| pfam03483 | 159 | pfam03483, B3_4, B3/4 domain | 1e-16 | |
| pfam03484 | 70 | pfam03484, B5, tRNA synthetase B5 domain | 4e-16 | |
| CHL00192 | 704 | CHL00192, syfB, phenylalanyl-tRNA synthetase beta | 1e-08 |
| >gnl|CDD|215149 PLN02265, PLN02265, probable phenylalanyl-tRNA synthetase beta chain | Back alignment and domain information |
|---|
Score = 1020 bits (2640), Expect = 0.0
Identities = 403/520 (77%), Positives = 454/520 (87%), Gaps = 9/520 (1%)
Query: 1 MPTVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDEN-- 58
MPTVSVGRDRLFAALG++YT+EEF++LCF FGIELDDVTTEKAIIRKEKHLDEE D
Sbjct: 1 MPTVSVGRDRLFAALGRTYTQEEFDELCFEFGIELDDVTTEKAIIRKEKHLDEEEDGGAD 60
Query: 59 -DEEVIYKIEVPANRYDLLCLEGIAQALRVFNKQQEIPKYTLSDVSKDSMLQMHVKPETS 117
DEEVIYKI+VPANRYDLLCLEG+A+ALRVF + IP Y L+++SK S+L+MHVKPETS
Sbjct: 61 DDEEVIYKIDVPANRYDLLCLEGLARALRVFLGTEPIPTYRLAEISKGSILKMHVKPETS 120
Query: 118 SIRPYVVCAVLRDISFDEASYNSFIDLQDKLHQNICRRRTLVAIGTHDLDTLQGPFTYEA 177
IRP+VVCAVLR ++FDEA YNSFIDLQDKLHQNICRRRTLVAIGTHDLDTLQGPFTYEA
Sbjct: 121 LIRPFVVCAVLRGVTFDEARYNSFIDLQDKLHQNICRRRTLVAIGTHDLDTLQGPFTYEA 180
Query: 178 LPPSHINFVPLKQTRDFTADELMEFYKSDLKLKKYLHIIENSPLYPVLYDQNRTVLSLPP 237
LPP INFVPLKQT+ F ADELMEFYKSD+KLKK+LHIIENSP++PV+YD NRTVLSLPP
Sbjct: 181 LPPEDINFVPLKQTKSFRADELMEFYKSDMKLKKFLHIIENSPVFPVIYDSNRTVLSLPP 240
Query: 238 IINGAHSAITLKTKNVFIECTATDLTKAKIVLNTMVTIFSEYCKRKYQVEPVEVVYADGR 297
IINGAHSAITL TKNVFIECTATDLTKAKIVLNTMVT+FSEYC RK++VEPVEVVY DG+
Sbjct: 241 IINGAHSAITLDTKNVFIECTATDLTKAKIVLNTMVTMFSEYCARKFEVEPVEVVYPDGK 300
Query: 298 SYVYPDLSAYNMEVSLSYINHTIGVSLEAEEVTSLLNRMQLHAERSASGNNQWNINVLVP 357
S VYPDLS MEV LSYIN +IGVSL+AEEV SLLN+MQL AE+ S ++ I V VP
Sbjct: 301 STVYPDLSVRTMEVDLSYINSSIGVSLDAEEVASLLNKMQLQAEQ--SSDDGCTIRVSVP 358
Query: 358 PTRSDVLHPCDVMEDVAIAYGYNNIPKRKPASV---KPLALNEFSDLMRLEIAMNGFTEV 414
PTRSD+LHPCDV EDVAIAYGYNNIPKRKP S+ K LN+FSDL+R E+AM GFTEV
Sbjct: 359 PTRSDILHPCDVAEDVAIAYGYNNIPKRKPKSMTVGKQQPLNQFSDLLRAEVAMAGFTEV 418
Query: 415 LTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPI 473
LTWILCS KE MLNR+ D ++AV +GNPR++DFEVVRT+L+PG+LKT+GHNKD PKPI
Sbjct: 419 LTWILCSHKENFAMLNREDDGNSAVIIGNPRSADFEVVRTSLLPGLLKTLGHNKDAPKPI 478
Query: 474 KIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFEVIY 513
K++EV DVVLLDE KDVGA RRLAALYCG SGFEVI+
Sbjct: 479 KLFEVSDVVLLDESKDVGARNSRRLAALYCGTTSGFEVIH 518
|
Length = 597 |
| >gnl|CDD|236592 PRK09616, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|232989 TIGR00471, pheT_arch, phenylalanyl-tRNA synthetase, beta subunit | Back alignment and domain information |
|---|
| >gnl|CDD|223150 COG0072, PheT, Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >gnl|CDD|234804 PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|214876 smart00873, B3_4, B3/4 domain | Back alignment and domain information |
|---|
| >gnl|CDD|232990 TIGR00472, pheT_bact, phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial | Back alignment and domain information |
|---|
| >gnl|CDD|238392 cd00769, PheRS_beta_core, Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain | Back alignment and domain information |
|---|
| >gnl|CDD|197942 smart00874, B5, tRNA synthetase B5 domain | Back alignment and domain information |
|---|
| >gnl|CDD|202662 pfam03483, B3_4, B3/4 domain | Back alignment and domain information |
|---|
| >gnl|CDD|202663 pfam03484, B5, tRNA synthetase B5 domain | Back alignment and domain information |
|---|
| >gnl|CDD|214391 CHL00192, syfB, phenylalanyl-tRNA synthetase beta chain; Provisional | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 528 | |||
| PLN02265 | 597 | probable phenylalanyl-tRNA synthetase beta chain | 100.0 | |
| KOG2472 | 578 | consensus Phenylalanyl-tRNA synthetase beta subuni | 100.0 | |
| TIGR00471 | 551 | pheT_arch phenylalanyl-tRNA synthetase, beta subun | 100.0 | |
| PRK09616 | 552 | pheT phenylalanyl-tRNA synthetase subunit beta; Re | 100.0 | |
| CHL00192 | 704 | syfB phenylalanyl-tRNA synthetase beta chain; Prov | 100.0 | |
| PRK00629 | 791 | pheT phenylalanyl-tRNA synthetase subunit beta; Re | 100.0 | |
| TIGR00472 | 798 | pheT_bact phenylalanyl-tRNA synthetase, beta subun | 100.0 | |
| COG0072 | 650 | PheT Phenylalanyl-tRNA synthetase beta subunit [Tr | 100.0 | |
| cd00769 | 198 | PheRS_beta_core Phenylalanyl-tRNA synthetase (PheR | 99.9 | |
| PF03483 | 174 | B3_4: B3/4 domain; InterPro: IPR005146 This entry | 99.86 | |
| PF03484 | 70 | B5: tRNA synthetase B5 domain; InterPro: IPR005147 | 99.82 | |
| TIGR02367 | 453 | PylS pyrrolysyl-tRNA synthetase. PylS is the archa | 99.82 | |
| cd00496 | 218 | PheRS_alpha_core Phenylalanyl-tRNA synthetase (Phe | 99.81 | |
| smart00874 | 71 | B5 tRNA synthetase B5 domain. This domain is found | 99.8 | |
| TIGR00468 | 294 | pheS phenylalanyl-tRNA synthetase, alpha subunit. | 99.68 | |
| PF01409 | 247 | tRNA-synt_2d: tRNA synthetases class II core domai | 99.63 | |
| smart00873 | 174 | B3_4 B3/4 domain. This domain is found in tRNA syn | 99.63 | |
| PRK09537 | 417 | pylS pyrolysyl-tRNA synthetase; Reviewed | 99.46 | |
| cd00768 | 211 | class_II_aaRS-like_core Class II tRNA amino-acyl s | 99.45 | |
| COG0072 | 650 | PheT Phenylalanyl-tRNA synthetase beta subunit [Tr | 99.41 | |
| PRK00488 | 339 | pheS phenylalanyl-tRNA synthetase subunit alpha; V | 99.4 | |
| PRK06253 | 529 | O-phosphoseryl-tRNA synthetase; Reviewed | 99.04 | |
| TIGR00470 | 533 | sepS O-phosphoseryl-tRNA(Cys) synthetase. This fam | 98.85 | |
| PRK04172 | 489 | pheS phenylalanyl-tRNA synthetase subunit alpha; P | 98.79 | |
| COG3382 | 229 | Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe- | 98.68 | |
| smart00874 | 71 | B5 tRNA synthetase B5 domain. This domain is found | 98.46 | |
| PTZ00326 | 494 | phenylalanyl-tRNA synthetase alpha chain; Provisio | 98.13 | |
| COG0016 | 335 | PheS Phenylalanyl-tRNA synthetase alpha subunit [T | 98.01 | |
| PLN02853 | 492 | Probable phenylalanyl-tRNA synthetase alpha chain | 98.0 | |
| PF03484 | 70 | B5: tRNA synthetase B5 domain; InterPro: IPR005147 | 97.83 | |
| PF00587 | 173 | tRNA-synt_2b: tRNA synthetase class II core domain | 96.83 | |
| PRK00037 | 412 | hisS histidyl-tRNA synthetase; Reviewed | 96.77 | |
| cd00773 | 261 | HisRS-like_core Class II Histidinyl-tRNA synthetas | 96.7 | |
| PRK12421 | 392 | ATP phosphoribosyltransferase regulatory subunit; | 96.48 | |
| PF13393 | 311 | tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI | 96.38 | |
| TIGR00442 | 397 | hisS histidyl-tRNA synthetase. This model finds a | 96.35 | |
| PLN02530 | 487 | histidine-tRNA ligase | 96.09 | |
| CHL00201 | 430 | syh histidine-tRNA synthetase; Provisional | 96.07 | |
| PRK12420 | 423 | histidyl-tRNA synthetase; Provisional | 95.97 | |
| cd00670 | 235 | Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_t | 95.73 | |
| PLN02788 | 402 | phenylalanine-tRNA synthetase | 95.54 | |
| PRK12292 | 391 | hisZ ATP phosphoribosyltransferase regulatory subu | 95.4 | |
| TIGR00443 | 314 | hisZ_biosyn_reg ATP phosphoribosyltransferase, reg | 95.13 | |
| TIGR00471 | 551 | pheT_arch phenylalanyl-tRNA synthetase, beta subun | 94.96 | |
| PRK09616 | 552 | pheT phenylalanyl-tRNA synthetase subunit beta; Re | 94.44 | |
| PRK00629 | 791 | pheT phenylalanyl-tRNA synthetase subunit beta; Re | 94.22 | |
| PRK12293 | 281 | hisZ ATP phosphoribosyltransferase regulatory subu | 94.09 | |
| PRK12295 | 373 | hisZ ATP phosphoribosyltransferase regulatory subu | 93.83 | |
| TIGR00409 | 568 | proS_fam_II prolyl-tRNA synthetase, family II. Pro | 93.73 | |
| PRK09194 | 565 | prolyl-tRNA synthetase; Provisional | 93.71 | |
| PLN02265 | 597 | probable phenylalanyl-tRNA synthetase beta chain | 93.69 | |
| PLN02972 | 763 | Histidyl-tRNA synthetase | 93.07 | |
| TIGR00472 | 798 | pheT_bact phenylalanyl-tRNA synthetase, beta subun | 93.04 | |
| PRK12305 | 575 | thrS threonyl-tRNA synthetase; Reviewed | 93.0 | |
| KOG2784 | 483 | consensus Phenylalanyl-tRNA synthetase, beta subun | 92.99 | |
| cd00771 | 298 | ThrRS_core Threonyl-tRNA synthetase (ThrRS) class | 92.85 | |
| PLN02908 | 686 | threonyl-tRNA synthetase | 92.81 | |
| PRK00413 | 638 | thrS threonyl-tRNA synthetase; Reviewed | 92.33 | |
| CHL00192 | 704 | syfB phenylalanyl-tRNA synthetase beta chain; Prov | 92.3 | |
| TIGR00418 | 563 | thrS threonyl-tRNA synthetase. This model represen | 92.24 | |
| COG2024 | 536 | Phenylalanyl-tRNA synthetase alpha subunit (archae | 92.21 | |
| PRK14799 | 545 | thrS threonyl-tRNA synthetase; Provisional | 92.17 | |
| cd00772 | 264 | ProRS_core Prolyl-tRNA synthetase (ProRS) class II | 91.96 | |
| PRK12444 | 639 | threonyl-tRNA synthetase; Reviewed | 91.9 | |
| cd00779 | 255 | ProRS_core_prok Prolyl-tRNA synthetase (ProRS) cla | 91.24 | |
| smart00873 | 174 | B3_4 B3/4 domain. This domain is found in tRNA syn | 90.18 | |
| COG0124 | 429 | HisS Histidyl-tRNA synthetase [Translation, riboso | 89.82 | |
| cd00770 | 297 | SerRS_core Seryl-tRNA synthetase (SerRS) class II | 89.29 | |
| PRK12325 | 439 | prolyl-tRNA synthetase; Provisional | 89.12 | |
| cd00669 | 269 | Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase cl | 88.07 | |
| PF11734 | 74 | TilS_C: TilS substrate C-terminal domain; InterPro | 86.17 | |
| cd00774 | 254 | GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-lik | 83.01 | |
| cd00778 | 261 | ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) | 82.33 | |
| PRK12294 | 272 | hisZ ATP phosphoribosyltransferase regulatory subu | 81.02 |
| >PLN02265 probable phenylalanyl-tRNA synthetase beta chain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-122 Score=1018.13 Aligned_cols=518 Identities=78% Similarity=1.222 Sum_probs=469.2
Q ss_pred CCeEEecHHHHHHHhCCCCCHHHHHHHhhhcCCcccccchhHHHHhhhccccc---cCCCCCCceEEEEecCCCcccccc
Q 009703 1 MPTVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDE---EGDENDEEVIYKIEVPANRYDLLC 77 (528)
Q Consensus 1 Mp~i~~~~~~l~~~~g~~~~~~el~~~l~~~g~e~e~~~~~~~~~~~~~~~~~---~~~~~~~d~i~~ieit~NR~Dlls 77 (528)
||||+|++++|++++|+++|++||+++||+||+|+|++++|+++.++|+|.++ ++.++++|.+++||+|||||||||
T Consensus 1 MP~i~~~~~~l~~~~g~~~~~~~~~~~~~~~g~e~d~~~~e~~~~~~~~~~~~~~~~~~~~~~d~i~eieitpNR~Dlls 80 (597)
T PLN02265 1 MPTVSVGRDRLFAALGRTYTQEEFDELCFEFGIELDDVTTEKAIIRKEKHLDEEEDGGADDDEEVIYKIDVPANRYDLLC 80 (597)
T ss_pred CCEEEEcHHHHHHHhCCCCCHHHHHHHHHHhCceeccccccccccccccccccccccccccCCceEEEEEeCCCcHHHhh
Confidence 99999999999999999999999999999999999999877777778888764 235678999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCCcccccCCCCCCcceEEEeccCCCCCCeEEEEEEEccccCCCCCCCHHHHHHHHHhcCCCCCc
Q 009703 78 LEGIAQALRVFNKQQEIPKYTLSDVSKDSMLQMHVKPETSSIRPYVVCAVLRDISFDEASYNSFIDLQDKLHQNICRRRT 157 (528)
Q Consensus 78 ~~GiARel~~~~~~~~~p~~~~~~~~~~~~~~i~V~~~~~~~rp~~~~~vi~~v~~~~~~~~s~~~lQekL~~~~~r~r~ 157 (528)
++||||+|++++|....|.|.+.........++.|+.++.+.||||+|++++||++++++|+||+|||+|||+++||+|+
T Consensus 81 ~~GiARel~a~~g~~~~p~~~~~~~~~~~~~~v~V~~~~~~~rp~~~~~vi~~v~~~~~~~~Sp~~lQerL~~~g~R~r~ 160 (597)
T PLN02265 81 LEGLARALRVFLGTEPIPTYRLAEISKGSILKMHVKPETSLIRPFVVCAVLRGVTFDEARYNSFIDLQDKLHQNICRRRT 160 (597)
T ss_pred HHHHHHHHHHHhCCCCCCccccccCCCCcceEEEEcccccccCceEEEEEEeCcccCccccCCHHHHHHHHHHhcCCcce
Confidence 99999999999997447777653221112356777656678999999999999999999999999999999999999988
Q ss_pred EeehhhhhhhccCCCeEEEecCCCceEEEeCCCcccCChHHHHHhhcccccccceeecccCCCcceEEEeCCCCeeecCC
Q 009703 158 LVAIGTHDLDTLQGPFTYEALPPSHINFVPLKQTRDFTADELMEFYKSDLKLKKYLHIIENSPLYPVLYDQNRTVLSLPP 237 (528)
Q Consensus 158 ~VdIgn~Dldki~~p~~y~~~~~~~i~f~~L~~~~~~~~~el~~l~~~~~~l~~y~~ii~~~~~~pVI~D~~g~vlslag 237 (528)
+|||||||+|+|++||.|+++++++++|+||+++++|+++||++.+.++++|++|+|||++.+.||||+|++|.|+||||
T Consensus 161 ~VdIgn~DldkI~g~i~yr~~~~~~~~f~~Ld~~~e~~~~eil~~~~~~~~L~~Y~~ii~~~~~~~vI~D~~~~vlslag 240 (597)
T PLN02265 161 LVAIGTHDLDTLQGPFTYEALPPEDINFVPLKQTKSFRADELMEFYKSDMKLKKFLHIIENSPVFPVIYDSNRTVLSLPP 240 (597)
T ss_pred EEEEeeccHHHcCCCeEEEEcCCCceEEEECCCCCccCHHHHhhhcccCcccccccccccCCCCceEEEeCCCCEEEeCC
Confidence 99999999999999999999998778999999999999999999999999999999999999999999999987799999
Q ss_pred cccCCceeeecCCceEEEEecccChHhHHHHHHHHHHHHHHHhcCCcceecEEEEeeCCceeeecCCcceeEEeeHHHHH
Q 009703 238 IINGAHSAITLKTKNVFIECTATDLTKAKIVLNTMVTIFSEYCKRKYQVEPVEVVYADGRSYVYPDLSAYNMEVSLSYIN 317 (528)
Q Consensus 238 Iigg~~s~It~~T~nI~iE~ag~D~~~~~~al~~~~~~l~~~~~~~~~i~~v~v~~~~g~~~~~p~~~~~~i~~~~~~i~ 317 (528)
||||++|+||++|||||||||++|++++..||++++++|+++|+++|++++|.+++..|....+|.+.++.+.++.++|+
T Consensus 241 Iing~~S~It~~TknIfIE~a~~D~~~~~~al~~~~~ll~e~~~~~~~i~~v~v~~~~~~~~~~p~~~~~~i~~~~~~i~ 320 (597)
T PLN02265 241 IINGAHSAITLDTKNVFIECTATDLTKAKIVLNTMVTMFSEYCARKFEVEPVEVVYPDGKSTVYPDLSVRTMEVDLSYIN 320 (597)
T ss_pred eeCCCccEecCCCcEEEEEEeccCHHHHHHHHHHHHHHHHHhcCCCceEEEEEEEccCCceEeccCCcCceEEeeHHHHH
Confidence 99999999999999999999999999999999999999999999988899988887656667789888899999999999
Q ss_pred hhcCCCCCHHHHHHHHHhcCCeEEEcC-CCCCcceEEEecCCCccccCCcchhhhhhhhhhCCCCCCCCCCCCC---CCC
Q 009703 318 HTIGVSLEAEEVTSLLNRMQLHAERSA-SGNNQWNINVLVPPTRSDVLHPCDVMEDVAIAYGYNNIPKRKPASV---KPL 393 (528)
Q Consensus 318 ~~LG~~l~~~~i~~~L~~lg~~~~~~~-~~~~~~~~~V~vP~~R~DI~~~~DliEEIar~yGydni~~~~p~~~---~~~ 393 (528)
++||++|+.++|+++|++|||.+...+ ++ +. |.|+||+||.||+|+|||||||||+|||||||+++|... ..+
T Consensus 321 ~~lG~~l~~~ei~~iL~~l~~~~~~~~~~~-~~--~~V~vP~~R~DI~~~~DiiEEVar~yGydni~~~~P~~~~~g~~~ 397 (597)
T PLN02265 321 SSIGVSLDAEEVASLLNKMQLQAEQSSDDG-CT--IRVSVPPTRSDILHPCDVAEDVAIAYGYNNIPKRKPKSMTVGKQQ 397 (597)
T ss_pred HHhCCCCCHHHHHHHHHHCCCCeEecccCC-Cc--eEEEcCCccccccchhhhhhhhHheeccccCCccCCCcccCCCCC
Confidence 999999999999999999999986521 11 35 999999999999999999999999999999999998643 678
Q ss_pred hhHHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCCCCcce-eeCCcccchhHHHhhhHHHHHHHHHHccCCCCC
Q 009703 394 ALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKP 472 (528)
Q Consensus 394 ~~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~~~~~v-l~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~~ 472 (528)
+.+++.+++|+.|+++||+|++||+|+|+++++.+|+...++..+| |+||+|+|+++||+|||||||+++++|+|+++|
T Consensus 398 ~~~~~~~~iR~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v~I~NP~s~e~~vlRtSLlPgLL~~l~~N~~~~~p 477 (597)
T PLN02265 398 PLNQFSDLLRAEVAMAGFTEVLTWILCSHKENFAMLNREDDGNSAVIIGNPRSADFEVVRTSLLPGLLKTLGHNKDAPKP 477 (597)
T ss_pred HHHHHHHHHHHHHHHCCceeeeceeeCChHHHHHhhcCCccCCceEEECCCcchhHHHHHHhhHHHHHHHHHHhhcCCCC
Confidence 8899999999999999999999999999988777776543222579 999999999999999999999999999999999
Q ss_pred ccEEEeeeeeecCCCcccCcccccEEEEEEecCCCCHHHHHHHHHh----cCC
Q 009703 473 IKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFEVIYLTVLT----KNF 521 (528)
Q Consensus 473 ~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~~~~~~f~~i~~~l~~----~~~ 521 (528)
+|+||||+||+++.+.+.+++|.++||++++|+.++|+++||+|++ +|+
T Consensus 478 ~klFEiG~V~~~~~~~~~~~~e~~~la~~~~g~~~~f~~ikg~le~ll~~l~i 530 (597)
T PLN02265 478 IKLFEVSDVVLLDESKDVGARNSRRLAALYCGTTSGFEVIHGLVDRIMEVLGI 530 (597)
T ss_pred eeEEEeEeEEecCCcccCCcchhhEEEEEEECCCCCHhhHHHHHHHHHHHcCC
Confidence 9999999999887654566689999999999999999999999984 566
|
|
| >KOG2472 consensus Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >TIGR00471 pheT_arch phenylalanyl-tRNA synthetase, beta subunit | Back alignment and domain information |
|---|
| >PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed | Back alignment and domain information |
|---|
| >CHL00192 syfB phenylalanyl-tRNA synthetase beta chain; Provisional | Back alignment and domain information |
|---|
| >PRK00629 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed | Back alignment and domain information |
|---|
| >TIGR00472 pheT_bact phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial | Back alignment and domain information |
|---|
| >COG0072 PheT Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >cd00769 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain | Back alignment and domain information |
|---|
| >PF03483 B3_4: B3/4 domain; InterPro: IPR005146 This entry represents the B3/B4 domain found in tRNA synthetase beta subunits as well as in some non-tRNA synthetase proteins | Back alignment and domain information |
|---|
| >PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits | Back alignment and domain information |
|---|
| >TIGR02367 PylS pyrrolysyl-tRNA synthetase | Back alignment and domain information |
|---|
| >cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain | Back alignment and domain information |
|---|
| >smart00874 B5 tRNA synthetase B5 domain | Back alignment and domain information |
|---|
| >TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit | Back alignment and domain information |
|---|
| >PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
| >smart00873 B3_4 B3/4 domain | Back alignment and domain information |
|---|
| >PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
| >cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain | Back alignment and domain information |
|---|
| >COG0072 PheT Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated | Back alignment and domain information |
|---|
| >PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
| >TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase | Back alignment and domain information |
|---|
| >PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional | Back alignment and domain information |
|---|
| >COG3382 Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta [General function prediction only] | Back alignment and domain information |
|---|
| >smart00874 B5 tRNA synthetase B5 domain | Back alignment and domain information |
|---|
| >PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional | Back alignment and domain information |
|---|
| >COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain | Back alignment and domain information |
|---|
| >PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits | Back alignment and domain information |
|---|
| >PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes | Back alignment and domain information |
|---|
| >PRK00037 hisS histidyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
| >cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain | Back alignment and domain information |
|---|
| >PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
| >PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A | Back alignment and domain information |
|---|
| >TIGR00442 hisS histidyl-tRNA synthetase | Back alignment and domain information |
|---|
| >PLN02530 histidine-tRNA ligase | Back alignment and domain information |
|---|
| >CHL00201 syh histidine-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
| >PRK12420 histidyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
| >cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain | Back alignment and domain information |
|---|
| >PLN02788 phenylalanine-tRNA synthetase | Back alignment and domain information |
|---|
| >PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
| >TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit | Back alignment and domain information |
|---|
| >TIGR00471 pheT_arch phenylalanyl-tRNA synthetase, beta subunit | Back alignment and domain information |
|---|
| >PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed | Back alignment and domain information |
|---|
| >PRK00629 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed | Back alignment and domain information |
|---|
| >PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
| >PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
| >TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II | Back alignment and domain information |
|---|
| >PRK09194 prolyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
| >PLN02265 probable phenylalanyl-tRNA synthetase beta chain | Back alignment and domain information |
|---|
| >PLN02972 Histidyl-tRNA synthetase | Back alignment and domain information |
|---|
| >TIGR00472 pheT_bact phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial | Back alignment and domain information |
|---|
| >PRK12305 thrS threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
| >KOG2784 consensus Phenylalanyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain | Back alignment and domain information |
|---|
| >PLN02908 threonyl-tRNA synthetase | Back alignment and domain information |
|---|
| >PRK00413 thrS threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
| >CHL00192 syfB phenylalanyl-tRNA synthetase beta chain; Provisional | Back alignment and domain information |
|---|
| >TIGR00418 thrS threonyl-tRNA synthetase | Back alignment and domain information |
|---|
| >COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PRK14799 thrS threonyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
| >cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain | Back alignment and domain information |
|---|
| >PRK12444 threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
| >cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain | Back alignment and domain information |
|---|
| >smart00873 B3_4 B3/4 domain | Back alignment and domain information |
|---|
| >COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain | Back alignment and domain information |
|---|
| >PRK12325 prolyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
| >cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain | Back alignment and domain information |
|---|
| >PF11734 TilS_C: TilS substrate C-terminal domain; InterPro: IPR012796 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
| >cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain | Back alignment and domain information |
|---|
| >cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain | Back alignment and domain information |
|---|
| >PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 528 | ||||
| 3l4g_B | 589 | Crystal Structure Of Homo Sapiens Cytoplasmic Pheny | 1e-154 | ||
| 2cxi_A | 348 | Crystal Structure Of An N-Terminal Fragment Of The | 2e-43 | ||
| 3pco_B | 795 | Crystal Structure Of E. Coli Phenylalanine-Trna Syn | 2e-10 | ||
| 2rhs_B | 800 | Phers From Staphylococcus Haemolyticus- Rational Pr | 8e-07 | ||
| 2rhq_B | 795 | Phers From Staphylococcus Haemolyticus- Rational Pr | 9e-07 |
| >pdb|3L4G|B Chain B, Crystal Structure Of Homo Sapiens Cytoplasmic Phenylalanyl-T Synthetase Length = 589 | Back alignment and structure |
|
| >pdb|2CXI|A Chain A, Crystal Structure Of An N-Terminal Fragment Of The Phenylalanyl-Trna Synthetase Beta-Subunit From Pyrococcus Horikoshii Length = 348 | Back alignment and structure |
| >pdb|3PCO|B Chain B, Crystal Structure Of E. Coli Phenylalanine-Trna Synthetase Complexed With Phenylalanine And Amp Length = 795 | Back alignment and structure |
| >pdb|2RHS|B Chain B, Phers From Staphylococcus Haemolyticus- Rational Protein Engineering And Inhibitor Studies Length = 800 | Back alignment and structure |
| >pdb|2RHQ|B Chain B, Phers From Staphylococcus Haemolyticus- Rational Protein Engineering And Inhibitor Studies Length = 795 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} Length = 589 | Back alignment and structure |
|---|
Score = 586 bits (1512), Expect = 0.0
Identities = 265/516 (51%), Positives = 359/516 (69%), Gaps = 9/516 (1%)
Query: 1 MPTVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDE 60
MPTVSV RD LF ALG++YT EEF++LCF FG+ELD++T+EK II KE+ + +D
Sbjct: 1 MPTVSVKRDLLFQALGRTYTDEEFDELCFEFGLELDEITSEKEIISKEQGNVKAAGASDV 60
Query: 61 EVIYKIEVPANRYDLLCLEGIAQALRVFNKQQEIPKYTLSDVSKDSMLQMHVKPETSSIR 120
V+YKI+VPANRYDLLCLEG+ + L+VF ++ + P Y + + ++ + ET+ IR
Sbjct: 61 -VLYKIDVPANRYDLLCLEGLVRGLQVFKERIKAPVYKRV-MPDGKIQKLIITEETAKIR 118
Query: 121 PYVVCAVLRDISFDEASYNSFIDLQDKLHQNICRRRTLVAIGTHDLDTLQGPFTYEALPP 180
P+ V AVLR+I F + Y+SFI+LQ+KLHQNICR+R LVAIGTHDLDTL GPFTY A P
Sbjct: 119 PFAVAAVLRNIKFTKDRYDSFIELQEKLHQNICRKRALVAIGTHDLDTLSGPFTYTAKRP 178
Query: 181 SHINFVPLKQTRDFTADELMEFYKSDLKLKKYLHIIENSPLYPVLYDQNRTVLSLPPIIN 240
S I F PL +T+++TA ELM YK+D LK YLHIIEN PLYPV+YD N VLS+PPIIN
Sbjct: 179 SDIKFKPLNKTKEYTACELMNIYKTDNHLKHYLHIIENKPLYPVIYDSNGVVLSMPPIIN 238
Query: 241 GAHSAITLKTKNVFIECTATDLTKAKIVLNTMVTIFSEYCKRKYQVEPVEVVYADGRSYV 300
G HS IT+ T+N+FIECT TD TKAKIVL+ +VT+FSEYC+ ++ VE EVV+ +G+S+
Sbjct: 239 GDHSRITVNTRNIFIECTGTDFTKAKIVLDIIVTMFSEYCENQFTVEAAEVVFPNGKSHT 298
Query: 301 YPDLSAYNMEVSLSYINHTIGVSLEAEEVTSLLNRMQLHAERSASGNNQWNINVLVPPTR 360
+P+L+ V IN +G+ E + LL RM L +E G I + +PPTR
Sbjct: 299 FPELAYRKEMVRADLINKKVGIRETPENLAKLLTRMYLKSEVIGDG---NQIEIEIPPTR 355
Query: 361 SDVLHPCDVMEDVAIAYGYNNIPKRKPASV---KPLALNEFSDLMRLEIAMNGFTEVLTW 417
+D++H CD++ED AIAYGYNNI P + LN+ ++L+R ++A GFTE LT+
Sbjct: 356 ADIIHACDIVEDAAIAYGYNNIQMTLPKTYTIANQFPLNKLTELLRHDMAAAGFTEALTF 415
Query: 418 ILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIKIY 476
LCS ++I+ L + AV + NP+T++F+V RTTL+PG+LKTI N+ P P+K++
Sbjct: 416 ALCSQEDIADKLGVDISATKAVHISNPKTAEFQVARTTLLPGLLKTIAANRKMPLPLKLF 475
Query: 477 EVGDVVLLDEKKDVGASCRRRLAALYCGANSGFEVI 512
E+ D+V+ D DVGA R L A+Y N GFE+I
Sbjct: 476 EISDIVIKDSNTDVGAKNYRHLCAVYYNKNPGFEII 511
|
| >2cxi_A Phenylalanyl-tRNA synthetase beta chain; aminoacyl-tRNA synthetase, ligase, structural genomics; HET: MSE; 1.94A {Pyrococcus horikoshii} Length = 348 | Back alignment and structure |
|---|
| >3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli} Length = 795 | Back alignment and structure |
|---|
| >2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B* Length = 795 | Back alignment and structure |
|---|
| >1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B* Length = 785 | Back alignment and structure |
|---|
| >3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis} Length = 213 | Back alignment and structure |
|---|
| >3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis} Length = 213 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 528 | |||
| 3l4g_B | 589 | Phenylalanyl-tRNA synthetase beta chain; aminoacyl | 100.0 | |
| 3pco_B | 795 | Phenylalanyl-tRNA synthetase, beta chain; aminoacy | 100.0 | |
| 2rhq_B | 795 | Phenylalanyl-tRNA synthetase beta chain; heterotet | 100.0 | |
| 1b7y_B | 785 | Phers, protein (phenylalanyl-tRNA synthetase); enz | 100.0 | |
| 2cxi_A | 348 | Phenylalanyl-tRNA synthetase beta chain; aminoacyl | 100.0 | |
| 2du3_A | 534 | O-phosphoseryl-tRNA synthetase; alpha4 tetramer, l | 99.93 | |
| 3ica_A | 213 | Phenylalanyl-tRNA synthetase beta chain; APC61692. | 99.92 | |
| 3ig2_A | 213 | Phenylalanyl-tRNA synthetase beta chain; phers, MC | 99.92 | |
| 2rhq_A | 294 | Phenylalanyl-tRNA synthetase alpha chain; heterote | 99.9 | |
| 2du7_A | 549 | O-phosphoseryl-tRNA synthetase; alpha4 tetramer, l | 99.66 | |
| 2odr_D | 685 | Phosphoseryl-tRNA synthetase; phosphoserine tRNA s | 99.61 | |
| 2odr_B | 648 | Phosphoseryl-tRNA synthetase; phosphoserine tRNA s | 99.61 | |
| 2odr_A | 665 | Phosphoseryl-tRNA synthetase; phosphoserine tRNA s | 99.61 | |
| 2odr_C | 701 | Phosphoseryl-tRNA synthetase; phosphoserine tRNA s | 99.61 | |
| 3l4g_A | 508 | Phenylalanyl-tRNA synthetase alpha chain; aminoacy | 99.61 | |
| 1b7y_A | 350 | Phers, protein (phenylalanyl-tRNA synthetase); enz | 99.6 | |
| 3pco_A | 327 | Phenylalanyl-tRNA synthetase, alpha subunit; amino | 99.49 | |
| 3qtc_A | 290 | Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthet | 99.48 | |
| 3dsq_A | 288 | Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-t | 99.45 | |
| 3cmq_A | 415 | Phenylalanyl-tRNA synthetase, mitochondrial; class | 99.06 | |
| 3hj7_A | 142 | TRNA(Ile)-lysidine synthase; helix-turn-helix, pse | 97.75 | |
| 1z7m_A | 344 | ATP phosphoribosyltransferase regulatory subunit; | 96.64 | |
| 3net_A | 465 | Histidyl-tRNA synthetase; aminoacyl-tRNA synthetas | 96.53 | |
| 3od1_A | 400 | ATP phosphoribosyltransferase regulatory subunit; | 96.35 | |
| 1wu7_A | 434 | Histidyl-tRNA synthetase; ligase, structural genom | 96.27 | |
| 1h4v_B | 421 | Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA | 96.2 | |
| 3rac_A | 373 | Histidine-tRNA ligase; structural genomics, PSI-bi | 96.2 | |
| 2cxi_A | 348 | Phenylalanyl-tRNA synthetase beta chain; aminoacyl | 95.84 | |
| 1htt_A | 423 | Histidyl-tRNA synthetase; complex (tRNA synthetase | 95.74 | |
| 4e51_A | 467 | Histidine--tRNA ligase; seattle structural genomic | 95.73 | |
| 3lc0_A | 456 | Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-t | 95.53 | |
| 1qe0_A | 420 | Histidyl-tRNA synthetase; class II tRNA synthetase | 95.31 | |
| 1nyr_A | 645 | Threonyl-tRNA synthetase 1; ATP, threonine, ligase | 95.1 | |
| 4g84_A | 464 | Histidine--tRNA ligase, cytoplasmic; synthetase; 2 | 94.71 | |
| 2i4l_A | 458 | Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseud | 94.52 | |
| 4g85_A | 517 | Histidine-tRNA ligase, cytoplasmic; synthetase; 3. | 94.51 | |
| 3l4g_B | 589 | Phenylalanyl-tRNA synthetase beta chain; aminoacyl | 94.37 | |
| 2rhq_B | 795 | Phenylalanyl-tRNA synthetase beta chain; heterotet | 94.06 | |
| 3pco_B | 795 | Phenylalanyl-tRNA synthetase, beta chain; aminoacy | 94.04 | |
| 1b7y_B | 785 | Phers, protein (phenylalanyl-tRNA synthetase); enz | 93.78 | |
| 3a2k_A | 464 | TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, | 93.31 | |
| 3a32_A | 471 | Probable threonyl-tRNA synthetase 1; aeropyrum per | 93.27 | |
| 2j3l_A | 572 | Prolyl-tRNA synthetase; class II aminoacyl- T synt | 92.89 | |
| 1evl_A | 401 | Threonyl-tRNA synthetase; amino acid recognition, | 92.78 | |
| 1nj8_A | 459 | Proline-tRNA synthetase, proline--tRNA ligase; cla | 90.9 | |
| 1qf6_A | 642 | THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, m | 90.17 | |
| 2dq3_A | 425 | Seryl-tRNA synthetase; coiled-coil, homodimer, str | 88.94 | |
| 3uh0_A | 460 | Threonyl-tRNA synthetase, mitochondrial; threonine | 88.52 | |
| 1ses_A | 421 | Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A | 87.75 | |
| 1hc7_A | 477 | Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, | 87.09 | |
| 2dq0_A | 455 | Seryl-tRNA synthetase; coiled-coil, homodimer, str | 86.43 | |
| 1usy_A | 275 | ATP phosphoribosyltransferase regulatory subunit; | 86.03 | |
| 3err_A | 536 | Fusion protein of microtubule binding domain from | 83.78 | |
| 1nnh_A | 294 | Asparaginyl-tRNA synthetase-related peptide; struc | 83.54 | |
| 1nj1_A | 501 | PROR, proline-tRNA synthetase, proline--tRNA ligas | 81.24 | |
| 1wle_A | 501 | Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bo | 80.59 |
| >3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-121 Score=1009.88 Aligned_cols=517 Identities=51% Similarity=0.900 Sum_probs=474.2
Q ss_pred CCeEEecHHHHHHHhCCCCCHHHHHHHhhhcCCcccccchhHHHHhhhccccccCCCCCCceEEEEecCCCccccccHHH
Q 009703 1 MPTVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDEEVIYKIEVPANRYDLLCLEG 80 (528)
Q Consensus 1 Mp~i~~~~~~l~~~~g~~~~~~el~~~l~~~g~e~e~~~~~~~~~~~~~~~~~~~~~~~~d~i~~ieit~NR~Dlls~~G 80 (528)
||||+|++++|++++|+++|++||+++||+||+|+|++++|++++.+|+|.+++ .+.++|.+++|++|||||||||++|
T Consensus 1 Mp~i~v~~~~l~~~~g~~~~~~e~~~~~~~~g~e~d~~~~~~~~~~~~~~~~~~-~~~~~d~i~ei~itpNR~D~ls~~G 79 (589)
T 3l4g_B 1 MPTVSVKRDLLFQALGRTYTDEEFDELCFEFGLELDEITSEKEIISKEQGNVKA-AGASDVVLYKIDVPANRYDLLCLEG 79 (589)
T ss_dssp CCEEEEEHHHHHHHHTSCCCTTHHHHHHHHTTCEEEEEEEHHHHHTTTSSCCCC-CSSSSSEEEEEECCTTCSTTSSHHH
T ss_pred CCEEEECHHHHHHHHCCCCCHHHHHHHHHhcCCccccccccchhhhhccccccc-ccCCCCeEEEEecCCChhHHhHHHH
Confidence 999999999999999999999999999999999999999999999999988665 5678999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCcccccCCCCCCcceEEEeccCCCCCCeEEEEEEEccccCCCCCCCHHHHHHHHHhcCCCCCcEee
Q 009703 81 IAQALRVFNKQQEIPKYTLSDVSKDSMLQMHVKPETSSIRPYVVCAVLRDISFDEASYNSFIDLQDKLHQNICRRRTLVA 160 (528)
Q Consensus 81 iARel~~~~~~~~~p~~~~~~~~~~~~~~i~V~~~~~~~rp~~~~~vi~~v~~~~~~~~s~~~lQekL~~~~~r~r~~Vd 160 (528)
||||+|+++|..+.|.+...... .....+.|+.++++.||||+|++|+||++++++++||+|||+|||++++|+|++||
T Consensus 80 iARela~~~~~~~~p~~~~~~~~-~~~~~i~v~~~~~~~cp~y~~~vi~~V~~~~~~~~Sp~wlq~rL~~~~~r~~~~Vd 158 (589)
T 3l4g_B 80 LVRGLQVFKERIKAPVYKRVMPD-GKIQKLIITEETAKIRPFAVAAVLRNIKFTKDRYDSFIELQEKLHQNICRKRALVA 158 (589)
T ss_dssp HHHHHHHHTTSSCCCCCEEECCS-SCCCEEEECTTTTTTSCEEEEEEECCBCCCHHHHHHHHHHHHHTTTTTTTTTTSEE
T ss_pred HHHHHHHhcCCCCCCCccccCCC-CCceeEEEeecCcccCCeEEEEEEECcCcCccccCCHHHHHHHHHHccCCCceEEe
Confidence 99999999886688888765432 12456888888889999999999999999988888999999999999999999999
Q ss_pred hhhhhhhccCCCeEEEecCCCceEEEeCCCcccCChHHHHHhhcccccccceeecccCCCcceEEEeCCCCeeecCCccc
Q 009703 161 IGTHDLDTLQGPFTYEALPPSHINFVPLKQTRDFTADELMEFYKSDLKLKKYLHIIENSPLYPVLYDQNRTVLSLPPIIN 240 (528)
Q Consensus 161 Ign~Dldki~~p~~y~~~~~~~i~f~~L~~~~~~~~~el~~l~~~~~~l~~y~~ii~~~~~~pVI~D~~g~vlslagIig 240 (528)
|||||+|+|++||+|++.++++++|+||+++++++..++++++.+|.+|++|+||+++++.||||+|++|.++|||||||
T Consensus 159 Itn~Dldki~g~~~~~~~~~~~~~f~~Ld~~~~l~~~~l~~~~~~~~~~~~y~~ii~~~~~~~vI~D~~~~vlslaGImg 238 (589)
T 3l4g_B 159 IGTHDLDTLSGPFTYTAKRPSDIKFKPLNKTKEYTACELMNIYKTDNHLKHYLHIIENKPLYPVIYDSNGVVLSMPPIIN 238 (589)
T ss_dssp EEEEEGGGCCSCEEEEEECSTTCEECBTTCSSCEEHHHHHHHSTTCTTTTTTTTTTCCSSCEEEEECTTCCCCEETTTEE
T ss_pred hhhhhHHHcCCCeEEEEeCCCCcEEEECCCceEecHHHhhhhhcccccccccceecccCCCcEEEEECCCCEEEECCccC
Confidence 99999999999999999998889999999988999999999999999999999999999999999999986689999999
Q ss_pred CCceeeecCCceEEEEecccChHhHHHHHHHHHHHHHHHhcCCcceecEEEEeeCCceeeecCCcceeEEeeHHHHHhhc
Q 009703 241 GAHSAITLKTKNVFIECTATDLTKAKIVLNTMVTIFSEYCKRKYQVEPVEVVYADGRSYVYPDLSAYNMEVSLSYINHTI 320 (528)
Q Consensus 241 g~~s~It~~T~nI~iE~ag~D~~~~~~al~~~~~~l~~~~~~~~~i~~v~v~~~~g~~~~~p~~~~~~i~~~~~~i~~~L 320 (528)
|++|+||++||||||||||+|++.+..|+++++++++++|+++++++++++++..|....+|.+.++++.++.++|+++|
T Consensus 239 G~~S~Vt~~T~~V~lE~Ag~D~~~~~~al~~a~~li~e~~gg~~~~e~~~v~~~~g~~~~~p~~~~~~i~l~~~~i~~ll 318 (589)
T 3l4g_B 239 GDHSRITVNTRNIFIECTGTDFTKAKIVLDIIVTMFSEYCENQFTVEAAEVVFPNGKSHTFPELAYRKEMVRADLINKKV 318 (589)
T ss_dssp BSTTCCCTTCCCEEEEEEESCHHHHHHHHHHHHHHHGGGBTTSSEEECEEEECTTSCEEEECCCCCEEEEEEHHHHHHHH
T ss_pred CccceeeCCCCEEEEEEeeeCHHHHHHHHHHHHHHHHHHcCCCceEEEEEEEecCCceEecccccceEEEecHHHHHHhh
Confidence 99999999999999999999999999999999999999999988889988886546677889888899999999999999
Q ss_pred CCCCCHHHHHHHHHhcCCeEEEcCCCCCcceEEEecCCCccccCCcchhhhhhhhhhCCCCCCCCCCCCC---CCChhHH
Q 009703 321 GVSLEAEEVTSLLNRMQLHAERSASGNNQWNINVLVPPTRSDVLHPCDVMEDVAIAYGYNNIPKRKPASV---KPLALNE 397 (528)
Q Consensus 321 G~~l~~~~i~~~L~~lg~~~~~~~~~~~~~~~~V~vP~~R~DI~~~~DliEEIar~yGydni~~~~p~~~---~~~~~~~ 397 (528)
|++++.++|.++|++|||.++..+++ +. |.|+||+||.||+|++||||||||+|||||||.++|... ..++.++
T Consensus 319 G~~i~~~~i~~iL~~Lgf~~~~~~~~-~~--~~V~vPs~R~DI~~e~DLiEEVaRiyGYdnIp~tlP~~~~~g~~~~~~~ 395 (589)
T 3l4g_B 319 GIRETPENLAKLLTRMYLKSEVIGDG-NQ--IEIEIPPTRADIIHACDIVEDAAIAYGYNNIQMTLPKTYTIANQFPLNK 395 (589)
T ss_dssp TCCCCHHHHHHHHHHTTCEEEECSSS-SE--EEEEECSSCTTCCSHHHHHHHHHHHHCGGGSCCCCCCCCCCCCCCHHHH
T ss_pred CCCCCHHHHHHHHHHCCCeEEEcCCC-ce--EEEECCCCccccCCccHHHHHHHHHhCcccCCCcCCCccccCCCCHHHH
Confidence 99999999999999999999764322 35 999999999999999999999999999999999998754 6788899
Q ss_pred HHHHHHHHHHHCCCceeecccccChHHHHHHhccCCCCCcce-eeCCcccchhHHHhhhHHHHHHHHHHccCCCCCccEE
Q 009703 398 FSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIKIY 476 (528)
Q Consensus 398 ~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~~~~~v-l~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~~~~lF 476 (528)
+.+++|+.|+++||+|++||+|+++++++++|+...+..++| |+||+|+|+++|||||+||||+++++|++++.|+|+|
T Consensus 396 ~~~~ir~~l~~~Gf~Evitysf~s~~~~~~~l~~~~~~~~~v~L~NPis~e~svmRtsLlpgLL~~l~~N~~~~~~vrlF 475 (589)
T 3l4g_B 396 LTELLRHDMAAAGFTEALTFALCSQEDIADKLGVDISATKAVHISNPKTAEFQVARTTLLPGLLKTIAANRKMPLPLKLF 475 (589)
T ss_dssp HHHHHHHHHHHTTCEECCCCSEECHHHHTGGGTSCTTSSCCCBBSSCSSGGGSEECSCSHHHHHHHHHHTTTSCSCEEEE
T ss_pred HHHHHHHHHHHCCCEEEecCcccCHHHHHHHhCCCCCCCCeEEEcCCCchhHhHHHHHHHHHHHHHHHHHhcCCCceEEE
Confidence 999999999999999999999999998777777553224679 9999999999999999999999999999987789999
Q ss_pred EeeeeeecCCCcccCcccccEEEEEEecCCCCHHHHHHHHH----hcCCe
Q 009703 477 EVGDVVLLDEKKDVGASCRRRLAALYCGANSGFEVIYLTVL----TKNFT 522 (528)
Q Consensus 477 EiG~V~~~~~~~~~~~~~~~~l~~~~~~~~~~f~~i~~~l~----~~~~~ 522 (528)
|+|+||+++...+.+.++.+++|++++|+..+|+++||+++ .+|++
T Consensus 476 EiG~Vf~~d~~~~~~~~e~~~la~~~~g~~~~f~~lkg~le~ll~~lg~~ 525 (589)
T 3l4g_B 476 EISDIVIKDSNTDVGAKNYRHLCAVYYNKNPGFEIIHGLLDRIMQLLDVP 525 (589)
T ss_dssp EEEEEEEECTTSTTSEEEEEEEEEEEESSSCCHHHHHHHHHHHHHHTTCC
T ss_pred EeeeEEecCCccccCCccccEEEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 99999998765556778899999999999999999999665 57875
|
| >3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli} | Back alignment and structure |
|---|
| >2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B* | Back alignment and structure |
|---|
| >1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B* | Back alignment and structure |
|---|
| >2cxi_A Phenylalanyl-tRNA synthetase beta chain; aminoacyl-tRNA synthetase, ligase, structural genomics; HET: MSE; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
| >2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A* | Back alignment and structure |
|---|
| >3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
| >3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis} | Back alignment and structure |
|---|
| >2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A* | Back alignment and structure |
|---|
| >2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
| >2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} | Back alignment and structure |
|---|
| >2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} | Back alignment and structure |
|---|
| >2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} | Back alignment and structure |
|---|
| >2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} | Back alignment and structure |
|---|
| >3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
| >1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A* | Back alignment and structure |
|---|
| >3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli} | Back alignment and structure |
|---|
| >3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A* | Back alignment and structure |
|---|
| >3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A | Back alignment and structure |
|---|
| >3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A | Back alignment and structure |
|---|
| >3hj7_A TRNA(Ile)-lysidine synthase; helix-turn-helix, pseudo-knot, ATP-binding, ligase, nucleoti binding, tRNA processing; 2.20A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
| >1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A* | Back alignment and structure |
|---|
| >3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP} | Back alignment and structure |
|---|
| >3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans} | Back alignment and structure |
|---|
| >1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1 | Back alignment and structure |
|---|
| >1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A | Back alignment and structure |
|---|
| >3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
| >2cxi_A Phenylalanyl-tRNA synthetase beta chain; aminoacyl-tRNA synthetase, ligase, structural genomics; HET: MSE; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
| >1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A* | Back alignment and structure |
|---|
| >4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis} | Back alignment and structure |
|---|
| >3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A | Back alignment and structure |
|---|
| >1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1 | Back alignment and structure |
|---|
| >1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* | Back alignment and structure |
|---|
| >4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
| >2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A* | Back alignment and structure |
|---|
| >4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens} | Back alignment and structure |
|---|
| >3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
| >2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B* | Back alignment and structure |
|---|
| >3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli} | Back alignment and structure |
|---|
| >1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B* | Back alignment and structure |
|---|
| >3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
| >3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A | Back alignment and structure |
|---|
| >2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A* | Back alignment and structure |
|---|
| >1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A* | Back alignment and structure |
|---|
| >1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 | Back alignment and structure |
|---|
| >1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 | Back alignment and structure |
|---|
| >2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
| >3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A* | Back alignment and structure |
|---|
| >1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A | Back alignment and structure |
|---|
| >1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A | Back alignment and structure |
|---|
| >2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A | Back alignment and structure |
|---|
| >1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C* | Back alignment and structure |
|---|
| >3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A | Back alignment and structure |
|---|
| >1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A* | Back alignment and structure |
|---|
| >1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A* | Back alignment and structure |
|---|
| >1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 528 | ||||
| d1jjcb2 | 75 | a.6.1.1 (B:400-474) Domains B1 and B5 of PheRS-bet | 7e-13 | |
| d1jjcb5 | 207 | d.104.1.1 (B:475-681) Phenyl-tRNA synthetase (PheR | 2e-06 |
| >d1jjcb2 a.6.1.1 (B:400-474) Domains B1 and B5 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]} Length = 75 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Putative DNA-binding domain superfamily: Putative DNA-binding domain family: Domains B1 and B5 of PheRS-beta, PheT domain: Domains B1 and B5 of PheRS-beta, PheT species: Thermus thermophilus [TaxId: 274]
Score = 61.8 bits (150), Expect = 7e-13
Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 5/75 (6%)
Query: 309 MEVSLSYINHTIGVSLEAEEVTSLLNRMQLHAERSASGNNQWNINVLVPPTRSDVLHPCD 368
+ Y N +G S E ++L R+ E V P R D+ D
Sbjct: 5 IPFRPEYANRLLGTSYPEAEQIAILKRLGCRVEGEGPT-----YRVTPPSHRLDLRLEED 59
Query: 369 VMEDVAIAYGYNNIP 383
++E+VA GY IP
Sbjct: 60 LVEEVARIQGYETIP 74
|
| >d1jjcb5 d.104.1.1 (B:475-681) Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, central domain {Thermus thermophilus [TaxId: 274]} Length = 207 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 528 | |||
| d1jjcb6 | 209 | B3/B4 domain of PheRS, PheT {Thermus thermophilus | 99.95 | |
| d1jjcb5 | 207 | Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, | 99.89 | |
| d1jjcb2 | 75 | Domains B1 and B5 of PheRS-beta, PheT {Thermus the | 99.89 | |
| d1jjcb1 | 77 | Domains B1 and B5 of PheRS-beta, PheT {Thermus the | 99.63 | |
| d1jjca_ | 266 | Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS | 97.82 | |
| d1jjcb2 | 75 | Domains B1 and B5 of PheRS-beta, PheT {Thermus the | 97.69 | |
| d1jjcb1 | 77 | Domains B1 and B5 of PheRS-beta, PheT {Thermus the | 96.39 | |
| d1wu7a2 | 327 | Histidyl-tRNA synthetase (HisRS) {Archaeon Thermop | 95.91 | |
| d1z7ma1 | 318 | ATP phosphoribosyltransferase regulatory subunit H | 95.03 | |
| d1kmma2 | 322 | Histidyl-tRNA synthetase (HisRS) {Escherichia coli | 94.19 | |
| d1h4vb2 | 324 | Histidyl-tRNA synthetase (HisRS) {Thermus thermoph | 91.87 | |
| d1nj8a3 | 268 | Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanoc | 91.13 | |
| d1nyra4 | 291 | Threonyl-tRNA synthetase (ThrRS) {Staphylococcus a | 87.99 | |
| d1qe0a2 | 325 | Histidyl-tRNA synthetase (HisRS) {Staphylococcus a | 87.95 | |
| d1c0aa3 | 346 | Aspartyl-tRNA synthetase (AspRS) {Escherichia coli | 84.25 | |
| d1hc7a2 | 272 | Prolyl-tRNA synthetase (ProRS) {Thermus thermophil | 81.66 |
| >d1jjcb6 b.153.1.1 (B:191-399) B3/B4 domain of PheRS, PheT {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: PheT/TilS domain superfamily: PheT/TilS domain family: B3/B4 domain of PheRS, PheT domain: B3/B4 domain of PheRS, PheT species: Thermus thermophilus [TaxId: 274]
Probab=99.95 E-value=1.3e-28 Score=232.32 Aligned_cols=154 Identities=14% Similarity=0.136 Sum_probs=131.4
Q ss_pred eEEEeccCCCCCCeEEEEEEEccccCCCCCCCHHHHHHHHHhcCCC-CCcEeehhhhhhhccCCC---eEEEecCCCceE
Q 009703 109 QMHVKPETSSIRPYVVCAVLRDISFDEASYNSFIDLQDKLHQNICR-RRTLVAIGTHDLDTLQGP---FTYEALPPSHIN 184 (528)
Q Consensus 109 ~i~V~~~~~~~rp~~~~~vi~~v~~~~~~~~s~~~lQekL~~~~~r-~r~~VdIgn~Dldki~~p---~~y~~~~~~~i~ 184 (528)
++.|+.++++.||+|.+++|+||++.+ ||.|||+||...+.| +|++|||+||.|.++||| |++++.. +.+.
T Consensus 9 ~~~i~ie~~~~C~~y~~~~I~~v~~~~----SP~wlk~rL~~~Gir~iN~iVDItNYVmle~GqPlH~fD~dki~-~~i~ 83 (209)
T d1jjcb6 9 PFALKVEDPEGAPHFTLGYAFGLRVAP----SPLWMQRALFAAGMRPINNVVDVTNYVMLERAQPMHAFDLRFVG-EGIA 83 (209)
T ss_dssp SSEEEESCTTTCSEEEEEEEESCCCCC----CCHHHHHHHHHTTCCCCCHHHHHHHHHHHHHTCCEEEEEGGGTB-TEEE
T ss_pred CeEEEeeCccCCCcEEEEEEECCccCC----CHHHHHHHHHHcCCCccchhhhhHHHHHHHhccchhhhhhhccc-ccee
Confidence 466666779999999999999999874 899999999999999 599999999999999999 4444444 4677
Q ss_pred EEeCCCcccCChHHHHHhhcccccccceeecccCCCcceEEE----eCCCCeeecCCcccCCceeeecCCceEEEEec--
Q 009703 185 FVPLKQTRDFTADELMEFYKSDLKLKKYLHIIENSPLYPVLY----DQNRTVLSLPPIINGAHSAITLKTKNVFIECT-- 258 (528)
Q Consensus 185 f~~L~~~~~~~~~el~~l~~~~~~l~~y~~ii~~~~~~pVI~----D~~g~vlslagIigg~~s~It~~T~nI~iE~a-- 258 (528)
++.... ++++..|++++++|.+ ..+||+ |++ +|+||||||||.+|+|+++|+|||||+|
T Consensus 84 vr~a~~-----~E~~~~Ld~~~~~L~~---------~~lvI~~~~~d~~-~~ialAGimGg~~s~v~~~T~~I~lEsA~F 148 (209)
T d1jjcb6 84 VRRARE-----GERLKTLDGVERTLHP---------EDLVIAGWRGEES-FPLGLAGVMGGAESEVREDTEAIALEVACF 148 (209)
T ss_dssp EEECCT-----TCEEEBTTSCEEECCT---------TCEEEEEEETTEE-EEEEETTTEEBSTTCCCTTCCCEEEEEEEC
T ss_pred eeccCC-----CCEEEecCccccccCC---------CceEEEecccccc-ccEEEeeeeccccccccccchhEEEEEeec
Confidence 777754 3557788889999974 469999 555 4999999999999999999999999999
Q ss_pred ------------------------ccChHhHHHHHHHHHHHHHHHhcC
Q 009703 259 ------------------------ATDLTKAKIVLNTMVTIFSEYCKR 282 (528)
Q Consensus 259 ------------------------g~D~~~~~~al~~~~~~l~~~~~~ 282 (528)
|+||..+..|+++++.++.++|++
T Consensus 149 ~p~~Ir~tsr~l~l~TdaS~RfErGvDp~~~~~al~ra~~Li~e~~gg 196 (209)
T d1jjcb6 149 DPVSIRKTARRHGLRTEASHRFERGVDPLGQVPAQRRALSLLQALAGA 196 (209)
T ss_dssp CHHHHHHHHHHTTCCCHHHHHHHHCCCTTCHHHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHhhCcchhhHHHhhcCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 556777889999999999999976
|
| >d1jjcb5 d.104.1.1 (B:475-681) Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, central domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1jjcb2 a.6.1.1 (B:400-474) Domains B1 and B5 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1jjcb1 a.6.1.1 (B:1-38,B:152-190) Domains B1 and B5 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1jjca_ d.104.1.1 (A:) Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1jjcb2 a.6.1.1 (B:400-474) Domains B1 and B5 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1jjcb1 a.6.1.1 (B:1-38,B:152-190) Domains B1 and B5 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1wu7a2 d.104.1.1 (A:3-329) Histidyl-tRNA synthetase (HisRS) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
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| >d1z7ma1 d.104.1.1 (A:6-323) ATP phosphoribosyltransferase regulatory subunit HisZ {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
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| >d1kmma2 d.104.1.1 (A:4-325) Histidyl-tRNA synthetase (HisRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1h4vb2 d.104.1.1 (B:2-325) Histidyl-tRNA synthetase (HisRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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| >d1nj8a3 d.104.1.1 (A:0-267) Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]} | Back information, alignment and structure |
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| >d1nyra4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
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| >d1qe0a2 d.104.1.1 (A:1-325) Histidyl-tRNA synthetase (HisRS) {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
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| >d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1hc7a2 d.104.1.1 (A:5-276) Prolyl-tRNA synthetase (ProRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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