Citrus Sinensis ID: 009708
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 528 | 2.2.26 [Sep-21-2011] | |||||||
| P72943 | 446 | Ribosomal RNA small subun | N/A | no | 0.770 | 0.912 | 0.345 | 4e-51 | |
| P94464 | 447 | Ribosomal RNA small subun | yes | no | 0.706 | 0.834 | 0.299 | 2e-48 | |
| A9R925 | 429 | Ribosomal RNA small subun | yes | no | 0.727 | 0.895 | 0.321 | 4e-44 | |
| B1JJH6 | 429 | Ribosomal RNA small subun | yes | no | 0.727 | 0.895 | 0.321 | 1e-43 | |
| Q664V2 | 429 | Ribosomal RNA small subun | yes | no | 0.727 | 0.895 | 0.321 | 1e-43 | |
| A4TH21 | 429 | Ribosomal RNA small subun | yes | no | 0.727 | 0.895 | 0.321 | 1e-43 | |
| Q1CCX4 | 429 | Ribosomal RNA small subun | yes | no | 0.727 | 0.895 | 0.321 | 1e-43 | |
| Q8ZJ81 | 429 | Ribosomal RNA small subun | yes | no | 0.727 | 0.895 | 0.321 | 1e-43 | |
| B2K506 | 429 | Ribosomal RNA small subun | yes | no | 0.727 | 0.895 | 0.321 | 1e-43 | |
| Q1C2X7 | 429 | Ribosomal RNA small subun | yes | no | 0.727 | 0.895 | 0.321 | 1e-43 |
| >sp|P72943|RSMB_SYNY3 Ribosomal RNA small subunit methyltransferase B OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=rsmB PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 202 bits (515), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 147/426 (34%), Positives = 213/426 (50%), Gaps = 19/426 (4%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D R T++V G +R +R LD LI L ++ P L +I+++G Y++ LD
Sbjct: 35 LSPPDRRFCTELVYGVVRRQRTLDCLIEQL--GDRPIGKQPPDLRRIVQLGLYQLRYLDQ 92
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A V+ V LAK G +VNG+LR+ ++ L + + +L
Sbjct: 93 VPASAAVNTGVDLAKANGLKGLSKVVNGMLRRYQRAEEQGKNILDQ-------EKISLGE 145
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
YS P W++ + + G+ E L + N +PS LR N K +R ++ L L L
Sbjct: 146 QYSFPDWLMELFEQTWGKAETESLCAYFNQNPSLDLRINPLK-TSRVEVAQSLAELNLTT 204
Query: 286 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 345
L + KTG + Q EG VQD SA V +++PQP ++I D CAA
Sbjct: 205 TAMAGLPQGLRLGGKTG--AITQLPGFAEGWWTVQDASAQWVAQILNPQPEETIFDVCAA 262
Query: 346 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 405
PGGKT ++A + QG +YA D + RL+ L T + + S I+ DL V
Sbjct: 263 PGGKTTHIAELMGDQGQIYAGDRHGWRLQKLAVTQQRLGLTS-IKIWEGDLTQPGVKPPV 321
Query: 406 K-CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464
+ D+ LLD PCSGLG L + DLRW + + L LQ LL A + LVK GG LVYS
Sbjct: 322 ELVDRALLDVPCSGLGTLHRNPDLRWRQTPATIATLLPLQQALLKAIAPLVKSGGTLVYS 381
Query: 465 TCSIDPEENEERVEAFLLRHPEFSIDPADGLVP---SDFVTKHGFFFSDPIKHSLDGAFA 521
TC+++P ENE ++E FL H ++ +P + P ++ VT G P H DG F
Sbjct: 382 TCTLNPAENEAQIERFLQDHEDWRSEPFEWTSPQGQTNSVTS-GMLTILPHHHHQDGFFI 440
Query: 522 ARLVRA 527
A L +A
Sbjct: 441 ANLKKA 446
|
Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: - |
| >sp|P94464|RSMB_BACSU Ribosomal RNA small subunit methyltransferase B OS=Bacillus subtilis (strain 168) GN=rsmB PE=3 SV=2 | Back alignment and function description |
|---|
Score = 194 bits (492), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 117/391 (29%), Positives = 218/391 (55%), Gaps = 18/391 (4%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
++ +L D++ L+T++V GT++ + LD+++ + + ++P ++Q+LR+ Y++
Sbjct: 32 IKSNELSDQNRGLLTELVYGTLQNKIALDYMLKPFINKPQ---KVKPWVIQLLRLSLYQM 88
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
L+ +P A + E V +AK+ G + VNG+LR + +P + +
Sbjct: 89 EYLEKIPDRAAIHEAVEIAKIRGHKGIASFVNGVLRSI------QREGVPSFDAIEDP-V 141
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
R LAT SHP W+V+ W G E A K+ + P +LR N K RA+L+ Q+
Sbjct: 142 RRLATETSHPEWLVKEWADAYGFEAAEKICRIHLIPPKQTLRVNQMKA-DRAELLDQMAA 200
Query: 281 LKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 340
++V E ++ +++ G + + G ++QDES+ LV +DP+ ++++
Sbjct: 201 EGIEV--EKGDLAEDAVKLLKG--TIAGTHFFQNGEVSIQDESSMLVARALDPKSDETVL 256
Query: 341 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400
D CAAPGGK+ ++A + +G V ++D++K +++++ E A + ++I D R
Sbjct: 257 DACAAPGGKSAHIAELMKNKGSVTSLDLHKHKVKLIKEAADRLGL-TIIHAETMDARKAG 315
Query: 401 DN-STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459
+ + D++L+DAPCSG GV+ ++ D+++ ++ +D L +Q +L + LVK GG
Sbjct: 316 ETFENEQFDRILVDAPCSGFGVIRRKPDMKYTKKPDDSARLAEIQLSILREIAPLVKKGG 375
Query: 460 VLVYSTCSIDPEENEERVEAFLLRHPEFSID 490
LVYSTC++D EN+E + AF+ HP+F D
Sbjct: 376 TLVYSTCTMDRTENDEVIHAFIQEHPDFEPD 406
|
Bacillus subtilis (strain 168) (taxid: 224308) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|A9R925|RSMB_YERPG Ribosomal RNA small subunit methyltransferase B OS=Yersinia pestis bv. Antiqua (strain Angola) GN=rsmB PE=3 SV=2 | Back alignment and function description |
|---|
Score = 179 bits (455), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 135/420 (32%), Positives = 217/420 (51%), Gaps = 36/420 (8%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K++ D+D L+ ++ GT+R L+ I L + + + + ++ +G Y+++
Sbjct: 34 KNISDKDRALLQELCFGTLRVLPQLEWCIQQLM--ARPMTGKQRVFHYLIMVGLYQLIYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A V RP L+NG+LR+ + L + ND
Sbjct: 92 RIPPHAALAETVEGATVLKRPQLKGLINGVLRQF---QRQQVELLERAVNND-------- 140
Query: 225 TIYSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKL 283
+ Y HP W++ R + Y Q + I + NN P LR N R+ +R++ + L +
Sbjct: 141 SHYLHPSWLLARIKQAYPAQWQQI--LDANNQRPPMWLRVN-RQHHSRSEYLELLTQADI 197
Query: 284 QV-PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 342
PH + + +R+ T V + G VQD SA V ++DPQ G+ I+D
Sbjct: 198 NAEPHPI---YRDAVRLITPC-AVNHLPGFELGWVTVQDASAQGCVDLLDPQNGEQILDL 253
Query: 343 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR---TF 399
CAAPGGKT ++ + + V A+DI++ RL + E + Q+ +V+R D R T+
Sbjct: 254 CAAPGGKTTHILEA-APKAHVLAVDIDEQRLSRVKENLQRLQLQAVVRV--GDGRAPDTW 310
Query: 400 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459
+ + D++LLDAPCS GV+ + D++W RR D+ EL LQ E+++A +K GG
Sbjct: 311 CGDQ--QFDRILLDAPCSATGVIRRHPDIKWLRRDRDISELAQLQSEIIEAIWPKLKHGG 368
Query: 460 VLVYSTCSIDPEENEERVEAFLLRHPEFSI-DPADGLVPSDFVTKH-----GFFFSDPIK 513
VLVY+TCSI PEEN++++ AFL RHPE + + P H GFF++ IK
Sbjct: 369 VLVYATCSILPEENQQQIAAFLQRHPEAQLTETGTTAAPGKQNLPHPEDGDGFFYAKIIK 428
|
Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. Yersinia pestis bv. Antiqua (strain Angola) (taxid: 349746) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 6 |
| >sp|B1JJH6|RSMB_YERPY Ribosomal RNA small subunit methyltransferase B OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=rsmB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 177 bits (450), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 135/420 (32%), Positives = 216/420 (51%), Gaps = 36/420 (8%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K++ D+D L+ ++ GT+R L+ I L + + + + ++ +G Y+++
Sbjct: 34 KNISDKDRALLQELCFGTLRVLPQLEWCIQQLM--ARPMTGKQRVFHYLIMVGLYQLIYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A V RP L+NG+LR+ + L + ND
Sbjct: 92 RIPPHAALAETVEGATVLKRPQLKGLINGVLRQF---QRQQVELLERAVNND-------- 140
Query: 225 TIYSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKL 283
+ Y HP W++ R + Y Q + I + NN P LR N R +R++ + L +
Sbjct: 141 SHYLHPSWLLARIKQAYPAQWQQI--LDANNQRPPMWLRVN-RLHHSRSEYLELLTQADI 197
Query: 284 QV-PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 342
PH + + +R+ T V + G VQD SA V ++DPQ G+ I+D
Sbjct: 198 NAEPHPI---YRDAVRLITPC-AVNHLPGFELGWVTVQDASAQGCVDLLDPQNGEQILDL 253
Query: 343 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR---TF 399
CAAPGGKT ++ + + V A+DI++ RL + E + Q+ +V+R D R T+
Sbjct: 254 CAAPGGKTTHILEA-APKAHVLAVDIDEQRLSRVKENLQRLQLQAVVRV--GDGRAPDTW 310
Query: 400 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459
+ + D++LLDAPCS GV+ + D++W RR D+ EL LQ E+++A +K GG
Sbjct: 311 CGDQ--QFDRILLDAPCSATGVIRRHPDIKWLRRDRDISELAQLQSEIIEAIWPKLKHGG 368
Query: 460 VLVYSTCSIDPEENEERVEAFLLRHPEFSI-DPADGLVPSDFVTKH-----GFFFSDPIK 513
VLVY+TCSI PEEN++++ AFL RHPE + + P H GFF++ IK
Sbjct: 369 VLVYATCSILPEENQQQIAAFLQRHPEAQLTETGTTAAPGKQNLPHPEDGDGFFYAKIIK 428
|
Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. Yersinia pseudotuberculosis serotype O:3 (strain YPIII) (taxid: 502800) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 6 |
| >sp|Q664V2|RSMB_YERPS Ribosomal RNA small subunit methyltransferase B OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=rsmB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 177 bits (450), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 135/420 (32%), Positives = 216/420 (51%), Gaps = 36/420 (8%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K++ D+D L+ ++ GT+R L+ I L + + + + ++ +G Y+++
Sbjct: 34 KNISDKDRALLQELCFGTLRVLPQLEWCIQQLM--ARPMTGKQRVFHYLIMVGLYQLIYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A V RP L+NG+LR+ + L + ND
Sbjct: 92 RIPPHAALAETVEGATVLKRPQLKGLINGVLRQF---QRQQVELLERAVNND-------- 140
Query: 225 TIYSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKL 283
+ Y HP W++ R + Y Q + I + NN P LR N R +R++ + L +
Sbjct: 141 SHYLHPSWLLARIKQAYPAQWQQI--LDANNQRPPMWLRVN-RLHHSRSEYLELLTQADI 197
Query: 284 QV-PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 342
PH + + +R+ T V + G VQD SA V ++DPQ G+ I+D
Sbjct: 198 NAEPHPI---YRDAVRLITPC-AVNHLPGFELGWVTVQDASAQGCVDLLDPQNGEQILDL 253
Query: 343 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR---TF 399
CAAPGGKT ++ + + V A+DI++ RL + E + Q+ +V+R D R T+
Sbjct: 254 CAAPGGKTTHILEA-APKAHVLAVDIDEQRLSRVKENLQRLQLQAVVRV--GDGRAPDTW 310
Query: 400 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459
+ + D++LLDAPCS GV+ + D++W RR D+ EL LQ E+++A +K GG
Sbjct: 311 CGDQ--QFDRILLDAPCSATGVIRRHPDIKWLRRDRDISELAQLQSEIIEAIWPKLKHGG 368
Query: 460 VLVYSTCSIDPEENEERVEAFLLRHPEFSI-DPADGLVPSDFVTKH-----GFFFSDPIK 513
VLVY+TCSI PEEN++++ AFL RHPE + + P H GFF++ IK
Sbjct: 369 VLVYATCSILPEENQQQIAAFLQRHPEAQLTETGTTAAPGKQNLPHPEDGDGFFYAKIIK 428
|
Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. Yersinia pseudotuberculosis (taxid: 633) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 6 |
| >sp|A4TH21|RSMB_YERPP Ribosomal RNA small subunit methyltransferase B OS=Yersinia pestis (strain Pestoides F) GN=rsmB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 177 bits (450), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 135/420 (32%), Positives = 216/420 (51%), Gaps = 36/420 (8%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K++ D+D L+ ++ GT+R L+ I L + + + + ++ +G Y+++
Sbjct: 34 KNISDKDRALLQELCFGTLRVLPQLEWCIQQLM--ARPMTGKQRVFHYLIMVGLYQLIYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A V RP L+NG+LR+ + L + ND
Sbjct: 92 RIPPHAALAETVEGATVLKRPQLKGLINGVLRQF---QRQQVELLERAVNND-------- 140
Query: 225 TIYSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKL 283
+ Y HP W++ R + Y Q + I + NN P LR N R +R++ + L +
Sbjct: 141 SHYLHPSWLLARIKQAYPAQWQQI--LDANNQRPPMWLRVN-RLHHSRSEYLELLTQADI 197
Query: 284 QV-PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 342
PH + + +R+ T V + G VQD SA V ++DPQ G+ I+D
Sbjct: 198 NAEPHPI---YRDAVRLITPC-AVNHLPGFELGWVTVQDASAQGCVDLLDPQNGEQILDL 253
Query: 343 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR---TF 399
CAAPGGKT ++ + + V A+DI++ RL + E + Q+ +V+R D R T+
Sbjct: 254 CAAPGGKTTHILEA-APKAHVLAVDIDEQRLSRVKENLQRLQLQAVVRV--GDGRAPDTW 310
Query: 400 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459
+ + D++LLDAPCS GV+ + D++W RR D+ EL LQ E+++A +K GG
Sbjct: 311 CGDQ--QFDRILLDAPCSATGVIRRHPDIKWLRRDRDISELAQLQSEIIEAIWPKLKHGG 368
Query: 460 VLVYSTCSIDPEENEERVEAFLLRHPEFSI-DPADGLVPSDFVTKH-----GFFFSDPIK 513
VLVY+TCSI PEEN++++ AFL RHPE + + P H GFF++ IK
Sbjct: 369 VLVYATCSILPEENQQQIAAFLQRHPEAQLTETGTTAAPGKQNLPHPEDGDGFFYAKIIK 428
|
Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. Yersinia pestis (strain Pestoides F) (taxid: 386656) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 6 |
| >sp|Q1CCX4|RSMB_YERPN Ribosomal RNA small subunit methyltransferase B OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=rsmB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 177 bits (450), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 135/420 (32%), Positives = 216/420 (51%), Gaps = 36/420 (8%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K++ D+D L+ ++ GT+R L+ I L + + + + ++ +G Y+++
Sbjct: 34 KNISDKDRALLQELCFGTLRVLPQLEWCIQQLM--ARPMTGKQRVFHYLIMVGLYQLIYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A V RP L+NG+LR+ + L + ND
Sbjct: 92 RIPPHAALAETVEGATVLKRPQLKGLINGVLRQF---QRQQVELLERAVNND-------- 140
Query: 225 TIYSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKL 283
+ Y HP W++ R + Y Q + I + NN P LR N R +R++ + L +
Sbjct: 141 SHYLHPSWLLARIKQAYPAQWQQI--LDANNQRPPMWLRVN-RLHHSRSEYLELLTQADI 197
Query: 284 QV-PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 342
PH + + +R+ T V + G VQD SA V ++DPQ G+ I+D
Sbjct: 198 NAEPHPI---YRDAVRLITPC-AVNHLPGFELGWVTVQDASAQGCVDLLDPQNGEQILDL 253
Query: 343 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR---TF 399
CAAPGGKT ++ + + V A+DI++ RL + E + Q+ +V+R D R T+
Sbjct: 254 CAAPGGKTTHILEA-APKAHVLAVDIDEQRLSRVKENLQRLQLQAVVRV--GDGRAPDTW 310
Query: 400 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459
+ + D++LLDAPCS GV+ + D++W RR D+ EL LQ E+++A +K GG
Sbjct: 311 CGDQ--QFDRILLDAPCSATGVIRRHPDIKWLRRDRDISELAQLQSEIIEAIWPKLKHGG 368
Query: 460 VLVYSTCSIDPEENEERVEAFLLRHPEFSI-DPADGLVPSDFVTKH-----GFFFSDPIK 513
VLVY+TCSI PEEN++++ AFL RHPE + + P H GFF++ IK
Sbjct: 369 VLVYATCSILPEENQQQIAAFLQRHPEAQLTETGTTAAPGKQNLPHPEDGDGFFYAKIIK 428
|
Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. Yersinia pestis bv. Antiqua (strain Nepal516) (taxid: 377628) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 6 |
| >sp|Q8ZJ81|RSMB_YERPE Ribosomal RNA small subunit methyltransferase B OS=Yersinia pestis GN=rsmB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 177 bits (450), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 135/420 (32%), Positives = 216/420 (51%), Gaps = 36/420 (8%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K++ D+D L+ ++ GT+R L+ I L + + + + ++ +G Y+++
Sbjct: 34 KNISDKDRALLQELCFGTLRVLPQLEWCIQQLM--ARPMTGKQRVFHYLIMVGLYQLIYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A V RP L+NG+LR+ + L + ND
Sbjct: 92 RIPPHAALAETVEGATVLKRPQLKGLINGVLRQF---QRQQVELLERAVNND-------- 140
Query: 225 TIYSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKL 283
+ Y HP W++ R + Y Q + I + NN P LR N R +R++ + L +
Sbjct: 141 SHYLHPSWLLARIKQAYPAQWQQI--LDANNQRPPMWLRVN-RLHHSRSEYLELLTQADI 197
Query: 284 QV-PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 342
PH + + +R+ T V + G VQD SA V ++DPQ G+ I+D
Sbjct: 198 NAEPHPI---YRDAVRLITPC-AVNHLPGFELGWVTVQDASAQGCVDLLDPQNGEQILDL 253
Query: 343 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR---TF 399
CAAPGGKT ++ + + V A+DI++ RL + E + Q+ +V+R D R T+
Sbjct: 254 CAAPGGKTTHILEA-APKAHVLAVDIDEQRLSRVKENLQRLQLQAVVRV--GDGRAPDTW 310
Query: 400 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459
+ + D++LLDAPCS GV+ + D++W RR D+ EL LQ E+++A +K GG
Sbjct: 311 CGDQ--QFDRILLDAPCSATGVIRRHPDIKWLRRDRDISELAQLQSEIIEAIWPKLKHGG 368
Query: 460 VLVYSTCSIDPEENEERVEAFLLRHPEFSI-DPADGLVPSDFVTKH-----GFFFSDPIK 513
VLVY+TCSI PEEN++++ AFL RHPE + + P H GFF++ IK
Sbjct: 369 VLVYATCSILPEENQQQIAAFLQRHPEAQLTETGTTAAPGKQNLPHPEDGDGFFYAKIIK 428
|
Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. Yersinia pestis (taxid: 632) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 6 |
| >sp|B2K506|RSMB_YERPB Ribosomal RNA small subunit methyltransferase B OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=rsmB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 177 bits (450), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 135/420 (32%), Positives = 216/420 (51%), Gaps = 36/420 (8%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K++ D+D L+ ++ GT+R L+ I L + + + + ++ +G Y+++
Sbjct: 34 KNISDKDRALLQELCFGTLRVLPQLEWCIQQLM--ARPMTGKQRVFHYLIMVGLYQLIYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A V RP L+NG+LR+ + L + ND
Sbjct: 92 RIPPHAALAETVEGATVLKRPQLKGLINGVLRQF---QRQQVELLERAVNND-------- 140
Query: 225 TIYSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKL 283
+ Y HP W++ R + Y Q + I + NN P LR N R +R++ + L +
Sbjct: 141 SHYLHPSWLLARIKQAYPAQWQQI--LDANNQRPPMWLRVN-RLHHSRSEYLELLTQADI 197
Query: 284 QV-PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 342
PH + + +R+ T V + G VQD SA V ++DPQ G+ I+D
Sbjct: 198 NAEPHPI---YRDAVRLITPC-AVNHLPGFELGWVTVQDASAQGCVDLLDPQNGEQILDL 253
Query: 343 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR---TF 399
CAAPGGKT ++ + + V A+DI++ RL + E + Q+ +V+R D R T+
Sbjct: 254 CAAPGGKTTHILEA-APKAHVLAVDIDEQRLSRVKENLQRLQLQAVVRV--GDGRAPDTW 310
Query: 400 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459
+ + D++LLDAPCS GV+ + D++W RR D+ EL LQ E+++A +K GG
Sbjct: 311 CGDQ--QFDRILLDAPCSATGVIRRHPDIKWLRRDRDISELAQLQSEIIEAIWPKLKHGG 368
Query: 460 VLVYSTCSIDPEENEERVEAFLLRHPEFSI-DPADGLVPSDFVTKH-----GFFFSDPIK 513
VLVY+TCSI PEEN++++ AFL RHPE + + P H GFF++ IK
Sbjct: 369 VLVYATCSILPEENQQQIAAFLQRHPEAQLTETGTTAAPGKQNLPHPEDGDGFFYAKIIK 428
|
Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. Yersinia pseudotuberculosis serotype IB (strain PB1/+) (taxid: 502801) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 6 |
| >sp|Q1C2X7|RSMB_YERPA Ribosomal RNA small subunit methyltransferase B OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=rsmB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 177 bits (450), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 135/420 (32%), Positives = 216/420 (51%), Gaps = 36/420 (8%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K++ D+D L+ ++ GT+R L+ I L + + + + ++ +G Y+++
Sbjct: 34 KNISDKDRALLQELCFGTLRVLPQLEWCIQQLM--ARPMTGKQRVFHYLIMVGLYQLIYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A V RP L+NG+LR+ + L + ND
Sbjct: 92 RIPPHAALAETVEGATVLKRPQLKGLINGVLRQF---QRQQVELLERAVNND-------- 140
Query: 225 TIYSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKL 283
+ Y HP W++ R + Y Q + I + NN P LR N R +R++ + L +
Sbjct: 141 SHYLHPSWLLARIKQAYPAQWQQI--LDANNQRPPMWLRVN-RLHHSRSEYLELLTQADI 197
Query: 284 QV-PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 342
PH + + +R+ T V + G VQD SA V ++DPQ G+ I+D
Sbjct: 198 NAEPHPI---YRDAVRLITPC-AVNHLPGFELGWVTVQDASAQGCVDLLDPQNGEQILDL 253
Query: 343 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR---TF 399
CAAPGGKT ++ + + V A+DI++ RL + E + Q+ +V+R D R T+
Sbjct: 254 CAAPGGKTTHILEA-APKAHVLAVDIDEQRLSRVKENLQRLQLQAVVRV--GDGRAPDTW 310
Query: 400 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459
+ + D++LLDAPCS GV+ + D++W RR D+ EL LQ E+++A +K GG
Sbjct: 311 CGDQ--QFDRILLDAPCSATGVIRRHPDIKWLRRDRDISELAQLQSEIIEAIWPKLKHGG 368
Query: 460 VLVYSTCSIDPEENEERVEAFLLRHPEFSI-DPADGLVPSDFVTKH-----GFFFSDPIK 513
VLVY+TCSI PEEN++++ AFL RHPE + + P H GFF++ IK
Sbjct: 369 VLVYATCSILPEENQQQIAAFLQRHPEAQLTETGTTAAPGKQNLPHPEDGDGFFYAKIIK 428
|
Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. Yersinia pestis bv. Antiqua (strain Antiqua) (taxid: 360102) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 6 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 528 | ||||||
| 224061230 | 527 | predicted protein [Populus trichocarpa] | 0.990 | 0.992 | 0.803 | 0.0 | |
| 255563540 | 527 | ribosomal RNA small subunit methyltransf | 0.990 | 0.992 | 0.769 | 0.0 | |
| 225461943 | 525 | PREDICTED: ribosomal RNA small subunit m | 0.988 | 0.994 | 0.791 | 0.0 | |
| 22331043 | 523 | ribosomal RNA small subunit methyltransf | 0.990 | 1.0 | 0.750 | 0.0 | |
| 356501644 | 528 | PREDICTED: ribosomal RNA small subunit m | 0.935 | 0.935 | 0.787 | 0.0 | |
| 10172606 | 531 | unnamed protein product [Arabidopsis tha | 0.990 | 0.984 | 0.739 | 0.0 | |
| 357495101 | 654 | Ribosomal RNA small subunit methyltransf | 0.920 | 0.743 | 0.762 | 0.0 | |
| 297834138 | 525 | NOL1/NOP2/sun family protein [Arabidopsi | 0.990 | 0.996 | 0.738 | 0.0 | |
| 115479747 | 570 | Os09g0477900 [Oryza sativa Japonica Grou | 0.950 | 0.880 | 0.677 | 0.0 | |
| 218202330 | 570 | hypothetical protein OsI_31764 [Oryza sa | 0.950 | 0.880 | 0.677 | 0.0 |
| >gi|224061230|ref|XP_002300381.1| predicted protein [Populus trichocarpa] gi|222847639|gb|EEE85186.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 869 bits (2245), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/530 (80%), Positives = 471/530 (88%), Gaps = 7/530 (1%)
Query: 3 MAQAVSLPRILVSTDASK-ALSKQAASTRKPRTSISTKKRAKVSPS---RRTQNLNLEVS 58
MAQ +SL + S + K SK KP+TS+ST+++A SP R+TQ LNL+VS
Sbjct: 1 MAQVLSL-HVFFSAEIHKVGPSKPLKRIHKPKTSLSTRRKATQSPQSPLRKTQKLNLQVS 59
Query: 59 PHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDI 118
PHRAVSAVRLMRI+ GGAFADLLN KGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDI
Sbjct: 60 PHRAVSAVRLMRIEMGGAFADLLNDKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDI 119
Query: 119 VGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVRL 178
VGGTIRWRRYLD+LI LCHDEK F SMEPLLLQILRIGFYEIVKLDMP YAVVDENVRL
Sbjct: 120 VGGTIRWRRYLDYLIGSLCHDEKAFRSMEPLLLQILRIGFYEIVKLDMPSYAVVDENVRL 179
Query: 179 AKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWT 238
AKV+LRPGAGN+VNGILRKLVLLK++NSLPLPKLEG+DRAQARALAT+YSHPVWMVRRWT
Sbjct: 180 AKVSLRPGAGNMVNGILRKLVLLKESNSLPLPKLEGDDRAQARALATLYSHPVWMVRRWT 239
Query: 239 KYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIR 298
K LGQE+AIKLM+WNN +PSFSLRANS KGVTRADLVMQ N+LK VPHELSLHLD F+R
Sbjct: 240 KLLGQEKAIKLMMWNNDNPSFSLRANSGKGVTRADLVMQFNMLK--VPHELSLHLDHFVR 297
Query: 299 VKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLS 358
VKTGLQ VIQAGLLK+GLCAVQDESAGL+V+VV+PQPG SI+DCCAAPGGKTLYMAS +
Sbjct: 298 VKTGLQIVIQAGLLKQGLCAVQDESAGLIVSVVNPQPGDSIIDCCAAPGGKTLYMASQMH 357
Query: 359 GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSG 418
GQG++YAIDINKGRLRI+ ETAKLHQV+ VI TI +DLRTFA++ +K DKVLLDAPCSG
Sbjct: 358 GQGMLYAIDINKGRLRIVKETAKLHQVDGVITTIPSDLRTFAESYQLKSDKVLLDAPCSG 417
Query: 419 LGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVE 478
LGVLSKRADLRWNRRLED+EELK LQ+ELLDAAS+LVKPGGVLVYSTCSIDPEENEERV+
Sbjct: 418 LGVLSKRADLRWNRRLEDLEELKKLQEELLDAASILVKPGGVLVYSTCSIDPEENEERVD 477
Query: 479 AFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLVRAF 528
AFLLRHPEF IDP D VP DFVTK GF+ SDP+KHS+DGAFAARL+R
Sbjct: 478 AFLLRHPEFRIDPVDRYVPPDFVTKRGFYSSDPVKHSMDGAFAARLIRTL 527
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255563540|ref|XP_002522772.1| ribosomal RNA small subunit methyltransferase B, putative [Ricinus communis] gi|223538010|gb|EEF39623.1| ribosomal RNA small subunit methyltransferase B, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 838 bits (2166), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 408/530 (76%), Positives = 460/530 (86%), Gaps = 7/530 (1%)
Query: 3 MAQAVSLPRILVSTDASKALS----KQAASTRKPRTSISTKKRAKVSPSRRTQNLNLEVS 58
MA +SL + +S D SK K + KP+ S+S ++ VSP ++TQ LNLEVS
Sbjct: 1 MAHVLSL-HVYLSADTSKTARCMPLKFSKRANKPKKSLSAPRKGPVSPLKKTQKLNLEVS 59
Query: 59 PHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDI 118
PHRAVSAVRLMRI+ GGAFADLLN+KGKGSG+NEMGYVERTLGFRTK+LDDRDLRLVTD+
Sbjct: 60 PHRAVSAVRLMRIEMGGAFADLLNEKGKGSGENEMGYVERTLGFRTKNLDDRDLRLVTDV 119
Query: 119 VGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVRL 178
VGGTIRWRR+LDHLIC L HDE TF SMEPLLLQILRIG YEIVKLDMPPYAVVDENVRL
Sbjct: 120 VGGTIRWRRFLDHLICSLFHDENTFRSMEPLLLQILRIGAYEIVKLDMPPYAVVDENVRL 179
Query: 179 AKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWT 238
AKVALRPGAGN+VNGILRKLVLLK+NNSLPLPKLEG+ RAQARALAT++SHPVWMVRRWT
Sbjct: 180 AKVALRPGAGNMVNGILRKLVLLKENNSLPLPKLEGDARAQARALATLHSHPVWMVRRWT 239
Query: 239 KYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIR 298
KYLGQEEAI+LM+WNNSDPSFSLRAN KGVTR DLV +LNLLK VP+ELS + D F+R
Sbjct: 240 KYLGQEEAIRLMIWNNSDPSFSLRANGGKGVTRDDLVTRLNLLK--VPYELSPYSDHFVR 297
Query: 299 VKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLS 358
++TGLQ V+QAGLLKEG C+VQDESAGLVV++V+PQPG SI+DCCAAPGGKT+YMAS +
Sbjct: 298 MRTGLQIVLQAGLLKEGFCSVQDESAGLVVSIVNPQPGDSIIDCCAAPGGKTVYMASLME 357
Query: 359 GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSG 418
GQG+VYAIDINKGRLRIL ETAKLHQ++ VI + +DLR A+N +K DKVLLDAPCSG
Sbjct: 358 GQGMVYAIDINKGRLRILQETAKLHQIDGVITAVPSDLRVLAENYPMKSDKVLLDAPCSG 417
Query: 419 LGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVE 478
LGVLSKRADLRWNRR+ED+EELK LQDELLDAAS LVKPGG LVYSTCSIDPEENEERV+
Sbjct: 418 LGVLSKRADLRWNRRVEDLEELKNLQDELLDAASTLVKPGGFLVYSTCSIDPEENEERVD 477
Query: 479 AFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLVRAF 528
AFLLRHPEF IDP D VP D VT+ GF+ S P+KHS+DGAFAARLV+A
Sbjct: 478 AFLLRHPEFQIDPVDRYVPPDLVTERGFYSSSPVKHSIDGAFAARLVKAL 527
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225461943|ref|XP_002266112.1| PREDICTED: ribosomal RNA small subunit methyltransferase B [Vitis vinifera] gi|296089930|emb|CBI39749.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 830 bits (2143), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/527 (79%), Positives = 465/527 (88%), Gaps = 5/527 (0%)
Query: 3 MAQAVSLPRILVSTDASKALSK--QAASTRKPRTSISTKKRAKVSPSRRTQNLNLEVSPH 60
MAQ +S + +DA + SK + A TR P T+I T+ + RT +NLE+SPH
Sbjct: 1 MAQVLSFGLRIRCSDARRTSSKPLKVAKTR-PNTAIPTRSTGTRRNANRTYGVNLEISPH 59
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
RAVSAVRLMRI+ GGAFADLLN++GKGSGDNEMGYVERTLGFRT+DLDDRDLRLVTDIVG
Sbjct: 60 RAVSAVRLMRIELGGAFADLLNERGKGSGDNEMGYVERTLGFRTRDLDDRDLRLVTDIVG 119
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVRLAK 180
G+IRWRRYLDHLI LCHD KTF SMEPLLLQILRIGFYEIV LDMPPYAVVDENVRLAK
Sbjct: 120 GSIRWRRYLDHLIVSLCHDSKTFRSMEPLLLQILRIGFYEIVNLDMPPYAVVDENVRLAK 179
Query: 181 VALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKY 240
VALRPGAGN+VN ILRKLVLLK+ NSLPLPKLEG+DRAQARALAT+YSHPVWMVRRWTKY
Sbjct: 180 VALRPGAGNMVNAILRKLVLLKEKNSLPLPKLEGDDRAQARALATLYSHPVWMVRRWTKY 239
Query: 241 LGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRVK 300
LGQEEAIKLM+WNNS+PSFSLRANS KG TRADLVM+L +LK VPHELS HLD F+R++
Sbjct: 240 LGQEEAIKLMMWNNSEPSFSLRANSGKGFTRADLVMRLKMLK--VPHELSPHLDNFVRIR 297
Query: 301 TGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQ 360
TG+Q VIQA LLKEGLC+VQDESAGLVV+VVDPQPG+SI+DCCAAPGGKT++MASCLSGQ
Sbjct: 298 TGMQIVIQAQLLKEGLCSVQDESAGLVVSVVDPQPGESIIDCCAAPGGKTIFMASCLSGQ 357
Query: 361 GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLG 420
G+V+AIDINKGRLRI+ ETAKL V+ VI T+HADL TFA N+ VK DKVLLDAPCSGLG
Sbjct: 358 GMVHAIDINKGRLRIVKETAKLLLVDDVITTVHADLCTFAKNNPVKSDKVLLDAPCSGLG 417
Query: 421 VLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAF 480
VLSKRADLRWNR LEDME+LK LQDELLDAA++LVKPGGVLVYSTCSIDPEENEERV AF
Sbjct: 418 VLSKRADLRWNRSLEDMEQLKNLQDELLDAAAILVKPGGVLVYSTCSIDPEENEERVAAF 477
Query: 481 LLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLVRA 527
L RHPEFSIDP VPSDFVT+ GF+FS+P+KH+LDGAFAARLVR+
Sbjct: 478 LQRHPEFSIDPVGRYVPSDFVTEGGFYFSNPVKHALDGAFAARLVRS 524
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|22331043|ref|NP_187924.2| ribosomal RNA small subunit methyltransferase B [Arabidopsis thaliana] gi|18176252|gb|AAL60011.1| putative sun protein fmu [Arabidopsis thaliana] gi|21436219|gb|AAM51397.1| putative sun protein fmu [Arabidopsis thaliana] gi|110740623|dbj|BAE98415.1| putative sun (fmu) protein [Arabidopsis thaliana] gi|332641785|gb|AEE75306.1| ribosomal RNA small subunit methyltransferase B [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 805 bits (2079), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/526 (75%), Positives = 456/526 (86%), Gaps = 3/526 (0%)
Query: 3 MAQAVSLPRILVSTDASKALSKQAASTRKPRTSISTKKRAKVSPSRRTQNLNLEVSPHRA 62
MAQ +S R+ +S + KA T+K R S +R V+PSR++QNLNLEVSPHRA
Sbjct: 1 MAQLLSF-RVYLSAETQKASPGSFKRTQKTRKPFSPDRRGPVAPSRKSQNLNLEVSPHRA 59
Query: 63 VSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGT 122
VSAVRLMRI++GGAFADLLN+KGKGSG NEM YVERT+GFRT+DLDDRDLRLVTD+VGGT
Sbjct: 60 VSAVRLMRIEYGGAFADLLNEKGKGSGSNEMSYVERTIGFRTRDLDDRDLRLVTDVVGGT 119
Query: 123 IRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVRLAKVA 182
IRWRRYLDHLI LCH+E+TF +MEPLLLQILRIG YEI+K DMPPYAVVDENVRLAKVA
Sbjct: 120 IRWRRYLDHLIGSLCHNERTFRNMEPLLLQILRIGVYEIIKRDMPPYAVVDENVRLAKVA 179
Query: 183 LRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLG 242
LRPGAG+ VNGILRKLV LK+ ++LPLPK+EG+DRAQARALAT++SHPVWMVRRW KYLG
Sbjct: 180 LRPGAGDFVNGILRKLVSLKEKDALPLPKVEGDDRAQARALATLHSHPVWMVRRWVKYLG 239
Query: 243 QEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTG 302
+EA KLM+WNN+DP FSLRAN+ + +TRADLV +LN LK VPHELSLHL+EF+R+KTG
Sbjct: 240 LDEATKLMIWNNNDPGFSLRANTGRDITRADLVERLNSLK--VPHELSLHLEEFVRIKTG 297
Query: 303 LQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGL 362
LQ V+QAGLLKEG+C+VQDESAGL+V+VV PQPG+ I+D CAAPGGKTL+MASCL GQG+
Sbjct: 298 LQTVVQAGLLKEGICSVQDESAGLIVSVVKPQPGERIMDACAAPGGKTLFMASCLKGQGM 357
Query: 363 VYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVL 422
+YA+D+N+GRLRIL ETAK HQV+ +I TIH+DLR FA+ + V+ DKVLLDAPCSGLGVL
Sbjct: 358 IYAMDVNEGRLRILGETAKSHQVDGLITTIHSDLRVFAETNEVQYDKVLLDAPCSGLGVL 417
Query: 423 SKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLL 482
SKRADLRWNR+LEDM EL LQDELLD+AS LVK GGVLVYSTCSIDPEENE RVEAFLL
Sbjct: 418 SKRADLRWNRKLEDMLELTKLQDELLDSASKLVKHGGVLVYSTCSIDPEENEGRVEAFLL 477
Query: 483 RHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLVRAF 528
RHPEF+IDP VPS FVT GFF S+P+KHSLDGAFAARLVRA
Sbjct: 478 RHPEFTIDPVTSFVPSSFVTSQGFFLSNPVKHSLDGAFAARLVRAL 523
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356501644|ref|XP_003519634.1| PREDICTED: ribosomal RNA small subunit methyltransferase B-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 803 bits (2074), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/499 (78%), Positives = 438/499 (87%), Gaps = 5/499 (1%)
Query: 30 RKPRTSISTKKRAKVSPSR--RTQNLNLEVSPHRAVSAVRLMRIQFGGAFADLLNKKGKG 87
R T+IS AK +R +TQ LN EVSPHRAVSAVRLMRI+ GGAFADLLN+KGKG
Sbjct: 31 RTCSTNISIPSTAKGGGNRLLKTQKLNSEVSPHRAVSAVRLMRIELGGAFADLLNEKGKG 90
Query: 88 SGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSME 147
SG+NEMGYV+RTLGFRT++L+ DLRLVTDIVGGTIRWRRYLDHLI LCHD K SSME
Sbjct: 91 SGENEMGYVQRTLGFRTRELNHHDLRLVTDIVGGTIRWRRYLDHLISSLCHD-KDISSME 149
Query: 148 PLLLQILRIGFYEIVKLDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSL 207
PLLLQILRIGFYEIVKLDMPPYAVVDENV+LAK ALRPGAGN+VNGILRKLV+LK+ SL
Sbjct: 150 PLLLQILRIGFYEIVKLDMPPYAVVDENVKLAKFALRPGAGNMVNGILRKLVVLKEKESL 209
Query: 208 PLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRK 267
PLPK+EG+DRAQARALAT+YSHPVWMVRRWTKYLGQEEAIKLM+WNNS+PSFSLRAN +
Sbjct: 210 PLPKVEGDDRAQARALATLYSHPVWMVRRWTKYLGQEEAIKLMIWNNSEPSFSLRANRAR 269
Query: 268 GVTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLV 327
G +R DLV QLN LK VPH+LS HLDEF+R+KTGLQ +IQAGLLK+GLC+VQDESAGLV
Sbjct: 270 GFSRDDLVTQLNALK--VPHKLSPHLDEFVRIKTGLQIIIQAGLLKKGLCSVQDESAGLV 327
Query: 328 VAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS 387
V+VVDPQPG++I+DCCAAPGGKTLYMAS LSGQG V+AID+N GRLRIL ETAKLHQV+
Sbjct: 328 VSVVDPQPGETIIDCCAAPGGKTLYMASHLSGQGKVFAIDVNSGRLRILKETAKLHQVDG 387
Query: 388 VIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDEL 447
VI IHADLRT D+ +K +KVLLDAPCSGLGVLSKRADLRWN+ LEDME+LK LQDEL
Sbjct: 388 VITAIHADLRTLPDSGQLKSNKVLLDAPCSGLGVLSKRADLRWNKNLEDMEQLKELQDEL 447
Query: 448 LDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFF 507
LDAAS LVKPGGVLVYSTCSIDPEEN++RV AFL RH +F IDP D VP DF T GFF
Sbjct: 448 LDAASKLVKPGGVLVYSTCSIDPEENDDRVVAFLARHSDFHIDPVDRYVPPDFETSSGFF 507
Query: 508 FSDPIKHSLDGAFAARLVR 526
FS+P+KHSLDG+FAARLVR
Sbjct: 508 FSNPVKHSLDGSFAARLVR 526
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|10172606|dbj|BAB01410.1| unnamed protein product [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 798 bits (2061), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/534 (73%), Positives = 456/534 (85%), Gaps = 11/534 (2%)
Query: 3 MAQAVSLPRILVSTDASKALSKQAASTRKPRTSISTKKRAKVSPSRRTQNLNLEVSPHRA 62
MAQ +S R+ +S + KA T+K R S +R V+PSR++QNLNLEVSPHRA
Sbjct: 1 MAQLLSF-RVYLSAETQKASPGSFKRTQKTRKPFSPDRRGPVAPSRKSQNLNLEVSPHRA 59
Query: 63 V--------SAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRL 114
V SAVRLMRI++GGAFADLLN+KGKGSG NEM YVERT+GFRT+DLDDRDLRL
Sbjct: 60 VFVCGAYTVSAVRLMRIEYGGAFADLLNEKGKGSGSNEMSYVERTIGFRTRDLDDRDLRL 119
Query: 115 VTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAVVDE 174
VTD+VGGTIRWRRYLDHLI LCH+E+TF +MEPLLLQILRIG YEI+K DMPPYAVVDE
Sbjct: 120 VTDVVGGTIRWRRYLDHLIGSLCHNERTFRNMEPLLLQILRIGVYEIIKRDMPPYAVVDE 179
Query: 175 NVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMV 234
NVRLAKVALRPGAG+ VNGILRKLV LK+ ++LPLPK+EG+DRAQARALAT++SHPVWMV
Sbjct: 180 NVRLAKVALRPGAGDFVNGILRKLVSLKEKDALPLPKVEGDDRAQARALATLHSHPVWMV 239
Query: 235 RRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLD 294
RRW KYLG +EA KLM+WNN+DP FSLRAN+ + +TRADLV +LN LK VPHELSLHL+
Sbjct: 240 RRWVKYLGLDEATKLMIWNNNDPGFSLRANTGRDITRADLVERLNSLK--VPHELSLHLE 297
Query: 295 EFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMA 354
EF+R+KTGLQ V+QAGLLKEG+C+VQDESAGL+V+VV PQPG+ I+D CAAPGGKTL+MA
Sbjct: 298 EFVRIKTGLQTVVQAGLLKEGICSVQDESAGLIVSVVKPQPGERIMDACAAPGGKTLFMA 357
Query: 355 SCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDA 414
SCL GQG++YA+D+N+GRLRIL ETAK HQV+ +I TIH+DLR FA+ + V+ DKVLLDA
Sbjct: 358 SCLKGQGMIYAMDVNEGRLRILGETAKSHQVDGLITTIHSDLRVFAETNEVQYDKVLLDA 417
Query: 415 PCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENE 474
PCSGLGVLSKRADLRWNR+LEDM EL LQDELLD+AS LVK GGVLVYSTCSIDPEENE
Sbjct: 418 PCSGLGVLSKRADLRWNRKLEDMLELTKLQDELLDSASKLVKHGGVLVYSTCSIDPEENE 477
Query: 475 ERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLVRAF 528
RVEAFLLRHPEF+IDP VPS FVT GFF S+P+KHSLDGAFAARLVRA
Sbjct: 478 GRVEAFLLRHPEFTIDPVTSFVPSSFVTSQGFFLSNPVKHSLDGAFAARLVRAL 531
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357495101|ref|XP_003617839.1| Ribosomal RNA small subunit methyltransferase [Medicago truncatula] gi|355519174|gb|AET00798.1| Ribosomal RNA small subunit methyltransferase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 794 bits (2051), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/489 (76%), Positives = 434/489 (88%), Gaps = 3/489 (0%)
Query: 36 ISTKKRAKVSPSRRTQNLNLEVSPHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGY 95
+S+ + S + Q LN ++SPHRAVSAVRLMRI+ GGAFADLLN+KGKGSG+NEMGY
Sbjct: 40 LSSTNNGSANRSVKPQKLNSDISPHRAVSAVRLMRIELGGAFADLLNEKGKGSGENEMGY 99
Query: 96 VERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILR 155
V+RTLGFRT++L+++DLRLVT+IVGGTIRWRRYLDHLI LCHD K SSMEPLLLQILR
Sbjct: 100 VQRTLGFRTRELNNQDLRLVTEIVGGTIRWRRYLDHLISSLCHD-KDISSMEPLLLQILR 158
Query: 156 IGFYEIVKLDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGN 215
IGFYEIVKLDMPPYAVVDENV+LAK ALRPGAGN+VNG+LRKLV+LK+N +LPLPK+EG+
Sbjct: 159 IGFYEIVKLDMPPYAVVDENVQLAKAALRPGAGNMVNGVLRKLVVLKENETLPLPKVEGD 218
Query: 216 DRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLV 275
DR+QARALAT+YSHPVW+VRRWTKYLGQEEAIKLM+WNN +PS+SLRAN KG +R DLV
Sbjct: 219 DRSQARALATLYSHPVWIVRRWTKYLGQEEAIKLMIWNNIEPSYSLRANRAKGFSRDDLV 278
Query: 276 MQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQP 335
+LN LK VPH+LSLHLD+F+R+KTGLQ +I AGL KEGLC+VQDESAGL+V++VDPQP
Sbjct: 279 TELNALK--VPHKLSLHLDDFVRIKTGLQIIIHAGLFKEGLCSVQDESAGLIVSIVDPQP 336
Query: 336 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHAD 395
G++IVDCCAAPGGKTLYMA+ LSGQG+VYA+D+N GRLRIL ETAKLHQV+ V+ T+HAD
Sbjct: 337 GETIVDCCAAPGGKTLYMAAHLSGQGMVYAVDVNSGRLRILKETAKLHQVDGVVTTVHAD 396
Query: 396 LRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLV 455
LRT D +K +KVLLDAPCSGLGVLSKRADLRWNR+LEDME+LK LQDELLDAAS LV
Sbjct: 397 LRTLTDGEPLKSNKVLLDAPCSGLGVLSKRADLRWNRKLEDMEQLKKLQDELLDAASTLV 456
Query: 456 KPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHS 515
KPGGVLVYSTCSIDPEEN++RV AFL RH +F IDP D VP DFVT GF+ S+P+KHS
Sbjct: 457 KPGGVLVYSTCSIDPEENDDRVAAFLERHADFHIDPVDRYVPPDFVTPKGFYSSNPVKHS 516
Query: 516 LDGAFAARL 524
LDG+FAARL
Sbjct: 517 LDGSFAARL 525
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297834138|ref|XP_002884951.1| NOL1/NOP2/sun family protein [Arabidopsis lyrata subsp. lyrata] gi|297330791|gb|EFH61210.1| NOL1/NOP2/sun family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 786 bits (2029), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 390/528 (73%), Positives = 448/528 (84%), Gaps = 5/528 (0%)
Query: 3 MAQAVSLPRILVSTDASKALSKQAASTRKPRTSISTKKRAKVSPSRRTQNLNLEVSPHRA 62
MAQ +S R+ +S + KA T K R S +R +PSR+ QNLNLEVSPHRA
Sbjct: 1 MAQLLSF-RVYLSAETQKASPGSFKRTPKTRKPFSQDRRGPGAPSRKPQNLNLEVSPHRA 59
Query: 63 VSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVT--DIVG 120
VSAVRLMRI++GGAFADLLN+KGKGSG NEM YVERT+GFRT+DLDDRDLRLV+ D+VG
Sbjct: 60 VSAVRLMRIEYGGAFADLLNEKGKGSGSNEMSYVERTIGFRTRDLDDRDLRLVSVADVVG 119
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVRLAK 180
GTIRWRRYLDHLI LCH+E+TF +MEPLLLQILRIG YEI+K DMPPYAVVDENVRLAK
Sbjct: 120 GTIRWRRYLDHLIGSLCHNERTFRNMEPLLLQILRIGVYEIIKRDMPPYAVVDENVRLAK 179
Query: 181 VALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKY 240
VALRPGAG+ VNGILRKLV LK+ ++LPLPK+EG+DRAQARALAT++SHPVWMVRRW KY
Sbjct: 180 VALRPGAGDFVNGILRKLVSLKEKDALPLPKVEGDDRAQARALATLHSHPVWMVRRWVKY 239
Query: 241 LGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRVK 300
LG EEA LM WNN+DP FSLRAN+ +G+ R+DLV +LN LK VPHELSLHL+EF+R+K
Sbjct: 240 LGLEEATTLMTWNNNDPGFSLRANTGRGIARSDLVERLNSLK--VPHELSLHLEEFVRIK 297
Query: 301 TGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQ 360
TGLQ V+QAGLLKEG+C+VQDESAGL+V+VV PQPG+ I+D CAAPGGKTL+MASCL GQ
Sbjct: 298 TGLQTVVQAGLLKEGICSVQDESAGLIVSVVKPQPGERIMDACAAPGGKTLFMASCLKGQ 357
Query: 361 GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLG 420
G++YA+D+N+GRLRIL ETAK HQV+ +I TIH+DLR FA S V+ DKVLLDAPCSGLG
Sbjct: 358 GMIYAMDVNEGRLRILGETAKSHQVDGLITTIHSDLRVFAVTSEVQYDKVLLDAPCSGLG 417
Query: 421 VLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAF 480
VLSKRADLRWNR+LEDM EL LQD+LLD+AS LVK GGVL+YSTCSIDPEENE RVEAF
Sbjct: 418 VLSKRADLRWNRKLEDMVELTELQDDLLDSASKLVKHGGVLIYSTCSIDPEENEGRVEAF 477
Query: 481 LLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLVRAF 528
L RHP FSIDP VPS FVT GFF S+P+KHSLDGAFAARLVRA
Sbjct: 478 LERHPVFSIDPVTSFVPSSFVTSQGFFLSNPVKHSLDGAFAARLVRAL 525
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|115479747|ref|NP_001063467.1| Os09g0477900 [Oryza sativa Japonica Group] gi|52077347|dbj|BAD46388.1| sunL protein-like [Oryza sativa Japonica Group] gi|113631700|dbj|BAF25381.1| Os09g0477900 [Oryza sativa Japonica Group] gi|222641777|gb|EEE69909.1| hypothetical protein OsJ_29754 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 715 bits (1846), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/515 (67%), Positives = 424/515 (82%), Gaps = 13/515 (2%)
Query: 17 DASKALSKQAASTRKPRTS--ISTKK--RAKVSPSRRTQNLNLEVSPHRAVSAVRLMRIQ 72
D+ +A +++ TR P S + T++ R KVS N+NLEVS HRAV+AVRL+RI+
Sbjct: 63 DSPEAPPRRSGITRVPNRSPEMPTERAGRTKVS------NVNLEVSHHRAVAAVRLLRIE 116
Query: 73 FGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHL 132
G AF DLLN+KG SG+NEM YVERTLGF + LD+RD+RLVT IV GT+RW+RYLD+L
Sbjct: 117 KGKAFVDLLNEKGNSSGENEMSYVERTLGFSIRCLDNRDIRLVTVIVAGTVRWKRYLDYL 176
Query: 133 ICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVRLAKVALRPGAGNLVN 192
I LC +EK F MEPLLLQILRIGF+EI+KL++P YA VDENVRLAKVALRPGAGNLVN
Sbjct: 177 IMSLCSEEKVFREMEPLLLQILRIGFFEILKLNVPAYAAVDENVRLAKVALRPGAGNLVN 236
Query: 193 GILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVW 252
ILRKL+LLK+ NSLPLPK+EG+DRAQARAL+ IYSHPVWMVRRW ++LG+EEA+KLM W
Sbjct: 237 AILRKLLLLKEANSLPLPKIEGDDRAQARALSIIYSHPVWMVRRWIRFLGKEEALKLMKW 296
Query: 253 NNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLL 312
NNSDP FS+R N+ G TRADL+ +L LQV +E S +DEF+R++ G+Q V+QAGLL
Sbjct: 297 NNSDPHFSIRVNTANGYTRADLIDRLE--SLQVHYEKST-MDEFVRIQEGMQTVLQAGLL 353
Query: 313 KEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGR 372
KEG+CAVQDESAGLVV+VVDPQPG++I+DCCAAPGGKTL+MA+ LSGQG ++A+DINKGR
Sbjct: 354 KEGMCAVQDESAGLVVSVVDPQPGETIIDCCAAPGGKTLFMAARLSGQGKIWALDINKGR 413
Query: 373 LRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNR 432
LRIL E AKLH ++++I IHADLR +A +T DKVLLDAPCSGLGVLSKRADLRWNR
Sbjct: 414 LRILMEAAKLHNLDAMISDIHADLRLYAKETTATFDKVLLDAPCSGLGVLSKRADLRWNR 473
Query: 433 RLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPA 492
+ ED+EEL LQDELLD+AS+LVKPGG+LVYSTCSIDPEENE R+ AF+ RHP+F +
Sbjct: 474 QFEDLEELMCLQDELLDSASMLVKPGGILVYSTCSIDPEENEHRIAAFVQRHPDFVLQSV 533
Query: 493 DGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLVRA 527
G VP++FVT GF+ S P KHS+DGAFAARLVR+
Sbjct: 534 HGYVPAEFVTDEGFYSSSPTKHSIDGAFAARLVRS 568
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|218202330|gb|EEC84757.1| hypothetical protein OsI_31764 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
|---|
Score = 715 bits (1845), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/515 (67%), Positives = 424/515 (82%), Gaps = 13/515 (2%)
Query: 17 DASKALSKQAASTRKPRTS--ISTKK--RAKVSPSRRTQNLNLEVSPHRAVSAVRLMRIQ 72
D+ +A +++ TR P S + T++ R KVS N+NLEVS HRAV+AVRL+RI+
Sbjct: 63 DSPEAPPRRSGITRVPNHSPEMPTERAGRTKVS------NVNLEVSHHRAVAAVRLLRIE 116
Query: 73 FGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHL 132
G AF DLLN+KG SG+NEM YVERTLGF + LD+RD+RLVT IV GT+RW+RYLD+L
Sbjct: 117 KGKAFVDLLNEKGNSSGENEMSYVERTLGFSIRCLDNRDIRLVTVIVAGTVRWKRYLDYL 176
Query: 133 ICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVRLAKVALRPGAGNLVN 192
I LC +EK F MEPLLLQILRIGF+EI+KL++P YA VDENVRLAKVALRPGAGNLVN
Sbjct: 177 IMSLCSEEKVFREMEPLLLQILRIGFFEILKLNVPAYAAVDENVRLAKVALRPGAGNLVN 236
Query: 193 GILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVW 252
ILRKL+LLK+ NSLPLPK+EG+DRAQARAL+ IYSHPVWMVRRW ++LG+EEA+KLM W
Sbjct: 237 AILRKLLLLKEANSLPLPKIEGDDRAQARALSIIYSHPVWMVRRWIRFLGKEEALKLMKW 296
Query: 253 NNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLL 312
NNSDP FS+R N+ G TRADL+ +L LQV +E S +DEF+R++ G+Q V+QAGLL
Sbjct: 297 NNSDPHFSIRVNTANGYTRADLIDRLE--SLQVHYEKST-MDEFVRIQEGMQTVLQAGLL 353
Query: 313 KEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGR 372
KEG+CAVQDESAGLVV+VVDPQPG++I+DCCAAPGGKTL+MA+ LSGQG ++A+DINKGR
Sbjct: 354 KEGMCAVQDESAGLVVSVVDPQPGETIIDCCAAPGGKTLFMAARLSGQGKIWALDINKGR 413
Query: 373 LRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNR 432
LRIL E AKLH ++++I IHADLR +A +T DKVLLDAPCSGLGVLSKRADLRWNR
Sbjct: 414 LRILMEAAKLHNLDAMISDIHADLRLYAKETTATFDKVLLDAPCSGLGVLSKRADLRWNR 473
Query: 433 RLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPA 492
+ ED+EEL LQDELLD+AS+LVKPGG+LVYSTCSIDPEENE R+ AF+ RHP+F +
Sbjct: 474 QFEDLEELMCLQDELLDSASMLVKPGGILVYSTCSIDPEENEHRIAAFVQRHPDFVLQSV 533
Query: 493 DGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLVRA 527
G VP++FVT GF+ S P KHS+DGAFAARLVR+
Sbjct: 534 HGYVPAEFVTDEGFYSSSPTKHSIDGAFAARLVRS 568
|
Source: Oryza sativa Indica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 528 | ||||||
| TAIR|locus:2090054 | 523 | AT3G13180 [Arabidopsis thalian | 0.988 | 0.998 | 0.735 | 9.5e-208 | |
| TIGR_CMR|GSU_3373 | 448 | GSU_3373 "Sun protein" [Geobac | 0.755 | 0.890 | 0.355 | 1.3e-54 | |
| TIGR_CMR|CHY_1481 | 440 | CHY_1481 "sun protein" [Carbox | 0.674 | 0.809 | 0.340 | 1.6e-54 | |
| UNIPROTKB|Q81WH3 | 444 | sun "Sun protein" [Bacillus an | 0.676 | 0.804 | 0.343 | 1.1e-48 | |
| TIGR_CMR|BA_4003 | 444 | BA_4003 "sun protein" [Bacillu | 0.676 | 0.804 | 0.343 | 1.1e-48 | |
| TIGR_CMR|CPS_0018 | 440 | CPS_0018 "sun protein" [Colwel | 0.746 | 0.895 | 0.282 | 1.1e-39 | |
| TIGR_CMR|CBU_1915 | 430 | CBU_1915 "Sun protein" [Coxiel | 0.683 | 0.839 | 0.277 | 1.3e-34 | |
| UNIPROTKB|Q9KVU5 | 434 | rsmB "Ribosomal RNA small subu | 0.539 | 0.656 | 0.355 | 2.2e-34 | |
| TIGR_CMR|VC_0044 | 434 | VC_0044 "sun protein" [Vibrio | 0.539 | 0.656 | 0.355 | 2.2e-34 | |
| TIGR_CMR|SO_0030 | 428 | SO_0030 "sun protein" [Shewane | 0.541 | 0.668 | 0.325 | 1.2e-33 |
| TAIR|locus:2090054 AT3G13180 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2009 (712.3 bits), Expect = 9.5e-208, P = 9.5e-208
Identities = 386/525 (73%), Positives = 447/525 (85%)
Query: 3 MAQAVSLPRILVSTDASKALSKQAASTRKPRTSISTKKRAKVSPSRRTQNLNLEVSPHRA 62
MAQ +S R+ +S + KA T+K R S +R V+PSR++QNLNLEVSPHRA
Sbjct: 1 MAQLLSF-RVYLSAETQKASPGSFKRTQKTRKPFSPDRRGPVAPSRKSQNLNLEVSPHRA 59
Query: 63 VSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKXXXXXXXXXVTDIVGGT 122
VSAVRLMRI++GGAFADLLN+KGKGSG NEM YVERT+GFRT+ VTD+VGGT
Sbjct: 60 VSAVRLMRIEYGGAFADLLNEKGKGSGSNEMSYVERTIGFRTRDLDDRDLRLVTDVVGGT 119
Query: 123 IRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVRLAKVA 182
IRWRRYLDHLI LCH+E+TF +MEPLLLQILRIG YEI+K DMPPYAVVDENVRLAKVA
Sbjct: 120 IRWRRYLDHLIGSLCHNERTFRNMEPLLLQILRIGVYEIIKRDMPPYAVVDENVRLAKVA 179
Query: 183 LRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLG 242
LRPGAG+ VNGILRKLV LK+ ++LPLPK+EG+DRAQARALAT++SHPVWMVRRW KYLG
Sbjct: 180 LRPGAGDFVNGILRKLVSLKEKDALPLPKVEGDDRAQARALATLHSHPVWMVRRWVKYLG 239
Query: 243 QEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTG 302
+EA KLM+WNN+DP FSLRAN+ + +TRADLV +LN LK VPHELSLHL+EF+R+KTG
Sbjct: 240 LDEATKLMIWNNNDPGFSLRANTGRDITRADLVERLNSLK--VPHELSLHLEEFVRIKTG 297
Query: 303 LQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGL 362
LQ V+QAGLLKEG+C+VQDESAGL+V+VV PQPG+ I+D CAAPGGKTL+MASCL GQG+
Sbjct: 298 LQTVVQAGLLKEGICSVQDESAGLIVSVVKPQPGERIMDACAAPGGKTLFMASCLKGQGM 357
Query: 363 VYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVL 422
+YA+D+N+GRLRIL ETAK HQV+ +I TIH+DLR FA+ + V+ DKVLLDAPCSGLGVL
Sbjct: 358 IYAMDVNEGRLRILGETAKSHQVDGLITTIHSDLRVFAETNEVQYDKVLLDAPCSGLGVL 417
Query: 423 SKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLL 482
SKRADLRWNR+LEDM EL LQDELLD+AS LVK GGVLVYSTCSIDPEENE RVEAFLL
Sbjct: 418 SKRADLRWNRKLEDMLELTKLQDELLDSASKLVKHGGVLVYSTCSIDPEENEGRVEAFLL 477
Query: 483 RHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLVRA 527
RHPEF+IDP VPS FVT GFF S+P+KHSLDGAFAARLVRA
Sbjct: 478 RHPEFTIDPVTSFVPSSFVTSQGFFLSNPVKHSLDGAFAARLVRA 522
|
|
| TIGR_CMR|GSU_3373 GSU_3373 "Sun protein" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 564 (203.6 bits), Expect = 1.3e-54, P = 1.3e-54
Identities = 148/416 (35%), Positives = 228/416 (54%)
Query: 115 VTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVD 173
+T++V G +R LD+L+ L C + +E +L +LR+G Y+I LD +P A V+
Sbjct: 47 LTELVYGVLRRTATLDYLVDLFCATRA--AKLERSVLILLRLGLYQIFFLDRIPVSAAVN 104
Query: 174 ENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWM 233
E V LA+ P A LVN +LR+ ++ +S+ P R A LA +SHP W+
Sbjct: 105 ETVTLAREK-SPRASGLVNAVLRRSD--RERSSIAWPD---RVRDPAGYLALRHSHPRWI 158
Query: 234 VRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHL 293
V W LG EEA L + P +LR N+ + T + ++L L + E + H
Sbjct: 159 VEGWIAQLGFEEAEALAEVMAAPPPLTLRVNTLR--TSREAYLEL-LREAGTEAEPTRHS 215
Query: 294 DEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYM 353
IR+ + G EGL VQDES+ L +++P+ G+ ++D CA+PGGK ++
Sbjct: 216 PHGIRILSRTAVPALPGF-GEGLVIVQDESSQLASLLLEPRSGERVLDACASPGGKATHL 274
Query: 354 ASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLD 413
A ++ +G V A D+++ +L + E A+ + +IR AD R N+ D++L+D
Sbjct: 275 AQIMADKGEVIAWDVSEKKLSPIAENARRLGIG-IIRPAMADARNPEQNAA-PFDRILVD 332
Query: 414 APCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEEN 473
APCS LGVL + + +W + +D+ L Q +L A+ L+KPGG L+YSTCS +EN
Sbjct: 333 APCSALGVLRRTPEGKWWKTPDDVARLAQSQCRILAGAASLLKPGGTLLYSTCSTTTDEN 392
Query: 474 EERVEAFLLRHPEFSIDPADGLVP--SDFVTKHGFFFSDPIKHSLDGAFAARLVRA 527
E +E FL R +F ++ + L P S+ +T G F S P +H +DG FAARL RA
Sbjct: 393 ESIIEDFLSRRADFMLEDLNYLFPGLSECITDRGMFRSWPHRHGMDGFFAARLRRA 448
|
|
| TIGR_CMR|CHY_1481 CHY_1481 "sun protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 563 (203.2 bits), Expect = 1.6e-54, P = 1.6e-54
Identities = 128/376 (34%), Positives = 213/376 (56%)
Query: 115 VTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVD 173
V ++ G ++ + LD++ L K S + P ++ +R+G Y++ LD +P YA ++
Sbjct: 41 VVELTYGVLKQLKLLDYMAGKLL---KKRSKLPPFVINAIRVGLYQLYFLDKVPTYAAIN 97
Query: 174 ENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWM 233
E V K R G +VNG+LR + ++ + K++ +D + A+A YSHP WM
Sbjct: 98 ETVEAVKRNYR-GFTGVVNGVLRNFIRRREE----ITKIDVSDEVEYLAIA--YSHPEWM 150
Query: 234 VRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRA--DLVMQLNLLKLQVPHELSL 291
V+RW G + ++++ +NN P+ +LR N+ K +A DL+ + N+ Q+P+ L
Sbjct: 151 VKRWLNQYGYTKTVEILKYNNHQPNLTLRINTLKISPKAYCDLLNEKNINFKQLPY---L 207
Query: 292 HLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTL 351
I K G++ + G EGL +QD + + +++P+P +D CAAPGGK+
Sbjct: 208 PEGVVILDKVGVKEL--PGY-DEGLFYIQDTGSMFIAYLINPEPNSVGIDACAAPGGKST 264
Query: 352 YMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVL 411
++A + +G++YA D++ GRL+++ E A +N +IR + D V + +L
Sbjct: 265 HLAQLMGNKGIIYAFDVHPGRLKLIEENAHRLGIN-IIRCLLGDATRLKLPDGVNPNWIL 323
Query: 412 LDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPE 471
D PCSG GVL+++ D RW + E++ +L Q E+L S L+ P G+LVYSTCSI+PE
Sbjct: 324 ADVPCSGTGVLARKPDARWQKSEEEIIKLSQYQLEILTNLSKLLPPEGILVYSTCSIEPE 383
Query: 472 ENEERVEAFLLRHPEF 487
ENE VE FL ++P F
Sbjct: 384 ENEGVVENFLRKNPNF 399
|
|
| UNIPROTKB|Q81WH3 sun "Sun protein" [Bacillus anthracis (taxid:1392)] | Back alignment and assigned GO terms |
|---|
Score = 508 (183.9 bits), Expect = 1.1e-48, P = 1.1e-48
Identities = 130/379 (34%), Positives = 208/379 (54%)
Query: 115 VTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVD 173
+T+IV GTI+ R LD+ + + +E + +LR+ Y+++ LD +P A +
Sbjct: 44 LTEIVYGTIQRRDTLDYYLQPFLKKK-----VEAWVRVLLRLSLYQMIYLDRVPERAAIH 98
Query: 174 ENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWM 233
E V +AK G +VNG+LR + +P E D + A+AT SHPVW+
Sbjct: 99 EAVEIAKRRGHKGIAGMVNGVLRSI----QREGVPSVD-EIKDPVERLAIAT--SHPVWL 151
Query: 234 VRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPH-ELSLH 292
V+ WT G E A K+ N P + R N K +T + + L ++ +LS
Sbjct: 152 VQEWTAEYGLETAEKMCEVNMLPPVPTARVNVDK-ITVEEAITLLASEGIEAKRGDLS-- 208
Query: 293 LDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLY 352
D+ I+++ G NV K+G ++QDES+ LV ++P G I+D CAAPGGKT +
Sbjct: 209 -DDAIQIEKG--NVAHTDAFKKGFLSIQDESSMLVARALEPDEGDVILDSCAAPGGKTTH 265
Query: 353 MASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCDKVL 411
+A L G G V ++D++ ++R++ + A+ + +V T D R ++ + DK+L
Sbjct: 266 IAERLKGTGQVMSLDLHAHKVRLIKQQAERLGLENV-ETKALDARKVQEHFANETFDKIL 324
Query: 412 LDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPE 471
+DAPCSG GV+ ++ D++ + D E L ++Q +L+ + L+K GG LVYSTC+I+
Sbjct: 325 VDAPCSGFGVIRRKPDIKLGKDKGDSERLSMIQFAILEKIAPLLKQGGRLVYSTCTIEKI 384
Query: 472 ENEERVEAFLLRHPEFSID 490
ENE+ +E FL HPEF D
Sbjct: 385 ENEQVIERFLQEHPEFEWD 403
|
|
| TIGR_CMR|BA_4003 BA_4003 "sun protein" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 508 (183.9 bits), Expect = 1.1e-48, P = 1.1e-48
Identities = 130/379 (34%), Positives = 208/379 (54%)
Query: 115 VTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVD 173
+T+IV GTI+ R LD+ + + +E + +LR+ Y+++ LD +P A +
Sbjct: 44 LTEIVYGTIQRRDTLDYYLQPFLKKK-----VEAWVRVLLRLSLYQMIYLDRVPERAAIH 98
Query: 174 ENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWM 233
E V +AK G +VNG+LR + +P E D + A+AT SHPVW+
Sbjct: 99 EAVEIAKRRGHKGIAGMVNGVLRSI----QREGVPSVD-EIKDPVERLAIAT--SHPVWL 151
Query: 234 VRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPH-ELSLH 292
V+ WT G E A K+ N P + R N K +T + + L ++ +LS
Sbjct: 152 VQEWTAEYGLETAEKMCEVNMLPPVPTARVNVDK-ITVEEAITLLASEGIEAKRGDLS-- 208
Query: 293 LDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLY 352
D+ I+++ G NV K+G ++QDES+ LV ++P G I+D CAAPGGKT +
Sbjct: 209 -DDAIQIEKG--NVAHTDAFKKGFLSIQDESSMLVARALEPDEGDVILDSCAAPGGKTTH 265
Query: 353 MASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCDKVL 411
+A L G G V ++D++ ++R++ + A+ + +V T D R ++ + DK+L
Sbjct: 266 IAERLKGTGQVMSLDLHAHKVRLIKQQAERLGLENV-ETKALDARKVQEHFANETFDKIL 324
Query: 412 LDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPE 471
+DAPCSG GV+ ++ D++ + D E L ++Q +L+ + L+K GG LVYSTC+I+
Sbjct: 325 VDAPCSGFGVIRRKPDIKLGKDKGDSERLSMIQFAILEKIAPLLKQGGRLVYSTCTIEKI 384
Query: 472 ENEERVEAFLLRHPEFSID 490
ENE+ +E FL HPEF D
Sbjct: 385 ENEQVIERFLQEHPEFEWD 403
|
|
| TIGR_CMR|CPS_0018 CPS_0018 "sun protein" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 423 (154.0 bits), Expect = 1.1e-39, P = 1.1e-39
Identities = 116/411 (28%), Positives = 208/411 (50%)
Query: 117 DIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAVVDENV 176
+I G +R+ L++ + L +K + + +L +G Y+I + +P +A V E V
Sbjct: 44 EICYGVLRYLPELENDVSQLV--QKPIKGKQRVFHFLLLVGVYQIRYMRIPDHAAVSETV 101
Query: 177 RLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRR 236
K LVN +LR + + + + K D+ + Y+HP W +++
Sbjct: 102 AATKTLKNDHMKGLVNAVLRGFLRALEAENKQVNK---TDKKIPDPIK--YNHPGWFIKK 156
Query: 237 WTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDE 295
+ Y Q +AI + N P LR N + + + L ++++ H + + +
Sbjct: 157 IQQAYSDQWQAI--LDANQQKPPMWLRVNQQHHTSEQYQAL-LEEAEIEIAH-VEPN-SQ 211
Query: 296 FIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMAS 355
I + L +V + +G ++QD +A ++D QP ++DCCAAPGGKT ++
Sbjct: 212 AIELAKPL-DVAKLPGFDDGWVSIQDGAAQQAARLLDCQPNDIVLDCCAAPGGKTCHIIE 270
Query: 356 CLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAP 415
+ AIDI +GRL ++E L ++N I AD T S + D++LLDAP
Sbjct: 271 QTPDIASMTAIDIEEGRLTRVHEN--LDRLNLTANVITADAATQNWWSGEQFDRILLDAP 328
Query: 416 CSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEE 475
CSG GV+ + D++W R+ +D+++L +LQ ++LD L+KPGG L+Y+TCS+ PEEN
Sbjct: 329 CSGTGVIRRHPDIKWLRKADDIDKLVVLQQQILDNIWSLLKPGGTLLYATCSVLPEENSL 388
Query: 476 RVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLVR 526
++ F+ ++ + + +G P G+ P ++DG + A+L++
Sbjct: 389 QISRFIEQNQDAQLIAINGNTPETDKNAIGWQLL-PDAENMDGFYYAKLLK 438
|
|
| TIGR_CMR|CBU_1915 CBU_1915 "Sun protein" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
Identities = 106/382 (27%), Positives = 190/382 (49%)
Query: 115 VTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAVVDE 174
+ ++ GT+RW L + L H + + ++ GFY++ L++P + +V++
Sbjct: 35 IQELCYGTLRWYFKLKLIAEKLLH--APLRDKDHDIFCLILTGFYQLNYLNIPTHTIVNQ 92
Query: 175 NVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPK-LEGNDRAQARALATIYSHPVWM 233
V A++ +P A L+N +LR+ + KD K +EG Y+HP+W
Sbjct: 93 TVGAAEILKKPWAKGLINKLLRRFIAEKDELLTFTEKTIEGQ-----------YAHPLWF 141
Query: 234 VRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHL 293
++ K + +++ NN+ P +LR N K ++R + L+ + L L
Sbjct: 142 IQH-IKKAWPDHWESILIANNARPPMTLRVNLTK-ISREIYLEMLDQKNISAK-PLDF-L 197
Query: 294 DEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYM 353
I+++ +V Q EG C +QD + ++ + Q+++D CAAPG KT ++
Sbjct: 198 PAAIQLEKPC-SVHQLPGFNEGYCYIQDAAGQFAAYLLKLENNQTVLDACAAPGSKTSHI 256
Query: 354 ASCLSGQGLVYAIDINKGRL-RILNETAKLHQVNSVIRTIHADLRTFADNSTVKC-DKVL 411
+ AID NK RL RI +L ++ + AD+ S+ + D++L
Sbjct: 257 LEVNPHLKTLVAIDNNKQRLNRIKENITRLGLRQEHLQCLLADVSQIDQWSSGELFDRIL 316
Query: 412 LDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPE 471
LDAPCS GV+ + D++ R+ D+ + + +LL+A ++K GG L+YSTCS+ P+
Sbjct: 317 LDAPCSATGVIRRHPDIKLLRQPGDISQYHQKKLQLLNALWTVLKAGGFLLYSTCSVLPD 376
Query: 472 ENEERVEAFLLRHPEFSIDPAD 493
ENE+ +E FL H + + P +
Sbjct: 377 ENEKVIEEFLSTHDKVELSPTN 398
|
|
| UNIPROTKB|Q9KVU5 rsmB "Ribosomal RNA small subunit methyltransferase B" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
Identities = 109/307 (35%), Positives = 168/307 (54%)
Query: 213 EGNDRAQARAL-ATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTR 271
EG D AQA + A Y HP W+++ K E+ +++ NNS LR N + TR
Sbjct: 134 EGLD-AQATSHDAGRYGHPGWLLKL-LKESYPEQWQQIVEANNSKAPMWLRVNHQHH-TR 190
Query: 272 ADLVMQLNLLKL-QVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAV 330
A+ L + PH + ++ + ++T +V Q EG +VQD +A L +
Sbjct: 191 AEYQALLEQAGIVTTPHAQA---EDALCLETPC-DVHQLPGFAEGWVSVQDAAAQLALTY 246
Query: 331 VDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIR 390
+ PQ G+ I+DCCAAPGGKT ++ + + V AID ++ RL+ + E L ++ +
Sbjct: 247 LAPQAGELILDCCAAPGGKTAHILE-RTPESQVVAIDCDETRLKRVREN--LQRLELTAQ 303
Query: 391 TIHADLRTFADN--STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELL 448
I D R + + D++LLDAPCS GV+ + D++W RR +D+ L LQ E+L
Sbjct: 304 VICGDAR-YPQQWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQREIL 362
Query: 449 DAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSI---DPAD-G--LVPSDFVT 502
DA +KPGG LVY+TCSI P+EN +V+AFL R P+ + DPA G ++P +
Sbjct: 363 DAMWQQLKPGGSLVYATCSITPQENRLQVKAFLERTPDARLVGSDPAQPGRQILPGE-EA 421
Query: 503 KHGFFFS 509
GF+++
Sbjct: 422 MDGFYYA 428
|
|
| TIGR_CMR|VC_0044 VC_0044 "sun protein" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
Identities = 109/307 (35%), Positives = 168/307 (54%)
Query: 213 EGNDRAQARAL-ATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTR 271
EG D AQA + A Y HP W+++ K E+ +++ NNS LR N + TR
Sbjct: 134 EGLD-AQATSHDAGRYGHPGWLLKL-LKESYPEQWQQIVEANNSKAPMWLRVNHQHH-TR 190
Query: 272 ADLVMQLNLLKL-QVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAV 330
A+ L + PH + ++ + ++T +V Q EG +VQD +A L +
Sbjct: 191 AEYQALLEQAGIVTTPHAQA---EDALCLETPC-DVHQLPGFAEGWVSVQDAAAQLALTY 246
Query: 331 VDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIR 390
+ PQ G+ I+DCCAAPGGKT ++ + + V AID ++ RL+ + E L ++ +
Sbjct: 247 LAPQAGELILDCCAAPGGKTAHILE-RTPESQVVAIDCDETRLKRVREN--LQRLELTAQ 303
Query: 391 TIHADLRTFADN--STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELL 448
I D R + + D++LLDAPCS GV+ + D++W RR +D+ L LQ E+L
Sbjct: 304 VICGDAR-YPQQWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQREIL 362
Query: 449 DAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSI---DPAD-G--LVPSDFVT 502
DA +KPGG LVY+TCSI P+EN +V+AFL R P+ + DPA G ++P +
Sbjct: 363 DAMWQQLKPGGSLVYATCSITPQENRLQVKAFLERTPDARLVGSDPAQPGRQILPGE-EA 421
Query: 503 KHGFFFS 509
GF+++
Sbjct: 422 MDGFYYA 428
|
|
| TIGR_CMR|SO_0030 SO_0030 "sun protein" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
Identities = 99/304 (32%), Positives = 164/304 (53%)
Query: 227 YSHPVWMVRRW-TKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
Y+ P W+++R T Y G + I + ++ P LR N+R +R + + L+ L++
Sbjct: 138 YNTPGWLIKRLKTAYPGNWQEI--IQQSHERPPMWLR-NNRLSQSRDEYLAALDKLEIDA 194
Query: 286 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 345
LS D+ I + ++V L EG +VQD +A ++ PQ + I+D CAA
Sbjct: 195 SAGLS---DDAILLAAP-KDVATLPLFLEGAASVQDGAAQWAATLLAPQANELILDACAA 250
Query: 346 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN--S 403
PGGK+ ++ L+ A+D + RL + + L +++ IH D D+
Sbjct: 251 PGGKSCHLLELEPSIKLI-AVDFDAKRLERVQQN--LDRLSLKAEVIHGDAANI-DSWWQ 306
Query: 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463
+ D++LLDAPCS GV+ + D++W R+ D+EEL LQ ++LD +KPGG L+Y
Sbjct: 307 GEQFDRILLDAPCSATGVIRRHPDIKWLRKNHDIEELAELQRQILDHCWKWLKPGGTLLY 366
Query: 464 STCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAAR 523
+TCSI P+EN +++ AFL R + +D LV G+ + P +H++DG + AR
Sbjct: 367 ATCSILPQENRDQISAFLARTADAKLDT---LVQQASSQDIGWQIT-PGQHNMDGFYYAR 422
Query: 524 LVRA 527
L++A
Sbjct: 423 LLKA 426
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 528 | |||
| PRK14902 | 444 | PRK14902, PRK14902, 16S rRNA methyltransferase B; | 1e-122 | |
| PRK14904 | 445 | PRK14904, PRK14904, 16S rRNA methyltransferase B; | 1e-102 | |
| PRK14901 | 434 | PRK14901, PRK14901, 16S rRNA methyltransferase B; | 9e-99 | |
| COG0144 | 355 | COG0144, Sun, tRNA and rRNA cytosine-C5-methylases | 2e-88 | |
| TIGR00563 | 426 | TIGR00563, rsmB, ribosomal RNA small subunit methy | 3e-75 | |
| PRK10901 | 427 | PRK10901, PRK10901, 16S rRNA methyltransferase B; | 5e-65 | |
| PRK14903 | 431 | PRK14903, PRK14903, 16S rRNA methyltransferase B; | 2e-52 | |
| pfam01189 | 277 | pfam01189, Nol1_Nop2_Fmu, NOL1/NOP2/sun family | 9e-44 | |
| TIGR00446 | 264 | TIGR00446, nop2p, NOL1/NOP2/sun family putative RN | 6e-43 | |
| PRK11933 | 470 | PRK11933, yebU, rRNA (cytosine-C(5)-)-methyltransf | 6e-25 | |
| pfam01029 | 126 | pfam01029, NusB, NusB family | 8e-21 | |
| cd00620 | 126 | cd00620, Methyltransferase_Sun, N-terminal RNA bin | 1e-17 | |
| cd00447 | 129 | cd00447, NusB_Sun, RNA binding domain of NusB (N p | 3e-12 | |
| TIGR01951 | 129 | TIGR01951, nusB, transcription antitermination fac | 1e-10 | |
| pfam13659 | 117 | pfam13659, Methyltransf_26, Methyltransferase doma | 1e-08 | |
| cd02440 | 107 | cd02440, AdoMet_MTases, S-adenosylmethionine-depen | 6e-08 | |
| PRK00202 | 137 | PRK00202, nusB, transcription antitermination prot | 9e-08 | |
| COG0781 | 151 | COG0781, NusB, Transcription termination factor [T | 3e-07 | |
| cd00619 | 130 | cd00619, Terminator_NusB, Transcription terminatio | 2e-06 | |
| pfam02475 | 199 | pfam02475, Met_10, Met-10+ like-protein | 7e-05 | |
| COG1092 | 393 | COG1092, COG1092, Predicted SAM-dependent methyltr | 5e-04 | |
| pfam12847 | 104 | pfam12847, Methyltransf_18, Methyltransferase doma | 7e-04 | |
| pfam01728 | 177 | pfam01728, FtsJ, FtsJ-like methyltransferase | 0.001 | |
| COG2520 | 341 | COG2520, COG2520, Predicted methyltransferase [Gen | 0.001 | |
| TIGR02469 | 124 | TIGR02469, CbiT, precorrin-6Y C5,15-methyltransfer | 0.001 | |
| COG0293 | 205 | COG0293, FtsJ, 23S rRNA methylase [Translation, ri | 0.002 |
| >gnl|CDD|237857 PRK14902, PRK14902, 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Score = 364 bits (938), Expect = e-122
Identities = 163/470 (34%), Positives = 264/470 (56%), Gaps = 37/470 (7%)
Query: 61 RAVSAVRLMRIQFGGAFADL-LNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIV 119
R ++ L++++ GA++++ LNK + +L D+D L+T++V
Sbjct: 6 RELALEVLIKVENNGAYSNIALNKV-----------------LKKSELSDKDKALLTELV 48
Query: 120 GGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRL 178
GTI+ + LD+ L K ++P + +LR+ Y+++ LD +P +A V+E V +
Sbjct: 49 YGTIQRKLTLDYY---LAPFIKKRKKLDPWVRNLLRMSLYQLLYLDKVPDHAAVNEAVEI 105
Query: 179 AKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWT 238
AK G VNG+LR + LP + + L+ YSHPVW+V+RW
Sbjct: 106 AKKRGHKGIAKFVNGVLRNI----LREGLPDIDEIKDP---VKRLSIKYSHPVWLVKRWI 158
Query: 239 KYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIR 298
G+E+A K++ N P S+R N+ K ++ +L+ +L +V E SL E +
Sbjct: 159 DQYGEEKAEKILESLNEPPKASIRVNTLK-ISVEELIEKLEEEGYEV--EESLLSPEALV 215
Query: 299 VKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLS 358
++ G N+ L K+GL +QDES+ LV +DP+ G +++D CAAPGGKT ++A L
Sbjct: 216 IEKG--NIAGTDLFKDGLITIQDESSMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLK 273
Query: 359 GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSG 418
G V A+DI++ +L+++ E AK + + I T D R + K DK+L+DAPCSG
Sbjct: 274 NTGKVVALDIHEHKLKLIEENAKRLGLTN-IETKALDARKVHEKFAEKFDKILVDAPCSG 332
Query: 419 LGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVE 478
LGV+ ++ D+++N+ ED+E L+ +Q E+L++ + +K GG+LVYSTC+I+ EENEE +E
Sbjct: 333 LGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVIE 392
Query: 479 AFLLRHPEFSIDPADGLVPSDFV--TKHGFFFSDPIKHSLDGAFAARLVR 526
AFL HPEF + P P + V K G+ P + DG F A+L +
Sbjct: 393 AFLEEHPEFELVPLQHEKPDELVYEVKDGYLQILPNDYGTDGFFIAKLRK 442
|
Length = 444 |
| >gnl|CDD|237858 PRK14904, PRK14904, 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Score = 313 bits (804), Expect = e-102
Identities = 157/432 (36%), Positives = 230/432 (53%), Gaps = 36/432 (8%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L+ D L T++V G +R+R LD +I H + P+L ILR+G Y+++ LD
Sbjct: 35 LERNDRALATELVNGVLRYRLQLDFIISRFYHHD--LEKAAPVLKNILRLGVYQLLFLDR 92
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +A V+E V+LA+ LVNG+LR + ++ L + +A L+
Sbjct: 93 VPRWAAVNECVKLARKYKGEHMAKLVNGVLRNI----SPETISLDEWLK-GMPEAERLSL 147
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
+YSHP W++ RW G+E ++ +NN P F R N K T +
Sbjct: 148 LYSHPEWLLERWIARYGEERTEAMLSYNNQAPLFGFRINRLKT-TPEKFLAAPAD----- 201
Query: 286 PHELSLHLDEFIRVKTGLQNVIQAG-------LLKEGLCAVQDESAGLVVAVVDPQPGQS 338
K+GL N + LK GL +VQ+ + L +++PQPG +
Sbjct: 202 --------ASVTFEKSGLPNFFLSKDFSLFEPFLKLGLVSVQNPTQALACLLLNPQPGST 253
Query: 339 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 398
++D CAAPGGK+ +MA + +G + A+D +L + A + ++I TI D R+
Sbjct: 254 VLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI-TIIETIEGDARS 312
Query: 399 FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPG 458
F+ D +LLDAPC+G GVL +RA+LRW E + EL LQ ELLD A+ L+KPG
Sbjct: 313 FSPEEQP--DAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPG 370
Query: 459 GVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDF---VTKHGFFFSDPIKHS 515
GVLVY+TCSI+PEENE ++EAFL RHPEFS +P+ G +P F G + P +H
Sbjct: 371 GVLVYATCSIEPEENELQIEAFLQRHPEFSAEPSPGSLPEPFHEVAHPKGAILTLPGEHE 430
Query: 516 -LDGAFAARLVR 526
DG FA RL +
Sbjct: 431 GFDGGFAQRLRK 442
|
Length = 445 |
| >gnl|CDD|237856 PRK14901, PRK14901, 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Score = 304 bits (782), Expect = 9e-99
Identities = 160/433 (36%), Positives = 234/433 (54%), Gaps = 34/433 (7%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQ-ILRIGFYE 160
R L D LVT++V G IR RR LD I L K + +P L+ +L +G Y+
Sbjct: 28 LRKYPLSGADRALVTELVYGCIRRRRTLDAWIDQLG---KKPAHKQPPDLRWLLHLGLYQ 84
Query: 161 IVKLD-MPPYAVVDENVRLAK-VALRPGAGNLVNGILRKLVLLKDN-NSLPLPKLEGNDR 217
+ +D +P A V+ V LAK L AG +VNGILR+ + ++ + LPLP D
Sbjct: 85 LRYMDRIPASAAVNTTVELAKQNGLGGLAG-VVNGILRQYLRAREAGDPLPLP----EDP 139
Query: 218 AQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQ 277
+ LA ++S P W+V+ W ++LG EEA +L W N PS LR N + T + V
Sbjct: 140 IER--LAILHSFPDWLVKLWLEWLGLEEAEQLCKWFNQPPSLDLRINPLR--TSLEEVQA 195
Query: 278 LNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQ 337
L + + L + +R+ ++ Q +EG VQD SA LV ++DPQPG+
Sbjct: 196 A-LAEAGITATPIPGLPQGLRLTGNPGSIRQLPGYEEGWWTVQDRSAQLVAPLLDPQPGE 254
Query: 338 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 397
I+D CAAPGGKT ++A + QG ++A+D + RL+ L E A+ + S I+ + AD R
Sbjct: 255 VILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKS-IKILAADSR 313
Query: 398 T---FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLL 454
D++LLDAPCSGLG L + D RW + E ++EL LQ ELL++ + L
Sbjct: 314 NLLELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPL 373
Query: 455 VKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKH 514
+KPGG LVY+TC++ P ENE ++E FL RHP++ ++P P + H +
Sbjct: 374 LKPGGTLVYATCTLHPAENEAQIEQFLARHPDWKLEP-----PKQKIWPH--------RQ 420
Query: 515 SLDGAFAARLVRA 527
DG F A L +
Sbjct: 421 DGDGFFMAVLRKK 433
|
Length = 434 |
| >gnl|CDD|223222 COG0144, Sun, tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 275 bits (705), Expect = 2e-88
Identities = 143/371 (38%), Positives = 200/371 (53%), Gaps = 28/371 (7%)
Query: 166 MPPYAVVDENVRLAKVAL-RPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A VDE V AK L + A VN +LR+L LE R R
Sbjct: 1 VPPHAAVDETVEAAKERLGKDRAAKFVNAVLRRLERS------EEALLEEILRPAFR--- 51
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ 284
YSHP W+V + LG++EA + P SLR N+ K +L+ L +
Sbjct: 52 --YSHPEWLVEKLPDALGEDEAEAIAAALLRPPPRSLRVNTLK-ADVEELL--EALEEAG 106
Query: 285 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
V E LDE +R++ + + EGL VQDE++ L V+DP+PG+ ++D CA
Sbjct: 107 VLDEKPWVLDEVLRIEAS-GPIGRLPEFAEGLIYVQDEASQLPALVLDPKPGERVLDLCA 165
Query: 345 APGGKTLYMASCLSGQG-LVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS 403
APGGKT ++A + +G +V A+D++ RL+ L E K V +VI ++ D R A+
Sbjct: 166 APGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVI-VVNKDARRLAELL 224
Query: 404 --TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVL 461
K D++LLDAPCSG GV+ + D++W R ED+ EL LQ E+L AA L+KPGGVL
Sbjct: 225 PGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVL 284
Query: 462 VYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSD------PIKHS 515
VYSTCS+ PEENEE VE FL RHP+F ++P +P + + P H
Sbjct: 285 VYSTCSLTPEENEEVVERFLERHPDFELEPVR--LPWGPLFEGLGSELGKTRRLYPHVHG 342
Query: 516 LDGAFAARLVR 526
DG F A+L +
Sbjct: 343 TDGFFIAKLRK 353
|
Length = 355 |
| >gnl|CDD|233025 TIGR00563, rsmB, ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Score = 244 bits (623), Expect = 3e-75
Identities = 136/427 (31%), Positives = 204/427 (47%), Gaps = 28/427 (6%)
Query: 103 RTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIV 162
+ + D+D L+ ++ G +R LD LI L +P + L + +
Sbjct: 24 LQQKVSDQDRALLQELCFGVLRTLSQLDWLIKKLMDRPMK---GKPRTVHYLILVGLYQL 80
Query: 163 KLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQAR 221
+P +A V E V AK R G LVNG+LR+ ++ L
Sbjct: 81 LYTRIPAHAAVAETVEGAKAIKRKGLKGLVNGVLRRF--QREQEELLAEF---------N 129
Query: 222 ALATIYSHPVWMVRR-WTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
AL Y HP W+V+R Y GQ + + NN P LR N K +R + + L
Sbjct: 130 ALDARYLHPEWLVKRLQKAYPGQWQ--SICEANNQRPPMWLRINRTKH-SRDEWLALLAE 186
Query: 281 LKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 340
++ + +R++T V +EG VQD SA V + PQ ++I+
Sbjct: 187 AGMKG--FPHDLAPDAVRLETPAA-VHALPGFEEGWVTVQDASAQWVATWLAPQNEETIL 243
Query: 341 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400
D CAAPGGKT ++ L+ Q V A+DI++ RL+ + E K + T D R +
Sbjct: 244 DACAAPGGKTTHILE-LAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPS 302
Query: 401 DNSTV-KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459
+ + D++LLDAPCS GV+ + D++W R+ D+ EL LQ E+LDA L+K GG
Sbjct: 303 QWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGG 362
Query: 460 VLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGA 519
LVY+TCS+ PEEN E+++AFL HP+F P + + V G P DG
Sbjct: 363 TLVYATCSVLPEENSEQIKAFLQEHPDF---PFEKTGTPEQVRDGGLQIL-PHAEEGDGF 418
Query: 520 FAARLVR 526
F A+L++
Sbjct: 419 FYAKLIK 425
|
This protein is also known as sun protein. The reading frame was originally interpreted as two reading frames, fmu and fmv. The recombinant protein from E. coli was shown to methylate only C967 of small subunit (16S) ribosomal RNA and to produce only m5C at that position. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles [Protein synthesis, tRNA and rRNA base modification]. Length = 426 |
| >gnl|CDD|236790 PRK10901, PRK10901, 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Score = 216 bits (554), Expect = 5e-65
Identities = 145/439 (33%), Positives = 218/439 (49%), Gaps = 58/439 (13%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+ + D+D L+ ++ G +R L+ LI L K + ++ +L +G Y+++
Sbjct: 31 QKVSDKDRALLQELCYGVLRRLPRLEWLIAQLLA--KPLKGKQRIVHALLLVGLYQLLYT 88
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P +A VDE V AK RP A LVN +LR+ ++ L L +L+ + A+
Sbjct: 89 RIPAHAAVDETVEAAKALKRPWAKGLVNAVLRRF--QREQEEL-LAELQADPVAR----- 140
Query: 225 TIYSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKL 283
Y+HP W+++R K Y Q +AI + NN P LR N R +R L LL
Sbjct: 141 --YNHPSWLIKRLKKAYPEQWQAI--LAANNQRPPMWLRVNRRH-HSRDAY---LALLAE 192
Query: 284 Q----VPHELS---LHLDEFIRVKT--GLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQ 334
PH + + L+ + V G EG +VQD +A L ++ PQ
Sbjct: 193 AGIEAFPHAVGPDAIRLETPVPVHQLPGFA---------EGWVSVQDAAAQLAATLLAPQ 243
Query: 335 PGQSIVDCCAAPGGKT---LYMASCLSGQGLVYAIDINKGRLRILNET-AKLHQVNSVIR 390
G+ ++D CAAPGGKT L +A V A+DI+ RL + E +L +VI
Sbjct: 244 NGERVLDACAAPGGKTAHILELAPQAQ----VVALDIDAQRLERVRENLQRLGLKATVIV 299
Query: 391 TIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDA 450
D + D D++LLDAPCS GV+ + D++W RR ED+ L LQ E+LDA
Sbjct: 300 GDARDPAQWWDG--QPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDA 357
Query: 451 ASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHG--FFF 508
L+KPGG L+Y+TCSI PEENE++++AFL RHP+ L+ + + G
Sbjct: 358 LWPLLKPGGTLLYATCSILPEENEQQIKAFLARHPDAE------LLDTGTPQQPGRQLL- 410
Query: 509 SDPIKHSLDGAFAARLVRA 527
P + DG F A L++
Sbjct: 411 --PGEEDGDGFFYALLIKR 427
|
Length = 427 |
| >gnl|CDD|184896 PRK14903, PRK14903, 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Score = 183 bits (466), Expect = 2e-52
Identities = 115/380 (30%), Positives = 195/380 (51%), Gaps = 28/380 (7%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
LDD+D R ++V G +R LD I L + + P + LR+G Y+++ ++
Sbjct: 34 LDDKDRRFFKELVWGVVRKEELLDWYINQLLKKK----DIPPAVRVALRMGAYQLLFMNS 89
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P YA V E V+L K LVN +LR+L ++P PK L
Sbjct: 90 VPDYAAVSETVKLVK---NENFKKLVNAVLRRL------RTVPEPK----------ELHL 130
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
YSHP W+V W +L +E +++M WN LR NS +TR +++ L +
Sbjct: 131 KYSHPKWLVNYWRSFLPEEAVLRIMEWNQEPLPTMLRVNSLA-ITREEVIKILAEEGTEA 189
Query: 286 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 345
H + V+ N+ + ++K+GL VQ ES+ +V +++ +PG ++D CAA
Sbjct: 190 VP--GKHSPFSLIVRKLGVNMNDSRVIKDGLATVQGESSQIVPLLMELEPGLRVLDTCAA 247
Query: 346 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 405
PGGKT +A + QG + A+DI++ +++++ + AK +++S I AD +
Sbjct: 248 PGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSS-IEIKIADAERLTEYVQD 306
Query: 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465
D++L+DAPC+ LG ++ ED ++L +Q ++ A L++ GG+L+YST
Sbjct: 307 TFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYST 366
Query: 466 CSIDPEENEERVEAFLLRHP 485
C++ EEN E V+ F+
Sbjct: 367 CTVTKEENTEVVKRFVYEQK 386
|
Length = 431 |
| >gnl|CDD|201649 pfam01189, Nol1_Nop2_Fmu, NOL1/NOP2/sun family | Back alignment and domain information |
|---|
Score = 156 bits (395), Expect = 9e-44
Identities = 83/220 (37%), Positives = 114/220 (51%), Gaps = 15/220 (6%)
Query: 314 EGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRL 373
G VQD S+ L ++PQ + I+D CAAPGGKT ++A + +G V A+D NK RL
Sbjct: 63 NGAVTVQDASSQLDAIALNPQEDEFILDMCAAPGGKTTHIAELMKNEGTVVAVDRNKQRL 122
Query: 374 RILNETAKLHQV-NSVIRTIHADLR-TFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWN 431
+ + + ++ I D R + D++LLDAPCSG GV+ + D++W
Sbjct: 123 KRVYAN--IQRLGVFNIIVQEGDARQIDQKLLGGEFDRILLDAPCSGTGVIRRDPDIKWL 180
Query: 432 RRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHP------ 485
RR D+ +L LQ ELL AA LVKPGGVLVYSTCS+ PEENE ++ FL + P
Sbjct: 181 RREADIAQLAELQKELLKAAWDLVKPGGVLVYSTCSVLPEENEAVIKYFLQKRPDVELVP 240
Query: 486 -EFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARL 524
S P + + DG F A+L
Sbjct: 241 TGLSEGKIALAKRIVKGGLQSL----PHELNRDGFFFAKL 276
|
Length = 277 |
| >gnl|CDD|188051 TIGR00446, nop2p, NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Score = 153 bits (388), Expect = 6e-43
Identities = 73/215 (33%), Positives = 116/215 (53%), Gaps = 8/215 (3%)
Query: 315 GLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLR 374
G Q+ S+ + ++P+ + ++D AAPGGKT ++ + +G + A +I+K R +
Sbjct: 51 GYYYPQEASSMIPPIALEPREDERVLDMAAAPGGKTTQISQLMKNKGCIVANEISKSRTK 110
Query: 375 ILNETAKLHQVN-SVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRR 433
L + ++++ I+AD R F +K D +LLDAPCSG GV+ K + N
Sbjct: 111 AL--ISNINRMGVLNTIVINADGRKFGA-YLLKFDAILLDAPCSGEGVIRKDPSRKRNWS 167
Query: 434 LEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPAD 493
ED++ +LQ EL+DAA +KPGGVLVYSTCS++ EENEE ++ L + P+ +
Sbjct: 168 EEDIKYCSLLQKELIDAAIDALKPGGVLVYSTCSLEVEENEEVIDYILRKRPDVVEEIIK 227
Query: 494 G-LVPSDFVTKH---GFFFSDPIKHSLDGAFAARL 524
G + K G P + +G F A+L
Sbjct: 228 GDEFFGINIGKGEVKGALRVFPQNYDCEGFFVAKL 262
|
[Protein synthesis, tRNA and rRNA base modification]. Length = 264 |
| >gnl|CDD|183387 PRK11933, yebU, rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 6e-25
Identities = 75/217 (34%), Positives = 114/217 (52%), Gaps = 10/217 (4%)
Query: 315 GLCAVQDESAGLVVAVV--DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGR 372
GL +Q+ S+ L VA + D Q ++D AAPG KT +A+ ++ QG + A + + R
Sbjct: 91 GLFYIQEASSMLPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASR 150
Query: 373 LRILNETAKLHQ--VNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRW 430
+++L+ A + + V++V T H D R F D +LLDAPCSG G + K D
Sbjct: 151 VKVLH--ANISRCGVSNVALT-HFDGRVFGAALPETFDAILLDAPCSGEGTVRKDPDALK 207
Query: 431 NRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPE-FSI 489
N E E+ Q EL+++A +KPGG LVYSTC+++ EEN+ +P+
Sbjct: 208 NWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNREENQAVCLWLKETYPDAVEF 267
Query: 490 DPADGLVP--SDFVTKHGFFFSDPIKHSLDGAFAARL 524
+P L P +T+ GF P + +G F ARL
Sbjct: 268 EPLGDLFPGAEKALTEEGFLHVFPQIYDSEGFFVARL 304
|
Length = 470 |
| >gnl|CDD|216253 pfam01029, NusB, NusB family | Back alignment and domain information |
|---|
Score = 87.6 bits (218), Expect = 8e-21
Identities = 36/99 (36%), Positives = 54/99 (54%), Gaps = 2/99 (2%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
DLD+RD T++V G +R LD LI L + ++P+ ILR+G YE+
Sbjct: 28 LLEADLDERDRAFATELVYGVLRNLEELDALIEKLL-ENWPLERLDPVDRAILRLGLYEL 86
Query: 162 VKL-DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLV 199
+ L D+PP+ ++E V LAK + VNG+LRK+
Sbjct: 87 LYLDDIPPHVAINEAVELAKKFGGEKSAGFVNGVLRKIA 125
|
The NusB protein is involved in the regulation of rRNA biosynthesis by transcriptional antitermination. Length = 126 |
| >gnl|CDD|238343 cd00620, Methyltransferase_Sun, N-terminal RNA binding domain of the methyltransferase Sun | Back alignment and domain information |
|---|
Score = 78.5 bits (194), Expect = 1e-17
Identities = 39/94 (41%), Positives = 56/94 (59%), Gaps = 2/94 (2%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
KD DRD L T++V GT+RW LD +I L K +P + +LR+G Y+++ L
Sbjct: 31 KDKSDRDRGLATELVYGTLRWLALLDWIINPLLK--KPDVGKDPDVRNLLRLGLYQLLYL 88
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKL 198
D+PP+A VDE V +AK+ G LVN +LR+
Sbjct: 89 DVPPHAAVDETVEIAKIRKDLGRAGLVNAVLRRF 122
|
The rRNA-specific 5-methylcytidine transferase Sun, also known as RrmB or Fmu shares the RNA-binding non-catalytic domain with the transcription termination factor NusB. The precise biological role of this domain in Sun is unknown, although it is likely to be involved in sequence-specific RNA binding. The C-terminal methyltransferase domain of Sun has been shown to catalyze formation of m5C at position 967 of 16S rRNA in Escherichia coli. Length = 126 |
| >gnl|CDD|238253 cd00447, NusB_Sun, RNA binding domain of NusB (N protein-Utilization Substance B) and Sun (also known as RrmB or Fmu) proteins | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 3e-12
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 3/97 (3%)
Query: 104 TKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI-- 161
L +D ++V G +R LD +I L ++ + ILR+ YE+
Sbjct: 30 KLQLAKKDRPFALELVYGVLRNLPELDDIISPLLKK-WLLDRLDKVDRAILRLLLYELYQ 88
Query: 162 VKLDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKL 198
+ D+PP ++E V LAK + VNG+LR++
Sbjct: 89 LLYDVPPPVAINEAVELAKRFGDDDSAKFVNGVLRRI 125
|
This family includes two orthologous groups exemplified by the transcription termination factor NusB and the N-terminal domain of the rRNA-specific 5-methylcytidine transferase (m5C-methyltransferase) Sun. The NusB protein plays a key role in the regulation of ribosomal RNA biosynthesis in eubacteria by modulating the efficiency of transcriptional antitermination. NusB along with other Nus factors (NusA, NusE/S10 and NusG) forms the core complex with the boxA element of the nut site of the rRNA operons. These interactions help RNA polymerase to counteract polarity during transcription of rRNA operons and allow stable antitermination. The transcription antitermination system can be appropriated by some bacteriophages such as lambda, which use the system to switch between the lysogenic and lytic modes of phage propagation. The m5C-methyltransferase Sun shares the N-terminal non-catalytic RNA-binding domain with NusB. Length = 129 |
| >gnl|CDD|233652 TIGR01951, nusB, transcription antitermination factor NusB | Back alignment and domain information |
|---|
Score = 59.0 bits (144), Expect = 1e-10
Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 7/114 (6%)
Query: 89 GDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLI--CLLCHDEKTFSSM 146
N++ + ++LD+ D ++V G + + +D LI L ++ T +
Sbjct: 18 SGNDLEEIIEEF-LEEEELDEEDREYFRELVRGVLENQEEIDELISPHL---EDWTLERL 73
Query: 147 EPLLLQILRIGFYEIVKLDMPPYAVV-DENVRLAKVALRPGAGNLVNGILRKLV 199
+P+ ILR+ YE++ PY VV +E V LAK + VNG+L K+
Sbjct: 74 DPVDRAILRLAAYELLYRPDVPYKVVINEAVELAKKFGDDDSHKFVNGVLDKIA 127
|
A transcription antitermination complex active in many bacteria was designated N-utilization substance (Nus) in E. coli because of its interaction with phage lambda protein N. This model represents NusB. Other components are NusA and NusG. NusE is, in fact, ribosomal protein S10 [Transcription, Transcription factors]. Length = 129 |
| >gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 1e-08
Identities = 32/138 (23%), Positives = 49/138 (35%), Gaps = 24/138 (17%)
Query: 330 VVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVI 389
V+DP G G L A+ V ++++ + L + +
Sbjct: 4 VLDPGAG----------SGAFLLAAARAGPDARVVGVELDPEAAALARRRLALAGLAPRV 53
Query: 390 RTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLD 449
R + D R + D VL + P R D ++ + L D L
Sbjct: 54 RVVVGDARELLELPDGSFDLVLGNPPYG--------------PRAGDPKDNRDLYDRFLA 99
Query: 450 AASLLVKPGGVLVYSTCS 467
AA L+KPGGVLV T +
Sbjct: 100 AALRLLKPGGVLVVITPA 117
|
This family contains methyltransferase domains. Length = 117 |
| >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 6e-08
Identities = 25/126 (19%), Positives = 41/126 (32%), Gaps = 24/126 (19%)
Query: 339 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 398
++D G L +AS + V +DI+ L + A + + + D
Sbjct: 2 VLDLGCGTGALALALASGPGAR--VTGVDISPVALELA-RKAAAALLADNVEVLKGDAEE 58
Query: 399 FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPG 458
+ D ++ D P L L+ A L+KPG
Sbjct: 59 LPPEADESFDVIISDPPLHH---------------------LVEDLARFLEEARRLLKPG 97
Query: 459 GVLVYS 464
GVLV +
Sbjct: 98 GVLVLT 103
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107 |
| >gnl|CDD|234686 PRK00202, nusB, transcription antitermination protein NusB; Reviewed | Back alignment and domain information |
|---|
Score = 50.9 bits (123), Expect = 9e-08
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 6/101 (5%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLI--CLLCHDEKTFSSMEPLLLQILRIGFY 159
+ D D +V G + + LD LI L + T ++P+ ILR+ Y
Sbjct: 32 LLEEQYDKADPAYFRSLVRGVVENQAELDELISPYL---KDWTLERLDPVERAILRLALY 88
Query: 160 EIVKLDMPPYAVV-DENVRLAKVALRPGAGNLVNGILRKLV 199
E++ D PY VV +E + LAK + VNG+L K+
Sbjct: 89 ELLFRDDVPYKVVINEAIELAKKFGDEDSHKFVNGVLDKIA 129
|
Length = 137 |
| >gnl|CDD|223852 COG0781, NusB, Transcription termination factor [Transcription] | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 3e-07
Identities = 35/146 (23%), Positives = 59/146 (40%), Gaps = 9/146 (6%)
Query: 58 SPHRAVSAVRLMRIQ-FGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVT 116
S R R + L+ G S ++ + +E D++ D
Sbjct: 2 SKKPPKLTRRQARELAVQALYQWELS--GSVSAEDILEDIEEEFVENELDIELADSEYFR 59
Query: 117 DIVGGTIRWRRYLDHLI--CLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAVV-D 173
+V G + + LD LI L + + ++ + ILR+ YE++ D PY VV +
Sbjct: 60 SLVKGVLENQEELDELISPHL---KKWSLERLDLVERAILRLALYELLFRDDVPYKVVIN 116
Query: 174 ENVRLAKVALRPGAGNLVNGILRKLV 199
E + LAK + VNG+L K+
Sbjct: 117 EAIELAKKFSGEDSHKFVNGVLDKIA 142
|
Length = 151 |
| >gnl|CDD|238342 cd00619, Terminator_NusB, Transcription termination factor NusB (N protein-Utilization Substance B) | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 2e-06
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 12/87 (13%)
Query: 119 VGGTIRWRRYLDHLICLLCHDEK-----TFSSMEPLLLQILRIGFYEIVKLDMPPYAVV- 172
V G + +D LI EK + + + ILR+ YE++ L P+ VV
Sbjct: 47 VRGVLENIEEIDELI------EKHLRNWSLDRLAIVERAILRLAVYELLFLPDVPHPVVI 100
Query: 173 DENVRLAKVALRPGAGNLVNGILRKLV 199
+E + LAK + VNG+L K+
Sbjct: 101 NEAIELAKRFGGDDSHKFVNGVLDKIA 127
|
NusB plays a key role in the regulation of ribosomal RNA biosynthesis in eubacteria by modulating the efficiency of transcriptional antitermination. NusB along with other Nus factors (NusA, NusE/S10 and NusG) forms the core complex with the boxA element of the nut site of the rRNA operons. These interactions help RNA polymerase to counteract polarity during transcription of rRNA operons and allow stable antitermination. The transcription antitermination system can be appropriated by some bacteriophages such as lambda, which use the system to switch between the lysogenic and lytic modes of phage propagation. Length = 130 |
| >gnl|CDD|202251 pfam02475, Met_10, Met-10+ like-protein | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 7e-05
Identities = 36/130 (27%), Positives = 55/130 (42%), Gaps = 29/130 (22%)
Query: 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH 393
+ G+ +VD A G ++ +A S VYA+++N ++ L E KL++V VI I
Sbjct: 99 KEGEVVVDMFAGIGPFSIPIAK-HSKAKRVYAVELNPEAVKYLKENIKLNKVEGVISPIL 157
Query: 394 ADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASL 453
D+R D+V+++ P K A E LD A
Sbjct: 158 GDVRDVI--LEGVADRVIMNLP--------KSA------------------HEFLDKALR 189
Query: 454 LVKPGGVLVY 463
VK GGV+ Y
Sbjct: 190 AVKDGGVIHY 199
|
The methionine-10 mutant allele of N. crassa codes for a protein of unknown function. However, homologous proteins have been found in yeast suggesting this protein may be involved in methionine biosynthesis, transport and/or utilisation. Length = 199 |
| >gnl|CDD|224017 COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 5e-04
Identities = 38/146 (26%), Positives = 65/146 (44%), Gaps = 25/146 (17%)
Query: 329 AVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSV 388
A+ + G+ +++ + GG +++ A L G V ++D++K L E A+L+ ++
Sbjct: 211 ALGELAAGKRVLNLFSYTGGFSVHAA--LGGASEVTSVDLSKRALEWARENAELNGLDGD 268
Query: 389 -IRTIHAD----LRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKIL 443
R I D LR K D ++LD P ++ +E
Sbjct: 269 RHRFIVGDVFKWLRKAERRGE-KFDLIILDPP-----SFARSKK----------QEFSAQ 312
Query: 444 QD--ELLDAASLLVKPGGVLVYSTCS 467
+D +L D A L+ PGG LV S+CS
Sbjct: 313 RDYKDLNDLALRLLAPGGTLVTSSCS 338
|
Length = 393 |
| >gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 7e-04
Identities = 32/132 (24%), Positives = 45/132 (34%), Gaps = 28/132 (21%)
Query: 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA 394
PG ++D G + +A L V +D++ L + E AKL + I +
Sbjct: 1 PGARVLDIGCGTGSLAIELAR-LFPGARVTGVDLSPEMLELARENAKLA-LGPRITFVQG 58
Query: 395 DLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLL 454
D D D V G G ELLDA + L
Sbjct: 59 DAPDALDLLE-GFDAVF----IGGGGGD---------------------LLELLDALASL 92
Query: 455 VKPGGVLVYSTC 466
+KPGG LV +
Sbjct: 93 LKPGGRLVLNAV 104
|
Protein in this family function as methyltransferases. Length = 104 |
| >gnl|CDD|216666 pfam01728, FtsJ, FtsJ-like methyltransferase | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.001
Identities = 29/134 (21%), Positives = 46/134 (34%), Gaps = 22/134 (16%)
Query: 331 VDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIR 390
+ P G++++D AAPGG + + G G V A+D+ + +
Sbjct: 18 LKPGKGKTVLDLGAAPGGFSQVLLE-RGGAGKVVAVDLGPMEPIQGVYFLRGDITD---P 73
Query: 391 TIHADLRTFADNSTVKCDKVLLDA--PCSGLGVLSKRADLRWNRRLEDMEELKILQDELL 448
LR K D VL D SG+ + +L L
Sbjct: 74 ETLEKLRELLPG---KVDLVLSDGAPNVSGIENTD-----------SFISLQLVL--AAL 117
Query: 449 DAASLLVKPGGVLV 462
A +++PGG V
Sbjct: 118 LLALEVLRPGGNFV 131
|
This family consists of FtsJ from various bacterial and archaeal sources FtsJ is a methyltransferase, but actually has no effect on cell division. FtsJ's substrate is the 23S rRNA. The 1.5 A crystal structure of FtsJ in complex with its cofactor S-adenosylmethionine revealed that FtsJ has a methyltransferase fold. This family also includes the N terminus of flaviviral NS5 protein. It has been hypothesised that the N-terminal domain of NS5 is a methyltransferase involved in viral RNA capping. Length = 177 |
| >gnl|CDD|225318 COG2520, COG2520, Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.001
Identities = 37/150 (24%), Positives = 62/150 (41%), Gaps = 32/150 (21%)
Query: 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH 393
+ G++++D A G ++ +A G+ VYAIDIN + L E +L++V + I
Sbjct: 187 KEGETVLDMFAGVGPFSIPIAK--KGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPIL 244
Query: 394 ADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASL 453
D R A V D++++ P S E L A
Sbjct: 245 GDAREVAPELGV-ADRIIMGLPKS--------------------------AHEFLPLALE 277
Query: 454 LVKPGGVL-VYSTCSID--PEENEERVEAF 480
L+K GG++ Y D E E+R+++
Sbjct: 278 LLKDGGIIHYYEFVPEDDIEERPEKRIKSA 307
|
Length = 341 |
| >gnl|CDD|233880 TIGR02469, CbiT, precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 0.001
Identities = 31/137 (22%), Positives = 53/137 (38%), Gaps = 27/137 (19%)
Query: 326 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQV 385
L ++ + +PG + D A G T+ A L G VYAI+ N L ++ + V
Sbjct: 10 LTLSKLRLRPGDVLWDIGAGTGSVTIEAAR-LVPNGRVYAIERNPEALDLIERNLRRFGV 68
Query: 386 NSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQD 445
++ I + D ++ D V + G G L+
Sbjct: 69 SN-IVIVEGDAPEAPEDLLPDPDAVFV----GGSG-----------GLLQ---------- 102
Query: 446 ELLDAASLLVKPGGVLV 462
E+L+A ++PGG +V
Sbjct: 103 EILEAVERRLRPGGRIV 119
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 124 |
| >gnl|CDD|223370 COG0293, FtsJ, 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.002
Identities = 22/82 (26%), Positives = 30/82 (36%), Gaps = 9/82 (10%)
Query: 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRT--I 392
PG +VD AAPGG + A L G + A+DI + + + I
Sbjct: 45 PGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPI-----PGVIFLQGDITDEDT 99
Query: 393 HADLRTFADNSTVKCDKVLLDA 414
L + V D VL D
Sbjct: 100 LEKLLEALGGAPV--DVVLSDM 119
|
Length = 205 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 528 | |||
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 100.0 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 100.0 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 100.0 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 100.0 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 100.0 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 100.0 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 100.0 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 100.0 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 100.0 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 100.0 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 100.0 | |
| KOG2360 | 413 | consensus Proliferation-associated nucleolar prote | 99.97 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 99.97 | |
| COG0781 | 151 | NusB Transcription termination factor [Transcripti | 99.95 | |
| PF01029 | 134 | NusB: NusB family; InterPro: IPR006027 This domain | 99.94 | |
| cd00619 | 130 | Terminator_NusB Transcription termination factor N | 99.94 | |
| PRK00202 | 137 | nusB transcription antitermination protein NusB; R | 99.94 | |
| TIGR01951 | 129 | nusB transcription antitermination factor NusB. A | 99.94 | |
| cd00620 | 126 | Methyltransferase_Sun N-terminal RNA binding domai | 99.93 | |
| cd00447 | 129 | NusB_Sun RNA binding domain of NusB (N protein-Uti | 99.89 | |
| PRK09634 | 207 | nusB transcription antitermination protein NusB; P | 99.85 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 99.73 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 99.72 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 99.66 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.64 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.62 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.62 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.62 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.62 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.6 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.6 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.57 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.56 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.55 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.54 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.54 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 99.53 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.53 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.51 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.5 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.49 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.48 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 99.48 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.47 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.47 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.46 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.46 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.45 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.45 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 99.45 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.44 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.43 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.43 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 99.43 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.42 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.42 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 99.41 | |
| PLN02476 | 278 | O-methyltransferase | 99.41 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.41 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.4 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.4 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.39 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 99.38 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 99.38 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.37 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.37 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.37 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.37 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.35 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.35 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.34 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 99.34 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 99.33 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 99.33 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.33 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 99.32 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.32 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 99.32 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 99.32 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 99.31 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 99.31 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 99.31 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.3 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.3 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 99.3 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 99.29 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 99.29 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.29 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.29 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.29 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.28 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 99.28 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.28 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 99.28 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.28 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 99.28 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.27 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 99.26 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.26 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.25 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.25 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.25 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.25 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 99.24 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 99.23 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 99.23 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.22 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.22 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.22 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.22 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 99.21 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 99.2 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.2 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.2 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 99.19 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 99.17 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 99.17 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 99.16 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.15 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.15 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.14 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.14 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.14 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 99.14 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 99.12 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.12 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.12 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.11 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.1 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.1 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.1 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.09 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.08 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 99.08 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.08 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.07 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.07 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.05 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.05 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.05 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.04 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 99.04 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.02 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 99.02 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.01 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 99.0 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 98.97 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 98.96 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 98.94 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.94 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 98.92 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 98.91 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 98.91 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.9 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 98.9 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.89 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.88 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 98.88 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 98.88 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 98.88 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.86 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 98.86 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.86 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.85 | |
| PLN02366 | 308 | spermidine synthase | 98.83 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 98.82 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 98.82 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 98.82 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 98.81 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 98.81 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 98.8 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 98.8 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 98.79 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 98.79 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 98.78 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 98.77 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.75 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 98.74 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.74 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 98.74 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.72 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 98.69 | |
| PLN02823 | 336 | spermine synthase | 98.69 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 98.68 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 98.67 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 98.66 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 98.64 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 98.64 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 98.63 | |
| KOG2671 | 421 | consensus Putative RNA methylase [Replication, rec | 98.61 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 98.56 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 98.56 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 98.56 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.54 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 98.52 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.5 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.47 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 98.43 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 98.42 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 98.41 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.4 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 98.4 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 98.39 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 98.36 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 98.36 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 98.35 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 98.34 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 98.34 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 98.31 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 98.29 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 98.28 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.27 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 98.27 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 98.27 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 98.27 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.27 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 98.25 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 98.24 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 98.21 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 98.17 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 98.17 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 98.16 | |
| KOG1253 | 525 | consensus tRNA methyltransferase [Translation, rib | 98.15 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 98.14 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 98.13 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 98.13 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 98.12 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 98.12 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 98.11 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 98.11 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.06 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 98.01 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 98.0 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 97.98 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 97.89 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 97.85 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 97.85 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 97.83 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 97.82 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 97.78 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 97.78 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 97.78 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 97.76 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 97.72 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 97.7 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 97.64 | |
| TIGR00497 | 501 | hsdM type I restriction system adenine methylase ( | 97.64 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 97.63 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 97.62 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 97.61 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 97.59 | |
| KOG1098 | 780 | consensus Putative SAM-dependent rRNA methyltransf | 97.57 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 97.57 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 97.51 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 97.49 | |
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 97.47 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 97.39 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 97.36 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 97.36 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 97.34 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 97.29 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 97.26 | |
| KOG1227 | 351 | consensus Putative methyltransferase [General func | 97.18 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 97.17 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 97.12 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 97.06 | |
| PF00145 | 335 | DNA_methylase: C-5 cytosine-specific DNA methylase | 96.89 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 96.83 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 96.73 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 96.64 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 96.53 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 96.49 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 96.41 | |
| COG1568 | 354 | Predicted methyltransferases [General function pre | 96.38 | |
| TIGR00675 | 315 | dcm DNA-methyltransferase (dcm). All proteins in t | 96.34 | |
| KOG2078 | 495 | consensus tRNA modification enzyme [RNA processing | 96.24 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 96.2 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 96.17 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 96.13 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 96.04 | |
| PHA01634 | 156 | hypothetical protein | 95.95 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 95.95 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 95.88 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 95.87 | |
| COG0270 | 328 | Dcm Site-specific DNA methylase [DNA replication, | 95.85 | |
| PF10237 | 162 | N6-adenineMlase: Probable N6-adenine methyltransfe | 95.82 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 95.77 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 95.54 | |
| PF07279 | 218 | DUF1442: Protein of unknown function (DUF1442); In | 95.38 | |
| PRK10458 | 467 | DNA cytosine methylase; Provisional | 95.34 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 95.22 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 95.21 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 95.2 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 94.89 | |
| PRK13699 | 227 | putative methylase; Provisional | 94.84 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 94.71 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 94.39 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 94.25 | |
| KOG2782 | 303 | consensus Putative SAM dependent methyltransferase | 94.15 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 94.07 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 94.06 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 93.93 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 93.83 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 93.75 | |
| PF05711 | 248 | TylF: Macrocin-O-methyltransferase (TylF); InterPr | 93.63 | |
| PRK13699 | 227 | putative methylase; Provisional | 93.51 | |
| COG3510 | 237 | CmcI Cephalosporin hydroxylase [Defense mechanisms | 93.35 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 92.89 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 92.83 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 92.66 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 92.23 | |
| PRK07576 | 264 | short chain dehydrogenase; Provisional | 92.19 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 92.11 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 91.58 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 91.44 | |
| COG2933 | 358 | Predicted SAM-dependent methyltransferase [General | 90.89 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 90.83 | |
| PRK06914 | 280 | short chain dehydrogenase; Provisional | 90.52 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 90.41 | |
| PRK08213 | 259 | gluconate 5-dehydrogenase; Provisional | 90.28 | |
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 90.22 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 90.12 | |
| PF05430 | 124 | Methyltransf_30: S-adenosyl-L-methionine-dependent | 90.09 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 90.07 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 89.94 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 89.88 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 89.61 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 89.61 | |
| COG2961 | 279 | ComJ Protein involved in catabolism of external DN | 89.55 | |
| PRK07063 | 260 | short chain dehydrogenase; Provisional | 89.51 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 89.49 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 89.47 | |
| PRK07533 | 258 | enoyl-(acyl carrier protein) reductase; Provisiona | 89.19 | |
| PRK06940 | 275 | short chain dehydrogenase; Provisional | 89.18 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 89.1 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 88.78 | |
| PRK08594 | 257 | enoyl-(acyl carrier protein) reductase; Provisiona | 88.68 | |
| PRK08339 | 263 | short chain dehydrogenase; Provisional | 88.39 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 88.35 | |
| PF07669 | 106 | Eco57I: Eco57I restriction-modification methylase; | 88.35 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 88.3 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 88.3 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 88.16 | |
| PRK06949 | 258 | short chain dehydrogenase; Provisional | 87.92 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 87.87 | |
| PRK09242 | 257 | tropinone reductase; Provisional | 87.78 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 87.55 | |
| PRK07062 | 265 | short chain dehydrogenase; Provisional | 87.54 | |
| PRK07831 | 262 | short chain dehydrogenase; Provisional | 87.48 | |
| KOG1197 | 336 | consensus Predicted quinone oxidoreductase [Energy | 87.46 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 87.39 | |
| PRK08945 | 247 | putative oxoacyl-(acyl carrier protein) reductase; | 87.27 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 87.25 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 87.2 | |
| PRK07814 | 263 | short chain dehydrogenase; Provisional | 87.14 | |
| PRK07097 | 265 | gluconate 5-dehydrogenase; Provisional | 87.13 | |
| PRK05599 | 246 | hypothetical protein; Provisional | 87.03 | |
| cd08293 | 345 | PTGR2 Prostaglandin reductase. Prostaglandins and | 86.99 | |
| cd08294 | 329 | leukotriene_B4_DH_like 13-PGR is a bifunctional en | 86.98 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 86.96 | |
| PRK08085 | 254 | gluconate 5-dehydrogenase; Provisional | 86.91 | |
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 86.83 | |
| PRK08415 | 274 | enoyl-(acyl carrier protein) reductase; Provisiona | 86.79 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 86.75 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 86.51 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 86.47 | |
| KOG4174 | 282 | consensus Uncharacterized conserved protein [Funct | 86.44 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 86.44 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 86.38 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 86.24 | |
| PLN02989 | 325 | cinnamyl-alcohol dehydrogenase family protein | 86.23 | |
| PTZ00357 | 1072 | methyltransferase; Provisional | 86.15 | |
| cd08278 | 365 | benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be | 86.07 | |
| PRK05876 | 275 | short chain dehydrogenase; Provisional | 86.05 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 86.01 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 85.66 | |
| PRK12937 | 245 | short chain dehydrogenase; Provisional | 85.65 | |
| PRK06172 | 253 | short chain dehydrogenase; Provisional | 85.62 | |
| KOG2912 | 419 | consensus Predicted DNA methylase [Function unknow | 85.33 | |
| PRK08159 | 272 | enoyl-(acyl carrier protein) reductase; Provisiona | 85.32 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 85.31 | |
| PRK06505 | 271 | enoyl-(acyl carrier protein) reductase; Provisiona | 85.31 | |
| PRK10083 | 339 | putative oxidoreductase; Provisional | 85.29 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 85.22 | |
| cd08238 | 410 | sorbose_phosphate_red L-sorbose-1-phosphate reduct | 85.03 | |
| PRK12744 | 257 | short chain dehydrogenase; Provisional | 85.03 | |
| KOG3924 | 419 | consensus Putative protein methyltransferase invol | 85.0 | |
| PF00106 | 167 | adh_short: short chain dehydrogenase alcohol dehyd | 84.95 | |
| KOG2651 | 476 | consensus rRNA adenine N-6-methyltransferase [RNA | 84.88 | |
| PRK08862 | 227 | short chain dehydrogenase; Provisional | 84.85 | |
| cd08232 | 339 | idonate-5-DH L-idonate 5-dehydrogenase. L-idonate | 84.78 | |
| PRK12384 | 259 | sorbitol-6-phosphate dehydrogenase; Provisional | 84.69 | |
| PRK06603 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 84.66 | |
| PRK08063 | 250 | enoyl-(acyl carrier protein) reductase; Provisiona | 84.64 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 84.51 | |
| PLN02740 | 381 | Alcohol dehydrogenase-like | 84.47 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 84.44 | |
| cd05285 | 343 | sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a | 84.4 | |
| PRK07677 | 252 | short chain dehydrogenase; Provisional | 84.32 | |
| PRK08589 | 272 | short chain dehydrogenase; Validated | 84.23 | |
| COG1062 | 366 | AdhC Zn-dependent alcohol dehydrogenases, class II | 84.23 | |
| PRK08643 | 256 | acetoin reductase; Validated | 84.17 | |
| PRK06079 | 252 | enoyl-(acyl carrier protein) reductase; Provisiona | 84.04 | |
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 83.95 | |
| PRK07889 | 256 | enoyl-(acyl carrier protein) reductase; Provisiona | 83.66 | |
| PF05050 | 167 | Methyltransf_21: Methyltransferase FkbM domain; In | 83.54 | |
| PRK06500 | 249 | short chain dehydrogenase; Provisional | 83.51 | |
| PRK12746 | 254 | short chain dehydrogenase; Provisional | 83.46 | |
| cd05278 | 347 | FDH_like Formaldehyde dehydrogenases. Formaldehyde | 83.2 | |
| TIGR01963 | 255 | PHB_DH 3-hydroxybutyrate dehydrogenase. This model | 83.14 | |
| PRK07067 | 257 | sorbitol dehydrogenase; Provisional | 82.93 | |
| PF04378 | 245 | RsmJ: Ribosomal RNA small subunit methyltransferas | 82.82 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 82.66 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 82.64 | |
| PRK07102 | 243 | short chain dehydrogenase; Provisional | 82.59 | |
| PRK06125 | 259 | short chain dehydrogenase; Provisional | 82.46 | |
| PRK08251 | 248 | short chain dehydrogenase; Provisional | 82.28 | |
| PRK09186 | 256 | flagellin modification protein A; Provisional | 82.24 | |
| PRK06181 | 263 | short chain dehydrogenase; Provisional | 82.14 | |
| PRK07666 | 239 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 82.11 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 82.02 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 81.87 | |
| PRK09291 | 257 | short chain dehydrogenase; Provisional | 81.85 | |
| TIGR03206 | 250 | benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr | 81.73 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 81.72 | |
| cd08261 | 337 | Zn_ADH7 Alcohol dehydrogenases of the MDR family. | 81.7 | |
| cd08255 | 277 | 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_ | 81.53 | |
| TIGR02415 | 254 | 23BDH acetoin reductases. One member of this famil | 81.48 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 81.15 | |
| PRK05650 | 270 | short chain dehydrogenase; Provisional | 81.14 | |
| cd08285 | 351 | NADP_ADH NADP(H)-dependent alcohol dehydrogenases. | 80.99 | |
| PRK05872 | 296 | short chain dehydrogenase; Provisional | 80.97 | |
| cd08236 | 343 | sugar_DH NAD(P)-dependent sugar dehydrogenases. Th | 80.85 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 80.79 | |
| PRK08263 | 275 | short chain dehydrogenase; Provisional | 80.75 | |
| PRK07904 | 253 | short chain dehydrogenase; Provisional | 80.67 | |
| PLN02662 | 322 | cinnamyl-alcohol dehydrogenase family protein | 80.66 | |
| PRK12742 | 237 | oxidoreductase; Provisional | 80.62 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 80.58 | |
| COG0677 | 436 | WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas | 80.57 | |
| cd08296 | 333 | CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci | 80.54 | |
| KOG0821 | 326 | consensus Predicted ribosomal RNA adenine dimethyl | 80.4 | |
| PRK09072 | 263 | short chain dehydrogenase; Provisional | 80.3 |
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-82 Score=678.14 Aligned_cols=427 Identities=37% Similarity=0.594 Sum_probs=378.1
Q ss_pred hHHHHHHHHHHHHHhCCCchHHHhhcCCCCCCCccchhhhhcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 009708 59 PHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCH 138 (528)
Q Consensus 59 ~aR~~A~~~Ly~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lv~gv~~~~~~LD~~i~~~l~ 138 (528)
++|+.|+|+||+++. +.+++.+++.. ++...++++|++|+++||+||+|++..||++|+++++
T Consensus 2 ~~R~~A~~~L~~i~~-~~~~~~~l~~~----------------~~~~~l~~~dr~~~~~lv~gvlr~~~~lD~~i~~~~~ 64 (434)
T PRK14901 2 NARQLAWEILQAVAR-GAYADVALERV----------------LRKYPLSGADRALVTELVYGCIRRRRTLDAWIDQLGK 64 (434)
T ss_pred CHHHHHHHHHHHHHc-CCchHHHHHHH----------------HHhcCCChhHHHHHHHHHHHHHHhHHHHHHHHHHhcC
Confidence 369999999999987 57777666432 1233578899999999999999999999999999986
Q ss_pred CCCCCCcccHHHHHHHHHHHHHHHhcC-CCCchhHHHHHHHHHHhcCCCchhhHHHHHHHHHhhcCCC-CCCCCcCcCCc
Q 009708 139 DEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNN-SLPLPKLEGND 216 (528)
Q Consensus 139 ~~~~~~~l~~~~~~iLrlg~~el~~~~-~p~~~~inEaV~lak~~~~~~~~~fVN~VL~~~~r~~~~~-~~~~~~~~~~~ 216 (528)
|++.++++++++|||+|+|||+|++ +|++++|||+|++||++++++.++|||||||++.+..+.. ....+ +
T Consensus 65 --~~~~~l~~~~r~iLrla~yel~~~~~~p~~aavneaVelak~~~~~~~~~fVNgVLr~~~r~~~~~~~~~~~----~- 137 (434)
T PRK14901 65 --KPAHKQPPDLRWLLHLGLYQLRYMDRIPASAAVNTTVELAKQNGLGGLAGVVNGILRQYLRAREAGDPLPLP----E- 137 (434)
T ss_pred --CChhhcCHHHHHHHHHHHHHHHhCccCCcHHHHHHHHHHHHHcCchhhhhhcCHHHHHHHHhhhccccccCC----c-
Confidence 7788899999999999999999987 8999999999999999999899999999999999964321 11111 1
Q ss_pred HHHHHHHHhhhcChHHHHHHHHHHhCHHHHHHHHHhcCCCCCeEEEEcCCCCCCHHHHHHHHhhcCCCCCceecccCCce
Q 009708 217 RAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEF 296 (528)
Q Consensus 217 ~~~~~~ls~~~s~P~w~~~~~~~~~g~~~~~~~~~~~~~~~~~~~rvn~~k~~~~~~~~~~L~~~~~~~~~~~~~~~~~~ 296 (528)
....+++++||+|+||+++|.+.||.+++++++++++++||+++|||++| .+++++.+.|++.|+ ..+..+++++.
T Consensus 138 -~~~~~l~~~~s~P~wl~~~~~~~~g~~~~~~~~~~~~~~~~~~~Rvn~~k-~~~~~~~~~l~~~g~--~~~~~~~~~~~ 213 (434)
T PRK14901 138 -DPIERLAILHSFPDWLVKLWLEWLGLEEAEQLCKWFNQPPSLDLRINPLR-TSLEEVQAALAEAGI--TATPIPGLPQG 213 (434)
T ss_pred -ChHHHHHHHhCCcHHHHHHHHHHhCHHHHHHHHHHhCCCCCeEEEECCCC-CCHHHHHHHHHHCCC--ceEECCCCCCe
Confidence 13467999999999999999999999999999999999999999999999 799999999999665 45667788888
Q ss_pred EEeeCCccchhcccccccceeEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHH
Q 009708 297 IRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRIL 376 (528)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~ 376 (528)
+++......+...+.|.+|++++||.+|++++.++++++|++|||+|||||++|+++++.+++.++|+|+|+++.+++.+
T Consensus 214 ~~~~~~~~~~~~~~~f~~g~~~~qd~~s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~ 293 (434)
T PRK14901 214 LRLTGNPGSIRQLPGYEEGWWTVQDRSAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKL 293 (434)
T ss_pred EEecCCCCccccChHHhCCeEEEECHHHHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHH
Confidence 88865322466778999999999999999999999999999999999999999999999988788999999999999999
Q ss_pred HHHHHHcCCCccEEEEcCccccccc---cCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhc
Q 009708 377 NETAKLHQVNSVIRTIHADLRTFAD---NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASL 453 (528)
Q Consensus 377 ~~n~~~~g~~~~i~~~~~D~~~~~~---~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~ 453 (528)
++|++++|+++ ++++++|+..+.. ...++||.|++||||||+|+++++|+++|..++.++..+..+|.++|.++++
T Consensus 294 ~~n~~r~g~~~-v~~~~~D~~~~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~ 372 (434)
T PRK14901 294 QENAQRLGLKS-IKILAADSRNLLELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAP 372 (434)
T ss_pred HHHHHHcCCCe-EEEEeCChhhcccccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999986 8999999987652 1236799999999999999999999999999999999999999999999999
Q ss_pred cCcCCCEEEEEcCCCCchhhHHHHHHHHhhCCCceEecCCCCCCCccccCCceEEEcCCCCCCCceEEEEEEec
Q 009708 454 LVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLVRA 527 (528)
Q Consensus 454 ~LkpGG~LvysTcs~~~~Ene~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~~~dGff~a~l~k~ 527 (528)
+|||||+|||+|||++++||+++|.+|+++||+|++.+.. + +++||.|++||||+|+|+|.
T Consensus 373 ~lkpgG~lvystcsi~~~Ene~~v~~~l~~~~~~~~~~~~-----------~--~~~P~~~~~dGfF~a~l~k~ 433 (434)
T PRK14901 373 LLKPGGTLVYATCTLHPAENEAQIEQFLARHPDWKLEPPK-----------Q--KIWPHRQDGDGFFMAVLRKK 433 (434)
T ss_pred hcCCCCEEEEEeCCCChhhHHHHHHHHHHhCCCcEecCCC-----------C--ccCCCCCCCCcEEEEEEEeC
Confidence 9999999999999999999999999999999999865420 0 26899999999999999985
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-80 Score=655.01 Aligned_cols=422 Identities=29% Similarity=0.466 Sum_probs=371.9
Q ss_pred hHHHHHHHHHHHHHhCCCchHHHhhcCCCCCCCccchhhhhcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 009708 59 PHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCH 138 (528)
Q Consensus 59 ~aR~~A~~~Ly~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lv~gv~~~~~~LD~~i~~~l~ 138 (528)
++|++|+++|+++...+.+++.+++.. +. .++++|++|+++|||||+|++..||++|+++++
T Consensus 4 ~~R~~A~~~L~~v~~~~~~~~~~l~~~----------------~~--~l~~~d~~~~~~lv~gvlr~~~~lD~~i~~~~~ 65 (431)
T PRK14903 4 NVRLLAYRLLRKYEKEKFIFREDVDSV----------------LS--FLDDKDRRFFKELVWGVVRKEELLDWYINQLLK 65 (431)
T ss_pred CHHHHHHHHHHHHHhCCCchHHHHHHH----------------HH--hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 369999999999999888877766431 12 588999999999999999999999999999997
Q ss_pred CCCCCCcccHHHHHHHHHHHHHHHhcC-CCCchhHHHHHHHHHHhcCCCchhhHHHHHHHHHhhcCCCCCCCCcCcCCcH
Q 009708 139 DEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDR 217 (528)
Q Consensus 139 ~~~~~~~l~~~~~~iLrlg~~el~~~~-~p~~~~inEaV~lak~~~~~~~~~fVN~VL~~~~r~~~~~~~~~~~~~~~~~ 217 (528)
+ | ++++++++|||+|+|||+|++ +|++++|||+|+|||++ ..++|||||||+++++.. +
T Consensus 66 ~-~---~l~~~~r~iLr~~~yel~~~~~~p~~aavneaV~lak~~---~~~~fVNaVLr~~~r~~~------~------- 125 (431)
T PRK14903 66 K-K---DIPPAVRVALRMGAYQLLFMNSVPDYAAVSETVKLVKNE---NFKKLVNAVLRRLRTVPE------P------- 125 (431)
T ss_pred C-C---CCCHHHHHHHHHHHHHHHhccCCCcceeHHHHHHHHhcc---chHHHHHHHHHHHHHhhc------c-------
Confidence 5 4 699999999999999999998 79999999999999985 578999999999998511 1
Q ss_pred HHHHHHHhhhcChHHHHHHHHHHhCHHHHHHHHHhcCCCCCeEEEEcCCCCCCHHHHHHHHhhcCCCCCceecccCCceE
Q 009708 218 AQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFI 297 (528)
Q Consensus 218 ~~~~~ls~~~s~P~w~~~~~~~~~g~~~~~~~~~~~~~~~~~~~rvn~~k~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~ 297 (528)
.+++++||+|+||+++|.+.||.+++++++++++++||+++|||++| .+++++.+.|+..|+ .....++.+..+
T Consensus 126 ---~~l~~~~s~P~wl~~~~~~~~g~~~~~~~~~~~~~~~~~~~RvN~~k-~~~~~~~~~l~~~g~--~~~~~~~~~~~~ 199 (431)
T PRK14903 126 ---KELHLKYSHPKWLVNYWRSFLPEEAVLRIMEWNQEPLPTMLRVNSLA-ITREEVIKILAEEGT--EAVPGKHSPFSL 199 (431)
T ss_pred ---hhhhhhhcCcHHHHHHHHHHcCHHHHHHHHHHhcCCCCeeEEeeCCc-CCHHHHHHHHHHCCC--eeEECCCCCceE
Confidence 25889999999999999999999999999999999999999999999 799999999998765 345667788888
Q ss_pred EeeCCccchhcccccccceeEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHH
Q 009708 298 RVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILN 377 (528)
Q Consensus 298 ~~~~~~~~~~~~~~~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~ 377 (528)
++......+..++.|++|.+++||.+|++++.++++++|++|||+|||||+||+++++.++++++|+|+|+++.+++.++
T Consensus 200 ~~~~~~~~~~~~~~~~~G~~~~Qd~~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~ 279 (431)
T PRK14903 200 IVRKLGVNMNDSRVIKDGLATVQGESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVE 279 (431)
T ss_pred EEcCCCCCcccChHHHCCeEEEECHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHH
Confidence 77642224667788999999999999999999999999999999999999999999999988899999999999999999
Q ss_pred HHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcC
Q 009708 378 ETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKP 457 (528)
Q Consensus 378 ~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~Lkp 457 (528)
+|+++.|+++ ++++++|+..+.....++||.|++||||||+|+++++|+++|+.+++++..+..+|.++|.+++++|||
T Consensus 280 ~n~~r~g~~~-v~~~~~Da~~l~~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lkp 358 (431)
T PRK14903 280 KHAKRLKLSS-IEIKIADAERLTEYVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEK 358 (431)
T ss_pred HHHHHcCCCe-EEEEECchhhhhhhhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999986 899999998765333467999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEcCCCCchhhHHHHHHHHhhCCCceEecCCCCCCC----ccccCCceEEEcCCCCCCCceEEEEEEec
Q 009708 458 GGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPS----DFVTKHGFFFSDPIKHSLDGAFAARLVRA 527 (528)
Q Consensus 458 GG~LvysTcs~~~~Ene~~v~~~l~~~~~~~~~~~~~~~~~----~~~~~~g~~~~~P~~~~~dGff~a~l~k~ 527 (528)
||+|||||||+.++|||++|.+||++||+|++.+....... ......| ++++|+. .+||||+|+|+|.
T Consensus 359 GG~LvYsTCs~~~eEne~vv~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~P~~-~~dGFf~a~L~k~ 430 (431)
T PRK14903 359 GGILLYSTCTVTKEENTEVVKRFVYEQKDAEVIDIRDKLEEFEVEGIWDGYG-FLMLPDE-TLTPFYVSVLRKM 430 (431)
T ss_pred CCEEEEEECCCChhhCHHHHHHHHHhCCCcEEecccccccccccccccCCCc-EEECcCC-CCCcEEEEEEEeC
Confidence 99999999999999999999999999999987665321110 0111235 6899986 6899999999985
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-79 Score=649.20 Aligned_cols=424 Identities=33% Similarity=0.461 Sum_probs=368.0
Q ss_pred HHHHHHHHHHHHhCCCchHHHhhcCCCCCCCccchhhhhcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 009708 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDE 140 (528)
Q Consensus 61 R~~A~~~Ly~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lv~gv~~~~~~LD~~i~~~l~~~ 140 (528)
|+.|+|+||+++.++.+++.+... ...+++.|++|+++||+||++++..||++|+++++
T Consensus 1 R~~A~~~L~~~~~~~~~~~~~~~~-------------------~~~l~~~d~~~~~~lv~gv~r~~~~lD~~i~~~~~-- 59 (426)
T TIGR00563 1 RSIAAQALEQLEQGQSLSNLLPPL-------------------QQKVSDQDRALLQELCFGVLRTLSQLDWLIKKLMD-- 59 (426)
T ss_pred CHHHHHHHHHHHcCCchHHHHHhh-------------------hcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHhC--
Confidence 789999999999888776665432 12478899999999999999999999999999997
Q ss_pred CCCCcccHHHHHHHHHHHHHHHh-cCCCCchhHHHHHHHHHHhcCCCchhhHHHHHHHHHhhcCCCCCCCCcCcCCcHHH
Q 009708 141 KTFSSMEPLLLQILRIGFYEIVK-LDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQ 219 (528)
Q Consensus 141 ~~~~~l~~~~~~iLrlg~~el~~-~~~p~~~~inEaV~lak~~~~~~~~~fVN~VL~~~~r~~~~~~~~~~~~~~~~~~~ 219 (528)
|++.+++++++ +||+++||++| +++|++++|||||+|||+|++++.++|||||||+++++.+.. . ..
T Consensus 60 ~~~~~l~~~~~-~L~~~~~e~l~~~~~p~~aainEaVelaK~~~~~~~~~fVNgVLr~i~r~~~~~---~--------~~ 127 (426)
T TIGR00563 60 RPMKGKPRTVH-YLILVGLYQLLYTRIPAHAAVAETVEGAKAIKRKGLKGLVNGVLRRFQREQEEL---L--------AE 127 (426)
T ss_pred CCccccCHHHH-HHHHHHHHHHhcCCCCCEehHHHHHHHHHhcCCccchhhHHHHHHHHhhcchhh---c--------ch
Confidence 78889999877 88888888766 679999999999999999999999999999999999963310 0 12
Q ss_pred HHHHHhhhcChHHHHHHHHHHhCHHHHHHHHHhcCCCCCeEEEEcCCCCCCHHHHHHHHhhcCCCCCceecccCCceEEe
Q 009708 220 ARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRV 299 (528)
Q Consensus 220 ~~~ls~~~s~P~w~~~~~~~~~g~~~~~~~~~~~~~~~~~~~rvn~~k~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~ 299 (528)
.++||++||+|.|++++|.+.|+ +++++++++++++||+++|||+.| .+++++.+.|++.|+ .....++.++.+++
T Consensus 128 ~~~l~~~~s~P~wl~~~~~~~~~-~~~~~~l~~~~~~~~~~~Rvn~~k-~~~~~~~~~l~~~g~--~~~~~~~~~~~~~~ 203 (426)
T TIGR00563 128 FNALDARYLHPEWLVKRLQKAYP-GQWQSICEANNQRPPMWLRINRTK-HSRDEWLALLAEAGM--KGFPHDLAPDAVRL 203 (426)
T ss_pred hHhHHHHcCCCHHHHHHHHHHhH-HHHHHHHHHhCCCCCeEEEEcCCc-CCHHHHHHHHHhcCC--ceeeCCCCCCeEEE
Confidence 45699999999999999999996 457899999999999999999999 689999999999765 34566778888887
Q ss_pred eCCccchhcccccccceeEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHH
Q 009708 300 KTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNET 379 (528)
Q Consensus 300 ~~~~~~~~~~~~~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n 379 (528)
..+. .+...+.|++|++++||.+|++++..+++++|++|||+|||||++|+++++.++ .++|+|+|+++.+++.+++|
T Consensus 204 ~~~~-~~~~~~~~~~G~~~~Qd~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n 281 (426)
T TIGR00563 204 ETPA-AVHALPGFEEGWVTVQDASAQWVATWLAPQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYEN 281 (426)
T ss_pred CCCC-CcccCchhhCCeEEEECHHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHH
Confidence 6432 466778899999999999999999999999999999999999999999999876 68999999999999999999
Q ss_pred HHHcCCCccEEEEcCcccccccc-CCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCC
Q 009708 380 AKLHQVNSVIRTIHADLRTFADN-STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPG 458 (528)
Q Consensus 380 ~~~~g~~~~i~~~~~D~~~~~~~-~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpG 458 (528)
++++|+...+++..+|....... ...+||.|++||||||+|+++++|+++|.++++++.++..+|.++|.+|+++||||
T Consensus 282 ~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~Lkpg 361 (426)
T TIGR00563 282 LKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTG 361 (426)
T ss_pred HHHcCCCeEEEEeccccccccccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999874455577777654321 23579999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEcCCCCchhhHHHHHHHHhhCCCceEecCCCCCCCccccCCceEEEcCCCCCCCceEEEEEEec
Q 009708 459 GVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLVRA 527 (528)
Q Consensus 459 G~LvysTcs~~~~Ene~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~~~dGff~a~l~k~ 527 (528)
|+|||||||++++|||++|.+||++||+|.++... .+.. ...|+++++||.+++||||+|+|+|.
T Consensus 362 G~lvystcs~~~~Ene~~v~~~l~~~~~~~~~~~~--~~~~--~~~~~~~~~P~~~~~dGff~a~l~k~ 426 (426)
T TIGR00563 362 GTLVYATCSVLPEENSEQIKAFLQEHPDFPFEKTG--TPEQ--VRDGGLQILPHAEEGDGFFYAKLIKK 426 (426)
T ss_pred cEEEEEeCCCChhhCHHHHHHHHHhCCCCeeccCC--Cccc--cCCCcEEECCCCCCCCCeEEEEEEeC
Confidence 99999999999999999999999999999765431 1111 23567899999999999999999983
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-79 Score=650.99 Aligned_cols=437 Identities=37% Similarity=0.619 Sum_probs=377.7
Q ss_pred hHHHHHHHHHHHHHhCCCchHHHhhcCCCCCCCccchhhhhcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 009708 59 PHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCH 138 (528)
Q Consensus 59 ~aR~~A~~~Ly~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lv~gv~~~~~~LD~~i~~~l~ 138 (528)
.+|++|+|+||+++.++.+++.+.... ++...+++.|++|+++||+||+|++..||++|+++++
T Consensus 3 ~~R~~A~~~L~~~~~~~~~~~~~l~~~----------------~~~~~l~~~dr~~~~~lv~gvlr~~~~lD~~i~~~~~ 66 (445)
T PRK14904 3 TARELALQVLQELETGERKSDTLLHRM----------------LERSSLERNDRALATELVNGVLRYRLQLDFIISRFYH 66 (445)
T ss_pred hHHHHHHHHHHHHHhcCCCHHHHHHHH----------------HHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 479999999999999998888776542 2233588899999999999999999999999999996
Q ss_pred CCCCCCcccHHHHHHHHHHHHHHHhcC-CCCchhHHHHHHHHHHhcCCCchhhHHHHHHHHHhhcCCCCCCCCcCcCCcH
Q 009708 139 DEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDR 217 (528)
Q Consensus 139 ~~~~~~~l~~~~~~iLrlg~~el~~~~-~p~~~~inEaV~lak~~~~~~~~~fVN~VL~~~~r~~~~~~~~~~~~~~~~~ 217 (528)
|++.++++++++|||+|+|||+|++ +|++++|||+|+|||+|+++.+++|||||||+++++........+. .
T Consensus 67 --~~~~rl~~~~r~iLrla~~ell~~~~~p~~a~vneaVelak~~~~~~~~~fVNgVLr~i~~~~~~~~~~~~~-----~ 139 (445)
T PRK14904 67 --HDLEKAAPVLKNILRLGVYQLLFLDRVPRWAAVNECVKLARKYKGEHMAKLVNGVLRNISPETISLDEWLKG-----M 139 (445)
T ss_pred --CChhhCCHHHHHHHHHHHHHHHhCCCCCCeeeHHHHHHHHHHhCCCccccchHHHHHHHHHhhccccccccc-----c
Confidence 8899999999999999999999986 8999999999999999999999999999999999964221111111 1
Q ss_pred HHHHHHHhhhcChHHHHHHHHHHhCHHHHHHHHHhcCCCCCeEEEEcCCCCCCHHHHHHHHhhcCCCCCceecccCCceE
Q 009708 218 AQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFI 297 (528)
Q Consensus 218 ~~~~~ls~~~s~P~w~~~~~~~~~g~~~~~~~~~~~~~~~~~~~rvn~~k~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~ 297 (528)
....+|+++||+|+||+++|.+.||.+++++++++++++|++++|||+++ .+++++.+.|+..|+. ....++ +. +
T Consensus 140 ~~~~~l~~~~s~P~wl~~~~~~~~g~~~~~~~~~~~~~~~~~~~Rvn~~~-~~~~~~~~~l~~~~~~--~~~~~~-~~-~ 214 (445)
T PRK14904 140 PEAERLSLLYSHPEWLLERWIARYGEERTEAMLSYNNQAPLFGFRINRLK-TTPEKFLAAPADASVT--FEKSGL-PN-F 214 (445)
T ss_pred chHHHHHHHhCCCHHHHHHHHHHhChHHHHHHHHHhCCCCCceeEeCCCC-CCHHHHHHHHHhCCCc--eEEcCc-ce-E
Confidence 23456999999999999999999999999999999999999999999998 6999999999986653 333333 22 3
Q ss_pred EeeCCccchhcccccccceeEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHH
Q 009708 298 RVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILN 377 (528)
Q Consensus 298 ~~~~~~~~~~~~~~~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~ 377 (528)
.+.... ....+.|.+|.+++||+++++++.++++.+|++|||+|||+|++|+++++.+++.++|+|+|+++.+++.++
T Consensus 215 ~~~~~~--~~~~~~~~~G~~~vqd~~s~l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~ 292 (445)
T PRK14904 215 FLSKDF--SLFEPFLKLGLVSVQNPTQALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIR 292 (445)
T ss_pred EEeccc--cccChHHhCcEEEEeCHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHH
Confidence 443321 112367999999999999999999999999999999999999999999998877789999999999999999
Q ss_pred HHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcC
Q 009708 378 ETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKP 457 (528)
Q Consensus 378 ~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~Lkp 457 (528)
+|++++|+++ |+++++|+..+.. ...||+|++||||||+|+++++|+++|..+++++..+...|.++|..++++|||
T Consensus 293 ~~~~~~g~~~-v~~~~~Da~~~~~--~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkp 369 (445)
T PRK14904 293 SHASALGITI-IETIEGDARSFSP--EEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKP 369 (445)
T ss_pred HHHHHhCCCe-EEEEeCccccccc--CCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999975 8999999987653 357999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEcCCCCchhhHHHHHHHHhhCCCceEecCCCCCCCcc---ccCCceEEEcCCCC-CCCceEEEEEEecC
Q 009708 458 GGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDF---VTKHGFFFSDPIKH-SLDGAFAARLVRAF 528 (528)
Q Consensus 458 GG~LvysTcs~~~~Ene~~v~~~l~~~~~~~~~~~~~~~~~~~---~~~~g~~~~~P~~~-~~dGff~a~l~k~~ 528 (528)
||+|||+|||++++|||++|.+||++|++|++......++..+ ....|+++++|+.+ ++||||+|+|+|..
T Consensus 370 gG~lvystcs~~~~Ene~~v~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~P~~~~~~dGfF~a~l~k~~ 444 (445)
T PRK14904 370 GGVLVYATCSIEPEENELQIEAFLQRHPEFSAEPSPGSLPEPFHEVAHPKGAILTLPGEHEGFDGGFAQRLRKNA 444 (445)
T ss_pred CcEEEEEeCCCChhhHHHHHHHHHHhCCCCEEeccccccccccccccCCCCcEEECCCCCCCCCcEEEEEEEecC
Confidence 9999999999999999999999999999998766543332211 23467889999987 88999999999963
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-78 Score=649.95 Aligned_cols=437 Identities=36% Similarity=0.613 Sum_probs=387.1
Q ss_pred hHHHHHHHHHHHHHhCCCchHHHhhcCCCCCCCccchhhhhcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 009708 59 PHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCH 138 (528)
Q Consensus 59 ~aR~~A~~~Ly~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lv~gv~~~~~~LD~~i~~~l~ 138 (528)
.+|++|+|+||+++.++.+++.++... ++...+++.|++|+++||+|+++++..||++|+++++
T Consensus 4 ~~R~~A~~~L~~~~~~~~~~~~~l~~~----------------~~~~~l~~~d~~~~~~lv~g~lr~~~~ld~~i~~~~~ 67 (444)
T PRK14902 4 NARELALEVLIKVENNGAYSNIALNKV----------------LKKSELSDKDKALLTELVYGTIQRKLTLDYYLAPFIK 67 (444)
T ss_pred cHHHHHHHHHHHHHhcCCCHHHHHHHH----------------HHhcCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHhh
Confidence 479999999999999888887776542 2233588899999999999999999999999999997
Q ss_pred CCCCCCcccHHHHHHHHHHHHHHHhcC-CCCchhHHHHHHHHHHhcCCCchhhHHHHHHHHHhhcCCCCCCCCcCcCCcH
Q 009708 139 DEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDR 217 (528)
Q Consensus 139 ~~~~~~~l~~~~~~iLrlg~~el~~~~-~p~~~~inEaV~lak~~~~~~~~~fVN~VL~~~~r~~~~~~~~~~~~~~~~~ 217 (528)
+ ++++++++++|||+|+|||+|++ +|++++|||+|++||.|+++++++||||||++++++... ..+.. .
T Consensus 68 --~-~~~l~~~~r~iLrla~~el~~~~~~p~~~~ineav~lak~~~~~~~~~fVNaVL~~i~~~~~~---~~~~~----~ 137 (444)
T PRK14902 68 --K-RKKLDPWVRNLLRMSLYQLLYLDKVPDHAAVNEAVEIAKKRGHKGIAKFVNGVLRNILREGLP---DIDEI----K 137 (444)
T ss_pred --h-hhhCCHHHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHHhCCCchhHHHHHHHHHHhhcccc---ccccc----c
Confidence 5 89999999999999999999986 999999999999999999999999999999999985311 11111 1
Q ss_pred HHHHHHHhhhcChHHHHHHHHHHhCHHHHHHHHHhcCCCCCeEEEEcCCCCCCHHHHHHHHhhcCCCCCceecccCCceE
Q 009708 218 AQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFI 297 (528)
Q Consensus 218 ~~~~~ls~~~s~P~w~~~~~~~~~g~~~~~~~~~~~~~~~~~~~rvn~~k~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~ 297 (528)
....+++++||+|.|++++|.+.||.+++++++++++++|++++|+|+.| .+++++.+.|++.|+ .....++.++.+
T Consensus 138 ~~~~~~~~~~~~P~w~~~~~~~~~g~~~~~~~l~~~~~~~~~~~Rvn~~k-~~~~~~~~~l~~~g~--~~~~~~~~~~~~ 214 (444)
T PRK14902 138 DPVKRLSIKYSHPVWLVKRWIDQYGEEKAEKILESLNEPPKASIRVNTLK-ISVEELIEKLEEEGY--EVEESLLSPEAL 214 (444)
T ss_pred CHHHHHHHHhCChHHHHHHHHHHhCHHHHHHHHHHcCCCCCeEEEEcCCC-CCHHHHHHHHHHcCc--eeEEcCCCCCeE
Confidence 23567999999999999999999999999999999999999999999998 689999999999765 455677888888
Q ss_pred EeeCCccchhcccccccceeEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHH
Q 009708 298 RVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILN 377 (528)
Q Consensus 298 ~~~~~~~~~~~~~~~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~ 377 (528)
.+.. ..+..++.|++|.+++||.++++++.++++++|++|||+|||||++|+++++.+++.++|+|+|+++.+++.++
T Consensus 215 ~~~~--~~~~~~~~~~~G~~~~qd~~s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~ 292 (444)
T PRK14902 215 VIEK--GNIAGTDLFKDGLITIQDESSMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIE 292 (444)
T ss_pred EEeC--CCcccChHHhCceEEEEChHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHH
Confidence 8875 34677889999999999999999999999999999999999999999999998867789999999999999999
Q ss_pred HHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcC
Q 009708 378 ETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKP 457 (528)
Q Consensus 378 ~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~Lkp 457 (528)
+|++++|+++ ++++++|+..+.....++||.|++||||||+|+++++|+++|.+++.++..+..+|.++|..++++|||
T Consensus 293 ~n~~~~g~~~-v~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~Lkp 371 (444)
T PRK14902 293 ENAKRLGLTN-IETKALDARKVHEKFAEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKK 371 (444)
T ss_pred HHHHHcCCCe-EEEEeCCcccccchhcccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999987 999999998764333367999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEcCCCCchhhHHHHHHHHhhCCCceEecCCCCCCCccc--cCCceEEEcCCCCCCCceEEEEEEec
Q 009708 458 GGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFV--TKHGFFFSDPIKHSLDGAFAARLVRA 527 (528)
Q Consensus 458 GG~LvysTcs~~~~Ene~~v~~~l~~~~~~~~~~~~~~~~~~~~--~~~g~~~~~P~~~~~dGff~a~l~k~ 527 (528)
||+|||+|||++++||+.++.+|+++|++|++.++....+.... ...|+++++||.+++||||+|+|+|.
T Consensus 372 GG~lvystcs~~~~Ene~vv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGfF~a~l~k~ 443 (444)
T PRK14902 372 GGILVYSTCTIEKEENEEVIEAFLEEHPEFELVPLQHEKPDELVYEVKDGYLQILPNDYGTDGFFIAKLRKK 443 (444)
T ss_pred CCEEEEEcCCCChhhhHHHHHHHHHhCCCcEEecccccccccccccccCCeEEECCCCCCCCCeEEEEEEEC
Confidence 99999999999999999999999999999998876543222111 23578899999999999999999985
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-78 Score=645.32 Aligned_cols=424 Identities=32% Similarity=0.467 Sum_probs=374.9
Q ss_pred hHHHHHHHHHHHHHhCCCchHHHhhcCCCCCCCccchhhhhcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 009708 59 PHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCH 138 (528)
Q Consensus 59 ~aR~~A~~~Ly~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lv~gv~~~~~~LD~~i~~~l~ 138 (528)
++|++|+|+||+++.++.+++.++... ++ .+++.|++|+++||+||++|+..||++|.++++
T Consensus 3 ~~R~~a~~~L~~~~~~~~~~~~~l~~~----------------~~--~l~~~d~~~~~~lv~gv~r~~~~lD~~i~~~~~ 64 (427)
T PRK10901 3 NLRALAAAAILQVVDQGQSLSAALPAL----------------QQ--KVSDKDRALLQELCYGVLRRLPRLEWLIAQLLA 64 (427)
T ss_pred hHHHHHHHHHHHHHHcCCcHHHHHHHH----------------Hh--hCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHhC
Confidence 479999999999999999888776542 11 477899999999999999999999999999997
Q ss_pred CCCCCCcccHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCCchhhHHHHHHHHHhhcCCCCCCCCcCcCCcHH
Q 009708 139 DEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRA 218 (528)
Q Consensus 139 ~~~~~~~l~~~~~~iLrlg~~el~~~~~p~~~~inEaV~lak~~~~~~~~~fVN~VL~~~~r~~~~~~~~~~~~~~~~~~ 218 (528)
|++.++++++++|||+|+|||+|+++|++++|||+|+|||+|++++.++|||||||++++..+. .+..
T Consensus 65 --~~~~~l~~~~r~iLrla~yell~~~iP~~a~vneaVelak~~~~~~~~~fVNaVLr~i~~~~~~----~~~~------ 132 (427)
T PRK10901 65 --KPLKGKQRIVHALLLVGLYQLLYTRIPAHAAVDETVEAAKALKRPWAKGLVNAVLRRFQREQEE----LLAE------ 132 (427)
T ss_pred --CCccccCHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHhcCCccchhhHHHHHHHhhhhhhh----hhhh------
Confidence 7889999999999999999999999999999999999999999999999999999999986331 1110
Q ss_pred HHHHHHhhhcChHHHHHHHHHHhCHHHHHHHHHhcCCCCCeEEEEcCCCCCCHHHHHHHHhhcCCCCCceecccCCceEE
Q 009708 219 QARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIR 298 (528)
Q Consensus 219 ~~~~ls~~~s~P~w~~~~~~~~~g~~~~~~~~~~~~~~~~~~~rvn~~k~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~ 298 (528)
....+|++||+|+||+++|.+.|| +++++++++++++||+++|||++| .+++++.+.|++.|+ ..+..++.++.++
T Consensus 133 ~~~~~~~~~s~P~wl~~~~~~~~~-~~~~~~~~~~~~~~~~~~Rvn~~k-~~~~~~~~~l~~~~~--~~~~~~~~~~~~~ 208 (427)
T PRK10901 133 LQADPVARYNHPSWLIKRLKKAYP-EQWQAILAANNQRPPMWLRVNRRH-HSRDAYLALLAEAGI--EAFPHAVGPDAIR 208 (427)
T ss_pred hhhchHhHhcCCHHHHHHHHHHhH-HHHHHHHHHcCCCCCeEEEEcCCC-CCHHHHHHHHHhCCC--ceeecCCCCCeEE
Confidence 123579999999999999999997 568899999999999999999999 689999999998665 3456678888888
Q ss_pred eeCCccchhcccccccceeEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHH
Q 009708 299 VKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNE 378 (528)
Q Consensus 299 ~~~~~~~~~~~~~~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~ 378 (528)
+..+. .+..++.|++|++++||.+|++++.++++++|++|||+|||||++|+++++.+++ ++|+|+|+++.+++.+++
T Consensus 209 ~~~~~-~~~~~~~~~~G~~~iQd~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~s~~~l~~~~~ 286 (427)
T PRK10901 209 LETPV-PVHQLPGFAEGWVSVQDAAAQLAATLLAPQNGERVLDACAAPGGKTAHILELAPQ-AQVVALDIDAQRLERVRE 286 (427)
T ss_pred ECCCC-CcccCchhhCceEEEECHHHHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCC-CEEEEEeCCHHHHHHHHH
Confidence 86432 3566788999999999999999999999999999999999999999999998653 799999999999999999
Q ss_pred HHHHcCCCccEEEEcCcccccccc-CCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcC
Q 009708 379 TAKLHQVNSVIRTIHADLRTFADN-STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKP 457 (528)
Q Consensus 379 n~~~~g~~~~i~~~~~D~~~~~~~-~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~Lkp 457 (528)
|++++|+. ++++++|+..+... ..++||.|++||||||+|+++++|+++|..++.++.++...|.++|..+.++|||
T Consensus 287 n~~~~g~~--~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~Lkp 364 (427)
T PRK10901 287 NLQRLGLK--ATVIVGDARDPAQWWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKP 364 (427)
T ss_pred HHHHcCCC--eEEEEcCcccchhhcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999986 57899999875432 1357999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEcCCCCchhhHHHHHHHHhhCCCceEecCCCCCCCccccCCceEEEcCCCCCCCceEEEEEEec
Q 009708 458 GGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLVRA 527 (528)
Q Consensus 458 GG~LvysTcs~~~~Ene~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~~~dGff~a~l~k~ 527 (528)
||+|||+|||++++||+++|..|+++|++|++++... ...+.++++||.+++||||+|+|+|.
T Consensus 365 GG~lvystcs~~~~Ene~~v~~~l~~~~~~~~~~~~~-------~~~~~~~~~P~~~~~dGff~a~l~k~ 427 (427)
T PRK10901 365 GGTLLYATCSILPEENEQQIKAFLARHPDAELLDTGT-------PQQPGRQLLPGEEDGDGFFYALLIKR 427 (427)
T ss_pred CCEEEEEeCCCChhhCHHHHHHHHHhCCCCEEecCCC-------CCCCceEECCCCCCCCCeEEEEEEEC
Confidence 9999999999999999999999999999998766321 11233689999999999999999984
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-63 Score=516.92 Aligned_cols=346 Identities=39% Similarity=0.573 Sum_probs=296.2
Q ss_pred CCCchhHHHHHHHHHH-hcCCCchhhHHHHHHHHHhhcCCCCCCCCcCcCCcHHHHHHHHhhhcChHHHHHHHHHHhCHH
Q 009708 166 MPPYAVVDENVRLAKV-ALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQE 244 (528)
Q Consensus 166 ~p~~~~inEaV~lak~-~~~~~~~~fVN~VL~~~~r~~~~~~~~~~~~~~~~~~~~~~ls~~~s~P~w~~~~~~~~~g~~ 244 (528)
+|++++++++|+.|+. +......+|+|++|+++.+........ .. .-...|++|+|++++|.+.||.+
T Consensus 1 ~~~~a~~~~~~~~a~~~~~~~~~~~~~n~~lr~~~r~~~~~~~~---~~--------~~~~~~~~p~w~~~~~~~~~~~~ 69 (355)
T COG0144 1 VPPHAAVDETVEAAKERLGKDRAAKFVNAVLRRLERSEEALLEE---IL--------RPAFRYSHPEWLVEKLPDALGED 69 (355)
T ss_pred CCcHHHHHHHHHHHHhcccchhhhhhhhhhHhhhhhccchhhhh---hh--------cccccccCcHHHHHHHHHHcChH
Confidence 5889999999999995 466778999999999999865432111 00 00157999999999999999998
Q ss_pred HHHHHHHhcCCCCCeEEEEcCCCCCCHHHHHHHHhhcCCCCCceecccCCceEEeeCCccchhcccccccceeEeecchH
Q 009708 245 EAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESA 324 (528)
Q Consensus 245 ~~~~~~~~~~~~~~~~~rvn~~k~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~Qd~~s 324 (528)
++++++++++.+++.++|||+++ .+++++.+.|++.++.. ......+..+++..+. ++..++.|.+|+|++||.+|
T Consensus 70 ~~~~~~~a~~~~~~~~~Rvn~lk-~~~~~~~~~l~~~~~~~--~~~~~~~~~~~i~~~~-~~~~~~~~~~G~~~vQd~sS 145 (355)
T COG0144 70 EAEAIAAALLRPPPRSLRVNTLK-ADVEELLEALEEAGVLD--EKPWVLDEVLRIEASG-PIGRLPEFAEGLIYVQDEAS 145 (355)
T ss_pred HHHHHHHHcCCCCCeeEEEcCcc-CCHHHHHHHHhhccccc--ccCCccccEEEecCCC-CcccChhhhceEEEEcCHHH
Confidence 89999999999999999999999 79999999999865532 2224455667766543 45667789999999999999
Q ss_pred HHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcE-EEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC
Q 009708 325 GLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGL-VYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS 403 (528)
Q Consensus 325 ~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~-v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~ 403 (528)
++++.+++++||++|||+||||||||+|+|++|.+.+. |+|+|+++.+++.+++|++++|+.| +.+++.|...+....
T Consensus 146 ~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~n-v~~~~~d~~~~~~~~ 224 (355)
T COG0144 146 QLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRN-VIVVNKDARRLAELL 224 (355)
T ss_pred HHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCc-eEEEecccccccccc
Confidence 99999999999999999999999999999999988554 5999999999999999999999998 778888887665433
Q ss_pred C--CCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHHH
Q 009708 404 T--VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFL 481 (528)
Q Consensus 404 ~--~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~l 481 (528)
. .+||.||+||||||+|+++|+||++|+++..++..++.+|.+||.+|+++|||||+|||||||++++|||++|.+||
T Consensus 225 ~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE~vV~~~L 304 (355)
T COG0144 225 PGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENEEVVERFL 304 (355)
T ss_pred cccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcCHHHHHHHH
Confidence 2 35999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCceEecCCCCCCCcc----ccCCceEEEcCCCCCCCceEEEEEEec
Q 009708 482 LRHPEFSIDPADGLVPSDF----VTKHGFFFSDPIKHSLDGAFAARLVRA 527 (528)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~----~~~~g~~~~~P~~~~~dGff~a~l~k~ 527 (528)
+++++|+++++...+.... ....++++++||.|++||||+|+|+|.
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~p~~~~~dGFFia~l~k~ 354 (355)
T COG0144 305 ERHPDFELEPVRLPWGPLFEGLGSELGKTRRLYPHVHGTDGFFIAKLRKK 354 (355)
T ss_pred HhCCCceeecccccccccccccccccCCeEEECCCCCCCCCeEEEEEEeC
Confidence 9999999988743322211 123446899999998899999999985
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-59 Score=494.09 Aligned_cols=296 Identities=27% Similarity=0.357 Sum_probs=263.2
Q ss_pred cChHHHHHHHHHHhCH-HHHHHHHHhcCCCCCeEEEEcCCCCCCHHHHHHHHhhcCCCCCceecccCCceEEeeCC---c
Q 009708 228 SHPVWMVRRWTKYLGQ-EEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTG---L 303 (528)
Q Consensus 228 s~P~w~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~rvn~~k~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~---~ 303 (528)
.+|+||+++|.+.||. +++++++++++++++.+||||++| .+++++.+.|++.|+ ..+..+++++.+.+..+ .
T Consensus 3 ~lP~~fv~~~~~~lg~~ee~~~~l~a~~~~~~~~lRvN~lK-~~~~~~~~~L~~~g~--~~~~~p~~~~g~~~~~~~~~~ 79 (470)
T PRK11933 3 YLPDAFLTQMREAMPSHLSMDDFIAACQRPLRRSIRVNTLK-ISVADFLQLMAPYGW--TLTPIPWCEEGFWIERDDEDA 79 (470)
T ss_pred cChHHHHHHHHHHhCCcHHHHHHHHHcCCCCCeEEEEcCCc-CCHHHHHHHHHhCCC--ceeECCCCCceEEEecCcccc
Confidence 4899999999999997 689999999999999999999999 799999999988665 45667888888887642 1
Q ss_pred cchhcccccccceeEeecchHHHHHHhc--CCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHH
Q 009708 304 QNVIQAGLLKEGLCAVQDESAGLVVAVV--DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAK 381 (528)
Q Consensus 304 ~~~~~~~~~~~G~~~~Qd~~s~l~~~~l--~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~ 381 (528)
..+..++.|..|.|++||++|++++.++ ++++|++|||+||||||||+++|++|++.|.|+|+|+++.|++.+++|++
T Consensus 80 ~~~~~~~~~~~G~~yvQd~sS~l~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~ 159 (470)
T PRK11933 80 LPLGNTAEHLSGLFYIQEASSMLPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANIS 159 (470)
T ss_pred CCcccChHHHCCcEEEECHHHHHHHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHH
Confidence 1356678899999999999999999998 88999999999999999999999999989999999999999999999999
Q ss_pred HcCCCccEEEEcCccccccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEE
Q 009708 382 LHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVL 461 (528)
Q Consensus 382 ~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~L 461 (528)
++|+.+ +.+.+.|...+....+..||.||+|+||||+|+++++|+++|.++++++.+++.+|++||.+|+++|||||+|
T Consensus 160 r~G~~n-v~v~~~D~~~~~~~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~L 238 (470)
T PRK11933 160 RCGVSN-VALTHFDGRVFGAALPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTL 238 (470)
T ss_pred HcCCCe-EEEEeCchhhhhhhchhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEE
Confidence 999987 8889999987655445679999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCchhhHHHHHHHHhhCCCc-eEecCCCCCCC--ccccCCceEEEcCCCCCCCceEEEEEEec
Q 009708 462 VYSTCSIDPEENEERVEAFLLRHPEF-SIDPADGLVPS--DFVTKHGFFFSDPIKHSLDGAFAARLVRA 527 (528)
Q Consensus 462 vysTcs~~~~Ene~~v~~~l~~~~~~-~~~~~~~~~~~--~~~~~~g~~~~~P~~~~~dGff~a~l~k~ 527 (528)
||||||+.++|||++|++||++|+++ +++++...++. ......|++|++||.+++||||+|+|+|.
T Consensus 239 VYSTCT~~~eENE~vV~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGfFiA~lrk~ 307 (470)
T PRK11933 239 VYSTCTLNREENQAVCLWLKETYPDAVEFEPLGDLFPGAEKALTEEGFLHVFPQIYDSEGFFVARLRKT 307 (470)
T ss_pred EEECCCCCHHHHHHHHHHHHHHCCCcEEeccccccccccccccCCCCeEEECCCCCCCcceeeEEEEec
Confidence 99999999999999999999999984 45554321111 11234678999999999999999999985
|
|
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-56 Score=448.22 Aligned_cols=421 Identities=32% Similarity=0.379 Sum_probs=338.5
Q ss_pred hcCCCCCCCccchhhhhcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHH
Q 009708 83 KKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIV 162 (528)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lv~gv~~~~~~LD~~i~~~l~~~~~~~~l~~~~~~iLrlg~~el~ 162 (528)
+..-++.++.+.+...+-++...++++.+... .+-+++.++++...+..+..-..+.-......+.+..+++ +..
T Consensus 11 ~~~~~~~~~~e~~~~~~d~~~~~d~~~~~~~~-~e~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~l~lp~~~----~~~ 85 (460)
T KOG1122|consen 11 EYLPGSGSNPEVEDYFTDDFRDDDLDDIDLKL-IERKSRKLRKRESLEASEAEEELNTNTFEEGDPLLLPTLE----EEE 85 (460)
T ss_pred ccCcCCCCCccchhhhccccCccchhhhhhhh-hhhHHHHHHHhhcccchhhHHHHhhccccccccccCcccc----ccc
Confidence 44445556666555555555566777788777 8999999999998887777654432233445555555555 444
Q ss_pred hcC-CCCchhHHHHHHHHHHhcCCCchhhHHHHHHHHHhhcCCCCCCCCcCcCCcHHHHHHHHhhhcChHHHHHHHHHHh
Q 009708 163 KLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYL 241 (528)
Q Consensus 163 ~~~-~p~~~~inEaV~lak~~~~~~~~~fVN~VL~~~~r~~~~~~~~~~~~~~~~~~~~~~ls~~~s~P~w~~~~~~~~~ 241 (528)
.+. +| +.+.|.+...-..+....|.|.....-.+.. .-..-...++..|++-..+.+.+.+.+
T Consensus 86 ~~~~~P----~L~~v~~~~~~~~~~l~dfk~l~~~~~~~~~------------~~~~l~~~~~~~y~y~~~l~~~~~e~~ 149 (460)
T KOG1122|consen 86 EKDSVP----DLQNVDLRIVELVPVLGDFKNLKEPGRLRSE------------YCGQLKKDGAHYYAYGVFLAEKLMELF 149 (460)
T ss_pred ccccCC----ccchhhHHhhhhhhhhcchhcccccccchhh------------HHHHHHhcccceechHHHHHHHhcccc
Confidence 444 44 5566666665544444455554332221110 001123457888999999999999999
Q ss_pred CHHHHHHHHHhcCCCCCeEEEEcCCCCCCHHHHHHHHhhcCCCCCceecccCCceEEeeCCccchhcccccccceeEeec
Q 009708 242 GQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQD 321 (528)
Q Consensus 242 g~~~~~~~~~~~~~~~~~~~rvn~~k~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~Qd 321 (528)
...++.++++++..++|+++|.||+| +-+.+++..|...|+. ......|...++++..+..++-.++.|..|++.+|+
T Consensus 150 ~~~ev~~~~e~~~~~rp~tir~ntlk-~~rrd~~~~L~nrgv~-~~pl~~ws~vgl~v~~s~vpigat~e~lag~~~LQ~ 227 (460)
T KOG1122|consen 150 PLVEVYEFLEANEKPRPVTIRTNTLK-TRRRDLAVELSNRGVN-LDPLGKWSKVGLVVFDSVVPIGATPEYLAGHYMLQN 227 (460)
T ss_pred cHHHHHHHHHhhcCCCCeeEEecccc-hhhhhHHHHHHhcccC-cccccccccceEEEecCccccCCchhhcccceeecc
Confidence 99999999999999999999999998 5677788888776653 224556778888888777677788999999999999
Q ss_pred chHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccc
Q 009708 322 ESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD 401 (528)
Q Consensus 322 ~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~ 401 (528)
.+|.+++.+++|+||++||||||+|||||+++|++|+++|.|+|.|.+..++..++.|+.++|++| ..+++.|...++.
T Consensus 228 ~sS~Lpv~aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~n-tiv~n~D~~ef~~ 306 (460)
T KOG1122|consen 228 ASSFLPVMALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTN-TIVSNYDGREFPE 306 (460)
T ss_pred CcccceeeecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCc-eEEEccCcccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999997 6688899988763
Q ss_pred c-CCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHH
Q 009708 402 N-STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAF 480 (528)
Q Consensus 402 ~-~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~ 480 (528)
. .+.+||+||+|+||||+|++.|.+.++|.++..++.++..+|++||.+|.+++++||+|||||||+.++|||.+|.++
T Consensus 307 ~~~~~~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~ENE~vV~ya 386 (460)
T KOG1122|consen 307 KEFPGSFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVEENEAVVDYA 386 (460)
T ss_pred cccCcccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchhhhHHHHHHH
Confidence 3 345899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCceEecCCCCCCCcc-c-------cCCceEEEcCCCCCCCceEEEEEEec
Q 009708 481 LLRHPEFSIDPADGLVPSDF-V-------TKHGFFFSDPIKHSLDGAFAARLVRA 527 (528)
Q Consensus 481 l~~~~~~~~~~~~~~~~~~~-~-------~~~g~~~~~P~~~~~dGff~a~l~k~ 527 (528)
|.++|.+++.|..+.+.... + +...+.|++||.|.+||||+|+|+|.
T Consensus 387 L~K~p~~kL~p~~~~iG~~G~~~~~~~~psl~~~~r~yPh~hnmdgffvaKl~k~ 441 (460)
T KOG1122|consen 387 LKKRPEVKLVPTGLDIGGEGRFRGGRFHPSLKLTRRFYPHVHNMDGFFVAKLKKA 441 (460)
T ss_pred HHhCCceEeccccccCCCCCcccCcccCcchhheeeecCcccCCchHHHHHHHhh
Confidence 99999999999877665433 1 22344689999999999999999873
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-54 Score=434.13 Aligned_cols=273 Identities=41% Similarity=0.636 Sum_probs=238.0
Q ss_pred HHHhcCCCCCeEEEEcCCCCCCHHHHHHHHhhcCCCCCceecccCCceEE-eeCCccchhcccccccceeEeecchHHHH
Q 009708 249 LMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIR-VKTGLQNVIQAGLLKEGLCAVQDESAGLV 327 (528)
Q Consensus 249 ~~~~~~~~~~~~~rvn~~k~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~G~~~~Qd~~s~l~ 327 (528)
||+++|.+||+++|||++| .+++++.+.|++.|+ ..+..++.++.++ +......+..++.|++|++++||.+|+++
T Consensus 1 il~~~n~~~~~~iRvN~~k-~~~~~~~~~L~~~g~--~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~G~~~vQd~sS~l~ 77 (283)
T PF01189_consen 1 ILEANNCPPPVTIRVNTLK-ISREELLEELEEEGI--QLEPIPRSPDALRVIGKSPYSICSLPEFKNGLFYVQDESSQLV 77 (283)
T ss_dssp HHHHCTS--GEEEEE-TTT-SSHHHHHHHHHHTTH--EEEEETSTTCEEEEEEECSSCGGGSHHHHTTSEEEHHHHHHHH
T ss_pred CccccCCCCCeEEEECcCc-CCHHHHHHHHhhccc--ceEEcccccchhccccccccchhhchhhhCCcEEecccccccc
Confidence 6889999999999999999 799999999999775 4556666777733 22223356778899999999999999999
Q ss_pred HHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC-CCC
Q 009708 328 VAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS-TVK 406 (528)
Q Consensus 328 ~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~-~~~ 406 (528)
+.++.+++|+.|||+||||||||+++++.|.+.|.|+|+|+++.++..++.|++++|+.+ +.+++.|.+...... ...
T Consensus 78 ~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~-v~~~~~D~~~~~~~~~~~~ 156 (283)
T PF01189_consen 78 ALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFN-VIVINADARKLDPKKPESK 156 (283)
T ss_dssp HHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SS-EEEEESHHHHHHHHHHTTT
T ss_pred cccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCce-EEEEeeccccccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999997 777779998874433 346
Q ss_pred CCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccC----cCCCEEEEEcCCCCchhhHHHHHHHHh
Q 009708 407 CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLV----KPGGVLVYSTCSIDPEENEERVEAFLL 482 (528)
Q Consensus 407 fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~L----kpGG~LvysTcs~~~~Ene~~v~~~l~ 482 (528)
||.|++|+||||+|+++++|+++|.++++++..++.+|.++|++|++++ ||||+|||||||++++|||++|+.||+
T Consensus 157 fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eENE~vV~~fl~ 236 (283)
T PF01189_consen 157 FDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEENEEVVEKFLK 236 (283)
T ss_dssp EEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGGTHHHHHHHHH
T ss_pred cchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred hCCCceEecCCCCCCCccc----cCCceEEEcCCCCCCCceEEEEEE
Q 009708 483 RHPEFSIDPADGLVPSDFV----TKHGFFFSDPIKHSLDGAFAARLV 525 (528)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~----~~~g~~~~~P~~~~~dGff~a~l~ 525 (528)
+||+|+++++......... ...++++++||.+++||||+|+|+
T Consensus 237 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGFFiA~lr 283 (283)
T PF01189_consen 237 RHPDFELVPIPLPEPPPGFKSYPIGEGCLRILPHRHGTDGFFIAKLR 283 (283)
T ss_dssp HSTSEEEECCESSTCEEESSGGCTGGGSEEESTTTSSSSSEEEEEEE
T ss_pred hCCCcEEEeccccccccccccccCCCCEEEeCCCCCCCCCEEEEEeC
Confidence 9999999887654433211 346789999999999999999996
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-49 Score=394.49 Aligned_cols=260 Identities=32% Similarity=0.458 Sum_probs=224.1
Q ss_pred EEEcCCCCCCHHHHHHHHhhcCCCCCceecccCCceEEeeCCccchhcccccccceeEeecchHHHHHHhcCCCCCCeEE
Q 009708 261 LRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 340 (528)
Q Consensus 261 ~rvn~~k~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~Qd~~s~l~~~~l~~~~g~~VL 340 (528)
+|||++| .+++++++.|++.|+.+ .... .+..+++..+...+..++.|.+|++++||.+|++++.++++++|++||
T Consensus 1 ~RvN~lk-~~~~~~~~~l~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~G~~~~qd~~s~~~~~~l~~~~g~~VL 76 (264)
T TIGR00446 1 IRVNTLK-ISVADLLQRLENRGVTL--IPWC-EEGFFEVNESPLPIGSTPEYLSGLYYIQEASSMIPPLALEPDPPERVL 76 (264)
T ss_pred CeecCCC-CCHHHHHHHHHhCCCce--eecC-CCceEEEeCCCCCcccChhHhCCeEEEECHHHHHHHHHhCCCCcCEEE
Confidence 5999999 79999999999977643 2222 445666653322366778899999999999999999999999999999
Q ss_pred EeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcCCCCCCc
Q 009708 341 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLG 420 (528)
Q Consensus 341 Dl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G 420 (528)
|+|||||++|+++++++++.+.|+|+|+++.+++.+++|++++|+.+ +++++.|+..+... ...||+|++||||||+|
T Consensus 77 Dl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~-v~~~~~D~~~~~~~-~~~fD~Vl~D~Pcsg~G 154 (264)
T TIGR00446 77 DMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLN-VAVTNFDGRVFGAA-VPKFDAILLDAPCSGEG 154 (264)
T ss_pred EECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCc-EEEecCCHHHhhhh-ccCCCEEEEcCCCCCCc
Confidence 99999999999999998878899999999999999999999999976 89999998876432 34699999999999999
Q ss_pred cccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHHHhhCCCceEecCCCC-CCCc
Q 009708 421 VLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGL-VPSD 499 (528)
Q Consensus 421 ~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~l~~~~~~~~~~~~~~-~~~~ 499 (528)
+++++|+.+|.++.+++..+..+|.++|++++++|||||+|||||||++++|||++|.+||++|+++.+.+.... .+..
T Consensus 155 ~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~Ene~vv~~~l~~~~~~~~~~~~~~~~~~~ 234 (264)
T TIGR00446 155 VIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPEENEAVVDYLLEKRPDVVEELPKGDEFFGA 234 (264)
T ss_pred ccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChHHHHHHHHHHHHhCCCcEEeccCCcccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999886632211 1110
Q ss_pred ---cccCCceEEEcCCCCCCCceEEEEEEe
Q 009708 500 ---FVTKHGFFFSDPIKHSLDGAFAARLVR 526 (528)
Q Consensus 500 ---~~~~~g~~~~~P~~~~~dGff~a~l~k 526 (528)
.....++++++||.|++||||+|+|+|
T Consensus 235 ~~~~~~~~~~~r~~P~~~~~dGfF~a~l~k 264 (264)
T TIGR00446 235 NKGKEEVKGALRVFPQIYDCEGFFVAKLRK 264 (264)
T ss_pred cccccccCCeEEECCCCCCCCcEEEEEEEC
Confidence 112456789999999999999999986
|
|
| >KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-30 Score=257.54 Aligned_cols=282 Identities=26% Similarity=0.378 Sum_probs=219.7
Q ss_pred CHHHHHHHHHhcCCCCCeEEEEcCCCCCCHHHHHHHHhhcCCCC-------CceecccCCceEEeeCCccchhccccccc
Q 009708 242 GQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV-------PHELSLHLDEFIRVKTGLQNVIQAGLLKE 314 (528)
Q Consensus 242 g~~~~~~~~~~~~~~~~~~~rvn~~k~~~~~~~~~~L~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (528)
+.+.++++....+.++|.++|+||++ .+.++....|..++... .+-.+++.+..+.+.. ...+...++|+.
T Consensus 115 ~~~~~~~l~~t~~~~~pr~vRINtlk-~~~~e~~~~L~~e~~~~~~~l~p~~~~~D~~~~~ll~~~~-~n~i~~~~ly~~ 192 (413)
T KOG2360|consen 115 KVKSLRELKLTMKIPLPRYVRINTLK-GTTDEALDYLDYEKWKMITELKPDEFYVDPHVENLIIFPP-SNFIVEHELYKN 192 (413)
T ss_pred hHHHHHHhhccCCCCCceeEEeeccc-CchhhhhhhhhhhhhhhhhhcCCcceeccccchhhcccCC-Ccceeecccccc
Confidence 34455555543446889999999999 57777777777644321 0112333344444432 223556789999
Q ss_pred ceeEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcC
Q 009708 315 GLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA 394 (528)
Q Consensus 315 G~~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~ 394 (528)
|.+++||.+|.+++.++++.+|+.|+|.||+||.+|+|+|..|.+.|+|+|+|.++.+.+.++..+...|+++ ++.+.+
T Consensus 193 g~~ilqd~asclpA~ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~-~~~~~~ 271 (413)
T KOG2360|consen 193 GKFILQDKASCLPAHLLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSI-VESVEG 271 (413)
T ss_pred CceEEechhhcchhhhcCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCc-cccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999986 777799
Q ss_pred ccccccc-cCCCCCCEEEEcCCCCCCccccCCchhh--ccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCch
Q 009708 395 DLRTFAD-NSTVKCDKVLLDAPCSGLGVLSKRADLR--WNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPE 471 (528)
Q Consensus 395 D~~~~~~-~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~--~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~ 471 (528)
|+..... ..-...-.||+||+|||+|+..+.-... -..+++.++.+...|..++++|+.+-.. -.++|||||++.+
T Consensus 272 df~~t~~~~~~~~v~~iL~DpscSgSgm~~r~~~~~~~e~~~~~rL~~L~~fq~~~~~hal~fp~~-k~vvystcs~~re 350 (413)
T KOG2360|consen 272 DFLNTATPEKFRDVTYILVDPSCSGSGMVSRQDEDPGAETESPERLENLQSFQIRILKHALTFPNL-KRLVYSTCSLHRE 350 (413)
T ss_pred cccCCCCcccccceeEEEeCCCCCCCccccceeeccCCCcccHHHHHHHHHHHHHHHHHHhcCCch-hheeeecchhhhh
Confidence 9987521 1124467899999999999987765554 3456788999999999999999985443 4799999999999
Q ss_pred hhHHHHHHHHhhCCCce-Eec--CCCCCCC----ccccCCceEEEcCCCCCCCceEEEEEEec
Q 009708 472 ENEERVEAFLLRHPEFS-IDP--ADGLVPS----DFVTKHGFFFSDPIKHSLDGAFAARLVRA 527 (528)
Q Consensus 472 Ene~~v~~~l~~~~~~~-~~~--~~~~~~~----~~~~~~g~~~~~P~~~~~dGff~a~l~k~ 527 (528)
|||++|.+.|...|++. +.+ +.+.++. .+....++.+..|...+++|||+|.+.|+
T Consensus 351 ene~vv~d~l~~~p~~~~l~~kK~~p~w~~rg~~~~~~~e~~lr~~p~~~~~~gffva~fer~ 413 (413)
T KOG2360|consen 351 ENEQVVQEVLQQNPDAKRLAPKKVLPAWPHRGLSTFSGAEHCLRASPKSTLTIGFFVALFERV 413 (413)
T ss_pred hhhHHHHHHHhhChhHhhhchhhcchhhhhcCCccccccccceecccCCCCcceEEEEEeecC
Confidence 99999999999888643 333 2223332 22335677899999999999999988763
|
|
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-30 Score=259.77 Aligned_cols=182 Identities=33% Similarity=0.479 Sum_probs=154.7
Q ss_pred cccceeEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCC---CcEEEEEcCChHHHHHHHHHHHHcCCCcc
Q 009708 312 LKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSG---QGLVYAIDINKGRLRILNETAKLHQVNSV 388 (528)
Q Consensus 312 ~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~---~~~v~avD~s~~~l~~~~~n~~~~g~~~~ 388 (528)
..-|.++.||..|++++.+|+++||++||||||+||+||+++.+.+.. .|.|+|.|.++.|+..+...+++..-.+
T Consensus 132 ~~vg~i~rqeavSmlPvL~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~- 210 (375)
T KOG2198|consen 132 TGVGNIYRQEAVSMLPVLALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPN- 210 (375)
T ss_pred cccccchhhhhhhccchhhcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcc-
Confidence 447899999999999999999999999999999999999999887753 3589999999999999999998877665
Q ss_pred EEEEcCcccccccc--------CCCCCCEEEEcCCCCCCccccCCchhhcc-CCHHHHHHHHHHHHHHHHHHhccCcCCC
Q 009708 389 IRTIHADLRTFADN--------STVKCDKVLLDAPCSGLGVLSKRADLRWN-RRLEDMEELKILQDELLDAASLLVKPGG 459 (528)
Q Consensus 389 i~~~~~D~~~~~~~--------~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~-~~~~~~~~l~~~q~~lL~~a~~~LkpGG 459 (528)
+.+.+.|+..++.. ....||+||+|+||||.|++++++++.-. +....-..+..+|..||.++.++||+||
T Consensus 211 ~~v~~~~~~~~p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG 290 (375)
T KOG2198|consen 211 LLVTNHDASLFPNIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGG 290 (375)
T ss_pred eeeecccceeccccccccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCC
Confidence 66777777655432 23579999999999999999999998432 4444446788899999999999999999
Q ss_pred EEEEEcCCCCchhhHHHHHHHHhhCC-CceEecCCC
Q 009708 460 VLVYSTCSIDPEENEERVEAFLLRHP-EFSIDPADG 494 (528)
Q Consensus 460 ~LvysTcs~~~~Ene~~v~~~l~~~~-~~~~~~~~~ 494 (528)
+|||||||+.|.|||.||+..|++.. .+++.....
T Consensus 291 ~lVYSTCSLnpieNEaVV~~~L~~~~~~~~lv~~~~ 326 (375)
T KOG2198|consen 291 RLVYSTCSLNPIENEAVVQEALQKVGGAVELVDVSG 326 (375)
T ss_pred EEEEeccCCCchhhHHHHHHHHHHhcCcccceeecc
Confidence 99999999999999999999999874 455555443
|
|
| >COG0781 NusB Transcription termination factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.1e-27 Score=213.67 Aligned_cols=134 Identities=22% Similarity=0.299 Sum_probs=110.6
Q ss_pred CChHHHHHHHHHHHHHhCCC-chHHHhhcCCCCCCCccchhhhhcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009708 57 VSPHRAVSAVRLMRIQFGGA-FADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICL 135 (528)
Q Consensus 57 ~~~aR~~A~~~Ly~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lv~gv~~~~~~LD~~i~~ 135 (528)
|+.+|+.|+|+||+|+.++. .++.+.+.. ...+.....+....+..|+..|+.||.+|+..||.+|.+
T Consensus 10 R~~aR~~avq~Ly~~~~~~~~~~~~~~~~~-----------~~~~~~~d~~~~~~~~~~~~~lv~gv~~~~~~iD~~I~~ 78 (151)
T COG0781 10 RRQARELAVQALYQWELSGSVSAEDILEDI-----------EEEFVENELDIELADSEYFRSLVKGVLENQEELDELISP 78 (151)
T ss_pred HHHHHHHHHHHHHHHHhcCCcchhHHHHHH-----------HHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34789999999999999665 222232211 000000011222388999999999999999999999999
Q ss_pred hccCCCCCCcccHHHHHHHHHHHHHHHhcC-CCCchhHHHHHHHHHHhcCCCchhhHHHHHHHHHhhc
Q 009708 136 LCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLK 202 (528)
Q Consensus 136 ~l~~~~~~~~l~~~~~~iLrlg~~el~~~~-~p~~~~inEaV~lak~~~~~~~~~fVN~VL~~~~r~~ 202 (528)
++++ |+++||++++|+|||+|+|||+|.+ +|..++|||||+|||.|+++++++||||||+++++..
T Consensus 79 ~L~~-w~~~rL~~verAILRla~yEl~~~~dvP~~VvInEaielaK~f~~e~s~kFINgVLd~i~~~~ 145 (151)
T COG0781 79 HLKK-WSLERLDLVERAILRLALYELLFRDDVPYKVVINEAIELAKKFSGEDSHKFVNGVLDKIAKKL 145 (151)
T ss_pred HHcc-CCHHHhhHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 9998 9999999999999999999999976 9999999999999999999999999999999999864
|
|
| >PF01029 NusB: NusB family; InterPro: IPR006027 This domain is found in a number of functionally different proteins: NusB a prokaryotic transcription factor involved in antitermination TIM44, the mitochondrial inner membrane translocase subunit RsmB, the 16S rRNA m5C967 methyltransferase NusB is a prokaryotic transcription factor involved in antitermination processes, during which it interacts with the boxA portion of the mRNA nut site | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-27 Score=212.48 Aligned_cols=130 Identities=26% Similarity=0.460 Sum_probs=109.0
Q ss_pred hHHHHHHHHHHHHHhCCCchHHHhhcCCCCCCCccchhhhhcc--cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009708 59 PHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLG--FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLL 136 (528)
Q Consensus 59 ~aR~~A~~~Ly~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~lv~gv~~~~~~LD~~i~~~ 136 (528)
++|+.|+|+||+++.++.. +..... +....+. .....+++.|++|+++|++|+++++..||++|+++
T Consensus 2 ~aR~~A~q~L~~~~~~~~~-~~~~~~----------~~~~~l~~~~~~~~~~~~d~~~~~~lv~gv~~~~~~ld~~i~~~ 70 (134)
T PF01029_consen 2 KARELALQALYQVEFNDEE-DEEEGQ----------FLDEALEEELEESELSEEDRAFARELVYGVLRNKEELDALISKL 70 (134)
T ss_dssp HHHHHHHHHHHHHHHHTSS-HHHHHH----------HHHHHHHHHHHHTTSTHHHHHHHHHHHHHHHHTHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHccCCc-hhhhhh----------hHHHHHhhcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999766655 111111 1111111 12356899999999999999999999999999998
Q ss_pred ccCCCCCCcccHHHHHHHHHHHHHHHhc-CCCCchhHHHHHHHHHHhcCCCchhhHHHHHHHHHh
Q 009708 137 CHDEKTFSSMEPLLLQILRIGFYEIVKL-DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVL 200 (528)
Q Consensus 137 l~~~~~~~~l~~~~~~iLrlg~~el~~~-~~p~~~~inEaV~lak~~~~~~~~~fVN~VL~~~~r 200 (528)
+++ |+++++++++++|||+|+|||+|+ ++|++++|||||++||+|+++++++|||||||+++|
T Consensus 71 ~~~-~~~~rl~~~~~~iLrla~~El~~~~~~p~~v~InEaVelak~~~~~~~~~fVNaVL~~~~R 134 (134)
T PF01029_consen 71 LKN-WPLERLPPVDRAILRLAIYELLFLDDIPPHVAINEAVELAKKYGDEKSAGFVNAVLRRIAR 134 (134)
T ss_dssp STS-STGGGSGHHHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHH
T ss_pred hcc-CCccccCHHHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHhCCCCcchhHHHHHHHhhC
Confidence 855 999999999999999999999998 799999999999999999999999999999999986
|
Previous studies have shown that NusB exhibits an all-helical fold, and that the protein from Escherichia coli forms monomers, while Mycobacterium tuberculosis NusB is a dimer. The functional significance of NusB dimerization is unknown. An N-terminal arginine-rich sequence is the probable RNA binding site, exhibiting aromatic residues as potential stacking partners for the RNA bases. The RNA binding region is hidden in the subunit interface of dimeric NusB proteins, such as NusB from M. tuberculosis, suggesting that such dimers have to undergo a considerable conformational change or dissociate for engagement with RNA. In certain organisms, dimerization may be employed to package NusB in an inactive form until recruitment into antitermination complexes [, ]. The antitermination proteins of E. coli are recruited in the replication cycle of Bacteriophage lambda, where they play an important role in switching from the lysogenic to the lytic cycle.; GO: 0003723 RNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1SQG_A 1SQF_A 3IMQ_A 3D3C_C 3D3B_A 1EY1_A 1EYV_A 1TZV_A 1TZT_B 1TZX_B .... |
| >cd00619 Terminator_NusB Transcription termination factor NusB (N protein-Utilization Substance B) | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-26 Score=206.30 Aligned_cols=127 Identities=20% Similarity=0.215 Sum_probs=114.0
Q ss_pred ChHHHHHHHHHHHHHhCCCchHHHhhcCCCCCCCccchhhhhcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 009708 58 SPHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLC 137 (528)
Q Consensus 58 ~~aR~~A~~~Ly~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lv~gv~~~~~~LD~~i~~~l 137 (528)
+.+|+.|+|+||+++..+.+.+.+.+.. .....+++.|++|+++||+|++++...||++|++++
T Consensus 2 ~~~R~~a~~~L~~~~~~~~~~~~~l~~~----------------~~~~~~~~~d~~~~~~lv~gvlr~~~~ld~ii~~~l 65 (130)
T cd00619 2 RRARELAVQALYAWELAPEILAEVVSLL----------------ELLQYKSKKVLPFALKLVRGVLENIEEIDELIEKHL 65 (130)
T ss_pred hHHHHHHHHHHHHHHhcCCCHHHHHHHH----------------HHhcccchhHHHHHHHHHHHHHHhHHHHHHHHHHHc
Confidence 3679999999999999888877766542 112246788999999999999999999999999999
Q ss_pred cCCCCCCcccHHHHHHHHHHHHHHHhcC-CCCchhHHHHHHHHHHhcCCCchhhHHHHHHHHHhh
Q 009708 138 HDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLL 201 (528)
Q Consensus 138 ~~~~~~~~l~~~~~~iLrlg~~el~~~~-~p~~~~inEaV~lak~~~~~~~~~fVN~VL~~~~r~ 201 (528)
++ |++.++++++++|||+|+||++|++ +|++++|||+|+|||+|+++++++||||||+++.++
T Consensus 66 ~~-~~~~~l~~~~~~iLria~~el~~~~~~p~~~vinEaV~lak~~~~~~~~~fVNaVLr~i~r~ 129 (130)
T cd00619 66 RN-WSLDRLAIVERAILRLAVYELLFLPDVPHPVVINEAIELAKRFGGDDSHKFVNGVLDKIAKD 129 (130)
T ss_pred cC-CCHHHhhHHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHCCCcchhHHHHHHHHHhhc
Confidence 75 8899999999999999999999987 999999999999999999999999999999999874
|
NusB plays a key role in the regulation of ribosomal RNA biosynthesis in eubacteria by modulating the efficiency of transcriptional antitermination. NusB along with other Nus factors (NusA, NusE/S10 and NusG) forms the core complex with the boxA element of the nut site of the rRNA operons. These interactions help RNA polymerase to counteract polarity during transcription of rRNA operons and allow stable antitermination. The transcription antitermination system can be appropriated by some bacteriophages such as lambda, which use the system to switch between the lysogenic and lytic modes of phage propagation. |
| >PRK00202 nusB transcription antitermination protein NusB; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-26 Score=207.20 Aligned_cols=128 Identities=24% Similarity=0.343 Sum_probs=115.5
Q ss_pred ChHHHHHHHHHHHHHhCCCchHHHhhcCCCCCCCccchhhhhcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 009708 58 SPHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLC 137 (528)
Q Consensus 58 ~~aR~~A~~~Ly~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lv~gv~~~~~~LD~~i~~~l 137 (528)
+.+|+.|+|+||+++..+.+.+.+.+.. +....+++.|++|+++||+|+++|+..||++|++++
T Consensus 4 ~~~R~~a~~~L~~~~~~~~~~~~~l~~~----------------~~~~~~~~~d~~~~~~lv~gvlr~~~~lD~ii~~~l 67 (137)
T PRK00202 4 RKAREAAVQALYQWELSGNDIAEIIEAQ----------------LLEEQYDKADPAYFRSLVRGVVENQAELDELISPYL 67 (137)
T ss_pred HHHHHHHHHHHHHHHccCCCHHHHHHHH----------------HHhcccchhhHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 4789999999999999888887766542 122247789999999999999999999999999999
Q ss_pred cCCCCCCcccHHHHHHHHHHHHHHHhc-CCCCchhHHHHHHHHHHhcCCCchhhHHHHHHHHHhhc
Q 009708 138 HDEKTFSSMEPLLLQILRIGFYEIVKL-DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLK 202 (528)
Q Consensus 138 ~~~~~~~~l~~~~~~iLrlg~~el~~~-~~p~~~~inEaV~lak~~~~~~~~~fVN~VL~~~~r~~ 202 (528)
++ |+++++++++++|||+|+||++|+ ++|++++|||+|++||.|++++.++|||||||++.++.
T Consensus 68 ~~-~~~~~l~~~~~~iLr~a~~Ell~~~~~p~~~vinEaV~lak~~~~~~~~~fVNaVLr~i~r~~ 132 (137)
T PRK00202 68 KD-WTLERLDPVERAILRLALYELLFRDDVPYKVVINEAIELAKKFGDEDSHKFVNGVLDKIAKEL 132 (137)
T ss_pred cC-CCHHHhhHHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHCCCCcchhHHHHHHHHHHHh
Confidence 66 999999999999999999999998 69999999999999999999999999999999999864
|
|
| >TIGR01951 nusB transcription antitermination factor NusB | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.3e-26 Score=203.58 Aligned_cols=126 Identities=25% Similarity=0.386 Sum_probs=113.7
Q ss_pred ChHHHHHHHHHHHHHhCCCchHHHhhcCCCCCCCccchhhhhcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 009708 58 SPHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLC 137 (528)
Q Consensus 58 ~~aR~~A~~~Ly~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lv~gv~~~~~~LD~~i~~~l 137 (528)
+.+|+.|+++||+++..+.+.+.+.+.. .+..++++.|++|++++++|+++++..||++|++++
T Consensus 2 ~~~R~~a~~~l~~~~~~~~~~~~~l~~~----------------~~~~~l~~~d~~~~~~lv~~~lr~~~~ld~~i~~~~ 65 (129)
T TIGR01951 2 RKARELALQALYQWELSGNDVEEIIEEF----------------LEERELDEEDREYFLELVRGVLENQEEIDELISPHL 65 (129)
T ss_pred hHHHHHHHHHHHHHHcCCCCHHHHHHHH----------------HHhcccchhHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 4679999999999998888887776542 122357889999999999999999999999999999
Q ss_pred cCCCCCCcccHHHHHHHHHHHHHHHhc-CCCCchhHHHHHHHHHHhcCCCchhhHHHHHHHHHh
Q 009708 138 HDEKTFSSMEPLLLQILRIGFYEIVKL-DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVL 200 (528)
Q Consensus 138 ~~~~~~~~l~~~~~~iLrlg~~el~~~-~~p~~~~inEaV~lak~~~~~~~~~fVN~VL~~~~r 200 (528)
++ |+++++++++++|||+|+||++|+ ++|++++|||+|++||.++++++++|||||||++++
T Consensus 66 ~~-~~~~~l~~~~~~iLr~a~~el~~~~~~p~~avineaV~lak~~~~~~~~~fVNaVLr~i~r 128 (129)
T TIGR01951 66 KD-WSLERLDPVDRAILRLAAYELLYRPDVPYKVVINEAVELAKKFGDEDSHKFVNGVLDKIAK 128 (129)
T ss_pred cC-CCHHHhhHHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHCCCCchhhHHHHHHHHhh
Confidence 63 999999999999999999999999 699999999999999999999999999999999986
|
A transcription antitermination complex active in many bacteria was designated N-utilization substance (Nus) in E. coli because of its interaction with phage lambda protein N. This model represents NusB. Other components are NusA and NusG. NusE is, in fact, ribosomal protein S10. |
| >cd00620 Methyltransferase_Sun N-terminal RNA binding domain of the methyltransferase Sun | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-25 Score=199.88 Aligned_cols=123 Identities=34% Similarity=0.502 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHHhCCCchHHHhhcCCCCCCCccchhhhhcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 009708 60 HRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHD 139 (528)
Q Consensus 60 aR~~A~~~Ly~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lv~gv~~~~~~LD~~i~~~l~~ 139 (528)
+|+.|+|+||+++..+.+.+.+.... ..... ++.|++|+++|++|+++|+.+||++|+++++
T Consensus 3 ~R~~A~~~L~~v~~~~~~~~~~l~~~----------------~~~~~-~~~d~~~~~~lv~g~~r~~~~ld~~i~~~l~- 64 (126)
T cd00620 3 ARSTAAEVLRDVLQRGASLNAVLSAL----------------QKKDK-SDRDRGLATELVYGTLRWLALLDWIINPLLK- 64 (126)
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHH----------------HHhcC-CHHHHHHHHHHHHHHHHhHHHHHHHHHHHhC-
Confidence 69999999999988888877766542 11112 6789999999999999999999999999997
Q ss_pred CCCCCcccHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCCchhhHHHHHHHHHhh
Q 009708 140 EKTFSSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLL 201 (528)
Q Consensus 140 ~~~~~~l~~~~~~iLrlg~~el~~~~~p~~~~inEaV~lak~~~~~~~~~fVN~VL~~~~r~ 201 (528)
|++.++++++++|||+|+|||+|+++|++++|||+|++||+++++++++|||||||++.|+
T Consensus 65 -~~~~~~~~~~~~iLr~a~~el~~~~~p~~avvneaVelak~~~~~~~~~fVNaVLr~i~r~ 125 (126)
T cd00620 65 -KPDVGKDPDVRNLLRLGLYQLLYLDVPPHAAVDETVEIAKIRKDLGRAGLVNAVLRRFERE 125 (126)
T ss_pred -CCccccCHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhCCCchhhHHHHHHHHHhcc
Confidence 5567899999999999999999999999999999999999999999999999999999873
|
The rRNA-specific 5-methylcytidine transferase Sun, also known as RrmB or Fmu shares the RNA-binding non-catalytic domain with the transcription termination factor NusB. The precise biological role of this domain in Sun is unknown, although it is likely to be involved in sequence-specific RNA binding. The C-terminal methyltransferase domain of Sun has been shown to catalyze formation of m5C at position 967 of 16S rRNA in Escherichia coli. |
| >cd00447 NusB_Sun RNA binding domain of NusB (N protein-Utilization Substance B) and Sun (also known as RrmB or Fmu) proteins | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.8e-23 Score=181.87 Aligned_cols=124 Identities=24% Similarity=0.337 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHHhC-CCchHHHhhcCCCCCCCccchhhhhcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 009708 60 HRAVSAVRLMRIQFG-GAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCH 138 (528)
Q Consensus 60 aR~~A~~~Ly~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lv~gv~~~~~~LD~~i~~~l~ 138 (528)
+|+.|+++||+++.. +...+.+.... . ...+++.|++|+++|++||++++..||++|+++++
T Consensus 2 ~R~~a~~~L~~~~~~~~~~~~~~~~~~----------------~-~~~~~~~d~~~~~~lv~gv~r~~~~ld~~i~~~~~ 64 (129)
T cd00447 2 AREIAFQALYQVEIRNGISLEAVLSAL----------------E-KLQLAKKDRPFALELVYGVLRNLPELDDIISPLLK 64 (129)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHH----------------H-HcccchhHHHHHHHHHHHHHHhHHHHHHHHHHHcc
Confidence 599999999999887 77776666442 1 12466789999999999999999999999999997
Q ss_pred CCCCCCcccHHHHHHHHHHHHHHHhcC--CCCchhHHHHHHHHHHhcCCCchhhHHHHHHHHHhh
Q 009708 139 DEKTFSSMEPLLLQILRIGFYEIVKLD--MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLL 201 (528)
Q Consensus 139 ~~~~~~~l~~~~~~iLrlg~~el~~~~--~p~~~~inEaV~lak~~~~~~~~~fVN~VL~~~~r~ 201 (528)
+ |+++|++.+++.||+++.+|+.++. +|++++|||+|++||++++++.++|||||||++.++
T Consensus 65 ~-~~~~r~~~~~~~il~l~~~el~~~~~~~p~~~vineaVelak~~~~~~~~~fVNaVLr~~~r~ 128 (129)
T cd00447 65 K-WLLDRLDKVDRAILRLLLYELYQLLYDVPPPVAINEAVELAKRFGDDDSAKFVNGVLRRIAKE 128 (129)
T ss_pred C-CChhhhhHHHHHHHHHHHHHHHhCcCCCCchhHHHHHHHHHHHHCCCCcchhHHHHHHHHhhc
Confidence 6 9999999999999999999988864 899999999999999999999999999999999874
|
This family includes two orthologous groups exemplified by the transcription termination factor NusB and the N-terminal domain of the rRNA-specific 5-methylcytidine transferase (m5C-methyltransferase) Sun. The NusB protein plays a key role in the regulation of ribosomal RNA biosynthesis in eubacteria by modulating the efficiency of transcriptional antitermination. NusB along with other Nus factors (NusA, NusE/S10 and NusG) forms the core complex with the boxA element of the nut site of the rRNA operons. These interactions help RNA polymerase to counteract polarity during transcription of rRNA operons and allow stable antitermination. The transcription antitermination system can be appropriated by some bacteriophages such as lambda, which use the system to switch between the lysogenic and lytic modes of phage propagation. The m5C-methyltransferase Sun shares the |
| >PRK09634 nusB transcription antitermination protein NusB; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.8e-21 Score=179.60 Aligned_cols=93 Identities=25% Similarity=0.347 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCCch
Q 009708 109 DRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVRLAKVALRPGAG 188 (528)
Q Consensus 109 ~~d~~~~~~lv~gv~~~~~~LD~~i~~~l~~~~~~~~l~~~~~~iLrlg~~el~~~~~p~~~~inEaV~lak~~~~~~~~ 188 (528)
+.+++|+++||+||++++..||++|.+++++ |++.++++++++|||+|+|||+|+++|++++|||||++||+|++++++
T Consensus 110 ~~~r~~a~~Lv~gvlr~~~~LD~iI~~~l~~-W~l~rL~~idr~ILRlavyELl~l~~P~~vaINEAVeLAK~~~~~~~~ 188 (207)
T PRK09634 110 EEVREYALERIGAVIRNRKEIDQLLDTVMVG-WQLKRLPRIDRDILRLAVVEILFLNTPAAVAINEAVELAKRYSDEQGR 188 (207)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhcc-ccccCCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhCCCccc
Confidence 8999999999999999999999999999976 999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhhc
Q 009708 189 NLVNGILRKLVLLK 202 (528)
Q Consensus 189 ~fVN~VL~~~~r~~ 202 (528)
+|||||||++.+..
T Consensus 189 ~FVNaVLrri~r~~ 202 (207)
T PRK09634 189 RFINGVLRRLQDAL 202 (207)
T ss_pred chHHHHHHHHHHHh
Confidence 99999999999864
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.7e-17 Score=167.75 Aligned_cols=163 Identities=23% Similarity=0.271 Sum_probs=131.2
Q ss_pred cccccceeEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCC-cc
Q 009708 310 GLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN-SV 388 (528)
Q Consensus 310 ~~~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~-~~ 388 (528)
...+.|.|..|..+...+...+. |++|||+||.||++++++|. ++..+||+||+|...++.+++|++.+|++ ..
T Consensus 195 ~g~kTGfFlDqR~~R~~l~~~~~---GkrvLNlFsYTGgfSv~Aa~--gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~ 269 (393)
T COG1092 195 DGLKTGFFLDQRDNRRALGELAA---GKRVLNLFSYTGGFSVHAAL--GGASEVTSVDLSKRALEWARENAELNGLDGDR 269 (393)
T ss_pred CcccceeeHHhHHHHHHHhhhcc---CCeEEEecccCcHHHHHHHh--cCCCceEEEeccHHHHHHHHHHHHhcCCCccc
Confidence 45789999999999988888765 89999999999999999986 45669999999999999999999999986 45
Q ss_pred EEEEcCccccccccC---CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 389 IRTIHADLRTFADNS---TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 389 i~~~~~D~~~~~~~~---~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
+.++++|++++.... +.+||+|++|||.. .+++ .......+.+..++..+.++|+|||+++.||
T Consensus 270 ~~~i~~Dvf~~l~~~~~~g~~fDlIilDPPsF-----~r~k--------~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s 336 (393)
T COG1092 270 HRFIVGDVFKWLRKAERRGEKFDLIILDPPSF-----ARSK--------KQEFSAQRDYKDLNDLALRLLAPGGTLVTSS 336 (393)
T ss_pred eeeehhhHHHHHHHHHhcCCcccEEEECCccc-----ccCc--------ccchhHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 789999999987654 45899999999994 3433 3445667778899999999999999999999
Q ss_pred CCCCchhh--HHHHH-HHHhhCCCceEe
Q 009708 466 CSIDPEEN--EERVE-AFLLRHPEFSID 490 (528)
Q Consensus 466 cs~~~~En--e~~v~-~~l~~~~~~~~~ 490 (528)
|+.+-... .+.+. .+.......+..
T Consensus 337 ~~~~~~~~~f~~~i~~a~~~~~~~~~~~ 364 (393)
T COG1092 337 CSRHFSSDLFLEIIARAAAAAGRRAQEI 364 (393)
T ss_pred cCCccCHHHHHHHHHHHHHhcCCcEEEe
Confidence 99665443 23333 333444445444
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.5e-16 Score=167.27 Aligned_cols=165 Identities=18% Similarity=0.204 Sum_probs=125.1
Q ss_pred ccccccceeEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCC-c
Q 009708 309 AGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN-S 387 (528)
Q Consensus 309 ~~~~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~-~ 387 (528)
...++.|+|..|.....++..+. +|.+|||+|||+|+++++++. .+..+|+++|+|+.+++.+++|++.+|++ .
T Consensus 197 ~~g~ktG~flDqr~~R~~~~~~~---~g~rVLDlfsgtG~~~l~aa~--~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~ 271 (396)
T PRK15128 197 QGGHKTGYYLDQRDSRLATRRYV---ENKRVLNCFSYTGGFAVSALM--GGCSQVVSVDTSQEALDIARQNVELNKLDLS 271 (396)
T ss_pred ccccccCcChhhHHHHHHHHHhc---CCCeEEEeccCCCHHHHHHHh--CCCCEEEEEECCHHHHHHHHHHHHHcCCCCC
Confidence 35678999999987777766553 478999999999999987664 44569999999999999999999999986 3
Q ss_pred cEEEEcCcccccccc---CCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 388 VIRTIHADLRTFADN---STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 388 ~i~~~~~D~~~~~~~---~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
+++++++|+.++... ..++||+|++|||+... +...+......+.+++..+.++|+|||.|+++
T Consensus 272 ~v~~i~~D~~~~l~~~~~~~~~fDlVilDPP~f~~-------------~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~ 338 (396)
T PRK15128 272 KAEFVRDDVFKLLRTYRDRGEKFDVIVMDPPKFVE-------------NKSQLMGACRGYKDINMLAIQLLNPGGILLTF 338 (396)
T ss_pred cEEEEEccHHHHHHHHHhcCCCCCEEEECCCCCCC-------------ChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 589999999887532 13579999999999431 11344455556788899999999999999999
Q ss_pred cCCCCc--hhhHHHHHHHHh-hCCCceEec
Q 009708 465 TCSIDP--EENEERVEAFLL-RHPEFSIDP 491 (528)
Q Consensus 465 Tcs~~~--~Ene~~v~~~l~-~~~~~~~~~ 491 (528)
+||.+- ++-.+.+.+... ....+++..
T Consensus 339 scs~~~~~~~f~~~v~~aa~~~~~~~~~l~ 368 (396)
T PRK15128 339 SCSGLMTSDLFQKIIADAAIDAGRDVQFIE 368 (396)
T ss_pred eCCCcCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 999554 333445544433 233455443
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.2e-16 Score=156.90 Aligned_cols=143 Identities=27% Similarity=0.369 Sum_probs=108.2
Q ss_pred cccccceeEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCC-cc
Q 009708 310 GLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN-SV 388 (528)
Q Consensus 310 ~~~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~-~~ 388 (528)
...+.|+|..|.+...++..... |.+|||++|.+|+++++++. ++..+|++||.|...++.+++|++.+|++ ..
T Consensus 101 ~gqktGlFlDqR~nR~~v~~~~~---gkrvLnlFsYTGgfsv~Aa~--gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~ 175 (286)
T PF10672_consen 101 DGQKTGLFLDQRENRKWVRKYAK---GKRVLNLFSYTGGFSVAAAA--GGAKEVVSVDSSKRALEWAKENAALNGLDLDR 175 (286)
T ss_dssp SSSSTSS-GGGHHHHHHHHHHCT---TCEEEEET-TTTHHHHHHHH--TTESEEEEEES-HHHHHHHHHHHHHTT-CCTC
T ss_pred CCCcceEcHHHHhhHHHHHHHcC---CCceEEecCCCCHHHHHHHH--CCCCEEEEEeCCHHHHHHHHHHHHHcCCCccc
Confidence 45789999999999988887753 78999999999999998875 45568999999999999999999999986 56
Q ss_pred EEEEcCcccccccc--CCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcC
Q 009708 389 IRTIHADLRTFADN--STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466 (528)
Q Consensus 389 i~~~~~D~~~~~~~--~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTc 466 (528)
++++++|+.++... ..++||+|++|||..+-|. + . +.+.+.+++..+.++|+|||.|+.+||
T Consensus 176 ~~~~~~Dvf~~l~~~~~~~~fD~IIlDPPsF~k~~--------~-----~---~~~~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 176 HRFIQGDVFKFLKRLKKGGRFDLIILDPPSFAKSK--------F-----D---LERDYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp EEEEES-HHHHHHHHHHTT-EEEEEE--SSEESST--------C-----E---HHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred eEEEecCHHHHHHHHhcCCCCCEEEECCCCCCCCH--------H-----H---HHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 89999999886542 2468999999999853221 1 1 234577889999999999999999999
Q ss_pred CCCchhh
Q 009708 467 SIDPEEN 473 (528)
Q Consensus 467 s~~~~En 473 (528)
|.+-...
T Consensus 240 s~~i~~~ 246 (286)
T PF10672_consen 240 SHHISPD 246 (286)
T ss_dssp -TTS-HH
T ss_pred CcccCHH
Confidence 9776543
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.3e-15 Score=146.64 Aligned_cols=153 Identities=20% Similarity=0.285 Sum_probs=118.0
Q ss_pred hHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc
Q 009708 323 SAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 402 (528)
Q Consensus 323 ~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~ 402 (528)
.+.+++.+..+....+|||+|||+|..++.+|++.. ..+|++||+++.+.+.|++|++.+++..+|+++++|+.++.+.
T Consensus 32 DaiLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~-~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~ 110 (248)
T COG4123 32 DAILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTE-KAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKA 110 (248)
T ss_pred HHHHHHhhcccccCCeEEEecCCcCHHHHHHhccCC-CCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhc
Confidence 367888888887788999999999999999999855 3899999999999999999999999999999999999998765
Q ss_pred C-CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHHH
Q 009708 403 S-TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFL 481 (528)
Q Consensus 403 ~-~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~l 481 (528)
. ..+||+|+||||+.-.|.- ++++-... ....+....-.++++.|.++|||||++.+ +++.|.-.-+...+
T Consensus 111 ~~~~~fD~Ii~NPPyf~~~~~-~~~~~~~~---~Ar~e~~~~le~~i~~a~~~lk~~G~l~~----V~r~erl~ei~~~l 182 (248)
T COG4123 111 LVFASFDLIICNPPYFKQGSR-LNENPLRA---IARHEITLDLEDLIRAAAKLLKPGGRLAF----VHRPERLAEIIELL 182 (248)
T ss_pred ccccccCEEEeCCCCCCCccc-cCcChhhh---hhhhhhcCCHHHHHHHHHHHccCCCEEEE----EecHHHHHHHHHHH
Confidence 4 3469999999999877764 22211100 01111122235679999999999999975 46666654555666
Q ss_pred hhC
Q 009708 482 LRH 484 (528)
Q Consensus 482 ~~~ 484 (528)
.++
T Consensus 183 ~~~ 185 (248)
T COG4123 183 KSY 185 (248)
T ss_pred Hhc
Confidence 653
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.3e-14 Score=146.55 Aligned_cols=129 Identities=22% Similarity=0.273 Sum_probs=98.9
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEE
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 412 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~ 412 (528)
..++.+|||+|||+|..++.++... +..+|+|+|+|+.+++.+++|++.+|+.++++++++|+..... ..+||+|++
T Consensus 119 ~~~~~~vLDlG~GsG~i~~~la~~~-~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~--~~~fD~Iv~ 195 (284)
T TIGR03533 119 PEPVKRILDLCTGSGCIAIACAYAF-PEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALP--GRKYDLIVS 195 (284)
T ss_pred cCCCCEEEEEeCchhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccC--CCCccEEEE
Confidence 3445799999999999999999874 3579999999999999999999999997779999999865432 247999999
Q ss_pred cCCCCCCccccCCc-hhhccCCHHHH----HHHHHHHHHHHHHHhccCcCCCEEEEEcC
Q 009708 413 DAPCSGLGVLSKRA-DLRWNRRLEDM----EELKILQDELLDAASLLVKPGGVLVYSTC 466 (528)
Q Consensus 413 D~Pcsg~G~~~~~p-d~~~~~~~~~~----~~l~~~q~~lL~~a~~~LkpGG~LvysTc 466 (528)
|||+...+.+...+ +.+ ..+... ......++.++..+.++|+|||++++-+.
T Consensus 196 NPPy~~~~~~~~l~~~~~--~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 196 NPPYVDAEDMADLPAEYH--HEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred CCCCCCccchhhCCHhhh--cCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 99997665543222 221 111110 12346678899999999999999986543
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=9.4e-15 Score=135.49 Aligned_cols=139 Identities=24% Similarity=0.318 Sum_probs=112.7
Q ss_pred cchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccc
Q 009708 321 DESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400 (528)
Q Consensus 321 d~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~ 400 (528)
.+-..+....|.+++|++++|+|||+|+.++.++ ++.+.++|+|+|.++++++..++|++++|++| ++++.+|+.+..
T Consensus 20 ~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a-~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n-~~vv~g~Ap~~L 97 (187)
T COG2242 20 EEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWA-LAGPSGRVIAIERDEEALELIERNAARFGVDN-LEVVEGDAPEAL 97 (187)
T ss_pred HHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHH-HhCCCceEEEEecCHHHHHHHHHHHHHhCCCc-EEEEeccchHhh
Confidence 4455667778899999999999999999999999 56889999999999999999999999999887 999999998877
Q ss_pred ccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHH
Q 009708 401 DNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAF 480 (528)
Q Consensus 401 ~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~ 480 (528)
...+ +||.||+ .|.|. ...+|+.++..|||||+||...- ..|++......
T Consensus 98 ~~~~-~~daiFI----GGg~~----------------------i~~ile~~~~~l~~ggrlV~nai---tlE~~~~a~~~ 147 (187)
T COG2242 98 PDLP-SPDAIFI----GGGGN----------------------IEEILEAAWERLKPGGRLVANAI---TLETLAKALEA 147 (187)
T ss_pred cCCC-CCCEEEE----CCCCC----------------------HHHHHHHHHHHcCcCCeEEEEee---cHHHHHHHHHH
Confidence 6543 7999998 33332 23469999999999999995443 34666667777
Q ss_pred HhhCCCceEec
Q 009708 481 LLRHPEFSIDP 491 (528)
Q Consensus 481 l~~~~~~~~~~ 491 (528)
++++..+++..
T Consensus 148 ~~~~g~~ei~~ 158 (187)
T COG2242 148 LEQLGGREIVQ 158 (187)
T ss_pred HHHcCCceEEE
Confidence 77765434443
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.4e-15 Score=130.02 Aligned_cols=112 Identities=25% Similarity=0.328 Sum_probs=88.6
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDA 414 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~ 414 (528)
||.+|||+|||+|..+..+++.. +..+|+|+|+|+.+++.+++++...+...+++++++|+ ........+||+|+++.
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~D~v~~~~ 78 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLF-PGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDFLEPFDLVICSG 78 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTTSSCEEEEEECS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCcccCCCCCEEEECC
Confidence 57899999999999999999853 46899999999999999999998888877899999999 33333346799999865
Q ss_pred CCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcC
Q 009708 415 PCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466 (528)
Q Consensus 415 Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTc 466 (528)
.+.... ... ..+.++++.+.+.|+|||+|++.+|
T Consensus 79 -~~~~~~----------------~~~-~~~~~~l~~~~~~L~pgG~lvi~~~ 112 (112)
T PF12847_consen 79 -FTLHFL----------------LPL-DERRRVLERIRRLLKPGGRLVINTC 112 (112)
T ss_dssp -GSGGGC----------------CHH-HHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred -Cccccc----------------cch-hHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 211001 011 3456679999999999999999988
|
... |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.1e-15 Score=167.65 Aligned_cols=147 Identities=20% Similarity=0.280 Sum_probs=118.5
Q ss_pred cccccceeEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCC-cc
Q 009708 310 GLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN-SV 388 (528)
Q Consensus 310 ~~~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~-~~ 388 (528)
...+.|.|..|.....++..+. .|.+|||+|||+|+++++++.. +..+|+++|+|+.+++.+++|++.+|++ ++
T Consensus 516 ~~~~tG~flDqr~~R~~~~~~~---~g~rVLDlf~gtG~~sl~aa~~--Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~ 590 (702)
T PRK11783 516 DYLDTGLFLDHRPTRRMIGQMA---KGKDFLNLFAYTGTASVHAALG--GAKSTTTVDMSNTYLEWAERNFALNGLSGRQ 590 (702)
T ss_pred CCCcceECHHHHHHHHHHHHhc---CCCeEEEcCCCCCHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHhCCCccc
Confidence 4467899999988877777664 3789999999999999999974 4458999999999999999999999997 56
Q ss_pred EEEEcCccccccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCC
Q 009708 389 IRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 468 (528)
Q Consensus 389 i~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~ 468 (528)
++++++|+.++.....++||+|++|||+.+.+- ...++......+.+++..+.++|+|||+|++++|+-
T Consensus 591 v~~i~~D~~~~l~~~~~~fDlIilDPP~f~~~~-----------~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~ 659 (702)
T PRK11783 591 HRLIQADCLAWLKEAREQFDLIFIDPPTFSNSK-----------RMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKR 659 (702)
T ss_pred eEEEEccHHHHHHHcCCCcCEEEECCCCCCCCC-----------ccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 999999998865433468999999999965321 111233445567888999999999999999999986
Q ss_pred Cchh
Q 009708 469 DPEE 472 (528)
Q Consensus 469 ~~~E 472 (528)
+-..
T Consensus 660 ~~~~ 663 (702)
T PRK11783 660 GFKM 663 (702)
T ss_pred cCCh
Confidence 6554
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.2e-15 Score=140.98 Aligned_cols=126 Identities=22% Similarity=0.322 Sum_probs=100.3
Q ss_pred cchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccc
Q 009708 321 DESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400 (528)
Q Consensus 321 d~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~ 400 (528)
|.++.++++.+...++.+|||+|||+|..++.+++. .+..+|+++|+++.+++.+++|++.+++++ +++++.|..+..
T Consensus 17 d~~t~lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~-~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~~ 94 (170)
T PF05175_consen 17 DAGTRLLLDNLPKHKGGRVLDLGCGSGVISLALAKR-GPDAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFEAL 94 (170)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEETSTTSHHHHHHHHT-STCEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTTTC
T ss_pred CHHHHHHHHHHhhccCCeEEEecCChHHHHHHHHHh-CCCCEEEEEcCCHHHHHHHHHHHHhcCccc-cccccccccccc
Confidence 667888888777667889999999999999999987 445689999999999999999999999998 999999997755
Q ss_pred ccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 401 DNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 401 ~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
. ..+||.|++|||....+ ........++++.+.++|||||.|++..-+
T Consensus 95 ~--~~~fD~Iv~NPP~~~~~-----------------~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~ 142 (170)
T PF05175_consen 95 P--DGKFDLIVSNPPFHAGG-----------------DDGLDLLRDFIEQARRYLKPGGRLFLVINS 142 (170)
T ss_dssp C--TTCEEEEEE---SBTTS-----------------HCHHHHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred c--ccceeEEEEccchhccc-----------------ccchhhHHHHHHHHHHhccCCCEEEEEeec
Confidence 4 47899999999963211 112334577899999999999998754433
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.6e-15 Score=129.96 Aligned_cols=115 Identities=23% Similarity=0.312 Sum_probs=91.8
Q ss_pred CCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccc-cCCCCCCEEEEcC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NSTVKCDKVLLDA 414 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~-~~~~~fD~Vl~D~ 414 (528)
|.+|||+|||+|..++.+++.. ..+++++|+++..++.++.|+..+++..+++++++|+..... ....+||+|++||
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~np 78 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNP 78 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--
T ss_pred CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECC
Confidence 5689999999999999999873 579999999999999999999999997779999999988763 2357899999999
Q ss_pred CCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcC
Q 009708 415 PCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466 (528)
Q Consensus 415 Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTc 466 (528)
|+........ .....+..+++.+.++|||||.+++.+|
T Consensus 79 P~~~~~~~~~--------------~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 79 PYGPRSGDKA--------------ALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp STTSBTT------------------GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCccccccch--------------hhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 9964321110 1111556789999999999999999876
|
... |
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.3e-14 Score=141.40 Aligned_cols=230 Identities=17% Similarity=0.141 Sum_probs=140.9
Q ss_pred HHHHHHHHHHhCHHHHHHHHHhcCCCCCeEEEEcCCCCCCHHHH---HHHHhh--cCCCCCc--eecccCCceEEeeCCc
Q 009708 231 VWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADL---VMQLNL--LKLQVPH--ELSLHLDEFIRVKTGL 303 (528)
Q Consensus 231 ~w~~~~~~~~~g~~~~~~~~~~~~~~~~~~~rvn~~k~~~~~~~---~~~L~~--~~~~~~~--~~~~~~~~~~~~~~~~ 303 (528)
.|..+.|.+ +..+++.++......++..++.|..+..+.++. .+.+.. .|.+..+ +..++....+.+
T Consensus 9 ~~~~~~l~~--~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~g~~~f~~~~~~~---- 82 (275)
T PRK09328 9 REATARLAS--PRLDAELLLAHVLGLSRTDLLLNPEEELTPEELERFRALVARRAAGEPLQYILGEAEFWGLDFKV---- 82 (275)
T ss_pred HHHHHHHhC--cHHHHHHHHHHHHCcCHHHHhhcccCCCCHHHHHHHHHHHHHHHcCCCHHHHceeceEcCcEEEE----
Confidence 566666665 777888888888777788888887654455433 222222 1111110 001111111111
Q ss_pred cchhcccccccceeEeecchHHHHHH---hcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHH
Q 009708 304 QNVIQAGLLKEGLCAVQDESAGLVVA---VVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETA 380 (528)
Q Consensus 304 ~~~~~~~~~~~G~~~~Qd~~s~l~~~---~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~ 380 (528)
..+.+.....+..++.. .+...++.+|||+|||+|..++.++... +..+++++|+++.+++.+++|+
T Consensus 83 ---------~~~~lipr~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~-~~~~v~~iDis~~~l~~a~~n~ 152 (275)
T PRK09328 83 ---------SPGVLIPRPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKER-PDAEVTAVDISPEALAVARRNA 152 (275)
T ss_pred ---------CCCceeCCCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHH
Confidence 12222222222222222 2334567899999999999999999875 3579999999999999999999
Q ss_pred HHcCCCccEEEEcCccccccccCCCCCCEEEEcCCCCCCcccc-CCchhhccCCHHHH---HHHHHHHHHHHHHHhccCc
Q 009708 381 KLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLS-KRADLRWNRRLEDM---EELKILQDELLDAASLLVK 456 (528)
Q Consensus 381 ~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~-~~pd~~~~~~~~~~---~~l~~~q~~lL~~a~~~Lk 456 (528)
+ .+...++.++++|+..... .++||+|++||||...+.+. ..+++++......+ ......+..+++.+.++|+
T Consensus 153 ~-~~~~~~i~~~~~d~~~~~~--~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk 229 (275)
T PRK09328 153 K-HGLGARVEFLQGDWFEPLP--GGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLK 229 (275)
T ss_pred H-hCCCCcEEEEEccccCcCC--CCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcc
Confidence 8 3333458999999865332 36899999999997766543 22333321111111 1244667889999999999
Q ss_pred CCCEEEEEcCCCCchhhHHHHHHHHhh
Q 009708 457 PGGVLVYSTCSIDPEENEERVEAFLLR 483 (528)
Q Consensus 457 pGG~LvysTcs~~~~Ene~~v~~~l~~ 483 (528)
|||++++... . .. .+.+..++.+
T Consensus 230 ~gG~l~~e~g-~--~~-~~~~~~~l~~ 252 (275)
T PRK09328 230 PGGWLLLEIG-Y--DQ-GEAVRALLAA 252 (275)
T ss_pred cCCEEEEEEC-c--hH-HHHHHHHHHh
Confidence 9999997532 2 22 2235556654
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.4e-14 Score=138.66 Aligned_cols=140 Identities=16% Similarity=0.141 Sum_probs=104.3
Q ss_pred CCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc-CCCCCCEEEEcC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCDKVLLDA 414 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~-~~~~fD~Vl~D~ 414 (528)
+.+|||+|||+|.+++.++...+ ..+|+++|+|+.+++.+++|++.++. +++++|+.+.... ..++||+|++||
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~-~~~v~~vDis~~al~~A~~N~~~~~~----~~~~~D~~~~l~~~~~~~fDlVv~NP 161 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALD-GIELHAADIDPAAVRCARRNLADAGG----TVHEGDLYDALPTALRGRVDILAANA 161 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCC----EEEEeechhhcchhcCCCEeEEEECC
Confidence 45899999999999999998743 46899999999999999999998763 5788898764321 135799999999
Q ss_pred CCCCCccccC-CchhhccCCHHHH---HHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHHHhhC
Q 009708 415 PCSGLGVLSK-RADLRWNRRLEDM---EELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRH 484 (528)
Q Consensus 415 Pcsg~G~~~~-~pd~~~~~~~~~~---~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~l~~~ 484 (528)
||...+.+.+ .|+.++......+ ......+++++..+.++|||||.+++.+.. ...+ .+...+.++
T Consensus 162 Py~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~---~~~~-~v~~~l~~~ 231 (251)
T TIGR03704 162 PYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSE---RQAP-LAVEAFARA 231 (251)
T ss_pred CCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc---chHH-HHHHHHHHC
Confidence 9988776554 4555443222222 245677899999999999999999987653 2223 345556553
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.9e-14 Score=145.62 Aligned_cols=128 Identities=16% Similarity=0.151 Sum_probs=103.1
Q ss_pred HHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC
Q 009708 324 AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS 403 (528)
Q Consensus 324 s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~ 403 (528)
+..++.++.+++|+.|||+|||+|++++.++.. +.+|+|+|+++.++..++.|++.+|+.+ +.++++|+.+++..
T Consensus 171 a~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~---~~~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~l~~~- 245 (329)
T TIGR01177 171 ARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLM---GAKVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATKLPLS- 245 (329)
T ss_pred HHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHh---CCeEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhcCCcc-
Confidence 445556667889999999999999999887653 5789999999999999999999999987 88999999986542
Q ss_pred CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCC
Q 009708 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSID 469 (528)
Q Consensus 404 ~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~ 469 (528)
.++||.|++||||....... ......++.++|..+.+.|||||++++.+++-.
T Consensus 246 ~~~~D~Iv~dPPyg~~~~~~-------------~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~ 298 (329)
T TIGR01177 246 SESVDAIATDPPYGRSTTAA-------------GDGLESLYERSLEEFHEVLKSEGWIVYAVPTRI 298 (329)
T ss_pred cCCCCEEEECCCCcCccccc-------------CCchHHHHHHHHHHHHHHccCCcEEEEEEcCCC
Confidence 46899999999995322111 012345678899999999999999999887643
|
This family is found exclusively in the Archaea. |
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.2e-13 Score=132.35 Aligned_cols=134 Identities=19% Similarity=0.262 Sum_probs=104.0
Q ss_pred hHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc
Q 009708 323 SAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 402 (528)
Q Consensus 323 ~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~ 402 (528)
...+....+.+.++++|||+|||+|..++.++..+++.++|+++|+++.+++.+++|++.+|+.++++++++|+.+....
T Consensus 28 ~r~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~ 107 (198)
T PRK00377 28 IRALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFT 107 (198)
T ss_pred HHHHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhh
Confidence 34444556788899999999999999999999877667899999999999999999999999655589999999775443
Q ss_pred CCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHHHh
Q 009708 403 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLL 482 (528)
Q Consensus 403 ~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~l~ 482 (528)
....||.|+++... .. ...+++.+.++|||||++++.+|++ ++...+...++
T Consensus 108 ~~~~~D~V~~~~~~------------------~~-------~~~~l~~~~~~LkpgG~lv~~~~~~---~~~~~~~~~l~ 159 (198)
T PRK00377 108 INEKFDRIFIGGGS------------------EK-------LKEIISASWEIIKKGGRIVIDAILL---ETVNNALSALE 159 (198)
T ss_pred cCCCCCEEEECCCc------------------cc-------HHHHHHHHHHHcCCCcEEEEEeecH---HHHHHHHHHHH
Confidence 34679999985321 11 1346889999999999999888754 33445556665
Q ss_pred hC
Q 009708 483 RH 484 (528)
Q Consensus 483 ~~ 484 (528)
++
T Consensus 160 ~~ 161 (198)
T PRK00377 160 NI 161 (198)
T ss_pred Hc
Confidence 54
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.5e-13 Score=129.51 Aligned_cols=158 Identities=21% Similarity=0.208 Sum_probs=111.1
Q ss_pred cchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccc
Q 009708 321 DESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400 (528)
Q Consensus 321 d~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~ 400 (528)
...+.++...+...++.+|||+|||+|..+..++.. ..+|+++|+++.+++.+++|++.+++. ++++++|.....
T Consensus 5 ~~d~~~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~--~~~~~~d~~~~~ 79 (179)
T TIGR00537 5 AEDSLLLEANLRELKPDDVLEIGAGTGLVAIRLKGK---GKCILTTDINPFAVKELRENAKLNNVG--LDVVMTDLFKGV 79 (179)
T ss_pred CccHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHHcCCc--eEEEEccccccc
Confidence 344566666666667789999999999999999875 238999999999999999999988863 788999987643
Q ss_pred ccCCCCCCEEEEcCCCCCCcc-ccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHH
Q 009708 401 DNSTVKCDKVLLDAPCSGLGV-LSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEA 479 (528)
Q Consensus 401 ~~~~~~fD~Vl~D~Pcsg~G~-~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~ 479 (528)
..+||.|+++||+..... ...++...+... ........+.++++.+.++|||||++++.+++... ...+..
T Consensus 80 ---~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~---~~~~~~ 151 (179)
T TIGR00537 80 ---RGKFDVILFNPPYLPLEDDLRRGDWLDVAID--GGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNG---EPDTFD 151 (179)
T ss_pred ---CCcccEEEECCCCCCCcchhcccchhhhhhh--cCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCC---hHHHHH
Confidence 258999999999943221 111111111000 00011244678899999999999999988876543 344566
Q ss_pred HHhhCCCceEecC
Q 009708 480 FLLRHPEFSIDPA 492 (528)
Q Consensus 480 ~l~~~~~~~~~~~ 492 (528)
++++. +|....+
T Consensus 152 ~l~~~-gf~~~~~ 163 (179)
T TIGR00537 152 KLDER-GFRYEIV 163 (179)
T ss_pred HHHhC-CCeEEEE
Confidence 77665 4655443
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.4e-13 Score=131.43 Aligned_cols=127 Identities=27% Similarity=0.430 Sum_probs=112.0
Q ss_pred ccccceeEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEE
Q 009708 311 LLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIR 390 (528)
Q Consensus 311 ~~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~ 390 (528)
.|+.+--++..+.+.+++..+++.||++|||.|+|+|..|..||..+++.|+|+.+|+.++.++.|++|++..|+.++++
T Consensus 70 ~~~R~tQiIyPKD~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~ 149 (256)
T COG2519 70 SMKRRTQIIYPKDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVT 149 (256)
T ss_pred hCcCCCceecCCCHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceE
Confidence 37777777778888889999999999999999999999999999988889999999999999999999999999998899
Q ss_pred EEcCccccccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEE-EEcC
Q 009708 391 TIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV-YSTC 466 (528)
Q Consensus 391 ~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lv-ysTc 466 (528)
+..+|..+.... ..||+|++|.|- .| +.++++...|||||.++ |+.|
T Consensus 150 ~~~~Dv~~~~~~--~~vDav~LDmp~------------PW---------------~~le~~~~~Lkpgg~~~~y~P~ 197 (256)
T COG2519 150 LKLGDVREGIDE--EDVDAVFLDLPD------------PW---------------NVLEHVSDALKPGGVVVVYSPT 197 (256)
T ss_pred EEeccccccccc--cccCEEEEcCCC------------hH---------------HHHHHHHHHhCCCcEEEEEcCC
Confidence 999999887654 489999999886 24 35899999999999876 4444
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.4e-13 Score=132.71 Aligned_cols=144 Identities=24% Similarity=0.404 Sum_probs=103.9
Q ss_pred cceeEeecchHHHHHHhc---CCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEE
Q 009708 314 EGLCAVQDESAGLVVAVV---DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIR 390 (528)
Q Consensus 314 ~G~~~~Qd~~s~l~~~~l---~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~ 390 (528)
.|.|..|..+ .++...+ .+.++++|||+|||+|..+..++.. +.++|+++|+++.+++.+++|++.++.. ++
T Consensus 13 ~g~~~p~~ds-~~l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~--~~~~v~~vD~s~~~l~~a~~n~~~~~~~--~~ 87 (223)
T PRK14967 13 PGVYRPQEDT-QLLADALAAEGLGPGRRVLDLCTGSGALAVAAAAA--GAGSVTAVDISRRAVRSARLNALLAGVD--VD 87 (223)
T ss_pred CCCcCCCCcH-HHHHHHHHhcccCCCCeEEEecCCHHHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHHhCCe--eE
Confidence 3445555544 3444333 4677889999999999999998875 3459999999999999999999998874 78
Q ss_pred EEcCccccccccCCCCCCEEEEcCCCCC---CccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 391 TIHADLRTFADNSTVKCDKVLLDAPCSG---LGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 391 ~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg---~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
++++|+..... ..+||+|++|||+.. .+...+.++..|....+. ...+..+++.+.++||+||++++...+
T Consensus 88 ~~~~d~~~~~~--~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~a~~~Lk~gG~l~~~~~~ 161 (223)
T PRK14967 88 VRRGDWARAVE--FRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDG----RAVLDRLCDAAPALLAPGGSLLLVQSE 161 (223)
T ss_pred EEECchhhhcc--CCCeeEEEECCCCCCCCcccccccChhHhhhCCCcH----HHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 88999876432 368999999998742 233334444445422222 234567899999999999999975444
Q ss_pred C
Q 009708 468 I 468 (528)
Q Consensus 468 ~ 468 (528)
.
T Consensus 162 ~ 162 (223)
T PRK14967 162 L 162 (223)
T ss_pred c
Confidence 4
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.1e-13 Score=132.86 Aligned_cols=117 Identities=23% Similarity=0.422 Sum_probs=95.4
Q ss_pred HHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCC
Q 009708 326 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 405 (528)
Q Consensus 326 l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~ 405 (528)
.++..+...+|.+|||+|||||-.++.+++..+ .++|+++|+|+.||+.+++.+...|..+ ++++++|+.+++. ...
T Consensus 42 ~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~LPf-~D~ 118 (238)
T COG2226 42 ALISLLGIKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENLPF-PDN 118 (238)
T ss_pred HHHHhhCCCCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhhCCC-CCC
Confidence 345555666899999999999999999999866 7999999999999999999999999887 9999999999884 468
Q ss_pred CCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 406 ~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
+||+|.+ +.|+ +.-+ ++ .+.|++++++|||||+++...-+
T Consensus 119 sFD~vt~-----~fgl-rnv~---------d~-------~~aL~E~~RVlKpgG~~~vle~~ 158 (238)
T COG2226 119 SFDAVTI-----SFGL-RNVT---------DI-------DKALKEMYRVLKPGGRLLVLEFS 158 (238)
T ss_pred ccCEEEe-----eehh-hcCC---------CH-------HHHHHHHHHhhcCCeEEEEEEcC
Confidence 9999986 2333 2211 22 34599999999999988854433
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.3e-13 Score=132.19 Aligned_cols=120 Identities=16% Similarity=0.228 Sum_probs=95.8
Q ss_pred ceeEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcC
Q 009708 315 GLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA 394 (528)
Q Consensus 315 G~~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~ 394 (528)
|....+......+...+.+++|++|||+|||+|..+..++...+..++|+++|+++.+++.+++|++++|+++ ++++++
T Consensus 57 ~~~~~~p~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~-v~~~~~ 135 (215)
T TIGR00080 57 GQTISAPHMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDN-VIVIVG 135 (215)
T ss_pred CCEechHHHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCC-eEEEEC
Confidence 3333333334566677888999999999999999999999986656889999999999999999999999975 899999
Q ss_pred ccccccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 395 DLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 395 D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
|+...... ..+||+|++++++.. +...+.+.|+|||+|++.
T Consensus 136 d~~~~~~~-~~~fD~Ii~~~~~~~----------------------------~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 136 DGTQGWEP-LAPYDRIYVTAAGPK----------------------------IPEALIDQLKEGGILVMP 176 (215)
T ss_pred CcccCCcc-cCCCCEEEEcCCccc----------------------------ccHHHHHhcCcCcEEEEE
Confidence 99765432 357999999877621 234456789999999964
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.2e-13 Score=137.83 Aligned_cols=125 Identities=21% Similarity=0.262 Sum_probs=95.5
Q ss_pred CeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcCCC
Q 009708 337 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPC 416 (528)
Q Consensus 337 ~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~Pc 416 (528)
.+|||+|||+|..++.++... +..+|+|+|+|+.+++.+++|++.+|+.++++++++|+....+ ..+||+|++|||+
T Consensus 135 ~~VLDlG~GsG~iai~la~~~-p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~--~~~fDlIvsNPPy 211 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAF-PDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALP--GRRYDLIVSNPPY 211 (307)
T ss_pred CEEEEEechhhHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCC--CCCccEEEECCCC
Confidence 689999999999999999874 4579999999999999999999999987779999999865432 2579999999999
Q ss_pred CCCccccCC-chhhccCCH--HHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 417 SGLGVLSKR-ADLRWNRRL--EDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 417 sg~G~~~~~-pd~~~~~~~--~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
.+.+.+... ++.++.... ..-......++.++..+.++|+|||.+++.
T Consensus 212 i~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E 262 (307)
T PRK11805 212 VDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE 262 (307)
T ss_pred CCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 876554321 122110000 000123356788999999999999999864
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.2e-12 Score=125.96 Aligned_cols=113 Identities=24% Similarity=0.356 Sum_probs=86.1
Q ss_pred HHHHHHh--cCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccc-
Q 009708 324 AGLVVAV--VDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA- 400 (528)
Q Consensus 324 s~l~~~~--l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~- 400 (528)
+.++..+ +++.+|++|||+|||+|.++..++..++ .++|+|+|+++.+++.+.++++.. .| +.++.+|+....
T Consensus 59 ~~ll~~~~~l~i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~--~n-v~~i~~D~~~~~~ 134 (226)
T PRK04266 59 AAILKGLKNFPIKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEER--KN-IIPILADARKPER 134 (226)
T ss_pred HHHHhhHhhCCCCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhc--CC-cEEEECCCCCcch
Confidence 3444433 7888999999999999999999999875 689999999999999888887653 44 788899987521
Q ss_pred -ccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 401 -DNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 401 -~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
....++||.|++|.+- |+ . ...+|.++.++|||||.|+++
T Consensus 135 ~~~l~~~~D~i~~d~~~---------p~--------~-------~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 135 YAHVVEKVDVIYQDVAQ---------PN--------Q-------AEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred hhhccccCCEEEECCCC---------hh--------H-------HHHHHHHHHHhcCCCcEEEEE
Confidence 1113569999987442 10 0 123588999999999999983
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.6e-13 Score=138.31 Aligned_cols=88 Identities=23% Similarity=0.249 Sum_probs=73.7
Q ss_pred HhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCC
Q 009708 329 AVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCD 408 (528)
Q Consensus 329 ~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD 408 (528)
.++...++.+|||+|||+|..++.++.. ..+|+|+|+++.+++.+++|++.+|+++ ++++++|+.++.......||
T Consensus 167 ~~l~~~~~~~VLDl~cG~G~~sl~la~~---~~~V~gvD~s~~av~~A~~n~~~~~l~~-v~~~~~D~~~~~~~~~~~~D 242 (315)
T PRK03522 167 DWVRELPPRSMWDLFCGVGGFGLHCATP---GMQLTGIEISAEAIACAKQSAAELGLTN-VQFQALDSTQFATAQGEVPD 242 (315)
T ss_pred HHHHhcCCCEEEEccCCCCHHHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEEcCHHHHHHhcCCCCe
Confidence 3444345789999999999999999984 4699999999999999999999999964 99999999876543335799
Q ss_pred EEEEcCCCCCCc
Q 009708 409 KVLLDAPCSGLG 420 (528)
Q Consensus 409 ~Vl~D~Pcsg~G 420 (528)
.|++|||+.|.+
T Consensus 243 ~Vv~dPPr~G~~ 254 (315)
T PRK03522 243 LVLVNPPRRGIG 254 (315)
T ss_pred EEEECCCCCCcc
Confidence 999999997633
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.5e-13 Score=128.06 Aligned_cols=112 Identities=21% Similarity=0.347 Sum_probs=91.7
Q ss_pred HHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC
Q 009708 324 AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS 403 (528)
Q Consensus 324 s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~ 403 (528)
...+.+.+.+.++++|||+|||+|..+..+++.++..++|+++|+++.+++.+++|++.+++.++++++++|+......
T Consensus 61 ~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~- 139 (205)
T PRK13944 61 VAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK- 139 (205)
T ss_pred HHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc-
Confidence 4455667788899999999999999999999987666899999999999999999999999877789999999765432
Q ss_pred CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 404 ~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
..+||.|+++.... .+...+.+.|+|||+|++.
T Consensus 140 ~~~fD~Ii~~~~~~----------------------------~~~~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 140 HAPFDAIIVTAAAS----------------------------TIPSALVRQLKDGGVLVIP 172 (205)
T ss_pred CCCccEEEEccCcc----------------------------hhhHHHHHhcCcCcEEEEE
Confidence 35899999976541 0123456789999999864
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.47 E-value=9.7e-14 Score=136.13 Aligned_cols=118 Identities=23% Similarity=0.368 Sum_probs=82.6
Q ss_pred HHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCC
Q 009708 326 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 405 (528)
Q Consensus 326 l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~ 405 (528)
.++..+.+.+|.+|||+|||||-.+..+++.+++.++|+++|+|+.+++.++++++..+..+ |+++++|+.+++.. .+
T Consensus 38 ~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~-i~~v~~da~~lp~~-d~ 115 (233)
T PF01209_consen 38 KLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQN-IEFVQGDAEDLPFP-DN 115 (233)
T ss_dssp HHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--S-EEEEE-BTTB--S--TT
T ss_pred HHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCC-eeEEEcCHHHhcCC-CC
Confidence 44556678889999999999999999999887778899999999999999999999998874 99999999998743 47
Q ss_pred CCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 406 ~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
+||.|++ +.|+ +.-|| +.+.|+++.++|||||++++...+
T Consensus 116 sfD~v~~-----~fgl-rn~~d----------------~~~~l~E~~RVLkPGG~l~ile~~ 155 (233)
T PF01209_consen 116 SFDAVTC-----SFGL-RNFPD----------------RERALREMYRVLKPGGRLVILEFS 155 (233)
T ss_dssp -EEEEEE-----ES-G-GG-SS----------------HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred ceeEEEH-----HhhH-HhhCC----------------HHHHHHHHHHHcCCCeEEEEeecc
Confidence 8999985 3333 22221 234599999999999999976544
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.3e-12 Score=132.27 Aligned_cols=128 Identities=20% Similarity=0.239 Sum_probs=96.3
Q ss_pred CeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcCCC
Q 009708 337 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPC 416 (528)
Q Consensus 337 ~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~Pc 416 (528)
.+|||+|||+|..++.++...+ ..+|+|+|+|+.+++.+++|++++++.++++++++|+..... ..+||+|++|||+
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~-~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~--~~~fDlIvsNPPy 192 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFP-NAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLA--GQKIDIIVSNPPY 192 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCc--CCCccEEEECCCC
Confidence 6899999999999999998743 579999999999999999999999997679999999876432 2379999999999
Q ss_pred CCCccccCCchhhccCCHHHH---HHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 417 SGLGVLSKRADLRWNRRLEDM---EELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 417 sg~G~~~~~pd~~~~~~~~~~---~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
.....+...++.........+ ......++.++..+.++|+|||.|++..+.
T Consensus 193 i~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~ 246 (284)
T TIGR00536 193 IDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGN 246 (284)
T ss_pred CCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECc
Confidence 655432222222110000000 123356788999999999999999976553
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.5e-13 Score=122.17 Aligned_cols=111 Identities=20% Similarity=0.300 Sum_probs=90.9
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEc
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLD 413 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D 413 (528)
+.+.+|||+|||+|..+..++..+.+.++++++|+|+.+++.++++++..++++ ++++++|+.++.....++||+|+++
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~n-i~~~~~d~~~l~~~~~~~~D~I~~~ 80 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDN-IEFIQGDIEDLPQELEEKFDIIISN 80 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTT-EEEEESBTTCGCGCSSTTEEEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccc-cceEEeehhccccccCCCeeEEEEc
Confidence 457899999999999999999666667899999999999999999999999994 9999999999542212689999998
Q ss_pred CCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 414 APCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 414 ~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
.++.. . . ....+++.+.++|++||+++...+.
T Consensus 81 ~~l~~------~---------~-------~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 81 GVLHH------F---------P-------DPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp STGGG------T---------S-------HHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred Cchhh------c---------c-------CHHHHHHHHHHHcCCCcEEEEEECC
Confidence 76611 0 1 1234688999999999999987776
|
... |
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.7e-12 Score=113.75 Aligned_cols=112 Identities=27% Similarity=0.419 Sum_probs=89.6
Q ss_pred HHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCC
Q 009708 327 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVK 406 (528)
Q Consensus 327 ~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~ 406 (528)
+...+.+.++.+|||+|||+|..+..+++.++ .++|+++|+++.+++.++++++.+++.+ ++++.+|+.........+
T Consensus 11 ~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 88 (124)
T TIGR02469 11 TLSKLRLRPGDVLWDIGAGSGSITIEAARLVP-NGRVYAIERNPEALRLIERNARRFGVSN-IVIVEGDAPEALEDSLPE 88 (124)
T ss_pred HHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCC-CceEEEEcCCHHHHHHHHHHHHHhCCCc-eEEEeccccccChhhcCC
Confidence 44556677788999999999999999998754 4799999999999999999999998875 888888876533323468
Q ss_pred CCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 407 CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 407 fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
||.|+++.+- . .+.++++.+.++|||||+++...
T Consensus 89 ~D~v~~~~~~------------------~-------~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 89 PDRVFIGGSG------------------G-------LLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred CCEEEECCcc------------------h-------hHHHHHHHHHHHcCCCCEEEEEe
Confidence 9999985421 0 12367999999999999999653
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.5e-12 Score=124.52 Aligned_cols=125 Identities=20% Similarity=0.268 Sum_probs=99.9
Q ss_pred ceeEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcC
Q 009708 315 GLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA 394 (528)
Q Consensus 315 G~~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~ 394 (528)
|.-..|.+...++...+.+.++++|||+|||+|..++.++.. .+.++|+++|+++.+++.+++|++++++.+ ++++++
T Consensus 20 ~~p~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~-~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~-v~~~~~ 97 (196)
T PRK07402 20 GIPLTKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLL-CPKGRVIAIERDEEVVNLIRRNCDRFGVKN-VEVIEG 97 (196)
T ss_pred CCCCCHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHhCCCC-eEEEEC
Confidence 444667778888888888889999999999999999999875 345899999999999999999999999875 899999
Q ss_pred ccccccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 395 DLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 395 D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
|+..........+|.|++|... . ...+++.+.++|+|||++++.+++
T Consensus 98 d~~~~~~~~~~~~d~v~~~~~~-------------------~-------~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 98 SAPECLAQLAPAPDRVCIEGGR-------------------P-------IKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred chHHHHhhCCCCCCEEEEECCc-------------------C-------HHHHHHHHHHhcCCCeEEEEEeec
Confidence 9865322222357888775311 0 134689999999999999988875
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.4e-13 Score=131.12 Aligned_cols=126 Identities=21% Similarity=0.381 Sum_probs=96.1
Q ss_pred cceeEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEc
Q 009708 314 EGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH 393 (528)
Q Consensus 314 ~G~~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~ 393 (528)
.+--++....+.++...+++.||++||+.|+|+|..|..++..+++.|+|+.+|+.+++++.|++|++.+|+.+++++.+
T Consensus 19 rrtQIiYpkD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~ 98 (247)
T PF08704_consen 19 RRTQIIYPKDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHH 98 (247)
T ss_dssp SSS----HHHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEE
T ss_pred CCcceeeCchHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEe
Confidence 33334445556677888999999999999999999999999999999999999999999999999999999987899999
Q ss_pred Cccccccc--cCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccC-cCCCEEE-EEcC
Q 009708 394 ADLRTFAD--NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLV-KPGGVLV-YSTC 466 (528)
Q Consensus 394 ~D~~~~~~--~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~L-kpGG~Lv-ysTc 466 (528)
.|+..-.. .....||.|++|.|. .|. .+.++.+.| |+||+|+ |+-|
T Consensus 99 ~Dv~~~g~~~~~~~~~DavfLDlp~------------Pw~---------------~i~~~~~~L~~~gG~i~~fsP~ 148 (247)
T PF08704_consen 99 RDVCEEGFDEELESDFDAVFLDLPD------------PWE---------------AIPHAKRALKKPGGRICCFSPC 148 (247)
T ss_dssp S-GGCG--STT-TTSEEEEEEESSS------------GGG---------------GHHHHHHHE-EEEEEEEEEESS
T ss_pred cceecccccccccCcccEEEEeCCC------------HHH---------------HHHHHHHHHhcCCceEEEECCC
Confidence 99975322 223679999999997 343 488889999 8999875 5544
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.3e-12 Score=126.56 Aligned_cols=119 Identities=16% Similarity=0.200 Sum_probs=94.0
Q ss_pred ceeEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcC
Q 009708 315 GLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA 394 (528)
Q Consensus 315 G~~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~ 394 (528)
|....+......+...+++++|++|||+|||+|..+..+++.++..++|+++|+++.+++.++++++.+|+.+ ++++++
T Consensus 56 g~~~~~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~-v~~~~g 134 (212)
T PRK13942 56 GQTISAIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDN-VEVIVG 134 (212)
T ss_pred CCEeCcHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-eEEEEC
Confidence 4444555555667778889999999999999999999999887666899999999999999999999999875 899999
Q ss_pred ccccccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEE
Q 009708 395 DLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463 (528)
Q Consensus 395 D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvy 463 (528)
|+...... ...||+|+++.... + +.....+.|||||+|+.
T Consensus 135 d~~~~~~~-~~~fD~I~~~~~~~------------------~----------~~~~l~~~LkpgG~lvi 174 (212)
T PRK13942 135 DGTLGYEE-NAPYDRIYVTAAGP------------------D----------IPKPLIEQLKDGGIMVI 174 (212)
T ss_pred CcccCCCc-CCCcCEEEECCCcc------------------c----------chHHHHHhhCCCcEEEE
Confidence 98764322 36799999864320 0 12334567999999985
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.1e-12 Score=134.96 Aligned_cols=163 Identities=20% Similarity=0.163 Sum_probs=108.2
Q ss_pred ceeEeecchHHHHHHhcC-CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEc
Q 009708 315 GLCAVQDESAGLVVAVVD-PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH 393 (528)
Q Consensus 315 G~~~~Qd~~s~l~~~~l~-~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~ 393 (528)
|.++....+..++..++. ..++.+|||+|||+|..++.++... +..+|+|+|+|+.+++.+++|++.++. ++++++
T Consensus 230 ~vLIPRpeTE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~-p~a~VtAVDiS~~ALe~AreNa~~~g~--rV~fi~ 306 (423)
T PRK14966 230 NVLIPRPETEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALER-PDAFVRASDISPPALETARKNAADLGA--RVEFAH 306 (423)
T ss_pred CccCCCccHHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEE
Confidence 333333334444444433 3456799999999999999998763 467999999999999999999999886 489999
Q ss_pred CccccccccCCCCCCEEEEcCCCCCCccccCCc-hhhccCC--HHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCc
Q 009708 394 ADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRA-DLRWNRR--LEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDP 470 (528)
Q Consensus 394 ~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~p-d~~~~~~--~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~ 470 (528)
+|+.+.......+||+|++|||+...+.....+ ++++... ...-......++++++.+.++|+|||.+++.. ..
T Consensus 307 gDl~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi---G~ 383 (423)
T PRK14966 307 GSWFDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH---GF 383 (423)
T ss_pred cchhccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE---Cc
Confidence 998654211235799999999996654322211 1111000 00112334567889999999999999987432 22
Q ss_pred hhhHHHHHHHHhhC
Q 009708 471 EENEERVEAFLLRH 484 (528)
Q Consensus 471 ~Ene~~v~~~l~~~ 484 (528)
.. .+.+..++.+.
T Consensus 384 ~Q-~e~V~~ll~~~ 396 (423)
T PRK14966 384 DQ-GAAVRGVLAEN 396 (423)
T ss_pred cH-HHHHHHHHHHC
Confidence 22 33455666654
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.3e-12 Score=122.33 Aligned_cols=134 Identities=21% Similarity=0.274 Sum_probs=102.0
Q ss_pred eecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccc
Q 009708 319 VQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 398 (528)
Q Consensus 319 ~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~ 398 (528)
.++....++...+.+.++.+|||+|||+|..++.+++.. +.++|+++|+++.+++.+++|++++++.+ ++++++|+..
T Consensus 15 ~~~~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~n~~~~~~~~-i~~~~~d~~~ 92 (187)
T PRK08287 15 TKEEVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQF-PSLQVTAIERNPDALRLIKENRQRFGCGN-IDIIPGEAPI 92 (187)
T ss_pred chHHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCCCC-eEEEecCchh
Confidence 345555666677788889999999999999999999874 45799999999999999999999998875 8999988743
Q ss_pred ccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHH
Q 009708 399 FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVE 478 (528)
Q Consensus 399 ~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~ 478 (528)
. ...+||+|+++... + .+ ..+++.+.+.|+|||++++.... .++...+.
T Consensus 93 ~---~~~~~D~v~~~~~~---~---------------~~-------~~~l~~~~~~Lk~gG~lv~~~~~---~~~~~~~~ 141 (187)
T PRK08287 93 E---LPGKADAIFIGGSG---G---------------NL-------TAIIDWSLAHLHPGGRLVLTFIL---LENLHSAL 141 (187)
T ss_pred h---cCcCCCEEEECCCc---c---------------CH-------HHHHHHHHHhcCCCeEEEEEEec---HhhHHHHH
Confidence 2 23579999985321 0 11 23588899999999999975432 34455666
Q ss_pred HHHhhCC
Q 009708 479 AFLLRHP 485 (528)
Q Consensus 479 ~~l~~~~ 485 (528)
.+++++.
T Consensus 142 ~~l~~~g 148 (187)
T PRK08287 142 AHLEKCG 148 (187)
T ss_pred HHHHHCC
Confidence 7777653
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.8e-12 Score=126.12 Aligned_cols=120 Identities=22% Similarity=0.194 Sum_probs=98.2
Q ss_pred HHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC
Q 009708 324 AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS 403 (528)
Q Consensus 324 s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~ 403 (528)
.+++..++...++.+|||+|||+|.-++.++..+.+.++|+++|+++++++.+++|++++|+.++++++.+|+.+..+..
T Consensus 57 g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l 136 (234)
T PLN02781 57 GLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQL 136 (234)
T ss_pred HHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHH
Confidence 44555555566678999999999999999998887789999999999999999999999999888999999998764321
Q ss_pred -----CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCC
Q 009708 404 -----TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 468 (528)
Q Consensus 404 -----~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~ 468 (528)
.++||.|++|++- ..+..+++.+.++|+|||.|+...+-+
T Consensus 137 ~~~~~~~~fD~VfiDa~k-------------------------~~y~~~~~~~~~ll~~GG~ii~dn~l~ 181 (234)
T PLN02781 137 LNNDPKPEFDFAFVDADK-------------------------PNYVHFHEQLLKLVKVGGIIAFDNTLW 181 (234)
T ss_pred HhCCCCCCCCEEEECCCH-------------------------HHHHHHHHHHHHhcCCCeEEEEEcCCc
Confidence 3589999999764 123346888999999999998766543
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.3e-12 Score=134.24 Aligned_cols=127 Identities=14% Similarity=0.061 Sum_probs=99.1
Q ss_pred cchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCC--ccEEEEcCcccc
Q 009708 321 DESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN--SVIRTIHADLRT 398 (528)
Q Consensus 321 d~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~--~~i~~~~~D~~~ 398 (528)
|.++.++...+....+.+|||+|||+|..++.+++. .+..+|+++|+|+.+++.+++|++.++.. .+++++..|+..
T Consensus 214 D~GtrllL~~lp~~~~~~VLDLGCGtGvi~i~la~~-~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~ 292 (378)
T PRK15001 214 DIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDK-NPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS 292 (378)
T ss_pred ChHHHHHHHhCCcccCCeEEEEeccccHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccc
Confidence 778888888887665679999999999999999987 45689999999999999999999988754 257888888865
Q ss_pred ccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 399 FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 399 ~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
... ..+||+|++|||+.-... .+.. .-.+++..+.+.|+|||.|++..-.
T Consensus 293 ~~~--~~~fDlIlsNPPfh~~~~----------~~~~-------ia~~l~~~a~~~LkpGG~L~iV~nr 342 (378)
T PRK15001 293 GVE--PFRFNAVLCNPPFHQQHA----------LTDN-------VAWEMFHHARRCLKINGELYIVANR 342 (378)
T ss_pred cCC--CCCEEEEEECcCcccCcc----------CCHH-------HHHHHHHHHHHhcccCCEEEEEEec
Confidence 332 357999999999832111 0111 1235799999999999999877533
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.8e-12 Score=134.17 Aligned_cols=129 Identities=15% Similarity=0.184 Sum_probs=101.7
Q ss_pred cchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccc
Q 009708 321 DESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400 (528)
Q Consensus 321 d~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~ 400 (528)
|.++.++...+......+|||+|||+|..+..++++ .+..+|+++|+|+.+++.+++|++.+++.. +++..|+....
T Consensus 182 D~gt~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~-~p~~~v~~vDis~~Al~~A~~nl~~n~l~~--~~~~~D~~~~~ 258 (342)
T PRK09489 182 DVGSQLLLSTLTPHTKGKVLDVGCGAGVLSAVLARH-SPKIRLTLSDVSAAALESSRATLAANGLEG--EVFASNVFSDI 258 (342)
T ss_pred CHHHHHHHHhccccCCCeEEEeccCcCHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCCCC--EEEEccccccc
Confidence 667788877776555668999999999999999987 345689999999999999999999999863 56778876532
Q ss_pred ccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchh
Q 009708 401 DNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEE 472 (528)
Q Consensus 401 ~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~E 472 (528)
.++||.|++|||.- .|. ......-.+++..+.++|||||.|++..+++.+.+
T Consensus 259 ---~~~fDlIvsNPPFH-~g~----------------~~~~~~~~~~i~~a~~~LkpgG~L~iVan~~l~y~ 310 (342)
T PRK09489 259 ---KGRFDMIISNPPFH-DGI----------------QTSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYP 310 (342)
T ss_pred ---CCCccEEEECCCcc-CCc----------------cccHHHHHHHHHHHHHhcCcCCEEEEEEeCCCChH
Confidence 36899999999972 111 00012235679999999999999999988887765
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.41 E-value=4e-12 Score=128.07 Aligned_cols=165 Identities=20% Similarity=0.187 Sum_probs=106.8
Q ss_pred cceeEeecchHHHHHHhc-CCCCCC-eEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEE
Q 009708 314 EGLCAVQDESAGLVVAVV-DPQPGQ-SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRT 391 (528)
Q Consensus 314 ~G~~~~Qd~~s~l~~~~l-~~~~g~-~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~ 391 (528)
.+.++....+..++..++ ...... +|||+|||+|..++.++... +...|+|+|+|+.+++.|++|++++|+. ++.+
T Consensus 87 ~~vliPr~dTe~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~-~~~~V~a~Dis~~Al~~A~~Na~~~~l~-~~~~ 164 (280)
T COG2890 87 EGVLIPRPDTELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEG-PDAEVIAVDISPDALALARENAERNGLV-RVLV 164 (280)
T ss_pred CCceecCCchHHHHHHHHHhhhhcCCcEEEecCChHHHHHHHHhhC-cCCeEEEEECCHHHHHHHHHHHHHcCCc-cEEE
Confidence 444555444544444432 222222 79999999999999999874 3479999999999999999999999984 4666
Q ss_pred EcCccccccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHH----HHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 392 IHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLE----DMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 392 ~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~----~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
+.+|.+.... ++||+|++|||+-..-.....|+.... .+. .-....+..++++..+..+|+|||.+++- ++
T Consensus 165 ~~~dlf~~~~---~~fDlIVsNPPYip~~~~~~~~~~~~~-EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le-~g 239 (280)
T COG2890 165 VQSDLFEPLR---GKFDLIVSNPPYIPAEDPELLPEVVRY-EPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILE-IG 239 (280)
T ss_pred EeeecccccC---CceeEEEeCCCCCCCcccccChhhhcc-CHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEE-EC
Confidence 7667765432 489999999999433211111211100 000 00134567889999999999999988743 33
Q ss_pred CCchhhHHHHHHHHhhCCCce
Q 009708 468 IDPEENEERVEAFLLRHPEFS 488 (528)
Q Consensus 468 ~~~~Ene~~v~~~l~~~~~~~ 488 (528)
... .+ .|.+.+.+...|.
T Consensus 240 ~~q--~~-~v~~~~~~~~~~~ 257 (280)
T COG2890 240 LTQ--GE-AVKALFEDTGFFE 257 (280)
T ss_pred CCc--HH-HHHHHHHhcCCce
Confidence 333 33 3445555543244
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.4e-12 Score=127.35 Aligned_cols=125 Identities=18% Similarity=0.206 Sum_probs=103.3
Q ss_pred ecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccc
Q 009708 320 QDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 399 (528)
Q Consensus 320 Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~ 399 (528)
.....+++..++...+..+|||+|+|+|..|+++|..+++.|+|+++|.++++++.+++|+++.|+.++|+++.+|+.+.
T Consensus 103 ~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~ 182 (278)
T PLN02476 103 SPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAES 182 (278)
T ss_pred CHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH
Confidence 34445566666666667899999999999999999988878899999999999999999999999998899999999876
Q ss_pred cccC-----CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCC
Q 009708 400 ADNS-----TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSID 469 (528)
Q Consensus 400 ~~~~-----~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~ 469 (528)
.+.. .++||.||+|++- ..+...++.+.++|+|||.||+-.+-++
T Consensus 183 L~~l~~~~~~~~FD~VFIDa~K-------------------------~~Y~~y~e~~l~lL~~GGvIV~DNvL~~ 232 (278)
T PLN02476 183 LKSMIQNGEGSSYDFAFVDADK-------------------------RMYQDYFELLLQLVRVGGVIVMDNVLWH 232 (278)
T ss_pred HHHHHhcccCCCCCEEEECCCH-------------------------HHHHHHHHHHHHhcCCCcEEEEecCccC
Confidence 5432 3579999999875 1245568888999999999997766443
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.8e-12 Score=127.61 Aligned_cols=129 Identities=22% Similarity=0.283 Sum_probs=104.8
Q ss_pred cchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccc
Q 009708 321 DESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400 (528)
Q Consensus 321 d~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~ 400 (528)
|..|+++.+.+....+.+|||+|||.|-.++.+++. .+..+|+-+|+|..+++.+++|++.+++++. .++..|...-.
T Consensus 144 D~GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~-~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~-~v~~s~~~~~v 221 (300)
T COG2813 144 DKGSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKK-SPQAKLTLVDVNARAVESARKNLAANGVENT-EVWASNLYEPV 221 (300)
T ss_pred ChHHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHh-CCCCeEEEEecCHHHHHHHHHhHHHcCCCcc-EEEEecccccc
Confidence 789999999998887779999999999999999998 4578999999999999999999999999974 66777776543
Q ss_pred ccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCch
Q 009708 401 DNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPE 471 (528)
Q Consensus 401 ~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~ 471 (528)
. ++||.|++|||.. .|. ......-.+++..|...|++||.|.+..-...+-
T Consensus 222 ~---~kfd~IisNPPfh-~G~----------------~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y 272 (300)
T COG2813 222 E---GKFDLIISNPPFH-AGK----------------AVVHSLAQEIIAAAARHLKPGGELWIVANRHLPY 272 (300)
T ss_pred c---ccccEEEeCCCcc-CCc----------------chhHHHHHHHHHHHHHhhccCCEEEEEEcCCCCh
Confidence 2 4899999999983 121 1122233468999999999999998776654443
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.40 E-value=5.2e-12 Score=125.02 Aligned_cols=142 Identities=19% Similarity=0.215 Sum_probs=101.0
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDA 414 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~ 414 (528)
.+.+|||+|||+|..+..++...+ ..+++++|+++.+++.++++++.+++++ ++++++|+.... ..++||+|++||
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~-~~~~~~d~~~~~--~~~~fD~Vi~np 162 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERP-DARVTAVDISPEALAVARKNAARLGLDN-VTFLQSDWFEPL--PGGKFDLIVSNP 162 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCe-EEEEECchhccC--cCCceeEEEECC
Confidence 345899999999999999998753 5699999999999999999999999874 899999987633 236899999999
Q ss_pred CCCCCccccCC-chhhccCCHHH---HHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHHHhhC
Q 009708 415 PCSGLGVLSKR-ADLRWNRRLED---MEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRH 484 (528)
Q Consensus 415 Pcsg~G~~~~~-pd~~~~~~~~~---~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~l~~~ 484 (528)
|+...+..... ++++....... -.........+++.+.++|+|||.+++.. +.. ..+.+..++.++
T Consensus 163 Py~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~-~~~---~~~~~~~~l~~~ 232 (251)
T TIGR03534 163 PYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI-GYD---QGEAVRALFEAA 232 (251)
T ss_pred CCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE-Ccc---HHHHHHHHHHhC
Confidence 99876543321 11110000000 01122345678999999999999998753 222 223455666664
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.4e-12 Score=120.48 Aligned_cols=156 Identities=21% Similarity=0.258 Sum_probs=107.8
Q ss_pred HHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCcc-EEEEcCcccccccc
Q 009708 324 AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSV-IRTIHADLRTFADN 402 (528)
Q Consensus 324 s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~-i~~~~~D~~~~~~~ 402 (528)
+.++...+...++.+|||+|||+|..+..++.. ..+|+++|+++.+++.+++++..+++.++ +.++++|+.+...
T Consensus 12 ~~~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~- 87 (188)
T PRK14968 12 SFLLAENAVDKKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFR- 87 (188)
T ss_pred HHHHHHhhhccCCCEEEEEccccCHHHHHHHhh---cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccccc-
Confidence 455556666678889999999999999999986 47999999999999999999999888654 7888888866432
Q ss_pred CCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHHHh
Q 009708 403 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLL 482 (528)
Q Consensus 403 ~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~l~ 482 (528)
...||+|++|+|+...+......+ .|......-.........+++++.++|||||.+++..++....+ .+..++.
T Consensus 88 -~~~~d~vi~n~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~---~l~~~~~ 162 (188)
T PRK14968 88 -GDKFDVILFNPPYLPTEEEEEWDD-WLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGED---EVLEYLE 162 (188)
T ss_pred -ccCceEEEECCCcCCCCchhhhhh-hhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHH---HHHHHHH
Confidence 247999999999854321111000 00000000001123456789999999999999988777765432 3445666
Q ss_pred hCCCceE
Q 009708 483 RHPEFSI 489 (528)
Q Consensus 483 ~~~~~~~ 489 (528)
+. +|++
T Consensus 163 ~~-g~~~ 168 (188)
T PRK14968 163 KL-GFEA 168 (188)
T ss_pred HC-CCee
Confidence 54 4544
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.5e-12 Score=119.57 Aligned_cols=106 Identities=20% Similarity=0.250 Sum_probs=88.0
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDA 414 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~ 414 (528)
++.+|||+|||+|..++.++... +.++|+++|+++.+++.++++++.+++++ ++++++|+.++.. .++||+|+++.
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~-~~~~V~giD~s~~~l~~A~~~~~~~~l~~-i~~~~~d~~~~~~--~~~fDlV~~~~ 120 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIAR-PELKVTLVDSLGKKIAFLREVAAELGLKN-VTVVHGRAEEFGQ--EEKFDVVTSRA 120 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHcCCCC-EEEEeccHhhCCC--CCCccEEEEcc
Confidence 47899999999999999998764 46899999999999999999999999987 9999999988654 46899999852
Q ss_pred CCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCc
Q 009708 415 PCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDP 470 (528)
Q Consensus 415 Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~ 470 (528)
- ..+ ..+++.++++|||||++++.......
T Consensus 121 ~-------------------~~~-------~~~l~~~~~~LkpGG~lv~~~~~~~~ 150 (187)
T PRK00107 121 V-------------------ASL-------SDLVELCLPLLKPGGRFLALKGRDPE 150 (187)
T ss_pred c-------------------cCH-------HHHHHHHHHhcCCCeEEEEEeCCChH
Confidence 0 011 34689999999999999987655433
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.1e-12 Score=129.50 Aligned_cols=128 Identities=20% Similarity=0.253 Sum_probs=104.5
Q ss_pred cchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcC-ccccc
Q 009708 321 DESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA-DLRTF 399 (528)
Q Consensus 321 d~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~-D~~~~ 399 (528)
..-|..++.+..+++|+.|||-+||||++.+.+... +.+++|+|++..++.-++.|++.+|+++ ..+... |++++
T Consensus 183 P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~---G~~viG~Did~~mv~gak~Nl~~y~i~~-~~~~~~~Da~~l 258 (347)
T COG1041 183 PRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLM---GARVIGSDIDERMVRGAKINLEYYGIED-YPVLKVLDATNL 258 (347)
T ss_pred HHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhc---CceEeecchHHHHHhhhhhhhhhhCcCc-eeEEEecccccC
Confidence 345778888889999999999999999999988754 5799999999999999999999999886 555555 99888
Q ss_pred cccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcC
Q 009708 400 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466 (528)
Q Consensus 400 ~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTc 466 (528)
+-. ..+||.|.+|||+.-+.. .....+.+++.++|+.+.+.||+||++|+.+-
T Consensus 259 pl~-~~~vdaIatDPPYGrst~-------------~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 259 PLR-DNSVDAIATDPPYGRSTK-------------IKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred CCC-CCccceEEecCCCCcccc-------------cccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 732 336999999999942221 11222667789999999999999999998765
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=99.38 E-value=1e-11 Score=117.08 Aligned_cols=129 Identities=21% Similarity=0.245 Sum_probs=94.3
Q ss_pred cchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCc--------EEEEEcCChHHHHHHHHHHHHcCCCccEEEE
Q 009708 321 DESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQG--------LVYAIDINKGRLRILNETAKLHQVNSVIRTI 392 (528)
Q Consensus 321 d~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~--------~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~ 392 (528)
..-+..++.+.++++|+.|||.+||+|++.+..+....+.. +++|+|+++.+++.+++|++..|+.+.+.+.
T Consensus 14 ~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~ 93 (179)
T PF01170_consen 14 PTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFI 93 (179)
T ss_dssp HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEE
T ss_pred HHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEE
Confidence 33466677778889999999999999999998887654333 3899999999999999999999999889999
Q ss_pred cCccccccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcC
Q 009708 393 HADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466 (528)
Q Consensus 393 ~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTc 466 (528)
+.|+..+.. ..+.+|.|++|||+. . ....-..+.+++.++++.+.+.+++ ..++.++
T Consensus 94 ~~D~~~l~~-~~~~~d~IvtnPPyG---~-----------r~~~~~~~~~ly~~~~~~~~~~l~~--~~v~l~~ 150 (179)
T PF01170_consen 94 QWDARELPL-PDGSVDAIVTNPPYG---R-----------RLGSKKDLEKLYRQFLRELKRVLKP--RAVFLTT 150 (179)
T ss_dssp E--GGGGGG-TTSBSCEEEEE--ST---T-----------SHCHHHHHHHHHHHHHHHHHCHSTT--CEEEEEE
T ss_pred ecchhhccc-ccCCCCEEEECcchh---h-----------hccCHHHHHHHHHHHHHHHHHHCCC--CEEEEEE
Confidence 999999872 346899999999993 1 1123344577899999999999998 3444443
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.6e-11 Score=133.62 Aligned_cols=139 Identities=19% Similarity=0.214 Sum_probs=101.0
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDA 414 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~ 414 (528)
++.+|||+|||+|..++.++..++ ..+|+|+|+|+.+++.+++|++.+++.++++++++|+..... .++||+|++||
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p-~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~--~~~fDlIvsNP 214 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELP-NANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIE--KQKFDFIVSNP 214 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCC-CCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCc--CCCccEEEECC
Confidence 346899999999999999988753 579999999999999999999999987779999999865332 35799999999
Q ss_pred CCCCCccccC--------CchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHHHhhC
Q 009708 415 PCSGLGVLSK--------RADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRH 484 (528)
Q Consensus 415 Pcsg~G~~~~--------~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~l~~~ 484 (528)
|+........ .|...+-- -......++.++..+.++|+|||.+++. +... . .+.+..++.+.
T Consensus 215 PYi~~~~~~~l~~~v~~~EP~~AL~g----g~dGl~~~~~il~~a~~~L~~gG~l~lE-ig~~--q-~~~v~~~~~~~ 284 (506)
T PRK01544 215 PYISHSEKSEMAIETINYEPSIALFA----EEDGLQAYFIIAENAKQFLKPNGKIILE-IGFK--Q-EEAVTQIFLDH 284 (506)
T ss_pred CCCCchhhhhcCchhhccCcHHHhcC----CccHHHHHHHHHHHHHHhccCCCEEEEE-ECCc--h-HHHHHHHHHhc
Confidence 9965443211 11111110 1123456788999999999999999864 3322 2 23445555543
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.1e-12 Score=122.08 Aligned_cols=139 Identities=19% Similarity=0.334 Sum_probs=108.6
Q ss_pred HHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCC-----cEEEEEcCChHHHHHHHHHHHHcCCCcc--EEEEcCcccc
Q 009708 326 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQ-----GLVYAIDINKGRLRILNETAKLHQVNSV--IRTIHADLRT 398 (528)
Q Consensus 326 l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~-----~~v~avD~s~~~l~~~~~n~~~~g~~~~--i~~~~~D~~~ 398 (528)
+.+..+.|..|.+|||+|||+|-.+.-+....+.. ++|+.+|+|+++|..+++++++.++... +.++++|+.+
T Consensus 91 ~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~ 170 (296)
T KOG1540|consen 91 MFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAED 170 (296)
T ss_pred HhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCccc
Confidence 34566788889999999999999999999987654 7999999999999999999988888654 8999999999
Q ss_pred ccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHH
Q 009708 399 FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVE 478 (528)
Q Consensus 399 ~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~ 478 (528)
++ .+..+||...+ +.|+ +.- .++.+ -|++|+++|||||++. |--++.+|.+.+.
T Consensus 171 Lp-Fdd~s~D~yTi-----afGI-RN~---------th~~k-------~l~EAYRVLKpGGrf~---cLeFskv~~~~l~ 224 (296)
T KOG1540|consen 171 LP-FDDDSFDAYTI-----AFGI-RNV---------THIQK-------ALREAYRVLKPGGRFS---CLEFSKVENEPLK 224 (296)
T ss_pred CC-CCCCcceeEEE-----ecce-ecC---------CCHHH-------HHHHHHHhcCCCcEEE---EEEccccccHHHH
Confidence 87 34578998764 4444 221 22322 4999999999999988 7666666656788
Q ss_pred HHHhhCCCceEec
Q 009708 479 AFLLRHPEFSIDP 491 (528)
Q Consensus 479 ~~l~~~~~~~~~~ 491 (528)
+|...+. |++.|
T Consensus 225 ~fy~~ys-f~Vlp 236 (296)
T KOG1540|consen 225 WFYDQYS-FDVLP 236 (296)
T ss_pred HHHHhhh-hhhhc
Confidence 8877653 44444
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.2e-11 Score=116.95 Aligned_cols=125 Identities=14% Similarity=0.180 Sum_probs=93.8
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDA 414 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~ 414 (528)
+|.+|||+|||+|..+..++.. .+.++|+|+|.|+.+++.++++++++|+++ ++++++|+.++.. .++||.|+++.
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~-~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~-i~~i~~d~~~~~~--~~~fD~I~s~~ 117 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIA-RPELKLTLLESNHKKVAFLREVKAELGLNN-VEIVNGRAEDFQH--EEQFDVITSRA 117 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHH-CCCCeEEEEeCcHHHHHHHHHHHHHhCCCC-eEEEecchhhccc--cCCccEEEehh
Confidence 3789999999999999998865 456799999999999999999999999876 9999999988632 36899999863
Q ss_pred CCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHHHhhC--CCceEecC
Q 009708 415 PCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRH--PEFSIDPA 492 (528)
Q Consensus 415 Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~l~~~--~~~~~~~~ 492 (528)
. .++ ..+++.+.++|+|||++++.. ....+..+....++. .++++++.
T Consensus 118 -~------------------~~~-------~~~~~~~~~~LkpgG~lvi~~----~~~~~~~~~~~~e~~~~~~~~~~~~ 167 (181)
T TIGR00138 118 -L------------------ASL-------NVLLELTLNLLKVGGYFLAYK----GKKYLDEIEEAKRKCQVLGVEPLEV 167 (181)
T ss_pred -h------------------hCH-------HHHHHHHHHhcCCCCEEEEEc----CCCcHHHHHHHHHhhhhcCceEeec
Confidence 1 011 235777899999999999652 333344454555542 35665554
Q ss_pred C
Q 009708 493 D 493 (528)
Q Consensus 493 ~ 493 (528)
+
T Consensus 168 ~ 168 (181)
T TIGR00138 168 P 168 (181)
T ss_pred c
Confidence 3
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.7e-11 Score=120.02 Aligned_cols=117 Identities=19% Similarity=0.277 Sum_probs=93.0
Q ss_pred HHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCC
Q 009708 325 GLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 404 (528)
Q Consensus 325 ~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~ 404 (528)
..+...+.+++|.+|||+|||+|..+..+++..++.++|+++|+++.+++.++++++..++++ ++++++|+..++. ..
T Consensus 35 ~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~-~~ 112 (231)
T TIGR02752 35 KDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHN-VELVHGNAMELPF-DD 112 (231)
T ss_pred HHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCc-eEEEEechhcCCC-CC
Confidence 344556778889999999999999999999887667899999999999999999999888864 8999999987642 24
Q ss_pred CCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 405 ~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
++||.|+++-.. ...++ ..++|+++.++|+|||+++..+
T Consensus 113 ~~fD~V~~~~~l------~~~~~----------------~~~~l~~~~~~Lk~gG~l~~~~ 151 (231)
T TIGR02752 113 NSFDYVTIGFGL------RNVPD----------------YMQVLREMYRVVKPGGKVVCLE 151 (231)
T ss_pred CCccEEEEeccc------ccCCC----------------HHHHHHHHHHHcCcCeEEEEEE
Confidence 689999975322 11111 1346899999999999998654
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.2e-12 Score=119.74 Aligned_cols=139 Identities=19% Similarity=0.187 Sum_probs=100.0
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc--CCCCCCEEEE
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN--STVKCDKVLL 412 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~--~~~~fD~Vl~ 412 (528)
.+.+|||+|||+|..+..+|... +...++|+|+++.+++.++++++..++.+ ++++++|+..+... ..+.+|.|++
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~-p~~~v~gvD~~~~~l~~a~~~~~~~~l~n-i~~i~~d~~~~~~~~~~~~~~d~v~~ 93 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQN-PDKNFLGIEIHTPIVLAANNKANKLGLKN-LHVLCGDANELLDKFFPDGSLSKVFL 93 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHhCCCC-EEEEccCHHHHHHhhCCCCceeEEEE
Confidence 45689999999999999999874 56799999999999999999999999985 99999999876432 1357999999
Q ss_pred cCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHHHhhCCCceEecC
Q 009708 413 DAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPA 492 (528)
Q Consensus 413 D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~l~~~~~~~~~~~ 492 (528)
+.|.- +.+....+.+ -.+..+++.+.++|||||.|+++|- ....-+.+...+..++.|+....
T Consensus 94 ~~pdp----w~k~~h~~~r----------~~~~~~l~~~~r~LkpgG~l~~~td---~~~~~~~~~~~~~~~~~f~~~~~ 156 (194)
T TIGR00091 94 NFPDP----WPKKRHNKRR----------ITQPHFLKEYANVLKKGGVIHFKTD---NEPLFEDMLKVLSENDLFENTSK 156 (194)
T ss_pred ECCCc----CCCCCccccc----------cCCHHHHHHHHHHhCCCCEEEEEeC---CHHHHHHHHHHHHhCCCeEeccc
Confidence 87631 0000000000 1135679999999999999987662 22222233455666777776543
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1e-11 Score=123.25 Aligned_cols=140 Identities=19% Similarity=0.323 Sum_probs=107.5
Q ss_pred hHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc
Q 009708 323 SAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 402 (528)
Q Consensus 323 ~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~ 402 (528)
.-.++...+.++||++|||+|||.|+.++++|+.. +.+|+|+++|++..+.+++.++..|++.++++...|..++.
T Consensus 60 k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y--~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~-- 135 (283)
T COG2230 60 KLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY--GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE-- 135 (283)
T ss_pred HHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHc--CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc--
Confidence 34566777899999999999999999999999985 57999999999999999999999999977999999998876
Q ss_pred CCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHHHh
Q 009708 403 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLL 482 (528)
Q Consensus 403 ~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~l~ 482 (528)
++||.|++ .|++-+- . .+.+..+++.+.++|+|||.++..+-+....+.. ....|+.
T Consensus 136 --e~fDrIvS------vgmfEhv-------g-------~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~-~~~~~i~ 192 (283)
T COG2230 136 --EPFDRIVS------VGMFEHV-------G-------KENYDDFFKKVYALLKPGGRMLLHSITGPDQEFR-RFPDFID 192 (283)
T ss_pred --cccceeee------hhhHHHh-------C-------cccHHHHHHHHHhhcCCCceEEEEEecCCCcccc-cchHHHH
Confidence 34999985 2332110 0 1224567999999999999999876654443222 3445666
Q ss_pred hC--CCceE
Q 009708 483 RH--PEFSI 489 (528)
Q Consensus 483 ~~--~~~~~ 489 (528)
++ |+..+
T Consensus 193 ~yiFPgG~l 201 (283)
T COG2230 193 KYIFPGGEL 201 (283)
T ss_pred HhCCCCCcC
Confidence 65 55443
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.34 E-value=1e-11 Score=124.23 Aligned_cols=120 Identities=17% Similarity=0.292 Sum_probs=90.4
Q ss_pred HHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHH---cCCCccEEEEcCcccccccc
Q 009708 326 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKL---HQVNSVIRTIHADLRTFADN 402 (528)
Q Consensus 326 l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~---~g~~~~i~~~~~D~~~~~~~ 402 (528)
++...+.+.++++|||+|||+|..+..+++.+++.++|+|+|+|+.+++.++++... .+.+ +++++++|+.+++.
T Consensus 64 ~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~-~i~~~~~d~~~lp~- 141 (261)
T PLN02233 64 MAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYK-NIEWIEGDATDLPF- 141 (261)
T ss_pred HHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCC-CeEEEEcccccCCC-
Confidence 344566778899999999999999999998766567999999999999999887642 2233 48999999988653
Q ss_pred CCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCC
Q 009708 403 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSID 469 (528)
Q Consensus 403 ~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~ 469 (528)
..++||.|++.- + +..-+ + ...+|.++.++|||||+++..+.+-.
T Consensus 142 ~~~sfD~V~~~~-----~-l~~~~---------d-------~~~~l~ei~rvLkpGG~l~i~d~~~~ 186 (261)
T PLN02233 142 DDCYFDAITMGY-----G-LRNVV---------D-------RLKAMQEMYRVLKPGSRVSILDFNKS 186 (261)
T ss_pred CCCCEeEEEEec-----c-cccCC---------C-------HHHHHHHHHHHcCcCcEEEEEECCCC
Confidence 246899998631 1 11111 1 23469999999999999998876543
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.9e-12 Score=122.49 Aligned_cols=119 Identities=15% Similarity=0.228 Sum_probs=91.3
Q ss_pred ceeEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcC
Q 009708 315 GLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA 394 (528)
Q Consensus 315 G~~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~ 394 (528)
|....|......+.++++++||++|||+|||+|..|..++.+.+..++|+++|+++..++.+++|++.++..| ++++++
T Consensus 52 ~~~is~P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~n-v~~~~g 130 (209)
T PF01135_consen 52 GQTISAPSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDN-VEVVVG 130 (209)
T ss_dssp TEEE--HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHS-EEEEES
T ss_pred eeechHHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCc-eeEEEc
Confidence 4444444445567778899999999999999999999999998888899999999999999999999999986 899999
Q ss_pred ccccccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEE
Q 009708 395 DLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463 (528)
Q Consensus 395 D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvy 463 (528)
|...-.+. ...||+|++.+.+.. +-....+.|++||+||.
T Consensus 131 dg~~g~~~-~apfD~I~v~~a~~~----------------------------ip~~l~~qL~~gGrLV~ 170 (209)
T PF01135_consen 131 DGSEGWPE-EAPFDRIIVTAAVPE----------------------------IPEALLEQLKPGGRLVA 170 (209)
T ss_dssp -GGGTTGG-G-SEEEEEESSBBSS------------------------------HHHHHTEEEEEEEEE
T ss_pred chhhcccc-CCCcCEEEEeeccch----------------------------HHHHHHHhcCCCcEEEE
Confidence 98764433 357999999876621 12335677999999994
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.33 E-value=9.1e-12 Score=118.12 Aligned_cols=119 Identities=16% Similarity=0.208 Sum_probs=98.2
Q ss_pred cceeEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEc
Q 009708 314 EGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH 393 (528)
Q Consensus 314 ~G~~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~ 393 (528)
.|.++-|-.....+.++|.+++|++||++|||+|..+..||+. .++|+++|+.+...+.|++|++.+|+.| |.+++
T Consensus 51 ~gqtis~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l---~~~V~siEr~~~L~~~A~~~L~~lg~~n-V~v~~ 126 (209)
T COG2518 51 CGQTISAPHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARL---VGRVVSIERIEELAEQARRNLETLGYEN-VTVRH 126 (209)
T ss_pred CCceecCcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHH---hCeEEEEEEcHHHHHHHHHHHHHcCCCc-eEEEE
Confidence 6777777666778888999999999999999999999999998 3599999999999999999999999998 99999
Q ss_pred CccccccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 394 ADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 394 ~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
+|...-.+. ...||+|++.+-+.. +=+...+.||+||+||.-.
T Consensus 127 gDG~~G~~~-~aPyD~I~Vtaaa~~----------------------------vP~~Ll~QL~~gGrlv~Pv 169 (209)
T COG2518 127 GDGSKGWPE-EAPYDRIIVTAAAPE----------------------------VPEALLDQLKPGGRLVIPV 169 (209)
T ss_pred CCcccCCCC-CCCcCEEEEeeccCC----------------------------CCHHHHHhcccCCEEEEEE
Confidence 999774432 368999998755511 1233456799999999643
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.7e-11 Score=128.70 Aligned_cols=85 Identities=20% Similarity=0.248 Sum_probs=71.2
Q ss_pred hcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCE
Q 009708 330 VVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDK 409 (528)
Q Consensus 330 ~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~ 409 (528)
++...++.+|||+|||+|..++.++.. ..+|+|+|+++.+++.+++|++.+++++ ++++++|+.++......+||+
T Consensus 228 ~l~~~~~~~vLDL~cG~G~~~l~la~~---~~~v~~vE~~~~av~~a~~N~~~~~~~~-~~~~~~d~~~~~~~~~~~~D~ 303 (374)
T TIGR02085 228 WVREIPVTQMWDLFCGVGGFGLHCAGP---DTQLTGIEIESEAIACAQQSAQMLGLDN-LSFAALDSAKFATAQMSAPEL 303 (374)
T ss_pred HHHhcCCCEEEEccCCccHHHHHHhhc---CCeEEEEECCHHHHHHHHHHHHHcCCCc-EEEEECCHHHHHHhcCCCCCE
Confidence 333345679999999999999999864 4689999999999999999999999974 999999998765322246999
Q ss_pred EEEcCCCCC
Q 009708 410 VLLDAPCSG 418 (528)
Q Consensus 410 Vl~D~Pcsg 418 (528)
|++|||..|
T Consensus 304 vi~DPPr~G 312 (374)
T TIGR02085 304 VLVNPPRRG 312 (374)
T ss_pred EEECCCCCC
Confidence 999999864
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.6e-12 Score=120.74 Aligned_cols=116 Identities=16% Similarity=0.238 Sum_probs=87.9
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcc-ccccc-cCCCCCCEEEE
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL-RTFAD-NSTVKCDKVLL 412 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~-~~~~~-~~~~~fD~Vl~ 412 (528)
++.+|||+|||+|..+..+++.. +..+|+|+|+|+.+++.++++++..++.+ +.++++|+ ..+.. ...+.||.|++
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~~~~~~-v~~~~~d~~~~l~~~~~~~~~D~V~~ 117 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEEEGLTN-LRLLCGDAVEVLLDMFPDGSLDRIYL 117 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHHcCCCC-EEEEecCHHHHHHHHcCccccceEEE
Confidence 56799999999999999999875 45789999999999999999999998865 89999999 55432 22467999998
Q ss_pred cCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcC
Q 009708 413 DAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466 (528)
Q Consensus 413 D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTc 466 (528)
+.|.. |......... ..+..+++.+.++|||||+++++++
T Consensus 118 ~~~~p------------~~~~~~~~~~--~~~~~~l~~i~~~LkpgG~l~i~~~ 157 (202)
T PRK00121 118 NFPDP------------WPKKRHHKRR--LVQPEFLALYARKLKPGGEIHFATD 157 (202)
T ss_pred ECCCC------------CCCccccccc--cCCHHHHHHHHHHcCCCCEEEEEcC
Confidence 75431 1000000000 1245679999999999999998765
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.7e-11 Score=116.50 Aligned_cols=124 Identities=23% Similarity=0.285 Sum_probs=105.0
Q ss_pred cchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEc-Cccccc
Q 009708 321 DESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH-ADLRTF 399 (528)
Q Consensus 321 d~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~-~D~~~~ 399 (528)
.+...++..++...+..+||++|++.|.-+++||..++..++++++|+++++.+.|++|+++.|+.++|+++. +|+.+.
T Consensus 45 ~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~ 124 (219)
T COG4122 45 PETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDV 124 (219)
T ss_pred hhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHH
Confidence 5556677777777778899999999999999999999878899999999999999999999999999888888 588876
Q ss_pred ccc-CCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCC
Q 009708 400 ADN-STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSID 469 (528)
Q Consensus 400 ~~~-~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~ 469 (528)
... ..++||.||+|+--+ .|..+++.+.++|+|||.+|.-...+.
T Consensus 125 l~~~~~~~fDliFIDadK~-------------------------~yp~~le~~~~lLr~GGliv~DNvl~~ 170 (219)
T COG4122 125 LSRLLDGSFDLVFIDADKA-------------------------DYPEYLERALPLLRPGGLIVADNVLFG 170 (219)
T ss_pred HHhccCCCccEEEEeCChh-------------------------hCHHHHHHHHHHhCCCcEEEEeecccC
Confidence 653 357899999996652 245579999999999999987666554
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.3e-11 Score=117.71 Aligned_cols=119 Identities=17% Similarity=0.193 Sum_probs=92.7
Q ss_pred ceeEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcC
Q 009708 315 GLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA 394 (528)
Q Consensus 315 G~~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~ 394 (528)
|.++.+......+...+.++++.+|||+|||+|..+..++... ++|+++|+++.+++.++++++++++.+ ++++++
T Consensus 58 ~~~~~~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~~~-v~~~~~ 133 (212)
T PRK00312 58 GQTISQPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGLHN-VSVRHG 133 (212)
T ss_pred CCeeCcHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCCCc-eEEEEC
Confidence 3344444444566677888899999999999999999888762 589999999999999999999999986 899999
Q ss_pred ccccccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcC
Q 009708 395 DLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466 (528)
Q Consensus 395 D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTc 466 (528)
|+...... .++||+|+++.++.. +.....+.|+|||+|+....
T Consensus 134 d~~~~~~~-~~~fD~I~~~~~~~~----------------------------~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 134 DGWKGWPA-YAPFDRILVTAAAPE----------------------------IPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred CcccCCCc-CCCcCEEEEccCchh----------------------------hhHHHHHhcCCCcEEEEEEc
Confidence 98653221 367999999876521 13345678999999997653
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.2e-11 Score=128.88 Aligned_cols=150 Identities=22% Similarity=0.344 Sum_probs=92.2
Q ss_pred HHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---
Q 009708 326 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN--- 402 (528)
Q Consensus 326 l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~--- 402 (528)
.+..+++..++ .|||++||.|.+|+.+|.. ..+|+|||+++.+++.|++|++.+|++| ++++++++.++...
T Consensus 188 ~~~~~l~~~~~-~vlDlycG~G~fsl~la~~---~~~V~gvE~~~~av~~A~~Na~~N~i~n-~~f~~~~~~~~~~~~~~ 262 (352)
T PF05958_consen 188 QALEWLDLSKG-DVLDLYCGVGTFSLPLAKK---AKKVIGVEIVEEAVEDARENAKLNGIDN-VEFIRGDAEDFAKALAK 262 (352)
T ss_dssp HHHHHCTT-TT-EEEEES-TTTCCHHHHHCC---SSEEEEEES-HHHHHHHHHHHHHTT--S-EEEEE--SHHCCCHHCC
T ss_pred HHHHHhhcCCC-cEEEEeecCCHHHHHHHhh---CCeEEEeeCCHHHHHHHHHHHHHcCCCc-ceEEEeeccchhHHHHh
Confidence 34566776666 8999999999999999975 5799999999999999999999999997 99998876554221
Q ss_pred ------------CCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCc
Q 009708 403 ------------STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDP 470 (528)
Q Consensus 403 ------------~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~ 470 (528)
....+|.|++|||-+|.+- . +++.+.+ + .++||.+|....
T Consensus 263 ~r~~~~~~~~~~~~~~~d~vilDPPR~G~~~--------------~----------~~~~~~~-~---~~ivYvSCnP~t 314 (352)
T PF05958_consen 263 AREFNRLKGIDLKSFKFDAVILDPPRAGLDE--------------K----------VIELIKK-L---KRIVYVSCNPAT 314 (352)
T ss_dssp S-GGTTGGGS-GGCTTESEEEE---TT-SCH--------------H----------HHHHHHH-S---SEEEEEES-HHH
T ss_pred hHHHHhhhhhhhhhcCCCEEEEcCCCCCchH--------------H----------HHHHHhc-C---CeEEEEECCHHH
Confidence 0236899999999988553 1 1222222 2 489999996432
Q ss_pred hhhHHHHHHHHhhCCCceEecCCCCCCCccccCCceEEEcCCCCCCCceEEEEEEec
Q 009708 471 EENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLVRA 527 (528)
Q Consensus 471 ~Ene~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~~~dGff~a~l~k~ 527 (528)
-- .-+. .|.+ ++++..+. -+-.+|+.+..+- +++|+|+
T Consensus 315 la--RDl~-~L~~--~y~~~~v~------------~~DmFP~T~HvE~--v~lL~rk 352 (352)
T PF05958_consen 315 LA--RDLK-ILKE--GYKLEKVQ------------PVDMFPQTHHVET--VALLERK 352 (352)
T ss_dssp HH--HHHH-HHHC--CEEEEEEE------------EE-SSTTSS--EE--EEEEEE-
T ss_pred HH--HHHH-HHhh--cCEEEEEE------------EeecCCCCCcEEE--EEEEEeC
Confidence 21 1122 2332 57665542 1345788777776 7778774
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.1e-11 Score=110.99 Aligned_cols=119 Identities=27% Similarity=0.322 Sum_probs=93.8
Q ss_pred CCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEE
Q 009708 332 DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVL 411 (528)
Q Consensus 332 ~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl 411 (528)
..-.|..|+|+|||+|..++.++.+ +..+|+|+|+++++++.+++|+++++ ..+.++++|+..+. .+||.|+
T Consensus 42 g~l~g~~V~DlG~GTG~La~ga~~l--Ga~~V~~vdiD~~a~ei~r~N~~~l~--g~v~f~~~dv~~~~----~~~dtvi 113 (198)
T COG2263 42 GDLEGKTVLDLGAGTGILAIGAALL--GASRVLAVDIDPEALEIARANAEELL--GDVEFVVADVSDFR----GKFDTVI 113 (198)
T ss_pred CCcCCCEEEEcCCCcCHHHHHHHhc--CCcEEEEEecCHHHHHHHHHHHHhhC--CceEEEEcchhhcC----CccceEE
Confidence 3446778999999999999988765 45799999999999999999999944 34999999998875 5799999
Q ss_pred EcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHHHhhCC
Q 009708 412 LDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHP 485 (528)
Q Consensus 412 ~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~l~~~~ 485 (528)
.|||. |..++++|. .+|..|++.- ..||| +|..-+.+-+..+...+.
T Consensus 114 mNPPF---G~~~rhaDr-----------------~Fl~~Ale~s----~vVYs---iH~a~~~~f~~~~~~~~G 160 (198)
T COG2263 114 MNPPF---GSQRRHADR-----------------PFLLKALEIS----DVVYS---IHKAGSRDFVEKFAADLG 160 (198)
T ss_pred ECCCC---ccccccCCH-----------------HHHHHHHHhh----heEEE---eeccccHHHHHHHHHhcC
Confidence 99998 556777763 3567777664 47774 666666667777777664
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.9e-11 Score=117.01 Aligned_cols=80 Identities=15% Similarity=0.213 Sum_probs=68.1
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEc
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLD 413 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D 413 (528)
.++.+|||+|||+|..++.++.+ ...+|+++|+++..++.+++|++.+|+.+ ++++++|+..........||+|++|
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr--~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~-v~~~~~D~~~~l~~~~~~fDlV~~D 128 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSR--YAAGATLLEMDRAVAQQLIKNLATLKAGN-ARVVNTNALSFLAQPGTPHNVVFVD 128 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHHHHhCCCc-EEEEEchHHHHHhhcCCCceEEEEC
Confidence 46789999999999999976554 24699999999999999999999999875 8999999987543223469999999
Q ss_pred CCC
Q 009708 414 APC 416 (528)
Q Consensus 414 ~Pc 416 (528)
||+
T Consensus 129 PPy 131 (199)
T PRK10909 129 PPF 131 (199)
T ss_pred CCC
Confidence 997
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.4e-11 Score=132.43 Aligned_cols=88 Identities=27% Similarity=0.378 Sum_probs=74.6
Q ss_pred HHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---C
Q 009708 327 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---S 403 (528)
Q Consensus 327 ~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---~ 403 (528)
+...+.+.+|++|||+|||+|..++.++.. ..+|+|+|+|+.+++.+++|++.+|+++ ++++++|+.+.... .
T Consensus 289 vl~~l~~~~~~~VLDlgcGtG~~sl~la~~---~~~V~gvD~s~~al~~A~~n~~~~~~~~-v~~~~~d~~~~l~~~~~~ 364 (443)
T PRK13168 289 ALEWLDPQPGDRVLDLFCGLGNFTLPLARQ---AAEVVGVEGVEAMVERARENARRNGLDN-VTFYHANLEEDFTDQPWA 364 (443)
T ss_pred HHHHhcCCCCCEEEEEeccCCHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEEeChHHhhhhhhhh
Confidence 344556778899999999999999999986 3689999999999999999999999976 99999999764321 1
Q ss_pred CCCCCEEEEcCCCCC
Q 009708 404 TVKCDKVLLDAPCSG 418 (528)
Q Consensus 404 ~~~fD~Vl~D~Pcsg 418 (528)
..+||+|++|||+.|
T Consensus 365 ~~~fD~Vi~dPPr~g 379 (443)
T PRK13168 365 LGGFDKVLLDPPRAG 379 (443)
T ss_pred cCCCCEEEECcCCcC
Confidence 357999999999975
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.4e-11 Score=118.44 Aligned_cols=141 Identities=21% Similarity=0.316 Sum_probs=104.5
Q ss_pred HHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC-
Q 009708 325 GLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS- 403 (528)
Q Consensus 325 ~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~- 403 (528)
+++..++......+||++|++.|.-|+++|+.+++.++|+++|+++.+.+.+++++++.|+.++|+++.+|+.+..+..
T Consensus 35 ~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~ 114 (205)
T PF01596_consen 35 QLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELA 114 (205)
T ss_dssp HHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHH
T ss_pred HHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHH
Confidence 3333333333455999999999999999999888889999999999999999999999999989999999998764421
Q ss_pred ----CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCc------hhh
Q 009708 404 ----TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDP------EEN 473 (528)
Q Consensus 404 ----~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~------~En 473 (528)
.++||.||+|+.-. .|...++.+.++|+|||.||.-.+-+.. .++
T Consensus 115 ~~~~~~~fD~VFiDa~K~-------------------------~y~~y~~~~~~ll~~ggvii~DN~l~~G~V~~~~~~~ 169 (205)
T PF01596_consen 115 NDGEEGQFDFVFIDADKR-------------------------NYLEYFEKALPLLRPGGVIIADNVLWRGSVADPDDED 169 (205)
T ss_dssp HTTTTTSEEEEEEESTGG-------------------------GHHHHHHHHHHHEEEEEEEEEETTTGGGGGGSTTGGS
T ss_pred hccCCCceeEEEEccccc-------------------------chhhHHHHHhhhccCCeEEEEccccccceecCccchh
Confidence 25799999998752 1344577888999999999977665331 112
Q ss_pred HH-----HHHHHHhhCCCceEe
Q 009708 474 EE-----RVEAFLLRHPEFSID 490 (528)
Q Consensus 474 e~-----~v~~~l~~~~~~~~~ 490 (528)
.. ....++..+|+|+..
T Consensus 170 ~~~~~ir~f~~~i~~d~~~~~~ 191 (205)
T PF01596_consen 170 PKTVAIREFNEYIANDPRFETV 191 (205)
T ss_dssp HHHHHHHHHHHHHHH-TTEEEE
T ss_pred hhHHHHHHHHHHHHhCCCeeEE
Confidence 22 233456667877654
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.2e-11 Score=128.21 Aligned_cols=109 Identities=18% Similarity=0.174 Sum_probs=87.9
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEc
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLD 413 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D 413 (528)
.++.+|||+|||+|+.+..+++.. +.+|+|+|+|+.+++.++++++..|+.++++++++|+.+++. ..+.||+|++.
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~-~~~~FD~V~s~ 193 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPF-EDGQFDLVWSM 193 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCC-CCCCccEEEEC
Confidence 678899999999999999999864 469999999999999999999999987679999999987643 24689999963
Q ss_pred CCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 414 APCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 414 ~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
- .+.+-++ ...+++++.++|||||+|+++++.
T Consensus 194 ~------~~~h~~d----------------~~~~l~e~~rvLkpGG~lvi~~~~ 225 (340)
T PLN02244 194 E------SGEHMPD----------------KRKFVQELARVAAPGGRIIIVTWC 225 (340)
T ss_pred C------chhccCC----------------HHHHHHHHHHHcCCCcEEEEEEec
Confidence 1 1111111 234689999999999999987754
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.9e-11 Score=121.73 Aligned_cols=109 Identities=17% Similarity=0.270 Sum_probs=86.6
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEc
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLD 413 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D 413 (528)
.++.+|||+|||+|..+..+++. +.+|+++|+|+.+++.++++++..|+.++++++++|+.++.....++||+|++.
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~---g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~ 119 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL---GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFH 119 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEeh
Confidence 45679999999999999999985 468999999999999999999999987678999999987654345789999974
Q ss_pred CCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 414 APCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 414 ~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
.... | ......++..+.++|||||+|+.....
T Consensus 120 ~vl~------------~----------~~~~~~~l~~~~~~LkpgG~l~i~~~n 151 (255)
T PRK11036 120 AVLE------------W----------VADPKSVLQTLWSVLRPGGALSLMFYN 151 (255)
T ss_pred hHHH------------h----------hCCHHHHHHHHHHHcCCCeEEEEEEEC
Confidence 3220 1 011235689999999999999865444
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.6e-11 Score=112.81 Aligned_cols=110 Identities=27% Similarity=0.326 Sum_probs=74.5
Q ss_pred CeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCC--CCCCEEEEcC
Q 009708 337 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST--VKCDKVLLDA 414 (528)
Q Consensus 337 ~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~--~~fD~Vl~D~ 414 (528)
+.|+|+|||.||-++++|.. ..+|+|+|+++.+++.++.|++-+|+.++|+++++|+.+...... ..||.|+++|
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~---~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP 77 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFART---FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP 77 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHT---T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred CEEEEeccCcCHHHHHHHHh---CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence 37999999999999999986 458999999999999999999999998889999999998765431 2289999999
Q ss_pred CCCCCccccCC-chhhccCCHHHHHHHHHHHHHHHHHHhccCc
Q 009708 415 PCSGLGVLSKR-ADLRWNRRLEDMEELKILQDELLDAASLLVK 456 (528)
Q Consensus 415 Pcsg~G~~~~~-pd~~~~~~~~~~~~l~~~q~~lL~~a~~~Lk 456 (528)
|+.|....... -|+.....+-.+.++ ++.+.++-+
T Consensus 78 PWGGp~Y~~~~~fdL~~~~~p~~~~~l-------~~~~~~~t~ 113 (163)
T PF09445_consen 78 PWGGPSYSKKDVFDLEKSMQPFNLEDL-------LKAARKITP 113 (163)
T ss_dssp -BSSGGGGGSSSB-TTTSSSS--HHHH-------HHHHHHH-S
T ss_pred CCCCccccccCccCHHHccCCCCHHHH-------HHHHHhhCC
Confidence 99987775542 233223344445444 555555543
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.5e-12 Score=119.42 Aligned_cols=102 Identities=36% Similarity=0.571 Sum_probs=79.0
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEE
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 412 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~ 412 (528)
..+|+.|+|++||-|.+++.+|.. .....|+|+|++|..++.+++|++.+++++++.++++|+..+.. ...||.|++
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~-~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~--~~~~drvim 175 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKH-GKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP--EGKFDRVIM 175 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHH-T-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG-----TT-EEEEEE
T ss_pred CCcceEEEEccCCccHHHHHHhhh-cCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC--ccccCEEEE
Confidence 568999999999999999999985 34678999999999999999999999999999999999999876 478999999
Q ss_pred cCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEE
Q 009708 413 DAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463 (528)
Q Consensus 413 D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvy 463 (528)
+.|-++. ++|..+..++++||++.|
T Consensus 176 ~lp~~~~--------------------------~fl~~~~~~~~~~g~ihy 200 (200)
T PF02475_consen 176 NLPESSL--------------------------EFLDAALSLLKEGGIIHY 200 (200)
T ss_dssp --TSSGG--------------------------GGHHHHHHHEEEEEEEEE
T ss_pred CChHHHH--------------------------HHHHHHHHHhcCCcEEEC
Confidence 9997542 248889999999999876
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.7e-11 Score=114.73 Aligned_cols=148 Identities=18% Similarity=0.166 Sum_probs=106.8
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccc----ccccCCCCCCEE
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT----FADNSTVKCDKV 410 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~----~~~~~~~~fD~V 410 (528)
.+..|||+|||+|..++.++..++ .++|+|+|.|+.++..+.+|++++++.+++.+++.++.. -.+...++.|++
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dll 226 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGLP-QCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLL 226 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcCC-CceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEE
Confidence 356899999999999999999887 789999999999999999999999999999988665433 221124789999
Q ss_pred EEcCCCCCCcccc-CCchhhccCCHHHH---HHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHHHhhCC
Q 009708 411 LLDAPCSGLGVLS-KRADLRWNRRLEDM---EELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHP 485 (528)
Q Consensus 411 l~D~Pcsg~G~~~-~~pd~~~~~~~~~~---~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~l~~~~ 485 (528)
++|||+-..--+. -+|+++-......+ .+.......++.-|.++|+|||.+++.+--. .+....|..++...+
T Consensus 227 vsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~--~~~~~lv~~~m~s~~ 303 (328)
T KOG2904|consen 227 VSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVER--KEHSYLVRIWMISLK 303 (328)
T ss_pred ecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEeccc--ccCcHHHHHHHHhch
Confidence 9999994322111 24555433222221 1344555677889999999999999876522 334456666766543
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.9e-11 Score=121.01 Aligned_cols=107 Identities=23% Similarity=0.286 Sum_probs=80.2
Q ss_pred cCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccc--cCCCCCC
Q 009708 331 VDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD--NSTVKCD 408 (528)
Q Consensus 331 l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~--~~~~~fD 408 (528)
+.+++|++|||+|||||.++.+++..+.+.+.|+|||+++.+++.+.+.++.. +| |.++..|+..... .....||
T Consensus 128 l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r--~N-I~~I~~Da~~p~~y~~~~~~vD 204 (293)
T PTZ00146 128 IPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR--PN-IVPIIEDARYPQKYRMLVPMVD 204 (293)
T ss_pred eccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CC-CEEEECCccChhhhhcccCCCC
Confidence 45789999999999999999999999887889999999988776665554432 33 7788899865211 1135799
Q ss_pred EEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 409 KVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 409 ~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
+|++|... |+ ....++.++.++|||||+|+++
T Consensus 205 vV~~Dva~---------pd---------------q~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 205 VIFADVAQ---------PD---------------QARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred EEEEeCCC---------cc---------------hHHHHHHHHHHhccCCCEEEEE
Confidence 99999742 11 1122456789999999999973
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.5e-11 Score=115.53 Aligned_cols=109 Identities=28% Similarity=0.390 Sum_probs=78.3
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccc-------ccCCC
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA-------DNSTV 405 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~-------~~~~~ 405 (528)
..+|.+|||+|||||..+..+++..++.++|+|+|+++. .+..+ ++++++|+.+.. .....
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~~~~~-v~~i~~D~~~~~~~~~i~~~~~~~ 116 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----------DPIVG-VDFLQGDFRDELVLKALLERVGDS 116 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----------cCCCC-cEEEecCCCChHHHHHHHHHhCCC
Confidence 356889999999999999999998776789999999981 23444 889999998742 11246
Q ss_pred CCCEEEEcC-CCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 406 KCDKVLLDA-PCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 406 ~fD~Vl~D~-Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
.||.|++|+ |.. .|. |. .+......+...+|+.+.++|||||.++..+
T Consensus 117 ~~D~V~S~~~~~~-~g~----~~-------~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~ 165 (209)
T PRK11188 117 KVQVVMSDMAPNM-SGT----PA-------VDIPRAMYLVELALDMCRDVLAPGGSFVVKV 165 (209)
T ss_pred CCCEEecCCCCcc-CCC----hH-------HHHHHHHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 899999986 331 121 10 1112222234578999999999999999643
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.29 E-value=4e-11 Score=121.60 Aligned_cols=135 Identities=21% Similarity=0.240 Sum_probs=96.7
Q ss_pred chHHHHHHhcC--CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccc
Q 009708 322 ESAGLVVAVVD--PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 399 (528)
Q Consensus 322 ~~s~l~~~~l~--~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~ 399 (528)
++..++..++. ..+|.+|||+|||+|..++.++.. +..+|+|+|+++.+++.+++|+..+++.+.+.+...|....
T Consensus 144 ~tt~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~--g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~ 221 (288)
T TIGR00406 144 PTTSLCLEWLEDLDLKDKNVIDVGCGSGILSIAALKL--GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP 221 (288)
T ss_pred HHHHHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc
Confidence 34444444433 457889999999999999888764 35699999999999999999999999887677777664332
Q ss_pred cccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHH
Q 009708 400 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEA 479 (528)
Q Consensus 400 ~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~ 479 (528)
. .++||+|++|... .. ...++..+.++|||||+|++|... . +..+.+..
T Consensus 222 ~---~~~fDlVvan~~~------------------~~-------l~~ll~~~~~~LkpgG~li~sgi~--~-~~~~~v~~ 270 (288)
T TIGR00406 222 I---EGKADVIVANILA------------------EV-------IKELYPQFSRLVKPGGWLILSGIL--E-TQAQSVCD 270 (288)
T ss_pred c---CCCceEEEEecCH------------------HH-------HHHHHHHHHHHcCCCcEEEEEeCc--H-hHHHHHHH
Confidence 2 3689999987432 11 235688999999999999987642 2 33334555
Q ss_pred HHhhCCCceEec
Q 009708 480 FLLRHPEFSIDP 491 (528)
Q Consensus 480 ~l~~~~~~~~~~ 491 (528)
.++++ |++..
T Consensus 271 ~~~~~--f~~~~ 280 (288)
T TIGR00406 271 AYEQG--FTVVE 280 (288)
T ss_pred HHHcc--Cceee
Confidence 55654 65543
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.8e-11 Score=114.31 Aligned_cols=115 Identities=19% Similarity=0.152 Sum_probs=87.8
Q ss_pred HHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC
Q 009708 324 AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS 403 (528)
Q Consensus 324 s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~ 403 (528)
...+...+...++.+|||+|||+|..+..+++. +.+|+|+|+|+.+++.++++++..++.+ +++++.|+..+..
T Consensus 19 ~~~l~~~l~~~~~~~vLDiGcG~G~~a~~La~~---g~~V~gvD~S~~~i~~a~~~~~~~~~~~-v~~~~~d~~~~~~-- 92 (197)
T PRK11207 19 HSEVLEAVKVVKPGKTLDLGCGNGRNSLYLAAN---GFDVTAWDKNPMSIANLERIKAAENLDN-LHTAVVDLNNLTF-- 92 (197)
T ss_pred hHHHHHhcccCCCCcEEEECCCCCHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHHcCCCc-ceEEecChhhCCc--
Confidence 334555666667789999999999999999975 4699999999999999999999988875 8888899876543
Q ss_pred CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 404 ~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
...||.|++.... .. ..+.+ ...+++.+.++|||||++++.
T Consensus 93 ~~~fD~I~~~~~~------~~-------~~~~~-------~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 93 DGEYDFILSTVVL------MF-------LEAKT-------IPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred CCCcCEEEEecch------hh-------CCHHH-------HHHHHHHHHHHcCCCcEEEEE
Confidence 3579999964221 10 11122 245699999999999996543
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.8e-11 Score=129.82 Aligned_cols=91 Identities=20% Similarity=0.270 Sum_probs=80.5
Q ss_pred HHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC--
Q 009708 326 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS-- 403 (528)
Q Consensus 326 l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~-- 403 (528)
.+.++++..++++|||+.||.|++|+.+|.. ..+|+|+|+++.+++.|++|++.+|++| ++++.+|+..+....
T Consensus 284 ~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~---~~~V~gvEi~~~aV~~A~~NA~~n~i~N-~~f~~~~ae~~~~~~~~ 359 (432)
T COG2265 284 TALEWLELAGGERVLDLYCGVGTFGLPLAKR---VKKVHGVEISPEAVEAAQENAAANGIDN-VEFIAGDAEEFTPAWWE 359 (432)
T ss_pred HHHHHHhhcCCCEEEEeccCCChhhhhhccc---CCEEEEEecCHHHHHHHHHHHHHcCCCc-EEEEeCCHHHHhhhccc
Confidence 4556677788899999999999999999964 5799999999999999999999999998 999999999887654
Q ss_pred CCCCCEEEEcCCCCCCc
Q 009708 404 TVKCDKVLLDAPCSGLG 420 (528)
Q Consensus 404 ~~~fD~Vl~D~Pcsg~G 420 (528)
...||.|++|||-+|.+
T Consensus 360 ~~~~d~VvvDPPR~G~~ 376 (432)
T COG2265 360 GYKPDVVVVDPPRAGAD 376 (432)
T ss_pred cCCCCEEEECCCCCCCC
Confidence 35799999999998855
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.5e-11 Score=123.33 Aligned_cols=122 Identities=20% Similarity=0.305 Sum_probs=88.3
Q ss_pred hHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc
Q 009708 323 SAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 402 (528)
Q Consensus 323 ~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~ 402 (528)
....+.+.++++||++|||+|||.|+.+..+|+.. +.+|+|+.+|+...+.+++.+++.|+.+++++...|..++.
T Consensus 50 k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~--g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~-- 125 (273)
T PF02353_consen 50 KLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERY--GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP-- 125 (273)
T ss_dssp HHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG----
T ss_pred HHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHc--CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC--
Confidence 34467777889999999999999999999999985 47999999999999999999999999999999999998765
Q ss_pred CCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCc
Q 009708 403 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDP 470 (528)
Q Consensus 403 ~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~ 470 (528)
.+||.|++ .|++-+-. .+. ...+++.+.++|||||+++..+++...
T Consensus 126 --~~fD~IvS------i~~~Ehvg-------~~~-------~~~~f~~~~~~LkpgG~~~lq~i~~~~ 171 (273)
T PF02353_consen 126 --GKFDRIVS------IEMFEHVG-------RKN-------YPAFFRKISRLLKPGGRLVLQTITHRD 171 (273)
T ss_dssp ---S-SEEEE------ESEGGGTC-------GGG-------HHHHHHHHHHHSETTEEEEEEEEEE--
T ss_pred --CCCCEEEE------EechhhcC-------hhH-------HHHHHHHHHHhcCCCcEEEEEeccccc
Confidence 37999985 23322211 112 245699999999999999877665443
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=99.28 E-value=9.3e-12 Score=117.61 Aligned_cols=107 Identities=23% Similarity=0.338 Sum_probs=78.1
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---CCCCCCEEE
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---STVKCDKVL 411 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---~~~~fD~Vl 411 (528)
+|.+|||+|||+|..++.++++ +..+|+.||.++..+..+++|++..++.+.+++++.|+...... ...+||+|+
T Consensus 42 ~g~~vLDLFaGSGalGlEALSR--GA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIf 119 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSR--GAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIF 119 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEE
T ss_pred CCCeEEEcCCccCccHHHHHhc--CCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEE
Confidence 5889999999999999998886 56799999999999999999999999998899999998765432 257899999
Q ss_pred EcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHH--hccCcCCCEEEEEc
Q 009708 412 LDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAA--SLLVKPGGVLVYST 465 (528)
Q Consensus 412 ~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a--~~~LkpGG~LvysT 465 (528)
+|||+.. ... ..+++... ..+|+++|.+|+-+
T Consensus 120 lDPPY~~----------------~~~------~~~~l~~l~~~~~l~~~~~ii~E~ 153 (183)
T PF03602_consen 120 LDPPYAK----------------GLY------YEELLELLAENNLLNEDGLIIIEH 153 (183)
T ss_dssp E--STTS----------------CHH------HHHHHHHHHHTTSEEEEEEEEEEE
T ss_pred ECCCccc----------------chH------HHHHHHHHHHCCCCCCCEEEEEEe
Confidence 9999931 010 12234433 38999999888543
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.5e-11 Score=119.04 Aligned_cols=139 Identities=21% Similarity=0.298 Sum_probs=99.2
Q ss_pred cchHHHHHHhcC--CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccc
Q 009708 321 DESAGLVVAVVD--PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 398 (528)
Q Consensus 321 d~~s~l~~~~l~--~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~ 398 (528)
.++..++..++. .++|.+|||+|||+|..++.++.+ +..+|+|+|++|.+++.+++|+++|+++..++.-..+...
T Consensus 146 HpTT~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kL--GA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~ 223 (300)
T COG2264 146 HPTTSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKL--GAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLE 223 (300)
T ss_pred ChhHHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHc--CCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchh
Confidence 445566666654 468999999999999999998876 4678999999999999999999999998523233333322
Q ss_pred ccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHH
Q 009708 399 FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVE 478 (528)
Q Consensus 399 ~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~ 478 (528)
... .++||+|++| + ++..-..+...+..+|||||+++.|- +..+. ++.|.
T Consensus 224 ~~~--~~~~DvIVAN-----------------------I--LA~vl~~La~~~~~~lkpgg~lIlSG--Il~~q-~~~V~ 273 (300)
T COG2264 224 VPE--NGPFDVIVAN-----------------------I--LAEVLVELAPDIKRLLKPGGRLILSG--ILEDQ-AESVA 273 (300)
T ss_pred hcc--cCcccEEEeh-----------------------h--hHHHHHHHHHHHHHHcCCCceEEEEe--ehHhH-HHHHH
Confidence 222 2589999975 1 44455677899999999999999775 44444 34444
Q ss_pred HHHhhCCCceEecC
Q 009708 479 AFLLRHPEFSIDPA 492 (528)
Q Consensus 479 ~~l~~~~~~~~~~~ 492 (528)
..+.+. +|++.+.
T Consensus 274 ~a~~~~-gf~v~~~ 286 (300)
T COG2264 274 EAYEQA-GFEVVEV 286 (300)
T ss_pred HHHHhC-CCeEeEE
Confidence 444332 4666553
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.9e-11 Score=129.58 Aligned_cols=88 Identities=22% Similarity=0.284 Sum_probs=74.0
Q ss_pred HHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---C
Q 009708 327 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---S 403 (528)
Q Consensus 327 ~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---~ 403 (528)
+...+.+.++++|||+|||+|..++.+|.. ..+|+|+|+++.+++.+++|++.+|+++ ++++++|+...... .
T Consensus 284 ~~~~l~~~~~~~vLDl~cG~G~~sl~la~~---~~~V~~vE~~~~av~~a~~n~~~~~~~n-v~~~~~d~~~~l~~~~~~ 359 (431)
T TIGR00479 284 ALEALELQGEELVVDAYCGVGTFTLPLAKQ---AKSVVGIEVVPESVEKAQQNAELNGIAN-VEFLAGTLETVLPKQPWA 359 (431)
T ss_pred HHHHhccCCCCEEEEcCCCcCHHHHHHHHh---CCEEEEEEcCHHHHHHHHHHHHHhCCCc-eEEEeCCHHHHHHHHHhc
Confidence 344556677889999999999999999975 3589999999999999999999999875 99999999765322 1
Q ss_pred CCCCCEEEEcCCCCC
Q 009708 404 TVKCDKVLLDAPCSG 418 (528)
Q Consensus 404 ~~~fD~Vl~D~Pcsg 418 (528)
...||+|++|||..|
T Consensus 360 ~~~~D~vi~dPPr~G 374 (431)
T TIGR00479 360 GQIPDVLLLDPPRKG 374 (431)
T ss_pred CCCCCEEEECcCCCC
Confidence 346999999999865
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.2e-11 Score=119.00 Aligned_cols=109 Identities=27% Similarity=0.273 Sum_probs=87.8
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEc
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLD 413 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D 413 (528)
-+|.+|||+|||-|..+..||+. +..|+|+|+++..++.++..+...|+. ++..+....++... .++||+|+|-
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~---Ga~VtgiD~se~~I~~Ak~ha~e~gv~--i~y~~~~~edl~~~-~~~FDvV~cm 131 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARL---GASVTGIDASEKPIEVAKLHALESGVN--IDYRQATVEDLASA-GGQFDVVTCM 131 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHC---CCeeEEecCChHHHHHHHHhhhhcccc--ccchhhhHHHHHhc-CCCccEEEEh
Confidence 36889999999999999999986 489999999999999999999999986 66777777776643 3799999962
Q ss_pred CCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCc
Q 009708 414 APCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDP 470 (528)
Q Consensus 414 ~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~ 470 (528)
+-++++ ..-..+++.+.+++||||.++.||-.-+.
T Consensus 132 ---------------------EVlEHv-~dp~~~~~~c~~lvkP~G~lf~STinrt~ 166 (243)
T COG2227 132 ---------------------EVLEHV-PDPESFLRACAKLVKPGGILFLSTINRTL 166 (243)
T ss_pred ---------------------hHHHcc-CCHHHHHHHHHHHcCCCcEEEEeccccCH
Confidence 222222 22345899999999999999999976443
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.8e-11 Score=125.55 Aligned_cols=78 Identities=17% Similarity=0.286 Sum_probs=66.8
Q ss_pred CeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC-------------
Q 009708 337 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS------------- 403 (528)
Q Consensus 337 ~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~------------- 403 (528)
.+|||+|||+|.+++.++.. ..+|+|+|+++.+++.+++|++.+|+++ ++++++|+.++....
T Consensus 208 ~~vLDl~~G~G~~sl~la~~---~~~v~~vE~~~~ai~~a~~N~~~~~~~~-v~~~~~d~~~~l~~~~~~~~~~~~~~~~ 283 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARN---FRRVLATEISKPSVAAAQYNIAANGIDN-VQIIRMSAEEFTQAMNGVREFNRLKGID 283 (362)
T ss_pred CeEEEEeccccHHHHHHHhh---CCEEEEEECCHHHHHHHHHHHHHhCCCc-EEEEECCHHHHHHHHhhccccccccccc
Confidence 57999999999999988875 3589999999999999999999999985 999999998754321
Q ss_pred --CCCCCEEEEcCCCCC
Q 009708 404 --TVKCDKVLLDAPCSG 418 (528)
Q Consensus 404 --~~~fD~Vl~D~Pcsg 418 (528)
..+||+|++|||.+|
T Consensus 284 ~~~~~~D~v~lDPPR~G 300 (362)
T PRK05031 284 LKSYNFSTIFVDPPRAG 300 (362)
T ss_pred ccCCCCCEEEECCCCCC
Confidence 125899999999865
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.8e-11 Score=114.15 Aligned_cols=114 Identities=17% Similarity=0.136 Sum_probs=84.8
Q ss_pred HHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCC
Q 009708 325 GLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 404 (528)
Q Consensus 325 ~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~ 404 (528)
..+...+...++.+|||+|||+|..+..++++ +.+|+|+|+|+.+++.++++++..|++ +.+...|+..... .
T Consensus 20 ~~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~---g~~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~~d~~~~~~--~ 92 (195)
T TIGR00477 20 SAVREAVKTVAPCKTLDLGCGQGRNSLYLSLA---GYDVRAWDHNPASIASVLDMKARENLP--LRTDAYDINAAAL--N 92 (195)
T ss_pred HHHHHHhccCCCCcEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHhCCC--ceeEeccchhccc--c
Confidence 34445566656679999999999999999975 469999999999999999999888875 6677777754332 3
Q ss_pred CCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 405 ~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
.+||.|++..+... .+..+ ...+++.+.++|||||++++.+
T Consensus 93 ~~fD~I~~~~~~~~-------------~~~~~-------~~~~l~~~~~~LkpgG~lli~~ 133 (195)
T TIGR00477 93 EDYDFIFSTVVFMF-------------LQAGR-------VPEIIANMQAHTRPGGYNLIVA 133 (195)
T ss_pred CCCCEEEEeccccc-------------CCHHH-------HHHHHHHHHHHhCCCcEEEEEE
Confidence 57999997554311 11122 2346999999999999966543
|
Part of a tellurite-reducing operon tehA and tehB |
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.2e-11 Score=123.76 Aligned_cols=122 Identities=19% Similarity=0.355 Sum_probs=97.5
Q ss_pred hcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc-CCCCCC
Q 009708 330 VVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCD 408 (528)
Q Consensus 330 ~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~-~~~~fD 408 (528)
.+....+..+||+|||+|..++++|... +...++|+|+++.++..+.+++...|++| +.++++|+..+... ..+.+|
T Consensus 117 ~~~~~~~p~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI~~~~i~~a~~ka~~~gL~N-V~~i~~DA~~ll~~~~~~s~D 194 (390)
T PRK14121 117 FISKNQEKILIEIGFGSGRHLLYQAKNN-PNKLFIGIEIHTPSIEQVLKQIELLNLKN-LLIINYDARLLLELLPSNSVE 194 (390)
T ss_pred HhcCCCCCeEEEEcCcccHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCc-EEEEECCHHHhhhhCCCCcee
Confidence 3344567799999999999999999984 56899999999999999999999999987 99999999765322 247899
Q ss_pred EEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCC
Q 009708 409 KVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSID 469 (528)
Q Consensus 409 ~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~ 469 (528)
.|++..|+ .|..... .++ .+..+|+.+.++|+|||.+.+.|.+..
T Consensus 195 ~I~lnFPd------------PW~KkrH--RRl--v~~~fL~e~~RvLkpGG~l~l~TD~~~ 239 (390)
T PRK14121 195 KIFVHFPV------------PWDKKPH--RRV--ISEDFLNEALRVLKPGGTLELRTDSEL 239 (390)
T ss_pred EEEEeCCC------------Cccccch--hhc--cHHHHHHHHHHHcCCCcEEEEEEECHH
Confidence 99998766 2322211 122 367889999999999999999987643
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.1e-10 Score=117.34 Aligned_cols=112 Identities=16% Similarity=0.283 Sum_probs=89.3
Q ss_pred cCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEE
Q 009708 331 VDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKV 410 (528)
Q Consensus 331 l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~V 410 (528)
..+.+|++|||+|||+|..++.++..++..++|+++|+++.+++.++++.+..++++ ++++.+|+..++. ..+.||+|
T Consensus 73 ~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~-v~~~~~d~~~l~~-~~~~fD~V 150 (272)
T PRK11873 73 AELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTN-VEFRLGEIEALPV-ADNSVDVI 150 (272)
T ss_pred ccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCC-EEEEEcchhhCCC-CCCceeEE
Confidence 456789999999999999888888877666799999999999999999999999874 8899999877543 23589999
Q ss_pred EEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcC
Q 009708 411 LLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466 (528)
Q Consensus 411 l~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTc 466 (528)
+++.-. ...|+ ...++++++++|||||+|++++-
T Consensus 151 i~~~v~------~~~~d----------------~~~~l~~~~r~LkpGG~l~i~~~ 184 (272)
T PRK11873 151 ISNCVI------NLSPD----------------KERVFKEAFRVLKPGGRFAISDV 184 (272)
T ss_pred EEcCcc------cCCCC----------------HHHHHHHHHHHcCCCcEEEEEEe
Confidence 976321 11111 12468999999999999998653
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.2e-10 Score=110.58 Aligned_cols=111 Identities=27% Similarity=0.390 Sum_probs=79.6
Q ss_pred cCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccc-------ccC
Q 009708 331 VDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA-------DNS 403 (528)
Q Consensus 331 l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~-------~~~ 403 (528)
..+++|++|||+|||+|+.+..++....+.++|+++|+++.+ +..+ ++++++|+.+.. ...
T Consensus 28 ~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~~-i~~~~~d~~~~~~~~~l~~~~~ 95 (188)
T TIGR00438 28 KLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIEN-VDFIRGDFTDEEVLNKIRERVG 95 (188)
T ss_pred cccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCCC-ceEEEeeCCChhHHHHHHHHhC
Confidence 345789999999999999999999887666799999999864 2233 678888876532 012
Q ss_pred CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 404 ~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
.++||+|++|+++...|. |.. .... -...+..++..+.++|+|||++++.
T Consensus 96 ~~~~D~V~~~~~~~~~g~--------~~~--~~~~-~~~~~~~~l~~~~~~LkpgG~lvi~ 145 (188)
T TIGR00438 96 DDKVDVVMSDAAPNISGY--------WDI--DHLR-SIDLVELALDIAKEVLKPKGNFVVK 145 (188)
T ss_pred CCCccEEEcCCCCCCCCC--------ccc--cHHH-HHHHHHHHHHHHHHHccCCCEEEEE
Confidence 357999999975433333 111 1111 1234677899999999999999975
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.3e-11 Score=137.24 Aligned_cols=149 Identities=14% Similarity=0.208 Sum_probs=106.8
Q ss_pred CCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCC---------------ccEEEEcCcccccc
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN---------------SVIRTIHADLRTFA 400 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~---------------~~i~~~~~D~~~~~ 400 (528)
+.+|||+|||+|..++.++...+ ..+|+|+|+|+.+++.+++|+++++++ ++++++++|+....
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~-~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~ 197 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWL-PSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC 197 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc
Confidence 46899999999999999998753 469999999999999999999987642 36899999998755
Q ss_pred ccCCCCCCEEEEcCCCCCCccccC-Cchhh--------cc----CCHHHH---HHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 401 DNSTVKCDKVLLDAPCSGLGVLSK-RADLR--------WN----RRLEDM---EELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 401 ~~~~~~fD~Vl~D~Pcsg~G~~~~-~pd~~--------~~----~~~~~~---~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
.....+||+|++|||+-..+-+.. .|+++ +. .-.... ......+++++..+.++|+|||.++
T Consensus 198 ~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~-- 275 (1082)
T PLN02672 198 RDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMI-- 275 (1082)
T ss_pred cccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEE--
Confidence 322236999999999965553221 22332 10 000011 3456778999999999999999998
Q ss_pred cCCCCchhhHHHHHHHHhhCCCceE
Q 009708 465 TCSIDPEENEERVEAFLLRHPEFSI 489 (528)
Q Consensus 465 Tcs~~~~Ene~~v~~~l~~~~~~~~ 489 (528)
|-+.....+.+.+.++.+. +|..
T Consensus 276 -lEiG~~q~~~v~~~l~~~~-gf~~ 298 (1082)
T PLN02672 276 -FNMGGRPGQAVCERLFERR-GFRI 298 (1082)
T ss_pred -EEECccHHHHHHHHHHHHC-CCCe
Confidence 4555555555553566653 3444
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.6e-11 Score=110.56 Aligned_cols=108 Identities=24% Similarity=0.294 Sum_probs=85.1
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCC--CCCEEE
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV--KCDKVL 411 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~--~fD~Vl 411 (528)
-.|.+|||++||+|+.++.++++ +..+++.||.|...+..+++|++.+++...++++..|+..+...... .||+|+
T Consensus 42 i~g~~~LDlFAGSGaLGlEAlSR--GA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVf 119 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEALSR--GAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVF 119 (187)
T ss_pred cCCCEEEEecCCccHhHHHHHhC--CCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEE
Confidence 35889999999999999999986 56799999999999999999999999887899999999866544434 499999
Q ss_pred EcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHH-HHHHhccCcCCCEEEE
Q 009708 412 LDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDEL-LDAASLLVKPGGVLVY 463 (528)
Q Consensus 412 ~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~l-L~~a~~~LkpGG~Lvy 463 (528)
+|||+- .|+ ...+..+ +-.-..+|+|+|.+|.
T Consensus 120 lDPPy~-~~l-------------------~~~~~~~~~~~~~~~L~~~~~iv~ 152 (187)
T COG0742 120 LDPPYA-KGL-------------------LDKELALLLLEENGWLKPGALIVV 152 (187)
T ss_pred eCCCCc-cch-------------------hhHHHHHHHHHhcCCcCCCcEEEE
Confidence 999993 222 1111111 2234678999998884
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.23 E-value=8.8e-11 Score=122.34 Aligned_cols=78 Identities=17% Similarity=0.342 Sum_probs=66.7
Q ss_pred CeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC-------------
Q 009708 337 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS------------- 403 (528)
Q Consensus 337 ~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~------------- 403 (528)
.+|||+|||+|.+++.++.. ..+|+|+|+++.+++.+++|++.+|+++ ++++++|+.++....
T Consensus 199 ~~vlDl~~G~G~~sl~la~~---~~~v~~vE~~~~av~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~~~~~~~~ 274 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQN---FRRVLATEIAKPSVNAAQYNIAANNIDN-VQIIRMSAEEFTQAMNGVREFRRLKGID 274 (353)
T ss_pred CcEEEEeccccHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCCCc-EEEEEcCHHHHHHHHhhccccccccccc
Confidence 47999999999999999876 3589999999999999999999999986 999999998755321
Q ss_pred --CCCCCEEEEcCCCCC
Q 009708 404 --TVKCDKVLLDAPCSG 418 (528)
Q Consensus 404 --~~~fD~Vl~D~Pcsg 418 (528)
...||.|++|||-+|
T Consensus 275 ~~~~~~d~v~lDPPR~G 291 (353)
T TIGR02143 275 LKSYNCSTIFVDPPRAG 291 (353)
T ss_pred cccCCCCEEEECCCCCC
Confidence 124899999999765
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.1e-10 Score=119.66 Aligned_cols=109 Identities=13% Similarity=0.205 Sum_probs=86.9
Q ss_pred HHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCC
Q 009708 326 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 405 (528)
Q Consensus 326 l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~ 405 (528)
.+...++++++++|||+|||+|..+..+++..+..+.|+++|+++.+++.++++++.+|+++ +.++++|+....... .
T Consensus 71 ~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~n-V~~i~gD~~~~~~~~-~ 148 (322)
T PRK13943 71 LFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIEN-VIFVCGDGYYGVPEF-A 148 (322)
T ss_pred HHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCc-EEEEeCChhhccccc-C
Confidence 44556678889999999999999999999986655789999999999999999999999975 889999987654332 5
Q ss_pred CCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 406 ~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
.||+|+++... .. +...+.+.|+|||+++..
T Consensus 149 ~fD~Ii~~~g~------------------~~----------ip~~~~~~LkpgG~Lvv~ 179 (322)
T PRK13943 149 PYDVIFVTVGV------------------DE----------VPETWFTQLKEGGRVIVP 179 (322)
T ss_pred CccEEEECCch------------------HH----------hHHHHHHhcCCCCEEEEE
Confidence 69999986432 01 123356789999998864
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.1e-10 Score=115.95 Aligned_cols=112 Identities=22% Similarity=0.242 Sum_probs=87.3
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHc-CCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEE
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCL-SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVL 411 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~-~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl 411 (528)
+.++.+|||+|||+|..+..+++.+ .+.++|+|+|+|+.+++.+++++...+..++++++++|+..++. ..+|.|+
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~---~~~D~vv 130 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI---ENASMVV 130 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCC---CCCCEEe
Confidence 3467899999999999999888754 35689999999999999999999998887679999999987643 3589888
Q ss_pred EcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 412 LDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 412 ~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
+...- .. ... ..+..+++++.+.|||||.|++++..
T Consensus 131 ~~~~l------~~-------l~~-------~~~~~~l~~i~~~LkpGG~l~l~e~~ 166 (247)
T PRK15451 131 LNFTL------QF-------LEP-------SERQALLDKIYQGLNPGGALVLSEKF 166 (247)
T ss_pred hhhHH------Hh-------CCH-------HHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 53111 00 011 11345799999999999999988743
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.22 E-value=6.5e-11 Score=121.32 Aligned_cols=109 Identities=25% Similarity=0.255 Sum_probs=84.8
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEE
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 412 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~ 412 (528)
+.+|.+|||+|||+|..+..+++. +.+|+|+|.++.+++.++.++...+...+++++++|+.++.. ..++||+|++
T Consensus 129 ~~~g~~ILDIGCG~G~~s~~La~~---g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~-~~~~FD~Vi~ 204 (322)
T PLN02396 129 PFEGLKFIDIGCGGGLLSEPLARM---GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLAD-EGRKFDAVLS 204 (322)
T ss_pred CCCCCEEEEeeCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhh-ccCCCCEEEE
Confidence 456789999999999999988863 569999999999999999988776654458999999987653 2468999996
Q ss_pred cCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 413 DAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 413 D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
- +++.+ ......+|+.+.++|||||.++++|-.
T Consensus 205 ~------~vLeH----------------v~d~~~~L~~l~r~LkPGG~liist~n 237 (322)
T PLN02396 205 L------EVIEH----------------VANPAEFCKSLSALTIPNGATVLSTIN 237 (322)
T ss_pred h------hHHHh----------------cCCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 2 12111 111245799999999999999988643
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.5e-10 Score=113.09 Aligned_cols=148 Identities=14% Similarity=0.189 Sum_probs=96.6
Q ss_pred CCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEE
Q 009708 332 DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVL 411 (528)
Q Consensus 332 ~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl 411 (528)
.+.++.+|||+|||+|..++.++.+.. ..+|+++|+++.+++.+++++ + .++++++|+..+.. ..+||.|+
T Consensus 61 ~~~~~grVLDLGcGsGilsl~la~r~~-~~~V~gVDisp~al~~Ar~n~-----~-~v~~v~~D~~e~~~--~~kFDlII 131 (279)
T PHA03411 61 DAHCTGKVLDLCAGIGRLSFCMLHRCK-PEKIVCVELNPEFARIGKRLL-----P-EAEWITSDVFEFES--NEKFDVVI 131 (279)
T ss_pred ccccCCeEEEcCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhC-----c-CCEEEECchhhhcc--cCCCcEEE
Confidence 445567999999999999998887632 469999999999999998863 2 37889999988653 36799999
Q ss_pred EcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEE--EEcCCC-CchhhHHHHHHHHhhCCCce
Q 009708 412 LDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV--YSTCSI-DPEENEERVEAFLLRHPEFS 488 (528)
Q Consensus 412 ~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lv--ysTcs~-~~~Ene~~v~~~l~~~~~~~ 488 (528)
+|||+.....-.+.....|.-.......+ .-.+++.....+|+|+|.+. |+.-.+ |..-..+....+|+.+ +|+
T Consensus 132 sNPPF~~l~~~d~~~~~~~~GG~~g~~~l--~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl~~~~y~~~l~~~-g~~ 208 (279)
T PHA03411 132 SNPPFGKINTTDTKDVFEYTGGEFEFKVM--TLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTMKSNKYLKWSKQT-GLV 208 (279)
T ss_pred EcCCccccCchhhhhhhhhccCccccccc--cHHHHHhhhHheecCCceEEEEEeccccccccCCHHHHHHHHHhc-CcE
Confidence 99999643332222111111000000000 01456888899999999754 554332 3333445566777775 455
Q ss_pred Eec
Q 009708 489 IDP 491 (528)
Q Consensus 489 ~~~ 491 (528)
..+
T Consensus 209 ~~~ 211 (279)
T PHA03411 209 TYA 211 (279)
T ss_pred ecC
Confidence 544
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.5e-11 Score=120.64 Aligned_cols=134 Identities=25% Similarity=0.308 Sum_probs=92.9
Q ss_pred cchHHHHHHhcC--CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccc
Q 009708 321 DESAGLVVAVVD--PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 398 (528)
Q Consensus 321 d~~s~l~~~~l~--~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~ 398 (528)
.++.+++..++. ..+|.+|||+|||+|..++.++.+ +..+|+|+|++|.+++.+++|++.+|+.+++.+. ...+
T Consensus 145 H~TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~kl--GA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~~ 220 (295)
T PF06325_consen 145 HPTTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKL--GAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSED 220 (295)
T ss_dssp CHHHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHT--TBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTSC
T ss_pred CHHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHc--CCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--Eecc
Confidence 445566665543 467899999999999999988875 4679999999999999999999999999866553 1112
Q ss_pred ccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHH
Q 009708 399 FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVE 478 (528)
Q Consensus 399 ~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~ 478 (528)
.. ..+||+|++|-- +.....++....++|+|||+|+.|- +..++.+.+.
T Consensus 221 ~~---~~~~dlvvANI~-------------------------~~vL~~l~~~~~~~l~~~G~lIlSG--Il~~~~~~v~- 269 (295)
T PF06325_consen 221 LV---EGKFDLVVANIL-------------------------ADVLLELAPDIASLLKPGGYLILSG--ILEEQEDEVI- 269 (295)
T ss_dssp TC---CS-EEEEEEES--------------------------HHHHHHHHHHCHHHEEEEEEEEEEE--EEGGGHHHHH-
T ss_pred cc---cccCCEEEECCC-------------------------HHHHHHHHHHHHHhhCCCCEEEEcc--ccHHHHHHHH-
Confidence 11 268999998621 1223446778889999999999542 3344444454
Q ss_pred HHHhhCCCceEec
Q 009708 479 AFLLRHPEFSIDP 491 (528)
Q Consensus 479 ~~l~~~~~~~~~~ 491 (528)
..+++ +|++..
T Consensus 270 ~a~~~--g~~~~~ 280 (295)
T PF06325_consen 270 EAYKQ--GFELVE 280 (295)
T ss_dssp HHHHT--TEEEEE
T ss_pred HHHHC--CCEEEE
Confidence 44453 777654
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=99.21 E-value=9.6e-11 Score=111.45 Aligned_cols=81 Identities=15% Similarity=0.120 Sum_probs=69.2
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC---CCCCCEEE
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS---TVKCDKVL 411 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~---~~~fD~Vl 411 (528)
+|.+|||+|||+|..++.++.+ +..+|++||+++..++.+++|++.+++.++++++++|+..+.... ...||+|+
T Consensus 49 ~g~~vLDLfaGsG~lglea~sr--ga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~ 126 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSR--GAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIY 126 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEE
Confidence 4789999999999999999986 345899999999999999999999999766899999997654321 22489999
Q ss_pred EcCCCC
Q 009708 412 LDAPCS 417 (528)
Q Consensus 412 ~D~Pcs 417 (528)
+|||+.
T Consensus 127 ~DPPy~ 132 (189)
T TIGR00095 127 LDPPFF 132 (189)
T ss_pred ECcCCC
Confidence 999994
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=5e-11 Score=115.51 Aligned_cols=151 Identities=17% Similarity=0.188 Sum_probs=99.6
Q ss_pred cceeEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcC--CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEE
Q 009708 314 EGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLS--GQGLVYAIDINKGRLRILNETAKLHQVNSVIRT 391 (528)
Q Consensus 314 ~G~~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~--~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~ 391 (528)
.|.|+.....+..++. ....+.+|||+|||+|.+++.+++.+. +...|+|+|+++.+++.+++|.. .+.+
T Consensus 30 ~GqFfTP~~iAr~~~i--~~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~------~~~~ 101 (241)
T PHA03412 30 LGAFFTPIGLARDFTI--DACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP------EATW 101 (241)
T ss_pred CCccCCCHHHHHHHHH--hccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc------CCEE
Confidence 4555554443333331 122367999999999999999998653 34689999999999999998753 2678
Q ss_pred EcCccccccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEE--------E
Q 009708 392 IHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV--------Y 463 (528)
Q Consensus 392 ~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lv--------y 463 (528)
+++|+..... ..+||+|++|||+.-... .+. .. ...-......++..|.+++++|+.|+ |
T Consensus 102 ~~~D~~~~~~--~~~FDlIIsNPPY~~~~~--~d~--~a------r~~g~~~~~~li~~A~~Ll~~G~~ILP~~~~~~~y 169 (241)
T PHA03412 102 INADALTTEF--DTLFDMAISNPPFGKIKT--SDF--KG------KYTGAEFEYKVIERASQIARQGTFIIPQMSANFRY 169 (241)
T ss_pred EEcchhcccc--cCCccEEEECCCCCCccc--ccc--CC------cccccHHHHHHHHHHHHHcCCCEEEeCcccccCcc
Confidence 8999976542 358999999999964331 111 00 01112345568999999888877655 6
Q ss_pred EcCCCCc-hhh--HHHHHHHHhhC
Q 009708 464 STCSIDP-EEN--EERVEAFLLRH 484 (528)
Q Consensus 464 sTcs~~~-~En--e~~v~~~l~~~ 484 (528)
|-|-... .++ -..+.+|+++.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~ 193 (241)
T PHA03412 170 SGTHYFRQDESTTSSKCKKFLDET 193 (241)
T ss_pred cCccceeeccCcccHHHHHHHHhc
Confidence 6666552 222 23455666653
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.8e-10 Score=113.10 Aligned_cols=119 Identities=25% Similarity=0.317 Sum_probs=85.4
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEE
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 412 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~ 412 (528)
..++.+|||+|||+|..++.++.. + ..+|+|+|+|+.+++.+++|++.+++...+.+..+|. +||+|++
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~-g-~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~---------~fD~Vva 185 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKL-G-AKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDL---------KADVIVA 185 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC---------CcCEEEE
Confidence 457889999999999988877653 3 4579999999999999999999998854455444332 6999998
Q ss_pred cCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHHHhhCCCceEec
Q 009708 413 DAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDP 491 (528)
Q Consensus 413 D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~l~~~~~~~~~~ 491 (528)
+... . ....++..+.++|||||+++++.... +..+.+...+.++ +|++..
T Consensus 186 ni~~------------------~-------~~~~l~~~~~~~LkpgG~lilsgi~~---~~~~~v~~~l~~~-Gf~~~~ 235 (250)
T PRK00517 186 NILA------------------N-------PLLELAPDLARLLKPGGRLILSGILE---EQADEVLEAYEEA-GFTLDE 235 (250)
T ss_pred cCcH------------------H-------HHHHHHHHHHHhcCCCcEEEEEECcH---hhHHHHHHHHHHC-CCEEEE
Confidence 6321 1 12456889999999999999875432 2333444555554 465543
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.5e-10 Score=114.69 Aligned_cols=116 Identities=22% Similarity=0.188 Sum_probs=83.2
Q ss_pred HHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCC
Q 009708 328 VAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC 407 (528)
Q Consensus 328 ~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~f 407 (528)
...+.+.+|.+|||+|||+|..+..++.. +...|+|+|.|+.++..++...+..+....+.+...|+.+++.. ..|
T Consensus 114 l~~l~~~~g~~VLDvGCG~G~~~~~~~~~--g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~--~~F 189 (314)
T TIGR00452 114 LPHLSPLKGRTILDVGCGSGYHMWRMLGH--GAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL--YAF 189 (314)
T ss_pred HHhcCCCCCCEEEEeccCCcHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC--CCc
Confidence 33456677899999999999999888865 34589999999999877654444333334577888888776542 479
Q ss_pred CEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCC
Q 009708 408 DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSID 469 (528)
Q Consensus 408 D~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~ 469 (528)
|.|++. |++-+.+ ++ ...|+++.+.|||||.||+.|..+.
T Consensus 190 D~V~s~------gvL~H~~------dp----------~~~L~el~r~LkpGG~Lvletl~i~ 229 (314)
T TIGR00452 190 DTVFSM------GVLYHRK------SP----------LEHLKQLKHQLVIKGELVLETLVID 229 (314)
T ss_pred CEEEEc------chhhccC------CH----------HHHHHHHHHhcCCCCEEEEEEEEec
Confidence 999962 3332221 11 2358999999999999998876544
|
Known examples to date are restricted to the proteobacteria. |
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.1e-10 Score=106.86 Aligned_cols=120 Identities=23% Similarity=0.305 Sum_probs=91.1
Q ss_pred CeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEE----E
Q 009708 337 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVL----L 412 (528)
Q Consensus 337 ~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl----~ 412 (528)
++|||+|||.|.....+++. +=.+.++++|.|+.+++.|+..+++.|++|.|++.+.|++.. ....++||+|+ .
T Consensus 69 ~~VlDLGtGNG~~L~~L~~e-gf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~-~~~~~qfdlvlDKGT~ 146 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKE-GFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP-DFLSGQFDLVLDKGTL 146 (227)
T ss_pred cceeeccCCchHHHHHHHHh-cCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC-cccccceeEEeecCce
Confidence 48999999999999999885 335679999999999999999999999999899999999885 33457889886 2
Q ss_pred cCCC-CCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHH
Q 009708 413 DAPC-SGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERV 477 (528)
Q Consensus 413 D~Pc-sg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v 477 (528)
|+-. |+.+...|. .-.+...-++|+|||++|+.+|.+...|-.+.+
T Consensus 147 DAisLs~d~~~~r~-------------------~~Y~d~v~~ll~~~gifvItSCN~T~dELv~~f 193 (227)
T KOG1271|consen 147 DAISLSPDGPVGRL-------------------VVYLDSVEKLLSPGGIFVITSCNFTKDELVEEF 193 (227)
T ss_pred eeeecCCCCcccce-------------------eeehhhHhhccCCCcEEEEEecCccHHHHHHHH
Confidence 2221 222221110 112666778899999999999999887654443
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=2e-10 Score=120.43 Aligned_cols=114 Identities=25% Similarity=0.338 Sum_probs=88.2
Q ss_pred HHHHHHhcCCC-CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc
Q 009708 324 AGLVVAVVDPQ-PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 402 (528)
Q Consensus 324 s~l~~~~l~~~-~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~ 402 (528)
+.+++..+... ++.+|||++||+|..++.++...+ ..+|+++|+++..++.+++|++.+++++ ++++++|+..+...
T Consensus 45 ~~~v~~~~~~~~~~~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~~~~-~~v~~~Da~~~l~~ 122 (382)
T PRK04338 45 SVLVLRAFGPKLPRESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNGLEN-EKVFNKDANALLHE 122 (382)
T ss_pred HHHHHHHHHhhcCCCEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCc-eEEEhhhHHHHHhh
Confidence 33444444433 457899999999999999988643 4589999999999999999999999986 77999999776532
Q ss_pred CCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 403 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 403 ~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
..+||+|++||| |++. .+++.|...+++||.|.++ |+
T Consensus 123 -~~~fD~V~lDP~--Gs~~------------------------~~l~~al~~~~~~gilyvS-At 159 (382)
T PRK04338 123 -ERKFDVVDIDPF--GSPA------------------------PFLDSAIRSVKRGGLLCVT-AT 159 (382)
T ss_pred -cCCCCEEEECCC--CCcH------------------------HHHHHHHHHhcCCCEEEEE-ec
Confidence 357999999998 3221 3578888889998865544 54
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.1e-10 Score=111.97 Aligned_cols=121 Identities=18% Similarity=0.138 Sum_probs=98.5
Q ss_pred chHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccc
Q 009708 322 ESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD 401 (528)
Q Consensus 322 ~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~ 401 (528)
...+++..++......+||++|++.|.-|+++|..++..++|+++|.++...+.+++++++.|+.++|+++.+|+.+..+
T Consensus 66 ~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~ 145 (247)
T PLN02589 66 DEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLD 145 (247)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHH
Confidence 34455555555555669999999999999999998877899999999999999999999999999899999999988654
Q ss_pred cC------CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 402 NS------TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 402 ~~------~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
.. .++||.||+|+-- ..+...++.+.++|+|||.||.-.+-
T Consensus 146 ~l~~~~~~~~~fD~iFiDadK-------------------------~~Y~~y~~~~l~ll~~GGviv~DNvl 192 (247)
T PLN02589 146 QMIEDGKYHGTFDFIFVDADK-------------------------DNYINYHKRLIDLVKVGGVIGYDNTL 192 (247)
T ss_pred HHHhccccCCcccEEEecCCH-------------------------HHhHHHHHHHHHhcCCCeEEEEcCCC
Confidence 32 2589999999654 12344577888999999999876554
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.6e-10 Score=120.54 Aligned_cols=103 Identities=20% Similarity=0.252 Sum_probs=85.3
Q ss_pred CeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcCCC
Q 009708 337 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPC 416 (528)
Q Consensus 337 ~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~Pc 416 (528)
-+|||++||+|..++.++...++..+|+++|+++..++.+++|++.+++.+ +++++.|+..+......+||+|++||+-
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~-~~v~~~Da~~~l~~~~~~fDvIdlDPfG 124 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVEN-IEVPNEDAANVLRYRNRKFHVIDIDPFG 124 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEchhHHHHHHHhCCCCCEEEeCCCC
Confidence 489999999999999999875455789999999999999999999999875 8899999988765444679999999963
Q ss_pred CCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 417 SGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 417 sg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
+. ..+++.+.+.+++||.|. .|||
T Consensus 125 s~--------------------------~~fld~al~~~~~~glL~-vTaT 148 (374)
T TIGR00308 125 TP--------------------------APFVDSAIQASAERGLLL-VTAT 148 (374)
T ss_pred Cc--------------------------HHHHHHHHHhcccCCEEE-EEec
Confidence 21 135889999999988554 5554
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.2e-10 Score=112.90 Aligned_cols=106 Identities=25% Similarity=0.291 Sum_probs=83.6
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCc-----cEEEEcCccccccccCCCCC
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS-----VIRTIHADLRTFADNSTVKC 407 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~-----~i~~~~~D~~~~~~~~~~~f 407 (528)
+..|.+|||+|||.|..+..||+. +..|+|+|+++.+++.|++........+ ++++.+.|+.... ++|
T Consensus 87 ~~~g~~ilDvGCGgGLLSepLArl---ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~----~~f 159 (282)
T KOG1270|consen 87 PLLGMKILDVGCGGGLLSEPLARL---GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT----GKF 159 (282)
T ss_pred ccCCceEEEeccCccccchhhHhh---CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc----ccc
Confidence 334688999999999999999987 5799999999999999999955544333 2556666665543 569
Q ss_pred CEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 408 DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 408 D~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
|.|+| .++-+..+...++++...++|||||.|+++|-.
T Consensus 160 DaVvc----------------------sevleHV~dp~~~l~~l~~~lkP~G~lfittin 197 (282)
T KOG1270|consen 160 DAVVC----------------------SEVLEHVKDPQEFLNCLSALLKPNGRLFITTIN 197 (282)
T ss_pred ceeee----------------------HHHHHHHhCHHHHHHHHHHHhCCCCceEeeehh
Confidence 99996 345555555678899999999999999999864
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=5.6e-10 Score=111.29 Aligned_cols=116 Identities=21% Similarity=0.256 Sum_probs=87.5
Q ss_pred eecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccc
Q 009708 319 VQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 398 (528)
Q Consensus 319 ~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~ 398 (528)
.|...+..+...+.+.++.+|||+|||+|..+..+++.. +.++|+|+|+|+.+++.++++. ++ +.++.+|+..
T Consensus 15 ~~~~~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~-----~~-~~~~~~d~~~ 87 (258)
T PRK01683 15 ERTRPARDLLARVPLENPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRL-----PD-CQFVEADIAS 87 (258)
T ss_pred HhhcHHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhC-----CC-CeEEECchhc
Confidence 344445455556677788999999999999999999875 4579999999999999998763 33 7788999876
Q ss_pred ccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 399 FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 399 ~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
+.. ..+||+|+++.... |.. .+..+++.+.+.|||||.++..+
T Consensus 88 ~~~--~~~fD~v~~~~~l~------------~~~----------d~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 88 WQP--PQALDLIFANASLQ------------WLP----------DHLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred cCC--CCCccEEEEccChh------------hCC----------CHHHHHHHHHHhcCCCcEEEEEC
Confidence 543 35899999865431 111 12456999999999999998753
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.14 E-value=7e-10 Score=109.43 Aligned_cols=110 Identities=19% Similarity=0.187 Sum_probs=85.3
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEE
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 412 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~ 412 (528)
.++.+|||+|||+|..+..+++.+. +.++++++|+|+.+++.++++++..+...+++++++|+..+.. ..+|.|++
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~---~~~d~v~~ 128 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI---KNASMVIL 128 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCC---CCCCEEee
Confidence 4678999999999999999998753 4689999999999999999999887765568999999987653 35898875
Q ss_pred cCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcC
Q 009708 413 DAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466 (528)
Q Consensus 413 D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTc 466 (528)
.-.. .. ....+ ...+++++.+.|||||.++++..
T Consensus 129 ~~~l------~~-------~~~~~-------~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 129 NFTL------QF-------LPPED-------RIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred ecch------hh-------CCHHH-------HHHHHHHHHHhcCCCeEEEEeec
Confidence 3221 11 11111 23579999999999999998754
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.6e-10 Score=113.65 Aligned_cols=105 Identities=21% Similarity=0.290 Sum_probs=81.2
Q ss_pred HHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCC
Q 009708 327 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVK 406 (528)
Q Consensus 327 ~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~ 406 (528)
+...+...++.+|||+|||+|..+..++... +.++|+|+|+|+.+++.++++ .++++++|+..+.. .++
T Consensus 21 ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~-p~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~--~~~ 89 (255)
T PRK14103 21 LLARVGAERARRVVDLGCGPGNLTRYLARRW-PGAVIEALDSSPEMVAAARER--------GVDARTGDVRDWKP--KPD 89 (255)
T ss_pred HHHhCCCCCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHhc--------CCcEEEcChhhCCC--CCC
Confidence 3455666788999999999999999999875 457999999999999988652 26788999887642 368
Q ss_pred CCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 407 CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 407 fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
||+|+++.... |-. .+..+++++.+.|||||.+++.
T Consensus 90 fD~v~~~~~l~------------~~~----------d~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 90 TDVVVSNAALQ------------WVP----------EHADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred ceEEEEehhhh------------hCC----------CHHHHHHHHHHhCCCCcEEEEE
Confidence 99999865431 110 1245689999999999999875
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.8e-10 Score=112.09 Aligned_cols=110 Identities=14% Similarity=0.118 Sum_probs=85.7
Q ss_pred CCCeEEEeCCccchHHHH-HHHHcCCCcEEEEEcCChHHHHHHHHHHHH-cCCCccEEEEcCccccccccCCCCCCEEEE
Q 009708 335 PGQSIVDCCAAPGGKTLY-MASCLSGQGLVYAIDINKGRLRILNETAKL-HQVNSVIRTIHADLRTFADNSTVKCDKVLL 412 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~-la~~~~~~~~v~avD~s~~~l~~~~~n~~~-~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~ 412 (528)
++++|+|+|||+|+.|.. +++...++++++++|+++.+++.++++++. .|+.++++|..+|+.+.... .+.||+|++
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~-l~~FDlVF~ 201 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTES-LKEYDVVFL 201 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccc-cCCcCEEEE
Confidence 568999999999977544 343445678999999999999999999965 88988899999999886432 367999999
Q ss_pred cCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcC
Q 009708 413 DAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466 (528)
Q Consensus 413 D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTc 466 (528)
+ -+-+ | + ...+.+++++..+.|+|||.|++-+.
T Consensus 202 ~-ALi~-----------~--d-------k~~k~~vL~~l~~~LkPGG~Lvlr~~ 234 (296)
T PLN03075 202 A-ALVG-----------M--D-------KEEKVKVIEHLGKHMAPGALLMLRSA 234 (296)
T ss_pred e-cccc-----------c--c-------cccHHHHHHHHHHhcCCCcEEEEecc
Confidence 7 2211 0 0 01245679999999999999998764
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.4e-11 Score=121.97 Aligned_cols=167 Identities=19% Similarity=0.282 Sum_probs=105.2
Q ss_pred cceeEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHc------CCCcEEEEEcCChHHHHHHHHHHHHcCCCc
Q 009708 314 EGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCL------SGQGLVYAIDINKGRLRILNETAKLHQVNS 387 (528)
Q Consensus 314 ~G~~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~------~~~~~v~avD~s~~~l~~~~~n~~~~g~~~ 387 (528)
.|.|+....-+.+++.++.+.++++|+|.|||+|++.+.+...+ .....++|+|+++..+..++.|+...|...
T Consensus 25 ~G~~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~ 104 (311)
T PF02384_consen 25 LGQFYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDN 104 (311)
T ss_dssp CGGC---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHC
T ss_pred cceeehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccc
Confidence 57888888889999999999999999999999999999888754 245789999999999999999998877653
Q ss_pred c-EEEEcCccccccccC-CCCCCEEEEcCCCCCCcccc--CCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEE
Q 009708 388 V-IRTIHADLRTFADNS-TVKCDKVLLDAPCSGLGVLS--KRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463 (528)
Q Consensus 388 ~-i~~~~~D~~~~~~~~-~~~fD~Vl~D~Pcsg~G~~~--~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvy 463 (528)
. ..+.++|........ ..+||.|++|||++..+... ...+.+|... ...-......++.++.+.||+||++++
T Consensus 105 ~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Fi~~~l~~Lk~~G~~~~ 181 (311)
T PF02384_consen 105 SNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKY---FPPKSNAEYAFIEHALSLLKPGGRAAI 181 (311)
T ss_dssp BGCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTC---SSSTTEHHHHHHHHHHHTEEEEEEEEE
T ss_pred ccccccccccccccccccccccccccCCCCcccccccccccccccccccc---CCCccchhhhhHHHHHhhcccccceeE
Confidence 2 357788876554332 46899999999997653311 1112233221 000011122378999999999999765
Q ss_pred EcCC--CCchhhHHHHHHHHhh
Q 009708 464 STCS--IDPEENEERVEAFLLR 483 (528)
Q Consensus 464 sTcs--~~~~Ene~~v~~~l~~ 483 (528)
..-+ +.....+..+..+|.+
T Consensus 182 Ilp~~~L~~~~~~~~iR~~ll~ 203 (311)
T PF02384_consen 182 ILPNGFLFSSSSEKKIRKYLLE 203 (311)
T ss_dssp EEEHHHHHGSTHHHHHHHHHHH
T ss_pred EecchhhhccchHHHHHHHHHh
Confidence 5433 2232223445544443
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=4e-10 Score=115.11 Aligned_cols=122 Identities=28% Similarity=0.430 Sum_probs=97.7
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEc
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLD 413 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D 413 (528)
.+|++|+||+||-|.+|+.+|.. +..+|+|+|+||.+++.+++|++.|++.+.++.+++|+..+.... ..||.|+++
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~--g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~-~~aDrIim~ 263 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKK--GRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPEL-GVADRIIMG 263 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhc--CCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhcc-ccCCEEEeC
Confidence 46999999999999999999986 334599999999999999999999999998999999999987653 679999998
Q ss_pred CCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchh---hHHHHHHHHhhC
Q 009708 414 APCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEE---NEERVEAFLLRH 484 (528)
Q Consensus 414 ~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~E---ne~~v~~~l~~~ 484 (528)
-|-+. .+++..|.+.+++||++.|.+-.-.... ....+..+..+.
T Consensus 264 ~p~~a--------------------------~~fl~~A~~~~k~~g~iHyy~~~~e~~~~~~~~~~i~~~~~~~ 311 (341)
T COG2520 264 LPKSA--------------------------HEFLPLALELLKDGGIIHYYEFVPEDDIEERPEKRIKSAARKG 311 (341)
T ss_pred CCCcc--------------------------hhhHHHHHHHhhcCcEEEEEeccchhhcccchHHHHHHHHhhc
Confidence 88743 3458899999999999987665433221 334444444443
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=6.1e-10 Score=108.77 Aligned_cols=116 Identities=20% Similarity=0.252 Sum_probs=87.8
Q ss_pred HHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCC
Q 009708 327 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVK 406 (528)
Q Consensus 327 ~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~ 406 (528)
+...+.+.++.+|||+|||+|..+..++..+++.++++++|+++.+++.++++.... ..+++++.+|+..... ....
T Consensus 11 ~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~--~~~~~~~~~d~~~~~~-~~~~ 87 (241)
T PRK08317 11 TFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL--GPNVEFVRGDADGLPF-PDGS 87 (241)
T ss_pred HHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC--CCceEEEecccccCCC-CCCC
Confidence 344567788899999999999999999998755679999999999999999883332 2348889999876542 2468
Q ss_pred CCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 407 CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 407 fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
||.|+++... ..- .....+++++.++|||||.+++..+.
T Consensus 88 ~D~v~~~~~~------~~~----------------~~~~~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 88 FDAVRSDRVL------QHL----------------EDPARALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred ceEEEEechh------hcc----------------CCHHHHHHHHHHHhcCCcEEEEEecC
Confidence 9999975322 100 11234689999999999999988764
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.6e-09 Score=108.42 Aligned_cols=115 Identities=18% Similarity=0.240 Sum_probs=89.3
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEc
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLD 413 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D 413 (528)
.++.+|||+|||.|..+..++... +..+|+++|+++..++.+++++...+...+++++++|+.++......+||+|++|
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D 143 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVD 143 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEe
Confidence 345689999999999999998875 4689999999999999999998766554569999999988765445689999999
Q ss_pred CCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 414 APCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 414 ~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
+.. +.+. |. .+ ...++++.+.+.|+|||++++..++
T Consensus 144 ~~~-~~~~----~~--------~l-----~t~efl~~~~~~L~pgGvlvin~~~ 179 (262)
T PRK04457 144 GFD-GEGI----ID--------AL-----CTQPFFDDCRNALSSDGIFVVNLWS 179 (262)
T ss_pred CCC-CCCC----cc--------cc-----CcHHHHHHHHHhcCCCcEEEEEcCC
Confidence 632 2221 10 00 1246799999999999999976544
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.4e-10 Score=113.49 Aligned_cols=117 Identities=20% Similarity=0.303 Sum_probs=88.3
Q ss_pred eecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccc
Q 009708 319 VQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 398 (528)
Q Consensus 319 ~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~ 398 (528)
+|...+..+...+...++.+|||+|||+|..+..++.. ..+|+++|+|+.+++.++++.. . +.++++|+..
T Consensus 26 ~q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s~~~l~~a~~~~~-----~-~~~~~~d~~~ 96 (251)
T PRK10258 26 LQRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRER---GSQVTALDLSPPMLAQARQKDA-----A-DHYLAGDIES 96 (251)
T ss_pred HHHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCC-----C-CCEEEcCccc
Confidence 57777777777777666789999999999999888764 4799999999999999887642 1 3578888877
Q ss_pred ccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 399 FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 399 ~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
++. ..++||+|+++.+- .|..+ ...+|.++.++|||||.+++++-.
T Consensus 97 ~~~-~~~~fD~V~s~~~l------------~~~~d----------~~~~l~~~~~~Lk~gG~l~~~~~~ 142 (251)
T PRK10258 97 LPL-ATATFDLAWSNLAV------------QWCGN----------LSTALRELYRVVRPGGVVAFTTLV 142 (251)
T ss_pred CcC-CCCcEEEEEECchh------------hhcCC----------HHHHHHHHHHHcCCCeEEEEEeCC
Confidence 543 24679999975332 12111 234689999999999999988643
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=6.1e-10 Score=111.51 Aligned_cols=129 Identities=13% Similarity=0.155 Sum_probs=92.3
Q ss_pred cccceeEeecc-hHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEE
Q 009708 312 LKEGLCAVQDE-SAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIR 390 (528)
Q Consensus 312 ~~~G~~~~Qd~-~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~ 390 (528)
|..|++..... ....++..+.+.++.+|||+|||+|..+..++... .++|+++|+++.+++.+++++.. .+++.
T Consensus 28 ~g~~~~~~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~---~~~i~ 102 (263)
T PTZ00098 28 FGEDYISSGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSD---KNKIE 102 (263)
T ss_pred hCCCCCCCCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCc---CCceE
Confidence 44455555422 24455566788899999999999999999988753 46999999999999999987654 23588
Q ss_pred EEcCccccccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcC
Q 009708 391 TIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466 (528)
Q Consensus 391 ~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTc 466 (528)
++++|+...+. ..++||+|++..... + .... ....+++++.++|||||+|+++..
T Consensus 103 ~~~~D~~~~~~-~~~~FD~V~s~~~l~------h-------~~~~-------d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 103 FEANDILKKDF-PENTFDMIYSRDAIL------H-------LSYA-------DKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred EEECCcccCCC-CCCCeEEEEEhhhHH------h-------CCHH-------HHHHHHHHHHHHcCCCcEEEEEEe
Confidence 99999876432 236899999721110 0 0001 234579999999999999997654
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.10 E-value=7.2e-11 Score=97.98 Aligned_cols=95 Identities=21% Similarity=0.215 Sum_probs=72.3
Q ss_pred EEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcCCCCCC
Q 009708 340 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGL 419 (528)
Q Consensus 340 LDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~ 419 (528)
||+|||+|..+..+++. +..+|+++|+++.+++.++++....+ +.++++|+..++. ..++||.|++.--.
T Consensus 1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~~~----~~~~~~d~~~l~~-~~~sfD~v~~~~~~--- 70 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKNEG----VSFRQGDAEDLPF-PDNSFDVVFSNSVL--- 70 (95)
T ss_dssp EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTTST----EEEEESBTTSSSS--TT-EEEEEEESHG---
T ss_pred CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhcccccC----chheeehHHhCcc-ccccccccccccce---
Confidence 89999999999999987 56899999999999999998776543 5589999988853 35799999973221
Q ss_pred ccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEE
Q 009708 420 GVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463 (528)
Q Consensus 420 G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvy 463 (528)
.. + ..+..+++++.++|||||++++
T Consensus 71 ---~~------------~----~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 71 ---HH------------L----EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp ---GG------------S----SHHHHHHHHHHHHEEEEEEEEE
T ss_pred ---ee------------c----cCHHHHHHHHHHHcCcCeEEeC
Confidence 10 0 2345679999999999999984
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.5e-10 Score=97.11 Aligned_cols=99 Identities=26% Similarity=0.364 Sum_probs=73.9
Q ss_pred EEEeCCccchHHHHHHHHcC--CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcCCC
Q 009708 339 IVDCCAAPGGKTLYMASCLS--GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPC 416 (528)
Q Consensus 339 VLDl~aG~G~kt~~la~~~~--~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~Pc 416 (528)
|||+|||+|..+..++..+. ...+++++|+|+.+++.++++....+.+ ++++++|+.++... .++||+|++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~--~~~~~~D~~~l~~~-~~~~D~v~~---- 73 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPK--VRFVQADARDLPFS-DGKFDLVVC---- 73 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTT--SEEEESCTTCHHHH-SSSEEEEEE----
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCc--eEEEECCHhHCccc-CCCeeEEEE----
Confidence 79999999999999998862 2379999999999999999999887773 78999999987643 468999996
Q ss_pred CCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCC
Q 009708 417 SGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459 (528)
Q Consensus 417 sg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG 459 (528)
++..+ .. .+++++ ..++++..++|+|||
T Consensus 74 ~~~~~-~~-------~~~~~~-------~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 74 SGLSL-HH-------LSPEEL-------EALLRRIARLLRPGG 101 (101)
T ss_dssp -TTGG-GG-------SSHHHH-------HHHHHHHHHTEEEEE
T ss_pred cCCcc-CC-------CCHHHH-------HHHHHHHHHHhCCCC
Confidence 22111 11 233333 456999999999998
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.7e-10 Score=120.55 Aligned_cols=117 Identities=22% Similarity=0.249 Sum_probs=88.3
Q ss_pred HHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCC
Q 009708 325 GLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 404 (528)
Q Consensus 325 ~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~ 404 (528)
..+++.+.+.++.+|||+|||+|..+..++... +.+|+|+|+|+.+++.+++++.. ...+++++++|+...+. ..
T Consensus 256 e~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~~--~~~~v~~~~~d~~~~~~-~~ 330 (475)
T PLN02336 256 KEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAIG--RKCSVEFEVADCTKKTY-PD 330 (475)
T ss_pred HHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhhc--CCCceEEEEcCcccCCC-CC
Confidence 445556667788899999999999999999864 46899999999999999988763 33458999999877542 23
Q ss_pred CCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCC
Q 009708 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 468 (528)
Q Consensus 405 ~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~ 468 (528)
++||+|++.. ++.+-++ ...+++.+.++|||||+|++++...
T Consensus 331 ~~fD~I~s~~------~l~h~~d----------------~~~~l~~~~r~LkpgG~l~i~~~~~ 372 (475)
T PLN02336 331 NSFDVIYSRD------TILHIQD----------------KPALFRSFFKWLKPGGKVLISDYCR 372 (475)
T ss_pred CCEEEEEECC------cccccCC----------------HHHHHHHHHHHcCCCeEEEEEEecc
Confidence 6799999631 2222111 2356999999999999999876443
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.08 E-value=8.4e-10 Score=107.53 Aligned_cols=105 Identities=17% Similarity=0.106 Sum_probs=83.2
Q ss_pred CeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcCCC
Q 009708 337 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPC 416 (528)
Q Consensus 337 ~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~Pc 416 (528)
++|||+|||+|+.+..+++.. +..+|+++|+|+..++.++++++..|+.++++++..|+...+. .++||+|++.
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~--~~~fD~I~~~--- 74 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERH-PHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPF--PDTYDLVFGF--- 74 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCC--CCCCCEeehH---
Confidence 379999999999999999875 3578999999999999999999999998889999999865432 3579999852
Q ss_pred CCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcC
Q 009708 417 SGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466 (528)
Q Consensus 417 sg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTc 466 (528)
+++. . ......+++.+.++|||||++++++.
T Consensus 75 ---~~l~---------------~-~~~~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 75 ---EVIH---------------H-IKDKMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred ---HHHH---------------h-CCCHHHHHHHHHHHcCCCCEEEEEEc
Confidence 1111 1 11134579999999999999997754
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.08 E-value=3e-09 Score=103.34 Aligned_cols=125 Identities=20% Similarity=0.388 Sum_probs=103.3
Q ss_pred eEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcc
Q 009708 317 CAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL 396 (528)
Q Consensus 317 ~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~ 396 (528)
-++--+...++...|++.||.+||+.|+|+|+.+.+++..+.+.|+++.+|+...+.+.+.+.++..|+.+++++.+-|.
T Consensus 87 QI~Yt~Dia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDV 166 (314)
T KOG2915|consen 87 QILYTPDIAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDV 166 (314)
T ss_pred eEEecccHHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeec
Confidence 33334455678888999999999999999999999999999999999999999999999999999999998899999998
Q ss_pred ccccccC-CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCch
Q 009708 397 RTFADNS-TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPE 471 (528)
Q Consensus 397 ~~~~~~~-~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~ 471 (528)
....... ...+|.|++|.|. .| ..+-+++..||.+|.-+ |++.|.
T Consensus 167 c~~GF~~ks~~aDaVFLDlPa------------Pw---------------~AiPha~~~lk~~g~r~---csFSPC 212 (314)
T KOG2915|consen 167 CGSGFLIKSLKADAVFLDLPA------------PW---------------EAIPHAAKILKDEGGRL---CSFSPC 212 (314)
T ss_pred ccCCccccccccceEEEcCCC------------hh---------------hhhhhhHHHhhhcCceE---EeccHH
Confidence 7654322 4689999999887 22 13667778888877544 677775
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=7.7e-10 Score=113.87 Aligned_cols=115 Identities=23% Similarity=0.284 Sum_probs=84.4
Q ss_pred HHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCC
Q 009708 326 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 405 (528)
Q Consensus 326 l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~ 405 (528)
.+...+.+..|.+|||+|||+|..+..++.. +...|+|+|.|+.++...+...+..+...++.++.+|+.+++. .+
T Consensus 113 ~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~--g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~--~~ 188 (322)
T PRK15068 113 RVLPHLSPLKGRTVLDVGCGNGYHMWRMLGA--GAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA--LK 188 (322)
T ss_pred HHHHhhCCCCCCEEEEeccCCcHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC--cC
Confidence 3444566667889999999999999999885 3457999999999887655544444434358899999988764 47
Q ss_pred CCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcC
Q 009708 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466 (528)
Q Consensus 406 ~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTc 466 (528)
.||.|++ .|++.+.+ + ...+|+++.+.|+|||.+++++.
T Consensus 189 ~FD~V~s------~~vl~H~~------d----------p~~~L~~l~~~LkpGG~lvl~~~ 227 (322)
T PRK15068 189 AFDTVFS------MGVLYHRR------S----------PLDHLKQLKDQLVPGGELVLETL 227 (322)
T ss_pred CcCEEEE------CChhhccC------C----------HHHHHHHHHHhcCCCcEEEEEEE
Confidence 8999996 23332211 1 12458999999999999998754
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.5e-09 Score=106.31 Aligned_cols=119 Identities=21% Similarity=0.312 Sum_probs=90.4
Q ss_pred HHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCC
Q 009708 327 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVK 406 (528)
Q Consensus 327 ~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~ 406 (528)
+...+...++.+|||+|||+|..+..++...+...+++++|+++.+++.+++++...+..+.+.++.+|+..... ..+.
T Consensus 43 ~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~ 121 (239)
T PRK00216 43 TIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPF-PDNS 121 (239)
T ss_pred HHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCC-CCCC
Confidence 444555667889999999999999999987543579999999999999999999887666668999999987653 2467
Q ss_pred CCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCC
Q 009708 407 CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 468 (528)
Q Consensus 407 fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~ 468 (528)
||+|++.- ++...+ + ...+|+.+.++|+|||.+++.+.+.
T Consensus 122 ~D~I~~~~------~l~~~~---------~-------~~~~l~~~~~~L~~gG~li~~~~~~ 161 (239)
T PRK00216 122 FDAVTIAF------GLRNVP---------D-------IDKALREMYRVLKPGGRLVILEFSK 161 (239)
T ss_pred ccEEEEec------ccccCC---------C-------HHHHHHHHHHhccCCcEEEEEEecC
Confidence 99998621 111111 1 1346889999999999998876543
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.3e-09 Score=110.46 Aligned_cols=103 Identities=23% Similarity=0.198 Sum_probs=79.7
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDA 414 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~ 414 (528)
++.+|||+|||+|..+..++.. +.+|+|+|+|+.+++.++++++..++ + +++...|+..... .++||+|++..
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~---g~~V~avD~s~~ai~~~~~~~~~~~l-~-v~~~~~D~~~~~~--~~~fD~I~~~~ 192 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL---GFDVTAVDINQQSLENLQEIAEKENL-N-IRTGLYDINSASI--QEEYDFILSTV 192 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHcCC-c-eEEEEechhcccc--cCCccEEEEcc
Confidence 3459999999999999999874 47999999999999999999999888 3 7888888866432 46899999753
Q ss_pred CCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 415 PCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 415 Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
.... .+.. ....+++.+.++|+|||++++.
T Consensus 193 vl~~-------------l~~~-------~~~~~l~~~~~~LkpgG~~l~v 222 (287)
T PRK12335 193 VLMF-------------LNRE-------RIPAIIKNMQEHTNPGGYNLIV 222 (287)
T ss_pred hhhh-------------CCHH-------HHHHHHHHHHHhcCCCcEEEEE
Confidence 3210 1111 2235699999999999996653
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.7e-09 Score=113.79 Aligned_cols=114 Identities=16% Similarity=0.246 Sum_probs=86.1
Q ss_pred HHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC
Q 009708 324 AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS 403 (528)
Q Consensus 324 s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~ 403 (528)
...+...+.+++|.+|||+|||+|+.+..+++.. +.+|+|+|+|+.+++.++++++ ++. +++...|...+
T Consensus 156 ~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~--~l~--v~~~~~D~~~l---- 225 (383)
T PRK11705 156 LDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCA--GLP--VEIRLQDYRDL---- 225 (383)
T ss_pred HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhc--cCe--EEEEECchhhc----
Confidence 3456667788899999999999999999999864 4699999999999999999885 332 77888887664
Q ss_pred CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 404 ~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
.++||.|++.... ..-+ .. ....+++.+.++|||||++++.+..
T Consensus 226 ~~~fD~Ivs~~~~------ehvg-------~~-------~~~~~l~~i~r~LkpGG~lvl~~i~ 269 (383)
T PRK11705 226 NGQFDRIVSVGMF------EHVG-------PK-------NYRTYFEVVRRCLKPDGLFLLHTIG 269 (383)
T ss_pred CCCCCEEEEeCch------hhCC-------hH-------HHHHHHHHHHHHcCCCcEEEEEEcc
Confidence 2579999863221 1100 01 1235689999999999999987644
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.6e-09 Score=102.44 Aligned_cols=111 Identities=26% Similarity=0.254 Sum_probs=80.8
Q ss_pred HHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCC
Q 009708 328 VAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC 407 (528)
Q Consensus 328 ~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~f 407 (528)
...+..-++.++||+|||.|..++++|++ +-.|+|+|+|+..++.+++.++..+++ |++.+.|+..... ++.|
T Consensus 23 ~~a~~~~~~g~~LDlgcG~GRNalyLA~~---G~~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~~--~~~y 95 (192)
T PF03848_consen 23 LEAVPLLKPGKALDLGCGEGRNALYLASQ---GFDVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFDF--PEEY 95 (192)
T ss_dssp HHHCTTS-SSEEEEES-TTSHHHHHHHHT---T-EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS---TTTE
T ss_pred HHHHhhcCCCcEEEcCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhccc--cCCc
Confidence 34455545669999999999999999986 578999999999999999999999987 8889999877653 3679
Q ss_pred CEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 408 DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 408 D~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
|.|++.. ++.. ..++.+ ..+++...+.++|||++++.|
T Consensus 96 D~I~st~------v~~f-------L~~~~~-------~~i~~~m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 96 DFIVSTV------VFMF-------LQRELR-------PQIIENMKAATKPGGYNLIVT 133 (192)
T ss_dssp EEEEEES------SGGG-------S-GGGH-------HHHHHHHHHTEEEEEEEEEEE
T ss_pred CEEEEEE------Eecc-------CCHHHH-------HHHHHHHHhhcCCcEEEEEEE
Confidence 9998531 1111 111222 235888899999999988854
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.1e-09 Score=106.44 Aligned_cols=73 Identities=21% Similarity=0.287 Sum_probs=63.2
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEE
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 412 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~ 412 (528)
..++.+|||+|||+|..+..++.. ..+|+|+|+|+.++..+++++...+..+++++.++|+.... .+||+|++
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~---~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~fD~ii~ 125 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKR---GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC----GEFDIVVC 125 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC----CCcCEEEE
Confidence 456889999999999999999874 45899999999999999999988887556899999987754 57999986
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.1e-09 Score=108.72 Aligned_cols=125 Identities=18% Similarity=0.187 Sum_probs=94.7
Q ss_pred hHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc
Q 009708 323 SAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 402 (528)
Q Consensus 323 ~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~ 402 (528)
....+...++..++.+|||+|||+|..+..+++.. +..+++++|. +..++.+++|++..|+.++++++.+|+.+...
T Consensus 137 ~~~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~- 213 (306)
T TIGR02716 137 AIQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESY- 213 (306)
T ss_pred HHHHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHC-CCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCC-
Confidence 34556666777888999999999999999999985 4679999997 78999999999999998889999999876332
Q ss_pred CCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchh
Q 009708 403 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEE 472 (528)
Q Consensus 403 ~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~E 472 (528)
..+|.|++- .++.. +..+.. ..+|+++.+.|+|||+|+.....+...+
T Consensus 214 --~~~D~v~~~------~~lh~-------~~~~~~-------~~il~~~~~~L~pgG~l~i~d~~~~~~~ 261 (306)
T TIGR02716 214 --PEADAVLFC------RILYS-------ANEQLS-------TIMCKKAFDAMRSGGRLLILDMVIDDPE 261 (306)
T ss_pred --CCCCEEEeE------hhhhc-------CChHHH-------HHHHHHHHHhcCCCCEEEEEEeccCCCC
Confidence 247988751 11111 111222 3469999999999999998776554433
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.8e-09 Score=109.68 Aligned_cols=141 Identities=17% Similarity=0.216 Sum_probs=107.3
Q ss_pred cccccceeEeecch------HHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCC------------------------
Q 009708 310 GLLKEGLCAVQDES------AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSG------------------------ 359 (528)
Q Consensus 310 ~~~~~G~~~~Qd~~------s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~------------------------ 359 (528)
++++.||=..+.++ +..++.+.+-+++..++|..||+|.+.+.+|.+..+
T Consensus 160 sLhkRGyR~~~g~ApLketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~ 239 (381)
T COG0116 160 SLHKRGYRVYDGPAPLKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDK 239 (381)
T ss_pred chhhccccccCCCCCchHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHH
Confidence 34555554444333 344555566778889999999999999998876421
Q ss_pred -------Cc-------EEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcCCCCCCccccCC
Q 009708 360 -------QG-------LVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKR 425 (528)
Q Consensus 360 -------~~-------~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~ 425 (528)
.. .++|+|+++.+++.|+.|+++.|+.+.|++.++|+..+.... +.+|+||+|||+. .
T Consensus 240 ~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~-~~~gvvI~NPPYG---e---- 311 (381)
T COG0116 240 LREEAEERARRGKELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPL-EEYGVVISNPPYG---E---- 311 (381)
T ss_pred HHHHHHHHHhhcCccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCC-CcCCEEEeCCCcc---h----
Confidence 01 378999999999999999999999999999999999987654 6899999999993 1
Q ss_pred chhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 426 ADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 426 pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
+. .+-.....+|..+.+.+.+.++--+..|++|
T Consensus 312 ---Rl----g~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt 344 (381)
T COG0116 312 ---RL----GSEALVAKLYREFGRTLKRLLAGWSRYVFTT 344 (381)
T ss_pred ---hc----CChhhHHHHHHHHHHHHHHHhcCCceEEEEc
Confidence 11 1113445578899999999999878888765
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.8e-09 Score=115.44 Aligned_cols=127 Identities=17% Similarity=0.233 Sum_probs=88.6
Q ss_pred hcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccc-cCCCCCC
Q 009708 330 VVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NSTVKCD 408 (528)
Q Consensus 330 ~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~-~~~~~fD 408 (528)
+++..++.+|||+|||+|..+..+++.. +.++|+|+|+|+.+++.+++++...+. .+.++++|+.+++. ..+++||
T Consensus 413 i~d~~~g~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~~g~--~ie~I~gDa~dLp~~fedeSFD 489 (677)
T PRK06922 413 ILDYIKGDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNEGR--SWNVIKGDAINLSSSFEKESVD 489 (677)
T ss_pred HhhhcCCCEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCC--CeEEEEcchHhCccccCCCCEE
Confidence 3444568899999999999998888874 468999999999999999998876654 37889999887653 2246899
Q ss_pred EEEEcCCCCCC-ccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCC
Q 009708 409 KVLLDAPCSGL-GVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSID 469 (528)
Q Consensus 409 ~Vl~D~Pcsg~-G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~ 469 (528)
+|++.++.-.. ..+. ..+..| .. .....+|+++.+.|||||.++...-++.
T Consensus 490 vVVsn~vLH~L~syIp-~~g~~f--~~-------edl~kiLreI~RVLKPGGrLII~D~v~~ 541 (677)
T PRK06922 490 TIVYSSILHELFSYIE-YEGKKF--NH-------EVIKKGLQSAYEVLKPGGRIIIRDGIMT 541 (677)
T ss_pred EEEEchHHHhhhhhcc-cccccc--cH-------HHHHHHHHHHHHHcCCCcEEEEEeCccC
Confidence 99976543100 0000 000001 11 2334569999999999999998754333
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.1e-09 Score=106.65 Aligned_cols=114 Identities=13% Similarity=0.206 Sum_probs=86.5
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcC--C--CccEEEEcCccccccccCCCCCCEE
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQ--V--NSVIRTIHADLRTFADNSTVKCDKV 410 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g--~--~~~i~~~~~D~~~~~~~~~~~fD~V 410 (528)
...+||++|||.|+.+..+++. .+..+|++||+++..++.+++++...+ . +.+++++.+|+..+.....++||+|
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~-~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKH-PSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcC-CCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 3569999999999999999875 345689999999999999999987643 2 4468999999998765445789999
Q ss_pred EEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 411 LLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 411 l~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
++|.+-. .|. . .. + ...++++.+.+.|+|||+++..+.+
T Consensus 155 i~D~~dp-~~~-----~-------~~---l--~t~ef~~~~~~~L~~gGvlv~~~~~ 193 (283)
T PRK00811 155 IVDSTDP-VGP-----A-------EG---L--FTKEFYENCKRALKEDGIFVAQSGS 193 (283)
T ss_pred EECCCCC-CCc-----h-------hh---h--hHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 9996421 011 0 11 1 2356788999999999999875443
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.2e-09 Score=88.13 Aligned_cols=103 Identities=24% Similarity=0.348 Sum_probs=81.6
Q ss_pred eEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcCCCC
Q 009708 338 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCS 417 (528)
Q Consensus 338 ~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~Pcs 417 (528)
+|+|+|||+|..+..++. .+..+++++|+++..+..++++....+.. .+++++.|..+.......+||+|++++++.
T Consensus 1 ~ildig~G~G~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~ 77 (107)
T cd02440 1 RVLDLGCGTGALALALAS--GPGARVTGVDISPVALELARKAAAALLAD-NVEVLKGDAEELPPEADESFDVIISDPPLH 77 (107)
T ss_pred CeEEEcCCccHHHHHHhc--CCCCEEEEEeCCHHHHHHHHHHHhccccc-ceEEEEcChhhhccccCCceEEEEEcccee
Confidence 489999999999998887 34679999999999999998655544444 488999999887642346799999999984
Q ss_pred CCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 418 GLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 418 g~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
.. ...+..+++.+.+.+++||.++++
T Consensus 78 ~~---------------------~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 78 HL---------------------VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred eh---------------------hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 31 234456789999999999999865
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.8e-09 Score=98.64 Aligned_cols=84 Identities=21% Similarity=0.260 Sum_probs=70.6
Q ss_pred HHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCC
Q 009708 326 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 405 (528)
Q Consensus 326 l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~ 405 (528)
.++..+++.++++|||+|||+|..|..+++. .++|+++|+++.+++.+++++.. .+ +++++++|+.++... ..
T Consensus 4 ~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~---~~~v~~vE~~~~~~~~~~~~~~~--~~-~v~ii~~D~~~~~~~-~~ 76 (169)
T smart00650 4 KIVRAANLRPGDTVLEIGPGKGALTEELLER---AARVTAIEIDPRLAPRLREKFAA--AD-NLTVIHGDALKFDLP-KL 76 (169)
T ss_pred HHHHhcCCCCcCEEEEECCCccHHHHHHHhc---CCeEEEEECCHHHHHHHHHHhcc--CC-CEEEEECchhcCCcc-cc
Confidence 3455667788899999999999999999986 46899999999999999998864 23 489999999887543 24
Q ss_pred CCCEEEEcCCC
Q 009708 406 KCDKVLLDAPC 416 (528)
Q Consensus 406 ~fD~Vl~D~Pc 416 (528)
.||.|+.|+|+
T Consensus 77 ~~d~vi~n~Py 87 (169)
T smart00650 77 QPYKVVGNLPY 87 (169)
T ss_pred CCCEEEECCCc
Confidence 69999999998
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.97 E-value=5.2e-09 Score=99.26 Aligned_cols=126 Identities=28% Similarity=0.288 Sum_probs=92.1
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccc------cC-CC
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD------NS-TV 405 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~------~~-~~ 405 (528)
+.+|..|+||||+||+++..+++.++..+.|+|+|+.|-.. +.+ |.++++|++.-.. .. ..
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~-----------~~~-V~~iq~d~~~~~~~~~l~~~l~~~ 110 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP-----------IPG-VIFLQGDITDEDTLEKLLEALGGA 110 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc-----------CCC-ceEEeeeccCccHHHHHHHHcCCC
Confidence 35689999999999999999999998888899999987553 444 8899999876322 11 23
Q ss_pred CCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHHHhhC
Q 009708 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRH 484 (528)
Q Consensus 406 ~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~l~~~ 484 (528)
.+|+|++|+..--+|.... +......+-...++-|..+|+|||.++ |..+..++++.+.+.++++
T Consensus 111 ~~DvV~sD~ap~~~g~~~~-----------Dh~r~~~L~~~a~~~a~~vL~~~G~fv---~K~fqg~~~~~~l~~~~~~ 175 (205)
T COG0293 111 PVDVVLSDMAPNTSGNRSV-----------DHARSMYLCELALEFALEVLKPGGSFV---AKVFQGEDFEDLLKALRRL 175 (205)
T ss_pred CcceEEecCCCCcCCCccc-----------cHHHHHHHHHHHHHHHHHeeCCCCeEE---EEEEeCCCHHHHHHHHHHh
Confidence 4799999966655555222 122223334456888899999999999 6677777776666667665
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.3e-09 Score=102.37 Aligned_cols=139 Identities=21% Similarity=0.226 Sum_probs=88.5
Q ss_pred EeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccc
Q 009708 318 AVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 397 (528)
Q Consensus 318 ~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~ 397 (528)
|-|..-.+++...|.-..-.++||+|||.|.+|..||.+ ..+++++|+++..++.+++++.. .++ |++++.|+.
T Consensus 26 YE~~K~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~r---Cd~LlavDis~~Al~~Ar~Rl~~--~~~-V~~~~~dvp 99 (201)
T PF05401_consen 26 YERRKYRATLLAALPRRRYRRALEVGCSIGVLTERLAPR---CDRLLAVDISPRALARARERLAG--LPH-VEWIQADVP 99 (201)
T ss_dssp HHHHHHHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGG---EEEEEEEES-HHHHHHHHHHTTT---SS-EEEEES-TT
T ss_pred HHHHHHHHHHHHhcCccccceeEecCCCccHHHHHHHHh---hCceEEEeCCHHHHHHHHHhcCC--CCC-eEEEECcCC
Confidence 334433344443344444568999999999999999987 46899999999999999998764 454 999999998
Q ss_pred cccccCCCCCCEEEEcCCCCCCccccCCchhhccCC-HHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC------CCc
Q 009708 398 TFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRR-LEDMEELKILQDELLDAASLLVKPGGVLVYSTCS------IDP 470 (528)
Q Consensus 398 ~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~-~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs------~~~ 470 (528)
.+.+ .++||+|++ |..+ |..+ .+++.. ++..+...|+|||.||+.+-. +-.
T Consensus 100 ~~~P--~~~FDLIV~----SEVl---------YYL~~~~~L~~-------~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh 157 (201)
T PF05401_consen 100 EFWP--EGRFDLIVL----SEVL---------YYLDDAEDLRA-------ALDRLVAALAPGGHLVFGHARDANCRRWGH 157 (201)
T ss_dssp T-----SS-EEEEEE----ES-G---------GGSSSHHHHHH-------HHHHHHHTEEEEEEEEEEEE-HHHHHHTT-
T ss_pred CCCC--CCCeeEEEE----ehHh---------HcCCCHHHHHH-------HHHHHHHHhCCCCEEEEEEecCCcccccCc
Confidence 7654 478999996 4333 3333 234443 488889999999999986532 111
Q ss_pred hhhHHHHHHHHhhC
Q 009708 471 EENEERVEAFLLRH 484 (528)
Q Consensus 471 ~Ene~~v~~~l~~~ 484 (528)
.-+.+.|...+.++
T Consensus 158 ~~ga~tv~~~~~~~ 171 (201)
T PF05401_consen 158 AAGAETVLEMLQEH 171 (201)
T ss_dssp S--HHHHHHHHHHH
T ss_pred ccchHHHHHHHHHH
Confidence 22344555555554
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.2e-08 Score=100.02 Aligned_cols=117 Identities=20% Similarity=0.195 Sum_probs=88.7
Q ss_pred HHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCC
Q 009708 325 GLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 404 (528)
Q Consensus 325 ~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~ 404 (528)
.++...+.+.++.+|||+|||+|..+..+++. ..+++++|+++..++.+++++...+.. ++++..|...+.....
T Consensus 38 ~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~ 112 (233)
T PRK05134 38 NYIREHAGGLFGKRVLDVGCGGGILSESMARL---GADVTGIDASEENIEVARLHALESGLK--IDYRQTTAEELAAEHP 112 (233)
T ss_pred HHHHHhccCCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEcCCHHHHHHHHHHHHHcCCc--eEEEecCHHHhhhhcC
Confidence 45555555667889999999999999988875 368999999999999999999887763 6788888877653334
Q ss_pred CCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCC
Q 009708 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 468 (528)
Q Consensus 405 ~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~ 468 (528)
++||+|++.-... ..+ + ...+|+.+.++|+|||+++++++.-
T Consensus 113 ~~fD~Ii~~~~l~------~~~---------~-------~~~~l~~~~~~L~~gG~l~v~~~~~ 154 (233)
T PRK05134 113 GQFDVVTCMEMLE------HVP---------D-------PASFVRACAKLVKPGGLVFFSTLNR 154 (233)
T ss_pred CCccEEEEhhHhh------ccC---------C-------HHHHHHHHHHHcCCCcEEEEEecCC
Confidence 6899999743221 111 1 1246899999999999999887653
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.2e-08 Score=102.71 Aligned_cols=115 Identities=12% Similarity=0.123 Sum_probs=86.3
Q ss_pred CCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCC---CccEEEEcCccccccccCCCCCCEEEE
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQV---NSVIRTIHADLRTFADNSTVKCDKVLL 412 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~---~~~i~~~~~D~~~~~~~~~~~fD~Vl~ 412 (528)
+.+||++|||.|+.+..++... +..+++++|+++..++.+++++...+. ..+++++.+|+..+.....++||+|++
T Consensus 73 p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 4499999999999998887753 356899999999999999998865431 235888899998866544578999999
Q ss_pred cCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCC
Q 009708 413 DAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSID 469 (528)
Q Consensus 413 D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~ 469 (528)
|++.. .+. . ..+ ...++++.+.+.|+|||+++..+++..
T Consensus 152 D~~~~-~~~-----~-------~~l-----~~~ef~~~~~~~L~pgG~lv~~~~~~~ 190 (270)
T TIGR00417 152 DSTDP-VGP-----A-------ETL-----FTKEFYELLKKALNEDGIFVAQSESPW 190 (270)
T ss_pred eCCCC-CCc-----c-------cch-----hHHHHHHHHHHHhCCCcEEEEcCCCcc
Confidence 98742 111 0 010 124578899999999999998877643
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.4e-08 Score=98.40 Aligned_cols=109 Identities=12% Similarity=0.075 Sum_probs=77.6
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCC--------------CccEEEEcCccccc
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQV--------------NSVIRTIHADLRTF 399 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~--------------~~~i~~~~~D~~~~ 399 (528)
.++.+|||+|||.|..+.++|++ +..|+|+|+|+.+++.+.. .+|+ ...|+++++|+.++
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~---G~~V~gvD~S~~Ai~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~ 106 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ---GHRVLGVELSEIAVEQFFA---ENGLTPTVTQQGEFTRYRAGNIEIFCGDFFAL 106 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC---CCeEEEEeCCHHHHHHHHH---HcCCCcceeccccceeeecCceEEEEccCCCC
Confidence 46779999999999999999985 5689999999999997633 2222 12488899999887
Q ss_pred cccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCC
Q 009708 400 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 468 (528)
Q Consensus 400 ~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~ 468 (528)
.....++||.|+-- -| +..- .+.. ....+..+.++|||||++++.|-+.
T Consensus 107 ~~~~~~~fD~i~D~-~~-----~~~l-------~~~~-------R~~~~~~l~~lLkpgG~~ll~~~~~ 155 (213)
T TIGR03840 107 TAADLGPVDAVYDR-AA-----LIAL-------PEEM-------RQRYAAHLLALLPPGARQLLITLDY 155 (213)
T ss_pred CcccCCCcCEEEec-hh-----hccC-------CHHH-------HHHHHHHHHHHcCCCCeEEEEEEEc
Confidence 64323579988642 11 1111 1122 2335889999999999877776654
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=98.91 E-value=2e-08 Score=97.23 Aligned_cols=116 Identities=22% Similarity=0.316 Sum_probs=85.8
Q ss_pred HHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCC
Q 009708 327 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVK 406 (528)
Q Consensus 327 ~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~ 406 (528)
+...+...++.+|||+|||+|..+..++...+..++++++|+++..+..++++.. ...++.++++|+.+... ..++
T Consensus 31 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~~-~~~~ 106 (223)
T TIGR01934 31 AVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALPF-EDNS 106 (223)
T ss_pred HHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCCC-CCCc
Confidence 3444445578899999999999999999876433689999999999999998876 23347889999987653 2367
Q ss_pred CCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCC
Q 009708 407 CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 468 (528)
Q Consensus 407 fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~ 468 (528)
||+|++.-. +... .+. ..+++.+.++|+|||+++..+.+.
T Consensus 107 ~D~i~~~~~------~~~~---------~~~-------~~~l~~~~~~L~~gG~l~~~~~~~ 146 (223)
T TIGR01934 107 FDAVTIAFG------LRNV---------TDI-------QKALREMYRVLKPGGRLVILEFSK 146 (223)
T ss_pred EEEEEEeee------eCCc---------ccH-------HHHHHHHHHHcCCCcEEEEEEecC
Confidence 999986311 1111 111 246899999999999999876653
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.91 E-value=9.7e-09 Score=98.05 Aligned_cols=122 Identities=20% Similarity=0.210 Sum_probs=101.0
Q ss_pred cchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccc
Q 009708 321 DESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400 (528)
Q Consensus 321 d~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~ 400 (528)
+...+++..++..-...++||+|..+|.-++..|..++.+|+|+++|+++...+...+..+..|+..+|+++++++.+..
T Consensus 59 ~d~g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esL 138 (237)
T KOG1663|consen 59 PDKGQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESL 138 (237)
T ss_pred hHHHHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhH
Confidence 44456666666655677999999999999999999999999999999999999999999999999999999999988754
Q ss_pred cc-----CCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 401 DN-----STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 401 ~~-----~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
+. ..+.||.+|+|+--. .+....+++.+++|+||.|++-...
T Consensus 139 d~l~~~~~~~tfDfaFvDadK~-------------------------nY~~y~e~~l~Llr~GGvi~~DNvl 185 (237)
T KOG1663|consen 139 DELLADGESGTFDFAFVDADKD-------------------------NYSNYYERLLRLLRVGGVIVVDNVL 185 (237)
T ss_pred HHHHhcCCCCceeEEEEccchH-------------------------HHHHHHHHHHhhcccccEEEEeccc
Confidence 32 257899999996541 1225688899999999999987643
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=7.4e-09 Score=113.34 Aligned_cols=133 Identities=14% Similarity=0.139 Sum_probs=92.6
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHH--HHc---CC-CccEEEEcCccccccccCCCCC
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETA--KLH---QV-NSVIRTIHADLRTFADNSTVKC 407 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~--~~~---g~-~~~i~~~~~D~~~~~~~~~~~f 407 (528)
.+..+|||+|||.|..+..+++. ++..+|+++|+|++.++.++++. ... .. +.+++++++|+.++.....++|
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 34579999999999999988874 33369999999999999999953 221 12 2468999999998765555789
Q ss_pred CEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCc-hhhHHHHHHHHhhC
Q 009708 408 DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDP-EENEERVEAFLLRH 484 (528)
Q Consensus 408 D~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~-~Ene~~v~~~l~~~ 484 (528)
|+|++|+|... .|.. .. -...++++.+.+.|||||.++..+++... .+.-..+.+.+++.
T Consensus 375 DvIi~D~~~~~------~~~~---------~~--L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~ 435 (521)
T PRK03612 375 DVIIVDLPDPS------NPAL---------GK--LYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAA 435 (521)
T ss_pred CEEEEeCCCCC------Ccch---------hc--cchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHc
Confidence 99999987521 1100 00 11245788899999999999987776432 22223344445543
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.3e-08 Score=99.07 Aligned_cols=107 Identities=21% Similarity=0.222 Sum_probs=83.1
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDA 414 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~ 414 (528)
.+.+|||+|||+|..+..+++. ..+++++|+++.+++.+++++...+..+ +.+.+.|+.++......+||+|++..
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~D~i~~~~ 120 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL---GANVTGIDASEENIEVAKLHAKKDPLLK-IEYRCTSVEDLAEKGAKSFDVVTCME 120 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEeCCHHHhhcCCCCCccEEEehh
Confidence 4779999999999999988874 3579999999999999999999887643 78888998776543346899999742
Q ss_pred CCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 415 PCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 415 Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
.. . .......+|..+.+.|++||.++++++.
T Consensus 121 ~l------~----------------~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 151 (224)
T TIGR01983 121 VL------E----------------HVPDPQAFIRACAQLLKPGGILFFSTIN 151 (224)
T ss_pred HH------H----------------hCCCHHHHHHHHHHhcCCCcEEEEEecC
Confidence 21 0 0111235689999999999999988764
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.89 E-value=7e-09 Score=99.11 Aligned_cols=134 Identities=21% Similarity=0.281 Sum_probs=95.8
Q ss_pred eEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc-C-CCCCCEEEEcCC
Q 009708 338 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-S-TVKCDKVLLDAP 415 (528)
Q Consensus 338 ~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~-~-~~~fD~Vl~D~P 415 (528)
.+||+|||.|...+.+|.. .++..++|+|++..++..+.+.+.+.+++| +.++++|+..+... . ++++|.|.+.=|
T Consensus 20 l~lEIG~G~G~~l~~~A~~-~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~N-v~~~~~da~~~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKR-NPDINFIGIEIRKKRVAKALRKAEKRGLKN-VRFLRGDARELLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp EEEEET-TTSHHHHHHHHH-STTSEEEEEES-HHHHHHHHHHHHHHTTSS-EEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred eEEEecCCCCHHHHHHHHH-CCCCCEEEEecchHHHHHHHHHHHhhcccc-eEEEEccHHHHHhhcccCCchheEEEeCC
Confidence 8999999999999999998 567899999999999999999999999997 89999999885432 2 478999998876
Q ss_pred CCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHHHhh-CCCceEe
Q 009708 416 CSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLR-HPEFSID 490 (528)
Q Consensus 416 csg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~l~~-~~~~~~~ 490 (528)
.- +.+....+++. .+..+|+...+.|+|||.|.+.|=. ++--+.+...+.. ++.|+..
T Consensus 98 DP----WpK~rH~krRl----------~~~~fl~~~~~~L~~gG~l~~~TD~---~~y~~~~~~~~~~~~~~f~~~ 156 (195)
T PF02390_consen 98 DP----WPKKRHHKRRL----------VNPEFLELLARVLKPGGELYFATDV---EEYAEWMLEQFEESHPGFENI 156 (195)
T ss_dssp --------SGGGGGGST----------TSHHHHHHHHHHEEEEEEEEEEES----HHHHHHHHHHHHHHSTTEEEE
T ss_pred CC----Ccccchhhhhc----------CCchHHHHHHHHcCCCCEEEEEeCC---HHHHHHHHHHHHhcCcCeEEc
Confidence 61 22222222221 3456788899999999999987743 2222233344555 6888876
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.2e-08 Score=101.87 Aligned_cols=114 Identities=12% Similarity=0.165 Sum_probs=83.1
Q ss_pred CCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHH-----HHcCC-CccEEEEcCccccccccCCCCCCE
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETA-----KLHQV-NSVIRTIHADLRTFADNSTVKCDK 409 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~-----~~~g~-~~~i~~~~~D~~~~~~~~~~~fD~ 409 (528)
..+||++|||.|+.+..+++. .+..+|++||+++.+++.+++.. .+.++ +.+++++.+|+..+.....++||+
T Consensus 151 PkrVLIIGgGdG~tlrelLk~-~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDV 229 (374)
T PRK01581 151 PKRVLILGGGDGLALREVLKY-ETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDV 229 (374)
T ss_pred CCEEEEECCCHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccE
Confidence 359999999999988777764 44579999999999999999621 12222 357999999999877655678999
Q ss_pred EEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 410 VLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 410 Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
|++|.|-.. +. ....+ ...++++.+.+.|+|||++|....+
T Consensus 230 IIvDl~DP~-~~--------------~~~~L--yT~EFy~~~~~~LkPgGV~V~Qs~s 270 (374)
T PRK01581 230 IIIDFPDPA-TE--------------LLSTL--YTSELFARIATFLTEDGAFVCQSNS 270 (374)
T ss_pred EEEcCCCcc-cc--------------chhhh--hHHHHHHHHHHhcCCCcEEEEecCC
Confidence 999976411 00 00111 1256789999999999998865443
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.5e-10 Score=95.65 Aligned_cols=98 Identities=20% Similarity=0.210 Sum_probs=60.8
Q ss_pred EEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC-CCCCCEEEEcCCCCC
Q 009708 340 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS-TVKCDKVLLDAPCSG 418 (528)
Q Consensus 340 LDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~-~~~fD~Vl~D~Pcsg 418 (528)
||+|||+|..+..+++.. +..+++++|+|+.+++.+++++...+..+ ...+..+..+..... .++||.|++-
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~fD~V~~~----- 73 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGNDN-FERLRFDVLDLFDYDPPESFDLVVAS----- 73 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---CCC----SEEEEE-----
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCcc-eeEEEeecCChhhcccccccceehhh-----
Confidence 799999999999999885 56899999999999999999998887654 344444443333222 2589999963
Q ss_pred CccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEE
Q 009708 419 LGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVL 461 (528)
Q Consensus 419 ~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~L 461 (528)
+++..- +....+++++.++|||||.|
T Consensus 74 -~vl~~l----------------~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 74 -NVLHHL----------------EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp --TTS------------------S-HHHHHHHHTTT-TSS-EE
T ss_pred -hhHhhh----------------hhHHHHHHHHHHHcCCCCCC
Confidence 222221 11235699999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.4e-08 Score=110.33 Aligned_cols=119 Identities=16% Similarity=0.198 Sum_probs=85.2
Q ss_pred HHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccc-cc
Q 009708 324 AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA-DN 402 (528)
Q Consensus 324 s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~-~~ 402 (528)
...+...+.+.++.+|||+|||+|..+..+++. ..+|+|+|+++.+++.++. ..+...+++++++|+.... +.
T Consensus 26 ~~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~---~~~v~giD~s~~~l~~a~~---~~~~~~~i~~~~~d~~~~~~~~ 99 (475)
T PLN02336 26 RPEILSLLPPYEGKSVLELGAGIGRFTGELAKK---AGQVIALDFIESVIKKNES---INGHYKNVKFMCADVTSPDLNI 99 (475)
T ss_pred hhHHHhhcCccCCCEEEEeCCCcCHHHHHHHhh---CCEEEEEeCCHHHHHHHHH---HhccCCceEEEEecccccccCC
Confidence 445556666667889999999999999999986 3689999999999987654 2232234889999986422 12
Q ss_pred CCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCC
Q 009708 403 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 468 (528)
Q Consensus 403 ~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~ 468 (528)
..++||+|+++.+..- .+..++ .++++++.++|||||++++...++
T Consensus 100 ~~~~fD~I~~~~~l~~-------------l~~~~~-------~~~l~~~~r~Lk~gG~l~~~d~~~ 145 (475)
T PLN02336 100 SDGSVDLIFSNWLLMY-------------LSDKEV-------ENLAERMVKWLKVGGYIFFRESCF 145 (475)
T ss_pred CCCCEEEEehhhhHHh-------------CCHHHH-------HHHHHHHHHhcCCCeEEEEEeccC
Confidence 2468999998765421 111222 356999999999999998765443
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.1e-08 Score=102.37 Aligned_cols=114 Identities=18% Similarity=0.162 Sum_probs=78.7
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCC---CEE
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC---DKV 410 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~f---D~V 410 (528)
.++.+|||+|||+|.+|..+++.+....+++++|+|+.+++.+++++......-.+.++++|+.+..... ..+ +.+
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~-~~~~~~~~~ 140 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALP-PEPAAGRRL 140 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhh-cccccCCeE
Confidence 3567999999999999999998865357899999999999999998876432223777899987643221 222 333
Q ss_pred E--EcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCC
Q 009708 411 L--LDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 468 (528)
Q Consensus 411 l--~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~ 468 (528)
+ ++.+ .|. ..+.+. ..+|+.+.+.|+|||.+++..-..
T Consensus 141 ~~~~gs~---~~~----------~~~~e~-------~~~L~~i~~~L~pgG~~lig~d~~ 180 (301)
T TIGR03438 141 GFFPGST---IGN----------FTPEEA-------VAFLRRIRQLLGPGGGLLIGVDLV 180 (301)
T ss_pred EEEeccc---ccC----------CCHHHH-------HHHHHHHHHhcCCCCEEEEeccCC
Confidence 3 2222 122 122332 456999999999999998655443
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.1e-08 Score=103.87 Aligned_cols=94 Identities=15% Similarity=0.116 Sum_probs=78.7
Q ss_pred eecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccc
Q 009708 319 VQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 398 (528)
Q Consensus 319 ~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~ 398 (528)
++......++..+.+.++++|||+|||+|..|..+++. ..+|+|+|+|+.+++.+++++...+...+++++++|+..
T Consensus 20 ~d~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~---~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~ 96 (294)
T PTZ00338 20 KNPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL---AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALK 96 (294)
T ss_pred CCHHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh---CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhh
Confidence 33344566777778889999999999999999999875 468999999999999999999887754569999999987
Q ss_pred ccccCCCCCCEEEEcCCCCC
Q 009708 399 FADNSTVKCDKVLLDAPCSG 418 (528)
Q Consensus 399 ~~~~~~~~fD~Vl~D~Pcsg 418 (528)
... ..||.|+.|+|+..
T Consensus 97 ~~~---~~~d~VvaNlPY~I 113 (294)
T PTZ00338 97 TEF---PYFDVCVANVPYQI 113 (294)
T ss_pred hcc---cccCEEEecCCccc
Confidence 542 46899999999964
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=98.86 E-value=1e-08 Score=100.23 Aligned_cols=118 Identities=23% Similarity=0.318 Sum_probs=84.9
Q ss_pred eecchHHHHHHhcCC---CCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCc
Q 009708 319 VQDESAGLVVAVVDP---QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHAD 395 (528)
Q Consensus 319 ~Qd~~s~l~~~~l~~---~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D 395 (528)
+|...+..+...+.. ..+.+|||+|||+|..+..++... +..+++++|+++.+++.+++++. + ++.++.+|
T Consensus 15 ~q~~~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~----~-~~~~~~~d 88 (240)
T TIGR02072 15 IQREMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRF-PQAEFIALDISAGMLAQAKTKLS----E-NVQFICGD 88 (240)
T ss_pred HHHHHHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhC-CCCcEEEEeChHHHHHHHHHhcC----C-CCeEEecc
Confidence 455444444444332 334689999999999999999874 45689999999999998887654 2 37788999
Q ss_pred cccccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 396 LRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 396 ~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
+...+. ..++||+|+++-... |. .+ ...+|.++.++|+|||.+++++
T Consensus 89 ~~~~~~-~~~~fD~vi~~~~l~------------~~---~~-------~~~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 89 AEKLPL-EDSSFDLIVSNLALQ------------WC---DD-------LSQALSELARVLKPGGLLAFST 135 (240)
T ss_pred hhhCCC-CCCceeEEEEhhhhh------------hc---cC-------HHHHHHHHHHHcCCCcEEEEEe
Confidence 887653 246799999754331 10 01 1346899999999999999765
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.6e-08 Score=103.36 Aligned_cols=85 Identities=13% Similarity=0.092 Sum_probs=67.9
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHc-CCCccEEEEc-Cccccccc---cCCCCCCE
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLH-QVNSVIRTIH-ADLRTFAD---NSTVKCDK 409 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~-g~~~~i~~~~-~D~~~~~~---~~~~~fD~ 409 (528)
.+.+|||+|||+|+....++.... ..+++|+|+++.+++.+++|++.+ ++.++|+++. .|...+.. ...++||+
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~-~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDl 192 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEY-GWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDA 192 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEE
Confidence 457899999999999988887654 579999999999999999999999 8988788764 44433322 12468999
Q ss_pred EEEcCCCCCCc
Q 009708 410 VLLDAPCSGLG 420 (528)
Q Consensus 410 Vl~D~Pcsg~G 420 (528)
|+||||+..++
T Consensus 193 ivcNPPf~~s~ 203 (321)
T PRK11727 193 TLCNPPFHASA 203 (321)
T ss_pred EEeCCCCcCcc
Confidence 99999996543
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.1e-08 Score=99.71 Aligned_cols=114 Identities=21% Similarity=0.256 Sum_probs=94.3
Q ss_pred CeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC--CCCCCEEEEcC
Q 009708 337 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS--TVKCDKVLLDA 414 (528)
Q Consensus 337 ~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~--~~~fD~Vl~D~ 414 (528)
..+||+|||.|...+.+|+. .+...++|||+....+..+.+.+.+.|++| +.+++.|+..+.... .++.|.|.++=
T Consensus 50 pi~lEIGfG~G~~l~~~A~~-nP~~nfiGiEi~~~~v~~~l~k~~~~~l~N-lri~~~DA~~~l~~~~~~~sl~~I~i~F 127 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKK-NPEKNFLGIEIRVPGVAKALKKIKELGLKN-LRLLCGDAVEVLDYLIPDGSLDKIYINF 127 (227)
T ss_pred cEEEEECCCCCHHHHHHHHH-CCCCCEEEEEEehHHHHHHHHHHHHcCCCc-EEEEcCCHHHHHHhcCCCCCeeEEEEEC
Confidence 48999999999999999998 667789999999999999999999999985 999999999876654 34899999887
Q ss_pred CCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcC
Q 009708 415 PCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466 (528)
Q Consensus 415 Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTc 466 (528)
|. .|.+....-.++ +|..+|+...+.|||||.|.+.|=
T Consensus 128 PD------------PWpKkRH~KRRl--~~~~fl~~~a~~Lk~gG~l~~aTD 165 (227)
T COG0220 128 PD------------PWPKKRHHKRRL--TQPEFLKLYARKLKPGGVLHFATD 165 (227)
T ss_pred CC------------CCCCcccccccc--CCHHHHHHHHHHccCCCEEEEEec
Confidence 76 243333322333 567789999999999999998874
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.83 E-value=4.1e-08 Score=100.16 Aligned_cols=113 Identities=14% Similarity=0.209 Sum_probs=85.6
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcC--C-CccEEEEcCccccccccC-CCCCCEE
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQ--V-NSVIRTIHADLRTFADNS-TVKCDKV 410 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g--~-~~~i~~~~~D~~~~~~~~-~~~fD~V 410 (528)
...+||++|||.|+....+++. .+..+|+.||+++..++.+++.+...+ + +.+++++.+|+..+.... .++||+|
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 4569999999999999999876 445689999999999999999886542 3 347999999998876543 4689999
Q ss_pred EEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcC
Q 009708 411 LLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466 (528)
Q Consensus 411 l~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTc 466 (528)
++|.+-.. |. . .. -...++++.+.+.|+|||+++.-.-
T Consensus 170 i~D~~dp~-~~-----~-------~~-----L~t~ef~~~~~~~L~pgGvlv~q~~ 207 (308)
T PLN02366 170 IVDSSDPV-GP-----A-------QE-----LFEKPFFESVARALRPGGVVCTQAE 207 (308)
T ss_pred EEcCCCCC-Cc-----h-------hh-----hhHHHHHHHHHHhcCCCcEEEECcC
Confidence 99975421 11 0 01 1235678999999999999975433
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.5e-08 Score=104.50 Aligned_cols=103 Identities=17% Similarity=0.171 Sum_probs=78.2
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEc
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLD 413 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D 413 (528)
.++.+|||+|||+|..+..+++..+ ..+++++|+|+.+++.++++... . +++++.+|+.++.. ..+.||+|++.
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~-~~~VtgVD~S~~mL~~A~~k~~~---~-~i~~i~gD~e~lp~-~~~sFDvVIs~ 185 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPL---K-ECKIIEGDAEDLPF-PTDYADRYVSA 185 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhhhc---c-CCeEEeccHHhCCC-CCCceeEEEEc
Confidence 4678999999999999999988753 47899999999999999987642 2 37789999987543 23679999974
Q ss_pred CCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 414 APCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 414 ~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
.. +..-++ ...+|+++.++|||||++++.
T Consensus 186 ~~------L~~~~d----------------~~~~L~e~~rvLkPGG~LvIi 214 (340)
T PLN02490 186 GS------IEYWPD----------------PQRGIKEAYRVLKIGGKACLI 214 (340)
T ss_pred Ch------hhhCCC----------------HHHHHHHHHHhcCCCcEEEEE
Confidence 22 111111 123699999999999998765
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.82 E-value=7.9e-09 Score=108.69 Aligned_cols=116 Identities=17% Similarity=0.266 Sum_probs=87.3
Q ss_pred HHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC-C-
Q 009708 327 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS-T- 404 (528)
Q Consensus 327 ~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~-~- 404 (528)
+.++++...+..++|+|||+|.+++.+|+. ..+|+|||++++.+.-|+.|++.+|++| .+|+++.+.+..... .
T Consensus 375 i~e~~~l~~~k~llDv~CGTG~iglala~~---~~~ViGvEi~~~aV~dA~~nA~~NgisN-a~Fi~gqaE~~~~sl~~~ 450 (534)
T KOG2187|consen 375 IGEWAGLPADKTLLDVCCGTGTIGLALARG---VKRVIGVEISPDAVEDAEKNAQINGISN-ATFIVGQAEDLFPSLLTP 450 (534)
T ss_pred HHHHhCCCCCcEEEEEeecCCceehhhhcc---ccceeeeecChhhcchhhhcchhcCccc-eeeeecchhhccchhccc
Confidence 556677888899999999999999999975 5799999999999999999999999997 899999666543322 1
Q ss_pred --CCCC-EEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCch
Q 009708 405 --VKCD-KVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPE 471 (528)
Q Consensus 405 --~~fD-~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~ 471 (528)
..-+ ++++|||-.|.-. . +++ +.+..+.--+++|.+|..+..
T Consensus 451 ~~~~~~~v~iiDPpR~Glh~-------------~-----------~ik-~l~~~~~~~rlvyvSCn~~t~ 495 (534)
T KOG2187|consen 451 CCDSETLVAIIDPPRKGLHM-------------K-----------VIK-ALRAYKNPRRLVYVSCNPHTA 495 (534)
T ss_pred CCCCCceEEEECCCcccccH-------------H-----------HHH-HHHhccCccceEEEEcCHHHh
Confidence 2345 7889999865221 1 122 222223234799999998764
|
|
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.82 E-value=5.3e-08 Score=89.74 Aligned_cols=125 Identities=25% Similarity=0.337 Sum_probs=92.3
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcC-ccccccc-------cCCC
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA-DLRTFAD-------NSTV 405 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~-D~~~~~~-------~~~~ 405 (528)
.|+++|||+||+||.++..+-++.++.|.|.|||+-. -....+ ++++++ |+++... ....
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh-----------~~p~~G-a~~i~~~dvtdp~~~~ki~e~lp~r 135 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH-----------IEPPEG-ATIIQGNDVTDPETYRKIFEALPNR 135 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee-----------ccCCCC-cccccccccCCHHHHHHHHHhCCCC
Confidence 4689999999999999999999988999999999842 223333 455555 7665321 1246
Q ss_pred CCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHHHhhC
Q 009708 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRH 484 (528)
Q Consensus 406 ~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~l~~~ 484 (528)
..|+||.|.-.-.+|+ ...+-..+.++-...|.-|..+++|+|.+| |.+...+.+...+.-|..+
T Consensus 136 ~VdvVlSDMapnaTGv-----------r~~Dh~~~i~LC~s~l~~al~~~~p~g~fv---cK~w~g~e~~~l~r~l~~~ 200 (232)
T KOG4589|consen 136 PVDVVLSDMAPNATGV-----------RIRDHYRSIELCDSALLFALTLLIPNGSFV---CKLWDGSEEALLQRRLQAV 200 (232)
T ss_pred cccEEEeccCCCCcCc-----------chhhHHHHHHHHHHHHHHhhhhcCCCcEEE---EEEecCCchHHHHHHHHHH
Confidence 7999999976667776 234555666777778888999999999999 8877766665566555544
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.3e-08 Score=102.73 Aligned_cols=90 Identities=22% Similarity=0.276 Sum_probs=75.6
Q ss_pred HHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCC-
Q 009708 327 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV- 405 (528)
Q Consensus 327 ~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~- 405 (528)
+.+.+.+++|+.+||++||.||.|..+++.+++.++|+|+|+++.+++.+++++.. .++++++++|+.++......
T Consensus 11 vl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l~~~l~~~ 87 (296)
T PRK00050 11 VVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNLKEVLAEG 87 (296)
T ss_pred HHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHHHHHHHcC
Confidence 45567788999999999999999999999876678999999999999999988765 34699999999987543322
Q ss_pred --CCCEEEEcCCCCCC
Q 009708 406 --KCDKVLLDAPCSGL 419 (528)
Q Consensus 406 --~fD~Vl~D~Pcsg~ 419 (528)
+||.|++|.=+|+.
T Consensus 88 ~~~vDgIl~DLGvSs~ 103 (296)
T PRK00050 88 LGKVDGILLDLGVSSP 103 (296)
T ss_pred CCccCEEEECCCcccc
Confidence 79999999777664
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=5.4e-09 Score=99.48 Aligned_cols=115 Identities=20% Similarity=0.280 Sum_probs=87.2
Q ss_pred HHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCC-ccEEEEcCccccccccC-CC
Q 009708 328 VAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN-SVIRTIHADLRTFADNS-TV 405 (528)
Q Consensus 328 ~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~-~~i~~~~~D~~~~~~~~-~~ 405 (528)
+..+.++.|++|||.|.|-|..++.++++ +..+|+.+|.+|..++.+.-|-=..++. ..|+++.+|+.++.+.. .+
T Consensus 127 v~~V~~~~G~rVLDtC~GLGYtAi~a~~r--GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~ 204 (287)
T COG2521 127 VELVKVKRGERVLDTCTGLGYTAIEALER--GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDE 204 (287)
T ss_pred hheeccccCCEeeeeccCccHHHHHHHHc--CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCcc
Confidence 44566778999999999999999998875 4459999999999998877653222221 24789999999887655 56
Q ss_pred CCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEE
Q 009708 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463 (528)
Q Consensus 406 ~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvy 463 (528)
+||.|+-|||-.+... ++ .-.++-++.+++|||||.|+-
T Consensus 205 sfDaIiHDPPRfS~Ag-----------------eL--YseefY~El~RiLkrgGrlFH 243 (287)
T COG2521 205 SFDAIIHDPPRFSLAG-----------------EL--YSEEFYRELYRILKRGGRLFH 243 (287)
T ss_pred ccceEeeCCCccchhh-----------------hH--hHHHHHHHHHHHcCcCCcEEE
Confidence 7999999999843211 11 113567888999999999883
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.8e-08 Score=95.02 Aligned_cols=112 Identities=24% Similarity=0.330 Sum_probs=84.2
Q ss_pred cchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccc
Q 009708 321 DESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400 (528)
Q Consensus 321 d~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~ 400 (528)
.++..+++.+ .+.+-..|.|+|||||..|..++++.+ ...|+|+|-|+.|++.+++. +.+ ++|..+|+..+.
T Consensus 17 RPa~dLla~V-p~~~~~~v~DLGCGpGnsTelL~~RwP-~A~i~GiDsS~~Mla~Aa~r-----lp~-~~f~~aDl~~w~ 88 (257)
T COG4106 17 RPARDLLARV-PLERPRRVVDLGCGPGNSTELLARRWP-DAVITGIDSSPAMLAKAAQR-----LPD-ATFEEADLRTWK 88 (257)
T ss_pred CcHHHHHhhC-CccccceeeecCCCCCHHHHHHHHhCC-CCeEeeccCCHHHHHHHHHh-----CCC-CceecccHhhcC
Confidence 3444444443 445567999999999999999999964 78999999999999988654 343 789999999886
Q ss_pred ccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 401 DNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 401 ~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
+. ..+|+|+.|+-. .|..+ .-++|.+.+..|.|||.|..-
T Consensus 89 p~--~~~dllfaNAvl------------qWlpd----------H~~ll~rL~~~L~Pgg~LAVQ 128 (257)
T COG4106 89 PE--QPTDLLFANAVL------------QWLPD----------HPELLPRLVSQLAPGGVLAVQ 128 (257)
T ss_pred CC--Cccchhhhhhhh------------hhccc----------cHHHHHHHHHhhCCCceEEEE
Confidence 54 579999987654 22211 124588889999999999843
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.80 E-value=6.4e-07 Score=89.55 Aligned_cols=200 Identities=18% Similarity=0.143 Sum_probs=118.8
Q ss_pred ChHHHHHHHHHHhC-HHHHHHHHHhcCCCCCeEEE------EcCCCCC---CHHHHHHHHhhcCCCCCceecccCCceEE
Q 009708 229 HPVWMVRRWTKYLG-QEEAIKLMVWNNSDPSFSLR------ANSRKGV---TRADLVMQLNLLKLQVPHELSLHLDEFIR 298 (528)
Q Consensus 229 ~P~w~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~r------vn~~k~~---~~~~~~~~L~~~~~~~~~~~~~~~~~~~~ 298 (528)
+|..+.+.+...+| -....+.++.+....+..+- +...... ..+.+.+.|.. + .|+.+.|+.-..+.
T Consensus 17 l~~~~~~~~~~~~g~~~~w~~~l~~lp~~~~~~~~l~~~v~i~~~~~l~~~~~~~l~~~l~~--l-~PWRKGPf~l~gi~ 93 (315)
T PF08003_consen 17 LPAQLAAWLERRHGDLPRWQEALEQLPDLEPSSVDLSDSVTIGSASDLSAEQRQQLEQLLKA--L-MPWRKGPFSLFGIH 93 (315)
T ss_pred hHHHHHHHHHhccCCHHHHHHHHHHcCCCCCcEEecCCcEEeCCCCCCCHHHHHHHHHHHHh--h-CCcccCCcccCCEe
Confidence 56666555555566 34566666766654443332 2221111 24455566665 3 36666665433333
Q ss_pred eeCCccchhcccccccceeEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHH
Q 009708 299 VKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNE 378 (528)
Q Consensus 299 ~~~~~~~~~~~~~~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~ 378 (528)
+.+ ++. -|---..+...+..-.|.+|||+|||.|..+..|+.. +...|+|+|.+...+...+-
T Consensus 94 IDt--------EWr-------Sd~KW~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~--GA~~ViGiDP~~lf~~QF~~ 156 (315)
T PF08003_consen 94 IDT--------EWR-------SDWKWDRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGR--GAKSVIGIDPSPLFYLQFEA 156 (315)
T ss_pred ecc--------ccc-------ccchHHHHHhhhCCcCCCEEEEecCCCcHHHHHHhhc--CCCEEEEECCChHHHHHHHH
Confidence 322 110 0112233444454556899999999999999999875 45689999999888776655
Q ss_pred HHHHcCCCccEEEEcCccccccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCC
Q 009708 379 TAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPG 458 (528)
Q Consensus 379 n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpG 458 (528)
..+-.|.+..+..+..-+.+++. .+.||.||+ .|++=+.. ++ ...|.+....|++|
T Consensus 157 i~~~lg~~~~~~~lplgvE~Lp~--~~~FDtVF~------MGVLYHrr------~P----------l~~L~~Lk~~L~~g 212 (315)
T PF08003_consen 157 IKHFLGQDPPVFELPLGVEDLPN--LGAFDTVFS------MGVLYHRR------SP----------LDHLKQLKDSLRPG 212 (315)
T ss_pred HHHHhCCCccEEEcCcchhhccc--cCCcCEEEE------eeehhccC------CH----------HHHHHHHHHhhCCC
Confidence 55555655434333233344443 478999995 46653321 22 22478888999999
Q ss_pred CEEEEEcCCCCchh
Q 009708 459 GVLVYSTCSIDPEE 472 (528)
Q Consensus 459 G~LvysTcs~~~~E 472 (528)
|.||.-|-.+..++
T Consensus 213 GeLvLETlvi~g~~ 226 (315)
T PF08003_consen 213 GELVLETLVIDGDE 226 (315)
T ss_pred CEEEEEEeeecCCC
Confidence 99998887655443
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.9e-08 Score=95.68 Aligned_cols=110 Identities=12% Similarity=0.111 Sum_probs=76.7
Q ss_pred CCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCC--------------CccEEEEcCccc
Q 009708 332 DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQV--------------NSVIRTIHADLR 397 (528)
Q Consensus 332 ~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~--------------~~~i~~~~~D~~ 397 (528)
.+.++.+|||+|||.|..++++|++ +..|+|||+|+.+++.+.. ..++ ...|++.++|+.
T Consensus 34 ~~~~~~rvL~~gCG~G~da~~LA~~---G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~ 107 (218)
T PRK13255 34 ALPAGSRVLVPLCGKSLDMLWLAEQ---GHEVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDFF 107 (218)
T ss_pred CCCCCCeEEEeCCCChHhHHHHHhC---CCeEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEECccc
Confidence 3456779999999999999999985 5689999999999998642 2222 234888999999
Q ss_pred cccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 398 TFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 398 ~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
++.......||.|+-= -| +..- .++ ...+.+..+.++|+|||++++.|-.
T Consensus 108 ~l~~~~~~~fd~v~D~-~~-----~~~l-------~~~-------~R~~~~~~l~~lL~pgG~~~l~~~~ 157 (218)
T PRK13255 108 ALTAADLADVDAVYDR-AA-----LIAL-------PEE-------MRERYVQQLAALLPAGCRGLLVTLD 157 (218)
T ss_pred CCCcccCCCeeEEEeh-Hh-----HhhC-------CHH-------HHHHHHHHHHHHcCCCCeEEEEEEE
Confidence 8754433578888731 11 1111 111 2344688999999999975554433
|
|
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.7e-09 Score=98.99 Aligned_cols=109 Identities=28% Similarity=0.339 Sum_probs=83.2
Q ss_pred ccceeEeecc-hHHHHHHhc-CCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEE
Q 009708 313 KEGLCAVQDE-SAGLVVAVV-DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIR 390 (528)
Q Consensus 313 ~~G~~~~Qd~-~s~l~~~~l-~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~ 390 (528)
.+|+|.+--+ .+..++... ..-.-+.|+|.+||.||-|++.|.. ...|+++|++|-++..++.|++-+|++++|+
T Consensus 70 ~e~wfsvTpe~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~---~~~VisIdiDPikIa~AkhNaeiYGI~~rIt 146 (263)
T KOG2730|consen 70 REGWFSVTPEKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQ---GPYVIAIDIDPVKIACARHNAEVYGVPDRIT 146 (263)
T ss_pred ccceEEeccHHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHh---CCeEEEEeccHHHHHHHhccceeecCCceeE
Confidence 3666666432 233333221 1113468999999999999999876 4689999999999999999999999999999
Q ss_pred EEcCccccccccC---CCCCCEEEEcCCCCCCccccC
Q 009708 391 TIHADLRTFADNS---TVKCDKVLLDAPCSGLGVLSK 424 (528)
Q Consensus 391 ~~~~D~~~~~~~~---~~~fD~Vl~D~Pcsg~G~~~~ 424 (528)
++++|+.+..... ...+|.|+.-||++|.|..+.
T Consensus 147 FI~GD~ld~~~~lq~~K~~~~~vf~sppwggp~y~~~ 183 (263)
T KOG2730|consen 147 FICGDFLDLASKLKADKIKYDCVFLSPPWGGPSYLRA 183 (263)
T ss_pred EEechHHHHHHHHhhhhheeeeeecCCCCCCcchhhh
Confidence 9999998865432 345779999999999887543
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.1e-08 Score=98.81 Aligned_cols=96 Identities=17% Similarity=0.212 Sum_probs=71.9
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcCCC--cEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEE
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLSGQ--GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVL 411 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~~~--~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl 411 (528)
.++.+|||+|||+|..+..+++.++.. ..|+|+|+|+.+++.++++. .+ +.++.+|+.+++. ..++||+|+
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-----~~-~~~~~~d~~~lp~-~~~sfD~I~ 156 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-----PQ-VTFCVASSHRLPF-ADQSLDAII 156 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-----CC-CeEEEeecccCCC-cCCceeEEE
Confidence 355789999999999999998875432 37999999999999987642 33 6788899887653 246899998
Q ss_pred EcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 412 LDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 412 ~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
+.- . |. .+++..++|||||+|+..+
T Consensus 157 ~~~--------~--~~-------------------~~~e~~rvLkpgG~li~~~ 181 (272)
T PRK11088 157 RIY--------A--PC-------------------KAEELARVVKPGGIVITVT 181 (272)
T ss_pred Eec--------C--CC-------------------CHHHHHhhccCCCEEEEEe
Confidence 521 0 10 1456778999999999765
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=98.77 E-value=4.5e-08 Score=98.07 Aligned_cols=112 Identities=20% Similarity=0.197 Sum_probs=77.1
Q ss_pred CCCCeEEEeCCccch----HHHHHHHHcCC----CcEEEEEcCChHHHHHHHHHHH----HcC-----------------
Q 009708 334 QPGQSIVDCCAAPGG----KTLYMASCLSG----QGLVYAIDINKGRLRILNETAK----LHQ----------------- 384 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~----kt~~la~~~~~----~~~v~avD~s~~~l~~~~~n~~----~~g----------------- 384 (528)
.++.+|||+|||+|. .++.+++.... ..+|+|+|+|+.+++.|++.+- ..+
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 345699999999996 45555554432 4689999999999999988531 001
Q ss_pred -----CCccEEEEcCccccccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCC
Q 009708 385 -----VNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459 (528)
Q Consensus 385 -----~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG 459 (528)
+.+.|++.++|+.+... ..++||+|+| .. ++.. .+ ...+.++++...+.|+|||
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~-~~~~fD~I~c----rn--vl~y-------f~-------~~~~~~~l~~l~~~L~pGG 236 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESP-PLGDFDLIFC----RN--VLIY-------FD-------EPTQRKLLNRFAEALKPGG 236 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCC-ccCCCCEEEe----ch--hHHh-------CC-------HHHHHHHHHHHHHHhCCCe
Confidence 22358889999987653 2468999996 11 1110 11 1235567999999999999
Q ss_pred EEEEEcC
Q 009708 460 VLVYSTC 466 (528)
Q Consensus 460 ~LvysTc 466 (528)
+|+....
T Consensus 237 ~L~lg~~ 243 (264)
T smart00138 237 YLFLGHS 243 (264)
T ss_pred EEEEECc
Confidence 9997543
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.1e-07 Score=107.62 Aligned_cols=89 Identities=16% Similarity=0.142 Sum_probs=72.4
Q ss_pred HhcCC-CCCCeEEEeCCccchHHHHHHHHcC-----------------------------------------CCcEEEEE
Q 009708 329 AVVDP-QPGQSIVDCCAAPGGKTLYMASCLS-----------------------------------------GQGLVYAI 366 (528)
Q Consensus 329 ~~l~~-~~g~~VLDl~aG~G~kt~~la~~~~-----------------------------------------~~~~v~av 366 (528)
.+... .++..++|.+||+|++.+.+|.... ...+|+|+
T Consensus 183 ~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~ 262 (702)
T PRK11783 183 LRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGS 262 (702)
T ss_pred HHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEE
Confidence 33343 5678999999999999998876311 12369999
Q ss_pred cCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC-CCCCCEEEEcCCCC
Q 009708 367 DINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS-TVKCDKVLLDAPCS 417 (528)
Q Consensus 367 D~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~-~~~fD~Vl~D~Pcs 417 (528)
|+++.+++.+++|++.+|+.+.+++.++|+.++.... .++||+|++|||+.
T Consensus 263 Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg 314 (702)
T PRK11783 263 DIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYG 314 (702)
T ss_pred ECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCc
Confidence 9999999999999999999888999999998875432 25699999999993
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.4e-08 Score=95.85 Aligned_cols=107 Identities=28% Similarity=0.245 Sum_probs=69.1
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 405 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~~ 405 (528)
.+.+|||+||+|||++..++++.+..++|+|+|+.+. ...++ +..+++|.++.... ...
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~~~-~~~i~~d~~~~~~~~~i~~~~~~~~~ 90 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPLQN-VSFIQGDITNPENIKDIRKLLPESGE 90 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS-TT-EEBTTGGGEEEEHSHHGGGSHGTTTC
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccccc-eeeeecccchhhHHHhhhhhcccccc
Confidence 4589999999999999999987545689999999877 22233 67778887653211 125
Q ss_pred CCCEEEEcC--CCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcC
Q 009708 406 KCDKVLLDA--PCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466 (528)
Q Consensus 406 ~fD~Vl~D~--Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTc 466 (528)
+||+|++|. +++|... .+ -.....+....|.-|..+|++||.+|.-+.
T Consensus 91 ~~dlv~~D~~~~~~g~~~----------~d---~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~ 140 (181)
T PF01728_consen 91 KFDLVLSDMAPNVSGDRN----------ID---EFISIRLILSQLLLALELLKPGGTFVIKVF 140 (181)
T ss_dssp SESEEEE-------SSHH----------SS---HHHHHHHHHHHHHHHHHHHCTTEEEEEEES
T ss_pred CcceeccccccCCCCchh----------hH---HHHHHHHHHHHHHHHHhhhcCCCEEEEEec
Confidence 899999997 4433211 11 222234445557788899999999985443
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.6e-08 Score=98.44 Aligned_cols=90 Identities=18% Similarity=0.261 Sum_probs=74.2
Q ss_pred eecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccc
Q 009708 319 VQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 398 (528)
Q Consensus 319 ~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~ 398 (528)
+.......++..++..++++|||+|||+|..|..+++. ..+|+++|+++.+++.+++++.. .. +++++++|+..
T Consensus 13 ~d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~---~~~v~~vEid~~~~~~l~~~~~~--~~-~v~ii~~D~~~ 86 (258)
T PRK14896 13 IDDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR---AKKVYAIELDPRLAEFLRDDEIA--AG-NVEIIEGDALK 86 (258)
T ss_pred CCHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHhcc--CC-CEEEEEecccc
Confidence 33444566777778888999999999999999999986 36899999999999999988764 33 48999999987
Q ss_pred ccccCCCCCCEEEEcCCCC
Q 009708 399 FADNSTVKCDKVLLDAPCS 417 (528)
Q Consensus 399 ~~~~~~~~fD~Vl~D~Pcs 417 (528)
+.. ..||.|++|+|+.
T Consensus 87 ~~~---~~~d~Vv~NlPy~ 102 (258)
T PRK14896 87 VDL---PEFNKVVSNLPYQ 102 (258)
T ss_pred CCc---hhceEEEEcCCcc
Confidence 652 3589999999984
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=98.74 E-value=9.3e-08 Score=105.11 Aligned_cols=170 Identities=14% Similarity=0.126 Sum_probs=104.5
Q ss_pred cceeEeecchHHHHHHhcCCC-------CCCeEEEeCCccchHHHHHHHHcCC-------CcEEEEEcCChHHHHHHHHH
Q 009708 314 EGLCAVQDESAGLVVAVVDPQ-------PGQSIVDCCAAPGGKTLYMASCLSG-------QGLVYAIDINKGRLRILNET 379 (528)
Q Consensus 314 ~G~~~~Qd~~s~l~~~~l~~~-------~g~~VLDl~aG~G~kt~~la~~~~~-------~~~v~avD~s~~~l~~~~~n 379 (528)
.|.|+....-+.+++..+... .+.+|||.|||+|++.+.++..+.. ...++|+|+++..+..++.|
T Consensus 3 ~GqfyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~ 82 (524)
T TIGR02987 3 YGTFFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKL 82 (524)
T ss_pred CcccCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHH
Confidence 467777666677777655322 2358999999999999999887631 24789999999999999999
Q ss_pred HHHcCCCccEEEEcCcccccc----ccCCCCCCEEEEcCCCCCCccccCCch-------hhccCCH-------HHHH---
Q 009708 380 AKLHQVNSVIRTIHADLRTFA----DNSTVKCDKVLLDAPCSGLGVLSKRAD-------LRWNRRL-------EDME--- 438 (528)
Q Consensus 380 ~~~~g~~~~i~~~~~D~~~~~----~~~~~~fD~Vl~D~Pcsg~G~~~~~pd-------~~~~~~~-------~~~~--- 438 (528)
+...+.- .+.+.+.|..... ....+.||+|+.|||+.........-. ..+.... ..+.
T Consensus 83 l~~~~~~-~~~i~~~d~l~~~~~~~~~~~~~fD~IIgNPPy~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (524)
T TIGR02987 83 LGEFALL-EINVINFNSLSYVLLNIESYLDLFDIVITNPPYGRLKPDKKELTNIETLEYEKYIDFLKEFDDLLSRVLPYS 161 (524)
T ss_pred HhhcCCC-CceeeecccccccccccccccCcccEEEeCCCccccCcchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcchh
Confidence 9887622 2455556544321 112357999999999965432111000 0000000 0000
Q ss_pred -------HHHHHHHHH-HHHHhccCcCCCEEEEEcCC-CCchhhHHHHHHHHhhC
Q 009708 439 -------ELKILQDEL-LDAASLLVKPGGVLVYSTCS-IDPEENEERVEAFLLRH 484 (528)
Q Consensus 439 -------~l~~~q~~l-L~~a~~~LkpGG~LvysTcs-~~~~Ene~~v~~~l~~~ 484 (528)
.....+..+ ++.+.++|++||++.+.+-+ +........+..++.++
T Consensus 162 ~~~~~~~g~~~~y~~~f~~~~~~lL~~~G~~~~I~P~s~l~~~~~~~lR~~ll~~ 216 (524)
T TIGR02987 162 DPIRKYAGVGTEYSRVFEEISLEIANKNGYVSIISPASWLGDKTGENLREYIFNN 216 (524)
T ss_pred hhhcccCCcccHHHHHHHHHHHHhcCCCCEEEEEEChHHhcCccHHHHHHHHHhC
Confidence 011233444 47799999999999876654 33334444566666544
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.5e-08 Score=99.29 Aligned_cols=89 Identities=21% Similarity=0.279 Sum_probs=71.1
Q ss_pred cchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccc
Q 009708 321 DESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400 (528)
Q Consensus 321 d~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~ 400 (528)
......++..+++.++++|||+|||+|..|..+++. ..+|+|+|+++.+++.+++++.. + +++++++|+..+.
T Consensus 28 ~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~---~~~v~avE~d~~~~~~~~~~~~~---~-~v~~i~~D~~~~~ 100 (272)
T PRK00274 28 ENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLER---AAKVTAVEIDRDLAPILAETFAE---D-NLTIIEGDALKVD 100 (272)
T ss_pred HHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHh---CCcEEEEECCHHHHHHHHHhhcc---C-ceEEEEChhhcCC
Confidence 334455666778888999999999999999999987 24899999999999999987642 3 4899999998865
Q ss_pred ccCCCCCCEEEEcCCCC
Q 009708 401 DNSTVKCDKVLLDAPCS 417 (528)
Q Consensus 401 ~~~~~~fD~Vl~D~Pcs 417 (528)
... ..+|.|+.|+|+.
T Consensus 101 ~~~-~~~~~vv~NlPY~ 116 (272)
T PRK00274 101 LSE-LQPLKVVANLPYN 116 (272)
T ss_pred HHH-cCcceEEEeCCcc
Confidence 321 1159999999984
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=8.1e-08 Score=93.81 Aligned_cols=91 Identities=21% Similarity=0.160 Sum_probs=78.4
Q ss_pred HHHHHHhcCCCCCC--eEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHc------CC--CccEEEEc
Q 009708 324 AGLVVAVVDPQPGQ--SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLH------QV--NSVIRTIH 393 (528)
Q Consensus 324 s~l~~~~l~~~~g~--~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~------g~--~~~i~~~~ 393 (528)
.+.++.++++++|. +|||++||.|..++.++.+ +++|+++|.++.....+++++++. +. ..++++++
T Consensus 75 ~~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~---G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~ 151 (250)
T PRK10742 75 GEAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIH 151 (250)
T ss_pred ccHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEe
Confidence 46778888888888 8999999999999999987 567999999999999999999996 32 24589999
Q ss_pred CccccccccCCCCCCEEEEcCCCC
Q 009708 394 ADLRTFADNSTVKCDKVLLDAPCS 417 (528)
Q Consensus 394 ~D~~~~~~~~~~~fD~Vl~D~Pcs 417 (528)
+|...+.......||+|++|||+-
T Consensus 152 ~da~~~L~~~~~~fDVVYlDPMfp 175 (250)
T PRK10742 152 ASSLTALTDITPRPQVVYLDPMFP 175 (250)
T ss_pred CcHHHHHhhCCCCCcEEEECCCCC
Confidence 999988765556799999999993
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.69 E-value=6e-07 Score=92.68 Aligned_cols=114 Identities=13% Similarity=0.164 Sum_probs=84.3
Q ss_pred CCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcC---CCccEEEEcCccccccccCCCCCCEEEE
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQ---VNSVIRTIHADLRTFADNSTVKCDKVLL 412 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g---~~~~i~~~~~D~~~~~~~~~~~fD~Vl~ 412 (528)
..+||.+|+|.|+.+..+++. .+..+|++||+++..++.+++.+...+ -+.+++++.+|+..+.....++||+|++
T Consensus 104 pk~VLiiGgG~G~~~re~l~~-~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 104 PKTVFIMGGGEGSTAREVLRH-KTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCEEEEECCCchHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 358999999999999888875 335689999999999999999876432 1357999999999987655678999999
Q ss_pred cCCCCC-CccccCCchhhccCCHHHHHHHHHHHHHHHH-HHhccCcCCCEEEEEcCC
Q 009708 413 DAPCSG-LGVLSKRADLRWNRRLEDMEELKILQDELLD-AASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 413 D~Pcsg-~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~-~a~~~LkpGG~LvysTcs 467 (528)
|.+-.. .|. + .. -...++++ .+.+.|+|||+++.-..+
T Consensus 183 D~~dp~~~~~----~--------~~-----Lyt~eF~~~~~~~~L~p~Gvlv~q~~s 222 (336)
T PLN02823 183 DLADPVEGGP----C--------YQ-----LYTKSFYERIVKPKLNPGGIFVTQAGP 222 (336)
T ss_pred cCCCccccCc----c--------hh-----hccHHHHHHHHHHhcCCCcEEEEeccC
Confidence 964211 111 0 00 11235676 788999999998865433
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.1e-07 Score=85.56 Aligned_cols=138 Identities=20% Similarity=0.297 Sum_probs=99.9
Q ss_pred CCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAP 415 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~P 415 (528)
...++++|||+|..+.++++.+.+.....+.|++|.+++...+.++.+++. +++++.|+..-... ++.|+++.|||
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~--~~~V~tdl~~~l~~--~~VDvLvfNPP 119 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVH--IDVVRTDLLSGLRN--ESVDVLVFNPP 119 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCc--cceeehhHHhhhcc--CCccEEEECCC
Confidence 458999999999999999999888888999999999999999999999876 78899998776544 78999999999
Q ss_pred CCCC--ccc-cCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHHHhhC
Q 009708 416 CSGL--GVL-SKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRH 484 (528)
Q Consensus 416 csg~--G~~-~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~l~~~ 484 (528)
+--+ +-+ ...-+..|.-. ......-.+++.+.-.+|.|.|.++..+|.-+. .+.+-.+++..
T Consensus 120 YVpt~~~~i~~~~i~~a~aGG----~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~---p~ei~k~l~~~ 184 (209)
T KOG3191|consen 120 YVPTSDEEIGDEGIASAWAGG----KDGREVTDRLLPQVPDILSPRGVFYLVALRANK---PKEILKILEKK 184 (209)
T ss_pred cCcCCcccchhHHHHHHHhcC----cchHHHHHHHHhhhhhhcCcCceEEeeehhhcC---HHHHHHHHhhc
Confidence 8221 100 00111123211 122233456788899999999998887775332 23344566654
|
|
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.67 E-value=7.9e-08 Score=104.31 Aligned_cols=170 Identities=23% Similarity=0.260 Sum_probs=116.9
Q ss_pred cceeEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCC---CcEEEEEcCChHHHHHHHHHHHHcCCCccEE
Q 009708 314 EGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSG---QGLVYAIDINKGRLRILNETAKLHQVNSVIR 390 (528)
Q Consensus 314 ~G~~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~---~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~ 390 (528)
.|.|+.....+.+++.++.+.+..+|+|.|||+|+..+..+..+.. ...++|.|+++.....++.|+-.+|+...+.
T Consensus 165 ~GEfyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~ 244 (489)
T COG0286 165 AGEFYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDAN 244 (489)
T ss_pred CCccCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCcccc
Confidence 3888888888999999999988899999999999999988888753 3679999999999999999999999874355
Q ss_pred EEcCcccccccc----CCCCCCEEEEcCCCCCCccccCC-c-hhhccCCHHHHHHHH-HHHHHHHHHHhccCcCCCEEE-
Q 009708 391 TIHADLRTFADN----STVKCDKVLLDAPCSGLGVLSKR-A-DLRWNRRLEDMEELK-ILQDELLDAASLLVKPGGVLV- 462 (528)
Q Consensus 391 ~~~~D~~~~~~~----~~~~fD~Vl~D~Pcsg~G~~~~~-p-d~~~~~~~~~~~~l~-~~q~~lL~~a~~~LkpGG~Lv- 462 (528)
..++|...-+.. ...+||.|+.+||.++.+...-. . +-.|+.......... .-...++.+....|+|||+..
T Consensus 245 i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aai 324 (489)
T COG0286 245 IRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAI 324 (489)
T ss_pred ccccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEE
Confidence 666766544322 24679999999999866654321 1 001100000000000 001346888999999987533
Q ss_pred -EEcCCCCchhhHHHHHHHHhh
Q 009708 463 -YSTCSIDPEENEERVEAFLLR 483 (528)
Q Consensus 463 -ysTcs~~~~Ene~~v~~~l~~ 483 (528)
...-.+...-++..+...+-.
T Consensus 325 vl~~gvlfr~~~e~~IR~~l~~ 346 (489)
T COG0286 325 VLPDGVLFRGGAEKDIRKDLLE 346 (489)
T ss_pred EecCCcCcCCCchHHHHHHHHh
Confidence 333334444467677766655
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.2e-07 Score=90.68 Aligned_cols=73 Identities=22% Similarity=0.155 Sum_probs=61.0
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEc
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLD 413 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D 413 (528)
.++.+|||+|||+|..+..+++. ...|+++|+++.+++.+++++...+..+++.+..+|+.. ..+.||+|++.
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~---~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~----~~~~fD~v~~~ 134 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARR---GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES----LLGRFDTVVCL 134 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh----ccCCcCEEEEc
Confidence 46779999999999999999875 357999999999999999999988875568899998432 13679999863
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=98.64 E-value=4.2e-08 Score=89.73 Aligned_cols=108 Identities=24% Similarity=0.280 Sum_probs=73.7
Q ss_pred HHHHHHhcC-CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc
Q 009708 324 AGLVVAVVD-PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 402 (528)
Q Consensus 324 s~l~~~~l~-~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~ 402 (528)
+.++..+.. ..++.+|||+|||.|..+..++.. ..+++++|+++.+++. .+ +.....+..... .
T Consensus 10 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~~~g~D~~~~~~~~----------~~-~~~~~~~~~~~~-~ 74 (161)
T PF13489_consen 10 ADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKR---GFEVTGVDISPQMIEK----------RN-VVFDNFDAQDPP-F 74 (161)
T ss_dssp HHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHT---TSEEEEEESSHHHHHH----------TT-SEEEEEECHTHH-C
T ss_pred HHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHhh----------hh-hhhhhhhhhhhh-c
Confidence 445555554 466789999999999999999765 3499999999999987 11 222222222222 1
Q ss_pred CCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCC
Q 009708 403 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 468 (528)
Q Consensus 403 ~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~ 468 (528)
..++||+|++. .++..-++ ...+|+.+.++|||||++++++-..
T Consensus 75 ~~~~fD~i~~~------~~l~~~~d----------------~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 75 PDGSFDLIICN------DVLEHLPD----------------PEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp HSSSEEEEEEE------SSGGGSSH----------------HHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred cccchhhHhhH------HHHhhccc----------------HHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 24789999973 22333221 2356999999999999999877543
|
... |
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.1e-07 Score=90.14 Aligned_cols=78 Identities=14% Similarity=0.078 Sum_probs=56.4
Q ss_pred cCCCCCCeEEEeCCccchHHHHHHHHcC---CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCC
Q 009708 331 VDPQPGQSIVDCCAAPGGKTLYMASCLS---GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC 407 (528)
Q Consensus 331 l~~~~g~~VLDl~aG~G~kt~~la~~~~---~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~f 407 (528)
+...++.+|||+|||+|..+..++.... ...+|+|+|+++.+++.++++....++ ++...|+..+.. ..++|
T Consensus 56 l~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~----~~~~~~~~~l~~-~~~~f 130 (232)
T PRK06202 56 LSADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGV----TFRQAVSDELVA-EGERF 130 (232)
T ss_pred cCCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCC----eEEEEecccccc-cCCCc
Confidence 3445677999999999999998887542 235899999999999999887655443 344444433332 24689
Q ss_pred CEEEEc
Q 009708 408 DKVLLD 413 (528)
Q Consensus 408 D~Vl~D 413 (528)
|+|++.
T Consensus 131 D~V~~~ 136 (232)
T PRK06202 131 DVVTSN 136 (232)
T ss_pred cEEEEC
Confidence 999974
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.6e-07 Score=89.00 Aligned_cols=128 Identities=15% Similarity=0.122 Sum_probs=82.8
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEE
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 412 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~ 412 (528)
..++.+|||+|||+|..+..++..++ ..+++|+|+|+.+++.++++. .+ +.++++|+.. + ...++||+|++
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~-~~~v~giDiS~~~l~~A~~~~-----~~-~~~~~~d~~~-~-~~~~sfD~V~~ 111 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLP-FKHIYGVEINEYAVEKAKAYL-----PN-INIIQGSLFD-P-FKDNFFDLVLT 111 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCC-CCeEEEEECCHHHHHHHHhhC-----CC-CcEEEeeccC-C-CCCCCEEEEEE
Confidence 44677999999999999999988653 579999999999999998764 22 5677888876 2 23468999996
Q ss_pred cCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC--------CCchhh----HHHHHHH
Q 009708 413 DAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS--------IDPEEN----EERVEAF 480 (528)
Q Consensus 413 D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs--------~~~~En----e~~v~~~ 480 (528)
. +++.+ .++.++ .++++++.+.+ ++.++.+.+- +...+. -+-..++
T Consensus 112 ~------~vL~h-------l~p~~~-------~~~l~el~r~~--~~~v~i~e~~~~~~~~~~y~~~~~~~~~~d~~~~~ 169 (204)
T TIGR03587 112 K------GVLIH-------INPDNL-------PTAYRELYRCS--NRYILIAEYYNPSPVEISYRGNSGRLWKRDFAGEM 169 (204)
T ss_pred C------Chhhh-------CCHHHH-------HHHHHHHHhhc--CcEEEEEEeeCCCceeeeeeCCcchhhhhhHHHHH
Confidence 3 22211 122222 33477777776 4566654431 111111 1123567
Q ss_pred HhhCCCceEec
Q 009708 481 LLRHPEFSIDP 491 (528)
Q Consensus 481 l~~~~~~~~~~ 491 (528)
++..|+.++..
T Consensus 170 ~~~~~~l~~~~ 180 (204)
T TIGR03587 170 MDRYPDLKLVD 180 (204)
T ss_pred HHhCCcceeee
Confidence 77778777654
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >KOG2671 consensus Putative RNA methylase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.4e-08 Score=98.78 Aligned_cols=161 Identities=23% Similarity=0.233 Sum_probs=111.5
Q ss_pred hHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHH-------HHHHHHHHcCCCc-cEEEEcC
Q 009708 323 SAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLR-------ILNETAKLHQVNS-VIRTIHA 394 (528)
Q Consensus 323 ~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~-------~~~~n~~~~g~~~-~i~~~~~ 394 (528)
-|.+.+....+.||+.|.|-+.|+|++...+|.. ++.|+|-||+-.++. ..+.|++++|... -+.++.+
T Consensus 196 LSli~AN~Amv~pGdivyDPFVGTGslLvsaa~F---Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~ 272 (421)
T KOG2671|consen 196 LSLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHF---GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTA 272 (421)
T ss_pred HHHHHhhhhccCCCCEEecCccccCceeeehhhh---cceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeee
Confidence 3566677777899999999999999999888875 589999999988876 4678999999653 2467788
Q ss_pred ccccccccCCCCCCEEEEcCCCCCC-c--cccCCchhhcc--------CCHHHHHHHHHHHHHHHHHHhccCcCCCEEEE
Q 009708 395 DLRTFADNSTVKCDKVLLDAPCSGL-G--VLSKRADLRWN--------RRLEDMEELKILQDELLDAASLLVKPGGVLVY 463 (528)
Q Consensus 395 D~~~~~~~~~~~fD~Vl~D~Pcsg~-G--~~~~~pd~~~~--------~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvy 463 (528)
|..+.+......||.|+||||+.-- | .+.++..++-. ........+..+..++|.-+.+.|..||+||
T Consensus 273 D~sn~~~rsn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv- 351 (421)
T KOG2671|consen 273 DFSNPPLRSNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLV- 351 (421)
T ss_pred cccCcchhhcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEE-
Confidence 9887665556789999999999311 1 01111111100 0112334566677789999999999999999
Q ss_pred EcCCCCchhhHHHHHHHHhhCCCceEe
Q 009708 464 STCSIDPEENEERVEAFLLRHPEFSID 490 (528)
Q Consensus 464 sTcs~~~~Ene~~v~~~l~~~~~~~~~ 490 (528)
|-+ |.-+|+....-+-.||.+.+.
T Consensus 352 --~w~-p~~~e~~~~~~~P~h~~lsl~ 375 (421)
T KOG2671|consen 352 --FWL-PTITEEYGEDDIPSHPYLSLI 375 (421)
T ss_pred --Eec-CchhhccCcccCCCCcchhhh
Confidence 332 344444444455566665544
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.56 E-value=4.7e-07 Score=85.77 Aligned_cols=141 Identities=16% Similarity=0.079 Sum_probs=94.9
Q ss_pred ceeEeecchHHHHHHhcCCCC--CCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEE
Q 009708 315 GLCAVQDESAGLVVAVVDPQP--GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTI 392 (528)
Q Consensus 315 G~~~~Qd~~s~l~~~~l~~~~--g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~ 392 (528)
-...+|-+-+.-..++++..+ ..-|||+|||+|..+..+.+. +-..+++|||+.|++.+.+. ... + .++
T Consensus 28 ri~~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~---Gh~wiGvDiSpsML~~a~~~--e~e--g--dli 98 (270)
T KOG1541|consen 28 RIVLIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDS---GHQWIGVDISPSMLEQAVER--ELE--G--DLI 98 (270)
T ss_pred eeeeehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccC---CceEEeecCCHHHHHHHHHh--hhh--c--Cee
Confidence 346788888877788877665 567999999999988877653 35689999999999999872 221 1 356
Q ss_pred cCccccccccCCCCCCEEEEc----CCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCC
Q 009708 393 HADLRTFADNSTVKCDKVLLD----APCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 468 (528)
Q Consensus 393 ~~D~~~~~~~~~~~fD~Vl~D----~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~ 468 (528)
.+|+-.-.+..++.||.+|+= -+|...-. .++| ......++...+..|++|++.|+-
T Consensus 99 l~DMG~GlpfrpGtFDg~ISISAvQWLcnA~~s-~~~P--------------~~Rl~~FF~tLy~~l~rg~raV~Q---- 159 (270)
T KOG1541|consen 99 LCDMGEGLPFRPGTFDGVISISAVQWLCNADKS-LHVP--------------KKRLLRFFGTLYSCLKRGARAVLQ---- 159 (270)
T ss_pred eeecCCCCCCCCCccceEEEeeeeeeecccCcc-ccCh--------------HHHHHHHhhhhhhhhccCceeEEE----
Confidence 677765444457899998741 22211100 0111 111234677889999999999852
Q ss_pred CchhhHHHHHHHHhh
Q 009708 469 DPEENEERVEAFLLR 483 (528)
Q Consensus 469 ~~~Ene~~v~~~l~~ 483 (528)
+..||+++++-.+..
T Consensus 160 fYpen~~q~d~i~~~ 174 (270)
T KOG1541|consen 160 FYPENEAQIDMIMQQ 174 (270)
T ss_pred ecccchHHHHHHHHH
Confidence 345788887766654
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=98.56 E-value=6e-07 Score=85.89 Aligned_cols=114 Identities=25% Similarity=0.334 Sum_probs=82.5
Q ss_pred HHHHHHh------cCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccc
Q 009708 324 AGLVVAV------VDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 397 (528)
Q Consensus 324 s~l~~~~------l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~ 397 (528)
|.|.+.+ +.+.+|.+||-+|+++|....|++...+..|.|+|||.++...+.+-..+++- +| |-.+.+|++
T Consensus 56 SKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R--~N-IiPIl~DAr 132 (229)
T PF01269_consen 56 SKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR--PN-IIPILEDAR 132 (229)
T ss_dssp -HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS--TT-EEEEES-TT
T ss_pred hHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC--Cc-eeeeeccCC
Confidence 5555544 34678999999999999999999999988999999999999988887776663 34 778889998
Q ss_pred cccccC--CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHH-HHHHHhccCcCCCEEEEEc
Q 009708 398 TFADNS--TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDE-LLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 398 ~~~~~~--~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~-lL~~a~~~LkpGG~LvysT 465 (528)
...... -+.+|.|++|..-.. |.+ ++.++..+||+||.++.+-
T Consensus 133 ~P~~Y~~lv~~VDvI~~DVaQp~-------------------------Qa~I~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 133 HPEKYRMLVEMVDVIFQDVAQPD-------------------------QARIAALNARHFLKPGGHLIISI 178 (229)
T ss_dssp SGGGGTTTS--EEEEEEE-SSTT-------------------------HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ChHHhhcccccccEEEecCCChH-------------------------HHHHHHHHHHhhccCCcEEEEEE
Confidence 754432 458999999977521 222 4678889999999988653
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.56 E-value=7.9e-08 Score=85.08 Aligned_cols=78 Identities=18% Similarity=0.285 Sum_probs=66.8
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEc
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLD 413 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D 413 (528)
-.|.+++|+|||.|..++..+ |.+...|+|+|++|.+++...+|++...+. +.++++|..++... .+.||.+++|
T Consensus 47 iEgkkl~DLgcgcGmLs~a~s--m~~~e~vlGfDIdpeALEIf~rNaeEfEvq--idlLqcdildle~~-~g~fDtaviN 121 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSIAFS--MPKNESVLGFDIDPEALEIFTRNAEEFEVQ--IDLLQCDILDLELK-GGIFDTAVIN 121 (185)
T ss_pred ccCcchhhhcCchhhhHHHhh--cCCCceEEeeecCHHHHHHHhhchHHhhhh--hheeeeeccchhcc-CCeEeeEEec
Confidence 468899999999999986554 345578999999999999999999998886 58899999887654 3789999999
Q ss_pred CCC
Q 009708 414 APC 416 (528)
Q Consensus 414 ~Pc 416 (528)
||.
T Consensus 122 ppF 124 (185)
T KOG3420|consen 122 PPF 124 (185)
T ss_pred CCC
Confidence 998
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.54 E-value=6.3e-07 Score=97.80 Aligned_cols=137 Identities=12% Similarity=0.130 Sum_probs=100.4
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC-CCCCCEEEEc
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS-TVKCDKVLLD 413 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~-~~~fD~Vl~D 413 (528)
.+..+||+|||.|..++.+|.. .+...++|+|++...+..+.+.++..|+.| +.+++.|+..+.... ..++|.|.++
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~-~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N-~~~~~~~~~~~~~~~~~~sv~~i~i~ 424 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKM-NPDALFIGVEVYLNGVANVLKLAGEQNITN-FLLFPNNLDLILNDLPNNSLDGIYIL 424 (506)
T ss_pred CCceEEEECCCchHHHHHHHHh-CCCCCEEEEEeeHHHHHHHHHHHHHcCCCe-EEEEcCCHHHHHHhcCcccccEEEEE
Confidence 4668999999999999999997 556789999999999999999999999987 778888876554333 4679999988
Q ss_pred CCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHHHhhCCCceEe
Q 009708 414 APCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSID 490 (528)
Q Consensus 414 ~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~l~~~~~~~~~ 490 (528)
=|.- +.|....+. ++ .|..+|+...+.|||||.|.+.|=. ++--+.....+.+++.|+..
T Consensus 425 FPDP----WpKkrh~kr--------Rl--~~~~fl~~~~~~Lk~gG~i~~~TD~---~~y~~~~~~~~~~~~~f~~~ 484 (506)
T PRK01544 425 FPDP----WIKNKQKKK--------RI--FNKERLKILQDKLKDNGNLVFASDI---ENYFYEAIELIQQNGNFEII 484 (506)
T ss_pred CCCC----CCCCCCccc--------cc--cCHHHHHHHHHhcCCCCEEEEEcCC---HHHHHHHHHHHHhCCCeEec
Confidence 7761 222222222 12 3556789999999999999987743 22222233455667777764
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.6e-07 Score=90.43 Aligned_cols=91 Identities=11% Similarity=0.184 Sum_probs=66.8
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDA 414 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~ 414 (528)
++.+|||+|||+|..+..+++.. .++|+|+|+|+.+++.+++.. ..+++|+..++. ..++||+|++.
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~~---------~~~~~d~~~lp~-~d~sfD~v~~~- 117 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVAD---------DKVVGSFEALPF-RDKSFDVVMSS- 117 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhcc---------ceEEechhhCCC-CCCCEEEEEec-
Confidence 46799999999999999998864 469999999999999987531 246788877653 34789999962
Q ss_pred CCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCC
Q 009708 415 PCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459 (528)
Q Consensus 415 Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG 459 (528)
.+ ++.-+ +. .+.++++.+.|||.+
T Consensus 118 ----~~-l~~~~---------d~-------~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 118 ----FA-LHASD---------NI-------EKVIAEFTRVSRKQV 141 (226)
T ss_pred ----Ch-hhccC---------CH-------HHHHHHHHHHhcCce
Confidence 12 22111 11 335899999999943
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.1e-06 Score=84.35 Aligned_cols=46 Identities=15% Similarity=0.187 Sum_probs=41.5
Q ss_pred CCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHH
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKL 382 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~ 382 (528)
+..+||+||-+|..|+++|..++ ...|+|+||++..++.|+++++.
T Consensus 59 ~~~~LDIGCNsG~lt~~iak~F~-~r~iLGvDID~~LI~~Ark~~r~ 104 (288)
T KOG2899|consen 59 PKQALDIGCNSGFLTLSIAKDFG-PRRILGVDIDPVLIQRARKEIRF 104 (288)
T ss_pred cceeEeccCCcchhHHHHHHhhc-cceeeEeeccHHHHHHHHHhccc
Confidence 55799999999999999999876 46799999999999999998764
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.1e-06 Score=87.56 Aligned_cols=85 Identities=19% Similarity=0.179 Sum_probs=69.2
Q ss_pred hHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc
Q 009708 323 SAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 402 (528)
Q Consensus 323 ~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~ 402 (528)
....++..++..++++|||+|||+|..|..+++.. ..|+++|+++.+++.+++++.. .. +++++++|+..+...
T Consensus 17 i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~~iE~d~~~~~~l~~~~~~--~~-~v~v~~~D~~~~~~~ 90 (253)
T TIGR00755 17 VIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRA---KKVTAIEIDPRLAEILRKLLSL--YE-RLEVIEGDALKVDLP 90 (253)
T ss_pred HHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhC---CcEEEEECCHHHHHHHHHHhCc--CC-cEEEEECchhcCChh
Confidence 34556666777889999999999999999999873 4699999999999999987743 23 489999999876532
Q ss_pred CCCCCC---EEEEcCCC
Q 009708 403 STVKCD---KVLLDAPC 416 (528)
Q Consensus 403 ~~~~fD---~Vl~D~Pc 416 (528)
.|| .|+.++|+
T Consensus 91 ---~~d~~~~vvsNlPy 104 (253)
T TIGR00755 91 ---DFPKQLKVVSNLPY 104 (253)
T ss_pred ---HcCCcceEEEcCCh
Confidence 466 99999997
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.7e-06 Score=81.29 Aligned_cols=75 Identities=19% Similarity=0.257 Sum_probs=57.8
Q ss_pred HHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccc-cCC
Q 009708 326 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NST 404 (528)
Q Consensus 326 l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~-~~~ 404 (528)
+++++ +.||.+|||+|||.|....++.+. .+.+.+|+|++++.+..+.+ .| +.++++|+..-.. ...
T Consensus 6 ~I~~~--I~pgsrVLDLGCGdG~LL~~L~~~--k~v~g~GvEid~~~v~~cv~----rG----v~Viq~Dld~gL~~f~d 73 (193)
T PF07021_consen 6 IIAEW--IEPGSRVLDLGCGDGELLAYLKDE--KQVDGYGVEIDPDNVAACVA----RG----VSVIQGDLDEGLADFPD 73 (193)
T ss_pred HHHHH--cCCCCEEEecCCCchHHHHHHHHh--cCCeEEEEecCHHHHHHHHH----cC----CCEEECCHHHhHhhCCC
Confidence 45555 457999999999999998888875 36789999999999876543 35 4578999876443 336
Q ss_pred CCCCEEEE
Q 009708 405 VKCDKVLL 412 (528)
Q Consensus 405 ~~fD~Vl~ 412 (528)
.+||.|++
T Consensus 74 ~sFD~VIl 81 (193)
T PF07021_consen 74 QSFDYVIL 81 (193)
T ss_pred CCccEEeh
Confidence 78999996
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.1e-06 Score=89.06 Aligned_cols=112 Identities=18% Similarity=0.262 Sum_probs=83.4
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDA 414 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~ 414 (528)
.+..|||+|||+|..++..|+. +..+|+|||.|.-. +.+++.++.++++++|+++.+.+.+..- +.+++|+|+..
T Consensus 60 ~dK~VlDVGcGtGILS~F~akA--GA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~L-P~eKVDiIvSE- 134 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKA--GARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIEL-PVEKVDIIVSE- 134 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHh--CcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEec-CccceeEEeeh-
Confidence 5789999999999999999986 46799999988655 9999999999999999999998887632 24789999864
Q ss_pred CCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCC
Q 009708 415 PCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSID 469 (528)
Q Consensus 415 Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~ 469 (528)
+-|... .-...+ ...|-.==++|+|||.++=++|+++
T Consensus 135 -WMGy~L----------l~EsMl-------dsVl~ARdkwL~~~G~i~P~~a~l~ 171 (346)
T KOG1499|consen 135 -WMGYFL----------LYESML-------DSVLYARDKWLKEGGLIYPDRATLY 171 (346)
T ss_pred -hhhHHH----------HHhhhh-------hhhhhhhhhccCCCceEccccceEE
Confidence 212111 001111 1223333578999999998888754
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.2e-06 Score=82.41 Aligned_cols=109 Identities=21% Similarity=0.220 Sum_probs=84.1
Q ss_pred HHHhcC--CCCCCeEEEeCCccchHHHHHHHHcCCCcEE-EEEcCChHHHHHHHHHHHHcCC---------CccEEEEcC
Q 009708 327 VVAVVD--PQPGQSIVDCCAAPGGKTLYMASCLSGQGLV-YAIDINKGRLRILNETAKLHQV---------NSVIRTIHA 394 (528)
Q Consensus 327 ~~~~l~--~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v-~avD~s~~~l~~~~~n~~~~g~---------~~~i~~~~~ 394 (528)
+.+.|. ++||.+.||+|+|+|..|..++.++...|.+ +|||..++.++.+++|+...-- ...+.++.+
T Consensus 72 ~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvG 151 (237)
T KOG1661|consen 72 ALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVG 151 (237)
T ss_pred HHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeC
Confidence 344555 7899999999999999999999887766654 9999999999999999887531 134778899
Q ss_pred ccccccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 395 DLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 395 D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
|.+..... ..+||+|.+-+..+ ++.+..+..|++||.|+.-
T Consensus 152 Dgr~g~~e-~a~YDaIhvGAaa~----------------------------~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 152 DGRKGYAE-QAPYDAIHVGAAAS----------------------------ELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred CccccCCc-cCCcceEEEccCcc----------------------------ccHHHHHHhhccCCeEEEe
Confidence 99876543 47899999864442 1355567779999999853
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.40 E-value=6.3e-07 Score=95.98 Aligned_cols=110 Identities=25% Similarity=0.366 Sum_probs=79.1
Q ss_pred CCeEEEeCCccchHHHHHHHH---cCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEE
Q 009708 336 GQSIVDCCAAPGGKTLYMASC---LSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 412 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~---~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~ 412 (528)
+..|+|+|||+|..+..+++. .+...+|+|||.++.++..+++.++.+|+.++|+++++|++++.. ++++|+|+.
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~l--pekvDIIVS 264 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVEL--PEKVDIIVS 264 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCH--SS-EEEEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCC--CCceeEEEE
Confidence 468999999999998766553 234569999999999999999988999998899999999998764 368999997
Q ss_pred cCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 413 DAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 413 D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
..=-| .|. + +.. -+.|..+-++|||||+++=+.++
T Consensus 265 ElLGs-fg~---n---------El~-------pE~Lda~~rfLkp~Gi~IP~~~t 299 (448)
T PF05185_consen 265 ELLGS-FGD---N---------ELS-------PECLDAADRFLKPDGIMIPSSYT 299 (448)
T ss_dssp ---BT-TBT---T---------TSH-------HHHHHHGGGGEEEEEEEESSEEE
T ss_pred eccCC-ccc---c---------ccC-------HHHHHHHHhhcCCCCEEeCcchh
Confidence 64321 222 1 111 23488889999999998843333
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=98.40 E-value=6.5e-06 Score=81.63 Aligned_cols=130 Identities=15% Similarity=0.137 Sum_probs=99.2
Q ss_pred CCeEEEeCCccchHHHHHHHHcCC-CcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC--CCCCCEEEE
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS--TVKCDKVLL 412 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~~-~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~--~~~fD~Vl~ 412 (528)
.-+|||+|||+|.--+-+....+. ...|.-.|.|+.-++..++.++..|+.+.++|.++|+++..... ....+++++
T Consensus 136 pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~iV 215 (311)
T PF12147_consen 136 PVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAIV 215 (311)
T ss_pred ceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEEE
Confidence 348999999999998887776443 35899999999999999999999999997799999998864322 345688886
Q ss_pred cCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHHHhhCCC
Q 009708 413 DAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPE 486 (528)
Q Consensus 413 D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~l~~~~~ 486 (528)
+|++--.|| .+.+. ..|......+.|||+|||..-.+||+- +.+...|..|.+
T Consensus 216 ------sGL~ElF~D------n~lv~-------~sl~gl~~al~pgG~lIyTgQPwHPQl--e~IAr~LtsHr~ 268 (311)
T PF12147_consen 216 ------SGLYELFPD------NDLVR-------RSLAGLARALEPGGYLIYTGQPWHPQL--EMIARVLTSHRD 268 (311)
T ss_pred ------ecchhhCCc------HHHHH-------HHHHHHHHHhCCCcEEEEcCCCCCcch--HHHHHHHhcccC
Confidence 344433332 11222 247888899999999999888888863 467888988853
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.39 E-value=4.1e-07 Score=83.97 Aligned_cols=99 Identities=17% Similarity=0.202 Sum_probs=82.8
Q ss_pred CeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcCCC
Q 009708 337 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPC 416 (528)
Q Consensus 337 ~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~Pc 416 (528)
+.+-|+|+|+|..+..+|.. ..+|+|++.+|.+...+++|++-.|..| ++++.+|++++.. +..|.|+|.
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~---A~rViAiE~dPk~a~~a~eN~~v~g~~n-~evv~gDA~~y~f---e~ADvvicE--- 103 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA---AERVIAIEKDPKRARLAEENLHVPGDVN-WEVVVGDARDYDF---ENADVVICE--- 103 (252)
T ss_pred hceeeccCCcchHHHHHHhh---hceEEEEecCcHHHHHhhhcCCCCCCcc-eEEEecccccccc---cccceeHHH---
Confidence 68999999999999988875 5689999999999999999999999886 9999999998764 467999852
Q ss_pred CCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEE
Q 009708 417 SGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV 462 (528)
Q Consensus 417 sg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lv 462 (528)
.-+..-+.+-|...++.+.++|+..++++
T Consensus 104 -----------------mlDTaLi~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 104 -----------------MLDTALIEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred -----------------HhhHHhhcccccHHHHHHHHHhhcCCccc
Confidence 12333455567778999999999999887
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=98.36 E-value=6.3e-06 Score=81.70 Aligned_cols=130 Identities=17% Similarity=0.184 Sum_probs=90.1
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCC---CccEEEEcCccccccccCCC-CCCEE
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQV---NSVIRTIHADLRTFADNSTV-KCDKV 410 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~---~~~i~~~~~D~~~~~~~~~~-~fD~V 410 (528)
...+||=+|-|.|+.+..+.+. .+-.+|++||+++..++.+++.+..... +.+++++.+|+..+.....+ +||+|
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~-~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKH-PPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTS-TT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CcCceEEEcCCChhhhhhhhhc-CCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 3569999999999999888765 3346899999999999999998766432 35799999999998876656 89999
Q ss_pred EEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC-CCchhhHHHHHHHHhh
Q 009708 411 LLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS-IDPEENEERVEAFLLR 483 (528)
Q Consensus 411 l~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs-~~~~Ene~~v~~~l~~ 483 (528)
++|.+- ..|.... -...++++.+.+.|+|||+++.-..+ ....+.-..+...++.
T Consensus 155 i~D~~d-p~~~~~~-----------------l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~ 210 (246)
T PF01564_consen 155 IVDLTD-PDGPAPN-----------------LFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRS 210 (246)
T ss_dssp EEESSS-TTSCGGG-----------------GSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHT
T ss_pred EEeCCC-CCCCccc-----------------ccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHH
Confidence 999775 2221000 01245688899999999999975433 3232323334444444
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.4e-06 Score=89.25 Aligned_cols=71 Identities=21% Similarity=0.210 Sum_probs=58.0
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCC----ccEEEEcCccccccccCCCCCCEE
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN----SVIRTIHADLRTFADNSTVKCDKV 410 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~----~~i~~~~~D~~~~~~~~~~~fD~V 410 (528)
+|.+|||+|||+|..+..+++. +.+|+|+|+|+.+++.++++++..+.. ..+++...|+..+ .++||+|
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~---g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l----~~~fD~V 216 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE---GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL----SGKYDTV 216 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc----CCCcCEE
Confidence 5779999999999999999975 468999999999999999998875321 2367888887554 3679999
Q ss_pred EE
Q 009708 411 LL 412 (528)
Q Consensus 411 l~ 412 (528)
++
T Consensus 217 v~ 218 (315)
T PLN02585 217 TC 218 (315)
T ss_pred EE
Confidence 85
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.35 E-value=2e-06 Score=84.96 Aligned_cols=89 Identities=20% Similarity=0.228 Sum_probs=74.0
Q ss_pred HHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC
Q 009708 324 AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS 403 (528)
Q Consensus 324 s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~ 403 (528)
..-+++..++.+++.||++|+|.|+.|..+++. ..+|+|+|+++..+..+++.+. ..++++++++|+..+....
T Consensus 19 ~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~---~~~v~aiEiD~~l~~~L~~~~~---~~~n~~vi~~DaLk~d~~~ 92 (259)
T COG0030 19 IDKIVEAANISPGDNVLEIGPGLGALTEPLLER---AARVTAIEIDRRLAEVLKERFA---PYDNLTVINGDALKFDFPS 92 (259)
T ss_pred HHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhh---cCeEEEEEeCHHHHHHHHHhcc---cccceEEEeCchhcCcchh
Confidence 456778888999999999999999999999987 5689999999999999998776 2235899999999876431
Q ss_pred CCCCCEEEEcCCCCC
Q 009708 404 TVKCDKVLLDAPCSG 418 (528)
Q Consensus 404 ~~~fD~Vl~D~Pcsg 418 (528)
-..++.|+.|.|+.-
T Consensus 93 l~~~~~vVaNlPY~I 107 (259)
T COG0030 93 LAQPYKVVANLPYNI 107 (259)
T ss_pred hcCCCEEEEcCCCcc
Confidence 116899999999953
|
|
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=98.34 E-value=7.6e-07 Score=93.29 Aligned_cols=105 Identities=26% Similarity=0.303 Sum_probs=80.0
Q ss_pred CCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCc-cEEEEcCccccccccCCCCCCEEEEcC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS-VIRTIHADLRTFADNSTVKCDKVLLDA 414 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~-~i~~~~~D~~~~~~~~~~~fD~Vl~D~ 414 (528)
+-+|||.-||+|.-++..+..+.+..+|+++|+|+.+++.+++|++.+++++ ++++.+.|+..+.......||+|=+||
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlDP 129 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLDP 129 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE--
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeCC
Confidence 3489999999999999999887766799999999999999999999999997 789999999887643457899999997
Q ss_pred CCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 415 PCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 415 Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
=-|. .-+|+.|.+.++.|| |++.|||
T Consensus 130 fGSp--------------------------~pfldsA~~~v~~gG-ll~vTaT 155 (377)
T PF02005_consen 130 FGSP--------------------------APFLDSALQAVKDGG-LLCVTAT 155 (377)
T ss_dssp SS----------------------------HHHHHHHHHHEEEEE-EEEEEE-
T ss_pred CCCc--------------------------cHhHHHHHHHhhcCC-EEEEecc
Confidence 6532 235999999999988 5556776
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.34 E-value=3.7e-06 Score=81.89 Aligned_cols=112 Identities=11% Similarity=-0.009 Sum_probs=78.0
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHH------------HHcCCCccEEEEcCcccccc
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETA------------KLHQVNSVIRTIHADLRTFA 400 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~------------~~~g~~~~i~~~~~D~~~~~ 400 (528)
+.++.+||+.|||.|.-..++|++ +-+|+|+|+|+..++.+.+.. .+..- ..|+++++|++++.
T Consensus 41 ~~~~~rvLvPgCGkg~D~~~LA~~---G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~-~~i~~~~gD~f~l~ 116 (226)
T PRK13256 41 INDSSVCLIPMCGCSIDMLFFLSK---GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKG-DDIEIYVADIFNLP 116 (226)
T ss_pred CCCCCeEEEeCCCChHHHHHHHhC---CCcEEEEecCHHHHHHHHHHcCCCcceecccccceecc-CceEEEEccCcCCC
Confidence 345789999999999999999985 568999999999999875521 01111 24899999999985
Q ss_pred c--cCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCC
Q 009708 401 D--NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 468 (528)
Q Consensus 401 ~--~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~ 468 (528)
. ...+.||.|+- --| . ..-.|+ . ..+..+++.++|+|||.++..+-..
T Consensus 117 ~~~~~~~~fD~VyD-ra~--~--~Alpp~--------~-------R~~Y~~~l~~lL~pgg~llll~~~~ 166 (226)
T PRK13256 117 KIANNLPVFDIWYD-RGA--Y--IALPND--------L-------RTNYAKMMLEVCSNNTQILLLVMEH 166 (226)
T ss_pred ccccccCCcCeeee-ehh--H--hcCCHH--------H-------HHHHHHHHHHHhCCCcEEEEEEEec
Confidence 4 22357998762 111 1 111222 2 2335788899999999988776543
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.7e-07 Score=80.33 Aligned_cols=103 Identities=25% Similarity=0.332 Sum_probs=46.0
Q ss_pred EEeCCccchHHHHHHHHcCCCc--EEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCC-CCCCEEEEcCCC
Q 009708 340 VDCCAAPGGKTLYMASCLSGQG--LVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST-VKCDKVLLDAPC 416 (528)
Q Consensus 340 LDl~aG~G~kt~~la~~~~~~~--~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~-~~fD~Vl~D~Pc 416 (528)
|++|++.|..|+.+++.+...+ +++++|..+. .+..++.+++.++.++++++++|..+...... .+||+|++|.+-
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~H 79 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGDH 79 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES--
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCCC
Confidence 6899999999999998776554 7999999997 55566666667887789999999987654433 789999999875
Q ss_pred CCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcC
Q 009708 417 SGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466 (528)
Q Consensus 417 sg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTc 466 (528)
+. +.+ ..-+..+...|+|||++++-.|
T Consensus 80 ~~----------------~~~-------~~dl~~~~~~l~~ggviv~dD~ 106 (106)
T PF13578_consen 80 SY----------------EAV-------LRDLENALPRLAPGGVIVFDDY 106 (106)
T ss_dssp -H----------------HHH-------HHHHHHHGGGEEEEEEEEEE--
T ss_pred CH----------------HHH-------HHHHHHHHHHcCCCeEEEEeCc
Confidence 32 111 2348889999999999997654
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.29 E-value=6.2e-07 Score=85.42 Aligned_cols=108 Identities=18% Similarity=0.227 Sum_probs=77.9
Q ss_pred CCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccc-cCCCCCCEE
Q 009708 332 DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NSTVKCDKV 410 (528)
Q Consensus 332 ~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~-~~~~~fD~V 410 (528)
+..+-.++||+|||+|-.+..+-.+ ..++++||+|..|++.+.+. |+-+ +..++|+..|.. ...++||+|
T Consensus 122 ~~g~F~~~lDLGCGTGL~G~~lR~~---a~~ltGvDiS~nMl~kA~eK----g~YD--~L~~Aea~~Fl~~~~~er~DLi 192 (287)
T COG4976 122 DLGPFRRMLDLGCGTGLTGEALRDM---ADRLTGVDISENMLAKAHEK----GLYD--TLYVAEAVLFLEDLTQERFDLI 192 (287)
T ss_pred cCCccceeeecccCcCcccHhHHHH---HhhccCCchhHHHHHHHHhc----cchH--HHHHHHHHHHhhhccCCcccch
Confidence 3344579999999999998887665 35899999999999887653 3322 356777776654 346789998
Q ss_pred EEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCc
Q 009708 411 LLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDP 470 (528)
Q Consensus 411 l~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~ 470 (528)
.. .++-.+.-....++--+..+|+|||.+.+|.-+...
T Consensus 193 ~A----------------------aDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~ 230 (287)
T COG4976 193 VA----------------------ADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPD 230 (287)
T ss_pred hh----------------------hhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCC
Confidence 74 233333333345688899999999999999876544
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.7e-06 Score=79.98 Aligned_cols=103 Identities=17% Similarity=0.242 Sum_probs=79.9
Q ss_pred CeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEE-EEcCccccccccCCCCCCEEEEc-C
Q 009708 337 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIR-TIHADLRTFADNSTVKCDKVLLD-A 414 (528)
Q Consensus 337 ~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~-~~~~D~~~~~~~~~~~fD~Vl~D-~ 414 (528)
..||++|||||..--+.-. .+..+|+++|.++.+-+.+.+.++.....+ ++ ++.++..+++.-...++|.|++- .
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~--~p~~svt~lDpn~~mee~~~ks~~E~k~~~-~~~fvva~ge~l~~l~d~s~DtVV~Tlv 154 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPW--KPINSVTCLDPNEKMEEIADKSAAEKKPLQ-VERFVVADGENLPQLADGSYDTVVCTLV 154 (252)
T ss_pred cceEEecccCCCCcccccC--CCCceEEEeCCcHHHHHHHHHHHhhccCcc-eEEEEeechhcCcccccCCeeeEEEEEE
Confidence 3689999999986544321 356799999999999999999998886665 55 99999999885556899999854 2
Q ss_pred CCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 415 PCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 415 Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
=||- + .+.+.|++.-++|+|||++++..
T Consensus 155 LCSv----------------e-------~~~k~L~e~~rlLRpgG~iifiE 182 (252)
T KOG4300|consen 155 LCSV----------------E-------DPVKQLNEVRRLLRPGGRIIFIE 182 (252)
T ss_pred Eecc----------------C-------CHHHHHHHHHHhcCCCcEEEEEe
Confidence 3432 1 13455999999999999999754
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.27 E-value=5.5e-06 Score=83.35 Aligned_cols=120 Identities=16% Similarity=0.251 Sum_probs=92.1
Q ss_pred HHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcC--C-CccEEEEcCccccccccC
Q 009708 327 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQ--V-NSVIRTIHADLRTFADNS 403 (528)
Q Consensus 327 ~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g--~-~~~i~~~~~D~~~~~~~~ 403 (528)
+..+..+.| .+||=+|-|.|+.+..+++.. +-.+++.||+++..++.+++-+.... . +.+++++.+|+.++....
T Consensus 69 ~~~~ah~~p-k~VLiiGgGdG~tlRevlkh~-~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~ 146 (282)
T COG0421 69 VPLLAHPNP-KRVLIIGGGDGGTLREVLKHL-PVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDC 146 (282)
T ss_pred chhhhCCCC-CeEEEECCCccHHHHHHHhcC-CcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhC
Confidence 333445666 599999999999999999873 35799999999999999999876643 2 357999999999998776
Q ss_pred CCCCCEEEEcCCC-CCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 404 TVKCDKVLLDAPC-SGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 404 ~~~fD~Vl~D~Pc-sg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
..+||+|++|.-- .|-|. . -...++++.+.+.|+++|++|.-+-|
T Consensus 147 ~~~fDvIi~D~tdp~gp~~--------------~-----Lft~eFy~~~~~~L~~~Gi~v~q~~~ 192 (282)
T COG0421 147 EEKFDVIIVDSTDPVGPAE--------------A-----LFTEEFYEGCRRALKEDGIFVAQAGS 192 (282)
T ss_pred CCcCCEEEEcCCCCCCccc--------------c-----cCCHHHHHHHHHhcCCCcEEEEecCC
Confidence 6689999998322 12111 0 02346799999999999999987555
|
|
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.27 E-value=3.2e-05 Score=77.14 Aligned_cols=90 Identities=24% Similarity=0.369 Sum_probs=76.4
Q ss_pred HHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC---
Q 009708 327 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS--- 403 (528)
Q Consensus 327 ~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~--- 403 (528)
+++.|.+.|+...+|+--|-||-+..+.+.++..++++|+|.++.+++.+++.+...+ ++++++++.+.++....
T Consensus 15 ~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~~l~~~l~~~ 92 (314)
T COG0275 15 VVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFANLAEALKEL 92 (314)
T ss_pred HHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcHHHHHHHHHhc
Confidence 4567888999999999999999999999998878899999999999999999998876 46999999887765432
Q ss_pred -CCCCCEEEEcCCCCC
Q 009708 404 -TVKCDKVLLDAPCSG 418 (528)
Q Consensus 404 -~~~fD~Vl~D~Pcsg 418 (528)
..++|.|++|--.|+
T Consensus 93 ~i~~vDGiL~DLGVSS 108 (314)
T COG0275 93 GIGKVDGILLDLGVSS 108 (314)
T ss_pred CCCceeEEEEeccCCc
Confidence 358999999965544
|
|
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=98.27 E-value=5.9e-06 Score=80.18 Aligned_cols=129 Identities=22% Similarity=0.225 Sum_probs=74.8
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc-CCCCCCEEEEc
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCDKVLLD 413 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~-~~~~fD~Vl~D 413 (528)
.|.+||=+|=.- ..++.+| +.+...+|+.+|+++..++..++.+++.|++ |++++.|+++..+. ..++||.++.|
T Consensus 44 ~gk~il~lGDDD-LtSlA~a-l~~~~~~I~VvDiDeRll~fI~~~a~~~gl~--i~~~~~DlR~~LP~~~~~~fD~f~TD 119 (243)
T PF01861_consen 44 EGKRILFLGDDD-LTSLALA-LTGLPKRITVVDIDERLLDFINRVAEEEGLP--IEAVHYDLRDPLPEELRGKFDVFFTD 119 (243)
T ss_dssp TT-EEEEES-TT--HHHHHH-HHT--SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS---TTTSS-BSEEEE-
T ss_pred cCCEEEEEcCCc-HHHHHHH-hhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc--eEEEEecccccCCHHHhcCCCEEEeC
Confidence 477898776332 2334444 3455679999999999999999999999998 89999999986543 36899999999
Q ss_pred CCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCc--hhhHHHHHHHHhhCCCceEec
Q 009708 414 APCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDP--EENEERVEAFLLRHPEFSIDP 491 (528)
Q Consensus 414 ~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~--~Ene~~v~~~l~~~~~~~~~~ 491 (528)
||++-.|+ .-++..+.+.||..|..+|-.++..+ .+--..++.++.+. ++.+..
T Consensus 120 PPyT~~G~-----------------------~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~~~~~~Q~~l~~~-gl~i~d 175 (243)
T PF01861_consen 120 PPYTPEGL-----------------------KLFLSRGIEALKGEGCAGYFGFTHKEASPDKWLEVQRFLLEM-GLVITD 175 (243)
T ss_dssp --SSHHHH-----------------------HHHHHHHHHTB-STT-EEEEEE-TTT--HHHHHHHHHHHHTS---EEEE
T ss_pred CCCCHHHH-----------------------HHHHHHHHHHhCCCCceEEEEEecCcCcHHHHHHHHHHHHHC-CcCHHH
Confidence 99975444 33699999999987755666566543 22223566666643 444433
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=98.27 E-value=3.5e-06 Score=86.92 Aligned_cols=110 Identities=25% Similarity=0.333 Sum_probs=70.8
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcC---------CCccEEEEcCcccccc--cc-
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQ---------VNSVIRTIHADLRTFA--DN- 402 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g---------~~~~i~~~~~D~~~~~--~~- 402 (528)
++.+|||||||-||-..-.... +-..++|+|++...++.++++.+... ..-...++.+|...-. ..
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~--~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~ 139 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA--KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL 139 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred CCCeEEEecCCCchhHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence 6889999999999976655442 46799999999999999999984321 1113567888876421 11
Q ss_pred C--CCCCCEEEEcCCCCCCccccCCchhhccC-CHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 403 S--TVKCDKVLLDAPCSGLGVLSKRADLRWNR-RLEDMEELKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 403 ~--~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~-~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
. ..+||+|-|--. ++|.. +.+.. +.+|.++...|+|||+++-.|
T Consensus 140 ~~~~~~FDvVScQFa------------lHY~Fese~~a-------r~~l~Nvs~~Lk~GG~FIgT~ 186 (331)
T PF03291_consen 140 PPRSRKFDVVSCQFA------------LHYAFESEEKA-------RQFLKNVSSLLKPGGYFIGTT 186 (331)
T ss_dssp SSTTS-EEEEEEES-------------GGGGGSSHHHH-------HHHHHHHHHTEEEEEEEEEEE
T ss_pred cccCCCcceeehHHH------------HHHhcCCHHHH-------HHHHHHHHHhcCCCCEEEEEe
Confidence 1 258999875311 12322 23333 336999999999999988554
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.27 E-value=1e-05 Score=73.66 Aligned_cols=119 Identities=19% Similarity=0.195 Sum_probs=92.1
Q ss_pred hHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccc-
Q 009708 323 SAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD- 401 (528)
Q Consensus 323 ~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~- 401 (528)
.++.++..+++..|--||++|.|+|-+|-.+.++......++++|.|++.+..+.+.. ++ +.++++|+.++..
T Consensus 36 lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~-----p~-~~ii~gda~~l~~~ 109 (194)
T COG3963 36 LARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY-----PG-VNIINGDAFDLRTT 109 (194)
T ss_pred HHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC-----CC-ccccccchhhHHHH
Confidence 3556677788899999999999999999999998777778999999999998887643 32 5688999987652
Q ss_pred ---cCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 402 ---NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 402 ---~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
.....||.|++-.|.-..-+ . .-.++|+.+...|.+||.+|--|.+
T Consensus 110 l~e~~gq~~D~viS~lPll~~P~-------------~-------~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 110 LGEHKGQFFDSVISGLPLLNFPM-------------H-------RRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred HhhcCCCeeeeEEeccccccCcH-------------H-------HHHHHHHHHHHhcCCCCeEEEEEec
Confidence 22467999998887632111 1 1235799999999999999966655
|
|
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.25 E-value=5.3e-06 Score=79.54 Aligned_cols=124 Identities=25% Similarity=0.273 Sum_probs=92.5
Q ss_pred CCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC--CCCCCE
Q 009708 332 DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS--TVKCDK 409 (528)
Q Consensus 332 ~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~--~~~fD~ 409 (528)
.++||.+||-|||++|....|++..+++.+-|+|||.|+..=..+-..+++- +| |..+..|++...+.- -.-.|.
T Consensus 153 hikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR--tN-iiPIiEDArhP~KYRmlVgmVDv 229 (317)
T KOG1596|consen 153 HIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR--TN-IIPIIEDARHPAKYRMLVGMVDV 229 (317)
T ss_pred eecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc--CC-ceeeeccCCCchheeeeeeeEEE
Confidence 4689999999999999999999999999999999999988776666555442 34 566778888754321 346899
Q ss_pred EEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHH-HHHHHhccCcCCCEEEEE---cCCCCchhhHHHHHHHHhh
Q 009708 410 VLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDE-LLDAASLLVKPGGVLVYS---TCSIDPEENEERVEAFLLR 483 (528)
Q Consensus 410 Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~-lL~~a~~~LkpGG~Lvys---Tcs~~~~Ene~~v~~~l~~ 483 (528)
||.|.+-. + |.+ +.-+|..+||+||.+|+| .|+-..-.+|.+++.-.++
T Consensus 230 IFaDvaqp------------------d-------q~RivaLNA~~FLk~gGhfvisikancidstv~ae~vFa~Ev~k 282 (317)
T KOG1596|consen 230 IFADVAQP------------------D-------QARIVALNAQYFLKNGGHFVISIKANCIDSTVFAEAVFAAEVKK 282 (317)
T ss_pred EeccCCCc------------------h-------hhhhhhhhhhhhhccCCeEEEEEecccccccccHHHHHHHHHHH
Confidence 99998762 1 222 345788999999999865 5665666677776654443
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=98.24 E-value=2.2e-06 Score=80.37 Aligned_cols=111 Identities=20% Similarity=0.227 Sum_probs=66.6
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcC--CCccEEEEcCcccccc--c-cCCCCC
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQ--VNSVIRTIHADLRTFA--D-NSTVKC 407 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g--~~~~i~~~~~D~~~~~--~-~~~~~f 407 (528)
...+.+||++|||+|..++.++... +..+|+.-|.++ .++.++.|++.++ ..+.+.+...|..+.. . ....+|
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~ 120 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSF 120 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSB
T ss_pred hcCCceEEEECCccchhHHHHHhcc-CCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccC
Confidence 3457899999999999999988863 467999999999 9999999999987 4555777666643311 1 123579
Q ss_pred CEEEE-cCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCC
Q 009708 408 DKVLL-DAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSID 469 (528)
Q Consensus 408 D~Vl~-D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~ 469 (528)
|+||. |.=+ . .+. ...|++....+++++|.+++ .+..-
T Consensus 121 D~IlasDv~Y--------------~--~~~-------~~~L~~tl~~ll~~~~~vl~-~~~~R 159 (173)
T PF10294_consen 121 DVILASDVLY--------------D--EEL-------FEPLVRTLKRLLKPNGKVLL-AYKRR 159 (173)
T ss_dssp SEEEEES--S-----------------GGG-------HHHHHHHHHHHBTT-TTEEE-EEE-S
T ss_pred CEEEEecccc--------------h--HHH-------HHHHHHHHHHHhCCCCEEEE-EeCEe
Confidence 99984 3222 1 122 23457778888999998444 44443
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.7e-05 Score=74.47 Aligned_cols=130 Identities=25% Similarity=0.301 Sum_probs=92.8
Q ss_pred CCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC--CCCCCE
Q 009708 332 DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS--TVKCDK 409 (528)
Q Consensus 332 ~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~--~~~fD~ 409 (528)
.+.+|++||=|||++|....|++...+ .|.|+|||.++.....+-..+++- + ++-.+..|+....... -+..|+
T Consensus 73 pi~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~R--~-Ni~PIL~DA~~P~~Y~~~Ve~VDv 148 (231)
T COG1889 73 PIKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEKR--P-NIIPILEDARKPEKYRHLVEKVDV 148 (231)
T ss_pred CcCCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHhC--C-CceeeecccCCcHHhhhhcccccE
Confidence 357899999999999999999999876 799999999999998877777652 2 3778889997654321 467999
Q ss_pred EEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHH-HHHHHhccCcCCCEEE--EEcCCCCchhh-HHHHHHHHhhC-
Q 009708 410 VLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDE-LLDAASLLVKPGGVLV--YSTCSIDPEEN-EERVEAFLLRH- 484 (528)
Q Consensus 410 Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~-lL~~a~~~LkpGG~Lv--ysTcs~~~~En-e~~v~~~l~~~- 484 (528)
|+.|..-- .|.+ +..+|-.+||+||.++ +-..|+..... +++...-+.+.
T Consensus 149 iy~DVAQp-------------------------~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~ 203 (231)
T COG1889 149 IYQDVAQP-------------------------NQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKLE 203 (231)
T ss_pred EEEecCCc-------------------------hHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHHHH
Confidence 99986541 1333 4678899999999544 55566654433 44554444332
Q ss_pred -CCceEe
Q 009708 485 -PEFSID 490 (528)
Q Consensus 485 -~~~~~~ 490 (528)
.+|++.
T Consensus 204 ~~~f~i~ 210 (231)
T COG1889 204 EGGFEIL 210 (231)
T ss_pred hcCceee
Confidence 245554
|
|
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.17 E-value=7e-06 Score=80.29 Aligned_cols=129 Identities=19% Similarity=0.228 Sum_probs=92.4
Q ss_pred HHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCC
Q 009708 325 GLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 404 (528)
Q Consensus 325 ~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~ 404 (528)
.-+++-.++++++.||++|-|||..|..|.+. +.+|+|+|+++.++..++++.+-....+..+++++|+.....
T Consensus 48 ~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~---~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~--- 121 (315)
T KOG0820|consen 48 DQIVEKADLKPTDVVLEVGPGTGNLTVKLLEA---GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL--- 121 (315)
T ss_pred HHHHhccCCCCCCEEEEeCCCCCHHHHHHHHh---cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC---
Confidence 34556667899999999999999999999886 679999999999999999998877666889999999987653
Q ss_pred CCCCEEEEcCCC--CCCcccc--CCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCC
Q 009708 405 VKCDKVLLDAPC--SGLGVLS--KRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSID 469 (528)
Q Consensus 405 ~~fD~Vl~D~Pc--sg~G~~~--~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~ 469 (528)
..||.++.|.|+ |+-+++. .++.+.|. ...-+|+++ |.+++..-|...|+--|+.
T Consensus 122 P~fd~cVsNlPyqISSp~vfKLL~~~~~fr~-------AvlmfQ~Ef---a~RLva~pgd~~Ycrlsin 180 (315)
T KOG0820|consen 122 PRFDGCVSNLPYQISSPLVFKLLLHRPVFRC-------AVLMFQREF---ALRLVARPGDSLYCRLSIN 180 (315)
T ss_pred cccceeeccCCccccCHHHHHhcCCCCCcce-------eeeehhhhh---hhhhccCCCCchhceeehh
Confidence 359999999998 3334322 12223332 011234433 4455555566777655554
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.1e-05 Score=80.79 Aligned_cols=103 Identities=17% Similarity=0.232 Sum_probs=79.3
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDA 414 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~ 414 (528)
.|..|||+|||+|..+..+|+. +..+|+|||.| ++.+.++..++-+++.++|+++.+.+.+.. .+++.|+||..|
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqA--GA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdie--LPEk~DviISEP 251 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQA--GAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIE--LPEKVDVIISEP 251 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHh--CcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCcccccc--CchhccEEEecc
Confidence 4779999999999999998875 56799999976 678899999999999999999999887754 358899999876
Q ss_pred CCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEE
Q 009708 415 PCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV 462 (528)
Q Consensus 415 Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lv 462 (528)
-- .+-- +...++. .-+|.++|||.|.++
T Consensus 252 MG----~mL~--------NERMLEs--------Yl~Ark~l~P~GkMf 279 (517)
T KOG1500|consen 252 MG----YMLV--------NERMLES--------YLHARKWLKPNGKMF 279 (517)
T ss_pred ch----hhhh--------hHHHHHH--------HHHHHhhcCCCCccc
Confidence 53 2111 1122222 335669999999876
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.16 E-value=5.2e-06 Score=80.71 Aligned_cols=137 Identities=21% Similarity=0.268 Sum_probs=87.0
Q ss_pred cCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHH-cC----------CCccEEEEcCccccc
Q 009708 331 VDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKL-HQ----------VNSVIRTIHADLRTF 399 (528)
Q Consensus 331 l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~-~g----------~~~~i~~~~~D~~~~ 399 (528)
+...++.+||..|||.|.-...+|++ +-+|+|+|+|+.+++.+.+.... .. -.+.|+++++|++.+
T Consensus 33 l~~~~~~rvLvPgCG~g~D~~~La~~---G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l 109 (218)
T PF05724_consen 33 LALKPGGRVLVPGCGKGYDMLWLAEQ---GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFEL 109 (218)
T ss_dssp HTTSTSEEEEETTTTTSCHHHHHHHT---TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTG
T ss_pred cCCCCCCeEEEeCCCChHHHHHHHHC---CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccC
Confidence 34567789999999999999999985 46899999999999987332111 00 012478999999998
Q ss_pred cccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchh-------
Q 009708 400 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEE------- 472 (528)
Q Consensus 400 ~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~E------- 472 (528)
.....++||.|+ |=-| . ..-.|+. .. +..+++.++|+|||++++.|-.+...+
T Consensus 110 ~~~~~g~fD~iy-Dr~~--l--~Alpp~~--------R~-------~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~ 169 (218)
T PF05724_consen 110 PPEDVGKFDLIY-DRTF--L--CALPPEM--------RE-------RYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFS 169 (218)
T ss_dssp GGSCHHSEEEEE-ECSS--T--TTS-GGG--------HH-------HHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS--
T ss_pred ChhhcCCceEEE-Eecc--c--ccCCHHH--------HH-------HHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCC
Confidence 765556899886 3222 1 2223332 22 247788999999999555544322111
Q ss_pred -hHHHHHHHHhhCCCceEecC
Q 009708 473 -NEERVEAFLLRHPEFSIDPA 492 (528)
Q Consensus 473 -ne~~v~~~l~~~~~~~~~~~ 492 (528)
.++.+..++. ++|++..+
T Consensus 170 v~~~ev~~l~~--~~f~i~~l 188 (218)
T PF05724_consen 170 VTEEEVRELFG--PGFEIEEL 188 (218)
T ss_dssp --HHHHHHHHT--TTEEEEEE
T ss_pred CCHHHHHHHhc--CCcEEEEE
Confidence 2334555555 56666544
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.5e-06 Score=91.31 Aligned_cols=107 Identities=25% Similarity=0.361 Sum_probs=91.3
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC---CCCCCEE
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS---TVKCDKV 410 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~---~~~fD~V 410 (528)
.++-+|||.-|++|.-++..|..+++-+.|+|.|.++..++..++|++.++.++.++..+.|+..+.-.. ...||+|
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvI 187 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVI 187 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceE
Confidence 3466899999999999999999999888999999999999999999999999998999999987654333 3689999
Q ss_pred EEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 411 LLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 411 l~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
=+||--|.+ .+|+.|.+.+..|| |++.|||
T Consensus 188 DLDPyGs~s--------------------------~FLDsAvqav~~gG-LL~vT~T 217 (525)
T KOG1253|consen 188 DLDPYGSPS--------------------------PFLDSAVQAVRDGG-LLCVTCT 217 (525)
T ss_pred ecCCCCCcc--------------------------HHHHHHHHHhhcCC-EEEEEec
Confidence 999765431 25999999999999 5567887
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.2e-05 Score=76.01 Aligned_cols=99 Identities=20% Similarity=0.237 Sum_probs=77.7
Q ss_pred eEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcCCCC
Q 009708 338 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCS 417 (528)
Q Consensus 338 ~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~Pcs 417 (528)
+|+|+|+|.|-=++-+|-.. +..+++.+|.+..++..++.-+..+|++| ++++++.+.+ ......||.|++=+=.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~-p~~~~~LvEs~~KK~~FL~~~~~~L~L~n-v~v~~~R~E~--~~~~~~fd~v~aRAv~- 125 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIAR-PDLQVTLVESVGKKVAFLKEVVRELGLSN-VEVINGRAEE--PEYRESFDVVTARAVA- 125 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH--TTSEEEEEESSHHHHHHHHHHHHHHT-SS-EEEEES-HHH--TTTTT-EEEEEEESSS-
T ss_pred eEEecCCCCCChhHHHHHhC-CCCcEEEEeCCchHHHHHHHHHHHhCCCC-EEEEEeeecc--cccCCCccEEEeehhc-
Confidence 79999999998888887654 57899999999999999999999999997 9999999988 2235789999963332
Q ss_pred CCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcC
Q 009708 418 GLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466 (528)
Q Consensus 418 g~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTc 466 (528)
.+ ..++.-+..++++||+++..--
T Consensus 126 ------------------~l-------~~l~~~~~~~l~~~G~~l~~KG 149 (184)
T PF02527_consen 126 ------------------PL-------DKLLELARPLLKPGGRLLAYKG 149 (184)
T ss_dssp ------------------SH-------HHHHHHHGGGEEEEEEEEEEES
T ss_pred ------------------CH-------HHHHHHHHHhcCCCCEEEEEcC
Confidence 11 2358889999999999885543
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=98.13 E-value=5.6e-06 Score=78.85 Aligned_cols=113 Identities=25% Similarity=0.389 Sum_probs=78.9
Q ss_pred CeEEEeCCccchHHHHHHHHcCC----Cc----EEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccc------c
Q 009708 337 QSIVDCCAAPGGKTLYMASCLSG----QG----LVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD------N 402 (528)
Q Consensus 337 ~~VLDl~aG~G~kt~~la~~~~~----~~----~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~------~ 402 (528)
.+|+|+||+||.++..+++.+-. .+ .|+|||+.+-. .+++ |..+++|++.... .
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma-----------PI~G-V~qlq~DIT~~stae~Ii~h 110 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA-----------PIEG-VIQLQGDITSASTAEAIIEH 110 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC-----------ccCc-eEEeecccCCHhHHHHHHHH
Confidence 47999999999999999987743 22 39999997543 5665 6678999887432 1
Q ss_pred C-CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHH--HHHHHHhccCcCCCEEEEEcCCCCchhhHHHH
Q 009708 403 S-TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQD--ELLDAASLLVKPGGVLVYSTCSIDPEENEERV 477 (528)
Q Consensus 403 ~-~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~--~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v 477 (528)
+ .++.|+|+||...--+|+ .++.++...|. .-|.-+..+|||||.+| -.++..++...+
T Consensus 111 fggekAdlVvcDGAPDvTGl-------------Hd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FV---aKifRg~~tslL 172 (294)
T KOG1099|consen 111 FGGEKADLVVCDGAPDVTGL-------------HDLDEYVQAQLLLAALNIATCVLKPGGSFV---AKIFRGRDTSLL 172 (294)
T ss_pred hCCCCccEEEeCCCCCcccc-------------ccHHHHHHHHHHHHHHHHHhheecCCCeee---hhhhccCchHHH
Confidence 2 468999999966555666 56666643332 23445567899999999 566666655443
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=98.13 E-value=9.8e-06 Score=77.30 Aligned_cols=72 Identities=19% Similarity=0.231 Sum_probs=53.6
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccc-cccCCCCCCEEEE
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF-ADNSTVKCDKVLL 412 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~-~~~~~~~fD~Vl~ 412 (528)
.++++|||+|||+|..+..++... ...++++|+++.+++.++. .+ ++++++|+... .....++||.|++
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~----~~----~~~~~~d~~~~l~~~~~~sfD~Vi~ 81 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLACVA----RG----VNVIQGDLDEGLEAFPDKSFDYVIL 81 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHHHHH----cC----CeEEEEEhhhcccccCCCCcCEEEE
Confidence 367799999999999998887652 3578999999999988753 12 56778887652 2223468999998
Q ss_pred cCC
Q 009708 413 DAP 415 (528)
Q Consensus 413 D~P 415 (528)
..+
T Consensus 82 ~~~ 84 (194)
T TIGR02081 82 SQT 84 (194)
T ss_pred hhH
Confidence 643
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.2e-05 Score=81.66 Aligned_cols=90 Identities=22% Similarity=0.327 Sum_probs=74.2
Q ss_pred HHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC---
Q 009708 327 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS--- 403 (528)
Q Consensus 327 ~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~--- 403 (528)
+.+++.+++|+.++|+-+|-||-|..+++.+++ ++|+|+|.++.++..++++++.. .++++++++++.++....
T Consensus 12 vl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~-g~vigiD~D~~Al~~ak~~L~~~--~~R~~~i~~nF~~l~~~l~~~ 88 (305)
T TIGR00006 12 VVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGT-GRLIGIDRDPQAIAFAKERLSDF--EGRVVLIHDNFANFFEHLDEL 88 (305)
T ss_pred HHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHHhhc--CCcEEEEeCCHHHHHHHHHhc
Confidence 445677889999999999999999999998764 99999999999999999988765 346999999998865422
Q ss_pred -CCCCCEEEEcCCCCCC
Q 009708 404 -TVKCDKVLLDAPCSGL 419 (528)
Q Consensus 404 -~~~fD~Vl~D~Pcsg~ 419 (528)
..++|.|++|-=+|+.
T Consensus 89 ~~~~vDgIl~DLGvSS~ 105 (305)
T TIGR00006 89 LVTKIDGILVDLGVSSP 105 (305)
T ss_pred CCCcccEEEEeccCCHh
Confidence 2469999999666543
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=98.12 E-value=2.5e-05 Score=75.12 Aligned_cols=121 Identities=20% Similarity=0.259 Sum_probs=86.4
Q ss_pred EEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcCCCCC
Q 009708 339 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSG 418 (528)
Q Consensus 339 VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg 418 (528)
|.|+||--|...++|++. +...+++|+|+++.-++.+++++++.|+.++|++..+|....... .+..|.|++ .|
T Consensus 1 vaDIGtDHgyLpi~L~~~-~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~-~e~~d~ivI----AG 74 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKN-GKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKP-GEDVDTIVI----AG 74 (205)
T ss_dssp EEEET-STTHHHHHHHHT-TSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--G-GG---EEEE----EE
T ss_pred CceeccchhHHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCC-CCCCCEEEE----ec
Confidence 689999999999999986 334579999999999999999999999999999999998775432 233788886 46
Q ss_pred CccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHHHhhCCCceEec
Q 009708 419 LGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDP 491 (528)
Q Consensus 419 ~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~l~~~~~~~~~~ 491 (528)
.|- .+-.+||+.....++....||. .|..+...+..||..+ +|.+..
T Consensus 75 MGG--------------------~lI~~ILe~~~~~~~~~~~lIL-----qP~~~~~~LR~~L~~~-gf~I~~ 121 (205)
T PF04816_consen 75 MGG--------------------ELIIEILEAGPEKLSSAKRLIL-----QPNTHAYELRRWLYEN-GFEIID 121 (205)
T ss_dssp E-H--------------------HHHHHHHHHTGGGGTT--EEEE-----EESS-HHHHHHHHHHT-TEEEEE
T ss_pred CCH--------------------HHHHHHHHhhHHHhccCCeEEE-----eCCCChHHHHHHHHHC-CCEEEE
Confidence 554 2345678888888877667775 3455667888999887 466644
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.11 E-value=2.3e-05 Score=77.25 Aligned_cols=115 Identities=18% Similarity=0.218 Sum_probs=82.9
Q ss_pred HHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCC
Q 009708 326 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 405 (528)
Q Consensus 326 l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~ 405 (528)
.+....+..+..+|+|+|+|.|..+..+++.. +..+++.+|. |..++.+++ .++|+++.+|+++- .+.
T Consensus 91 ~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~v~~~~~~-------~~rv~~~~gd~f~~---~P~ 158 (241)
T PF00891_consen 91 ILLEAFDFSGFKTVVDVGGGSGHFAIALARAY-PNLRATVFDL-PEVIEQAKE-------ADRVEFVPGDFFDP---LPV 158 (241)
T ss_dssp HHHHHSTTTTSSEEEEET-TTSHHHHHHHHHS-TTSEEEEEE--HHHHCCHHH-------TTTEEEEES-TTTC---CSS
T ss_pred hhhccccccCccEEEeccCcchHHHHHHHHHC-CCCcceeecc-Hhhhhcccc-------ccccccccccHHhh---hcc
Confidence 34455566667799999999999999999884 5789999998 888887777 45799999999832 234
Q ss_pred CCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCC--CEEEEEcCCCCchhh
Q 009708 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPG--GVLVYSTCSIDPEEN 473 (528)
Q Consensus 406 ~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpG--G~LvysTcs~~~~En 473 (528)
+|+|++- . +-+.++.++... ||+++...|+|| |+|++....+.....
T Consensus 159 -~D~~~l~------~-------vLh~~~d~~~~~-------iL~~~~~al~pg~~g~llI~e~~~~~~~~ 207 (241)
T PF00891_consen 159 -ADVYLLR------H-------VLHDWSDEDCVK-------ILRNAAAALKPGKDGRLLIIEMVLPDDRT 207 (241)
T ss_dssp -ESEEEEE------S-------SGGGS-HHHHHH-------HHHHHHHHSEECTTEEEEEEEEEECSSSS
T ss_pred -ccceeee------h-------hhhhcchHHHHH-------HHHHHHHHhCCCCCCeEEEEeeccCCCCC
Confidence 9999971 1 222344455544 599999999999 999988776554433
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.2e-05 Score=80.44 Aligned_cols=116 Identities=20% Similarity=0.200 Sum_probs=79.2
Q ss_pred HHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCc-----cEEEEcCcccc
Q 009708 324 AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS-----VIRTIHADLRT 398 (528)
Q Consensus 324 s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~-----~i~~~~~D~~~ 398 (528)
|+|+-... ++++.++|||||-||-.+-.-.. +-+.++++||..-.++.++.+.+.+.-.. .+.++.+|.+.
T Consensus 108 s~LI~~y~--~~~~~~~~LgCGKGGDLlKw~kA--gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~ 183 (389)
T KOG1975|consen 108 SVLINLYT--KRGDDVLDLGCGKGGDLLKWDKA--GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFK 183 (389)
T ss_pred HHHHHHHh--ccccccceeccCCcccHhHhhhh--cccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccch
Confidence 55665554 46889999999999988765542 45789999999999999998776542211 25788898865
Q ss_pred cc-----ccCCCCCCEEEEcCCCCCCccccCCchhhccC-CHHHHHHHHHHHHHHHHHHhccCcCCCEEE
Q 009708 399 FA-----DNSTVKCDKVLLDAPCSGLGVLSKRADLRWNR-RLEDMEELKILQDELLDAASLLVKPGGVLV 462 (528)
Q Consensus 399 ~~-----~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~-~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lv 462 (528)
-. +....+||+|-|--.| +|.. +.+.. +.+|.++...|||||+++
T Consensus 184 ~~l~d~~e~~dp~fDivScQF~~------------HYaFetee~a-------r~~l~Nva~~LkpGG~FI 234 (389)
T KOG1975|consen 184 ERLMDLLEFKDPRFDIVSCQFAF------------HYAFETEESA-------RIALRNVAKCLKPGGVFI 234 (389)
T ss_pred hHHHHhccCCCCCcceeeeeeeE------------eeeeccHHHH-------HHHHHHHHhhcCCCcEEE
Confidence 21 1112349988654333 2222 22222 336999999999999988
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=4.5e-05 Score=67.95 Aligned_cols=76 Identities=12% Similarity=-0.003 Sum_probs=56.7
Q ss_pred HHHHhcCCCCCCeEEEeCCccch-HHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCC
Q 009708 326 LVVAVVDPQPGQSIVDCCAAPGG-KTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 404 (528)
Q Consensus 326 l~~~~l~~~~g~~VLDl~aG~G~-kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~ 404 (528)
++...+....+.+|||+|||+|. .+..+++. +..|+|+|+++.+++.++++ + +.++.+|.++.....-
T Consensus 7 ~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~---G~~ViaIDi~~~aV~~a~~~----~----~~~v~dDlf~p~~~~y 75 (134)
T PRK04148 7 FIAENYEKGKNKKIVELGIGFYFKVAKKLKES---GFDVIVIDINEKAVEKAKKL----G----LNAFVDDLFNPNLEIY 75 (134)
T ss_pred HHHHhcccccCCEEEEEEecCCHHHHHHHHHC---CCEEEEEECCHHHHHHHHHh----C----CeEEECcCCCCCHHHH
Confidence 34444444456789999999996 77777753 46999999999988877654 2 5678999988665444
Q ss_pred CCCCEEEE
Q 009708 405 VKCDKVLL 412 (528)
Q Consensus 405 ~~fD~Vl~ 412 (528)
+.+|+|..
T Consensus 76 ~~a~liys 83 (134)
T PRK04148 76 KNAKLIYS 83 (134)
T ss_pred hcCCEEEE
Confidence 67999985
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.01 E-value=4.7e-05 Score=73.38 Aligned_cols=98 Identities=19% Similarity=0.235 Sum_probs=79.4
Q ss_pred CCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAP 415 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~P 415 (528)
+.+|+|+|+|.|-=++-+|- +.++.+|+-+|....++..++.-.+.+|++| ++++++.+.++...... ||.|.+=+=
T Consensus 68 ~~~~~DIGSGaGfPGipLAI-~~p~~~vtLles~~Kk~~FL~~~~~eL~L~n-v~i~~~RaE~~~~~~~~-~D~vtsRAv 144 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAI-AFPDLKVTLLESLGKKIAFLREVKKELGLEN-VEIVHGRAEEFGQEKKQ-YDVVTSRAV 144 (215)
T ss_pred CCEEEEeCCCCCCchhhHHH-hccCCcEEEEccCchHHHHHHHHHHHhCCCC-eEEehhhHhhccccccc-CcEEEeehc
Confidence 57999999999999988884 3557789999999999999999999999997 99999999887754222 999986322
Q ss_pred CCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEE
Q 009708 416 CSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV 462 (528)
Q Consensus 416 csg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lv 462 (528)
+ .+ ..+.+-+..++|+||.++
T Consensus 145 a----------------------~L----~~l~e~~~pllk~~g~~~ 165 (215)
T COG0357 145 A----------------------SL----NVLLELCLPLLKVGGGFL 165 (215)
T ss_pred c----------------------ch----HHHHHHHHHhcccCCcch
Confidence 2 11 234777899999988875
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.6e-05 Score=76.73 Aligned_cols=130 Identities=13% Similarity=0.199 Sum_probs=78.0
Q ss_pred HHHHhcCCCCCC-eEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCC
Q 009708 326 LVVAVVDPQPGQ-SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 404 (528)
Q Consensus 326 l~~~~l~~~~g~-~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~ 404 (528)
+.-.+....++. .++|+|||+|-.+..+|.+. .+|+|+|+|+.+|+.+++.....-+.........+..++... .
T Consensus 23 w~~~ia~~~~~h~~a~DvG~G~Gqa~~~iae~~---k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~-e 98 (261)
T KOG3010|consen 23 WFKKIASRTEGHRLAWDVGTGNGQAARGIAEHY---KEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGG-E 98 (261)
T ss_pred HHHHHHhhCCCcceEEEeccCCCcchHHHHHhh---hhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCC-C
Confidence 334444455555 79999999996666777663 479999999999998876543322221233444444444422 4
Q ss_pred CCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCC-EEE---EEcCCCCchhhHHHHHHH
Q 009708 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG-VLV---YSTCSIDPEENEERVEAF 480 (528)
Q Consensus 405 ~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG-~Lv---ysTcs~~~~Ene~~v~~~ 480 (528)
+++|+|++ +-| ++|- ++ .++.+.+.++||+.| ++. |.+-.+...|-..+...+
T Consensus 99 ~SVDlI~~-Aqa-----------~HWF----dl-------e~fy~~~~rvLRk~Gg~iavW~Y~dd~v~~pE~dsv~~r~ 155 (261)
T KOG3010|consen 99 ESVDLITA-AQA-----------VHWF----DL-------ERFYKEAYRVLRKDGGLIAVWNYNDDFVDWPEFDSVMLRL 155 (261)
T ss_pred cceeeehh-hhh-----------HHhh----ch-------HHHHHHHHHHcCCCCCEEEEEEccCCCcCCHHHHHHHHHH
Confidence 78999985 333 2342 22 345888999999877 433 333233334444444444
Q ss_pred Hh
Q 009708 481 LL 482 (528)
Q Consensus 481 l~ 482 (528)
..
T Consensus 156 ~~ 157 (261)
T KOG3010|consen 156 YD 157 (261)
T ss_pred hh
Confidence 44
|
|
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=97.98 E-value=3.1e-05 Score=69.43 Aligned_cols=116 Identities=24% Similarity=0.330 Sum_probs=76.5
Q ss_pred EEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCC-CCCEEEEcCCCCCCccccCCchhhccCCHHHHHHH
Q 009708 362 LVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV-KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEEL 440 (528)
Q Consensus 362 ~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~-~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l 440 (528)
+|+|+||.+++++..+++++..++.+++++++..-.++....+. ++|.++.| .|.+.... +.+...
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFN-----LGYLPggD--------k~i~T~ 67 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFN-----LGYLPGGD--------KSITTK 67 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEE-----ESB-CTS---------TTSB--
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEE-----CCcCCCCC--------CCCCcC
Confidence 69999999999999999999999988899999887777654444 79999876 33333211 111222
Q ss_pred HHHHHHHHHHHhccCcCCCEEEEEcCCCCch--hhHHHHHHHHhhCC--CceEe
Q 009708 441 KILQDELLDAASLLVKPGGVLVYSTCSIDPE--ENEERVEAFLLRHP--EFSID 490 (528)
Q Consensus 441 ~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~--Ene~~v~~~l~~~~--~~~~~ 490 (528)
.+.-..-|+.++++|+|||.|+.....-|++ |..+.|..|+..-+ .|.+.
T Consensus 68 ~~TTl~Al~~al~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L~~~~~~V~ 121 (140)
T PF06962_consen 68 PETTLKALEAALELLKPGGIITIVVYPGHPGGKEESEAVEEFLASLDQKEFNVL 121 (140)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS-TTTEEEE
T ss_pred cHHHHHHHHHHHHhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCcceEEEE
Confidence 2333445899999999999999887777874 33456788888754 45443
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.89 E-value=4.1e-05 Score=78.29 Aligned_cols=103 Identities=22% Similarity=0.253 Sum_probs=82.9
Q ss_pred CCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAP 415 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~P 415 (528)
..+|+|..||+|.=++.+|...+.. +|+..|+||.+++.+++|++.+...+ ..+++.|+..+.......||+|=+||=
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~-~v~lNDisp~Avelik~Nv~~N~~~~-~~v~n~DAN~lm~~~~~~fd~IDiDPF 130 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVV-KVVLNDISPKAVELIKENVRLNSGED-AEVINKDANALLHELHRAFDVIDIDPF 130 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCcc-EEEEccCCHHHHHHHHHHHHhcCccc-ceeecchHHHHHHhcCCCccEEecCCC
Confidence 5689999999999999999876543 89999999999999999999994444 566778988776554578999999975
Q ss_pred CCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 416 CSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 416 csg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
-|- .-+++.|.+.++.||+|. .|||
T Consensus 131 GSP--------------------------aPFlDaA~~s~~~~G~l~-vTAT 155 (380)
T COG1867 131 GSP--------------------------APFLDAALRSVRRGGLLC-VTAT 155 (380)
T ss_pred CCC--------------------------chHHHHHHHHhhcCCEEE-EEec
Confidence 432 125899999999999765 4555
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=97.85 E-value=5.5e-05 Score=73.96 Aligned_cols=40 Identities=23% Similarity=0.312 Sum_probs=34.5
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHH
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRI 375 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~ 375 (528)
.+|.+|||+|||||++|..+++. +..+|+|+|+++.++..
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~--ga~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQK--GAKEVYGVDVGYNQLAE 113 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHc--CCCEEEEEeCCHHHHHH
Confidence 36779999999999999999985 46799999999987754
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=97.85 E-value=5.4e-05 Score=70.01 Aligned_cols=82 Identities=15% Similarity=0.192 Sum_probs=59.0
Q ss_pred EEEcCChHHHHHHHHHHHHcC--CCccEEEEcCccccccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHH
Q 009708 364 YAIDINKGRLRILNETAKLHQ--VNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELK 441 (528)
Q Consensus 364 ~avD~s~~~l~~~~~n~~~~g--~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~ 441 (528)
+|+|+|+.+++.++++.+..+ ..++++++++|+.+++. ..++||.|++. .+. +.-+
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~-~~~~fD~v~~~-----~~l-~~~~--------------- 58 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPF-DDCEFDAVTMG-----YGL-RNVV--------------- 58 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCC-CCCCeeEEEec-----chh-hcCC---------------
Confidence 489999999999987765432 22358999999988753 34689999862 222 1111
Q ss_pred HHHHHHHHHHhccCcCCCEEEEEcCCC
Q 009708 442 ILQDELLDAASLLVKPGGVLVYSTCSI 468 (528)
Q Consensus 442 ~~q~~lL~~a~~~LkpGG~LvysTcs~ 468 (528)
...+.|+++.++|||||.|++...+.
T Consensus 59 -d~~~~l~ei~rvLkpGG~l~i~d~~~ 84 (160)
T PLN02232 59 -DRLRAMKEMYRVLKPGSRVSILDFNK 84 (160)
T ss_pred -CHHHHHHHHHHHcCcCeEEEEEECCC
Confidence 12456999999999999999876664
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=97.83 E-value=4.8e-05 Score=76.16 Aligned_cols=88 Identities=19% Similarity=0.229 Sum_probs=71.5
Q ss_pred hHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc
Q 009708 323 SAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 402 (528)
Q Consensus 323 ~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~ 402 (528)
...-++..+++.+++.|||+|+|+|..|..+++. ..+|+++|+++..++.+++... ...+++++++|+..+...
T Consensus 18 ~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~---~~~v~~vE~d~~~~~~L~~~~~---~~~~~~vi~~D~l~~~~~ 91 (262)
T PF00398_consen 18 IADKIVDALDLSEGDTVLEIGPGPGALTRELLKR---GKRVIAVEIDPDLAKHLKERFA---SNPNVEVINGDFLKWDLY 91 (262)
T ss_dssp HHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHH---SSEEEEEESSHHHHHHHHHHCT---TCSSEEEEES-TTTSCGG
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCCccchhhHhcc---cCcceeecCcHhHHHHHHHHhh---hcccceeeecchhccccH
Confidence 4566777888889999999999999999999987 3799999999999999998765 233599999999987654
Q ss_pred C--CCCCCEEEEcCCC
Q 009708 403 S--TVKCDKVLLDAPC 416 (528)
Q Consensus 403 ~--~~~fD~Vl~D~Pc 416 (528)
. ......|+.+.|+
T Consensus 92 ~~~~~~~~~vv~NlPy 107 (262)
T PF00398_consen 92 DLLKNQPLLVVGNLPY 107 (262)
T ss_dssp GHCSSSEEEEEEEETG
T ss_pred HhhcCCceEEEEEecc
Confidence 2 2356689999998
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00016 Score=69.59 Aligned_cols=120 Identities=19% Similarity=0.191 Sum_probs=69.6
Q ss_pred HHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHH-------HcCC-CccEEEEcCccccc
Q 009708 328 VAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAK-------LHQV-NSVIRTIHADLRTF 399 (528)
Q Consensus 328 ~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~-------~~g~-~~~i~~~~~D~~~~ 399 (528)
...+++.+++.++|+|||.|...+++|... +..+.+|||+.+...+.++.+.+ ..|. ...+++.++|+.+.
T Consensus 35 l~~~~l~~~dvF~DlGSG~G~~v~~aal~~-~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~ 113 (205)
T PF08123_consen 35 LDELNLTPDDVFYDLGSGVGNVVFQAALQT-GCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDP 113 (205)
T ss_dssp HHHTT--TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTH
T ss_pred HHHhCCCCCCEEEECCCCCCHHHHHHHHHc-CCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCcccc
Confidence 355678899999999999999998888764 45679999999999987765443 3444 23578889998764
Q ss_pred ccc--CCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchh
Q 009708 400 ADN--STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEE 472 (528)
Q Consensus 400 ~~~--~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~E 472 (528)
... .-...|+|++|--|.+ .++... |...+.-||+|-++| ++-++.+..
T Consensus 114 ~~~~~~~s~AdvVf~Nn~~F~----------------~~l~~~-------L~~~~~~lk~G~~II-s~~~~~~~~ 164 (205)
T PF08123_consen 114 DFVKDIWSDADVVFVNNTCFD----------------PDLNLA-------LAELLLELKPGARII-STKPFCPRR 164 (205)
T ss_dssp HHHHHHGHC-SEEEE--TTT-----------------HHHHHH-------HHHHHTTS-TT-EEE-ESS-SS-TT
T ss_pred HhHhhhhcCCCEEEEeccccC----------------HHHHHH-------HHHHHhcCCCCCEEE-ECCCcCCCC
Confidence 321 1134799999887742 112111 345556788876655 666666543
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00029 Score=67.26 Aligned_cols=144 Identities=19% Similarity=0.260 Sum_probs=95.7
Q ss_pred HHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc--
Q 009708 325 GLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-- 402 (528)
Q Consensus 325 ~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~-- 402 (528)
..+..++. ..+.+||++|||+|--+.++|+.++ .-+-.-.|.++..+..++..+...+++|....+..|+......
T Consensus 16 ~vL~~~l~-~~~~~vLEiaSGtGqHa~~FA~~lP-~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~ 93 (204)
T PF06080_consen 16 EVLKQYLP-DSGTRVLEIASGTGQHAVYFAQALP-HLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWE 93 (204)
T ss_pred HHHHHHhC-ccCceEEEEcCCccHHHHHHHHHCC-CCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccc
Confidence 34444443 2333699999999999999999986 4677788999999999999999989887656667777654221
Q ss_pred -----CCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEE-EEcCC----CCchh
Q 009708 403 -----STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV-YSTCS----IDPEE 472 (528)
Q Consensus 403 -----~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lv-ysTcs----~~~~E 472 (528)
....||.|++--- + ++..- ..-..++..+.++|++||.|+ |--.. +.++-
T Consensus 94 ~~~~~~~~~~D~i~~~N~------l-------------HI~p~-~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~S 153 (204)
T PF06080_consen 94 LPAPLSPESFDAIFCINM------L-------------HISPW-SAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSES 153 (204)
T ss_pred cccccCCCCcceeeehhH------H-------------HhcCH-HHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcH
Confidence 1357999985111 0 11111 112457999999999999977 44333 33444
Q ss_pred hHHHHHHHHhh-CCCceEec
Q 009708 473 NEERVEAFLLR-HPEFSIDP 491 (528)
Q Consensus 473 ne~~v~~~l~~-~~~~~~~~ 491 (528)
|+ .+...|+. .|.+-+-.
T Consensus 154 N~-~FD~sLr~rdp~~GiRD 172 (204)
T PF06080_consen 154 NA-AFDASLRSRDPEWGIRD 172 (204)
T ss_pred HH-HHHHHHhcCCCCcCccC
Confidence 44 56666764 46554433
|
The function of this family is unknown. |
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00011 Score=72.17 Aligned_cols=93 Identities=24% Similarity=0.267 Sum_probs=64.7
Q ss_pred CCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAP 415 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~P 415 (528)
..++||+|||-|+.|..++..+ .+|++.|.|+.|...++ +-|.+ ++..| ++.. .+.+||+|.|
T Consensus 95 ~~~lLDlGAGdG~VT~~l~~~f---~~v~aTE~S~~Mr~rL~----~kg~~----vl~~~--~w~~-~~~~fDvIsc--- 157 (265)
T PF05219_consen 95 DKSLLDLGAGDGEVTERLAPLF---KEVYATEASPPMRWRLS----KKGFT----VLDID--DWQQ-TDFKFDVISC--- 157 (265)
T ss_pred CCceEEecCCCcHHHHHHHhhc---ceEEeecCCHHHHHHHH----hCCCe----EEehh--hhhc-cCCceEEEee---
Confidence 4689999999999999999875 46999999999965544 44654 22222 2222 2357999974
Q ss_pred CCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 416 CSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 416 csg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
.-++.|. .....+|+.+.+.|+|+|+++.+
T Consensus 158 ---LNvLDRc----------------~~P~~LL~~i~~~l~p~G~lilA 187 (265)
T PF05219_consen 158 ---LNVLDRC----------------DRPLTLLRDIRRALKPNGRLILA 187 (265)
T ss_pred ---hhhhhcc----------------CCHHHHHHHHHHHhCCCCEEEEE
Confidence 2223232 12345799999999999998855
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00017 Score=73.67 Aligned_cols=72 Identities=25% Similarity=0.248 Sum_probs=54.7
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEE
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 412 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~ 412 (528)
+.+|.++||+||+|||+|-.++++ +.+|+|||..+-. ..+. . +.+|+.+..|...+.+. .+.+|.|+|
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~r---G~~V~AVD~g~l~-----~~L~--~-~~~V~h~~~d~fr~~p~-~~~vDwvVc 276 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRR---GMFVTAVDNGPMA-----QSLM--D-TGQVEHLRADGFKFRPP-RKNVDWLVC 276 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHc---CCEEEEEechhcC-----Hhhh--C-CCCEEEEeccCcccCCC-CCCCCEEEE
Confidence 357999999999999999999986 4699999965421 2221 1 33588888888776543 468999999
Q ss_pred cCCC
Q 009708 413 DAPC 416 (528)
Q Consensus 413 D~Pc 416 (528)
|.-|
T Consensus 277 Dmve 280 (357)
T PRK11760 277 DMVE 280 (357)
T ss_pred eccc
Confidence 9887
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0001 Score=74.41 Aligned_cols=146 Identities=13% Similarity=0.036 Sum_probs=77.2
Q ss_pred CCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHc-CCCccEEEEcCccc----cccccCCCCCCEE
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLH-QVNSVIRTIHADLR----TFADNSTVKCDKV 410 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~-g~~~~i~~~~~D~~----~~~~~~~~~fD~V 410 (528)
.-++||+|+|.-.+=-.|+..+. +.+++|.|+++..++.|++|++++ ++.++|+++...-. .......+.||..
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dft 181 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFT 181 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEE
Confidence 34799999999876544444444 589999999999999999999999 99988988755322 1111224689999
Q ss_pred EEcCCCCCCccc------cCC------------chhhcc-CCHHHHHH--HHHHHHHHHHHHhccCcCCCEEEEEcCCCC
Q 009708 411 LLDAPCSGLGVL------SKR------------ADLRWN-RRLEDMEE--LKILQDELLDAASLLVKPGGVLVYSTCSID 469 (528)
Q Consensus 411 l~D~Pcsg~G~~------~~~------------pd~~~~-~~~~~~~~--l~~~q~~lL~~a~~~LkpGG~LvysTcs~~ 469 (528)
+||||...+.-- ++. |..-.. ...+-..+ =...-.+++++...+-+ ...+| |+=+.
T Consensus 182 mCNPPFy~s~~e~~~~~~~k~~nl~~~~~~~~~p~~~~~G~~~El~~~GGEv~FV~rMI~ES~~~~~--~v~Wf-Tsmvg 258 (299)
T PF05971_consen 182 MCNPPFYSSQEEAEAGTERKWKNLGRPNKKRSPPKLNFTGQSNELWCEGGEVAFVKRMIKESLQLKD--QVRWF-TSMVG 258 (299)
T ss_dssp EE-----SS--------------------------------TTTTHHHHTHHHHHHHHHHHHHHHGG--GEEEE-EEEES
T ss_pred ecCCccccChhhhcccccccccccccccccccCccccCCCCcceEEcCCccHHHHHHHHHHHHHhCC--CcEEE-eeccc
Confidence 999999654310 110 100000 00000000 01222345666555422 34444 55677
Q ss_pred chhhHHHHHHHHhhCC
Q 009708 470 PEENEERVEAFLLRHP 485 (528)
Q Consensus 470 ~~Ene~~v~~~l~~~~ 485 (528)
..+|-..+...|++..
T Consensus 259 KkssL~~l~~~L~~~~ 274 (299)
T PF05971_consen 259 KKSSLKPLKKELKKLG 274 (299)
T ss_dssp SGGGHHHHHHHHHHTT
T ss_pred CcccHHHHHHHHHhcC
Confidence 8888888888888763
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=97.72 E-value=7.6e-05 Score=71.27 Aligned_cols=152 Identities=26% Similarity=0.343 Sum_probs=78.8
Q ss_pred cceeEeecchHHHHHH-hc-CCCCCCeEEEeCCccchHHHHHHHHc---CCCcEEEEEcCChHHHHHHHHHHHHcCCCcc
Q 009708 314 EGLCAVQDESAGLVVA-VV-DPQPGQSIVDCCAAPGGKTLYMASCL---SGQGLVYAIDINKGRLRILNETAKLHQVNSV 388 (528)
Q Consensus 314 ~G~~~~Qd~~s~l~~~-~l-~~~~g~~VLDl~aG~G~kt~~la~~~---~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~ 388 (528)
.|.-.+|.+.=+++.. ++ ..+| +.|+++|...||-++..|..+ ++.++|++||++....... ..+.+.+..+
T Consensus 10 ~G~pi~q~P~Dm~~~qeli~~~kP-d~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~--a~e~hp~~~r 86 (206)
T PF04989_consen 10 LGRPIIQYPQDMVAYQELIWELKP-DLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRK--AIESHPMSPR 86 (206)
T ss_dssp TTEEESS-HHHHHHHHHHHHHH---SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG----TT
T ss_pred CCeehhcCHHHHHHHHHHHHHhCC-CeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchH--HHhhccccCc
Confidence 4555666554322221 11 2333 599999999999999887644 4678999999965444221 1222344567
Q ss_pred EEEEcCccccccccC-------CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEE
Q 009708 389 IRTIHADLRTFADNS-------TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVL 461 (528)
Q Consensus 389 i~~~~~D~~~~~~~~-------~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~L 461 (528)
|+++++|..+..... .....+|+.|.--+.. ++ ...|+....++++|+++
T Consensus 87 I~~i~Gds~d~~~~~~v~~~~~~~~~vlVilDs~H~~~----------------hv-------l~eL~~y~plv~~G~Y~ 143 (206)
T PF04989_consen 87 ITFIQGDSIDPEIVDQVRELASPPHPVLVILDSSHTHE----------------HV-------LAELEAYAPLVSPGSYL 143 (206)
T ss_dssp EEEEES-SSSTHHHHTSGSS----SSEEEEESS----S----------------SH-------HHHHHHHHHT--TT-EE
T ss_pred eEEEECCCCCHHHHHHHHHhhccCCceEEEECCCccHH----------------HH-------HHHHHHhCccCCCCCEE
Confidence 999999987643211 2345588888654221 11 22367788999999998
Q ss_pred EEEcCC-------------CCchhh-HHHHHHHHhhCCCceEec
Q 009708 462 VYSTCS-------------IDPEEN-EERVEAFLLRHPEFSIDP 491 (528)
Q Consensus 462 vysTcs-------------~~~~En-e~~v~~~l~~~~~~~~~~ 491 (528)
|.-.-. +.+..| ...|.+||++|++|++..
T Consensus 144 IVeDt~~~~~~~~~~~~~~w~~g~~p~~av~~fL~~~~~f~iD~ 187 (206)
T PF04989_consen 144 IVEDTIIEDWPESWFPDRPWGPGNNPKTAVKEFLAEHPDFEIDT 187 (206)
T ss_dssp EETSHHHHHHHHS-------------HHHHHHHHHTTTTEEEET
T ss_pred EEEeccccccccccccccchhhhhHHHHHHHHHHHHCCCcEecc
Confidence 743211 222222 356889999999998876
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.70 E-value=8.1e-05 Score=71.87 Aligned_cols=107 Identities=19% Similarity=0.266 Sum_probs=72.4
Q ss_pred eEEEeCCccchHHHHHHHHcCCC--cEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccc---cCCCCCCEEEE
Q 009708 338 SIVDCCAAPGGKTLYMASCLSGQ--GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD---NSTVKCDKVLL 412 (528)
Q Consensus 338 ~VLDl~aG~G~kt~~la~~~~~~--~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~---~~~~~fD~Vl~ 412 (528)
+||++|||.|....-+.+- .+. -+|+|+|.|+.+++..+++..... .++.....|+..-.. ...+.+|.|.+
T Consensus 74 ~ilEvGCGvGNtvfPll~~-~~n~~l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~Dlt~~~~~~~~~~~svD~it~ 150 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKT-SPNNRLKVYACDFSPRAIELVKKSSGYDE--SRVEAFVWDLTSPSLKEPPEEGSVDIITL 150 (264)
T ss_pred hheeeccCCCcccchhhhc-CCCCCeEEEEcCCChHHHHHHHhccccch--hhhcccceeccchhccCCCCcCccceEEE
Confidence 8999999999999888775 333 689999999999999999876654 235555556654321 12467887653
Q ss_pred cCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 413 DAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 413 D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
==--|. -+| +. +...+++..++|||||.|++..--
T Consensus 151 IFvLSA-----i~p--------ek-------~~~a~~nl~~llKPGG~llfrDYg 185 (264)
T KOG2361|consen 151 IFVLSA-----IHP--------EK-------MQSVIKNLRTLLKPGGSLLFRDYG 185 (264)
T ss_pred EEEEec-----cCh--------HH-------HHHHHHHHHHHhCCCcEEEEeecc
Confidence 111111 111 22 234588999999999999976543
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0011 Score=66.22 Aligned_cols=104 Identities=10% Similarity=-0.028 Sum_probs=74.3
Q ss_pred cCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHc--CC-CccEEEEcCccccccccCCCCC
Q 009708 331 VDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLH--QV-NSVIRTIHADLRTFADNSTVKC 407 (528)
Q Consensus 331 l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~--g~-~~~i~~~~~D~~~~~~~~~~~f 407 (528)
..+.| .+||=+|.|-|+....+++. + .+|+-||+++..++.+++.+... ++ +.+++++.. +.....++|
T Consensus 69 ~h~~p-k~VLIiGGGDGg~~REvLkh--~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~----~~~~~~~~f 140 (262)
T PRK00536 69 TKKEL-KEVLIVDGFDLELAHQLFKY--D-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ----LLDLDIKKY 140 (262)
T ss_pred hCCCC-CeEEEEcCCchHHHHHHHCc--C-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh----hhhccCCcC
Confidence 33443 69999999999999999986 2 49999999999999999954432 22 245666641 222223689
Q ss_pred CEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCC
Q 009708 408 DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSID 469 (528)
Q Consensus 408 D~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~ 469 (528)
|+||+|-..+ .++.+.+.+.|+|||++|.-+.|..
T Consensus 141 DVIIvDs~~~---------------------------~~fy~~~~~~L~~~Gi~v~Qs~sp~ 175 (262)
T PRK00536 141 DLIICLQEPD---------------------------IHKIDGLKRMLKEDGVFISVAKHPL 175 (262)
T ss_pred CEEEEcCCCC---------------------------hHHHHHHHHhcCCCcEEEECCCCcc
Confidence 9999993220 2346778899999999997555533
|
|
| >TIGR00497 hsdM type I restriction system adenine methylase (hsdM) | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00022 Score=78.11 Aligned_cols=150 Identities=14% Similarity=0.097 Sum_probs=95.3
Q ss_pred ccceeEeecchHHHHHHhcCCC--CCCeEEEeCCccchHHHHHHHHcC---CCcEEEEEcCChHHHHHHHHHHHHcCCCc
Q 009708 313 KEGLCAVQDESAGLVVAVVDPQ--PGQSIVDCCAAPGGKTLYMASCLS---GQGLVYAIDINKGRLRILNETAKLHQVNS 387 (528)
Q Consensus 313 ~~G~~~~Qd~~s~l~~~~l~~~--~g~~VLDl~aG~G~kt~~la~~~~---~~~~v~avD~s~~~l~~~~~n~~~~g~~~ 387 (528)
..|.++....-+.+++.++.+. |+..|.|+|||+|++.......+. ....+++.+....+...++.|+..++...
T Consensus 193 ~~g~~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~ 272 (501)
T TIGR00497 193 SGGEFFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDY 272 (501)
T ss_pred cCceeeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCc
Confidence 3677888777788888887764 678999999999998876554432 12468999999999999999988877642
Q ss_pred -cEEEEcCcccccccc-CCCCCCEEEEcCCCCCC---ccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEE
Q 009708 388 -VIRTIHADLRTFADN-STVKCDKVLLDAPCSGL---GVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV 462 (528)
Q Consensus 388 -~i~~~~~D~~~~~~~-~~~~fD~Vl~D~Pcsg~---G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lv 462 (528)
......+|....... ...+||.|+.|||.+.. |......+..+......+..+......++.++...|++||+..
T Consensus 273 ~t~~~~~~dtl~~~d~~~~~~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~a 352 (501)
T TIGR00497 273 ANFNIINADTLTTKEWENENGFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAA 352 (501)
T ss_pred cccCcccCCcCCCccccccccCCEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEE
Confidence 123334444332111 13569999999999653 1111100111100000111122335567888999999999744
|
Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)). |
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=97.63 E-value=8.2e-05 Score=75.06 Aligned_cols=78 Identities=21% Similarity=0.310 Sum_probs=60.4
Q ss_pred eEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC-CCCCCEEEEcCCC
Q 009708 338 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS-TVKCDKVLLDAPC 416 (528)
Q Consensus 338 ~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~-~~~fD~Vl~D~Pc 416 (528)
+|+|++||.||.+..+.+. +-..++++|+++.+++..+.|... .++++|+.++.... ...+|+|+.+|||
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~--G~~~v~a~e~~~~a~~~~~~N~~~-------~~~~~Di~~~~~~~~~~~~D~l~~gpPC 72 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA--GFEIVAANEIDKSAAETYEANFPN-------KLIEGDITKIDEKDFIPDIDLLTGGFPC 72 (275)
T ss_pred cEEEEccCcchHHHHHHHc--CCEEEEEEeCCHHHHHHHHHhCCC-------CCccCccccCchhhcCCCCCEEEeCCCC
Confidence 6899999999998877654 344688999999999998887632 14677887765433 4579999999999
Q ss_pred CCCccccC
Q 009708 417 SGLGVLSK 424 (528)
Q Consensus 417 sg~G~~~~ 424 (528)
.+....++
T Consensus 73 q~fS~ag~ 80 (275)
T cd00315 73 QPFSIAGK 80 (275)
T ss_pred hhhhHHhh
Confidence 87766554
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00082 Score=68.46 Aligned_cols=155 Identities=13% Similarity=0.160 Sum_probs=101.3
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHH--HcC---C-CccEEEEcCccccccccCCCCC
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAK--LHQ---V-NSVIRTIHADLRTFADNSTVKC 407 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~--~~g---~-~~~i~~~~~D~~~~~~~~~~~f 407 (528)
...++||=+|-|-|--..++.+. +.-.+|+-||.+|++++.++.+.. ..+ . +.+++++..|+.++.....+.|
T Consensus 288 ~~a~~vLvlGGGDGLAlRellky-P~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKY-PQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhC-CCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence 34578999999999888888775 546799999999999999995433 222 1 3479999999999987777899
Q ss_pred CEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC-CCchhhHHHHHHHHhhCCC
Q 009708 408 DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS-IDPEENEERVEAFLLRHPE 486 (528)
Q Consensus 408 D~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs-~~~~Ene~~v~~~l~~~~~ 486 (528)
|.||+|-|--.+-.+. .+.. .++-..+.+.|+++|.+|.-.-| +...+---.|..-+++- +
T Consensus 367 D~vIVDl~DP~tps~~------------rlYS-----~eFY~ll~~~l~e~Gl~VvQags~y~tp~vfw~i~aTik~A-G 428 (508)
T COG4262 367 DVVIVDLPDPSTPSIG------------RLYS-----VEFYRLLSRHLAETGLMVVQAGSPYFTPRVFWRIDATIKSA-G 428 (508)
T ss_pred cEEEEeCCCCCCcchh------------hhhh-----HHHHHHHHHhcCcCceEEEecCCCccCCceeeeehhHHHhC-c
Confidence 9999997753221111 1111 24566678889999999865554 33323222333444443 4
Q ss_pred ceEecCCCCCCCccccCCceEEE
Q 009708 487 FSIDPADGLVPSDFVTKHGFFFS 509 (528)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~g~~~~ 509 (528)
+...|.+...|. +...||.-.
T Consensus 429 ~~~~Pyhv~VPT--FGeWGf~l~ 449 (508)
T COG4262 429 YRVWPYHVHVPT--FGEWGFILA 449 (508)
T ss_pred ceeeeeEEecCc--ccccceeec
Confidence 666555444432 234455433
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00012 Score=73.98 Aligned_cols=109 Identities=18% Similarity=0.167 Sum_probs=71.2
Q ss_pred CeEEEeCCccchHHHHHH----HHcCC---CcEEEEEcCChHHHHHHHHHH------------------HHc-----C--
Q 009708 337 QSIVDCCAAPGGKTLYMA----SCLSG---QGLVYAIDINKGRLRILNETA------------------KLH-----Q-- 384 (528)
Q Consensus 337 ~~VLDl~aG~G~kt~~la----~~~~~---~~~v~avD~s~~~l~~~~~n~------------------~~~-----g-- 384 (528)
-+|+.+||++|-=.-.+| +.++. ..+|+|.|+|+..++.|++-. .+. |
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~ 196 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLV 196 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceE
Confidence 589999999997443332 32221 357999999999999988751 000 1
Q ss_pred -----CCccEEEEcCccccccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCC
Q 009708 385 -----VNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459 (528)
Q Consensus 385 -----~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG 459 (528)
+.+.|+|.+.|+.+......+.||+|+|- . ++ +.--...|.++++...+.|+|||
T Consensus 197 ~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cR----N--vl--------------iyF~~~~~~~vl~~l~~~L~pgG 256 (287)
T PRK10611 197 RVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCR----N--VM--------------IYFDKTTQERILRRFVPLLKPDG 256 (287)
T ss_pred EEChHHHccCEEEcccCCCCCCccCCCcceeeHh----h--HH--------------hcCCHHHHHHHHHHHHHHhCCCc
Confidence 22457777888776322224689999961 1 00 00012356778999999999999
Q ss_pred EEEEEc
Q 009708 460 VLVYST 465 (528)
Q Consensus 460 ~LvysT 465 (528)
+|+...
T Consensus 257 ~L~lG~ 262 (287)
T PRK10611 257 LLFAGH 262 (287)
T ss_pred EEEEeC
Confidence 998654
|
|
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.59 E-value=7e-05 Score=70.10 Aligned_cols=70 Identities=27% Similarity=0.260 Sum_probs=60.4
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEE
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 412 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~ 412 (528)
.|.+|||+|+|+|..++..+.. +...|++.|+.|.....++-|++.+|+. |.+.+.|... . +..||+||+
T Consensus 79 rgkrVLd~gagsgLvaIAaa~a--GA~~v~a~d~~P~~~~ai~lNa~angv~--i~~~~~d~~g-~---~~~~Dl~La 148 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARA--GAAEVVAADIDPWLEQAIRLNAAANGVS--ILFTHADLIG-S---PPAFDLLLA 148 (218)
T ss_pred ccceeeecccccChHHHHHHHh--hhHHHHhcCCChHHHHHhhcchhhccce--eEEeeccccC-C---CcceeEEEe
Confidence 3889999999999999888764 5678999999999999999999999976 7888888866 2 357999986
|
|
| >KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00011 Score=79.06 Aligned_cols=108 Identities=25% Similarity=0.319 Sum_probs=73.9
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccc----cccc---CCC
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT----FADN---STV 405 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~----~~~~---~~~ 405 (528)
++++..||||||+||++...+++.|+.++-|+|||+-|-.. +++ +..++.|++. +... ...
T Consensus 42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pikp-----------~~~-c~t~v~dIttd~cr~~l~k~l~t~ 109 (780)
T KOG1098|consen 42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIKP-----------IPN-CDTLVEDITTDECRSKLRKILKTW 109 (780)
T ss_pred ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeeccc-----------CCc-cchhhhhhhHHHHHHHHHHHHHhC
Confidence 45788999999999999999999999888999999976442 343 3334445432 1110 124
Q ss_pred CCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEE
Q 009708 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463 (528)
Q Consensus 406 ~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvy 463 (528)
+.|+||.|...+-.|. |. .+...-+.+-..-|+-|..+|..||.+|-
T Consensus 110 ~advVLhDgapnVg~~--------w~---~DA~~q~~L~l~al~LA~~~l~~~g~fvt 156 (780)
T KOG1098|consen 110 KADVVLHDGAPNVGGN--------WV---QDAFQQACLTLRALKLATEFLAKGGTFVT 156 (780)
T ss_pred CCcEEeecCCCccchh--------HH---HHHHHhhHHHHHHHHHHHHHHHhcCcccc
Confidence 6799999954432232 22 34444455556678889999999999873
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00089 Score=68.76 Aligned_cols=112 Identities=13% Similarity=0.091 Sum_probs=75.8
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcCC---CcEEEEEcCChHHHHHHHHHHHHcCCCc-cEEEEcCccccccccC-----C
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLSG---QGLVYAIDINKGRLRILNETAKLHQVNS-VIRTIHADLRTFADNS-----T 404 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~~---~~~v~avD~s~~~l~~~~~n~~~~g~~~-~i~~~~~D~~~~~~~~-----~ 404 (528)
.++..++|+|||.|.|+..+.+.+.. ..+.+++|+|...++.+.+++....+++ .+.-+++|..+..... .
T Consensus 75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~ 154 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENR 154 (319)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhccccccc
Confidence 35678999999999999988877643 3468999999999999999988444443 2344888886642211 1
Q ss_pred CCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhc-cCcCCCEEEEE
Q 009708 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASL-LVKPGGVLVYS 464 (528)
Q Consensus 405 ~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~-~LkpGG~Lvys 464 (528)
....+|+. |-|..|- .++... ..+|+...+ .|+|||.|++.
T Consensus 155 ~~~r~~~f--lGSsiGN----------f~~~ea-------~~fL~~~~~~~l~~~d~lLiG 196 (319)
T TIGR03439 155 SRPTTILW--LGSSIGN----------FSRPEA-------AAFLAGFLATALSPSDSFLIG 196 (319)
T ss_pred CCccEEEE--eCccccC----------CCHHHH-------HHHHHHHHHhhCCCCCEEEEe
Confidence 23455553 2333333 222222 345888888 99999999864
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=97.51 E-value=7.4e-05 Score=75.84 Aligned_cols=89 Identities=26% Similarity=0.412 Sum_probs=64.1
Q ss_pred HHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc----
Q 009708 327 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---- 402 (528)
Q Consensus 327 ~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---- 402 (528)
+.+.|.++++..++|+--|.||-|..+++.+++ ++|+|+|.++.+++.++++++.. .+++.++++++.++...
T Consensus 12 vl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~-~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F~~l~~~l~~~ 88 (310)
T PF01795_consen 12 VLEALNPKPGGIYVDCTFGGGGHSKAILEKLPN-GRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNFSNLDEYLKEL 88 (310)
T ss_dssp HHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT--EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-GGGHHHHHHHT
T ss_pred HHHhhCcCCCceEEeecCCcHHHHHHHHHhCCC-CeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccHHHHHHHHHHc
Confidence 456677889999999999999999999998776 99999999999999998877654 45799999998876432
Q ss_pred -CCCCCCEEEEcCCCCC
Q 009708 403 -STVKCDKVLLDAPCSG 418 (528)
Q Consensus 403 -~~~~fD~Vl~D~Pcsg 418 (528)
...++|.||+|.=+|+
T Consensus 89 ~~~~~~dgiL~DLGvSS 105 (310)
T PF01795_consen 89 NGINKVDGILFDLGVSS 105 (310)
T ss_dssp TTTS-EEEEEEE-S--H
T ss_pred cCCCccCEEEEccccCH
Confidence 1357999999976654
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00033 Score=62.98 Aligned_cols=59 Identities=25% Similarity=0.389 Sum_probs=51.5
Q ss_pred eEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccc
Q 009708 338 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 398 (528)
Q Consensus 338 ~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~ 398 (528)
+|||+|||.|..+..++.. .+.++|+++|.++..++.+++|++.+++++ +++++..+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~-~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~-v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARK-GAEGRVIAFEPLPDAYEILEENVKLNNLPN-VVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHh-CCCCEEEEEecCHHHHHHHHHHHHHcCCCc-EEEEEeeeeC
Confidence 4899999999999999886 445699999999999999999999999876 8888876654
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0027 Score=60.55 Aligned_cols=127 Identities=15% Similarity=0.193 Sum_probs=70.0
Q ss_pred chHHHHHHhcCCCC---CCeEEEeCCccchHHHHHHHHcCC-CcEEEEEcCChHHHHHHHHHHHHcCCC-----------
Q 009708 322 ESAGLVVAVVDPQP---GQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVN----------- 386 (528)
Q Consensus 322 ~~s~l~~~~l~~~~---g~~VLDl~aG~G~kt~~la~~~~~-~~~v~avD~s~~~l~~~~~n~~~~g~~----------- 386 (528)
.++.+....+...+ +-++.|.|||.|...+.+.-+-.+ -..|+|-|+++..++.+++|+..+...
T Consensus 35 LAsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~ 114 (246)
T PF11599_consen 35 LASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRE 114 (246)
T ss_dssp HHHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHH
Confidence 34444444444332 337999999999988877654221 237999999999999999887532111
Q ss_pred ------------------------------ccEEEEcCccccccc----cCCCCCCEEEEcCCCCCCccccCCchhhccC
Q 009708 387 ------------------------------SVIRTIHADLRTFAD----NSTVKCDKVLLDAPCSGLGVLSKRADLRWNR 432 (528)
Q Consensus 387 ------------------------------~~i~~~~~D~~~~~~----~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~ 432 (528)
--..+.++|+++... ......|+|+.|.|+...- .|.-
T Consensus 115 ~~e~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t--------~W~g 186 (246)
T PF11599_consen 115 LYEQYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMT--------SWQG 186 (246)
T ss_dssp HHHHH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSS--------STTS
T ss_pred HHHHcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccc--------cccC
Confidence 014566777776322 1133479999999994322 3532
Q ss_pred --CHHHHHHHHHHHHHHHHHHhccCcCCCEEEE
Q 009708 433 --RLEDMEELKILQDELLDAASLLVKPGGVLVY 463 (528)
Q Consensus 433 --~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvy 463 (528)
+..-+ .++|+.....|-++++++.
T Consensus 187 ~~~~~p~-------~~ml~~l~~vLp~~sVV~v 212 (246)
T PF11599_consen 187 EGSGGPV-------AQMLNSLAPVLPERSVVAV 212 (246)
T ss_dssp ---HHHH-------HHHHHHHHCCS-TT-EEEE
T ss_pred CCCCCcH-------HHHHHHHHhhCCCCcEEEE
Confidence 22222 3469999999954555554
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0004 Score=66.70 Aligned_cols=104 Identities=22% Similarity=0.191 Sum_probs=69.2
Q ss_pred CCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAP 415 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~P 415 (528)
-.+.||+|||-|..|-.+... --.+|-.||..+..++.|++.+...+ ....++++.-+.++.+. ..+||+|.+- -
T Consensus 56 ~~~alDcGAGIGRVTk~lLl~--~f~~VDlVEp~~~Fl~~a~~~l~~~~-~~v~~~~~~gLQ~f~P~-~~~YDlIW~Q-W 130 (218)
T PF05891_consen 56 FNRALDCGAGIGRVTKGLLLP--VFDEVDLVEPVEKFLEQAKEYLGKDN-PRVGEFYCVGLQDFTPE-EGKYDLIWIQ-W 130 (218)
T ss_dssp -SEEEEET-TTTHHHHHTCCC--C-SEEEEEES-HHHHHHHHHHTCCGG-CCEEEEEES-GGG-----TT-EEEEEEE-S
T ss_pred cceEEecccccchhHHHHHHH--hcCEeEEeccCHHHHHHHHHHhcccC-CCcceEEecCHhhccCC-CCcEeEEEeh-H
Confidence 458999999999999877543 34689999999999999987654421 23457788878777654 3689999973 2
Q ss_pred CCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEE
Q 009708 416 CSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463 (528)
Q Consensus 416 csg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvy 463 (528)
|. | ..+.+++-. +|+.+...|+|||.||.
T Consensus 131 ~l--g----------hLTD~dlv~-------fL~RCk~~L~~~G~Ivv 159 (218)
T PF05891_consen 131 CL--G----------HLTDEDLVA-------FLKRCKQALKPNGVIVV 159 (218)
T ss_dssp -G--G----------GS-HHHHHH-------HHHHHHHHEEEEEEEEE
T ss_pred hh--c----------cCCHHHHHH-------HHHHHHHhCcCCcEEEE
Confidence 21 1 245556544 59999999999999884
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0025 Score=61.15 Aligned_cols=124 Identities=17% Similarity=0.232 Sum_probs=96.7
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDA 414 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~ 414 (528)
.+.++.|+||--|..++++.+. +....+++.|+++.-++.+.+|++++++..++++..+|....... ...+|.|++
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~-~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~-~d~~d~ivI-- 91 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKN-NPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLEL-EDEIDVIVI-- 91 (226)
T ss_pred cCCceeeccCchhHhHHHHHhc-CCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCc-cCCcCEEEE--
Confidence 4566999999999999999886 456789999999999999999999999999999999999664432 347899887
Q ss_pred CCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHHHhhCCCceEe
Q 009708 415 PCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSID 490 (528)
Q Consensus 415 Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~l~~~~~~~~~ 490 (528)
.|.|- . +-.++|++....|+.--++| +.|..+...+..||..+. |++.
T Consensus 92 --AGMGG-------------~-------lI~~ILee~~~~l~~~~rlI-----LQPn~~~~~LR~~L~~~~-~~I~ 139 (226)
T COG2384 92 --AGMGG-------------T-------LIREILEEGKEKLKGVERLI-----LQPNIHTYELREWLSANS-YEIK 139 (226)
T ss_pred --eCCcH-------------H-------HHHHHHHHhhhhhcCcceEE-----ECCCCCHHHHHHHHHhCC-ceee
Confidence 45554 1 22456888888888545666 457777778889998873 4443
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0019 Score=58.30 Aligned_cols=81 Identities=19% Similarity=0.152 Sum_probs=61.2
Q ss_pred CCCCeEEEeCCccchHHHHHHHHc---CCCcEEEEEcCChHHHHHHHHHHHHcC--CCccEEEEcCccccccccCCCCCC
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCL---SGQGLVYAIDINKGRLRILNETAKLHQ--VNSVIRTIHADLRTFADNSTVKCD 408 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~---~~~~~v~avD~s~~~l~~~~~n~~~~g--~~~~i~~~~~D~~~~~~~~~~~fD 408 (528)
.+...|+|+|||-|..+..++..+ ....+|+++|.++..++.+.+..+..+ ....+.+..++...... ....+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 101 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESS--SDPPD 101 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcc--cCCCe
Confidence 567799999999999999999843 245799999999999999999999988 53446666655543322 24566
Q ss_pred EEEEcCCC
Q 009708 409 KVLLDAPC 416 (528)
Q Consensus 409 ~Vl~D~Pc 416 (528)
.++.=-.|
T Consensus 102 ~~vgLHaC 109 (141)
T PF13679_consen 102 ILVGLHAC 109 (141)
T ss_pred EEEEeecc
Confidence 77665666
|
|
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00051 Score=66.98 Aligned_cols=90 Identities=22% Similarity=0.263 Sum_probs=60.2
Q ss_pred HHHHHHhcCCCCCC--eEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCC--C------ccEEEEc
Q 009708 324 AGLVVAVVDPQPGQ--SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQV--N------SVIRTIH 393 (528)
Q Consensus 324 s~l~~~~l~~~~g~--~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~--~------~~i~~~~ 393 (528)
...++.++++++|. +|||+-||-|.-++.+|.. +++|+++|.||-....++.-+++..- + .+|++++
T Consensus 62 ~~~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~---G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~ 138 (234)
T PF04445_consen 62 GDPLAKAVGLKPGMRPSVLDATAGLGRDAFVLASL---GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIH 138 (234)
T ss_dssp GSHHHHHTT-BTTB---EEETT-TTSHHHHHHHHH---T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEE
T ss_pred ccHHHHHhCCCCCCCCEEEECCCcchHHHHHHHcc---CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEc
Confidence 34566677777764 8999999999999999875 46899999999998888766555321 1 3699999
Q ss_pred CccccccccCCCCCCEEEEcCCC
Q 009708 394 ADLRTFADNSTVKCDKVLLDAPC 416 (528)
Q Consensus 394 ~D~~~~~~~~~~~fD~Vl~D~Pc 416 (528)
+|..++......+||+|.+||-.
T Consensus 139 ~d~~~~L~~~~~s~DVVY~DPMF 161 (234)
T PF04445_consen 139 GDALEYLRQPDNSFDVVYFDPMF 161 (234)
T ss_dssp S-CCCHCCCHSS--SEEEE--S-
T ss_pred CCHHHHHhhcCCCCCEEEECCCC
Confidence 99999876446789999999987
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00032 Score=67.07 Aligned_cols=109 Identities=18% Similarity=0.190 Sum_probs=63.4
Q ss_pred CeEEEeCCccchHHHHHH----HHcC---C-CcEEEEEcCChHHHHHHHHH--------------HHHc-----C-----
Q 009708 337 QSIVDCCAAPGGKTLYMA----SCLS---G-QGLVYAIDINKGRLRILNET--------------AKLH-----Q----- 384 (528)
Q Consensus 337 ~~VLDl~aG~G~kt~~la----~~~~---~-~~~v~avD~s~~~l~~~~~n--------------~~~~-----g----- 384 (528)
-+|+.+||++|-=+-.+| +... + .-+|+|.|+|+..++.|++- .+++ |
T Consensus 33 lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~v 112 (196)
T PF01739_consen 33 LRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGYRV 112 (196)
T ss_dssp EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCTTE
T ss_pred eEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCceeE
Confidence 489999999997443332 3111 1 34899999999999998762 1111 1
Q ss_pred ---CCccEEEEcCccccccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEE
Q 009708 385 ---VNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVL 461 (528)
Q Consensus 385 ---~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~L 461 (528)
+.+.|+|.+.|+.+ .....+.||+|+| -..-+ .. -.+.|.++++.....|+|||+|
T Consensus 113 ~~~lr~~V~F~~~NL~~-~~~~~~~fD~I~C----RNVlI---------YF-------~~~~~~~vl~~l~~~L~pgG~L 171 (196)
T PF01739_consen 113 KPELRKMVRFRRHNLLD-PDPPFGRFDLIFC----RNVLI---------YF-------DPETQQRVLRRLHRSLKPGGYL 171 (196)
T ss_dssp -HHHHTTEEEEE--TT--S------EEEEEE-----SSGG---------GS--------HHHHHHHHHHHGGGEEEEEEE
T ss_pred ChHHcCceEEEecccCC-CCcccCCccEEEe----cCEEE---------Ee-------CHHHHHHHHHHHHHHcCCCCEE
Confidence 01357888888887 2223478999996 21100 11 1245677899999999999999
Q ss_pred EEEcC
Q 009708 462 VYSTC 466 (528)
Q Consensus 462 vysTc 466 (528)
+....
T Consensus 172 ~lG~s 176 (196)
T PF01739_consen 172 FLGHS 176 (196)
T ss_dssp EE-TT
T ss_pred EEecC
Confidence 97543
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00048 Score=66.70 Aligned_cols=96 Identities=30% Similarity=0.413 Sum_probs=65.4
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC-CCCCCEEEEc
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS-TVKCDKVLLD 413 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~-~~~fD~Vl~D 413 (528)
+|..+||+||.+||+|-.+.+. +..+|+|+|..-..+..--++ . +..+..-..+++.+.+.. .+..|.|++|
T Consensus 79 k~kv~LDiGsSTGGFTd~lLq~--gAk~VyavDVG~~Ql~~kLR~----d-~rV~~~E~tN~r~l~~~~~~~~~d~~v~D 151 (245)
T COG1189 79 KGKVVLDIGSSTGGFTDVLLQR--GAKHVYAVDVGYGQLHWKLRN----D-PRVIVLERTNVRYLTPEDFTEKPDLIVID 151 (245)
T ss_pred CCCEEEEecCCCccHHHHHHHc--CCcEEEEEEccCCccCHhHhc----C-CcEEEEecCChhhCCHHHcccCCCeEEEE
Confidence 5789999999999999999885 577999999987655432111 1 122334455666554432 4578999999
Q ss_pred CCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEE
Q 009708 414 APCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV 462 (528)
Q Consensus 414 ~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lv 462 (528)
....+. ..+|..+..+++++|.++
T Consensus 152 vSFISL-------------------------~~iLp~l~~l~~~~~~~v 175 (245)
T COG1189 152 VSFISL-------------------------KLILPALLLLLKDGGDLV 175 (245)
T ss_pred eehhhH-------------------------HHHHHHHHHhcCCCceEE
Confidence 887321 224777777777777666
|
|
| >KOG1227 consensus Putative methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00018 Score=71.36 Aligned_cols=75 Identities=28% Similarity=0.353 Sum_probs=62.9
Q ss_pred CCCeEEEeCCccchHHH-HHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEc
Q 009708 335 PGQSIVDCCAAPGGKTL-YMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLD 413 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~-~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D 413 (528)
.|+.|.||.||-|.+|+ .+... +...|+|+|.+|..++.+++|++.+++..+..++.+|.+...+ ....|.|.+-
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~a--gAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~--~~~AdrVnLG 269 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTA--GAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKP--RLRADRVNLG 269 (351)
T ss_pred ccchhhhhhcccceEEeehhhcc--CccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCc--cccchheeec
Confidence 46899999999999998 55543 5678999999999999999999999998877888888877543 3578888765
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0013 Score=62.04 Aligned_cols=136 Identities=18% Similarity=0.251 Sum_probs=86.5
Q ss_pred CeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcC-------CCccEEEEcCccccccccC--CCCC
Q 009708 337 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQ-------VNSVIRTIHADLRTFADNS--TVKC 407 (528)
Q Consensus 337 ~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g-------~~~~i~~~~~D~~~~~~~~--~~~f 407 (528)
-.+.|+|||-||..+.++... ++.-|+|.||--...+..++++..++ +.| +.+...++..+.+.. .+..
T Consensus 62 vefaDIGCGyGGLlv~Lsp~f-PdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~n-i~vlr~namk~lpn~f~kgqL 139 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKF-PDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPN-ISVLRTNAMKFLPNFFEKGQL 139 (249)
T ss_pred ceEEeeccCccchhhhccccC-ccceeeeehhhHHHHHHHHHHHHHHhcccccccccc-ceeeeccchhhccchhhhccc
Confidence 368999999999999999875 46789999998888888888877766 454 677777777766543 1222
Q ss_pred CEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHHHhhCCCc
Q 009708 408 DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEF 487 (528)
Q Consensus 408 D~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~l~~~~~~ 487 (528)
+.++. | -.+|..+-++. ...-.+..++....-+|++||.++++|-. .|--+-....+.+||-|
T Consensus 140 skmff---~------fpdpHfk~~kh-----k~rii~~~l~~eyay~l~~gg~~ytitDv---~elh~wm~~~~e~hplf 202 (249)
T KOG3115|consen 140 SKMFF---L------FPDPHFKARKH-----KWRIITSTLLSEYAYVLREGGILYTITDV---KELHEWMVKHLEEHPLF 202 (249)
T ss_pred cccee---e------cCChhHhhhhc-----cceeechhHHHHHHhhhhcCceEEEEeeH---HHHHHHHHHHHHhCcHh
Confidence 33322 1 11221111111 11113345688888999999999977632 22222233567778877
Q ss_pred eEec
Q 009708 488 SIDP 491 (528)
Q Consensus 488 ~~~~ 491 (528)
+...
T Consensus 203 e~lt 206 (249)
T KOG3115|consen 203 ERLT 206 (249)
T ss_pred hhcc
Confidence 6543
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0013 Score=65.72 Aligned_cols=107 Identities=17% Similarity=0.147 Sum_probs=69.2
Q ss_pred CeEEEeCCccch----HHHHHHHHcCC----CcEEEEEcCChHHHHHHHHHHHH-----cCCC-----------------
Q 009708 337 QSIVDCCAAPGG----KTLYMASCLSG----QGLVYAIDINKGRLRILNETAKL-----HQVN----------------- 386 (528)
Q Consensus 337 ~~VLDl~aG~G~----kt~~la~~~~~----~~~v~avD~s~~~l~~~~~n~~~-----~g~~----------------- 386 (528)
-+|+-+||++|- .++.+.+.++. ..+|+|.|+|...|+.|+.-.-. -+++
T Consensus 98 irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~ 177 (268)
T COG1352 98 IRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSYR 177 (268)
T ss_pred eEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcEE
Confidence 489999999996 34444454432 46899999999999988752111 1111
Q ss_pred ------ccEEEEcCccccccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCE
Q 009708 387 ------SVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGV 460 (528)
Q Consensus 387 ------~~i~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~ 460 (528)
..|.|-..|+..-.. ..+.||+|+|= +-- +.=-...|.++++.-+..|+|||.
T Consensus 178 v~~~ir~~V~F~~~NLl~~~~-~~~~fD~IfCR-----------NVL---------IYFd~~~q~~il~~f~~~L~~gG~ 236 (268)
T COG1352 178 VKEELRKMVRFRRHNLLDDSP-FLGKFDLIFCR-----------NVL---------IYFDEETQERILRRFADSLKPGGL 236 (268)
T ss_pred EChHHhcccEEeecCCCCCcc-ccCCCCEEEEc-----------ceE---------EeeCHHHHHHHHHHHHHHhCCCCE
Confidence 124455555544332 34679999961 100 011134688899999999999999
Q ss_pred EEEE
Q 009708 461 LVYS 464 (528)
Q Consensus 461 Lvys 464 (528)
|+.-
T Consensus 237 LflG 240 (268)
T COG1352 237 LFLG 240 (268)
T ss_pred EEEc
Confidence 9954
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0057 Score=61.32 Aligned_cols=107 Identities=21% Similarity=0.194 Sum_probs=65.8
Q ss_pred CeEEEeCCccchHHHH-HHHHcCCCcEEEEEcCChHHHHHHHHHHH-HcCCCccEEEEcCccccccccCCCCCCEEEEcC
Q 009708 337 QSIVDCCAAPGGKTLY-MASCLSGQGLVYAIDINKGRLRILNETAK-LHQVNSVIRTIHADLRTFADNSTVKCDKVLLDA 414 (528)
Q Consensus 337 ~~VLDl~aG~G~kt~~-la~~~~~~~~v~avD~s~~~l~~~~~n~~-~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~ 414 (528)
.+|+=+||||=-.|.. +++....+..|+++|+++.+++.+++-++ ..|+..+++++++|....... -..||+|++-+
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~d-l~~~DvV~lAa 200 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYD-LKEYDVVFLAA 200 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG-----SEEEE-T
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccc-cccCCEEEEhh
Confidence 4999999999777754 44433345689999999999999999888 677888899999999876533 25799999843
Q ss_pred CCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 415 PCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 415 Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
-- |+ +.+ --.++|++..+.++||..|+|-+
T Consensus 201 lV---g~-----------~~e-------~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 201 LV---GM-----------DAE-------PKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp T----S----------------------SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred hc---cc-----------ccc-------hHHHHHHHHHhhCCCCcEEEEec
Confidence 33 11 001 12357999999999999999764
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0017 Score=66.48 Aligned_cols=77 Identities=19% Similarity=0.405 Sum_probs=56.6
Q ss_pred eEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC-CCCCCEEEEcCCC
Q 009708 338 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS-TVKCDKVLLDAPC 416 (528)
Q Consensus 338 ~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~-~~~fD~Vl~D~Pc 416 (528)
+|+|+|||.||.++-+-+. +-..+.|+|+++.+.+..+.|.. ....+|+..+.... +..+|+++.-|||
T Consensus 2 ~~~dlFsG~Gg~~~g~~~a--g~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~~l~~~~D~l~ggpPC 71 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQA--GFEVVWAVEIDPDACETYKANFP--------EVICGDITEIDPSDLPKDVDLLIGGPPC 71 (335)
T ss_dssp EEEEET-TTTHHHHHHHHT--TEEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHHHHHHT-SEEEEE---
T ss_pred cEEEEccCccHHHHHHHhc--CcEEEEEeecCHHHHHhhhhccc--------ccccccccccccccccccceEEEeccCC
Confidence 6999999999999888764 23368999999999999999875 45778888765432 1159999999999
Q ss_pred CCCccccC
Q 009708 417 SGLGVLSK 424 (528)
Q Consensus 417 sg~G~~~~ 424 (528)
.+....++
T Consensus 72 Q~fS~ag~ 79 (335)
T PF00145_consen 72 QGFSIAGK 79 (335)
T ss_dssp TTTSTTST
T ss_pred ceEecccc
Confidence 88877664
|
1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... |
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.013 Score=50.82 Aligned_cols=108 Identities=19% Similarity=0.119 Sum_probs=67.7
Q ss_pred EEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccc-cccCC-CCCCEEEEcCCC
Q 009708 339 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF-ADNST-VKCDKVLLDAPC 416 (528)
Q Consensus 339 VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~-~~~~~-~~fD~Vl~D~Pc 416 (528)
++|+|||+|..+ .++........++++|+++.++...+......+... +.+...|.... .+... ..||.+......
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGL-VDFVVADALGGVLPFEDSASFDLVISLLVL 129 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCc-eEEEEeccccCCCCCCCCCceeEEeeeeeh
Confidence 999999999977 444442222389999999999988554443322211 56677776652 22212 368888332222
Q ss_pred CCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCch
Q 009708 417 SGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPE 471 (528)
Q Consensus 417 sg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~ 471 (528)
. +. . ....+..+.+.++|+|.+++........
T Consensus 130 ~------------~~-~----------~~~~~~~~~~~l~~~g~~~~~~~~~~~~ 161 (257)
T COG0500 130 H------------LL-P----------PAKALRELLRVLKPGGRLVLSDLLRDGL 161 (257)
T ss_pred h------------cC-C----------HHHHHHHHHHhcCCCcEEEEEeccCCCC
Confidence 0 00 0 2345888899999999999887765443
|
|
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.03 Score=52.11 Aligned_cols=137 Identities=16% Similarity=0.137 Sum_probs=86.9
Q ss_pred ccchHHHHHHHHcCCCcEEEE--EcCChHHHHH---HHHHHHHcCCCccEEEEcCccccccccC---CCCCCEEEEcCCC
Q 009708 345 APGGKTLYMASCLSGQGLVYA--IDINKGRLRI---LNETAKLHQVNSVIRTIHADLRTFADNS---TVKCDKVLLDAPC 416 (528)
Q Consensus 345 G~G~kt~~la~~~~~~~~v~a--vD~s~~~l~~---~~~n~~~~g~~~~i~~~~~D~~~~~~~~---~~~fD~Vl~D~Pc 416 (528)
|--.++..++...+....|+| .|-.....+. +..|++.+.-.+.......|++.+.... ..+||+|+-+=|+
T Consensus 6 GdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFNFPH 85 (166)
T PF10354_consen 6 GDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFNFPH 85 (166)
T ss_pred cchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEeCCC
Confidence 344566677776553445555 4544444332 3356665533332334566888876544 5789999999999
Q ss_pred CCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHHHhhCCCceEecC
Q 009708 417 SGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPA 492 (528)
Q Consensus 417 sg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~l~~~~~~~~~~~ 492 (528)
.|.|.-. ....+.....+-..++..|..+|+++|.+..+-|.-.|-...++ . .+.++.++.+...
T Consensus 86 ~G~~~~~---------~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py~~W~i-~-~lA~~~gl~l~~~ 150 (166)
T PF10354_consen 86 VGGGSED---------GKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPYDSWNI-E-ELAAEAGLVLVRK 150 (166)
T ss_pred CCCCccc---------hhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCccccH-H-HHHHhcCCEEEEE
Confidence 8744311 22455556667788999999999999999998888777533333 3 3445566766554
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.016 Score=55.28 Aligned_cols=106 Identities=13% Similarity=0.164 Sum_probs=72.3
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC-CCCCCEEEE
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS-TVKCDKVLL 412 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~-~~~fD~Vl~ 412 (528)
..|.+||.+|-|-|.....+-+. ++ .+-+-+|.+|..++.++.+.=+- +.+|.++.+--.+..+.. .+.||-|+-
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~-~p-~~H~IiE~hp~V~krmr~~gw~e--k~nViil~g~WeDvl~~L~d~~FDGI~y 175 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEA-PP-DEHWIIEAHPDVLKRMRDWGWRE--KENVIILEGRWEDVLNTLPDKHFDGIYY 175 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhc-CC-cceEEEecCHHHHHHHHhccccc--ccceEEEecchHhhhccccccCcceeEe
Confidence 56889999999999998887664 43 45677899999998887764332 233666665444333222 456999998
Q ss_pred cCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 413 DAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 413 D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
|.-. ++.+....+-+++.++|||+|.+-|..
T Consensus 176 DTy~----------------------e~yEdl~~~hqh~~rLLkP~gv~SyfN 206 (271)
T KOG1709|consen 176 DTYS----------------------ELYEDLRHFHQHVVRLLKPEGVFSYFN 206 (271)
T ss_pred echh----------------------hHHHHHHHHHHHHhhhcCCCceEEEec
Confidence 7432 122222445679999999999887743
|
|
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.013 Score=59.34 Aligned_cols=121 Identities=21% Similarity=0.251 Sum_probs=78.5
Q ss_pred cccceeEeecchH-HHHHHhcCCCCCCeEEEeCCccch-HHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccE
Q 009708 312 LKEGLCAVQDESA-GLVVAVVDPQPGQSIVDCCAAPGG-KTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVI 389 (528)
Q Consensus 312 ~~~G~~~~Qd~~s-~l~~~~l~~~~g~~VLDl~aG~G~-kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i 389 (528)
|.+|.+ +|..+. ..+.....+++|++||=+||||=| .|...|+.+ +..+|+.+|+++.|++.|++ .|.+. +
T Consensus 146 ~eeGAl-~ePLsV~~HAcr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~-GA~~VVi~d~~~~Rle~Ak~----~Ga~~-~ 218 (354)
T KOG0024|consen 146 FEEGAL-IEPLSVGVHACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAM-GASDVVITDLVANRLELAKK----FGATV-T 218 (354)
T ss_pred hhhccc-ccchhhhhhhhhhcCcccCCeEEEECCcHHHHHHHHHHHHc-CCCcEEEeecCHHHHHHHHH----hCCeE-E
Confidence 445544 334442 233445568899999999999955 555556655 47899999999999998876 67764 2
Q ss_pred EEEcC-c----ccccccc-C-CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEE
Q 009708 390 RTIHA-D----LRTFADN-S-TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV 462 (528)
Q Consensus 390 ~~~~~-D----~~~~~~~-~-~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lv 462 (528)
..... + ....... . ...||..+- |||... -++.|...++.||+++
T Consensus 219 ~~~~~~~~~~~~~~~v~~~~g~~~~d~~~d---CsG~~~-------------------------~~~aai~a~r~gGt~v 270 (354)
T KOG0024|consen 219 DPSSHKSSPQELAELVEKALGKKQPDVTFD---CSGAEV-------------------------TIRAAIKATRSGGTVV 270 (354)
T ss_pred eeccccccHHHHHHHHHhhccccCCCeEEE---ccCchH-------------------------HHHHHHHHhccCCEEE
Confidence 22221 1 1111111 1 245888875 877444 3777889999999988
Q ss_pred EEcCC
Q 009708 463 YSTCS 467 (528)
Q Consensus 463 ysTcs 467 (528)
..-|-
T Consensus 271 lvg~g 275 (354)
T KOG0024|consen 271 LVGMG 275 (354)
T ss_pred EeccC
Confidence 77654
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.005 Score=58.80 Aligned_cols=110 Identities=17% Similarity=0.216 Sum_probs=59.1
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDA 414 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~ 414 (528)
++-.|-|+|||-+..+.. +++.-+|...|.... ... ++.+|+.+.+-. .+.+|+++.-.
T Consensus 72 ~~~viaD~GCGdA~la~~----~~~~~~V~SfDLva~--------------n~~--Vtacdia~vPL~-~~svDv~VfcL 130 (219)
T PF05148_consen 72 KSLVIADFGCGDAKLAKA----VPNKHKVHSFDLVAP--------------NPR--VTACDIANVPLE-DESVDVAVFCL 130 (219)
T ss_dssp TTS-EEEES-TT-HHHHH------S---EEEEESS-S--------------STT--EEES-TTS-S---TT-EEEEEEES
T ss_pred CCEEEEECCCchHHHHHh----cccCceEEEeeccCC--------------CCC--EEEecCccCcCC-CCceeEEEEEh
Confidence 356899999999887633 344457999998532 122 456888776643 47899988722
Q ss_pred CCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcC-CCCchhhHHHHHHHHhhCCCceEec
Q 009708 415 PCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC-SIDPEENEERVEAFLLRHPEFSIDP 491 (528)
Q Consensus 415 Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTc-s~~~~Ene~~v~~~l~~~~~~~~~~ 491 (528)
.- .|+ + ...+|.+|.++||+||.|.++.. |-. ++.+...+.+.+. +|++..
T Consensus 131 SL--MGT--------------n-------~~~fi~EA~RvLK~~G~L~IAEV~SRf--~~~~~F~~~~~~~-GF~~~~ 182 (219)
T PF05148_consen 131 SL--MGT--------------N-------WPDFIREANRVLKPGGILKIAEVKSRF--ENVKQFIKALKKL-GFKLKS 182 (219)
T ss_dssp -----SS----------------------HHHHHHHHHHHEEEEEEEEEEEEGGG---S-HHHHHHHHHCT-TEEEEE
T ss_pred hh--hCC--------------C-------cHHHHHHHHheeccCcEEEEEEecccC--cCHHHHHHHHHHC-CCeEEe
Confidence 22 222 1 24569999999999999886643 322 2333444444433 566543
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.013 Score=59.21 Aligned_cols=48 Identities=13% Similarity=0.127 Sum_probs=39.6
Q ss_pred CCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHc
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLH 383 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~ 383 (528)
..+|||+|||||.-+..+.+..+.-.+++++|.|+.+++.++..++..
T Consensus 34 P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~ 81 (274)
T PF09243_consen 34 PRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAG 81 (274)
T ss_pred CceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcc
Confidence 348999999999877777666665568999999999999998877654
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >COG1568 Predicted methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.016 Score=57.32 Aligned_cols=98 Identities=16% Similarity=0.162 Sum_probs=72.6
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc-CCCCCCEEEEc
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCDKVLLD 413 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~-~~~~fD~Vl~D 413 (528)
.|..|+=+| ---..++.+ .+.+-..+|..+||++..+...++-++..|++| ++.+..|+++..+. ..++||.++.|
T Consensus 152 ~gK~I~vvG-DDDLtsia~-aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~-ie~~~~Dlr~plpe~~~~kFDvfiTD 228 (354)
T COG1568 152 EGKEIFVVG-DDDLTSIAL-ALTGMPKRIAVVDIDERLIKFIEKVAEELGYNN-IEAFVFDLRNPLPEDLKRKFDVFITD 228 (354)
T ss_pred CCCeEEEEc-CchhhHHHH-HhcCCCceEEEEechHHHHHHHHHHHHHhCccc-hhheeehhcccChHHHHhhCCeeecC
Confidence 366788887 222333333 333435689999999999999999999999987 88999999886543 36799999999
Q ss_pred CCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCC
Q 009708 414 APCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPG 458 (528)
Q Consensus 414 ~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpG 458 (528)
||.+-.|+ +.+|......||.-
T Consensus 229 PpeTi~al-----------------------k~FlgRGI~tLkg~ 250 (354)
T COG1568 229 PPETIKAL-----------------------KLFLGRGIATLKGE 250 (354)
T ss_pred chhhHHHH-----------------------HHHHhccHHHhcCC
Confidence 99853222 44677777778865
|
|
| >TIGR00675 dcm DNA-methyltransferase (dcm) | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.0054 Score=63.17 Aligned_cols=78 Identities=22% Similarity=0.333 Sum_probs=58.1
Q ss_pred EEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcCCCCC
Q 009708 339 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSG 418 (528)
Q Consensus 339 VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg 418 (528)
|+|++||.||.+.-+-+. +--.+.++|+++.+++..+.|.. + .++++|+.++.......+|+++.-|||.+
T Consensus 1 vidLF~G~GG~~~Gl~~a--G~~~~~a~e~~~~a~~ty~~N~~-----~--~~~~~Di~~~~~~~~~~~dvl~gg~PCq~ 71 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA--GFKCVFASEIDKYAQKTYEANFG-----N--KVPFGDITKISPSDIPDFDILLGGFPCQP 71 (315)
T ss_pred CEEEecCccHHHHHHHHc--CCeEEEEEeCCHHHHHHHHHhCC-----C--CCCccChhhhhhhhCCCcCEEEecCCCcc
Confidence 689999999999887653 22346789999999999888753 2 23567887765432346899999999988
Q ss_pred CccccCC
Q 009708 419 LGVLSKR 425 (528)
Q Consensus 419 ~G~~~~~ 425 (528)
....++.
T Consensus 72 fS~ag~~ 78 (315)
T TIGR00675 72 FSIAGKR 78 (315)
T ss_pred cchhccc
Confidence 7765543
|
All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG2078 consensus tRNA modification enzyme [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.0017 Score=67.51 Aligned_cols=66 Identities=29% Similarity=0.397 Sum_probs=59.2
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCcc-EEEEcCccccccc
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSV-IRTIHADLRTFAD 401 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~-i~~~~~D~~~~~~ 401 (528)
.++|+.|-|+|||-|-+++-++.. ..+|+|+|.+++++++++.|++.+.++.. |++++.|+..+..
T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~kK---~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Flr 313 (495)
T KOG2078|consen 247 FKPGEVVCDVFAGVGPFALPAAKK---GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFLR 313 (495)
T ss_pred cCCcchhhhhhcCcCccccchhhc---CcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHhh
Confidence 467999999999999999988874 58999999999999999999999998765 9999999988764
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.0094 Score=63.69 Aligned_cols=101 Identities=17% Similarity=0.171 Sum_probs=59.7
Q ss_pred eEEEeCCccchHHHHHHHHcCCCcEEEEE---cCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcC
Q 009708 338 SIVDCCAAPGGKTLYMASCLSGQGLVYAI---DINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDA 414 (528)
Q Consensus 338 ~VLDl~aG~G~kt~~la~~~~~~~~v~av---D~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~ 414 (528)
.+||+|||.|.++.+|..+ +-.++.+ |..+..++.+-+ -|++..+.++ .+.-.+.+...||.|-|
T Consensus 120 ~~LDvGcG~aSF~a~l~~r---~V~t~s~a~~d~~~~qvqfale----RGvpa~~~~~---~s~rLPfp~~~fDmvHc-- 187 (506)
T PF03141_consen 120 TALDVGCGVASFGAYLLER---NVTTMSFAPNDEHEAQVQFALE----RGVPAMIGVL---GSQRLPFPSNAFDMVHC-- 187 (506)
T ss_pred EEEeccceeehhHHHHhhC---CceEEEcccccCCchhhhhhhh----cCcchhhhhh---ccccccCCccchhhhhc--
Confidence 6899999999999999875 2333222 344444443322 3665422211 11222334578999874
Q ss_pred CCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCC
Q 009708 415 PCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSID 469 (528)
Q Consensus 415 Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~ 469 (528)
+...+ .|.... --+|-+.-++|+|||++|+|.-.+.
T Consensus 188 --src~i-------~W~~~~----------g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 188 --SRCLI-------PWHPND----------GFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred --ccccc-------cchhcc----------cceeehhhhhhccCceEEecCCccc
Confidence 33222 232111 1147778899999999999877666
|
; GO: 0008168 methyltransferase activity |
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.09 Score=49.58 Aligned_cols=41 Identities=22% Similarity=0.326 Sum_probs=35.7
Q ss_pred hcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCCh
Q 009708 330 VVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINK 370 (528)
Q Consensus 330 ~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~ 370 (528)
+..+++|.+|+|+--|.|.+|..++..+++.|.|+++=-.+
T Consensus 43 FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e 83 (238)
T COG4798 43 FAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAE 83 (238)
T ss_pred EeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchh
Confidence 44678999999999999999999999999999999875443
|
|
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.01 Score=61.84 Aligned_cols=60 Identities=12% Similarity=0.099 Sum_probs=52.2
Q ss_pred eEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccc
Q 009708 338 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 399 (528)
Q Consensus 338 ~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~ 399 (528)
.|||+|+|+|..+..++..+ .-.|+|+|.-..+.+.+++...++|.+++|++++--.++.
T Consensus 69 ~vLdigtGTGLLSmMAvrag--aD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev 128 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAG--ADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEV 128 (636)
T ss_pred EEEEccCCccHHHHHHHHhc--CCeEEeehhhchHHHHHHHHHhcCCCccceeeecccccee
Confidence 58999999999998887763 4579999999999999999999999998899887655544
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.017 Score=60.30 Aligned_cols=106 Identities=23% Similarity=0.316 Sum_probs=82.0
Q ss_pred cCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEE
Q 009708 331 VDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKV 410 (528)
Q Consensus 331 l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~V 410 (528)
....++..++|++||-|+....++.. ....++++|.++..+..........++++...++.+|+.+.+.. ...||.+
T Consensus 106 ~~~~~~~~~~~~~~g~~~~~~~i~~f--~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fe-dn~fd~v 182 (364)
T KOG1269|consen 106 ESCFPGSKVLDVGTGVGGPSRYIAVF--KKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFE-DNTFDGV 182 (364)
T ss_pred hcCcccccccccCcCcCchhHHHHHh--ccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCC-ccccCcE
Confidence 34567889999999999999999876 34689999999999999999888888887667788888776543 4679987
Q ss_pred E-EcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEE
Q 009708 411 L-LDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV 462 (528)
Q Consensus 411 l-~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lv 462 (528)
- +|.-|.. | + -...+.+.++.+||||..+
T Consensus 183 ~~ld~~~~~-------~------~----------~~~~y~Ei~rv~kpGG~~i 212 (364)
T KOG1269|consen 183 RFLEVVCHA-------P------D----------LEKVYAEIYRVLKPGGLFI 212 (364)
T ss_pred EEEeecccC-------C------c----------HHHHHHHHhcccCCCceEE
Confidence 4 6666622 1 0 1234788889999999877
|
|
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.035 Score=48.68 Aligned_cols=72 Identities=14% Similarity=0.168 Sum_probs=54.1
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEc
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLD 413 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D 413 (528)
.+.+|+|+|++-|..+++.+.. +..+|+++|.++...+..++|++.+.+-+... ... .++. .-+.||...+|
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~--GAK~Vva~E~~~kl~k~~een~k~nnI~DK~v-~~~---eW~~-~Y~~~Di~~iD 99 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLR--GASFVVQYEKEEKLRKKWEEVCAYFNICDKAV-MKG---EWNG-EYEDVDIFVMD 99 (156)
T ss_pred cCCEEEEecCCccchhhHHhhc--CccEEEEeccCHHHHHHHHHHhhhheeeecee-ecc---cccc-cCCCcceEEEE
Confidence 3779999999999999999864 67899999999999999999998875432211 111 1222 23679988887
|
|
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.051 Score=55.76 Aligned_cols=101 Identities=14% Similarity=0.106 Sum_probs=73.8
Q ss_pred CeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcCCC
Q 009708 337 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPC 416 (528)
Q Consensus 337 ~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~Pc 416 (528)
...+|+|+|.|..+-.+....+ +|-+++.+...+-.+..+.. .| |+.+-+|.++-.+ +-|+|++- -|
T Consensus 179 ~~avDvGgGiG~v~k~ll~~fp---~ik~infdlp~v~~~a~~~~-~g----V~~v~gdmfq~~P----~~daI~mk-Wi 245 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKYP---HIKGINFDLPFVLAAAPYLA-PG----VEHVAGDMFQDTP----KGDAIWMK-WI 245 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhCC---CCceeecCHHHHHhhhhhhc-CC----cceecccccccCC----CcCeEEEE-ee
Confidence 6899999999999999988533 48888888888877766654 44 5567788876533 35788751 11
Q ss_pred CCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCC
Q 009708 417 SGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSID 469 (528)
Q Consensus 417 sg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~ 469 (528)
...++.++... ||+++++.|+|||.|+...+-..
T Consensus 246 ------------LhdwtDedcvk-------iLknC~~sL~~~GkIiv~E~V~p 279 (342)
T KOG3178|consen 246 ------------LHDWTDEDCVK-------ILKNCKKSLPPGGKIIVVENVTP 279 (342)
T ss_pred ------------cccCChHHHHH-------HHHHHHHhCCCCCEEEEEeccCC
Confidence 11356666655 49999999999999998877443
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.026 Score=64.06 Aligned_cols=129 Identities=16% Similarity=0.167 Sum_probs=80.9
Q ss_pred CeEEEeCCccchHHHHHHHHcC------C-----CcEEEEEcCChHHHHHHHHH--------------HHH-----cCC-
Q 009708 337 QSIVDCCAAPGGKTLYMASCLS------G-----QGLVYAIDINKGRLRILNET--------------AKL-----HQV- 385 (528)
Q Consensus 337 ~~VLDl~aG~G~kt~~la~~~~------~-----~~~v~avD~s~~~l~~~~~n--------------~~~-----~g~- 385 (528)
-+|+|+|-|+|...+...+... + .-+++++|..|-..+.+.+. .+. .|+
T Consensus 59 ~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~ 138 (662)
T PRK01747 59 FVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGCH 138 (662)
T ss_pred EEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCce
Confidence 5899999999998877765541 1 24789999876333222222 111 122
Q ss_pred -----Cc--cEEEEcCccccccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCC
Q 009708 386 -----NS--VIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPG 458 (528)
Q Consensus 386 -----~~--~i~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpG 458 (528)
.+ .++++.+|+.+........||+|++|+=. -.++|++ |. .+++....++++||
T Consensus 139 ~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~Fs-----P~~np~~-W~-------------~~~~~~l~~~~~~~ 199 (662)
T PRK01747 139 RLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFA-----PAKNPDM-WS-------------PNLFNALARLARPG 199 (662)
T ss_pred EEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCC-----CccChhh-cc-------------HHHHHHHHHHhCCC
Confidence 11 35577789887665444569999999522 2256765 43 45688889999999
Q ss_pred CEEEEEcCCCCchhhHHHHHHHHhhCCCceEecC
Q 009708 459 GVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPA 492 (528)
Q Consensus 459 G~LvysTcs~~~~Ene~~v~~~l~~~~~~~~~~~ 492 (528)
|+++-.|++ ..|..-|... +|++...
T Consensus 200 ~~~~t~t~a-------~~vr~~l~~~-GF~v~~~ 225 (662)
T PRK01747 200 ATLATFTSA-------GFVRRGLQEA-GFTVRKV 225 (662)
T ss_pred CEEEEeehH-------HHHHHHHHHc-CCeeeec
Confidence 999955443 2444444443 4555443
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.015 Score=57.79 Aligned_cols=156 Identities=21% Similarity=0.167 Sum_probs=83.0
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCC----------------------------
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN---------------------------- 386 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~---------------------------- 386 (528)
.|.++||+||||-..-+.-|. .--..|+..|..+.-.+.+++-++.-+.-
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~--~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSAC--EWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGG--GTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHhhhhHH--HhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 477999999999443222221 22347999999999888776655432210
Q ss_pred ccEEEEcCccccccccC-----CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEE
Q 009708 387 SVIRTIHADLRTFADNS-----TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVL 461 (528)
Q Consensus 387 ~~i~~~~~D~~~~~~~~-----~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~L 461 (528)
..-.++.+|+++.++.. +.+||.|++- =| .+..-.-...+...+++..++|||||.|
T Consensus 134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~-fc-----------------LE~a~~d~~~y~~al~ni~~lLkpGG~L 195 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISS-FC-----------------LESACKDLDEYRRALRNISSLLKPGGHL 195 (256)
T ss_dssp HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEE-SS-----------------HHHH-SSHHHHHHHHHHHHTTEEEEEEE
T ss_pred hhceEEEeeccCCCCCCccccCccchhhhhhh-HH-----------------HHHHcCCHHHHHHHHHHHHHHcCCCcEE
Confidence 01235677776654332 2358887741 11 1111111234566799999999999999
Q ss_pred EEEcCC---C---------CchhhHHHHHHHHhhCCCceEecCCCCCCCccccCCceEEEcCCCCCCCceEEEEEEe
Q 009708 462 VYSTCS---I---------DPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLVR 526 (528)
Q Consensus 462 vysTcs---~---------~~~Ene~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~~~dGff~a~l~k 526 (528)
+....- . .-.-|++.|...|++. +|.+..... .-...+.+|.|++.=+|
T Consensus 196 il~~~l~~t~Y~vG~~~F~~l~l~ee~v~~al~~a-G~~i~~~~~---------------~~~~~d~~~~~f~~a~K 256 (256)
T PF01234_consen 196 ILAGVLGSTYYMVGGHKFPCLPLNEEFVREALEEA-GFDIEDLEK---------------QSKVSDYEGMFFLVARK 256 (256)
T ss_dssp EEEEESS-SEEEETTEEEE---B-HHHHHHHHHHT-TEEEEEEEG----------------TTTB---EEEEEEEEE
T ss_pred EEEEEcCceeEEECCEecccccCCHHHHHHHHHHc-CCEEEeccc---------------ccCcCCCCcEEEEEEeC
Confidence 965331 0 0123556777777764 566654420 01123557777776554
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.016 Score=60.02 Aligned_cols=81 Identities=20% Similarity=0.353 Sum_probs=60.7
Q ss_pred CeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC-CC-CCCEEEEcC
Q 009708 337 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS-TV-KCDKVLLDA 414 (528)
Q Consensus 337 ~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~-~~-~fD~Vl~D~ 414 (528)
-+++|+|||.||..+-+... +---+.++|+++.+++..+.|... ..++..|...+.... .. .+|+|+.-|
T Consensus 4 ~~~idLFsG~GG~~lGf~~a--gf~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~~~~~~~~DvligGp 75 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEA--GFEIVFANEIDPPAVATYKANFPH------GDIILGDIKELDGEALRKSDVDVLIGGP 75 (328)
T ss_pred ceEEeeccCCchHHHHHHhc--CCeEEEEEecCHHHHHHHHHhCCC------CceeechHhhcChhhccccCCCEEEeCC
Confidence 47999999999999777653 223578999999999998888653 235667776654332 12 799999999
Q ss_pred CCCCCccccCC
Q 009708 415 PCSGLGVLSKR 425 (528)
Q Consensus 415 Pcsg~G~~~~~ 425 (528)
||-+..+.+++
T Consensus 76 PCQ~FS~aG~r 86 (328)
T COG0270 76 PCQDFSIAGKR 86 (328)
T ss_pred CCcchhhcCcc
Confidence 99887776655
|
|
| >PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.19 Score=46.58 Aligned_cols=126 Identities=19% Similarity=0.207 Sum_probs=76.3
Q ss_pred eEeecchHHHHHHhcC--CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcC
Q 009708 317 CAVQDESAGLVVAVVD--PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA 394 (528)
Q Consensus 317 ~~~Qd~~s~l~~~~l~--~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~ 394 (528)
|+.-|.++..++..+. ..++.+|+=+||=+-...+.- ......+++-.|++.+- +..|-+ .++.-
T Consensus 5 fwYs~~T~~~l~~~l~~~~~~~~~iaclstPsl~~~l~~--~~~~~~~~~Lle~D~RF--------~~~~~~---~F~fy 71 (162)
T PF10237_consen 5 FWYSDETAEFLARELLDGALDDTRIACLSTPSLYEALKK--ESKPRIQSFLLEYDRRF--------EQFGGD---EFVFY 71 (162)
T ss_pred cccCHHHHHHHHHHHHHhcCCCCEEEEEeCcHHHHHHHh--hcCCCccEEEEeecchH--------HhcCCc---ceEEC
Confidence 3444566655555433 245678999998776555443 22345688999998544 233322 35556
Q ss_pred cccccc---ccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCch
Q 009708 395 DLRTFA---DNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPE 471 (528)
Q Consensus 395 D~~~~~---~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~ 471 (528)
|..... ....++||+|++|||.-. ++ .+.+....+..++|+++.++.+| +.
T Consensus 72 D~~~p~~~~~~l~~~~d~vv~DPPFl~----------------~e------c~~k~a~ti~~L~k~~~kii~~T----g~ 125 (162)
T PF10237_consen 72 DYNEPEELPEELKGKFDVVVIDPPFLS----------------EE------CLTKTAETIRLLLKPGGKIILCT----GE 125 (162)
T ss_pred CCCChhhhhhhcCCCceEEEECCCCCC----------------HH------HHHHHHHHHHHHhCccceEEEec----HH
Confidence 665422 222478999999999921 11 12223444555567788888755 56
Q ss_pred hhHHHHHHHH
Q 009708 472 ENEERVEAFL 481 (528)
Q Consensus 472 Ene~~v~~~l 481 (528)
++++.+.+.+
T Consensus 126 ~~~~~~~~ll 135 (162)
T PF10237_consen 126 EMEELIKKLL 135 (162)
T ss_pred HHHHHHHHHh
Confidence 7777777777
|
This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ). |
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.028 Score=55.13 Aligned_cols=94 Identities=21% Similarity=0.387 Sum_probs=62.3
Q ss_pred HHHhcCCCCC-CeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCC
Q 009708 327 VVAVVDPQPG-QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 405 (528)
Q Consensus 327 ~~~~l~~~~g-~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~ 405 (528)
++..+...|+ ..|-|+|||-+-++. . ..-.|+++|+.+ +. -.++.+|+.+.+- ..+
T Consensus 171 ii~~ik~r~~~~vIaD~GCGEakiA~----~--~~~kV~SfDL~a--------------~~--~~V~~cDm~~vPl-~d~ 227 (325)
T KOG3045|consen 171 IIRKIKRRPKNIVIADFGCGEAKIAS----S--ERHKVHSFDLVA--------------VN--ERVIACDMRNVPL-EDE 227 (325)
T ss_pred HHHHHHhCcCceEEEecccchhhhhh----c--cccceeeeeeec--------------CC--CceeeccccCCcC-ccC
Confidence 3344444444 478999999987654 1 235799999742 22 2456789888654 357
Q ss_pred CCCEEEEcCCCC-CCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 406 KCDKVLLDAPCS-GLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 406 ~fD~Vl~D~Pcs-g~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
+.|++++ |- -.|+ ++ ..++.+|.++||+||.|.++..+
T Consensus 228 svDvaV~---CLSLMgt--------------n~-------~df~kEa~RiLk~gG~l~IAEv~ 266 (325)
T KOG3045|consen 228 SVDVAVF---CLSLMGT--------------NL-------ADFIKEANRILKPGGLLYIAEVK 266 (325)
T ss_pred cccEEEe---eHhhhcc--------------cH-------HHHHHHHHHHhccCceEEEEehh
Confidence 8999886 52 1222 22 35699999999999999876543
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.023 Score=57.63 Aligned_cols=46 Identities=15% Similarity=0.170 Sum_probs=38.7
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHH
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKL 382 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~ 382 (528)
.+|+.|||.+||+|..++++.++ +-+.+|+|++++.++.+++++..
T Consensus 207 ~~GD~VLDPF~GSGTT~~AA~~l---gR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 207 NPGDIVLDPFAGSFTTGAVAKAS---GRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred CCCCEEEECCCCCcHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHh
Confidence 68999999999999876655543 45799999999999999998754
|
|
| >PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.31 Score=46.89 Aligned_cols=92 Identities=16% Similarity=0.145 Sum_probs=64.5
Q ss_pred ecchHHHHHHhcCCCCCCeEEEeCCccch--HH--HHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCc
Q 009708 320 QDESAGLVVAVVDPQPGQSIVDCCAAPGG--KT--LYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHAD 395 (528)
Q Consensus 320 Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~--kt--~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D 395 (528)
+...+.++..+..-..-..+++.+|+-|. .| +.+|.+ +.+|++++|-.++..+...++.+...|+.+.++|+.+|
T Consensus 26 ep~~aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr-~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~ 104 (218)
T PF07279_consen 26 EPGVAEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAAR-QTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGE 104 (218)
T ss_pred CCCHHHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHH-hcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecC
Confidence 44455566555554455679999776443 33 334443 45689999999999998899999988988777998888
Q ss_pred cc-cccccCCCCCCEEEEc
Q 009708 396 LR-TFADNSTVKCDKVLLD 413 (528)
Q Consensus 396 ~~-~~~~~~~~~fD~Vl~D 413 (528)
.. .+.... ...|.+++|
T Consensus 105 ~~e~~~~~~-~~iDF~vVD 122 (218)
T PF07279_consen 105 APEEVMPGL-KGIDFVVVD 122 (218)
T ss_pred CHHHHHhhc-cCCCEEEEe
Confidence 53 344333 569999998
|
The function of this family is unknown. |
| >PRK10458 DNA cytosine methylase; Provisional | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.072 Score=57.64 Aligned_cols=83 Identities=18% Similarity=0.257 Sum_probs=57.6
Q ss_pred CCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc-------------
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN------------- 402 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~------------- 402 (528)
.-+++|++||.||.++-+-.. +.-.|.++|+++.+.+.-+.|.... ++ ..++++|+..+...
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~a--G~~~v~a~Eid~~A~~TY~~N~~~~--p~-~~~~~~DI~~i~~~~~~~~~~~~~~~~ 162 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAI--GGQCVFTSEWNKHAVRTYKANWYCD--PA-THRFNEDIRDITLSHKEGVSDEEAAEH 162 (467)
T ss_pred CceEEEeCcCccHHHHHHHHc--CCEEEEEEechHHHHHHHHHHcCCC--Cc-cceeccChhhCccccccccchhhhhhh
Confidence 348999999999999887553 2336789999999999888875211 11 23455666655311
Q ss_pred ---CCCCCCEEEEcCCCCCCcccc
Q 009708 403 ---STVKCDKVLLDAPCSGLGVLS 423 (528)
Q Consensus 403 ---~~~~fD~Vl~D~Pcsg~G~~~ 423 (528)
....+|+++.-|||.+....+
T Consensus 163 ~~~~~p~~DvL~gGpPCQ~FS~AG 186 (467)
T PRK10458 163 IRQHIPDHDVLLAGFPCQPFSLAG 186 (467)
T ss_pred hhccCCCCCEEEEcCCCCccchhc
Confidence 112589999999998776554
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.042 Score=55.72 Aligned_cols=72 Identities=19% Similarity=0.164 Sum_probs=46.3
Q ss_pred EEEEcCccccccccC-CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 389 IRTIHADLRTFADNS-TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 389 i~~~~~D~~~~~~~~-~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
..++++|+.++.... .++||+|++|||+.. |.-.....-.|. ..+.......++..+.++|||||.+++. |.
T Consensus 9 ~~i~~gD~~~~l~~l~~~siDlIitDPPY~~-~~~~~~~~~~~~-----~~~~~~~l~~~l~~~~rvLK~~G~i~i~-~~ 81 (284)
T PRK11524 9 KTIIHGDALTELKKIPSESVDLIFADPPYNI-GKNFDGLIEAWK-----EDLFIDWLYEWIDECHRVLKKQGTMYIM-NS 81 (284)
T ss_pred CEEEeccHHHHHHhcccCcccEEEECCCccc-cccccccccccc-----HHHHHHHHHHHHHHHHHHhCCCcEEEEE-cC
Confidence 468899999865332 568999999999942 110001111121 2233344567899999999999998864 44
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.1 Score=53.88 Aligned_cols=96 Identities=19% Similarity=0.242 Sum_probs=64.9
Q ss_pred cCCCCCCeEEEeCCc-cchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCE
Q 009708 331 VDPQPGQSIVDCCAA-PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDK 409 (528)
Q Consensus 331 l~~~~g~~VLDl~aG-~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~ 409 (528)
.+..||++|+=.|+| -|..++++|..+. .+|+++|++++.++.++ ++|.+..+.....|.... ..+.||.
T Consensus 162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~g--a~Via~~~~~~K~e~a~----~lGAd~~i~~~~~~~~~~---~~~~~d~ 232 (339)
T COG1064 162 ANVKPGKWVAVVGAGGLGHMAVQYAKAMG--AEVIAITRSEEKLELAK----KLGADHVINSSDSDALEA---VKEIADA 232 (339)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEeCChHHHHHHH----HhCCcEEEEcCCchhhHH---hHhhCcE
Confidence 356789998888877 4457788888764 79999999999998765 456653222111222221 1234999
Q ss_pred EEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 410 VLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 410 Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
|+.-.| . .-+..+++.|++||++|..
T Consensus 233 ii~tv~-~----------------------------~~~~~~l~~l~~~G~~v~v 258 (339)
T COG1064 233 IIDTVG-P----------------------------ATLEPSLKALRRGGTLVLV 258 (339)
T ss_pred EEECCC-h----------------------------hhHHHHHHHHhcCCEEEEE
Confidence 997544 1 1277788999999999854
|
|
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.031 Score=53.74 Aligned_cols=43 Identities=19% Similarity=0.285 Sum_probs=32.1
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHH
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNE 378 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~ 378 (528)
..+|+.|||.+||+|..+.++.++ +-+.+|+|+++..++.+++
T Consensus 189 t~~gdiVlDpF~GSGTT~~aa~~l---~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 189 TNPGDIVLDPFAGSGTTAVAAEEL---GRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp S-TT-EEEETT-TTTHHHHHHHHT---T-EEEEEESSHHHHHHHHH
T ss_pred hccceeeehhhhccChHHHHHHHc---CCeEEEEeCCHHHHHHhcC
Confidence 357999999999999876665543 4579999999999998864
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.04 Score=53.22 Aligned_cols=83 Identities=12% Similarity=0.086 Sum_probs=58.3
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHc-CCCccEEEEcC-cccccccc---CCCCCCE
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLH-QVNSVIRTIHA-DLRTFADN---STVKCDK 409 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~-g~~~~i~~~~~-D~~~~~~~---~~~~fD~ 409 (528)
++-++||+|.|.--+=-.+..++- +.+.+|-|+++..++.|+.++..+ ++.+.|++... |-..+.+. ..+.||.
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eY-gwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~ 156 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEY-GWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDA 156 (292)
T ss_pred CceEEEeeccCcccccccccceee-cceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeee
Confidence 345789999886554444444332 468999999999999999999988 77776766543 22222111 1468999
Q ss_pred EEEcCCCCC
Q 009708 410 VLLDAPCSG 418 (528)
Q Consensus 410 Vl~D~Pcsg 418 (528)
++||||..+
T Consensus 157 tlCNPPFh~ 165 (292)
T COG3129 157 TLCNPPFHD 165 (292)
T ss_pred EecCCCcch
Confidence 999999854
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.056 Score=52.93 Aligned_cols=49 Identities=14% Similarity=0.125 Sum_probs=40.3
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcC
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQ 384 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g 384 (528)
..+|+.|||.+||+|.....+.+. +-+.+|+|+++...+.+.++++...
T Consensus 161 s~~g~~vlDpf~Gsgtt~~aa~~~---~r~~~g~e~~~~y~~~~~~r~~~~~ 209 (227)
T PRK13699 161 THPNAIVLDPFAGSGSTCVAALQS---GRRYIGIELLEQYHRAGQQRLAAVQ 209 (227)
T ss_pred CCCCCEEEeCCCCCCHHHHHHHHc---CCCEEEEecCHHHHHHHHHHHHHHH
Confidence 458999999999999877665543 4578999999999999999887643
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.28 Score=50.74 Aligned_cols=101 Identities=15% Similarity=0.216 Sum_probs=60.0
Q ss_pred CCCCCCeEEEeCCcc-chHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEE
Q 009708 332 DPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKV 410 (528)
Q Consensus 332 ~~~~g~~VLDl~aG~-G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~V 410 (528)
...+|++||=.|||+ |..++++|+.+ +..+|+++|.++++++.++ .+|.+..+..-..|....... .+.||+|
T Consensus 166 ~~~~g~~VlV~G~G~vG~~aiqlak~~-G~~~Vi~~~~~~~~~~~a~----~lGa~~vi~~~~~~~~~~~~~-~g~~D~v 239 (343)
T PRK09880 166 GDLQGKRVFVSGVGPIGCLIVAAVKTL-GAAEIVCADVSPRSLSLAR----EMGADKLVNPQNDDLDHYKAE-KGYFDVS 239 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEEeCCHHHHHHHH----HcCCcEEecCCcccHHHHhcc-CCCCCEE
Confidence 445788998887643 33445556554 2347999999999987765 457653221111122222211 2358988
Q ss_pred EEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcC
Q 009708 411 LLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466 (528)
Q Consensus 411 l~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTc 466 (528)
|- |+|.. ..+..+.++|++||+++....
T Consensus 240 id---~~G~~-------------------------~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 240 FE---VSGHP-------------------------SSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred EE---CCCCH-------------------------HHHHHHHHHhhcCCEEEEEcc
Confidence 73 44311 126677888999999986544
|
|
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.057 Score=57.89 Aligned_cols=103 Identities=21% Similarity=0.314 Sum_probs=75.2
Q ss_pred eEEEeCCccchHH---HHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcC
Q 009708 338 SIVDCCAAPGGKT---LYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDA 414 (528)
Q Consensus 338 ~VLDl~aG~G~kt---~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~ 414 (528)
.|+=+|+|-|-.. +.+|.......+++|||.+|.++-.++. .+....+++|+++..|++.+... .++.|+++...
T Consensus 370 VimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~~Vtii~~DMR~w~ap-~eq~DI~VSEL 447 (649)
T KOG0822|consen 370 VIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDNRVTIISSDMRKWNAP-REQADIIVSEL 447 (649)
T ss_pred EEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhcCeeEEEeccccccCCc-hhhccchHHHh
Confidence 5788999998754 5566655556789999999999988876 56667788899999999998742 36789877432
Q ss_pred CCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEE
Q 009708 415 PCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV 462 (528)
Q Consensus 415 Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lv 462 (528)
.|.++-+. .+ -+.|+-+.++|||.|+.+
T Consensus 448 ----LGSFGDNE-----LS-----------PECLDG~q~fLkpdgIsI 475 (649)
T KOG0822|consen 448 ----LGSFGDNE-----LS-----------PECLDGAQKFLKPDGISI 475 (649)
T ss_pred ----hccccCcc-----CC-----------HHHHHHHHhhcCCCceEc
Confidence 22222221 11 134888999999999887
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.41 Score=47.97 Aligned_cols=41 Identities=12% Similarity=-0.117 Sum_probs=34.5
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHH
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNE 378 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~ 378 (528)
...+||=.|||-|..+..+|.+ +-.+.|+|.|-.|+-...-
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~---G~~~~gnE~S~~Mll~s~f 96 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKL---GYAVQGNEFSYFMLLASNF 96 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhc---cceEEEEEchHHHHHHHHH
Confidence 3568999999999999999986 5689999999998755444
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.031 Score=53.37 Aligned_cols=92 Identities=20% Similarity=0.294 Sum_probs=66.9
Q ss_pred HHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccc-----
Q 009708 327 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD----- 401 (528)
Q Consensus 327 ~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~----- 401 (528)
+.+.+.|.+|...+||.-|.||.|..+.+. .+..++++.|.+|-+.+.++......-.. .+..+.+.+..+..
T Consensus 35 vl~~lspv~g~sf~DmTfGagGHt~~ilqk-~se~k~yalDrDP~A~~La~~~s~el~~~-~l~a~Lg~Fs~~~~l~~~~ 112 (303)
T KOG2782|consen 35 VLDILSPVRGRSFVDMTFGAGGHTSSILQK-HSELKNYALDRDPVARKLAHFHSDELMHP-TLKAVLGNFSYIKSLIADT 112 (303)
T ss_pred HHHHcCCCCCceEEEEeccCCcchHHHHHh-CcHhhhhhhccChHHHHHHHHhhHhhcch-hHHHHHhhhHHHHHHHHHh
Confidence 456788999999999999999999999887 45678999999999998887766432211 22233333333221
Q ss_pred -cCCCCCCEEEEcCCCCCCc
Q 009708 402 -NSTVKCDKVLLDAPCSGLG 420 (528)
Q Consensus 402 -~~~~~fD~Vl~D~Pcsg~G 420 (528)
-.+..||-|+.|--||+.-
T Consensus 113 gl~~~~vDGiLmDlGcSSMQ 132 (303)
T KOG2782|consen 113 GLLDVGVDGILMDLGCSSMQ 132 (303)
T ss_pred CCCcCCcceEEeecCccccc
Confidence 1146899999999998753
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.061 Score=51.88 Aligned_cols=107 Identities=13% Similarity=0.207 Sum_probs=70.7
Q ss_pred CCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAP 415 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~P 415 (528)
...++|+||+-|....++... +-++++-+|.|-.+++.++.- +..++. +....+|-..++ ....+||+||.
T Consensus 73 fp~a~diGcs~G~v~rhl~~e--~vekli~~DtS~~M~~s~~~~-qdp~i~--~~~~v~DEE~Ld-f~ens~DLiis--- 143 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGE--GVEKLIMMDTSYDMIKSCRDA-QDPSIE--TSYFVGDEEFLD-FKENSVDLIIS--- 143 (325)
T ss_pred CcceeecccchhhhhHHHHhc--chhheeeeecchHHHHHhhcc-CCCceE--EEEEecchhccc-ccccchhhhhh---
Confidence 347999999999999988764 467899999999999877642 122332 344556655544 33578999984
Q ss_pred CCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhh
Q 009708 416 CSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEEN 473 (528)
Q Consensus 416 csg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~En 473 (528)
+.+. +|. ..+. .-+.++...|||.|.++ .|+..++.
T Consensus 144 --Slsl-------HW~------NdLP----g~m~~ck~~lKPDg~Fi---asmlggdT 179 (325)
T KOG2940|consen 144 --SLSL-------HWT------NDLP----GSMIQCKLALKPDGLFI---ASMLGGDT 179 (325)
T ss_pred --hhhh-------hhh------ccCc----hHHHHHHHhcCCCccch---hHHhcccc
Confidence 3332 332 1111 12667888899999888 45555443
|
|
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.054 Score=47.43 Aligned_cols=90 Identities=23% Similarity=0.280 Sum_probs=59.0
Q ss_pred ccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc-C-CCCCCEEEEcCCCCCCccc
Q 009708 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-S-TVKCDKVLLDAPCSGLGVL 422 (528)
Q Consensus 345 G~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~-~-~~~fD~Vl~D~Pcsg~G~~ 422 (528)
|-|..++++|+.++ .+|+++|.++.+++.++ ++|.+..+.....|..+.... . ...+|.||- |+|.+.
T Consensus 1 ~vG~~a~q~ak~~G--~~vi~~~~~~~k~~~~~----~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid---~~g~~~- 70 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG--AKVIATDRSEEKLELAK----ELGADHVIDYSDDDFVEQIRELTGGRGVDVVID---CVGSGD- 70 (130)
T ss_dssp HHHHHHHHHHHHTT--SEEEEEESSHHHHHHHH----HTTESEEEETTTSSHHHHHHHHTTTSSEEEEEE---SSSSHH-
T ss_pred ChHHHHHHHHHHcC--CEEEEEECCHHHHHHHH----hhcccccccccccccccccccccccccceEEEE---ecCcHH-
Confidence 45888999998864 89999999999987764 567553222112222221111 1 247998875 544222
Q ss_pred cCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCC
Q 009708 423 SKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 468 (528)
Q Consensus 423 ~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~ 468 (528)
.++.+..++++||+++.....-
T Consensus 71 ------------------------~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 71 ------------------------TLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp ------------------------HHHHHHHHEEEEEEEEEESSTS
T ss_pred ------------------------HHHHHHHHhccCCEEEEEEccC
Confidence 4888999999999999765543
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.012 Score=55.65 Aligned_cols=92 Identities=27% Similarity=0.377 Sum_probs=57.5
Q ss_pred CCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAP 415 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~P 415 (528)
..++||+|||-|-.|..++-.+ .+|+|.|.|..|...++. .+.. .+..+ +... .+-+||+|+|
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~f---eevyATElS~tMr~rL~k----k~yn-Vl~~~-----ew~~-t~~k~dli~c--- 175 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTF---EEVYATELSWTMRDRLKK----KNYN-VLTEI-----EWLQ-TDVKLDLILC--- 175 (288)
T ss_pred CeeEEeccCCCcchhhhhcchH---HHHHHHHhhHHHHHHHhh----cCCc-eeeeh-----hhhh-cCceeehHHH---
Confidence 3589999999999999998653 469999999888766553 3332 12211 1111 1246888874
Q ss_pred CCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcC-CCEEEE
Q 009708 416 CSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKP-GGVLVY 463 (528)
Q Consensus 416 csg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~Lkp-GG~Lvy 463 (528)
.-++.|. ....++|+.....|.| +|+++.
T Consensus 176 ---lNlLDRc----------------~~p~kLL~Di~~vl~psngrviv 205 (288)
T KOG3987|consen 176 ---LNLLDRC----------------FDPFKLLEDIHLVLAPSNGRVIV 205 (288)
T ss_pred ---HHHHHhh----------------cChHHHHHHHHHHhccCCCcEEE
Confidence 1111111 1123468888888988 787663
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.22 Score=52.09 Aligned_cols=102 Identities=25% Similarity=0.332 Sum_probs=65.0
Q ss_pred CCCCCeEEEeCCccch-HHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcC-cccccc-c-cCCCCCC
Q 009708 333 PQPGQSIVDCCAAPGG-KTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA-DLRTFA-D-NSTVKCD 408 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~-kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~-D~~~~~-~-~~~~~fD 408 (528)
..++.+|+=+||||=| .+.++++. .+..+|+++|.++.+++.+++.. +.+ .+..... +..... . .....||
T Consensus 166 ~~~~~~V~V~GaGpIGLla~~~a~~-~Ga~~Viv~d~~~~Rl~~A~~~~---g~~-~~~~~~~~~~~~~~~~~t~g~g~D 240 (350)
T COG1063 166 VRPGGTVVVVGAGPIGLLAIALAKL-LGASVVIVVDRSPERLELAKEAG---GAD-VVVNPSEDDAGAEILELTGGRGAD 240 (350)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHH-cCCceEEEeCCCHHHHHHHHHhC---CCe-EeecCccccHHHHHHHHhCCCCCC
Confidence 3455599999999944 55666665 45689999999999999887632 222 1111111 111111 1 1124699
Q ss_pred EEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 409 KVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 409 ~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
.|+- |+|.. ..+..+.+++++||++++.--.
T Consensus 241 ~vie---~~G~~-------------------------~~~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 241 VVIE---AVGSP-------------------------PALDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred EEEE---CCCCH-------------------------HHHHHHHHHhcCCCEEEEEecc
Confidence 9985 66511 1488899999999999976544
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.17 Score=49.89 Aligned_cols=72 Identities=19% Similarity=0.102 Sum_probs=51.7
Q ss_pred CCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEE
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 412 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~ 412 (528)
..+|+|+|||-=-+++-.... .++..++|+||+...++.+..-+..+|.+. ++...|...-.+ ....|+.|+
T Consensus 106 p~sVlDigCGlNPlalp~~~~-~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~--~~~v~Dl~~~~~--~~~~DlaLl 177 (251)
T PF07091_consen 106 PDSVLDIGCGLNPLALPWMPE-APGATYIAYDIDSQLVEFLNAFLAVLGVPH--DARVRDLLSDPP--KEPADLALL 177 (251)
T ss_dssp -SEEEEET-TTCHHHHHTTTS-STT-EEEEEESBHHHHHHHHHHHHHTT-CE--EEEEE-TTTSHT--TSEESEEEE
T ss_pred CchhhhhhccCCceehhhccc-CCCcEEEEEeCCHHHHHHHHHHHHhhCCCc--ceeEeeeeccCC--CCCcchhhH
Confidence 569999999998888755543 345699999999999999999999999874 455557655432 356788876
|
|
| >PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.5 Score=46.86 Aligned_cols=124 Identities=19% Similarity=0.318 Sum_probs=76.9
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC----CCcEEEEEcCCh--------------------------HHHHHHHHHHHHcC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS----GQGLVYAIDINK--------------------------GRLRILNETAKLHQ 384 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~----~~~~v~avD~s~--------------------------~~l~~~~~n~~~~g 384 (528)
|| .|+++||--|+.++.++..+. ..-+|+++|--. -.++..++|+++.|
T Consensus 75 pG-divE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~g 153 (248)
T PF05711_consen 75 PG-DIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYG 153 (248)
T ss_dssp -S-EEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTT
T ss_pred Ce-EEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcC
Confidence 44 799999999998877765542 234688887511 14566777777777
Q ss_pred C-CccEEEEcCccccccccC-CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEE
Q 009708 385 V-NSVIRTIHADLRTFADNS-TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV 462 (528)
Q Consensus 385 ~-~~~i~~~~~D~~~~~~~~-~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lv 462 (528)
+ ++++.++.+.+.+..+.. .+++-++-+|.-. .+--...|+..+..|.|||+|+
T Consensus 154 l~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~Dl------------------------YesT~~aLe~lyprl~~GGiIi 209 (248)
T PF05711_consen 154 LLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDL------------------------YESTKDALEFLYPRLSPGGIII 209 (248)
T ss_dssp TSSTTEEEEES-HHHHCCC-TT--EEEEEE---S------------------------HHHHHHHHHHHGGGEEEEEEEE
T ss_pred CCcccEEEECCcchhhhccCCCccEEEEEEeccc------------------------hHHHHHHHHHHHhhcCCCeEEE
Confidence 5 346999999987654432 3456666666332 1223456899999999999999
Q ss_pred EEcCCCCchhhHHHHHHHHhhCC
Q 009708 463 YSTCSIDPEENEERVEAFLLRHP 485 (528)
Q Consensus 463 ysTcs~~~~Ene~~v~~~l~~~~ 485 (528)
+-.-.. +.. ...|.+|.++|.
T Consensus 210 ~DDY~~-~gc-r~AvdeF~~~~g 230 (248)
T PF05711_consen 210 FDDYGH-PGC-RKAVDEFRAEHG 230 (248)
T ss_dssp ESSTTT-HHH-HHHHHHHHHHTT
T ss_pred EeCCCC-hHH-HHHHHHHHHHcC
Confidence 877655 333 456788988873
|
TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A. |
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=93.51 E-value=0.098 Score=51.23 Aligned_cols=73 Identities=12% Similarity=0.103 Sum_probs=44.7
Q ss_pred EEEEcCccccccccC-CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 389 IRTIHADLRTFADNS-TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 389 i~~~~~D~~~~~~~~-~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
++++++|+.+..... .+++|+|+.|||+. .|.-.+... .+ . .....+.....+.++.++|||||.++. -|+
T Consensus 2 ~~l~~gD~le~l~~lpd~SVDLIiTDPPY~-i~~~~~~~~-~~--~---~~~~~ew~~~~l~E~~RVLKpgg~l~i-f~~ 73 (227)
T PRK13699 2 SRFILGNCIDVMARFPDNAVDFILTDPPYL-VGFRDRQGR-TI--A---GDKTDEWLQPACNEMYRVLKKDALMVS-FYG 73 (227)
T ss_pred CeEEechHHHHHHhCCccccceEEeCCCcc-cccccCCCc-cc--c---cccHHHHHHHHHHHHHHHcCCCCEEEE-Eec
Confidence 357889998765433 57899999999994 222111000 00 0 011223445779999999999987763 355
Q ss_pred CC
Q 009708 468 ID 469 (528)
Q Consensus 468 ~~ 469 (528)
..
T Consensus 74 ~~ 75 (227)
T PRK13699 74 WN 75 (227)
T ss_pred cc
Confidence 44
|
|
| >COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=93.35 E-value=0.42 Score=45.09 Aligned_cols=128 Identities=25% Similarity=0.332 Sum_probs=78.6
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCC---cEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc-----CCCC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQ---GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-----STVK 406 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~---~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~-----~~~~ 406 (528)
..+.|++.|+.-||.+++.|..|-.. .+|+++|++-.-+.-+... .+ .|.++.++.++..-. ....
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----~p-~i~f~egss~dpai~eqi~~~~~~ 142 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----VP-DILFIEGSSTDPAIAEQIRRLKNE 142 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----CC-CeEEEeCCCCCHHHHHHHHHHhcC
Confidence 34689999999999999988866433 4899999986554332221 44 489999998775321 1223
Q ss_pred CCEEE--EcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCC--c---------hhh
Q 009708 407 CDKVL--LDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSID--P---------EEN 473 (528)
Q Consensus 407 fD~Vl--~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~--~---------~En 473 (528)
+-.|+ +|.-.| .+.+ + .-|+....+|.-|-++|.-..-+. | ...
T Consensus 143 y~kIfvilDsdHs----------------~~hv--L-----Ael~~~~pllsaG~Y~vVeDs~v~dlp~~~~p~~~g~gP 199 (237)
T COG3510 143 YPKIFVILDSDHS----------------MEHV--L-----AELKLLAPLLSAGDYLVVEDSNVNDLPGPVLPWRFGGGP 199 (237)
T ss_pred CCcEEEEecCCch----------------HHHH--H-----HHHHHhhhHhhcCceEEEecccccCCCCcccchhcCCCh
Confidence 44554 332221 1111 1 125555667777888876544322 1 112
Q ss_pred HHHHHHHHhhCC-CceEec
Q 009708 474 EERVEAFLLRHP-EFSIDP 491 (528)
Q Consensus 474 e~~v~~~l~~~~-~~~~~~ 491 (528)
-..|+.|++.|| +|+...
T Consensus 200 ~~AVe~ylr~~p~~yEiD~ 218 (237)
T COG3510 200 YEAVEAYLREFPQDYEIDT 218 (237)
T ss_pred HHHHHHHHHhCCcccccch
Confidence 357889999999 787643
|
|
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.89 E-value=0.34 Score=48.65 Aligned_cols=109 Identities=10% Similarity=0.076 Sum_probs=82.3
Q ss_pred CCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHc--CCC-ccEEEEcCccccccccC-CCCCCEEE
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLH--QVN-SVIRTIHADLRTFADNS-TVKCDKVL 411 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~--g~~-~~i~~~~~D~~~~~~~~-~~~fD~Vl 411 (528)
.++||=+|-|-|+.....+.+ ..-+.+.-+|++...++..++-+..+ |.+ .+|.+..+|...+.... .++||+|+
T Consensus 122 pkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVii 200 (337)
T KOG1562|consen 122 PKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVII 200 (337)
T ss_pred CCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEEE
Confidence 468999999999998777765 44567999999999999888876654 332 35888889998887654 57899999
Q ss_pred EcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEE
Q 009708 412 LDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463 (528)
Q Consensus 412 ~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvy 463 (528)
+|-.- -........|+.+.....+.||+||+++.
T Consensus 201 ~dssd------------------pvgpa~~lf~~~~~~~v~~aLk~dgv~~~ 234 (337)
T KOG1562|consen 201 TDSSD------------------PVGPACALFQKPYFGLVLDALKGDGVVCT 234 (337)
T ss_pred EecCC------------------ccchHHHHHHHHHHHHHHHhhCCCcEEEE
Confidence 87221 11233455777888889999999998863
|
|
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=92.83 E-value=0.51 Score=48.87 Aligned_cols=96 Identities=11% Similarity=0.154 Sum_probs=57.9
Q ss_pred CCCCCCeEEEeCCccchH-HHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEE
Q 009708 332 DPQPGQSIVDCCAAPGGK-TLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKV 410 (528)
Q Consensus 332 ~~~~g~~VLDl~aG~G~k-t~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~V 410 (528)
.+++|++||=.|||+=|. ++++++.+.+..+|+++|.++.+++.++. .+.. ..+ .+ +.. ...+|+|
T Consensus 160 ~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~~---~~~-~~---~~~--~~g~d~v 226 (341)
T cd08237 160 AHKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADET---YLI-DD---IPE--DLAVDHA 226 (341)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCce---eeh-hh---hhh--ccCCcEE
Confidence 357899999999765332 34555543334689999999999988764 3322 111 11 111 1248987
Q ss_pred EEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 411 LLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 411 l~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
+ | |+|... . ...+..+.++|++||++++.-
T Consensus 227 i-D--~~G~~~---~-------------------~~~~~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 227 F-E--CVGGRG---S-------------------QSAINQIIDYIRPQGTIGLMG 256 (341)
T ss_pred E-E--CCCCCc---c-------------------HHHHHHHHHhCcCCcEEEEEe
Confidence 6 4 443100 0 113777899999999988544
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=92.66 E-value=0.13 Score=52.67 Aligned_cols=107 Identities=15% Similarity=0.137 Sum_probs=57.5
Q ss_pred CeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccc----cccccCCCCCCEEEE
Q 009708 337 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR----TFADNSTVKCDKVLL 412 (528)
Q Consensus 337 ~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~----~~~~~~~~~fD~Vl~ 412 (528)
.+|||+|+|||.-..++-...+.-..++-++.|+..-+......+..+.. ...+...|++ .++. ...|++|++
T Consensus 115 qsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~-~td~r~s~vt~dRl~lp~--ad~ytl~i~ 191 (484)
T COG5459 115 QSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTE-KTDWRASDVTEDRLSLPA--ADLYTLAIV 191 (484)
T ss_pred chhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccc-cCCCCCCccchhccCCCc--cceeehhhh
Confidence 36999999999866555444443345777888876655544433332222 1222233332 2221 234565553
Q ss_pred cCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 413 DAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 413 D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
- . ++....++..+.. .+++.+.++.|||.||++.
T Consensus 192 ~---------~---eLl~d~~ek~i~~-------~ie~lw~l~~~gg~lVivE 225 (484)
T COG5459 192 L---------D---ELLPDGNEKPIQV-------NIERLWNLLAPGGHLVIVE 225 (484)
T ss_pred h---------h---hhccccCcchHHH-------HHHHHHHhccCCCeEEEEe
Confidence 1 0 0000011122222 5889999999999999854
|
|
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=92.23 E-value=1.1 Score=45.75 Aligned_cols=100 Identities=21% Similarity=0.317 Sum_probs=60.9
Q ss_pred cCCCCCCeEEEeCCcc-chHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccc-ccccCCCCCC
Q 009708 331 VDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT-FADNSTVKCD 408 (528)
Q Consensus 331 l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~-~~~~~~~~fD 408 (528)
..++++++||..|+|. |..++++|+.+ +.+|++++.++...+.+++ .|++..+.....+... ........+|
T Consensus 161 ~~~~~~~~vli~g~g~vG~~~~~la~~~--G~~V~~~~~s~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~D 234 (338)
T cd08254 161 GEVKPGETVLVIGLGGLGLNAVQIAKAM--GAAVIAVDIKEEKLELAKE----LGADEVLNSLDDSPKDKKAAGLGGGFD 234 (338)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHH----hCCCEEEcCCCcCHHHHHHHhcCCCce
Confidence 3467888999887653 66777777764 3579999999988876643 5654311111111111 0011235689
Q ss_pred EEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 409 KVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 409 ~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
.|+- |+|.+ ..+..+++.|+++|+++..
T Consensus 235 ~vid---~~g~~-------------------------~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 235 VIFD---FVGTQ-------------------------PTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred EEEE---CCCCH-------------------------HHHHHHHHHhhcCCEEEEE
Confidence 7763 33211 1377788999999998854
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >PRK07576 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.19 E-value=2.4 Score=41.90 Aligned_cols=78 Identities=15% Similarity=0.130 Sum_probs=51.3
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
++.+||=.|+ +|+.+..+++.+. .+.+|++++.++..+......+...+. .+.++..|+.+.... ..
T Consensus 8 ~~k~ilItGa-sggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~i~~~~~~~~~~~ 84 (264)
T PRK07576 8 AGKNVVVVGG-TSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGP--EGLGVSADVRDYAAVEAAFAQIADEF 84 (264)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCC--ceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 4668888875 6677777766543 345899999998887766655555443 356778888753211 02
Q ss_pred CCCCEEEEcCC
Q 009708 405 VKCDKVLLDAP 415 (528)
Q Consensus 405 ~~fD~Vl~D~P 415 (528)
..+|.|+.++.
T Consensus 85 ~~iD~vi~~ag 95 (264)
T PRK07576 85 GPIDVLVSGAA 95 (264)
T ss_pred CCCCEEEECCC
Confidence 46899998653
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=92.11 E-value=0.81 Score=48.26 Aligned_cols=50 Identities=24% Similarity=0.285 Sum_probs=39.9
Q ss_pred HhcCCCCCCeEEEeCCcc-chHHHHHHHHcCCCcEEEEEcCChHHHHHHHHH
Q 009708 329 AVVDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNET 379 (528)
Q Consensus 329 ~~l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n 379 (528)
....+++|++||..|||+ |..+.++|+.++ ..+|+++|.++.+++.+++.
T Consensus 178 ~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g-~~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 178 ELAEVKPGDTVAVWGCGPVGLFAARSAKLLG-AERVIAIDRVPERLEMARSH 228 (386)
T ss_pred hhccCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHc
Confidence 445677899999999888 778888888753 34799999999998887764
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.58 E-value=0.29 Score=44.13 Aligned_cols=71 Identities=18% Similarity=0.191 Sum_probs=57.4
Q ss_pred HHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccc
Q 009708 328 VAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400 (528)
Q Consensus 328 ~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~ 400 (528)
.+++.-.+..+.+|+|+|-|...+++++. +.-.-+++|+++..+...+-.+-+.|+...+.+..-|..++.
T Consensus 65 LSll~~n~~GklvDlGSGDGRiVlaaar~--g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~d 135 (199)
T KOG4058|consen 65 LSLLRGNPKGKLVDLGSGDGRIVLAAARC--GLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVD 135 (199)
T ss_pred HHHccCCCCCcEEeccCCCceeehhhhhh--CCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcc
Confidence 34555566668999999999999988875 234679999999999999999999999877777777776544
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=91.44 E-value=1.5 Score=43.85 Aligned_cols=112 Identities=20% Similarity=0.134 Sum_probs=65.0
Q ss_pred CeEEEeCCcc--chHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC-----CCCCC-
Q 009708 337 QSIVDCCAAP--GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS-----TVKCD- 408 (528)
Q Consensus 337 ~~VLDl~aG~--G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~-----~~~fD- 408 (528)
...||+|||- -+.+=++|+...+..+|+-||.+|-.+..++..+....- +...++++|+++...-. .+-+|
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~r~p~~iL~~p~~~~~lD~ 148 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQADLRDPEAILAHPEVRGLLDF 148 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--TT-HHHHHCSHHHHCC--T
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCCCCHHHHhcCHHHHhcCCC
Confidence 4799999994 345667888888899999999999999988887766532 24789999998743211 11122
Q ss_pred ----EEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCC
Q 009708 409 ----KVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 468 (528)
Q Consensus 409 ----~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~ 468 (528)
.|++ .|++..-+| .++. ..++......|.||.+|++|..+-
T Consensus 149 ~rPVavll------~~vLh~v~D------~~dp-------~~iv~~l~d~lapGS~L~ish~t~ 193 (267)
T PF04672_consen 149 DRPVAVLL------VAVLHFVPD------DDDP-------AGIVARLRDALAPGSYLAISHATD 193 (267)
T ss_dssp TS--EEEE------CT-GGGS-C------GCTH-------HHHHHHHHCCS-TT-EEEEEEEB-
T ss_pred CCCeeeee------eeeeccCCC------ccCH-------HHHHHHHHHhCCCCceEEEEecCC
Confidence 2332 233333332 1222 345888999999999999887664
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >COG2933 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.89 E-value=0.51 Score=46.62 Aligned_cols=70 Identities=24% Similarity=0.240 Sum_probs=53.8
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEE
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 412 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~ 412 (528)
..+|..-.|+||.|||.|-++.++ .-.|++||.-+-+- ++-. .+.|+.+..|.+.+.+. ..+.|-.+|
T Consensus 209 L~~~M~avDLGAcPGGWTyqLVkr---~m~V~aVDng~ma~-----sL~d---tg~v~h~r~DGfk~~P~-r~~idWmVC 276 (358)
T COG2933 209 LAPGMWAVDLGACPGGWTYQLVKR---NMRVYAVDNGPMAQ-----SLMD---TGQVTHLREDGFKFRPT-RSNIDWMVC 276 (358)
T ss_pred hcCCceeeecccCCCccchhhhhc---ceEEEEeccchhhh-----hhhc---ccceeeeeccCcccccC-CCCCceEEe
Confidence 457889999999999999999875 57999999765432 2222 23578889999998763 467899998
Q ss_pred cC
Q 009708 413 DA 414 (528)
Q Consensus 413 D~ 414 (528)
|-
T Consensus 277 Dm 278 (358)
T COG2933 277 DM 278 (358)
T ss_pred eh
Confidence 83
|
|
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.83 E-value=5.2 Score=39.42 Aligned_cols=119 Identities=13% Similarity=0.118 Sum_probs=75.8
Q ss_pred HhcCCCCCCeEEEeCCccchHHHHHHHHcCCC---cEEEEEcCChHHHHHHHHHHHHc--CCCccEEEEcCccccccccC
Q 009708 329 AVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQ---GLVYAIDINKGRLRILNETAKLH--QVNSVIRTIHADLRTFADNS 403 (528)
Q Consensus 329 ~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~---~~v~avD~s~~~l~~~~~n~~~~--g~~~~i~~~~~D~~~~~~~~ 403 (528)
++.....+...+|+|+|+-.||..+...+... .+.+.+|+|...++...+.+.+- +++ +.-+++|........
T Consensus 72 Eia~~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~--v~~l~~~~~~~La~~ 149 (321)
T COG4301 72 EIASITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLE--VNALCGDYELALAEL 149 (321)
T ss_pred HHHHhhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCe--EeehhhhHHHHHhcc
Confidence 33444457899999999999999887766542 36899999999887655544432 333 566777775433222
Q ss_pred CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 404 ~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
++.--++++ -+-|..|- .++.+... +|.+....+.||-.+..-+--
T Consensus 150 ~~~~~Rl~~-flGStlGN----------~tp~e~~~-------Fl~~l~~a~~pGd~~LlGvDl 195 (321)
T COG4301 150 PRGGRRLFV-FLGSTLGN----------LTPGECAV-------FLTQLRGALRPGDYFLLGVDL 195 (321)
T ss_pred cCCCeEEEE-EecccccC----------CChHHHHH-------HHHHHHhcCCCcceEEEeccc
Confidence 223334443 23344454 33344333 588888899999988866543
|
|
| >PRK06914 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.52 E-value=4.7 Score=39.98 Aligned_cols=82 Identities=17% Similarity=0.065 Sum_probs=53.7
Q ss_pred CCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc--------CCCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN--------STVK 406 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~--------~~~~ 406 (528)
+.+||=.|+ +|+.+..++..+- .+.+|++++.++..++.........+....+.++.+|+.+.... ..++
T Consensus 3 ~k~~lItGa-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~ 81 (280)
T PRK06914 3 KKIAIVTGA-SSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIGR 81 (280)
T ss_pred CCEEEEECC-CchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcCC
Confidence 445666664 5566777665443 34589999999888877766666555544588888998764321 0246
Q ss_pred CCEEEEcCCCCC
Q 009708 407 CDKVLLDAPCSG 418 (528)
Q Consensus 407 fD~Vl~D~Pcsg 418 (528)
.|.|+..+....
T Consensus 82 id~vv~~ag~~~ 93 (280)
T PRK06914 82 IDLLVNNAGYAN 93 (280)
T ss_pred eeEEEECCcccc
Confidence 799988765443
|
|
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=90.41 E-value=2.8 Score=43.11 Aligned_cols=93 Identities=18% Similarity=0.091 Sum_probs=58.0
Q ss_pred hcCCCCCCeEEEeCCccch-HHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCC
Q 009708 330 VVDPQPGQSIVDCCAAPGG-KTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCD 408 (528)
Q Consensus 330 ~l~~~~g~~VLDl~aG~G~-kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD 408 (528)
...+++|++||=.|+|+-+ .+.++|+.+ +.+|++++.++++++.+ +.+|.+..+ .. .+. ..+.+|
T Consensus 160 ~~~~~~g~~VlV~G~g~iG~~a~~~a~~~--G~~vi~~~~~~~~~~~a----~~~Ga~~vi---~~--~~~---~~~~~d 225 (329)
T TIGR02822 160 RASLPPGGRLGLYGFGGSAHLTAQVALAQ--GATVHVMTRGAAARRLA----LALGAASAG---GA--YDT---PPEPLD 225 (329)
T ss_pred hcCCCCCCEEEEEcCCHHHHHHHHHHHHC--CCeEEEEeCChHHHHHH----HHhCCceec---cc--ccc---Ccccce
Confidence 3567889999998875433 445566653 34799999999987655 457776422 11 111 113578
Q ss_pred EEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 409 KVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 409 ~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
.++. |++.| ..+..+++.|++||+++..
T Consensus 226 ~~i~---~~~~~-------------------------~~~~~~~~~l~~~G~~v~~ 253 (329)
T TIGR02822 226 AAIL---FAPAG-------------------------GLVPPALEALDRGGVLAVA 253 (329)
T ss_pred EEEE---CCCcH-------------------------HHHHHHHHhhCCCcEEEEE
Confidence 7654 22211 1377788999999998753
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >PRK08213 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.28 E-value=4.2 Score=39.84 Aligned_cols=80 Identities=18% Similarity=0.081 Sum_probs=55.3
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCC-CcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~-~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
.+.+||=.| |+|+.+.++++.+-. +.+|+.++.+...++.+...+...+. .+.++.+|+.+.... ..
T Consensus 11 ~~k~ilItG-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~--~~~~~~~Dl~d~~~i~~~~~~~~~~~ 87 (259)
T PRK08213 11 SGKTALVTG-GSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGI--DALWIAADVADEADIERLAEETLERF 87 (259)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCC--eEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 366788888 567888888876642 35899999998888777766665443 367788888764211 01
Q ss_pred CCCCEEEEcCCCC
Q 009708 405 VKCDKVLLDAPCS 417 (528)
Q Consensus 405 ~~fD~Vl~D~Pcs 417 (528)
..+|.|+..+..+
T Consensus 88 ~~id~vi~~ag~~ 100 (259)
T PRK08213 88 GHVDILVNNAGAT 100 (259)
T ss_pred CCCCEEEECCCCC
Confidence 4689999876553
|
|
| >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=90.22 E-value=2.1 Score=44.32 Aligned_cols=50 Identities=22% Similarity=0.355 Sum_probs=36.7
Q ss_pred cCCCCCCeEEEeCCcc-chHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCC
Q 009708 331 VDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN 386 (528)
Q Consensus 331 l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~ 386 (528)
..+++|++||=.|||+ |..++++|+.++ .+|+++|.++++++.+++ +|.+
T Consensus 162 ~~~~~g~~VlV~G~G~vG~~a~~~a~~~G--~~vi~~~~~~~~~~~~~~----~Ga~ 212 (349)
T TIGR03201 162 AGLKKGDLVIVIGAGGVGGYMVQTAKAMG--AAVVAIDIDPEKLEMMKG----FGAD 212 (349)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHH----hCCc
Confidence 4567899999999865 555566676643 479999999999877643 4654
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.12 E-value=0.55 Score=47.01 Aligned_cols=98 Identities=20% Similarity=0.182 Sum_probs=64.3
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDA 414 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~ 414 (528)
.|..++|.|||.|-.+. ..+...++++|++...+..++ +.|.+ .+..+|+.+.+.. ...||.++.=+
T Consensus 45 ~gsv~~d~gCGngky~~-----~~p~~~~ig~D~c~~l~~~ak----~~~~~---~~~~ad~l~~p~~-~~s~d~~lsia 111 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYLG-----VNPLCLIIGCDLCTGLLGGAK----RSGGD---NVCRADALKLPFR-EESFDAALSIA 111 (293)
T ss_pred CcceeeecccCCcccCc-----CCCcceeeecchhhhhccccc----cCCCc---eeehhhhhcCCCC-CCccccchhhh
Confidence 48899999999986542 124557999999888776654 23322 4678899887754 36799877421
Q ss_pred CCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCE-EEEE
Q 009708 415 PCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGV-LVYS 464 (528)
Q Consensus 415 Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~-Lvys 464 (528)
-- .|.-+... -...+++..+.|+|||. +||+
T Consensus 112 vi------------hhlsT~~R-------R~~~l~e~~r~lrpgg~~lvyv 143 (293)
T KOG1331|consen 112 VI------------HHLSTRER-------RERALEELLRVLRPGGNALVYV 143 (293)
T ss_pred hh------------hhhhhHHH-------HHHHHHHHHHHhcCCCceEEEE
Confidence 11 11111122 23468899999999996 5555
|
|
| >PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function | Back alignment and domain information |
|---|
Probab=90.09 E-value=0.21 Score=44.10 Aligned_cols=78 Identities=23% Similarity=0.375 Sum_probs=51.3
Q ss_pred EEEEcCccccccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCC
Q 009708 389 IRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 468 (528)
Q Consensus 389 i~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~ 468 (528)
+++..+|+.+........||+|++|+-. -.++|+ .|. .++++...+++++||+++-.||+
T Consensus 33 L~L~~gDa~~~l~~l~~~~Da~ylDgFs-----P~~nPe-lWs-------------~e~~~~l~~~~~~~~~l~Tys~a- 92 (124)
T PF05430_consen 33 LTLWFGDAREMLPQLDARFDAWYLDGFS-----PAKNPE-LWS-------------EELFKKLARLSKPGGTLATYSSA- 92 (124)
T ss_dssp EEEEES-HHHHHHHB-T-EEEEEE-SS------TTTSGG-GSS-------------HHHHHHHHHHEEEEEEEEES--B-
T ss_pred EEEEEcHHHHHHHhCcccCCEEEecCCC-----CcCCcc-cCC-------------HHHHHHHHHHhCCCcEEEEeech-
Confidence 6778889987666555789999999643 357787 343 44688889999999998854442
Q ss_pred CchhhHHHHHHHHhhCCCceEecCC
Q 009708 469 DPEENEERVEAFLLRHPEFSIDPAD 493 (528)
Q Consensus 469 ~~~Ene~~v~~~l~~~~~~~~~~~~ 493 (528)
..|..-|... +|.+...+
T Consensus 93 ------~~Vr~~L~~a-GF~v~~~~ 110 (124)
T PF05430_consen 93 ------GAVRRALQQA-GFEVEKVP 110 (124)
T ss_dssp ------HHHHHHHHHC-TEEEEEEE
T ss_pred ------HHHHHHHHHc-CCEEEEcC
Confidence 2466667664 68877654
|
; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A. |
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=90.07 E-value=1.8 Score=44.92 Aligned_cols=95 Identities=14% Similarity=0.126 Sum_probs=56.6
Q ss_pred CCCCCeEEEeCCcc-chHHHHHHHHcCCCcEEEEEcC---ChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCC
Q 009708 333 PQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDI---NKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCD 408 (528)
Q Consensus 333 ~~~g~~VLDl~aG~-G~kt~~la~~~~~~~~v~avD~---s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD 408 (528)
.++|++||=.|+|+ |..+.++|+.++ .+|++++. ++.+++.+ +.+|.+. +.....|... . .....||
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G--~~vi~~~~~~~~~~~~~~~----~~~Ga~~-v~~~~~~~~~-~-~~~~~~d 240 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLRG--FEVYVLNRRDPPDPKADIV----EELGATY-VNSSKTPVAE-V-KLVGEFD 240 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHH----HHcCCEE-ecCCccchhh-h-hhcCCCC
Confidence 45788999888754 345566666643 47999987 67777655 4466542 2111111111 0 1124689
Q ss_pred EEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 409 KVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 409 ~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
.||- |+|.. ..+..+.+.|++||+++..
T Consensus 241 ~vid---~~g~~-------------------------~~~~~~~~~l~~~G~~v~~ 268 (355)
T cd08230 241 LIIE---ATGVP-------------------------PLAFEALPALAPNGVVILF 268 (355)
T ss_pred EEEE---CcCCH-------------------------HHHHHHHHHccCCcEEEEE
Confidence 8774 43311 1367788999999998754
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.94 E-value=3.7 Score=39.74 Aligned_cols=78 Identities=21% Similarity=0.074 Sum_probs=51.8
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
.+.+||=.| |+|+.+.+++..+. .+.+|++++.++..+......++..+. .+.++.+|+.+.... ..
T Consensus 6 ~~~~vlItG-a~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~ 82 (250)
T PRK12939 6 AGKRALVTG-AARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGG--RAHAIAADLADPASVQRFFDAAAAAL 82 (250)
T ss_pred CCCEEEEeC-CCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 356777555 46788888877653 245789999998887776666554442 378888898764311 01
Q ss_pred CCCCEEEEcCC
Q 009708 405 VKCDKVLLDAP 415 (528)
Q Consensus 405 ~~fD~Vl~D~P 415 (528)
+++|.|+..+-
T Consensus 83 ~~id~vi~~ag 93 (250)
T PRK12939 83 GGLDGLVNNAG 93 (250)
T ss_pred CCCCEEEECCC
Confidence 46899987543
|
|
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=89.88 E-value=2.1 Score=44.83 Aligned_cols=102 Identities=20% Similarity=0.226 Sum_probs=59.7
Q ss_pred hcCCCCCCeEEEeCCcc-chHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccc-ccccCCCCC
Q 009708 330 VVDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT-FADNSTVKC 407 (528)
Q Consensus 330 ~l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~-~~~~~~~~f 407 (528)
...+++|++||=.|+|+ |..+.++|+.+ +..+|+++|.++.+++.++ .+|.+..+.....|... +.....+.+
T Consensus 186 ~~~i~~g~~VlV~G~G~vG~~a~~lak~~-G~~~Vi~~~~~~~r~~~a~----~~Ga~~~i~~~~~~~~~~i~~~~~~g~ 260 (371)
T cd08281 186 TAGVRPGQSVAVVGLGGVGLSALLGAVAA-GASQVVAVDLNEDKLALAR----ELGATATVNAGDPNAVEQVRELTGGGV 260 (371)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCcEEEEcCCHHHHHHHH----HcCCceEeCCCchhHHHHHHHHhCCCC
Confidence 34577899988888653 33445555553 2336999999999988765 35765322211112111 111112368
Q ss_pred CEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 408 DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 408 D~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
|+|+- |+|.. ..+..+++.+++||+++..
T Consensus 261 d~vid---~~G~~-------------------------~~~~~~~~~l~~~G~iv~~ 289 (371)
T cd08281 261 DYAFE---MAGSV-------------------------PALETAYEITRRGGTTVTA 289 (371)
T ss_pred CEEEE---CCCCh-------------------------HHHHHHHHHHhcCCEEEEE
Confidence 98873 44321 1266778889999998854
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.61 E-value=2.9 Score=42.56 Aligned_cols=39 Identities=13% Similarity=-0.143 Sum_probs=29.8
Q ss_pred CCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHH
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILN 377 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~ 377 (528)
.-+||-.|||.|..+..+|.. +-.+-|.|.|--|+-...
T Consensus 151 ki~iLvPGaGlGRLa~dla~~---G~~~qGNEfSy~Mli~S~ 189 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACL---GFKCQGNEFSYFMLICSS 189 (369)
T ss_pred CceEEecCCCchhHHHHHHHh---cccccccHHHHHHHHHHH
Confidence 347999999999999999986 345667788777764433
|
|
| >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.61 E-value=2.7 Score=43.31 Aligned_cols=103 Identities=17% Similarity=0.237 Sum_probs=59.6
Q ss_pred hcCCCCCCeEEEeCCcc-chHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc-CCCCC
Q 009708 330 VVDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKC 407 (528)
Q Consensus 330 ~l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~-~~~~f 407 (528)
....++|++||=.|+|+ |..++++|+.++ ...|++++.++.+++.++ ..|.+..+.....+....... ....+
T Consensus 155 ~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~----~~Ga~~~i~~~~~~~~~~~~~~~~~~~ 229 (347)
T PRK10309 155 LAQGCEGKNVIIIGAGTIGLLAIQCAVALG-AKSVTAIDINSEKLALAK----SLGAMQTFNSREMSAPQIQSVLRELRF 229 (347)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHHH----HcCCceEecCcccCHHHHHHHhcCCCC
Confidence 34567888988887654 224455666543 335899999999887653 456543111111111111111 12458
Q ss_pred CEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 408 DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 408 D~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
|.+++| |+|.. ..+..+.++|++||+++..
T Consensus 230 d~~v~d--~~G~~-------------------------~~~~~~~~~l~~~G~iv~~ 259 (347)
T PRK10309 230 DQLILE--TAGVP-------------------------QTVELAIEIAGPRAQLALV 259 (347)
T ss_pred CeEEEE--CCCCH-------------------------HHHHHHHHHhhcCCEEEEE
Confidence 866666 54421 1367788999999998864
|
|
| >COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.55 E-value=5.6 Score=39.23 Aligned_cols=121 Identities=13% Similarity=0.139 Sum_probs=76.8
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC---CCCCCEE
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS---TVKCDKV 410 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~---~~~fD~V 410 (528)
.+|.. |...+|+=-.+.++. ..+-++.++|..|+=...+++|+. +.. ++.+..+|........ .++=-+|
T Consensus 88 N~~~~-l~~YpGSP~lA~~ll---R~qDRl~l~ELHp~D~~~L~~~f~--~d~-~vrv~~~DG~~~l~a~LPP~erRglV 160 (279)
T COG2961 88 NPGGG-LRYYPGSPLLARQLL---REQDRLVLTELHPSDAPLLRNNFA--GDR-RVRVLRGDGFLALKAHLPPKERRGLV 160 (279)
T ss_pred CCCCC-cccCCCCHHHHHHHc---chhceeeeeecCccHHHHHHHHhC--CCc-ceEEEecCcHHHHhhhCCCCCcceEE
Confidence 34444 777777755554444 446799999999999999999987 334 4889999987643221 2445789
Q ss_pred EEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHHHhhCC
Q 009708 411 LLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHP 485 (528)
Q Consensus 411 l~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~l~~~~ 485 (528)
++|||+- ...+...+.+ -|+.+++-.. +|+. |-+.|.-.-+.+..|++...
T Consensus 161 LIDPPfE---------------~~~eY~rvv~----~l~~~~kRf~-~g~y----aiWYPik~r~~~~~f~~~L~ 211 (279)
T COG2961 161 LIDPPFE---------------LKDEYQRVVE----ALAEAYKRFA-TGTY----AIWYPIKDRRQIRRFLRALE 211 (279)
T ss_pred EeCCCcc---------------cccHHHHHHH----HHHHHHHhhc-CceE----EEEEeecchHHHHHHHHHHh
Confidence 9999992 1123333322 2444444433 4543 33566666677888877643
|
|
| >PRK07063 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.51 E-value=6.7 Score=38.40 Aligned_cols=79 Identities=15% Similarity=0.090 Sum_probs=53.3
Q ss_pred CCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 405 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~~ 405 (528)
+.+||=.|++ |+.+.+++..+- .+.+|+.++.++..++.+...+...+...++.++..|+.+.... ..+
T Consensus 7 ~k~vlVtGas-~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 85 (260)
T PRK07063 7 GKVALVTGAA-QGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAFG 85 (260)
T ss_pred CCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 5678888865 667777776553 34589999999988887777766532233477888888764211 124
Q ss_pred CCCEEEEcCC
Q 009708 406 KCDKVLLDAP 415 (528)
Q Consensus 406 ~fD~Vl~D~P 415 (528)
.+|.++.++-
T Consensus 86 ~id~li~~ag 95 (260)
T PRK07063 86 PLDVLVNNAG 95 (260)
T ss_pred CCcEEEECCC
Confidence 6899988654
|
|
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.49 E-value=2.4 Score=44.07 Aligned_cols=100 Identities=22% Similarity=0.181 Sum_probs=61.7
Q ss_pred hcCCCCCCeEEEeCC--ccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcC-cccccc-ccCCC
Q 009708 330 VVDPQPGQSIVDCCA--APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA-DLRTFA-DNSTV 405 (528)
Q Consensus 330 ~l~~~~g~~VLDl~a--G~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~-D~~~~~-~~~~~ 405 (528)
...+++|++||=.|+ |.|..++++|+.+ +.+|++++.++.+.+.+++ .+|.+..+..... |..... .....
T Consensus 153 ~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~--G~~Vi~~~~~~~k~~~~~~---~lGa~~vi~~~~~~~~~~~i~~~~~~ 227 (348)
T PLN03154 153 VCSPKKGDSVFVSAASGAVGQLVGQLAKLH--GCYVVGSAGSSQKVDLLKN---KLGFDEAFNYKEEPDLDAALKRYFPE 227 (348)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHH---hcCCCEEEECCCcccHHHHHHHHCCC
Confidence 345788999988887 3566777888875 3579999999888766542 3576542221111 222111 11123
Q ss_pred CCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEE
Q 009708 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463 (528)
Q Consensus 406 ~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvy 463 (528)
.+|.|+ | |.|.. .+..+++.|++||+++.
T Consensus 228 gvD~v~-d--~vG~~--------------------------~~~~~~~~l~~~G~iv~ 256 (348)
T PLN03154 228 GIDIYF-D--NVGGD--------------------------MLDAALLNMKIHGRIAV 256 (348)
T ss_pred CcEEEE-E--CCCHH--------------------------HHHHHHHHhccCCEEEE
Confidence 589887 3 43311 26677888999999884
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.47 E-value=0.69 Score=49.61 Aligned_cols=130 Identities=13% Similarity=0.170 Sum_probs=85.0
Q ss_pred CCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc------CCCCCCE
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN------STVKCDK 409 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~------~~~~fD~ 409 (528)
+..+|=+|-|.|+....+-..++ ...++||+++|.+++.+..++....-. +..+...|..++... ....||+
T Consensus 296 ~~~~lvvg~ggG~l~sfl~~~~p-~~~i~~ve~dP~~l~va~q~f~f~q~~-r~~V~i~dGl~~~~~~~k~~~~~~~~dv 373 (482)
T KOG2352|consen 296 GGKQLVVGLGGGGLPSFLHMSLP-KFQITAVEIDPEMLEVATQYFGFMQSD-RNKVHIADGLDFLQRTAKSQQEDICPDV 373 (482)
T ss_pred cCcEEEEecCCCccccceeeecC-ccceeEEEEChhHhhccHhhhchhhhh-hhhhhHhhchHHHHHHhhccccccCCcE
Confidence 44678888888998887766544 578999999999999999988765433 345566676655322 2457999
Q ss_pred EEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHH
Q 009708 410 VLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAF 480 (528)
Q Consensus 410 Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~ 480 (528)
++.|.-.+-.+-+.--| +..+ -..+|..+...|.|-|.+++.-.+-...-+.++...+
T Consensus 374 l~~dvds~d~~g~~~pp-------~~fv------a~~~l~~~k~~l~p~g~f~inlv~r~~~~~~~~~~~l 431 (482)
T KOG2352|consen 374 LMVDVDSKDSHGMQCPP-------PAFV------AQVALQPVKMILPPRGMFIINLVTRNSSFKDEVLMNL 431 (482)
T ss_pred EEEECCCCCcccCcCCc-------hHHH------HHHHHHHHhhccCccceEEEEEecCCcchhHHHHHhh
Confidence 99986543222221111 1122 2346888899999999887655544444455554433
|
|
| >PRK07533 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=89.19 E-value=5.2 Score=39.40 Aligned_cols=78 Identities=12% Similarity=-0.043 Sum_probs=49.7
Q ss_pred CCCeEEEeCCccc-hHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------C
Q 009708 335 PGQSIVDCCAAPG-GKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------S 403 (528)
Q Consensus 335 ~g~~VLDl~aG~G-~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~ 403 (528)
.|.++|=.|+++| |.+..++..+- .+.+|+.++.+....+.+++..+..+ . +.++..|+.+.... .
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~--~-~~~~~~D~~~~~~v~~~~~~~~~~ 85 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELD--A-PIFLPLDVREPGQLEAVFARIAEE 85 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhc--c-ceEEecCcCCHHHHHHHHHHHHHH
Confidence 3678999999884 88887776653 34578888888655444444433332 2 34677787764211 1
Q ss_pred CCCCCEEEEcCC
Q 009708 404 TVKCDKVLLDAP 415 (528)
Q Consensus 404 ~~~fD~Vl~D~P 415 (528)
.+..|.++.++-
T Consensus 86 ~g~ld~lv~nAg 97 (258)
T PRK07533 86 WGRLDFLLHSIA 97 (258)
T ss_pred cCCCCEEEEcCc
Confidence 256899998764
|
|
| >PRK06940 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.18 E-value=5.2 Score=39.92 Aligned_cols=76 Identities=17% Similarity=0.113 Sum_probs=52.0
Q ss_pred CeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc--------CCCCCC
Q 009708 337 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN--------STVKCD 408 (528)
Q Consensus 337 ~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~--------~~~~fD 408 (528)
..+|=.|+ |+.+.++++.+..+.+|+.+|.++..++.+.+.++..+. .+.++..|+.+.... ..+.+|
T Consensus 3 k~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dv~d~~~i~~~~~~~~~~g~id 78 (275)
T PRK06940 3 EVVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAGF--DVSTQEVDVSSRESVKALAATAQTLGPVT 78 (275)
T ss_pred CEEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCC--eEEEEEeecCCHHHHHHHHHHHHhcCCCC
Confidence 34555564 589999998886667899999998887766666655443 367788888764211 124689
Q ss_pred EEEEcCCC
Q 009708 409 KVLLDAPC 416 (528)
Q Consensus 409 ~Vl~D~Pc 416 (528)
.++.++-.
T Consensus 79 ~li~nAG~ 86 (275)
T PRK06940 79 GLVHTAGV 86 (275)
T ss_pred EEEECCCc
Confidence 99887643
|
|
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=89.10 E-value=3.6 Score=41.16 Aligned_cols=99 Identities=18% Similarity=0.128 Sum_probs=57.1
Q ss_pred cCCCCCCeEEEeCCcc-chHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccc-cccc-CCCCC
Q 009708 331 VDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT-FADN-STVKC 407 (528)
Q Consensus 331 l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~-~~~~-~~~~f 407 (528)
....+|++||=.|+|+ |..++++|+.+ +...|+++|.++.+++.+++ +|.+..+.. .+... .... ....+
T Consensus 116 ~~~~~g~~VlV~G~G~vG~~~~~~ak~~-G~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~--~~~~~~~~~~~~~~g~ 188 (280)
T TIGR03366 116 AGDLKGRRVLVVGAGMLGLTAAAAAAAA-GAARVVAADPSPDRRELALS----FGATALAEP--EVLAERQGGLQNGRGV 188 (280)
T ss_pred ccCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHH----cCCcEecCc--hhhHHHHHHHhCCCCC
Confidence 4456899999887643 22334555543 23359999999998876654 565431111 11101 1100 12358
Q ss_pred CEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 408 DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 408 D~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
|+|+- |+|.. ..+..+.+.++++|+++..
T Consensus 189 d~vid---~~G~~-------------------------~~~~~~~~~l~~~G~iv~~ 217 (280)
T TIGR03366 189 DVALE---FSGAT-------------------------AAVRACLESLDVGGTAVLA 217 (280)
T ss_pred CEEEE---CCCCh-------------------------HHHHHHHHHhcCCCEEEEe
Confidence 98763 43311 1367788899999998854
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=88.78 E-value=1.5 Score=41.53 Aligned_cols=120 Identities=21% Similarity=0.341 Sum_probs=60.9
Q ss_pred ccchHHHHHHHHcCC-CcEEEEEcCChHHHHHHHH------------HHHHcCCCccEEEEcCccccccccCCCCCCEEE
Q 009708 345 APGGKTLYMASCLSG-QGLVYAIDINKGRLRILNE------------TAKLHQVNSVIRTIHADLRTFADNSTVKCDKVL 411 (528)
Q Consensus 345 G~G~kt~~la~~~~~-~~~v~avD~s~~~l~~~~~------------n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl 411 (528)
|.|..++-+|..+.. +-+|+++|+++++++.+++ .+++..-.++..+ ..|..... ...|.++
T Consensus 7 GlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~-t~~~~~ai----~~adv~~ 81 (185)
T PF03721_consen 7 GLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRA-TTDIEEAI----KDADVVF 81 (185)
T ss_dssp --STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEE-ESEHHHHH----HH-SEEE
T ss_pred CCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchh-hhhhhhhh----hccceEE
Confidence 445544444433322 4599999999999987653 1111110112222 22332211 2478888
Q ss_pred EcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHHHhhCC
Q 009708 412 LDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHP 485 (528)
Q Consensus 412 ~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~l~~~~ 485 (528)
+-.|.-... ...+|..+ + ...++.....+++ |.+|..-+|+.+.-.++.+...+++..
T Consensus 82 I~VpTP~~~--~~~~Dls~------v-------~~a~~~i~~~l~~-~~lvV~~STvppGtt~~~~~~ile~~~ 139 (185)
T PF03721_consen 82 ICVPTPSDE--DGSPDLSY------V-------ESAIESIAPVLRP-GDLVVIESTVPPGTTEELLKPILEKRS 139 (185)
T ss_dssp E----EBET--TTSBETHH------H-------HHHHHHHHHHHCS-CEEEEESSSSSTTHHHHHHHHHHHHHC
T ss_pred EecCCCccc--cCCccHHH------H-------HHHHHHHHHHHhh-cceEEEccEEEEeeehHhhhhhhhhhc
Confidence 876652111 23333322 2 2236666777787 556656678888888888888888654
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >PRK08594 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=88.68 E-value=6.2 Score=38.90 Aligned_cols=127 Identities=13% Similarity=0.001 Sum_probs=66.3
Q ss_pred CCCeEEEeCCcc-chHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------C
Q 009708 335 PGQSIVDCCAAP-GGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------S 403 (528)
Q Consensus 335 ~g~~VLDl~aG~-G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~ 403 (528)
.|..+|=.|+++ +|.+..+++.+- .+.+|+.++.+....+.+++..+... ...+.++..|+.+.... .
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 84 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLE-GQESLLLPCDVTSDEEITACFETIKEE 84 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcC-CCceEEEecCCCCHHHHHHHHHHHHHh
Confidence 367899999884 888888887654 34578877654322223333333322 12366788888764211 1
Q ss_pred CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHH----HHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEEL----KILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 404 ~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l----~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
.+++|.++.++-....+... .+ .+..+.++.... ......+.+.+...++++|.+|..+
T Consensus 85 ~g~ld~lv~nag~~~~~~~~-~~--~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~is 147 (257)
T PRK08594 85 VGVIHGVAHCIAFANKEDLR-GE--FLETSRDGFLLAQNISAYSLTAVAREAKKLMTEGGSIVTLT 147 (257)
T ss_pred CCCccEEEECcccCCCCcCC-Cc--cccCCHHHHHHHHhhhHHHHHHHHHHHHHhcccCceEEEEc
Confidence 25789888765332111000 00 011222222221 1112234556667777788877543
|
|
| >PRK08339 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.39 E-value=9.1 Score=37.81 Aligned_cols=79 Identities=20% Similarity=0.179 Sum_probs=50.8
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc--------CCC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN--------STV 405 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~--------~~~ 405 (528)
.|.++|=.|++ |+.+..+++.+- .+.+|+.++.++..++.+.+.++... ...+.++..|+.+.... ..+
T Consensus 7 ~~k~~lItGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~i~~~~~~~~~~g 84 (263)
T PRK08339 7 SGKLAFTTASS-KGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSES-NVDVSYIVADLTKREDLERTVKELKNIG 84 (263)
T ss_pred CCCEEEEeCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHHHhhC
Confidence 36677777765 456666666543 34689999999988877776665432 12377888888764211 024
Q ss_pred CCCEEEEcCC
Q 009708 406 KCDKVLLDAP 415 (528)
Q Consensus 406 ~fD~Vl~D~P 415 (528)
..|.++.++-
T Consensus 85 ~iD~lv~nag 94 (263)
T PRK08339 85 EPDIFFFSTG 94 (263)
T ss_pred CCcEEEECCC
Confidence 6898887643
|
|
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.35 E-value=5.6 Score=38.20 Aligned_cols=75 Identities=17% Similarity=0.093 Sum_probs=50.1
Q ss_pred CCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 405 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~~ 405 (528)
+..||=.|+ +|+.+..++..+. .+.+|++++.++.....+.+.+... ..+.++.+|+.+.... ...
T Consensus 6 ~~~ilItGa-tg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (237)
T PRK07326 6 GKVALITGG-SKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK---GNVLGLAADVRDEADVQRAVDAIVAAFG 81 (237)
T ss_pred CCEEEEECC-CCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc---CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 567887774 7788888877553 2458999999988877666555432 2477888887653211 013
Q ss_pred CCCEEEEcC
Q 009708 406 KCDKVLLDA 414 (528)
Q Consensus 406 ~fD~Vl~D~ 414 (528)
.+|.|+..+
T Consensus 82 ~~d~vi~~a 90 (237)
T PRK07326 82 GLDVLIANA 90 (237)
T ss_pred CCCEEEECC
Confidence 689888754
|
|
| >PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ] | Back alignment and domain information |
|---|
Probab=88.35 E-value=1.1 Score=38.24 Aligned_cols=72 Identities=21% Similarity=0.277 Sum_probs=44.8
Q ss_pred CCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC-CC-chhhHHHHHHHHhh
Q 009708 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS-ID-PEENEERVEAFLLR 483 (528)
Q Consensus 406 ~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs-~~-~~Ene~~v~~~l~~ 483 (528)
+||+|+-|||+........... .......++.-+++.+.+++ +|.+.|.+-+ +. ..+.-..+..++..
T Consensus 2 kFD~VIGNPPY~~~~~~~~~~~--------~~~~~~dlY~~Fie~~~~ll--~G~~~~I~P~~~l~~~~~~~~lR~~l~~ 71 (106)
T PF07669_consen 2 KFDVVIGNPPYIKIKSLSKKKK--------KKKKKSDLYILFIEKSLNLL--NGYLSFITPNSFLKSGKYGKKLRKFLLN 71 (106)
T ss_pred CcCEEEECCCChhhccccchhh--------cccccCcHHHHHHHHHHHHh--CCeEEEEeChHHhCcCchHHHHHHHHhc
Confidence 6999999999954332111110 00114456667899999988 8998776654 44 45555666777765
Q ss_pred CCCc
Q 009708 484 HPEF 487 (528)
Q Consensus 484 ~~~~ 487 (528)
...+
T Consensus 72 ~~~i 75 (106)
T PF07669_consen 72 NTNI 75 (106)
T ss_pred CCCe
Confidence 5433
|
The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification |
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.30 E-value=6 Score=38.62 Aligned_cols=79 Identities=13% Similarity=0.037 Sum_probs=53.7
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
.|.++|=.|++ |+.+.+++..+- .+.+|+.++.++..++.+...++..+ +.+.++..|+.+.... ..
T Consensus 8 ~~k~vlVtGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (253)
T PRK05867 8 HGKRALITGAS-TGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSG--GKVVPVCCDVSQHQQVTSMLDQVTAEL 84 (253)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 36788888875 566766666553 34589999999988887777766655 2367788888764211 12
Q ss_pred CCCCEEEEcCCC
Q 009708 405 VKCDKVLLDAPC 416 (528)
Q Consensus 405 ~~fD~Vl~D~Pc 416 (528)
+..|.++.++..
T Consensus 85 g~id~lv~~ag~ 96 (253)
T PRK05867 85 GGIDIAVCNAGI 96 (253)
T ss_pred CCCCEEEECCCC
Confidence 478999887644
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=88.30 E-value=4.9 Score=44.11 Aligned_cols=48 Identities=17% Similarity=0.174 Sum_probs=37.1
Q ss_pred CCCCCeEEEeCCccch-HHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCC
Q 009708 333 PQPGQSIVDCCAAPGG-KTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN 386 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~-kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~ 386 (528)
..++++|+=+|||+=| .++..|..++ ..|+++|.++.+++.+++ +|.+
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lG--A~V~a~D~~~~rle~aes----lGA~ 210 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLG--AIVRAFDTRPEVAEQVES----MGAE 210 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH----cCCe
Confidence 4578999999999965 5556666654 479999999999987664 5654
|
|
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=88.16 E-value=3.7 Score=42.64 Aligned_cols=103 Identities=17% Similarity=0.162 Sum_probs=60.5
Q ss_pred hcCCCCCCeEEEeCCcc-chHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccc-ccc-CCCC
Q 009708 330 VVDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF-ADN-STVK 406 (528)
Q Consensus 330 ~l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~-~~~-~~~~ 406 (528)
...+++|++||=.|+|+ |..++++|+.+ +..+|+++|.++.+++.++ .+|.+..+.....|.... ... ....
T Consensus 171 ~~~~~~g~~VlV~G~g~vG~~a~~~ak~~-G~~~Vi~~~~~~~~~~~~~----~~Ga~~~i~~~~~~~~~~i~~~~~~~g 245 (358)
T TIGR03451 171 TGGVKRGDSVAVIGCGGVGDAAIAGAALA-GASKIIAVDIDDRKLEWAR----EFGATHTVNSSGTDPVEAIRALTGGFG 245 (358)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHH----HcCCceEEcCCCcCHHHHHHHHhCCCC
Confidence 34567899999887643 33445566653 2236999999999988774 456543222111122111 111 1235
Q ss_pred CCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 407 CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 407 fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
+|+|+ | |+|.. ..+..++..+++||+++..-
T Consensus 246 ~d~vi-d--~~g~~-------------------------~~~~~~~~~~~~~G~iv~~G 276 (358)
T TIGR03451 246 ADVVI-D--AVGRP-------------------------ETYKQAFYARDLAGTVVLVG 276 (358)
T ss_pred CCEEE-E--CCCCH-------------------------HHHHHHHHHhccCCEEEEEC
Confidence 89876 3 54421 12566788899999988543
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >PRK06949 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.92 E-value=6.7 Score=38.20 Aligned_cols=79 Identities=14% Similarity=0.119 Sum_probs=53.7
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCC-CcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~-~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
.+.+||=.| |+|+.+.+++..+.. +.+|++++.+++.++.+...+...+. .+.++..|+.+.... ..
T Consensus 8 ~~k~ilItG-asg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (258)
T PRK06949 8 EGKVALVTG-ASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEGG--AAHVVSLDVTDYQSIKAAVAHAETEA 84 (258)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEecCCCHHHHHHHHHHHHHhc
Confidence 366788887 567788888776643 34799999999988877776654432 367788888653210 12
Q ss_pred CCCCEEEEcCCC
Q 009708 405 VKCDKVLLDAPC 416 (528)
Q Consensus 405 ~~fD~Vl~D~Pc 416 (528)
+.+|.|+..+..
T Consensus 85 ~~~d~li~~ag~ 96 (258)
T PRK06949 85 GTIDILVNNSGV 96 (258)
T ss_pred CCCCEEEECCCC
Confidence 468999886554
|
|
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=87.87 E-value=3.1 Score=42.46 Aligned_cols=100 Identities=14% Similarity=0.055 Sum_probs=60.6
Q ss_pred HhcCCCCCCeEEEeCC--ccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcC-ccccccc-cCC
Q 009708 329 AVVDPQPGQSIVDCCA--APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA-DLRTFAD-NST 404 (528)
Q Consensus 329 ~~l~~~~g~~VLDl~a--G~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~-D~~~~~~-~~~ 404 (528)
....+++|++||=.|+ |.|..++++|+.+ +.+|++++.++++.+.++ .+|.+..+..... +...... ...
T Consensus 132 ~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~--G~~Vi~~~~s~~~~~~~~----~lGa~~vi~~~~~~~~~~~~~~~~~ 205 (325)
T TIGR02825 132 EICGVKGGETVMVNAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKVAYLK----KLGFDVAFNYKTVKSLEETLKKASP 205 (325)
T ss_pred HHhCCCCCCEEEEeCCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHH----HcCCCEEEeccccccHHHHHHHhCC
Confidence 3456788999988774 3555667777764 357999999988877664 4676532221111 1111111 112
Q ss_pred CCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEE
Q 009708 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463 (528)
Q Consensus 405 ~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvy 463 (528)
..+|+|+ | |.|.. .+..+++.|++||+++.
T Consensus 206 ~gvdvv~-d--~~G~~--------------------------~~~~~~~~l~~~G~iv~ 235 (325)
T TIGR02825 206 DGYDCYF-D--NVGGE--------------------------FSNTVIGQMKKFGRIAI 235 (325)
T ss_pred CCeEEEE-E--CCCHH--------------------------HHHHHHHHhCcCcEEEE
Confidence 4588876 4 43311 25677888999999884
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >PRK09242 tropinone reductase; Provisional | Back alignment and domain information |
|---|
Probab=87.78 E-value=11 Score=36.69 Aligned_cols=79 Identities=15% Similarity=0.053 Sum_probs=51.8
Q ss_pred CCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccc---------cCCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD---------NSTV 405 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~---------~~~~ 405 (528)
|.++|=.|++ |+.+..++..+. .+.+|+.++.+++.++.+...+....-...+.++.+|+.+... ...+
T Consensus 9 ~k~~lItGa~-~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 87 (257)
T PRK09242 9 GQTALITGAS-KGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHWD 87 (257)
T ss_pred CCEEEEeCCC-chHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 5678888774 566666665543 3458999999988887777766554212347788888876321 1124
Q ss_pred CCCEEEEcCC
Q 009708 406 KCDKVLLDAP 415 (528)
Q Consensus 406 ~fD~Vl~D~P 415 (528)
.+|.|+..+-
T Consensus 88 ~id~li~~ag 97 (257)
T PRK09242 88 GLHILVNNAG 97 (257)
T ss_pred CCCEEEECCC
Confidence 6899887553
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.55 E-value=8.9 Score=37.41 Aligned_cols=79 Identities=14% Similarity=0.088 Sum_probs=54.7
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
.|.+||=.|+ +|+.+..+++.+- .+.+|+.++.++..++.+...++..|. .+.++..|+.+.... ..
T Consensus 9 ~~k~vlItGa-~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~ 85 (255)
T PRK07523 9 TGRRALVTGS-SQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGL--SAHALAFDVTDHDAVRAAIDAFEAEI 85 (255)
T ss_pred CCCEEEEECC-cchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCc--eEEEEEccCCCHHHHHHHHHHHHHhc
Confidence 3668888875 6778888777553 345899999999888777777766553 367788888763211 12
Q ss_pred CCCCEEEEcCCC
Q 009708 405 VKCDKVLLDAPC 416 (528)
Q Consensus 405 ~~fD~Vl~D~Pc 416 (528)
...|.|+..+..
T Consensus 86 ~~~d~li~~ag~ 97 (255)
T PRK07523 86 GPIDILVNNAGM 97 (255)
T ss_pred CCCCEEEECCCC
Confidence 468999887654
|
|
| >PRK07062 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.54 E-value=13 Score=36.56 Aligned_cols=81 Identities=16% Similarity=0.057 Sum_probs=52.8
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
.|.++|=.|++ |+.+.+++..+. .+.+|+.++.++..++.+.+.+....-...+.++..|+.+.... ..
T Consensus 7 ~~k~~lItGas-~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 85 (265)
T PRK07062 7 EGRVAVVTGGS-SGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARF 85 (265)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHhc
Confidence 36678888865 566666666553 35689999999988877766655432222467788888764321 12
Q ss_pred CCCCEEEEcCCC
Q 009708 405 VKCDKVLLDAPC 416 (528)
Q Consensus 405 ~~fD~Vl~D~Pc 416 (528)
+..|.++.++-.
T Consensus 86 g~id~li~~Ag~ 97 (265)
T PRK07062 86 GGVDMLVNNAGQ 97 (265)
T ss_pred CCCCEEEECCCC
Confidence 468998886544
|
|
| >PRK07831 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.48 E-value=9.2 Score=37.52 Aligned_cols=81 Identities=17% Similarity=0.108 Sum_probs=51.7
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHH-cCCCccEEEEcCcccccccc---------C
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKL-HQVNSVIRTIHADLRTFADN---------S 403 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~-~g~~~~i~~~~~D~~~~~~~---------~ 403 (528)
.+.++|=.|++..+.+..+++.+. .+.+|+.+|.++..++...+.++. .+-. ++.++..|+.+.... .
T Consensus 16 ~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~ 94 (262)
T PRK07831 16 AGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELGLG-RVEAVVCDVTSEAQVDALIDAAVER 94 (262)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcCCc-eEEEEEccCCCHHHHHHHHHHHHHH
Confidence 356788887642255666555442 245799999998888777766654 3322 377888888763211 1
Q ss_pred CCCCCEEEEcCCC
Q 009708 404 TVKCDKVLLDAPC 416 (528)
Q Consensus 404 ~~~fD~Vl~D~Pc 416 (528)
.+..|.++.++-.
T Consensus 95 ~g~id~li~~ag~ 107 (262)
T PRK07831 95 LGRLDVLVNNAGL 107 (262)
T ss_pred cCCCCEEEECCCC
Confidence 2468999887654
|
|
| >KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=87.46 E-value=3.1 Score=41.21 Aligned_cols=102 Identities=21% Similarity=0.262 Sum_probs=60.6
Q ss_pred HHHhcCCCCCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC--
Q 009708 327 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS-- 403 (528)
Q Consensus 327 ~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~-- 403 (528)
+-+...++||+.||=- ++.||.++.+.+.+. -+.++++.--+.+..+.+++ +|+...|.....|...-....
T Consensus 138 l~e~y~vkpGhtVlvh-aAAGGVGlll~Ql~ra~~a~tI~~asTaeK~~~ake----nG~~h~I~y~~eD~v~~V~kiTn 212 (336)
T KOG1197|consen 138 LFEAYNVKPGHTVLVH-AAAGGVGLLLCQLLRAVGAHTIATASTAEKHEIAKE----NGAEHPIDYSTEDYVDEVKKITN 212 (336)
T ss_pred HHHhcCCCCCCEEEEE-eccccHHHHHHHHHHhcCcEEEEEeccHHHHHHHHh----cCCcceeeccchhHHHHHHhccC
Confidence 3455678999988744 334555554444432 13578888777777776655 577665666666665433222
Q ss_pred CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEE
Q 009708 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV 462 (528)
Q Consensus 404 ~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lv 462 (528)
+...|.++ |+ .|. +-+...+..||++|++|
T Consensus 213 gKGVd~vy-Ds----vG~------------------------dt~~~sl~~Lk~~G~mV 242 (336)
T KOG1197|consen 213 GKGVDAVY-DS----VGK------------------------DTFAKSLAALKPMGKMV 242 (336)
T ss_pred CCCceeee-cc----ccc------------------------hhhHHHHHHhccCceEE
Confidence 34577664 21 111 11555677788888887
|
|
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.39 E-value=9.8 Score=36.68 Aligned_cols=76 Identities=12% Similarity=-0.046 Sum_probs=51.2
Q ss_pred CCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 405 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~~ 405 (528)
+.++|=.|+ +|+.+..++..+- .+.+|++++.++.....+.+.++..+ ..+.++.+|+.+.... ..+
T Consensus 6 ~k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (241)
T PRK07454 6 MPRALITGA-SSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTG--VKAAAYSIDLSNPEAIAPGIAELLEQFG 82 (241)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCC--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 457777775 6788887777653 24589999999887776666555443 2477888998764321 013
Q ss_pred CCCEEEEcC
Q 009708 406 KCDKVLLDA 414 (528)
Q Consensus 406 ~fD~Vl~D~ 414 (528)
..|.|+..+
T Consensus 83 ~id~lv~~a 91 (241)
T PRK07454 83 CPDVLINNA 91 (241)
T ss_pred CCCEEEECC
Confidence 579888754
|
|
| >PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=87.27 E-value=7.5 Score=37.72 Aligned_cols=81 Identities=17% Similarity=0.060 Sum_probs=52.9
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcCC-CcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccc-----------c
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA-----------D 401 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~~-~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~-----------~ 401 (528)
.++.+||=.|+ +|+.+..+++.+-. +.+|++++.++..++.+...++..+.. .+.++..|+.... .
T Consensus 10 ~~~k~vlItG~-~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~ 87 (247)
T PRK08945 10 LKDRIILVTGA-GDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGGP-QPAIIPLDLLTATPQNYQQLADTIE 87 (247)
T ss_pred cCCCEEEEeCC-CchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCCC-CceEEEecccCCCHHHHHHHHHHHH
Confidence 35778888884 67778777765532 348999999998887777666665543 3556666664211 0
Q ss_pred cCCCCCCEEEEcCCC
Q 009708 402 NSTVKCDKVLLDAPC 416 (528)
Q Consensus 402 ~~~~~fD~Vl~D~Pc 416 (528)
...++.|.|+..+..
T Consensus 88 ~~~~~id~vi~~Ag~ 102 (247)
T PRK08945 88 EQFGRLDGVLHNAGL 102 (247)
T ss_pred HHhCCCCEEEECCcc
Confidence 112468999987643
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=87.25 E-value=1.2 Score=43.02 Aligned_cols=103 Identities=21% Similarity=0.195 Sum_probs=62.3
Q ss_pred hHHHHHHhcCCC----C----CCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcC
Q 009708 323 SAGLVVAVVDPQ----P----GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA 394 (528)
Q Consensus 323 ~s~l~~~~l~~~----~----g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~ 394 (528)
+|.+++.++... . .-++||+||=+....+... +.-.|++||+++.- + .+.+.
T Consensus 31 SSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~~----~~fdvt~IDLns~~-------------~---~I~qq 90 (219)
T PF11968_consen 31 SSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACSTS----GWFDVTRIDLNSQH-------------P---GILQQ 90 (219)
T ss_pred hhHHHHHHhhhhccccccccccceEEeecccCCCCccccc----CceeeEEeecCCCC-------------C---Cceee
Confidence 667777765421 1 1489999998655433222 23469999997521 2 24677
Q ss_pred ccccccc--cCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCE-----EEEE
Q 009708 395 DLRTFAD--NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGV-----LVYS 464 (528)
Q Consensus 395 D~~~~~~--~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~-----Lvys 464 (528)
|+.+.+- ...++||+|.+- =++.--| ++...- ++|..+.++|+|+|. |+..
T Consensus 91 DFm~rplp~~~~e~FdvIs~S------LVLNfVP------~p~~RG-------~Ml~r~~~fL~~~g~~~~~~LFlV 148 (219)
T PF11968_consen 91 DFMERPLPKNESEKFDVISLS------LVLNFVP------DPKQRG-------EMLRRAHKFLKPPGLSLFPSLFLV 148 (219)
T ss_pred ccccCCCCCCcccceeEEEEE------EEEeeCC------CHHHHH-------HHHHHHHHHhCCCCccCcceEEEE
Confidence 8877542 235789988642 1111112 122222 359999999999999 6654
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.20 E-value=1 Score=41.41 Aligned_cols=105 Identities=18% Similarity=0.233 Sum_probs=63.0
Q ss_pred CCeEEEeCCccchHH-HHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCc--cEEEEcCccccccc-cCCCCCCEEE
Q 009708 336 GQSIVDCCAAPGGKT-LYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS--VIRTIHADLRTFAD-NSTVKCDKVL 411 (528)
Q Consensus 336 g~~VLDl~aG~G~kt-~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~--~i~~~~~D~~~~~~-~~~~~fD~Vl 411 (528)
|..||++|.|--+.+ +.+|.. .+...|.-.|-++..++-.++....+.... .+.++..+.-.-.. .....||.|+
T Consensus 30 g~~ilelgggft~laglmia~~-a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl 108 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACK-APDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL 108 (201)
T ss_pred HHHHHHhcCchhhhhhhheeee-cCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence 678999998855444 444443 345789999999999988887666653322 11111111111000 1135899998
Q ss_pred EcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEE
Q 009708 412 LDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463 (528)
Q Consensus 412 ~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvy 463 (528)
+ +-|. -+.+....+.+....+|+|.|.-++
T Consensus 109 a-ADCl---------------------FfdE~h~sLvdtIk~lL~p~g~Al~ 138 (201)
T KOG3201|consen 109 A-ADCL---------------------FFDEHHESLVDTIKSLLRPSGRALL 138 (201)
T ss_pred e-ccch---------------------hHHHHHHHHHHHHHHHhCcccceeE
Confidence 6 4551 1222334568888999999987553
|
|
| >PRK07814 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.14 E-value=7.8 Score=38.13 Aligned_cols=78 Identities=17% Similarity=0.067 Sum_probs=53.2
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
.+.+||=.|+ +|+.+.++++.+- .+.+|+.++.++..++.+.+.++..+. .+.++..|..+.... ..
T Consensus 9 ~~~~vlItGa-sggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~ 85 (263)
T PRK07814 9 DDQVAVVTGA-GRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAGR--RAHVVAADLAHPEATAGLAGQAVEAF 85 (263)
T ss_pred CCCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 4668888885 6778887776542 345899999998887777666655442 377888888764321 01
Q ss_pred CCCCEEEEcCC
Q 009708 405 VKCDKVLLDAP 415 (528)
Q Consensus 405 ~~fD~Vl~D~P 415 (528)
+++|.|+..+-
T Consensus 86 ~~id~vi~~Ag 96 (263)
T PRK07814 86 GRLDIVVNNVG 96 (263)
T ss_pred CCCCEEEECCC
Confidence 46899887653
|
|
| >PRK07097 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.13 E-value=14 Score=36.40 Aligned_cols=80 Identities=13% Similarity=-0.003 Sum_probs=53.4
Q ss_pred CCCeEEEeCCccchHHHHHHHHc-CCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCL-SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~-~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
.+.++|=.|++. +.+..++..+ ..+.+|+.++.++..++.+...++..+. .+.++.+|+.+.... ..
T Consensus 9 ~~k~~lItGa~~-~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~ 85 (265)
T PRK07097 9 KGKIALITGASY-GIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGI--EAHGYVCDVTDEDGVQAMVSQIEKEV 85 (265)
T ss_pred CCCEEEEeCCCc-hHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCC--ceEEEEcCCCCHHHHHHHHHHHHHhC
Confidence 356788887764 5565555543 2356899999999888877777766553 367888898764211 12
Q ss_pred CCCCEEEEcCCCC
Q 009708 405 VKCDKVLLDAPCS 417 (528)
Q Consensus 405 ~~fD~Vl~D~Pcs 417 (528)
+.+|.++.++-..
T Consensus 86 ~~id~li~~ag~~ 98 (265)
T PRK07097 86 GVIDILVNNAGII 98 (265)
T ss_pred CCCCEEEECCCCC
Confidence 4689999876553
|
|
| >PRK05599 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=87.03 E-value=11 Score=36.80 Aligned_cols=75 Identities=9% Similarity=-0.011 Sum_probs=52.2
Q ss_pred eEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCCCCC
Q 009708 338 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STVKCD 408 (528)
Q Consensus 338 ~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~~~fD 408 (528)
.||=.|++ +|.+..++..+..+.+|+.++.++..++.+.+.++..|-. .+.++..|+.+.... ..+..|
T Consensus 2 ~vlItGas-~GIG~aia~~l~~g~~Vil~~r~~~~~~~~~~~l~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id 79 (246)
T PRK05599 2 SILILGGT-SDIAGEIATLLCHGEDVVLAARRPEAAQGLASDLRQRGAT-SVHVLSFDAQDLDTHRELVKQTQELAGEIS 79 (246)
T ss_pred eEEEEeCc-cHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhccCC-ceEEEEcccCCHHHHHHHHHHHHHhcCCCC
Confidence 35655664 5678888876665678999999999988887777665533 366788888764211 125789
Q ss_pred EEEEcC
Q 009708 409 KVLLDA 414 (528)
Q Consensus 409 ~Vl~D~ 414 (528)
.++.++
T Consensus 80 ~lv~na 85 (246)
T PRK05599 80 LAVVAF 85 (246)
T ss_pred EEEEec
Confidence 988764
|
|
| >cd08293 PTGR2 Prostaglandin reductase | Back alignment and domain information |
|---|
Probab=86.99 E-value=4 Score=41.82 Aligned_cols=100 Identities=16% Similarity=0.126 Sum_probs=58.6
Q ss_pred cCCCCC--CeEEEeCC--ccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccc-ccCCC
Q 009708 331 VDPQPG--QSIVDCCA--APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA-DNSTV 405 (528)
Q Consensus 331 l~~~~g--~~VLDl~a--G~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~-~~~~~ 405 (528)
...++| ++||=.|+ |.|..++++|+.++ ..+|++++.++++.+.+++. +|.+..+.....|..... .....
T Consensus 148 ~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G-~~~Vi~~~~s~~~~~~~~~~---lGa~~vi~~~~~~~~~~i~~~~~~ 223 (345)
T cd08293 148 GHITPGANQTMVVSGAAGACGSLAGQIGRLLG-CSRVVGICGSDEKCQLLKSE---LGFDAAINYKTDNVAERLRELCPE 223 (345)
T ss_pred ccCCCCCCCEEEEECCCcHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHh---cCCcEEEECCCCCHHHHHHHHCCC
Confidence 345555 88888775 45666677777642 22799999998887766542 576542221112222111 11124
Q ss_pred CCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEE
Q 009708 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463 (528)
Q Consensus 406 ~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvy 463 (528)
.+|.|+ | |.|.. .+..+++.|+++|+++.
T Consensus 224 gvd~vi-d--~~g~~--------------------------~~~~~~~~l~~~G~iv~ 252 (345)
T cd08293 224 GVDVYF-D--NVGGE--------------------------ISDTVISQMNENSHIIL 252 (345)
T ss_pred CceEEE-E--CCCcH--------------------------HHHHHHHHhccCCEEEE
Confidence 689887 4 33211 14567788999999884
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid |
| >cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity | Back alignment and domain information |
|---|
Probab=86.98 E-value=3.5 Score=41.76 Aligned_cols=101 Identities=17% Similarity=0.130 Sum_probs=61.1
Q ss_pred HhcCCCCCCeEEEeCC--ccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccc-ccCCC
Q 009708 329 AVVDPQPGQSIVDCCA--APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA-DNSTV 405 (528)
Q Consensus 329 ~~l~~~~g~~VLDl~a--G~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~-~~~~~ 405 (528)
....+++|++||=.|+ +.|..++++|+.+ +.+|++++.++++.+.+++ +|.+..+.....|..... .....
T Consensus 137 ~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~--G~~vi~~~~s~~~~~~l~~----~Ga~~vi~~~~~~~~~~v~~~~~~ 210 (329)
T cd08294 137 EICKPKAGETVVVNGAAGAVGSLVGQIAKIK--GCKVIGCAGSDDKVAWLKE----LGFDAVFNYKTVSLEEALKEAAPD 210 (329)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCCEEEeCCCccHHHHHHHHCCC
Confidence 3456788999887764 4455667777764 3579999999988777654 576532222112221111 11124
Q ss_pred CCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 406 ~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
.+|.|+ | |.|. ..+..+++.|+++|+++..
T Consensus 211 gvd~vl-d--~~g~--------------------------~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 211 GIDCYF-D--NVGG--------------------------EFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred CcEEEE-E--CCCH--------------------------HHHHHHHHhhccCCEEEEE
Confidence 589776 3 4331 1256778889999998743
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac |
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.96 E-value=12 Score=38.67 Aligned_cols=79 Identities=15% Similarity=0.035 Sum_probs=54.2
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
.+.+||=.|+ +|+.+..+++.+- .+.+|+.++.++..++.+.+.++..|.+ +.++.+|+.+.... ..
T Consensus 7 ~~k~vlITGa-s~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~--~~~v~~Dv~d~~~v~~~~~~~~~~~ 83 (334)
T PRK07109 7 GRQVVVITGA-SAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGE--ALAVVADVADAEAVQAAADRAEEEL 83 (334)
T ss_pred CCCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCc--EEEEEecCCCHHHHHHHHHHHHHHC
Confidence 3556777775 5667777766553 3458999999999988887777766643 67788888764321 12
Q ss_pred CCCCEEEEcCCC
Q 009708 405 VKCDKVLLDAPC 416 (528)
Q Consensus 405 ~~fD~Vl~D~Pc 416 (528)
+.+|.++.++-.
T Consensus 84 g~iD~lInnAg~ 95 (334)
T PRK07109 84 GPIDTWVNNAMV 95 (334)
T ss_pred CCCCEEEECCCc
Confidence 468999887654
|
|
| >PRK08085 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.91 E-value=14 Score=36.03 Aligned_cols=79 Identities=13% Similarity=0.125 Sum_probs=52.9
Q ss_pred CCeEEEeCCccchHHHHHHHHcCC-CcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 405 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~~-~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~~ 405 (528)
+.++|=.|+ +|+.+..++..+-. +.+|+.++.++..+..+...++..+. .+.++..|+.+.... ..+
T Consensus 9 ~k~~lItGa-s~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 85 (254)
T PRK08085 9 GKNILITGS-AQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGI--KAHAAPFNVTHKQEVEAAIEHIEKDIG 85 (254)
T ss_pred CCEEEEECC-CChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCC--eEEEEecCCCCHHHHHHHHHHHHHhcC
Confidence 567777775 46777777766543 45899999998888777666665543 366777887664211 124
Q ss_pred CCCEEEEcCCCC
Q 009708 406 KCDKVLLDAPCS 417 (528)
Q Consensus 406 ~fD~Vl~D~Pcs 417 (528)
.+|.|+.++-..
T Consensus 86 ~id~vi~~ag~~ 97 (254)
T PRK08085 86 PIDVLINNAGIQ 97 (254)
T ss_pred CCCEEEECCCcC
Confidence 689999876543
|
|
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.83 E-value=8.6 Score=39.71 Aligned_cols=83 Identities=12% Similarity=0.109 Sum_probs=55.9
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
.+.+||=.|+ +|+.+..+++.+. .+.+|+.++.++..++.+.+.++..|.+ +.++..|+.+.... ..
T Consensus 6 ~~k~vlITGA-s~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~--~~~~~~Dv~d~~~v~~~~~~~~~~~ 82 (330)
T PRK06139 6 HGAVVVITGA-SSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGAE--VLVVPTDVTDADQVKALATQAASFG 82 (330)
T ss_pred CCCEEEEcCC-CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCc--EEEEEeeCCCHHHHHHHHHHHHHhc
Confidence 3567776666 5667777766543 3468999999999998888888776653 66777888753210 12
Q ss_pred CCCCEEEEcCCCCCCc
Q 009708 405 VKCDKVLLDAPCSGLG 420 (528)
Q Consensus 405 ~~fD~Vl~D~Pcsg~G 420 (528)
+.+|.++.++-....+
T Consensus 83 g~iD~lVnnAG~~~~~ 98 (330)
T PRK06139 83 GRIDVWVNNVGVGAVG 98 (330)
T ss_pred CCCCEEEECCCcCCCC
Confidence 5689999876544333
|
|
| >PRK08415 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=86.79 E-value=9.4 Score=38.14 Aligned_cols=78 Identities=10% Similarity=-0.039 Sum_probs=48.2
Q ss_pred CCeEEEeCCcc-chHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009708 336 GQSIVDCCAAP-GGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 336 g~~VLDl~aG~-G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
|..||=.|+++ +|.+..+|..+- .+.+|+.++.+....+.+++..+..+.. .++..|+.+.... ..
T Consensus 5 ~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~---~~~~~Dv~d~~~v~~~~~~i~~~~ 81 (274)
T PRK08415 5 GKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELGSD---YVYELDVSKPEHFKSLAESLKKDL 81 (274)
T ss_pred CcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCc---eEEEecCCCHHHHHHHHHHHHHHc
Confidence 66888888874 677877776553 3458888888854333444443444422 3567788764321 12
Q ss_pred CCCCEEEEcCCC
Q 009708 405 VKCDKVLLDAPC 416 (528)
Q Consensus 405 ~~fD~Vl~D~Pc 416 (528)
+++|.++.++-.
T Consensus 82 g~iDilVnnAG~ 93 (274)
T PRK08415 82 GKIDFIVHSVAF 93 (274)
T ss_pred CCCCEEEECCcc
Confidence 578998887643
|
|
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.75 E-value=6.6 Score=38.02 Aligned_cols=78 Identities=15% Similarity=0.101 Sum_probs=50.8
Q ss_pred CCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 405 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~~ 405 (528)
+.+||=.| |+|+.+.+++..+- .+.+|+.++.++.....+...++..+ ..+.++..|+.+.... ..+
T Consensus 6 ~k~vlItG-asg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 82 (250)
T PRK07774 6 DKVAIVTG-AAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADG--GTAIAVQVDVSDPDSAKAMADATVSAFG 82 (250)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 55777666 56778888877553 34589999998877766655554332 2356778888764321 113
Q ss_pred CCCEEEEcCCC
Q 009708 406 KCDKVLLDAPC 416 (528)
Q Consensus 406 ~fD~Vl~D~Pc 416 (528)
.+|.|+..+..
T Consensus 83 ~id~vi~~ag~ 93 (250)
T PRK07774 83 GIDYLVNNAAI 93 (250)
T ss_pred CCCEEEECCCC
Confidence 68999987654
|
|
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=86.51 E-value=5.3 Score=40.90 Aligned_cols=103 Identities=24% Similarity=0.262 Sum_probs=58.1
Q ss_pred HhcCCCCCCeEEEeCCcc-chHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc-CCCC
Q 009708 329 AVVDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVK 406 (528)
Q Consensus 329 ~~l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~-~~~~ 406 (528)
..+.+++|++||=.|+|+ |..+.++|+.++ ..+|++++.++++.+.++ .+|.+..+.....+...+... ....
T Consensus 157 ~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~G-~~~vi~~~~~~~~~~~~~----~~ga~~~i~~~~~~~~~~~~~~~~~~ 231 (339)
T cd08239 157 RRVGVSGRDTVLVVGAGPVGLGALMLARALG-AEDVIGVDPSPERLELAK----ALGADFVINSGQDDVQEIRELTSGAG 231 (339)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHH----HhCCCEEEcCCcchHHHHHHHhCCCC
Confidence 345677899988887643 223345555543 234999999999887664 456543221111111111111 1236
Q ss_pred CCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 407 CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 407 fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
+|+|+- |+|.. ..+..+++.|+++|+++..
T Consensus 232 ~d~vid---~~g~~-------------------------~~~~~~~~~l~~~G~~v~~ 261 (339)
T cd08239 232 ADVAIE---CSGNT-------------------------AARRLALEAVRPWGRLVLV 261 (339)
T ss_pred CCEEEE---CCCCH-------------------------HHHHHHHHHhhcCCEEEEE
Confidence 998873 33311 1256678889999998743
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=86.47 E-value=4.6 Score=39.19 Aligned_cols=99 Identities=24% Similarity=0.268 Sum_probs=59.3
Q ss_pred CCCCCeEEEeCCcc-chHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccc-ccccCCCCCCEE
Q 009708 333 PQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT-FADNSTVKCDKV 410 (528)
Q Consensus 333 ~~~g~~VLDl~aG~-G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~-~~~~~~~~fD~V 410 (528)
..+|++||..|+|+ |..+.+++..+ +.+|++++.++.+.+.++. .|....+.....+... ........+|.|
T Consensus 132 ~~~~~~vli~g~~~~G~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~d~v 205 (271)
T cd05188 132 LKPGDTVLVLGAGGVGLLAAQLAKAA--GARVIVTDRSDEKLELAKE----LGADHVIDYKEEDLEEELRLTGGGGADVV 205 (271)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHH----hCCceeccCCcCCHHHHHHHhcCCCCCEE
Confidence 37789999999886 55666777664 3689999999888776643 3433211111111111 001113569998
Q ss_pred EEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 411 LLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 411 l~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
+. |.+. . ..+..+.+.++++|+++...
T Consensus 206 i~---~~~~---------------~----------~~~~~~~~~l~~~G~~v~~~ 232 (271)
T cd05188 206 ID---AVGG---------------P----------ETLAQALRLLRPGGRIVVVG 232 (271)
T ss_pred EE---CCCC---------------H----------HHHHHHHHhcccCCEEEEEc
Confidence 85 3221 0 13666778899999988543
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >KOG4174 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.44 E-value=7.2 Score=38.53 Aligned_cols=120 Identities=17% Similarity=0.167 Sum_probs=75.4
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHH------HHHHHH---HHHcCCCccEEEEcCccccccc--c
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRL------RILNET---AKLHQVNSVIRTIHADLRTFAD--N 402 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l------~~~~~n---~~~~g~~~~i~~~~~D~~~~~~--~ 402 (528)
...+||-+|=|-=.++..++...+ ..+.|+|..++..-. --++.| ++++|+. .+...|++.+.. .
T Consensus 56 ~~~~ill~gEgdFSfs~sl~~~~g~sa~ni~atSlDsk~~dl~~KY~~~~~nv~~Lk~lG~~---I~h~Vdv~sl~~~~~ 132 (282)
T KOG4174|consen 56 KKQKILLVGEGDFSFSLSLAPHFGRSAGNITATSLDSKEFDLKQKYPDAKENVEALKRLGGT---ILHGVDVTSLKFHAD 132 (282)
T ss_pred ccccEEEecccchhhHHHHHHHhCccccceeeeeccchhhhhhhcccchHHHHHHHHHcCCc---eEecccceeEEeccc
Confidence 345788888877777888887755 345565554443331 123334 4566654 234456555432 1
Q ss_pred -CCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCc-CCCEEEEE
Q 009708 403 -STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVK-PGGVLVYS 464 (528)
Q Consensus 403 -~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~Lk-pGG~Lvys 464 (528)
..+.||.||.+-|.+|.|.- ..-| ..-+....++-+.+|+.|..+|+ ..|.|+..
T Consensus 133 ~~~~~~d~IiFNFPH~G~g~~-~e~d------~~~i~~~qkL~rgFle~akemL~~edGeI~it 189 (282)
T KOG4174|consen 133 LRLQRYDNIIFNFPHSGKGIK-FEQD------RNIIPLHQKLFRGFLESAKEMLKDEDGEIHIT 189 (282)
T ss_pred ccccccceEEEcCCCCCCCcc-cccc------hHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 14679999999999999984 1111 12233455667789999999999 77877653
|
|
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=86.44 E-value=7.1 Score=44.60 Aligned_cols=124 Identities=17% Similarity=0.144 Sum_probs=70.8
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
.|.+||=.|+ +|+.+..++..+. .+.+|+.+|.++..++.+...+... ..+.++..|+.+.... ..
T Consensus 421 ~gk~vLVTGa-sggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~~~ 496 (681)
T PRK08324 421 AGKVALVTGA-AGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAALAF 496 (681)
T ss_pred CCCEEEEecC-CCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 5678887775 4667776666543 3458999999998877665544332 2477888887663211 12
Q ss_pred CCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcC---CCEEEEEc
Q 009708 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKP---GGVLVYST 465 (528)
Q Consensus 405 ~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~Lkp---GG~LvysT 465 (528)
+.+|.|+.++-.+..+.+...+...|. ..+.....-...+++.+...+++ ||.+|+.+
T Consensus 497 g~iDvvI~~AG~~~~~~~~~~~~~~~~---~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vs 557 (681)
T PRK08324 497 GGVDIVVSNAGIAISGPIEETSDEDWR---RSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIA 557 (681)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHH---HHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence 468999987654433333222222221 11111222233456667776665 67777554
|
|
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=86.38 E-value=0.48 Score=45.35 Aligned_cols=55 Identities=22% Similarity=0.300 Sum_probs=31.5
Q ss_pred CCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 407 CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 407 fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
.|+|+.|||+.. +.-.. ....+ .......+........+.++.++|||||.+++.
T Consensus 1 VdliitDPPY~~-~~~~~-~~~~~-~~~~~~~~y~~~~~~~~~~~~rvLk~~g~~~i~ 55 (231)
T PF01555_consen 1 VDLIITDPPYNI-GKDYN-NYFDY-GDNKNHEEYLEWMEEWLKECYRVLKPGGSIFIF 55 (231)
T ss_dssp EEEEEE---TSS-SCS------CS-CHCCHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCEEEECCCCCC-CCCcc-hhhhc-cCCCCHHHHHHHHHHHHHHHHhhcCCCeeEEEE
Confidence 489999999942 22100 00000 111245566667788899999999999987743
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.24 E-value=16 Score=35.58 Aligned_cols=79 Identities=13% Similarity=0.072 Sum_probs=53.4
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
.|.+||=.|+ +|+.+..++..+. .+.+|+.++.++..++.+...++..+. .+.++.+|+.+.... ..
T Consensus 10 ~~k~ilItGa-s~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~ 86 (256)
T PRK06124 10 AGQVALVTGS-ARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGG--AAEALAFDIADEEAVAAAFARIDAEH 86 (256)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCC--ceEEEEccCCCHHHHHHHHHHHHHhc
Confidence 3668888885 5666777666542 356899999998888777776666553 367888888763210 12
Q ss_pred CCCCEEEEcCCC
Q 009708 405 VKCDKVLLDAPC 416 (528)
Q Consensus 405 ~~fD~Vl~D~Pc 416 (528)
+++|.|+..+-.
T Consensus 87 ~~id~vi~~ag~ 98 (256)
T PRK06124 87 GRLDILVNNVGA 98 (256)
T ss_pred CCCCEEEECCCC
Confidence 468999886543
|
|
| >PLN02989 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=86.23 E-value=8.1 Score=39.30 Aligned_cols=79 Identities=15% Similarity=0.111 Sum_probs=48.4
Q ss_pred CCeEEEeCCccchHHHHHHHHcCC-CcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc--CCCCCCEEEE
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN--STVKCDKVLL 412 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~~-~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~--~~~~fD~Vl~ 412 (528)
|.+||=.| |+|..+.+++..+-. +.+|+++..++.............+....++++.+|+.+.... .-..+|.|+.
T Consensus 5 ~k~vlVtG-~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vih 83 (325)
T PLN02989 5 GKVVCVTG-ASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVFH 83 (325)
T ss_pred CCEEEEEC-CchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEEE
Confidence 56788777 568889888876643 3478777766654433322222223323478888998875321 1235798887
Q ss_pred cCC
Q 009708 413 DAP 415 (528)
Q Consensus 413 D~P 415 (528)
.+.
T Consensus 84 ~A~ 86 (325)
T PLN02989 84 TAS 86 (325)
T ss_pred eCC
Confidence 654
|
|
| >PTZ00357 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=86.15 E-value=2.1 Score=47.76 Aligned_cols=76 Identities=21% Similarity=0.152 Sum_probs=50.1
Q ss_pred eEEEeCCccchHH---HHHHHHcCCCcEEEEEcCChHHHHHHHHHH-HHcCC-------CccEEEEcCccccccccC---
Q 009708 338 SIVDCCAAPGGKT---LYMASCLSGQGLVYAIDINKGRLRILNETA-KLHQV-------NSVIRTIHADLRTFADNS--- 403 (528)
Q Consensus 338 ~VLDl~aG~G~kt---~~la~~~~~~~~v~avD~s~~~l~~~~~n~-~~~g~-------~~~i~~~~~D~~~~~~~~--- 403 (528)
.|+=+|||-|-.- +.+++..+-..+|+|||.++..+.....+. ..... .+.|+++..|++.+....
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 5899999999864 444454444568999999977544443332 22233 345899999999974321
Q ss_pred -------CCCCCEEEEc
Q 009708 404 -------TVKCDKVLLD 413 (528)
Q Consensus 404 -------~~~fD~Vl~D 413 (528)
-+++|+|+..
T Consensus 783 s~~~P~~~gKaDIVVSE 799 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVSE 799 (1072)
T ss_pred cccccccccccceehHh
Confidence 1368988853
|
|
| >cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=86.07 E-value=5.9 Score=41.30 Aligned_cols=102 Identities=25% Similarity=0.332 Sum_probs=59.2
Q ss_pred hcCCCCCCeEEEeCCcc-chHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccc-ccccCCCCC
Q 009708 330 VVDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT-FADNSTVKC 407 (528)
Q Consensus 330 ~l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~-~~~~~~~~f 407 (528)
...+++|++||=.|+|. |..++++|+.++ ...++++|.++.+.+.+++ .|.+..+.....+... +.......+
T Consensus 181 ~~~~~~g~~vlI~g~g~vG~~~~~la~~~G-~~~v~~~~~~~~k~~~~~~----~g~~~~i~~~~~~~~~~v~~~~~~~~ 255 (365)
T cd08278 181 VLKPRPGSSIAVFGAGAVGLAAVMAAKIAG-CTTIIAVDIVDSRLELAKE----LGATHVINPKEEDLVAAIREITGGGV 255 (365)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----cCCcEEecCCCcCHHHHHHHHhCCCC
Confidence 34567888888887643 445566666643 3479999999988876643 4554211111111111 111113468
Q ss_pred CEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 408 DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 408 D~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
|+|+- |+|.+. .+..+++.++++|+++..
T Consensus 256 d~vld---~~g~~~-------------------------~~~~~~~~l~~~G~~v~~ 284 (365)
T cd08278 256 DYALD---TTGVPA-------------------------VIEQAVDALAPRGTLALV 284 (365)
T ss_pred cEEEE---CCCCcH-------------------------HHHHHHHHhccCCEEEEe
Confidence 98874 443221 367778888999988843
|
Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu |
| >PRK05876 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.05 E-value=13 Score=37.13 Aligned_cols=80 Identities=20% Similarity=0.173 Sum_probs=53.5
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
.|.+||=.|++ |+.+.+++..+. .+.+|+.+|.++..++.+.+.++..+. .+.++..|+.+.... ..
T Consensus 5 ~~k~vlVTGas-~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~~ 81 (275)
T PRK05876 5 PGRGAVITGGA-SGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGF--DVHGVMCDVRHREEVTHLADEAFRLL 81 (275)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--eEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 36678877765 667777776553 345899999998888776666655443 367788888764311 12
Q ss_pred CCCCEEEEcCCCC
Q 009708 405 VKCDKVLLDAPCS 417 (528)
Q Consensus 405 ~~fD~Vl~D~Pcs 417 (528)
+..|.|+.++-..
T Consensus 82 g~id~li~nAg~~ 94 (275)
T PRK05876 82 GHVDVVFSNAGIV 94 (275)
T ss_pred CCCCEEEECCCcC
Confidence 4689999876543
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.01 E-value=3.8 Score=44.12 Aligned_cols=112 Identities=17% Similarity=0.219 Sum_probs=73.5
Q ss_pred CCC-eEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEc
Q 009708 335 PGQ-SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLD 413 (528)
Q Consensus 335 ~g~-~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D 413 (528)
+-. ++|-+|||.--.+.++-+ .+--.|+.+|+|+-.++.....-.+. -. -+.+...|...+... .++||+||.-
T Consensus 47 p~~~~~l~lGCGNS~l~e~ly~--~G~~dI~~iD~S~V~V~~m~~~~~~~-~~-~~~~~~~d~~~l~fe-dESFdiVIdk 121 (482)
T KOG2352|consen 47 PSDFKILQLGCGNSELSEHLYK--NGFEDITNIDSSSVVVAAMQVRNAKE-RP-EMQMVEMDMDQLVFE-DESFDIVIDK 121 (482)
T ss_pred hhhceeEeecCCCCHHHHHHHh--cCCCCceeccccHHHHHHHHhccccC-Cc-ceEEEEecchhccCC-CcceeEEEec
Confidence 444 899999999877777655 23447999999999998776543322 12 367788888776533 4789988741
Q ss_pred CCCCCCccccC---CchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcC
Q 009708 414 APCSGLGVLSK---RADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466 (528)
Q Consensus 414 ~Pcsg~G~~~~---~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTc 466 (528)
|++.. ..+..|+. ..+ ...+....+++++||+.+-.||
T Consensus 122 ------GtlDal~~de~a~~~~--~~v-------~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 122 ------GTLDALFEDEDALLNT--AHV-------SNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred ------CccccccCCchhhhhh--HHh-------hHHHhhHHHHhccCCEEEEEEe
Confidence 22221 11112211 111 2348889999999999998888
|
|
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.66 E-value=9.4 Score=37.97 Aligned_cols=72 Identities=17% Similarity=0.149 Sum_probs=47.4
Q ss_pred CCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccc----------cCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD----------NST 404 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~----------~~~ 404 (528)
+.+||=.|| +|+.+.++++.+. .+.+|++++.++..++.+.. .+ ++++..|+.+... ...
T Consensus 4 ~k~vlItGa-sggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~----~~----~~~~~~Dl~d~~~~~~~~~~~~~~~~ 74 (277)
T PRK05993 4 KRSILITGC-SSGIGAYCARALQSDGWRVFATCRKEEDVAALEA----EG----LEAFQLDYAEPESIAALVAQVLELSG 74 (277)
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----CC----ceEEEccCCCHHHHHHHHHHHHHHcC
Confidence 557787776 5788888877653 34589999999887765432 22 5567788876321 112
Q ss_pred CCCCEEEEcCCC
Q 009708 405 VKCDKVLLDAPC 416 (528)
Q Consensus 405 ~~fD~Vl~D~Pc 416 (528)
+..|.|+.++-.
T Consensus 75 g~id~li~~Ag~ 86 (277)
T PRK05993 75 GRLDALFNNGAY 86 (277)
T ss_pred CCccEEEECCCc
Confidence 468999887543
|
|
| >PRK12937 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.65 E-value=17 Score=34.96 Aligned_cols=122 Identities=17% Similarity=0.077 Sum_probs=67.7
Q ss_pred CCeEEEeCCccchHHHHHHHHcCC-CcEEEEEcC-ChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDI-NKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~~-~~~v~avD~-s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
+.+||=.|+ +|+.+..++..+.. +.+++.+.. ++...+.+.+.+...+. .+.++..|+.+.... ..
T Consensus 5 ~~~vlItG~-~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~ 81 (245)
T PRK12937 5 NKVAIVTGA-SRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAAGG--RAIAVQADVADAAAVTRLFDAAETAF 81 (245)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhcCC--eEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 556777776 47788888776543 346666554 34445555555554442 477888888764211 02
Q ss_pred CCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHH----HHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEEL----KILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 405 ~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l----~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
+..|.|+..+.....+.+... +.++.... ..-...+++.+...++++|.+++.++.
T Consensus 82 ~~id~vi~~ag~~~~~~~~~~-------~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~ 141 (245)
T PRK12937 82 GRIDVLVNNAGVMPLGTIADF-------DLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLSTS 141 (245)
T ss_pred CCCCEEEECCCCCCCCChhhC-------CHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEeec
Confidence 468999987543322222211 22222211 112234566666677778999988765
|
|
| >PRK06172 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.62 E-value=15 Score=35.75 Aligned_cols=77 Identities=12% Similarity=-0.029 Sum_probs=52.5
Q ss_pred CCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 405 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~~ 405 (528)
+.+||=.|+ +|+.+..++..+. .+.+|+.++.++..++.+.+.++..+. .+.++.+|+.+.... ..+
T Consensus 7 ~k~ilItGa-s~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~i~~~~~~~~~~~g 83 (253)
T PRK06172 7 GKVALVTGG-AAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGG--EALFVACDVTRDAEVKALVEQTIAAYG 83 (253)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCC--ceEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 567888886 5667777766553 345899999999888777777666543 377888888763210 124
Q ss_pred CCCEEEEcCC
Q 009708 406 KCDKVLLDAP 415 (528)
Q Consensus 406 ~fD~Vl~D~P 415 (528)
++|.|+.++-
T Consensus 84 ~id~li~~ag 93 (253)
T PRK06172 84 RLDYAFNNAG 93 (253)
T ss_pred CCCEEEECCC
Confidence 6899997653
|
|
| >KOG2912 consensus Predicted DNA methylase [Function unknown] | Back alignment and domain information |
|---|
Probab=85.33 E-value=0.79 Score=46.48 Aligned_cols=79 Identities=10% Similarity=0.149 Sum_probs=55.9
Q ss_pred EEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccc------ccCCCCCCEEEEc
Q 009708 340 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA------DNSTVKCDKVLLD 413 (528)
Q Consensus 340 LDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~------~~~~~~fD~Vl~D 413 (528)
+|+|.|.-..--.+...+. ....+|.|++...+..+..|...+++...+.+++....... ......||.++||
T Consensus 107 iDIgtgasci~~llg~rq~-n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMcN 185 (419)
T KOG2912|consen 107 IDIGTGASCIYPLLGARQN-NWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMCN 185 (419)
T ss_pred eeccCchhhhHHhhhchhc-cceeeeeeccccccchhhccccccccccceeeEEecchhhcchhhhccCccceeeEEecC
Confidence 7888776554444444433 36789999999999999999999999887777765332110 0112469999999
Q ss_pred CCCCCC
Q 009708 414 APCSGL 419 (528)
Q Consensus 414 ~Pcsg~ 419 (528)
||..-.
T Consensus 186 PPFfe~ 191 (419)
T KOG2912|consen 186 PPFFEN 191 (419)
T ss_pred Cchhhc
Confidence 998543
|
|
| >PRK08159 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=85.32 E-value=14 Score=36.76 Aligned_cols=123 Identities=14% Similarity=0.012 Sum_probs=66.6
Q ss_pred CCeEEEeCCc-cchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccc---------cCC
Q 009708 336 GQSIVDCCAA-PGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD---------NST 404 (528)
Q Consensus 336 g~~VLDl~aG-~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~---------~~~ 404 (528)
|.++|=.|++ ++|.+..+++.+- .+.+|+.+..+....+.+++..+..+ . ..++..|+.+... ...
T Consensus 10 ~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~~~~~~~l~~~~~--~-~~~~~~Dl~~~~~v~~~~~~~~~~~ 86 (272)
T PRK08159 10 GKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAELG--A-FVAGHCDVTDEASIDAVFETLEKKW 86 (272)
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHHHhcC--C-ceEEecCCCCHHHHHHHHHHHHHhc
Confidence 5678888887 4788888887663 34577777665433344444444443 2 3457788865321 112
Q ss_pred CCCCEEEEcCCCCCCcc-ccCCchhhccCCHHHHHHH----HHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 405 VKCDKVLLDAPCSGLGV-LSKRADLRWNRRLEDMEEL----KILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 405 ~~fD~Vl~D~Pcsg~G~-~~~~pd~~~~~~~~~~~~l----~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
+..|.++.++-....+. .....+ .+.++.... ..-...+++.+...++.+|.+|..+
T Consensus 87 g~iD~lv~nAG~~~~~~~~~~~~~----~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~is 148 (272)
T PRK08159 87 GKLDFVVHAIGFSDKDELTGRYVD----TSRDNFTMTMDISVYSFTAVAQRAEKLMTDGGSILTLT 148 (272)
T ss_pred CCCcEEEECCcccCccccccCccc----CCHHHHHHHHhHHHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 56899998764432110 001011 122222221 1122345666677777788877554
|
|
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=85.31 E-value=8.4 Score=42.85 Aligned_cols=82 Identities=15% Similarity=-0.025 Sum_probs=54.2
Q ss_pred CCCCCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCC-------CccEEEEcCcccccccc-
Q 009708 332 DPQPGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQV-------NSVIRTIHADLRTFADN- 402 (528)
Q Consensus 332 ~~~~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~-------~~~i~~~~~D~~~~~~~- 402 (528)
+.+.|.+||=.|+ +|+.+.++++.+- .+.+|++++.+...+..+...+...++ ..++.++.+|+.+....
T Consensus 76 ~~~~gKvVLVTGA-TGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~ 154 (576)
T PLN03209 76 DTKDEDLAFVAGA-TGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIG 154 (576)
T ss_pred ccCCCCEEEEECC-CCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHH
Confidence 4456777777666 5788888876653 345899999999888766655543221 12478889999864321
Q ss_pred -CCCCCCEEEEcC
Q 009708 403 -STVKCDKVLLDA 414 (528)
Q Consensus 403 -~~~~fD~Vl~D~ 414 (528)
.-+..|.|++.+
T Consensus 155 ~aLggiDiVVn~A 167 (576)
T PLN03209 155 PALGNASVVICCI 167 (576)
T ss_pred HHhcCCCEEEEcc
Confidence 124689988743
|
|
| >PRK06505 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=85.31 E-value=13 Score=36.89 Aligned_cols=78 Identities=13% Similarity=-0.069 Sum_probs=48.1
Q ss_pred CCCeEEEeCCcc-chHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------C
Q 009708 335 PGQSIVDCCAAP-GGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------S 403 (528)
Q Consensus 335 ~g~~VLDl~aG~-G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~ 403 (528)
.|..+|=.|++. +|.+..+|..+- .+.+|+.++.+....+.+++..+..|. ..++..|+.+.... .
T Consensus 6 ~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~g~---~~~~~~Dv~d~~~v~~~~~~~~~~ 82 (271)
T PRK06505 6 QGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESLGS---DFVLPCDVEDIASVDAVFEALEKK 82 (271)
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhcCC---ceEEeCCCCCHHHHHHHHHHHHHH
Confidence 367899999886 367777776553 345788888776544444444344442 23577888764211 1
Q ss_pred CCCCCEEEEcCC
Q 009708 404 TVKCDKVLLDAP 415 (528)
Q Consensus 404 ~~~fD~Vl~D~P 415 (528)
.+..|.++.++-
T Consensus 83 ~g~iD~lVnnAG 94 (271)
T PRK06505 83 WGKLDFVVHAIG 94 (271)
T ss_pred hCCCCEEEECCc
Confidence 257898887653
|
|
| >PRK10083 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=85.29 E-value=7.3 Score=39.80 Aligned_cols=52 Identities=15% Similarity=0.073 Sum_probs=33.7
Q ss_pred HhcCCCCCCeEEEeCCccchHHHH---HHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCC
Q 009708 329 AVVDPQPGQSIVDCCAAPGGKTLY---MASCLSGQGLVYAIDINKGRLRILNETAKLHQVN 386 (528)
Q Consensus 329 ~~l~~~~g~~VLDl~aG~G~kt~~---la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~ 386 (528)
....+++|++||=.|+ |+.+.. +|+.+.+...++++|.++.+.+.++ .+|.+
T Consensus 154 ~~~~~~~g~~vlI~g~--g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~----~~Ga~ 208 (339)
T PRK10083 154 GRTGPTEQDVALIYGA--GPVGLTIVQVLKGVYNVKAVIVADRIDERLALAK----ESGAD 208 (339)
T ss_pred HhcCCCCCCEEEEECC--CHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHH----HhCCc
Confidence 3456788999888885 445444 4442213346889999998887665 35664
|
|
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=85.22 E-value=3.8 Score=41.67 Aligned_cols=88 Identities=14% Similarity=0.041 Sum_probs=52.5
Q ss_pred CCCCeEEEeCCcc-chHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEE
Q 009708 334 QPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 412 (528)
Q Consensus 334 ~~g~~VLDl~aG~-G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~ 412 (528)
.++++||=+|||+ |..++++|+.+ +...|+++|.++.+++.+... .. +. .... ....||+|+-
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~-G~~~v~~~~~~~~rl~~a~~~----~~------i~--~~~~---~~~g~Dvvid 206 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAA-GGSPPAVWETNPRRRDGATGY----EV------LD--PEKD---PRRDYRAIYD 206 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHc-CCceEEEeCCCHHHHHhhhhc----cc------cC--hhhc---cCCCCCEEEE
Confidence 3577888777653 44555666654 334577889998887765431 11 11 1110 1245898773
Q ss_pred cCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 413 DAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 413 D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
|+|.. ..+..+++++++||++++.-
T Consensus 207 ---~~G~~-------------------------~~~~~~~~~l~~~G~iv~~G 231 (308)
T TIGR01202 207 ---ASGDP-------------------------SLIDTLVRRLAKGGEIVLAG 231 (308)
T ss_pred ---CCCCH-------------------------HHHHHHHHhhhcCcEEEEEe
Confidence 44411 13677889999999998543
|
|
| >cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase | Back alignment and domain information |
|---|
Probab=85.03 E-value=3.6 Score=43.80 Aligned_cols=49 Identities=22% Similarity=0.209 Sum_probs=34.9
Q ss_pred cCCCCCCeEEEeC-Cc-cchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHH
Q 009708 331 VDPQPGQSIVDCC-AA-PGGKTLYMASCLS-GQGLVYAIDINKGRLRILNET 379 (528)
Q Consensus 331 l~~~~g~~VLDl~-aG-~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n 379 (528)
..+++|++||=.| +| -|..++++|+.++ +..+|+++|.++.+++.+++.
T Consensus 171 ~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~ 222 (410)
T cd08238 171 MGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRL 222 (410)
T ss_pred cCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHh
Confidence 3567888888776 33 4555666776643 234799999999999988764
|
L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found |
| >PRK12744 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.03 E-value=13 Score=36.34 Aligned_cols=122 Identities=16% Similarity=0.035 Sum_probs=64.9
Q ss_pred CCeEEEeCCccchHHHHHHHHcCC-CcEEEEEcCC----hHHHHHHHHHHHHcCCCccEEEEcCcccccccc--------
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDIN----KGRLRILNETAKLHQVNSVIRTIHADLRTFADN-------- 402 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~~-~~~v~avD~s----~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~-------- 402 (528)
+.+||=.|+ +|+.+..+++.+.. +.+|+.++.+ ....+.+.+.++..+. .+.++..|+.+....
T Consensus 8 ~k~vlItGa-~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~D~~~~~~~~~~~~~~~ 84 (257)
T PRK12744 8 GKVVLIAGG-AKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGA--KAVAFQADLTTAAAVEKLFDDAK 84 (257)
T ss_pred CcEEEEECC-CchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhCC--cEEEEecCcCCHHHHHHHHHHHH
Confidence 557887774 66788888876643 3466666543 2334333333444342 377888998764221
Q ss_pred -CCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHH----HHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 403 -STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEEL----KILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 403 -~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l----~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
..+..|.++.++--...+.+ +..+.++..+. ..-...+++.+...++++|.+++...|
T Consensus 85 ~~~~~id~li~~ag~~~~~~~-------~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~~~ss 147 (257)
T PRK12744 85 AAFGRPDIAINTVGKVLKKPI-------VEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVTLVTS 147 (257)
T ss_pred HhhCCCCEEEECCcccCCCCc-------ccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEEEecc
Confidence 12468999876532211111 11222222221 112223567777777778877765444
|
|
| >KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=85.00 E-value=4.4 Score=42.51 Aligned_cols=131 Identities=16% Similarity=0.195 Sum_probs=81.5
Q ss_pred HHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHH-------HHHcCC-CccEEEEcCcccc
Q 009708 327 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNET-------AKLHQV-NSVIRTIHADLRT 398 (528)
Q Consensus 327 ~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n-------~~~~g~-~~~i~~~~~D~~~ 398 (528)
+++-+...+++...|+|+|-|+...+.|... +...=+|+++...--+.+..+ ++..|- .+.++.+++++..
T Consensus 184 i~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a-~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~ 262 (419)
T KOG3924|consen 184 IVDELKLGPADVFMDLGSGVGQLVCFVAAYA-GCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLD 262 (419)
T ss_pred HHHHhccCCCCcccCCCcccchhhHHHHHhh-ccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCC
Confidence 4555778899999999999999999888763 344567777765544444333 334454 3568888988876
Q ss_pred cccc--CCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCc-----h
Q 009708 399 FADN--STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDP-----E 471 (528)
Q Consensus 399 ~~~~--~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~-----~ 471 (528)
.... .....++|+++--- -+|+..++ +.+.++-+++|-+++ |+-++.+ +
T Consensus 263 ~~~v~eI~~eatvi~vNN~~-------Fdp~L~lr----------------~~eil~~ck~gtrIi-S~~~L~~r~rs~e 318 (419)
T KOG3924|consen 263 PKRVTEIQTEATVIFVNNVA-------FDPELKLR----------------SKEILQKCKDGTRII-SSKPLVPRPRSQE 318 (419)
T ss_pred HHHHHHHhhcceEEEEeccc-------CCHHHHHh----------------hHHHHhhCCCcceEe-ccccccccccchh
Confidence 4321 13457888876332 23433322 335566678776666 5556555 3
Q ss_pred hhHHHHHHHHh
Q 009708 472 ENEERVEAFLL 482 (528)
Q Consensus 472 Ene~~v~~~l~ 482 (528)
-+-..+..|+.
T Consensus 319 s~~~~~~df~~ 329 (419)
T KOG3924|consen 319 STSRRVSDFVA 329 (419)
T ss_pred HHHHHHHHHHh
Confidence 34445566655
|
|
| >PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases | Back alignment and domain information |
|---|
Probab=84.95 E-value=12 Score=33.54 Aligned_cols=84 Identities=19% Similarity=0.126 Sum_probs=54.4
Q ss_pred eEEEeCCccchHHHHHHHHcC--CCcEEEEEcCC--hHHHHHHHHHHHHcCCCccEEEEcCccccccc---------cCC
Q 009708 338 SIVDCCAAPGGKTLYMASCLS--GQGLVYAIDIN--KGRLRILNETAKLHQVNSVIRTIHADLRTFAD---------NST 404 (528)
Q Consensus 338 ~VLDl~aG~G~kt~~la~~~~--~~~~v~avD~s--~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~---------~~~ 404 (528)
+||=.|++ |+.+..++..+- +...|+.+..+ ...++.+...++..+ . .+.++..|+.+... ...
T Consensus 2 ~~lItGa~-~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~-~-~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (167)
T PF00106_consen 2 TVLITGAS-SGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPG-A-KITFIECDLSDPESIRALIEEVIKRF 78 (167)
T ss_dssp EEEEETTT-SHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTT-S-EEEEEESETTSHHHHHHHHHHHHHHH
T ss_pred EEEEECCC-CHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccc-c-cccccccccccccccccccccccccc
Confidence 34555555 566666665442 24578888888 777777777777666 3 48899999876421 113
Q ss_pred CCCCEEEEcCCCCCCccccC
Q 009708 405 VKCDKVLLDAPCSGLGVLSK 424 (528)
Q Consensus 405 ~~fD~Vl~D~Pcsg~G~~~~ 424 (528)
..+|.++.++.....+.+..
T Consensus 79 ~~ld~li~~ag~~~~~~~~~ 98 (167)
T PF00106_consen 79 GPLDILINNAGIFSDGSLDD 98 (167)
T ss_dssp SSESEEEEECSCTTSBSGGG
T ss_pred cccccccccccccccccccc
Confidence 57999998766655444433
|
As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A .... |
| >KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=84.88 E-value=2.5 Score=44.06 Aligned_cols=54 Identities=19% Similarity=0.117 Sum_probs=41.2
Q ss_pred hHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHH
Q 009708 323 SAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNE 378 (528)
Q Consensus 323 ~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~ 378 (528)
-+.++..+.+..+-+.|+|+|+|.|..+..++- +.+-.|+|||-|....+.+++
T Consensus 141 lselvSsi~~f~gi~~vvD~GaG~G~LSr~lSl--~y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 141 LSELVSSISDFTGIDQVVDVGAGQGHLSRFLSL--GYGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred HHHHHHHHHhhcCCCeeEEcCCCchHHHHHHhh--ccCceEEEeccchHHHHHHHH
Confidence 345566665656667899999999999998875 456799999999766665554
|
|
| >PRK08862 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.85 E-value=19 Score=34.76 Aligned_cols=76 Identities=9% Similarity=-0.056 Sum_probs=49.7
Q ss_pred CCeEEEeCCccchHHHHHHHHc-CCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCL-SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 405 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~-~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~~ 405 (528)
|..+|=.|++.| .+..++..+ ..+.+|+.++.++..++.+.+.++..+.+ +..+..|..+.... .-+
T Consensus 5 ~k~~lVtGas~G-IG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~~--~~~~~~D~~~~~~~~~~~~~~~~~~g 81 (227)
T PRK08862 5 SSIILITSAGSV-LGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTDN--VYSFQLKDFSQESIRHLFDAIEQQFN 81 (227)
T ss_pred CeEEEEECCccH-HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCC--eEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 567887777764 455555443 34568999999999988877777665533 45566676553210 113
Q ss_pred -CCCEEEEcC
Q 009708 406 -KCDKVLLDA 414 (528)
Q Consensus 406 -~fD~Vl~D~ 414 (528)
.+|.++.++
T Consensus 82 ~~iD~li~na 91 (227)
T PRK08862 82 RAPDVLVNNW 91 (227)
T ss_pred CCCCEEEECC
Confidence 789988875
|
|
| >cd08232 idonate-5-DH L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=84.78 E-value=7.2 Score=39.84 Aligned_cols=98 Identities=21% Similarity=0.299 Sum_probs=56.1
Q ss_pred CCCCCCeEEEeCCcc-chHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEE
Q 009708 332 DPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKV 410 (528)
Q Consensus 332 ~~~~g~~VLDl~aG~-G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~V 410 (528)
...+|++||-.++|. |..+.++|+.++ ..+|++++.++...+.++ ..|.+..+.....+...... ....+|+|
T Consensus 162 ~~~~~~~VLI~g~g~vG~~~~~lak~~G-~~~v~~~~~s~~~~~~~~----~~g~~~vi~~~~~~~~~~~~-~~~~vd~v 235 (339)
T cd08232 162 GDLAGKRVLVTGAGPIGALVVAAARRAG-AAEIVATDLADAPLAVAR----AMGADETVNLARDPLAAYAA-DKGDFDVV 235 (339)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHH----HcCCCEEEcCCchhhhhhhc-cCCCccEE
Confidence 334788898887664 556667777642 237899999988877543 34554211111111111111 12358988
Q ss_pred EEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEE
Q 009708 411 LLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463 (528)
Q Consensus 411 l~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvy 463 (528)
+- |.|.+ ..+..+++.|+++|+++-
T Consensus 236 ld---~~g~~-------------------------~~~~~~~~~L~~~G~~v~ 260 (339)
T cd08232 236 FE---ASGAP-------------------------AALASALRVVRPGGTVVQ 260 (339)
T ss_pred EE---CCCCH-------------------------HHHHHHHHHHhcCCEEEE
Confidence 74 33311 125667888899999874
|
L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai |
| >PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.69 E-value=13 Score=36.29 Aligned_cols=80 Identities=14% Similarity=0.027 Sum_probs=50.3
Q ss_pred CCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 405 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~~ 405 (528)
+.+||=.|+ +|+.+.+++..+. .+.+|+.+|.+...++.+...++...-...+.++..|+.+.... ..+
T Consensus 2 ~k~ilItG~-~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~ 80 (259)
T PRK12384 2 NQVAVVIGG-GQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFG 80 (259)
T ss_pred CCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 346787885 5677777776553 34589999999887766655444321112377888888763211 014
Q ss_pred CCCEEEEcCCC
Q 009708 406 KCDKVLLDAPC 416 (528)
Q Consensus 406 ~fD~Vl~D~Pc 416 (528)
..|.|+..+-.
T Consensus 81 ~id~vv~~ag~ 91 (259)
T PRK12384 81 RVDLLVYNAGI 91 (259)
T ss_pred CCCEEEECCCc
Confidence 68999887644
|
|
| >PRK06603 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=84.66 E-value=16 Score=36.03 Aligned_cols=125 Identities=14% Similarity=0.017 Sum_probs=63.3
Q ss_pred CCCeEEEeCCccc-hHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccc---------cC
Q 009708 335 PGQSIVDCCAAPG-GKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD---------NS 403 (528)
Q Consensus 335 ~g~~VLDl~aG~G-~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~---------~~ 403 (528)
.|..+|=.|++.| |.+..+++.+. .+.+|+.++.++...+.+++..+..|. ..++..|+.+... ..
T Consensus 7 ~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~~~~~~~~~l~~~~g~---~~~~~~Dv~~~~~v~~~~~~~~~~ 83 (260)
T PRK06603 7 QGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSEVLEKRVKPLAEEIGC---NFVSELDVTNPKSISNLFDDIKEK 83 (260)
T ss_pred CCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCchHHHHHHHHHHHhcCC---ceEEEccCCCHHHHHHHHHHHHHH
Confidence 3567888888775 66666665543 345788878774333334443333332 2345678876421 11
Q ss_pred CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHH----HHHHHHHHHHhccCcCCCEEEEEc
Q 009708 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELK----ILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 404 ~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~----~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
.+.+|.++.++-........ .+ .+..+.++..+.. .-...+++.+...++.+|.+|..+
T Consensus 84 ~g~iDilVnnag~~~~~~~~-~~--~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~m~~~G~Iv~is 146 (260)
T PRK06603 84 WGSFDFLLHGMAFADKNELK-GR--YVDTSLENFHNSLHISCYSLLELSRSAEALMHDGGSIVTLT 146 (260)
T ss_pred cCCccEEEEccccCCccccc-Cc--cccCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEe
Confidence 25689888765432110000 00 1112223332221 122234566666677788877543
|
|
| >PRK08063 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=84.64 E-value=16 Score=35.32 Aligned_cols=78 Identities=10% Similarity=-0.003 Sum_probs=48.5
Q ss_pred CCeEEEeCCccchHHHHHHHHcCCC-cEEEE-EcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLSGQ-GLVYA-IDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~~~-~~v~a-vD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
+.+||=.|+ +|+.+.+++..+... .+|+. .+.+....+.+.+.++..+. .+.++.+|+.+.... ..
T Consensus 4 ~~~vlItGa-~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (250)
T PRK08063 4 GKVALVTGS-SRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALGR--KALAVKANVGDVEKIKEMFAQIDEEF 80 (250)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCC--eEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 557776666 477788877766433 36665 45666666655555555442 367788888764311 01
Q ss_pred CCCCEEEEcCCC
Q 009708 405 VKCDKVLLDAPC 416 (528)
Q Consensus 405 ~~fD~Vl~D~Pc 416 (528)
+..|.|+.++..
T Consensus 81 ~~id~vi~~ag~ 92 (250)
T PRK08063 81 GRLDVFVNNAAS 92 (250)
T ss_pred CCCCEEEECCCC
Confidence 368999987654
|
|
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=84.51 E-value=6 Score=40.59 Aligned_cols=100 Identities=19% Similarity=0.178 Sum_probs=60.7
Q ss_pred hcCCCCCCeEEEeCC--ccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcC-ccccc-cccCCC
Q 009708 330 VVDPQPGQSIVDCCA--APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA-DLRTF-ADNSTV 405 (528)
Q Consensus 330 ~l~~~~g~~VLDl~a--G~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~-D~~~~-~~~~~~ 405 (528)
...+++|++||=.|+ |-|..++++|+.+ +.+|++++.++++.+.+++. +|.+..+..... |.... ......
T Consensus 146 ~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~--G~~Vi~~~~~~~~~~~~~~~---lGa~~vi~~~~~~~~~~~i~~~~~~ 220 (338)
T cd08295 146 VCKPKKGETVFVSAASGAVGQLVGQLAKLK--GCYVVGSAGSDEKVDLLKNK---LGFDDAFNYKEEPDLDAALKRYFPN 220 (338)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHh---cCCceeEEcCCcccHHHHHHHhCCC
Confidence 456788999998876 4455667777764 35799999888887766542 566532221111 22111 111124
Q ss_pred CCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEE
Q 009708 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463 (528)
Q Consensus 406 ~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvy 463 (528)
.+|.|+ | |.|. ..+..+++.|+++|+++.
T Consensus 221 gvd~v~-d--~~g~--------------------------~~~~~~~~~l~~~G~iv~ 249 (338)
T cd08295 221 GIDIYF-D--NVGG--------------------------KMLDAVLLNMNLHGRIAA 249 (338)
T ss_pred CcEEEE-E--CCCH--------------------------HHHHHHHHHhccCcEEEE
Confidence 688886 4 3331 126677888999999884
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >PLN02740 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=84.47 E-value=8.1 Score=40.55 Aligned_cols=102 Identities=20% Similarity=0.216 Sum_probs=58.3
Q ss_pred hcCCCCCCeEEEeCCcc-chHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcC--cccc-ccccCCC
Q 009708 330 VVDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA--DLRT-FADNSTV 405 (528)
Q Consensus 330 ~l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~--D~~~-~~~~~~~ 405 (528)
...+++|++||=.|+|+ |..++++|+.+ +..+|+++|.++.+++.++ .+|.+..+..... |... +......
T Consensus 193 ~~~~~~g~~VlV~G~G~vG~~a~q~ak~~-G~~~Vi~~~~~~~r~~~a~----~~Ga~~~i~~~~~~~~~~~~v~~~~~~ 267 (381)
T PLN02740 193 TANVQAGSSVAIFGLGAVGLAVAEGARAR-GASKIIGVDINPEKFEKGK----EMGITDFINPKDSDKPVHERIREMTGG 267 (381)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHC-CCCcEEEEcCChHHHHHHH----HcCCcEEEecccccchHHHHHHHHhCC
Confidence 35678899999888643 22334455543 2236999999999988774 3676532221110 1111 1111122
Q ss_pred CCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCC-CEEEEE
Q 009708 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPG-GVLVYS 464 (528)
Q Consensus 406 ~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpG-G~Lvys 464 (528)
.+|+|+- |+|.. ..+..++..+++| |+++..
T Consensus 268 g~dvvid---~~G~~-------------------------~~~~~a~~~~~~g~G~~v~~ 299 (381)
T PLN02740 268 GVDYSFE---CAGNV-------------------------EVLREAFLSTHDGWGLTVLL 299 (381)
T ss_pred CCCEEEE---CCCCh-------------------------HHHHHHHHhhhcCCCEEEEE
Confidence 6898763 44421 1367778888886 887653
|
|
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.44 E-value=16 Score=36.73 Aligned_cols=126 Identities=11% Similarity=0.020 Sum_probs=66.6
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCCh-HHHHHHHHHHHHcCCCccEEEEcCcccccccc---------C
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINK-GRLRILNETAKLHQVNSVIRTIHADLRTFADN---------S 403 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~-~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~ 403 (528)
.+.+||=.|+ +|+.+..++..+- .+.+|+.++.++ ..++.....++..+. .+.++.+|+.+.... .
T Consensus 45 ~~k~iLItGa-sggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~i~~~ 121 (290)
T PRK06701 45 KGKVALITGG-DSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGV--KCLLIPGDVSDEAFCKDAVEETVRE 121 (290)
T ss_pred CCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCC--eEEEEEccCCCHHHHHHHHHHHHHH
Confidence 3667888886 4566777666553 346788888775 334444444544443 367888888763211 0
Q ss_pred CCCCCEEEEcCCCCCC-ccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcC
Q 009708 404 TVKCDKVLLDAPCSGL-GVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466 (528)
Q Consensus 404 ~~~fD~Vl~D~Pcsg~-G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTc 466 (528)
...+|.|+.++-.+.. +.+...+.-.|. ..+..-..-...+++.+...++++|.+|+.+-
T Consensus 122 ~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~---~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS 182 (290)
T PRK06701 122 LGRLDILVNNAAFQYPQQSLEDITAEQLD---KTFKTNIYSYFHMTKAALPHLKQGSAIINTGS 182 (290)
T ss_pred cCCCCEEEECCcccCCCCCcccCCHHHHH---HHHhhhhHHHHHHHHHHHHHHhhCCeEEEEec
Confidence 1468999876543211 111111110111 11111122233456666666677788887553
|
|
| >cd05285 sorbitol_DH Sorbitol dehydrogenase | Back alignment and domain information |
|---|
Probab=84.40 E-value=8.4 Score=39.52 Aligned_cols=103 Identities=23% Similarity=0.341 Sum_probs=59.5
Q ss_pred HhcCCCCCCeEEEeCCcc-chHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcc----cccccc-
Q 009708 329 AVVDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL----RTFADN- 402 (528)
Q Consensus 329 ~~l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~----~~~~~~- 402 (528)
.....++|++||-.|+|. |..++++|+.++ ...|++++.+++..+.+++ .|.+..+.....+. ..+...
T Consensus 156 ~~~~~~~g~~vlI~g~g~vG~~a~~lak~~G-~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~~~~~~ 230 (343)
T cd05285 156 RRAGVRPGDTVLVFGAGPIGLLTAAVAKAFG-ATKVVVTDIDPSRLEFAKE----LGATHTVNVRTEDTPESAEKIAELL 230 (343)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHHH----cCCcEEeccccccchhHHHHHHHHh
Confidence 455678899988876654 455566666643 2238999988888776643 36543221111111 111111
Q ss_pred CCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 403 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 403 ~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
....+|+|+- |+|.. ..+..+++.++++|+++..
T Consensus 231 ~~~~~d~vld---~~g~~-------------------------~~~~~~~~~l~~~G~~v~~ 264 (343)
T cd05285 231 GGKGPDVVIE---CTGAE-------------------------SCIQTAIYATRPGGTVVLV 264 (343)
T ss_pred CCCCCCEEEE---CCCCH-------------------------HHHHHHHHHhhcCCEEEEE
Confidence 1245898874 43311 1366778889999998743
|
Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >PRK07677 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.32 E-value=17 Score=35.41 Aligned_cols=78 Identities=15% Similarity=0.118 Sum_probs=50.1
Q ss_pred CCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 405 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~~ 405 (528)
|.++|=.|++ |+.+..+++.+. .+.+|+.++.++..++.+...+...+ ..+.++..|+.+.... ..+
T Consensus 1 ~k~~lItG~s-~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 77 (252)
T PRK07677 1 EKVVIITGGS-SGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFP--GQVLTVQMDVRNPEDVQKMVEQIDEKFG 77 (252)
T ss_pred CCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 3467766664 556666665443 34589999999888877766665544 2477888888653211 024
Q ss_pred CCCEEEEcCCC
Q 009708 406 KCDKVLLDAPC 416 (528)
Q Consensus 406 ~fD~Vl~D~Pc 416 (528)
..|.|+.++..
T Consensus 78 ~id~lI~~ag~ 88 (252)
T PRK07677 78 RIDALINNAAG 88 (252)
T ss_pred CccEEEECCCC
Confidence 68999887543
|
|
| >PRK08589 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=84.23 E-value=19 Score=35.71 Aligned_cols=77 Identities=18% Similarity=0.116 Sum_probs=48.9
Q ss_pred CCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 405 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~~ 405 (528)
|.++|=.|++ |+.+..++..+- .+.+|+.++.+ ..++.+.+.++..+. .+.++..|+.+.... ..+
T Consensus 6 ~k~vlItGas-~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~g 81 (272)
T PRK08589 6 NKVAVITGAS-TGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSNGG--KAKAYHVDISDEQQVKDFASEIKEQFG 81 (272)
T ss_pred CCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhcCC--eEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence 5677766665 566776666543 35689999998 566555555554442 367788888764211 124
Q ss_pred CCCEEEEcCCC
Q 009708 406 KCDKVLLDAPC 416 (528)
Q Consensus 406 ~fD~Vl~D~Pc 416 (528)
..|.++.++-.
T Consensus 82 ~id~li~~Ag~ 92 (272)
T PRK08589 82 RVDVLFNNAGV 92 (272)
T ss_pred CcCEEEECCCC
Confidence 68999987654
|
|
| >COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=84.23 E-value=5.7 Score=41.00 Aligned_cols=110 Identities=19% Similarity=0.234 Sum_probs=69.5
Q ss_pred HHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcC-ccccccccC-
Q 009708 326 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA-DLRTFADNS- 403 (528)
Q Consensus 326 l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~-D~~~~~~~~- 403 (528)
.+...+++++|++|.=.|||-=|.+......+-+.++|+|+|+++.+++.++ .+|..+.+..... |+.+.....
T Consensus 176 av~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~----~fGAT~~vn~~~~~~vv~~i~~~T 251 (366)
T COG1062 176 AVVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAK----KFGATHFVNPKEVDDVVEAIVELT 251 (366)
T ss_pred HhhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHH----hcCCceeecchhhhhHHHHHHHhc
Confidence 3456678899999999998865555444444566889999999999998875 4576542222111 222221111
Q ss_pred CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 404 ~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
+...|.+|- |.| . .+.+++++..+.++|..+..--.
T Consensus 252 ~gG~d~~~e---~~G--~-----------------------~~~~~~al~~~~~~G~~v~iGv~ 287 (366)
T COG1062 252 DGGADYAFE---CVG--N-----------------------VEVMRQALEATHRGGTSVIIGVA 287 (366)
T ss_pred CCCCCEEEE---ccC--C-----------------------HHHHHHHHHHHhcCCeEEEEecC
Confidence 235777753 433 1 11378888888889998865443
|
|
| >PRK08643 acetoin reductase; Validated | Back alignment and domain information |
|---|
Probab=84.17 E-value=24 Score=34.29 Aligned_cols=77 Identities=14% Similarity=0.030 Sum_probs=51.1
Q ss_pred CCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 405 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~~ 405 (528)
+.++|=.| |+|+.+.++++.+- .+.+|+.++.++..++.+...+...+. .+.++.+|+.+.... ..+
T Consensus 2 ~k~~lItG-as~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 78 (256)
T PRK08643 2 SKVALVTG-AGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDGG--KAIAVKADVSDRDQVFAAVRQVVDTFG 78 (256)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--eEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 34566555 55667777776553 345899999998888877777665543 367788888764210 124
Q ss_pred CCCEEEEcCC
Q 009708 406 KCDKVLLDAP 415 (528)
Q Consensus 406 ~fD~Vl~D~P 415 (528)
+.|.|+.++.
T Consensus 79 ~id~vi~~ag 88 (256)
T PRK08643 79 DLNVVVNNAG 88 (256)
T ss_pred CCCEEEECCC
Confidence 6899988653
|
|
| >PRK06079 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=84.04 E-value=11 Score=36.91 Aligned_cols=76 Identities=14% Similarity=0.006 Sum_probs=47.3
Q ss_pred CCCeEEEeCCcc-chHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------C
Q 009708 335 PGQSIVDCCAAP-GGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------S 403 (528)
Q Consensus 335 ~g~~VLDl~aG~-G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~ 403 (528)
.|.++|-.|++. +|.+..+++.+- .+.+|+.++.+....+.+ +...-. .+.++..|+.+.... .
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~~----~~~~~~-~~~~~~~Dl~~~~~v~~~~~~~~~~ 80 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKSL----QKLVDE-EDLLVECDVASDESIERAFATIKER 80 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHHH----HhhccC-ceeEEeCCCCCHHHHHHHHHHHHHH
Confidence 367899999885 677877777663 355888888774322222 222112 367788898763211 1
Q ss_pred CCCCCEEEEcCC
Q 009708 404 TVKCDKVLLDAP 415 (528)
Q Consensus 404 ~~~fD~Vl~D~P 415 (528)
.+.+|.++.++-
T Consensus 81 ~g~iD~lv~nAg 92 (252)
T PRK06079 81 VGKIDGIVHAIA 92 (252)
T ss_pred hCCCCEEEEccc
Confidence 256899988764
|
|
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=83.95 E-value=17 Score=34.79 Aligned_cols=78 Identities=18% Similarity=0.068 Sum_probs=51.5
Q ss_pred CCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 405 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~~ 405 (528)
+.+||=.|+ +|+.+..+++.+. .+.+|+.++.++...+.....++..+. .+.++.+|+.+.... .-.
T Consensus 5 ~~~ilItGa-sg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (246)
T PRK05653 5 GKTALVTGA-SRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGG--EARVLVFDVSDEAAVRALIEAAVEAFG 81 (246)
T ss_pred CCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcCC--ceEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 457887775 7888888876653 234799999998887766665555443 367778888753210 013
Q ss_pred CCCEEEEcCCC
Q 009708 406 KCDKVLLDAPC 416 (528)
Q Consensus 406 ~fD~Vl~D~Pc 416 (528)
..|.|+..+-.
T Consensus 82 ~id~vi~~ag~ 92 (246)
T PRK05653 82 ALDILVNNAGI 92 (246)
T ss_pred CCCEEEECCCc
Confidence 57988876543
|
|
| >PRK07889 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=83.66 E-value=9.4 Score=37.55 Aligned_cols=122 Identities=14% Similarity=0.069 Sum_probs=65.6
Q ss_pred CCCeEEEeCCc-cchHHHHHHHHcC-CCcEEEEEcCCh--HHHHHHHHHHHHcCCCccEEEEcCccccccc---------
Q 009708 335 PGQSIVDCCAA-PGGKTLYMASCLS-GQGLVYAIDINK--GRLRILNETAKLHQVNSVIRTIHADLRTFAD--------- 401 (528)
Q Consensus 335 ~g~~VLDl~aG-~G~kt~~la~~~~-~~~~v~avD~s~--~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~--------- 401 (528)
.+.++|=.|+| ++|.+..+++.+. .+.+|+.++.+. +.++.+.+ ..+- .+.++..|+.+...
T Consensus 6 ~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~---~~~~--~~~~~~~Dv~~~~~i~~~~~~~~ 80 (256)
T PRK07889 6 EGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAK---RLPE--PAPVLELDVTNEEHLASLADRVR 80 (256)
T ss_pred cCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHH---hcCC--CCcEEeCCCCCHHHHHHHHHHHH
Confidence 36789999986 6888888887654 345888888663 33333322 2222 25567788876421
Q ss_pred cCCCCCCEEEEcCCCCCCccc-cCCchhhccCCHHHHHH----HHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 402 NSTVKCDKVLLDAPCSGLGVL-SKRADLRWNRRLEDMEE----LKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 402 ~~~~~fD~Vl~D~Pcsg~G~~-~~~pd~~~~~~~~~~~~----l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
...+.+|.++.++-......+ ....+ .+.++..+ ...-...+.+.+...++++|.+|..+
T Consensus 81 ~~~g~iD~li~nAG~~~~~~~~~~~~~----~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~g~Iv~is 145 (256)
T PRK07889 81 EHVDGLDGVVHSIGFAPQSALGGNFLD----APWEDVATALHVSAYSLKSLAKALLPLMNEGGSIVGLD 145 (256)
T ss_pred HHcCCCcEEEEccccccccccCCCccc----CCHHHHHHHHHHHhHHHHHHHHHHHHhcccCceEEEEe
Confidence 112579998886533211000 00011 11222221 11122235566677777888887644
|
|
| >PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function | Back alignment and domain information |
|---|
Probab=83.54 E-value=2.3 Score=38.42 Aligned_cols=53 Identities=21% Similarity=0.228 Sum_probs=33.2
Q ss_pred EeCCccc--hHHHHHH-HHcCCCcEEEEEcCChHHHHHHHHH--HHHcCCCccEEEEc
Q 009708 341 DCCAAPG--GKTLYMA-SCLSGQGLVYAIDINKGRLRILNET--AKLHQVNSVIRTIH 393 (528)
Q Consensus 341 Dl~aG~G--~kt~~la-~~~~~~~~v~avD~s~~~l~~~~~n--~~~~g~~~~i~~~~ 393 (528)
|+||..| ..+..++ +.....++|+++|.+|..++.++.| +..+...+.+++..
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~~~~~~~~~ 58 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDKDGEVEFHP 58 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTTSTTGGEEE
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCCCceEEEEE
Confidence 8999999 6666554 2445678999999999999999999 66554332244443
|
; PDB: 2PY6_A. |
| >PRK06500 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.51 E-value=20 Score=34.46 Aligned_cols=75 Identities=17% Similarity=0.108 Sum_probs=46.1
Q ss_pred CCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccc---------cCCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD---------NSTV 405 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~---------~~~~ 405 (528)
+.+||=.|+ +|+.+.++++.+. .+.+|+.++.++..++.+.+. .+. .+.++..|..+... ...+
T Consensus 6 ~k~vlItGa-sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~---~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (249)
T PRK06500 6 GKTALITGG-TSGIGLETARQFLAEGARVAITGRDPASLEAARAE---LGE--SALVIRADAGDVAAQKALAQALAEAFG 79 (249)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHH---hCC--ceEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 556666665 4677777776553 345899999987766544332 232 36677778765321 1124
Q ss_pred CCCEEEEcCCC
Q 009708 406 KCDKVLLDAPC 416 (528)
Q Consensus 406 ~fD~Vl~D~Pc 416 (528)
.+|.|+.++..
T Consensus 80 ~id~vi~~ag~ 90 (249)
T PRK06500 80 RLDAVFINAGV 90 (249)
T ss_pred CCCEEEECCCC
Confidence 68999987654
|
|
| >PRK12746 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.46 E-value=16 Score=35.39 Aligned_cols=125 Identities=18% Similarity=0.126 Sum_probs=64.3
Q ss_pred CCeEEEeCCccchHHHHHHHHcCCCc-EEEEE-cCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC----------
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLSGQG-LVYAI-DINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS---------- 403 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~~~~-~v~av-D~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~---------- 403 (528)
+.+||=.|+ +|+.+.++++.+-..| .|+.+ ..+...++.....+...+ ..+.++..|+.+.....
T Consensus 6 ~~~ilItGa-sg~iG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~d~~~i~~~~~~~~~~~ 82 (254)
T PRK12746 6 GKVALVTGA-SRGIGRAIAMRLANDGALVAIHYGRNKQAADETIREIESNG--GKAFLIEADLNSIDGVKKLVEQLKNEL 82 (254)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC--CcEEEEEcCcCCHHHHHHHHHHHHHHh
Confidence 457886774 6888988887664334 55443 455555444433333322 23778888987643210
Q ss_pred -----CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcC
Q 009708 404 -----TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466 (528)
Q Consensus 404 -----~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTc 466 (528)
....|.|+..+-....+.+...+...|. ..+.........+++.+...++..|.+|+.+.
T Consensus 83 ~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~---~~~~~n~~~~~~l~~~~~~~~~~~~~~v~~sS 147 (254)
T PRK12746 83 QIRVGTSEIDILVNNAGIGTQGTIENTTEEIFD---EIMAVNIKAPFFLIQQTLPLLRAEGRVINISS 147 (254)
T ss_pred ccccCCCCccEEEECCCCCCCCChhhCCHHHHH---HHHHHHhHHHHHHHHHHHHHhhcCCEEEEECC
Confidence 1358999876533222222111111111 11112222333456666666666777776543
|
|
| >cd05278 FDH_like Formaldehyde dehydrogenases | Back alignment and domain information |
|---|
Probab=83.20 E-value=6.4 Score=40.28 Aligned_cols=100 Identities=24% Similarity=0.354 Sum_probs=57.3
Q ss_pred cCCCCCCeEEEeCCcc-chHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccc-cc-cCCCCC
Q 009708 331 VDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF-AD-NSTVKC 407 (528)
Q Consensus 331 l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~-~~-~~~~~f 407 (528)
...++|++||-.|+|. |..++++|+.++ ...|++++.++.+.+.+++ .|.+..+.....+.... .. .....+
T Consensus 163 ~~~~~~~~VlI~g~g~vg~~~iqlak~~g-~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~i~~~~~~~~~ 237 (347)
T cd05278 163 AGIKPGSTVAVIGAGPVGLCAVAGARLLG-AARIIAVDSNPERLDLAKE----AGATDIINPKNGDIVEQILELTGGRGV 237 (347)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEeCCHHHHHHHHH----hCCcEEEcCCcchHHHHHHHHcCCCCC
Confidence 3466788998876642 555667777643 2478899888877766553 45432122112222111 11 112468
Q ss_pred CEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEE
Q 009708 408 DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463 (528)
Q Consensus 408 D~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvy 463 (528)
|+|+- |.+.+ ..+..+++.|+++|+++.
T Consensus 238 d~vld---~~g~~-------------------------~~~~~~~~~l~~~G~~v~ 265 (347)
T cd05278 238 DCVIE---AVGFE-------------------------ETFEQAVKVVRPGGTIAN 265 (347)
T ss_pred cEEEE---ccCCH-------------------------HHHHHHHHHhhcCCEEEE
Confidence 98873 32211 136777888999998873
|
Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall |
| >TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=83.14 E-value=27 Score=33.66 Aligned_cols=77 Identities=16% Similarity=0.061 Sum_probs=51.0
Q ss_pred eEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccc---------cCCCCC
Q 009708 338 SIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD---------NSTVKC 407 (528)
Q Consensus 338 ~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~---------~~~~~f 407 (528)
+||=.| |+|+.+..++..+- .+.+|++++.++...+.+...+...+. .+.++.+|+.+... ......
T Consensus 3 ~vlItG-a~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 79 (255)
T TIGR01963 3 TALVTG-AASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAGG--SVIYLVADVTKEDEIADMIAAAAAEFGGL 79 (255)
T ss_pred EEEEcC-CcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--ceEEEECCCCCHHHHHHHHHHHHHhcCCC
Confidence 455555 55778887776553 345899999998888777666555442 37788888876431 112458
Q ss_pred CEEEEcCCCC
Q 009708 408 DKVLLDAPCS 417 (528)
Q Consensus 408 D~Vl~D~Pcs 417 (528)
|.|+..+-..
T Consensus 80 d~vi~~a~~~ 89 (255)
T TIGR01963 80 DILVNNAGIQ 89 (255)
T ss_pred CEEEECCCCC
Confidence 9999876443
|
This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. |
| >PRK07067 sorbitol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.93 E-value=17 Score=35.42 Aligned_cols=75 Identities=16% Similarity=0.064 Sum_probs=48.1
Q ss_pred CCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 405 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~~ 405 (528)
+.+||=.| |+|+.+.++++.+- .+.+|+.+|.+...++.+.... + ..+.++..|+.+.... ..+
T Consensus 6 ~~~vlItG-as~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~---~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (257)
T PRK07067 6 GKVALLTG-AASGIGEAVAERYLAEGARVVIADIKPARARLAALEI---G--PAAIAVSLDVTRQDSIDRIVAAAVERFG 79 (257)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHh---C--CceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 45677666 55777888877653 3458999999988776554432 2 2367788888653221 124
Q ss_pred CCCEEEEcCCC
Q 009708 406 KCDKVLLDAPC 416 (528)
Q Consensus 406 ~fD~Vl~D~Pc 416 (528)
..|.++..+..
T Consensus 80 ~id~li~~ag~ 90 (257)
T PRK07067 80 GIDILFNNAAL 90 (257)
T ss_pred CCCEEEECCCc
Confidence 68988876544
|
|
| >PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted | Back alignment and domain information |
|---|
Probab=82.82 E-value=3.9 Score=40.47 Aligned_cols=71 Identities=17% Similarity=0.181 Sum_probs=39.1
Q ss_pred eCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC---CCCCCEEEEcCCC
Q 009708 342 CCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS---TVKCDKVLLDAPC 416 (528)
Q Consensus 342 l~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~---~~~fD~Vl~D~Pc 416 (528)
+...||+=.+.. ..+..+-+++.+|+.+.-.+.+++|+... .++.+.+.|........ ..+=-+|++|||+
T Consensus 62 l~~YPGSP~ia~-~llR~qDrl~l~ELHp~d~~~L~~~~~~~---~~v~v~~~DG~~~l~allPP~~rRglVLIDPpY 135 (245)
T PF04378_consen 62 LRFYPGSPAIAA-RLLREQDRLVLFELHPQDFEALKKNFRRD---RRVRVHHRDGYEGLKALLPPPERRGLVLIDPPY 135 (245)
T ss_dssp --EEE-HHHHHH-HHS-TTSEEEEE--SHHHHHHHTTS--TT---S-EEEE-S-HHHHHHHH-S-TTS-EEEEE----
T ss_pred cCcCCCCHHHHH-HhCCccceEEEEecCchHHHHHHHHhccC---CccEEEeCchhhhhhhhCCCCCCCeEEEECCCC
Confidence 556777654433 34466789999999999999999988752 35899999997743211 2344689999999
|
; PDB: 2OO3_A. |
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=82.66 E-value=3.6 Score=35.07 Aligned_cols=64 Identities=23% Similarity=0.168 Sum_probs=44.3
Q ss_pred CccchHHHHHHHHcCCCc-EEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---CCCCCCEEEEcCC
Q 009708 344 AAPGGKTLYMASCLSGQG-LVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---STVKCDKVLLDAP 415 (528)
Q Consensus 344 aG~G~kt~~la~~~~~~~-~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---~~~~fD~Vl~D~P 415 (528)
||.|..+..+++.+...+ .|+.+|.+++.++.+++ .| +.++.+|..+.... .-...|.|++..+
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~----~~----~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~ 71 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE----EG----VEVIYGDATDPEVLERAGIEKADAVVILTD 71 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH----TT----SEEEES-TTSHHHHHHTTGGCESEEEEESS
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh----cc----cccccccchhhhHHhhcCccccCEEEEccC
Confidence 567778888888776666 89999999999877654 23 45788998875321 1356888887433
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=82.64 E-value=8.4 Score=39.83 Aligned_cols=102 Identities=23% Similarity=0.233 Sum_probs=63.7
Q ss_pred cCCCCCCeEEEeCCc--cchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC--CCC
Q 009708 331 VDPQPGQSIVDCCAA--PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS--TVK 406 (528)
Q Consensus 331 l~~~~g~~VLDl~aG--~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~--~~~ 406 (528)
...++|++||=.|++ -|..++++|+.++ ..++++--+++..+ .++.+|.+..+.....|+.+-.... ...
T Consensus 138 ~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G--~~~v~~~~s~~k~~----~~~~lGAd~vi~y~~~~~~~~v~~~t~g~g 211 (326)
T COG0604 138 AGLKPGETVLVHGAAGGVGSAAIQLAKALG--ATVVAVVSSSEKLE----LLKELGADHVINYREEDFVEQVRELTGGKG 211 (326)
T ss_pred cCCCCCCEEEEecCCchHHHHHHHHHHHcC--CcEEEEecCHHHHH----HHHhcCCCEEEcCCcccHHHHHHHHcCCCC
Confidence 456789999988854 4557778888753 26666666665554 3556787754544444544332211 246
Q ss_pred CCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 407 CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 407 fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
+|.|+- +-- ...+......|+++|+++.....
T Consensus 212 vDvv~D-~vG----------------------------~~~~~~~l~~l~~~G~lv~ig~~ 243 (326)
T COG0604 212 VDVVLD-TVG----------------------------GDTFAASLAALAPGGRLVSIGAL 243 (326)
T ss_pred ceEEEE-CCC----------------------------HHHHHHHHHHhccCCEEEEEecC
Confidence 998873 221 12366678889999999976554
|
|
| >PRK07102 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.59 E-value=22 Score=34.29 Aligned_cols=77 Identities=17% Similarity=0.100 Sum_probs=50.8
Q ss_pred eEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc------CCCCCCEE
Q 009708 338 SIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN------STVKCDKV 410 (528)
Q Consensus 338 ~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~------~~~~fD~V 410 (528)
+||=.| |+|+.+..++..+- .+.+|++++.++...+...+.+...+-. ++.++.+|..+.... ....+|.|
T Consensus 3 ~vlItG-as~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~d~v 80 (243)
T PRK07102 3 KILIIG-ATSDIARACARRYAAAGARLYLAARDVERLERLADDLRARGAV-AVSTHELDILDTASHAAFLDSLPALPDIV 80 (243)
T ss_pred EEEEEc-CCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcCC-eEEEEecCCCChHHHHHHHHHHhhcCCEE
Confidence 567666 45778877777653 3458999999998877665555443323 478889998764321 12357999
Q ss_pred EEcCCC
Q 009708 411 LLDAPC 416 (528)
Q Consensus 411 l~D~Pc 416 (528)
+.++..
T Consensus 81 v~~ag~ 86 (243)
T PRK07102 81 LIAVGT 86 (243)
T ss_pred EECCcC
Confidence 987643
|
|
| >PRK06125 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.46 E-value=25 Score=34.26 Aligned_cols=77 Identities=13% Similarity=0.076 Sum_probs=50.2
Q ss_pred CCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc-----CCCCCCE
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-----STVKCDK 409 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~-----~~~~fD~ 409 (528)
+.+||=.|+ +|+.+..++..+. .+.+|++++.++..++.+...+....-. .+.++..|+.+.... ..+..|.
T Consensus 7 ~k~vlItG~-~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~D~~~~~~~~~~~~~~g~id~ 84 (259)
T PRK06125 7 GKRVLITGA-SKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAHGV-DVAVHALDLSSPEAREQLAAEAGDIDI 84 (259)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhcCC-ceEEEEecCCCHHHHHHHHHHhCCCCE
Confidence 567777775 5567776665443 2458999999998887776666543222 367788888653211 1256898
Q ss_pred EEEcC
Q 009708 410 VLLDA 414 (528)
Q Consensus 410 Vl~D~ 414 (528)
++.++
T Consensus 85 lv~~a 89 (259)
T PRK06125 85 LVNNA 89 (259)
T ss_pred EEECC
Confidence 88765
|
|
| >PRK08251 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.28 E-value=34 Score=32.95 Aligned_cols=81 Identities=16% Similarity=0.058 Sum_probs=53.7
Q ss_pred CCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 405 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~~ 405 (528)
+.+||=.| |+|+.+..+++.+. .+.+|+.++.++..++.+...+....-...+.++..|+.+.... ..+
T Consensus 2 ~k~vlItG-as~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (248)
T PRK08251 2 RQKILITG-ASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELG 80 (248)
T ss_pred CCEEEEEC-CCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 34677677 46788887777653 23589999999988887766655432223478888898764311 124
Q ss_pred CCCEEEEcCCCC
Q 009708 406 KCDKVLLDAPCS 417 (528)
Q Consensus 406 ~fD~Vl~D~Pcs 417 (528)
..|.|+.++-..
T Consensus 81 ~id~vi~~ag~~ 92 (248)
T PRK08251 81 GLDRVIVNAGIG 92 (248)
T ss_pred CCCEEEECCCcC
Confidence 689999876443
|
|
| >PRK09186 flagellin modification protein A; Provisional | Back alignment and domain information |
|---|
Probab=82.24 E-value=20 Score=34.68 Aligned_cols=78 Identities=22% Similarity=0.174 Sum_probs=50.6
Q ss_pred CCeEEEeCCccchHHHHHHHHcCC-CcEEEEEcCChHHHHHHHHHHHHc-CCCccEEEEcCcccccccc---------CC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLH-QVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~~-~~~v~avD~s~~~l~~~~~n~~~~-g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
+.+||=.|++ |+.+.+++..+.. +.+|+.++.++..++.+...+... +-. .+.++.+|+.+.... ..
T Consensus 4 ~k~vlItGas-~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~-~~~~~~~Dl~d~~~~~~~~~~~~~~~ 81 (256)
T PRK09186 4 GKTILITGAG-GLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSK-KLSLVELDITDQESLEEFLSKSAEKY 81 (256)
T ss_pred CCEEEEECCC-chHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcCCC-ceeEEEecCCCHHHHHHHHHHHHHHc
Confidence 5677777764 6788887776643 458999999988887766665432 222 356678888763211 01
Q ss_pred CCCCEEEEcCC
Q 009708 405 VKCDKVLLDAP 415 (528)
Q Consensus 405 ~~fD~Vl~D~P 415 (528)
+..|.|+.++.
T Consensus 82 ~~id~vi~~A~ 92 (256)
T PRK09186 82 GKIDGAVNCAY 92 (256)
T ss_pred CCccEEEECCc
Confidence 35899998763
|
|
| >PRK06181 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.14 E-value=18 Score=35.35 Aligned_cols=75 Identities=16% Similarity=0.075 Sum_probs=48.8
Q ss_pred CeEEEeCCccchHHHHHHHHc-CCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCCC
Q 009708 337 QSIVDCCAAPGGKTLYMASCL-SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STVK 406 (528)
Q Consensus 337 ~~VLDl~aG~G~kt~~la~~~-~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~~~ 406 (528)
.+||=.| |+|+.+..++..+ ..+.+|++++.++...+.+.+.+...+ ..+.++..|+.+.... ....
T Consensus 2 ~~vlVtG-asg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 78 (263)
T PRK06181 2 KVVIITG-ASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHG--GEALVVPTDVSDAEACERLIEAAVARFGG 78 (263)
T ss_pred CEEEEec-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 3566555 5567777776543 334689999999887776666665544 2477888888764321 0136
Q ss_pred CCEEEEcC
Q 009708 407 CDKVLLDA 414 (528)
Q Consensus 407 fD~Vl~D~ 414 (528)
.|.|+..+
T Consensus 79 id~vi~~a 86 (263)
T PRK06181 79 IDILVNNA 86 (263)
T ss_pred CCEEEECC
Confidence 89998754
|
|
| >PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=82.11 E-value=27 Score=33.52 Aligned_cols=78 Identities=15% Similarity=0.089 Sum_probs=52.6
Q ss_pred CCeEEEeCCccchHHHHHHHHc-CCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCL-SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 405 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~-~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~~ 405 (528)
+.+||=.|+ +|+.+.+++..+ ..+.+|+.++.++...+.....++..+ .++.++..|+.+.... ..+
T Consensus 7 ~~~vlVtG~-sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 83 (239)
T PRK07666 7 GKNALITGA-GRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYG--VKVVIATADVSDYEEVTAAIEQLKNELG 83 (239)
T ss_pred CCEEEEEcC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC--CeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 457888885 678888777654 335589999999887776655555443 3477888888664311 013
Q ss_pred CCCEEEEcCCC
Q 009708 406 KCDKVLLDAPC 416 (528)
Q Consensus 406 ~fD~Vl~D~Pc 416 (528)
..|.|+..+..
T Consensus 84 ~id~vi~~ag~ 94 (239)
T PRK07666 84 SIDILINNAGI 94 (239)
T ss_pred CccEEEEcCcc
Confidence 68999987654
|
|
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=82.02 E-value=30 Score=33.20 Aligned_cols=79 Identities=19% Similarity=0.090 Sum_probs=51.9
Q ss_pred CCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 405 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~~ 405 (528)
+.+||=.|+ +|+.+..++..+. .+.+|++++.++..+..+...+...+. .+.++.+|+.+.... ..+
T Consensus 6 ~~~ilItGa-sg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 82 (251)
T PRK12826 6 GRVALVTGA-ARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGG--KARARQVDVRDRAALKAAVAAGVEDFG 82 (251)
T ss_pred CCEEEEcCC-CCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--eEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 557886665 5777777766543 345899999998877766666655442 377888888763210 013
Q ss_pred CCCEEEEcCCCC
Q 009708 406 KCDKVLLDAPCS 417 (528)
Q Consensus 406 ~fD~Vl~D~Pcs 417 (528)
.+|.|+..+...
T Consensus 83 ~~d~vi~~ag~~ 94 (251)
T PRK12826 83 RLDILVANAGIF 94 (251)
T ss_pred CCCEEEECCCCC
Confidence 689999876543
|
|
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.87 E-value=23 Score=34.21 Aligned_cols=78 Identities=17% Similarity=0.065 Sum_probs=52.9
Q ss_pred CCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 405 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~~ 405 (528)
+.+||=.|+ +|+.+.++++.+- .+.+|+.++.++...+.+...++..+. ++.++.+|+.+.... ..+
T Consensus 4 ~~~vlItG~-sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 80 (258)
T PRK12429 4 GKVALVTGA-ASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGG--KAIGVAMDVTDEEAINAGIDYAVETFG 80 (258)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 456775554 6788888887654 345899999999888777666665543 377788888764321 014
Q ss_pred CCCEEEEcCCC
Q 009708 406 KCDKVLLDAPC 416 (528)
Q Consensus 406 ~fD~Vl~D~Pc 416 (528)
.+|.|+..+..
T Consensus 81 ~~d~vi~~a~~ 91 (258)
T PRK12429 81 GVDILVNNAGI 91 (258)
T ss_pred CCCEEEECCCC
Confidence 68999986544
|
|
| >PRK09291 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.85 E-value=25 Score=34.12 Aligned_cols=77 Identities=21% Similarity=0.084 Sum_probs=51.9
Q ss_pred CeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---CCCCCCEEEE
Q 009708 337 QSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---STVKCDKVLL 412 (528)
Q Consensus 337 ~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---~~~~fD~Vl~ 412 (528)
.+||=.|+ +|+.+..+++.+. .+.+|++++.++.....+....+..+.. +.++.+|+.+.... .....|.|+.
T Consensus 3 ~~vlVtGa-sg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~D~~~~~~~~~~~~~~id~vi~ 79 (257)
T PRK09291 3 KTILITGA-GSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGLA--LRVEKLDLTDAIDRAQAAEWDVDVLLN 79 (257)
T ss_pred CEEEEeCC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCc--ceEEEeeCCCHHHHHHHhcCCCCEEEE
Confidence 46776666 5677777776553 3468999999888777776666655543 67788888764321 1247899998
Q ss_pred cCCC
Q 009708 413 DAPC 416 (528)
Q Consensus 413 D~Pc 416 (528)
++-.
T Consensus 80 ~ag~ 83 (257)
T PRK09291 80 NAGI 83 (257)
T ss_pred CCCc
Confidence 7544
|
|
| >TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=81.73 E-value=33 Score=33.04 Aligned_cols=79 Identities=10% Similarity=0.061 Sum_probs=52.8
Q ss_pred CCeEEEeCCccchHHHHHHHHcCC-CcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 405 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~~-~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~~ 405 (528)
+.+||=.|+ +|+.+..++..+-. +.+|+.++.+......+...++..+. .+.++.+|+.+.... ...
T Consensus 3 ~~~ilItGa-s~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~ 79 (250)
T TIGR03206 3 DKTAIVTGG-GGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKGG--NAQAFACDITDRDSVDTAVAAAEQALG 79 (250)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCC--cEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 567777775 46777777765533 34899999998887777766665442 377888888763211 013
Q ss_pred CCCEEEEcCCCC
Q 009708 406 KCDKVLLDAPCS 417 (528)
Q Consensus 406 ~fD~Vl~D~Pcs 417 (528)
..|.|+..+...
T Consensus 80 ~~d~vi~~ag~~ 91 (250)
T TIGR03206 80 PVDVLVNNAGWD 91 (250)
T ss_pred CCCEEEECCCCC
Confidence 579998876553
|
Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate. |
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=81.72 E-value=4.3 Score=42.87 Aligned_cols=66 Identities=18% Similarity=0.248 Sum_probs=46.9
Q ss_pred cccceeEee-cchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHH
Q 009708 312 LKEGLCAVQ-DESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETA 380 (528)
Q Consensus 312 ~~~G~~~~Q-d~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~ 380 (528)
|.+++.|-| .+....-..+|++.|+++||-+++|-....-+++ .+..+|+|||+||..+..++-.+
T Consensus 11 ~f~~lvY~~~WEDp~vD~~aL~i~~~d~vl~ItSaG~N~L~yL~---~~P~~I~aVDlNp~Q~aLleLKl 77 (380)
T PF11899_consen 11 FFRGLVYAQCWEDPRVDMEALNIGPDDRVLTITSAGCNALDYLL---AGPKRIHAVDLNPAQNALLELKL 77 (380)
T ss_pred hccceeeccccCCcHHHHHHhCCCCCCeEEEEccCCchHHHHHh---cCCceEEEEeCCHHHHHHHHHHH
Confidence 344556655 4444555678899999999999988555444433 34579999999999888776543
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=81.70 E-value=11 Score=38.33 Aligned_cols=101 Identities=22% Similarity=0.282 Sum_probs=59.4
Q ss_pred HhcCCCCCCeEEEeCCcc-chHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccc-cccc-CCC
Q 009708 329 AVVDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT-FADN-STV 405 (528)
Q Consensus 329 ~~l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~-~~~~-~~~ 405 (528)
.....++|++||-.++|. |..++++|+.+ +.+|+++..+++..+.+++ .|.+..+.....+... +... ...
T Consensus 153 ~~~~l~~g~~vLI~g~g~vG~~a~~lA~~~--g~~v~~~~~s~~~~~~~~~----~g~~~v~~~~~~~~~~~l~~~~~~~ 226 (337)
T cd08261 153 RRAGVTAGDTVLVVGAGPIGLGVIQVAKAR--GARVIVVDIDDERLEFARE----LGADDTINVGDEDVAARLRELTDGE 226 (337)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEECCCHHHHHHHHH----hCCCEEecCcccCHHHHHHHHhCCC
Confidence 345677899999987653 55667777765 3679999888888776643 4544322222112111 1111 124
Q ss_pred CCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEE
Q 009708 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463 (528)
Q Consensus 406 ~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvy 463 (528)
.+|.|+- |.|.+ ..+..+++.|+++|+++.
T Consensus 227 ~vd~vld---~~g~~-------------------------~~~~~~~~~l~~~G~~i~ 256 (337)
T cd08261 227 GADVVID---ATGNP-------------------------ASMEEAVELVAHGGRVVL 256 (337)
T ss_pred CCCEEEE---CCCCH-------------------------HHHHHHHHHHhcCCEEEE
Confidence 5898874 33211 125667788888998774
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, |
| >cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members | Back alignment and domain information |
|---|
Probab=81.53 E-value=15 Score=36.20 Aligned_cols=48 Identities=15% Similarity=0.173 Sum_probs=33.7
Q ss_pred hcCCCCCCeEEEeCCcc-chHHHHHHHHcCCCcEEEEEcCChHHHHHHHH
Q 009708 330 VVDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNE 378 (528)
Q Consensus 330 ~l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~ 378 (528)
...+.+|++||=.|+|+ |..++.+|+.++ ..+|++++.++++.+.+++
T Consensus 92 ~~~~~~g~~vlI~g~g~vg~~~i~~a~~~g-~~~vi~~~~~~~~~~~~~~ 140 (277)
T cd08255 92 DAEPRLGERVAVVGLGLVGLLAAQLAKAAG-AREVVGVDPDAARRELAEA 140 (277)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCcEEEECCCHHHHHHHHH
Confidence 45677889888887655 556667777653 2249999999998765543
|
This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD |
| >TIGR02415 23BDH acetoin reductases | Back alignment and domain information |
|---|
Probab=81.48 E-value=28 Score=33.61 Aligned_cols=80 Identities=11% Similarity=-0.029 Sum_probs=51.2
Q ss_pred eEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCCCC
Q 009708 338 SIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STVKC 407 (528)
Q Consensus 338 ~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~~~f 407 (528)
++|=.|+ +|+.+..+++.+- .+.+|+.++.++..++.+.+.+...+. .+.++.+|+.+.... .....
T Consensus 2 ~~lItG~-sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dl~~~~~i~~~~~~~~~~~~~i 78 (254)
T TIGR02415 2 VALVTGG-AQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAGG--KAVAYKLDVSDKDQVFSAIDQAAEKFGGF 78 (254)
T ss_pred EEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--eEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 3455554 5777777776552 345899999988877766666665553 367888888763211 12357
Q ss_pred CEEEEcCCCCCCc
Q 009708 408 DKVLLDAPCSGLG 420 (528)
Q Consensus 408 D~Vl~D~Pcsg~G 420 (528)
|.|+.++.....+
T Consensus 79 d~vi~~ag~~~~~ 91 (254)
T TIGR02415 79 DVMVNNAGVAPIT 91 (254)
T ss_pred CEEEECCCcCCCC
Confidence 9999877654433
|
One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733). |
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.15 E-value=28 Score=33.81 Aligned_cols=79 Identities=15% Similarity=0.066 Sum_probs=52.5
Q ss_pred CCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 405 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~~ 405 (528)
+.+||=.| |+|+.+.+++..+- .+.+|+.++.++...+.+.+.++..+. .+.++.+|+.+.... ...
T Consensus 7 ~~~vlItG-asg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 83 (262)
T PRK13394 7 GKTAVVTG-AASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGG--KAIGVAMDVTNEDAVNAGIDKVAERFG 83 (262)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCc--eEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 56777555 45677777776553 345899999999888777776665543 367788998764321 124
Q ss_pred CCCEEEEcCCCC
Q 009708 406 KCDKVLLDAPCS 417 (528)
Q Consensus 406 ~fD~Vl~D~Pcs 417 (528)
..|.|+..+-+.
T Consensus 84 ~~d~vi~~ag~~ 95 (262)
T PRK13394 84 SVDILVSNAGIQ 95 (262)
T ss_pred CCCEEEECCccC
Confidence 589998866543
|
|
| >PRK05650 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.14 E-value=24 Score=34.68 Aligned_cols=76 Identities=12% Similarity=-0.061 Sum_probs=49.9
Q ss_pred eEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCCCC
Q 009708 338 SIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STVKC 407 (528)
Q Consensus 338 ~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~~~f 407 (528)
+||=.|+ +|+.+..++..+- .+.+|+.++.+...++.+...++..+. .+.++.+|+.+.... ....+
T Consensus 2 ~vlVtGa-sggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~D~~~~~~~~~~~~~i~~~~~~i 78 (270)
T PRK05650 2 RVMITGA-ASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAGG--DGFYQRCDVRDYSQLTALAQACEEKWGGI 78 (270)
T ss_pred EEEEecC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--ceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 4565554 6677777776553 345899999998888777666665543 367788888764321 12468
Q ss_pred CEEEEcCCC
Q 009708 408 DKVLLDAPC 416 (528)
Q Consensus 408 D~Vl~D~Pc 416 (528)
|.|+.++..
T Consensus 79 d~lI~~ag~ 87 (270)
T PRK05650 79 DVIVNNAGV 87 (270)
T ss_pred CEEEECCCC
Confidence 999986543
|
|
| >cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=80.99 E-value=13 Score=38.26 Aligned_cols=103 Identities=17% Similarity=0.273 Sum_probs=59.8
Q ss_pred HhcCCCCCCeEEEeCCcc-chHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccc-ccc-cCCC
Q 009708 329 AVVDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT-FAD-NSTV 405 (528)
Q Consensus 329 ~~l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~-~~~-~~~~ 405 (528)
.....++|++||=.|+|+ |..++++|+.+ +...|+++|.++.+.+.++ .+|.+..+.....+... ... ....
T Consensus 160 ~~~~~~~g~~vlI~g~g~iG~~~~~lak~~-G~~~v~~~~~~~~~~~~~~----~~g~~~~v~~~~~~~~~~i~~~~~~~ 234 (351)
T cd08285 160 ELANIKLGDTVAVFGIGPVGLMAVAGARLR-GAGRIIAVGSRPNRVELAK----EYGATDIVDYKNGDVVEQILKLTGGK 234 (351)
T ss_pred HccCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHH----HcCCceEecCCCCCHHHHHHHHhCCC
Confidence 344567888888887653 33445666664 3346999999998877665 45664322211112111 111 1124
Q ss_pred CCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 406 ~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
.+|+|+- |+|.. ..+..+++.|+++|+++..
T Consensus 235 ~~d~vld---~~g~~-------------------------~~~~~~~~~l~~~G~~v~~ 265 (351)
T cd08285 235 GVDAVII---AGGGQ-------------------------DTFEQALKVLKPGGTISNV 265 (351)
T ss_pred CCcEEEE---CCCCH-------------------------HHHHHHHHHhhcCCEEEEe
Confidence 6898874 43311 1367778889999998843
|
This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >PRK05872 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.97 E-value=25 Score=35.37 Aligned_cols=79 Identities=22% Similarity=0.194 Sum_probs=49.8
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
.|.+||=.|++ |+.+..+++.+. .+.+|+.++.++..++.+.+.+ +....+..+..|+.+.... ..
T Consensus 8 ~gk~vlItGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l---~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 83 (296)
T PRK05872 8 AGKVVVVTGAA-RGIGAELARRLHARGAKLALVDLEEAELAALAAEL---GGDDRVLTVVADVTDLAAMQAAAEEAVERF 83 (296)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---cCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 46688877755 567777776553 3458999999988776655443 2222355556787764211 12
Q ss_pred CCCCEEEEcCCCC
Q 009708 405 VKCDKVLLDAPCS 417 (528)
Q Consensus 405 ~~fD~Vl~D~Pcs 417 (528)
+.+|.|+.++-..
T Consensus 84 g~id~vI~nAG~~ 96 (296)
T PRK05872 84 GGIDVVVANAGIA 96 (296)
T ss_pred CCCCEEEECCCcC
Confidence 5689999876543
|
|
| >cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases | Back alignment and domain information |
|---|
Probab=80.85 E-value=15 Score=37.61 Aligned_cols=102 Identities=21% Similarity=0.275 Sum_probs=58.1
Q ss_pred hcCCCCCCeEEEeCCcc-chHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC-CCCC
Q 009708 330 VVDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS-TVKC 407 (528)
Q Consensus 330 ~l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~-~~~f 407 (528)
.....+|++||-.|+|. |..+.++|+.++ ...|++++-++...+.++ ..|....+.........+.... ...+
T Consensus 154 ~~~~~~~~~vlI~g~g~~g~~~~~lA~~~G-~~~v~~~~~~~~~~~~l~----~~g~~~~~~~~~~~~~~~~~~~~~~~~ 228 (343)
T cd08236 154 LAGITLGDTVVVIGAGTIGLLAIQWLKILG-AKRVIAVDIDDEKLAVAR----ELGADDTINPKEEDVEKVRELTEGRGA 228 (343)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHH----HcCCCEEecCccccHHHHHHHhCCCCC
Confidence 45677888998887654 556667776643 224899988887776553 3455321111111111111111 2359
Q ss_pred CEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 408 DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 408 D~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
|.|+- |+|.+ ..+..+++.|+++|+++..
T Consensus 229 d~vld---~~g~~-------------------------~~~~~~~~~l~~~G~~v~~ 257 (343)
T cd08236 229 DLVIE---AAGSP-------------------------ATIEQALALARPGGKVVLV 257 (343)
T ss_pred CEEEE---CCCCH-------------------------HHHHHHHHHhhcCCEEEEE
Confidence 98873 43321 1366778888999987743
|
This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast |
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.79 E-value=26 Score=33.82 Aligned_cols=118 Identities=19% Similarity=0.101 Sum_probs=64.0
Q ss_pred CCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCCh-HHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINK-GRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~-~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
+.+||-.|+ +|+.+.+++..+- .+.+|++++.+. ...+.+...++..+. .+.++.+|+.+.... ..
T Consensus 6 ~k~vlItGa-sggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (248)
T PRK07806 6 GKTALVTGS-SRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGG--RASAVGADLTDEESVAALMDTAREEF 82 (248)
T ss_pred CcEEEEECC-CCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCC--ceEEEEcCCCCHHHHHHHHHHHHHhC
Confidence 567887775 4667777776553 344788887754 344444444444332 367788898764321 01
Q ss_pred CCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 405 ~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
+.+|.|+.++..+... ...++..+..+.. -...+++.+...++.+|.+|+.+
T Consensus 83 ~~~d~vi~~ag~~~~~--~~~~~~~~~vn~~-------~~~~l~~~~~~~~~~~~~iv~is 134 (248)
T PRK07806 83 GGLDALVLNASGGMES--GMDEDYAMRLNRD-------AQRNLARAALPLMPAGSRVVFVT 134 (248)
T ss_pred CCCcEEEECCCCCCCC--CCCcceeeEeeeH-------HHHHHHHHHHhhccCCceEEEEe
Confidence 3689988876432111 1112211111111 12345677777666667766543
|
|
| >PRK08263 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.75 E-value=23 Score=35.05 Aligned_cols=76 Identities=16% Similarity=0.001 Sum_probs=48.1
Q ss_pred CCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 405 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~~ 405 (528)
+..||=.|+ +|+.+.+++..+. .+.+|++++.++..++.+.... .+.+.++..|+.+.... ..+
T Consensus 3 ~k~vlItGa-sg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 76 (275)
T PRK08263 3 EKVWFITGA-SRGFGRAWTEAALERGDRVVATARDTATLADLAEKY-----GDRLLPLALDVTDRAAVFAAVETAVEHFG 76 (275)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc-----cCCeeEEEccCCCHHHHHHHHHHHHHHcC
Confidence 346777774 6778888877653 3457999999988776554322 22366777887654221 024
Q ss_pred CCCEEEEcCCCC
Q 009708 406 KCDKVLLDAPCS 417 (528)
Q Consensus 406 ~fD~Vl~D~Pcs 417 (528)
.+|.|+..+-..
T Consensus 77 ~~d~vi~~ag~~ 88 (275)
T PRK08263 77 RLDIVVNNAGYG 88 (275)
T ss_pred CCCEEEECCCCc
Confidence 689998865443
|
|
| >PRK07904 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.67 E-value=21 Score=35.00 Aligned_cols=79 Identities=10% Similarity=0.003 Sum_probs=52.7
Q ss_pred CCCCeEEEeCCccchHHHHHHHHc-CC-CcEEEEEcCChHH-HHHHHHHHHHcCCCccEEEEcCcccccccc--------
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCL-SG-QGLVYAIDINKGR-LRILNETAKLHQVNSVIRTIHADLRTFADN-------- 402 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~-~~-~~~v~avD~s~~~-l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~-------- 402 (528)
..+.+||=.|| +|+.+..+++.+ .. +.+|+.++.++.. ++.+.+.++..+.. .++++..|+.+....
T Consensus 6 ~~~~~vlItGa-s~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~-~v~~~~~D~~~~~~~~~~~~~~~ 83 (253)
T PRK07904 6 GNPQTILLLGG-TSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGAS-SVEVIDFDALDTDSHPKVIDAAF 83 (253)
T ss_pred CCCcEEEEEcC-CcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCC-ceEEEEecCCChHHHHHHHHHHH
Confidence 34567888887 577888888764 32 2589999998875 77666666665533 378888888763310
Q ss_pred CCCCCCEEEEcC
Q 009708 403 STVKCDKVLLDA 414 (528)
Q Consensus 403 ~~~~fD~Vl~D~ 414 (528)
..+..|.++.++
T Consensus 84 ~~g~id~li~~a 95 (253)
T PRK07904 84 AGGDVDVAIVAF 95 (253)
T ss_pred hcCCCCEEEEee
Confidence 014689888743
|
|
| >PLN02662 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=80.66 E-value=15 Score=37.17 Aligned_cols=80 Identities=15% Similarity=0.094 Sum_probs=48.1
Q ss_pred CCeEEEeCCccchHHHHHHHHcCCC-cEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc--CCCCCCEEEE
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLSGQ-GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN--STVKCDKVLL 412 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~~~-~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~--~~~~fD~Vl~ 412 (528)
+.+||=.|+ +|..+.+++..+-.. .+|++++.+..............+....++++.+|+.+.... .-..+|.|+.
T Consensus 4 ~~~ilVtGa-tGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 82 (322)
T PLN02662 4 GKVVCVTGA-SGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFH 82 (322)
T ss_pred CCEEEEECC-hHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEE
Confidence 456776664 688888888776433 478888777654332222221122223478899998764321 1235899988
Q ss_pred cCCC
Q 009708 413 DAPC 416 (528)
Q Consensus 413 D~Pc 416 (528)
.+..
T Consensus 83 ~A~~ 86 (322)
T PLN02662 83 TASP 86 (322)
T ss_pred eCCc
Confidence 7654
|
|
| >PRK12742 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=80.62 E-value=25 Score=33.55 Aligned_cols=117 Identities=12% Similarity=0.062 Sum_probs=59.0
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCC-CcEEEEEcC-ChHHHHHHHHHHHHcCCCccEEEEcCcccccccc-----CCCCC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDI-NKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-----STVKC 407 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~-~~~v~avD~-s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~-----~~~~f 407 (528)
.+.+||=.|+ +|+.+..+++.+.. +.+|+.+.. +++.++.+. ...+ +.++..|..+.... ....+
T Consensus 5 ~~k~vlItGa-sggIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~---~~~~----~~~~~~D~~~~~~~~~~~~~~~~i 76 (237)
T PRK12742 5 TGKKVLVLGG-SRGIGAAIVRRFVTDGANVRFTYAGSKDAAERLA---QETG----ATAVQTDSADRDAVIDVVRKSGAL 76 (237)
T ss_pred CCCEEEEECC-CChHHHHHHHHHHHCCCEEEEecCCCHHHHHHHH---HHhC----CeEEecCCCCHHHHHHHHHHhCCC
Confidence 3667886665 66778777776543 347776654 444444332 2223 34556676543210 12468
Q ss_pred CEEEEcCCCCCCccccCCchhhccCCHHHHHHHHH----HHHHHHHHHhccCcCCCEEEEEcC
Q 009708 408 DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKI----LQDELLDAASLLVKPGGVLVYSTC 466 (528)
Q Consensus 408 D~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~----~q~~lL~~a~~~LkpGG~LvysTc 466 (528)
|.++..+-....+.. +..+.++...... -...++..+...++.+|.+|+.+.
T Consensus 77 d~li~~ag~~~~~~~-------~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS 132 (237)
T PRK12742 77 DILVVNAGIAVFGDA-------LELDADDIDRLFKINIHAPYHASVEAARQMPEGGRIIIIGS 132 (237)
T ss_pred cEEEECCCCCCCCCc-------ccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCeEEEEec
Confidence 998876543221111 1122233222211 112344566666677787776443
|
|
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.58 E-value=24 Score=34.43 Aligned_cols=75 Identities=24% Similarity=0.050 Sum_probs=48.5
Q ss_pred eEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc----------CCCC
Q 009708 338 SIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN----------STVK 406 (528)
Q Consensus 338 ~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~----------~~~~ 406 (528)
+||=.|++ |+.+..++..+. .+.+|+.++.++..++.+..... + ..+.++++|+.+.... ..++
T Consensus 3 ~vlItGas-g~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~--~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~ 77 (260)
T PRK08267 3 SIFITGAA-SGIGRATALLFAAEGWRVGAYDINEAGLAALAAELG--A--GNAWTGALDVTDRAAWDAALADFAAATGGR 77 (260)
T ss_pred EEEEeCCC-chHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc--C--CceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 46666654 677777776543 34589999999887776655433 2 2477888898764311 0246
Q ss_pred CCEEEEcCCCC
Q 009708 407 CDKVLLDAPCS 417 (528)
Q Consensus 407 fD~Vl~D~Pcs 417 (528)
+|.|+..+-..
T Consensus 78 id~vi~~ag~~ 88 (260)
T PRK08267 78 LDVLFNNAGIL 88 (260)
T ss_pred CCEEEECCCCC
Confidence 89999866543
|
|
| >COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=80.57 E-value=2.3 Score=44.67 Aligned_cols=119 Identities=20% Similarity=0.303 Sum_probs=68.8
Q ss_pred cchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccc----------c--ccc--CCCCCCEE
Q 009708 346 PGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT----------F--ADN--STVKCDKV 410 (528)
Q Consensus 346 ~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~----------~--~~~--~~~~fD~V 410 (528)
-|..++-+|..+. .+.+|+|+||++.+++.+.+ |-. .+..-+... + ... .-...|++
T Consensus 17 LGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~-----G~~---~i~e~~~~~~v~~~v~~g~lraTtd~~~l~~~dv~ 88 (436)
T COG0677 17 LGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNR-----GES---YIEEPDLDEVVKEAVESGKLRATTDPEELKECDVF 88 (436)
T ss_pred cccccHHHHHHHHHcCCceEeEeCCHHHHHHHhC-----Ccc---eeecCcHHHHHHHHHhcCCceEecChhhcccCCEE
Confidence 3444444443332 24689999999999987643 222 112222111 0 000 01257888
Q ss_pred EEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHHHhhCCCce
Q 009708 411 LLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFS 488 (528)
Q Consensus 411 l~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~l~~~~~~~ 488 (528)
++-.|.--.+ .+.||+.+- .. -.+.....|++|-.+++- .|..|.-.|+++...++..++..
T Consensus 89 iI~VPTPl~~--~~~pDls~v------~~-------aa~sIa~~L~kG~LVIlE-ST~~PGTTe~v~~plle~~sgL~ 150 (436)
T COG0677 89 IICVPTPLKK--YREPDLSYV------ES-------AARSIAPVLKKGDLVILE-STTPPGTTEEVVKPLLEERSGLK 150 (436)
T ss_pred EEEecCCcCC--CCCCChHHH------HH-------HHHHHHHhcCCCCEEEEe-cCCCCCcHHHHHHHHHhhcCCCc
Confidence 8777764333 266765442 22 255667889987665554 56778888889999988755443
|
|
| >cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=80.54 E-value=14 Score=37.83 Aligned_cols=98 Identities=14% Similarity=0.078 Sum_probs=56.0
Q ss_pred cCCCCCCeEEEeCCcc-chHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCE
Q 009708 331 VDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDK 409 (528)
Q Consensus 331 l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~ 409 (528)
+.+++|++||=.|+|+ |..+.++|+.+ +.+|++++.++++++.++ .+|.+..+.....|........ ..+|.
T Consensus 159 ~~~~~~~~vlV~g~g~iG~~~~~~a~~~--G~~vi~~~~~~~~~~~~~----~~g~~~~i~~~~~~~~~~~~~~-~~~d~ 231 (333)
T cd08296 159 SGAKPGDLVAVQGIGGLGHLAVQYAAKM--GFRTVAISRGSDKADLAR----KLGAHHYIDTSKEDVAEALQEL-GGAKL 231 (333)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHH----HcCCcEEecCCCccHHHHHHhc-CCCCE
Confidence 4677888888887533 22334555553 247999999988877664 3565431211111221111111 34888
Q ss_pred EEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEE
Q 009708 410 VLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463 (528)
Q Consensus 410 Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvy 463 (528)
|+- |+|.+. .+..+++.++++|+++.
T Consensus 232 vi~---~~g~~~-------------------------~~~~~~~~l~~~G~~v~ 257 (333)
T cd08296 232 ILA---TAPNAK-------------------------AISALVGGLAPRGKLLI 257 (333)
T ss_pred EEE---CCCchH-------------------------HHHHHHHHcccCCEEEE
Confidence 873 332111 36777888999998884
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal |
| >KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=80.40 E-value=3.1 Score=40.16 Aligned_cols=64 Identities=14% Similarity=0.203 Sum_probs=50.2
Q ss_pred CCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccc
Q 009708 332 DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 399 (528)
Q Consensus 332 ~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~ 399 (528)
..-..+.|+++|-||||.|..+... +..++..||++...+.-++...+... .+..+.++|+..+
T Consensus 47 ~~~~~~~v~eIgPgpggitR~il~a--~~~RL~vVE~D~RFip~LQ~L~EAa~--~~~~IHh~D~LR~ 110 (326)
T KOG0821|consen 47 GNLTNAYVYEIGPGPGGITRSILNA--DVARLLVVEKDTRFIPGLQMLSEAAP--GKLRIHHGDVLRF 110 (326)
T ss_pred cccccceeEEecCCCCchhHHHHhc--chhheeeeeeccccChHHHHHhhcCC--cceEEecccccee
Confidence 3334678999999999999988864 34688999999999988888777543 3477888888764
|
|
| >PRK09072 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.30 E-value=26 Score=34.31 Aligned_cols=77 Identities=18% Similarity=0.151 Sum_probs=49.7
Q ss_pred CCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC--------CCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS--------TVK 406 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~--------~~~ 406 (528)
+.+||=.|++ |+.+..++..+. .+.+|++++.++..++.+...+ .. ...+.++..|+.+..... .+.
T Consensus 5 ~~~vlItG~s-~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~--~~~~~~~~~D~~d~~~~~~~~~~~~~~~~ 80 (263)
T PRK09072 5 DKRVLLTGAS-GGIGQALAEALAAAGARLLLVGRNAEKLEALAARL-PY--PGRHRWVVADLTSEAGREAVLARAREMGG 80 (263)
T ss_pred CCEEEEECCC-chHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH-hc--CCceEEEEccCCCHHHHHHHHHHHHhcCC
Confidence 5567777665 566666665442 3468999999988887666554 22 234778888887643210 246
Q ss_pred CCEEEEcCCC
Q 009708 407 CDKVLLDAPC 416 (528)
Q Consensus 407 fD~Vl~D~Pc 416 (528)
.|.|+..+..
T Consensus 81 id~lv~~ag~ 90 (263)
T PRK09072 81 INVLINNAGV 90 (263)
T ss_pred CCEEEECCCC
Confidence 8999986543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 528 | ||||
| 2yxl_A | 450 | Crystal Structure Of Ph0851 Length = 450 | 3e-41 | ||
| 1sqf_A | 429 | The Crystal Structure Of E. Coli Fmu Binary Complex | 2e-36 | ||
| 1ixk_A | 315 | Crystal Structure Analysis Of Methyltransferase Hom | 9e-30 | ||
| 3m6u_A | 464 | Multi-Site-Specific 16s Rrna Methyltransferase Rsmf | 4e-29 | ||
| 3m6w_A | 464 | Multi-Site-Specific 16s Rrna Methyltransferase Rsmf | 5e-29 | ||
| 3m6x_A | 464 | Multi-Site-Specific 16s Rrna Methyltransferase Rsmf | 3e-28 | ||
| 2frx_A | 479 | Crystal Structure Of Yebu, A M5c Rna Methyltransfer | 3e-24 | ||
| 3a4t_A | 274 | Crystal Structure Of Atrm4 From M.Jannaschii With S | 2e-22 | ||
| 3m4x_A | 456 | Structure Of A Ribosomal Methyltransferase Length = | 1e-20 | ||
| 2b9e_A | 309 | Human Nsun5 Protein Length = 309 | 7e-13 | ||
| 4fp9_A | 360 | Human Mterf4-Nsun4 Protein Complex Length = 360 | 4e-12 | ||
| 4fzv_A | 359 | Crystal Structure Of The Human Mterf4:nsun4:sam Ter | 6e-12 |
| >pdb|2YXL|A Chain A, Crystal Structure Of Ph0851 Length = 450 | Back alignment and structure |
|
| >pdb|1SQF|A Chain A, The Crystal Structure Of E. Coli Fmu Binary Complex With S- Adenosylmethionine At 2.1 A Resolution Length = 429 | Back alignment and structure |
|
| >pdb|1IXK|A Chain A, Crystal Structure Analysis Of Methyltransferase Homolog Protein From Pyrococcus Horikoshii Length = 315 | Back alignment and structure |
|
| >pdb|3M6U|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From Thermus Thermophilus In Space Group 43 Length = 464 | Back alignment and structure |
|
| >pdb|3M6W|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From Thermus Thermophilus In Space Group P21212 In Complex With S-Adenosyl-L- Methionine Length = 464 | Back alignment and structure |
|
| >pdb|3M6X|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From Thermus Thermophilus In Space Group P21212 Length = 464 | Back alignment and structure |
|
| >pdb|2FRX|A Chain A, Crystal Structure Of Yebu, A M5c Rna Methyltransferase From E.Coli Length = 479 | Back alignment and structure |
|
| >pdb|3A4T|A Chain A, Crystal Structure Of Atrm4 From M.Jannaschii With Sinefungin Length = 274 | Back alignment and structure |
|
| >pdb|3M4X|A Chain A, Structure Of A Ribosomal Methyltransferase Length = 456 | Back alignment and structure |
|
| >pdb|2B9E|A Chain A, Human Nsun5 Protein Length = 309 | Back alignment and structure |
|
| >pdb|4FP9|A Chain A, Human Mterf4-Nsun4 Protein Complex Length = 360 | Back alignment and structure |
|
| >pdb|4FZV|A Chain A, Crystal Structure Of The Human Mterf4:nsun4:sam Ternary Complex Length = 359 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 528 | |||
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 1e-147 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 1e-132 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 5e-90 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 3e-86 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 4e-84 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 6e-81 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 7e-76 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 5e-74 | |
| 3d3b_A | 141 | Protein NUSB, N utilization substance protein B; N | 4e-13 | |
| 3r2d_A | 149 | Protein NUSB, N utilization substance protein B; c | 1e-10 | |
| 1eyv_A | 156 | NUSB protein, N-utilizing substance protein B homo | 2e-10 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 5e-10 | |
| 1tzv_A | 142 | NUSB protein, N utilization substance protein B ho | 9e-10 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 2e-09 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 5e-09 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-06 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 7e-09 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 8e-09 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 2e-08 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 2e-07 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 4e-07 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 7e-07 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 2e-06 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 6e-06 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 6e-06 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 9e-06 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 2e-05 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 2e-05 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 2e-05 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 3e-05 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 3e-05 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 4e-05 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 5e-05 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 7e-05 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 1e-04 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 2e-04 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 3e-04 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 3e-04 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 3e-04 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 4e-04 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 6e-04 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 6e-04 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 7e-04 |
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} Length = 450 | Back alignment and structure |
|---|
Score = 428 bits (1102), Expect = e-147
Identities = 124/479 (25%), Positives = 207/479 (43%), Gaps = 33/479 (6%)
Query: 50 TQNLNLEVSPHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDD 109
+ L + P + + +R+ + + +
Sbjct: 3 AEKKKLSIPPKGIRAIIEAIRLGEIIKPSQYA--------------KREAFK-KHDVEEA 47
Query: 110 RDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPY 169
R++T I ++ + +D +I + T ++P L LR+ + D P
Sbjct: 48 WLNRVLTMIFYDIMKKQGLIDKVIKEIVG--VTPLILDPWLRAALRVAVDIALFHD-PSS 104
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
+ A + V +L K P PK + L Y
Sbjct: 105 QTIKNLRWKASDFISSRTHPYVGMYFWD-LLDKIFEYKPNPK------NELEELEWKYLA 157
Query: 230 PVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHEL 289
P W++ R LG E N S+R N+ K +++ +L + V
Sbjct: 158 PSWLIERVKGILGDETEDFFRSVNKRHEWISIRVNTLK-ANVEEVIGELE--EDGVEVVR 214
Query: 290 SLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGK 349
S + +++K N + EG VQ+E++ + V+DP+PG+++VD AAPGGK
Sbjct: 215 SERVPTILKIKGP-YNFDTSSAFNEGKIIVQEEASAVASIVLDPKPGETVVDLAAAPGGK 273
Query: 350 TLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC-D 408
T ++A + +G +YA D++K R++ L + K + +++ + D R + + D
Sbjct: 274 TTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGI-KIVKPLVKDARKAPEIIGEEVAD 332
Query: 409 KVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 468
KVLLDAPC+ G + K +LRW R + + E+ LQ ELL++A+ LVKPGG L+Y+TCSI
Sbjct: 333 KVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSI 392
Query: 469 DPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLVRA 527
EENE+ + FL HPEF + P F G + P +HS G F A L ++
Sbjct: 393 FKEENEKNIRWFLNVHPEFKLVPLKSPYDPGF--LEGTMRAWPHRHSTIGFFYALLEKS 449
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A Length = 429 | Back alignment and structure |
|---|
Score = 390 bits (1004), Expect = e-132
Identities = 124/467 (26%), Positives = 211/467 (45%), Gaps = 47/467 (10%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R+++A + ++ G + L + + D+D L+ ++
Sbjct: 8 RSMAAQAVEQVVEQGQSLSNI------------------LPPLQQKVSDKDKALLQELCF 49
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVRLAK 180
G +R LD LI L + + + + ++ +G Y+++ +PP+A + E V A
Sbjct: 50 GVLRTLSQLDWLINKLMA--RPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAI 107
Query: 181 VALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKY 240
RP L+NG+LR+ + L A+ A Y HP W+++R K
Sbjct: 108 AIKRPQLKGLINGVLRQF--QRQQEELL---------AEFNASDARYLHPSWLLKRLQKA 156
Query: 241 LGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRVK 300
E+ ++ NN P LR N +R + L+ + + + +R++
Sbjct: 157 YP-EQWQSIVEANNQRPPMWLRINRTH-HSRDSWLALLD--EAGMKGFPHADYPDAVRLE 212
Query: 301 TGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQ 360
T V ++G VQD SA + + PQ G+ I+D CAAPGGKT ++ ++ +
Sbjct: 213 TP-APVHALPGFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILE-VAPE 270
Query: 361 GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC-DKVLLDAPCSGL 419
V A+DI++ RL + + K + D R + + D++LLDAPCS
Sbjct: 271 AQVVAVDIDEQRLSRVYDNLKRLGMK--ATVKQGDGRYPSQWCGEQQFDRILLDAPCSAT 328
Query: 420 GVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEA 479
GV+ + D++W RR D+ EL LQ E+LDA +K GG LVY+TCS+ PEEN +++A
Sbjct: 329 GVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKA 388
Query: 480 FLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLVR 526
FL R + + + + P DG F A+L++
Sbjct: 389 FLQRTADAELCETG-------TPEQPGKQNLPGAEEGDGFFYAKLIK 428
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 Length = 315 | Back alignment and structure |
|---|
Score = 277 bits (712), Expect = 5e-90
Identities = 88/312 (28%), Positives = 145/312 (46%), Gaps = 15/312 (4%)
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK 282
+ R+ + G E AI++ R N+ K ++ DLV +LN K
Sbjct: 10 KLLRLGYSKLFADRYFQLWG-ERAIRIAEAMEKPLPRCFRVNTLK-ISVQDLVKRLN--K 65
Query: 283 LQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 342
+ E + ++ GL +Q+ S+ +DP+PG+ + D
Sbjct: 66 KGFQFKRVPWAKEGFCLTREPFSITSTPEFLTGLIYIQEASSMYPPVALDPKPGEIVADM 125
Query: 343 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 402
AAPGGKT Y+A + G++YA D+++ RLR V +VI H+ +
Sbjct: 126 AAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVI-LFHSSSLHIGE- 183
Query: 403 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV 462
V+ DK+LLDAPC+G G + K + +WNR ++D++ + LQ LL+ ++KPGG+LV
Sbjct: 184 LNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILV 243
Query: 463 YSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSD--------PIKH 514
YSTCS++PEENE ++ L + + + P P+ + P H
Sbjct: 244 YSTCSLEPEENEFVIQWA-LDNFDVELLPLKYGEPALTNPFGIELSEEIKNARRLYPDVH 302
Query: 515 SLDGAFAARLVR 526
G F A++ +
Sbjct: 303 ETSGFFIAKIRK 314
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* Length = 464 | Back alignment and structure |
|---|
Score = 273 bits (700), Expect = 3e-86
Identities = 89/306 (29%), Positives = 136/306 (44%), Gaps = 18/306 (5%)
Query: 230 PVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHEL 289
P + R + LG+E L ++ LR N+ K + +P
Sbjct: 3 PKAFLSRMAELLGEEFPAFLKALTEGKRTYGLRVNTLK-LPPEAFQRISPWPLRPIPW-- 59
Query: 290 SLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGK 349
E GL +Q+ SA V ++DP+PG+ ++D AAPGGK
Sbjct: 60 ---CQEGFYYPEE-ARPGPHPFFYAGLYYIQEPSAQAVGVLLDPKPGERVLDLAAAPGGK 115
Query: 350 TLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDK 409
T ++A+ + G+GL+ A +++ R+R L E + + A R A+ +
Sbjct: 116 TTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAPLAV--TQAPPRALAEAFGTYFHR 173
Query: 410 VLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSID 469
VLLDAPCSG G+ K + + + + +Q LL AS L+ PGGVLVYSTC+
Sbjct: 174 VLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFA 233
Query: 470 PEENEERVEAFLLRHPEFSIDPAD-GLVPSDFVTKHGFFFSD--------PIKHSLDGAF 520
PEENE V FL HPEF ++ A + + V + G + P + +G F
Sbjct: 234 PEENEGVVAHFLKAHPEFRLEDARLHPLFAPGVPEWGEGNPELLKTARLWPHRLEGEGHF 293
Query: 521 AARLVR 526
AR +
Sbjct: 294 LARFRK 299
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} Length = 456 | Back alignment and structure |
|---|
Score = 267 bits (684), Expect = 4e-84
Identities = 76/309 (24%), Positives = 131/309 (42%), Gaps = 23/309 (7%)
Query: 228 SHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ-VP 286
+ P ++++ LG+E + R N K D+V + +LQ P
Sbjct: 7 TLPQQFIKKYRLLLGEEASDFFSALEQGSVKKGFRWNPLK-PAGLDMVQTYHSEELQPAP 65
Query: 287 HELSLHLDEFIRVKTGLQNVIQAG--LLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
+ G + L + G Q+ SA +V +PG+ ++D CA
Sbjct: 66 Y-----------SNEGFLGTVNGKSFLHQAGYEYSQEPSAMIVGTAAAAKPGEKVLDLCA 114
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 404
APGGK+ +A+ + G+GL+ +I R +IL+E + V++ I + + +
Sbjct: 115 APGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAI-VTNHAPAELVPHFS 173
Query: 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464
D++++DAPCSG G+ K + E + Q E+L +A ++K G L+YS
Sbjct: 174 GFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYS 233
Query: 465 TCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSD-------PIKHSLD 517
TC+ PEENEE + + +P + S ++ G P K +
Sbjct: 234 TCTFAPEENEEIISWLVENYPVTIEEIPLTQSVSSGRSEWGSVAGLEKTIRIWPHKDQGE 293
Query: 518 GAFAARLVR 526
G F A+L
Sbjct: 294 GHFVAKLTF 302
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} Length = 479 | Back alignment and structure |
|---|
Score = 259 bits (664), Expect = 6e-81
Identities = 83/311 (26%), Positives = 139/311 (44%), Gaps = 17/311 (5%)
Query: 227 YSHPVWMVRRWTKYLGQE-EAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
P + + + + + S+R N+ K ++ AD +
Sbjct: 6 VYFPDAFLTQMREAMPSTLSFDDFLAACQRPLRRSIRVNTLK-ISVADFLQLTA--PYGW 62
Query: 286 PHELSLHLDEFIRVKTGLQNVIQAGLLKE---GLCAVQDESAGLVVAV--VDPQPGQSIV 340
+E ++ ++ + G E GL +Q+ S+ L VA D Q ++
Sbjct: 63 TLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVM 122
Query: 341 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400
D AAPG KT +++ ++ +G + A + + R+++L+ +++V H D R F
Sbjct: 123 DVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVA-LTHFDGRVFG 181
Query: 401 DNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGV 460
D +LLDAPCSG GV+ K D N E +E+ Q EL+D+A ++PGG
Sbjct: 182 AAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGT 241
Query: 461 LVYSTCSIDPEENEERVEAFLLRHPE-FSIDPADGLVP--SDFVTKHGF--FFSDPIKHS 515
LVYSTC+++ EENE +P+ P L P + +T+ GF F P +
Sbjct: 242 LVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFPGANKALTEEGFLHVF--PQIYD 299
Query: 516 LDGAFAARLVR 526
+G F ARL +
Sbjct: 300 CEGFFVARLRK 310
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A Length = 274 | Back alignment and structure |
|---|
Score = 239 bits (613), Expect = 7e-76
Identities = 75/283 (26%), Positives = 126/283 (44%), Gaps = 23/283 (8%)
Query: 253 NNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLL 312
+ +R N+ K + L +L + + LD VK ++
Sbjct: 5 YKGEKMQFIRVNTLK-INPEVLKKRLENKGVVLEKT---FLDYAFEVKKSPFSIGSTPEY 60
Query: 313 KEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGR 372
G Q S+ + V++P+ I+D CAAPGGKT ++A + +G + A++I+K R
Sbjct: 61 LFGYYMPQSISSMIPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTR 120
Query: 373 LRILNETAKLHQVNSVIRTIHADLRTFAD---NSTVKCDKVLLDAPCSGLGVLSKRADLR 429
+ L V + I I+AD+R + D + + DK+LLDAPCSG + K
Sbjct: 121 TKALKSNINRMGVLNTI-IINADMRKYKDYLLKNEIFFDKILLDAPCSGNIIKDK----N 175
Query: 430 WNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSI 489
N ED++ + Q EL+D L+K G LVYSTCS++ EENEE ++ L + + +
Sbjct: 176 RNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSMEVEENEEVIKYILQKRNDVEL 235
Query: 490 DPADGLVPSDFVTKHGFFFSDPIK------HSLDGAFAARLVR 526
+ ++ + + F A+L +
Sbjct: 236 II----IKANEFKGINIKEGYIKGTLRVFPPN-EPFFIAKLRK 273
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 Length = 309 | Back alignment and structure |
|---|
Score = 236 bits (604), Expect = 5e-74
Identities = 75/291 (25%), Positives = 114/291 (39%), Gaps = 27/291 (9%)
Query: 260 SLRANSRKGVTRADLVMQLNLLKLQV-PHELSLHLDEFIRVKTGLQNVIQAGLL------ 312
+R N+ K D+V SL ++ K L + + LL
Sbjct: 13 FVRVNTLK-TCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFLLDPLMPELLVFPAQT 71
Query: 313 --------KEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVY 364
+ G +QD ++ L ++DP PG ++D CAAPG KT ++A+ L QG ++
Sbjct: 72 DLHEHPLYRAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIF 131
Query: 365 AIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA--DNSTVKCDKVLLDAPCSGLGVL 422
A D++ RL + V+ D + D + +LLD CSG G+
Sbjct: 132 AFDLDAKRLASMATLLARAGVSCCE-LAEEDFLAVSPSDPRYHEVHYILLDPSCSGSGMP 190
Query: 423 SKRADLRWNRRLED--MEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAF 480
S++ + + L Q L A LVYSTCS+ EENE+ V
Sbjct: 191 SRQLEEPGAGTPSPVRLHALAGFQQRALCHALTF-PSLQRLVYSTCSLCQEENEDVVRDA 249
Query: 481 LLRHP-EFSIDPADGLVP----SDFVTKHGFFFSDPIKHSLDGAFAARLVR 526
L ++P F + PA P S F + P G F A + R
Sbjct: 250 LQQNPGAFRLAPALPAWPHRGLSTFPGAEHCLRASPETTLSSGFFVAVIER 300
|
| >3d3b_A Protein NUSB, N utilization substance protein B; NUSB, NUSE, NUT site, phage lambda, lambdan antitermina antitermination; HET: NHE; 1.30A {Escherichia coli} PDB: 3d3c_A 3imq_A 1ey1_A Length = 141 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 4e-13
Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIV-K 163
+D+ D D+ +++ G YLD L+ + + + + +LRI YE+ +
Sbjct: 40 QDVKDVDVLYFRELLAGVATNTAYLDGLMK--PYLSRLLEELGQVEKAVLRIALYELSKR 97
Query: 164 LDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKL 198
D+P ++E + LAK + VNG+L K
Sbjct: 98 SDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKA 132
|
| >3r2d_A Protein NUSB, N utilization substance protein B; cross species NUSB-NUSE-RNA interaction; 2.20A {Aquifex aeolicus} PDB: 2jr0_A 3r2c_A* Length = 149 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 1e-10
Identities = 21/96 (21%), Positives = 36/96 (37%), Gaps = 4/96 (4%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K+ D + +V +R +D +I + + + LR+G E++ L
Sbjct: 40 KNKDAYEY--AKKLVDTAVRHIEEIDSIIEKHL-KGWSIDRLGYVERNALRLGVAELIFL 96
Query: 165 DMPPYAVV-DENVRLAKVALRPGAGNLVNGILRKLV 199
V + V L K AG VNG+L +
Sbjct: 97 KSKEPGRVFIDIVDLVKKYADEKAGKFVNGVLSAIY 132
|
| >1eyv_A NUSB protein, N-utilizing substance protein B homolog; helical bundle, structural genomics, PSI, protein structure initiative; 1.60A {Mycobacterium tuberculosis} SCOP: a.79.1.1 Length = 156 | Back alignment and structure |
|---|
Score = 58.2 bits (141), Expect = 2e-10
Identities = 25/104 (24%), Positives = 40/104 (38%), Gaps = 2/104 (1%)
Query: 97 ERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRI 156
R K R + G ++D LI T + + ILR+
Sbjct: 37 TRAALAEAKPDIARLHPYTAAVARGVSEHAAHIDDLITAHL-RGWTLDRLPAVDRAILRV 95
Query: 157 GFYEIVKLDMPPYAVV-DENVRLAKVALRPGAGNLVNGILRKLV 199
+E++ P VV DE V+LAK + VNG+L +++
Sbjct: 96 SVWELLHAADVPEPVVVDEAVQLAKELSTDDSPGFVNGVLGQVM 139
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* Length = 185 | Back alignment and structure |
|---|
Score = 58.0 bits (140), Expect = 5e-10
Identities = 20/155 (12%), Positives = 41/155 (26%), Gaps = 21/155 (13%)
Query: 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH 393
+VD G T ++A VYA D+ + L ++ + + I
Sbjct: 21 DDESIVVDATMGNGNDTAFLAGL---SKKVYAFDVQEQALGKTSQRLSDLGIENT-ELIL 76
Query: 394 ADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASL 453
+ + AD + E ++
Sbjct: 77 DGHENLDHYVREPIRAAIFNLG------YLPSADKSVITKPHTTL-------EAIEKILD 123
Query: 454 LVKPGGVL---VYSTCSIDPEENEERVEAFLLRHP 485
++ GG L +Y E + V +++
Sbjct: 124 RLEVGGRLAIMIYYGHDGGDMEKDA-VLEYVIGLD 157
|
| >1tzv_A NUSB protein, N utilization substance protein B homolog; RNA-protein interaction, transcriptional antitermination, transcription regulation; 1.35A {Thermotoga maritima} SCOP: a.79.1.1 PDB: 1tzu_A 1tzt_A 1tzw_A 1tzx_A* Length = 142 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 9e-10
Identities = 21/99 (21%), Positives = 40/99 (40%), Gaps = 2/99 (2%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
+ D + + G +D LI ++ + + + + +LR+ YE+
Sbjct: 34 ILDETYDKKAKEDARRYIRGIKENLSMIDDLISRYL-EKWSLNRLSVVDRNVLRLATYEL 92
Query: 162 VKLDMPPYAVV-DENVRLAKVALRPGAGNLVNGILRKLV 199
+ P V DE + +AK +G VNGIL ++
Sbjct: 93 LFEKDIPIEVTIDEAIEIAKRYGTENSGKFVNGILDRIA 131
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* Length = 336 | Back alignment and structure |
|---|
Score = 58.3 bits (141), Expect = 2e-09
Identities = 29/145 (20%), Positives = 54/145 (37%), Gaps = 34/145 (23%)
Query: 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH 393
+VD A G ++ +YAIDIN + +L + KL+++ I I
Sbjct: 194 SLNDVVVDMFAGVGPFSIACK----NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPIL 249
Query: 394 ADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASL 453
+D+R ++V+++ P + +D A
Sbjct: 250 SDVREVDVK----GNRVIMNLPKFA--------------------------HKFIDKALD 279
Query: 454 LVKPGGVLVYSTCSIDPEENEERVE 478
+V+ GGV+ Y T D ++ + E
Sbjct: 280 IVEEGGVIHYYTIGKDFDKAIKLFE 304
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 58.3 bits (140), Expect = 5e-09
Identities = 65/411 (15%), Positives = 129/411 (31%), Gaps = 130/411 (31%)
Query: 150 LLQILRIGF------YEIVKLDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKD 203
+L + F ++ DMP + E + + + + V+G LR L
Sbjct: 21 ILSVFEDAFVDNFDCKDV--QDMPKSILSKEEID--HIIMSK---DAVSGTLRLFWTLLS 73
Query: 204 NNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLM-------VWNNSD 256
E + L Y +++ Q + M ++N++
Sbjct: 74 KQE------EMVQKFVEEVLRINYK---FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124
Query: 257 PSFSLRANSRKGVTRADLVMQLN--LLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKE 314
F+ + V+R ++L LL+L+ + + G+ G
Sbjct: 125 V-FA-----KYNVSRLQPYLKLRQALLELRPAKNVLID---------GV-----LG---- 160
Query: 315 GLCAVQDESAG---LVVAVVDPQPGQSIVDCCAAPGGKTLY---MASCLSG-------QG 361
+G + + V Q C ++ + +C S Q
Sbjct: 161 ---------SGKTWVALDVCLSYKVQ-----CKMDFK--IFWLNLKNCNSPETVLEMLQK 204
Query: 362 LVYAIDINKGRL--RILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGL 419
L+Y ID N N ++H + + +R R C LL
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELR------RLLKSKPYENC---LL------- 248
Query: 420 GVLSKRADLRWNRRLEDMEEL--KIL---QD-ELLDAASLLVKPGGVLVYSTCSIDPEEN 473
VL ++ N + + L KIL + ++ D S L + + ++ P+E
Sbjct: 249 -VLL---NV-QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303
Query: 474 EERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARL 524
+ + +L P D +P + +T + P + S+ A +
Sbjct: 304 KSLLLKYL------DCRPQD--LPREVLTTN------PRRLSI---IAESI 337
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.9 bits (118), Expect = 2e-06
Identities = 64/382 (16%), Positives = 126/382 (32%), Gaps = 95/382 (24%)
Query: 98 RTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIG 157
+ L T+ + VTD + LDH L DE LLL+ L
Sbjct: 267 KIL-LTTRF------KQVTDFLSAATTTHISLDHHSMTLTPDE----VKS-LLLKYL--- 311
Query: 158 FYEIVKLDMPPYAVVDENVRLAKVA--LRPGAGNLVNGILRKLVL--LKDNNSLPLPKLE 213
+ D+P + RL+ +A +R G N + + L L LE
Sbjct: 312 --DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN--WKHVNCDKLTTIIESSLNVLE 367
Query: 214 GND-RAQARALATIYSHPVW-----MVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRK 267
+ R L+ ++ + W + + ++V N +SL K
Sbjct: 368 PAEYRKMFDRLS-VFPPSAHIPTILLSLIWFD--VIKSDVMVVV--NKLHKYSLVEKQPK 422
Query: 268 GVTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLV 327
T + + L LK+++ +E +LH ++++ + + S L+
Sbjct: 423 ESTISIPSIYL-ELKVKLENEYALH-----------RSIVDHYNIPKTFD-----SDDLI 465
Query: 328 VAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS 387
+D Y S + + + + + + +
Sbjct: 466 PPYLDQ------------------YFYS-----HIGHHL-----------KNIEHPERMT 491
Query: 388 VIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRR--LEDMEELKILQD 445
+ R + D R F + ++ D +A S L L L++ + ++ + + L +
Sbjct: 492 LFRMVFLDFR-FLEQ-KIRHDSTAWNASGSILNTLQ---QLKFYKPYICDNDPKYERLVN 546
Query: 446 ELLDAASLLVKPGGVLVYSTCS 467
+LD L K L+ S +
Sbjct: 547 AILD---FLPKIEENLICSKYT 565
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197 | Back alignment and structure |
|---|
Score = 54.9 bits (132), Expect = 7e-09
Identities = 30/161 (18%), Positives = 54/161 (33%), Gaps = 19/161 (11%)
Query: 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH 393
+ G ++VD G T ++AS + G V+ DI + + + + I
Sbjct: 21 KEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIK 80
Query: 394 ADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASL 453
+ V+ + D + R E + L A
Sbjct: 81 DGHQNMDKYIDCPVKAVMFNLG------YLPSGDHSISTRPETTI-------QALSKAME 127
Query: 454 LVKPGG---VLVYSTCSIDPEENEERVEAFL--LRHPEFSI 489
L+ GG V++Y EE +E+V FL + +F +
Sbjct: 128 LLVTGGIITVVIYYGGDTGFEE-KEKVLEFLKGVDQKKFIV 167
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 Length = 275 | Back alignment and structure |
|---|
Score = 55.9 bits (134), Expect = 8e-09
Identities = 18/92 (19%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Query: 324 AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLH 383
A ++ +PG I++ G + Y+ L+G+G + ++ ++ L+ +
Sbjct: 99 ASYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEF 158
Query: 384 QVNSVIRTIHADLRTFADNSTVKCDKVLLDAP 415
+RT +D+ F + D V+ D P
Sbjct: 159 YDIGNVRTSRSDIADFISDQMY--DAVIADIP 188
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 Length = 396 | Back alignment and structure |
|---|
Score = 55.6 bits (134), Expect = 2e-08
Identities = 38/187 (20%), Positives = 68/187 (36%), Gaps = 23/187 (12%)
Query: 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH 393
QPG ++D GG ++ A ++G V ID + + E AKL+ V ++ I
Sbjct: 216 QPGDRVLDVFTYTGGFAIHAA--IAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIV 273
Query: 394 AD----LRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLD 449
+ K D V+LD P + + +D++ +
Sbjct: 274 GSAFEEMEKLQKKGE-KFDIVVLDPP-------------AFVQHEKDLKAGLRAYFNVNF 319
Query: 450 AASLLVKPGGVLVYSTCS--IDPEENEERV-EAFLLRHPEFSIDPADGLVPSDFVTKHGF 506
A LVK GG+LV +CS +D + ++ + A + D
Sbjct: 320 AGLNLVKDGGILVTCSCSQHVDLQMFKDMIIAAGAKAGKFLKMLEPYRTQAPDHPILMAS 379
Query: 507 FFSDPIK 513
++ +K
Sbjct: 380 KDTEYLK 386
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 2e-07
Identities = 28/149 (18%), Positives = 50/149 (33%), Gaps = 30/149 (20%)
Query: 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH 393
I D GG+T+ +A ++GQ V +D G + I N A+ + + + I
Sbjct: 45 TEKSLIADIGCGTGGQTMVLAGHVTGQ--VTGLDFLSGFIDIFNRNARQSGLQNRVTGIV 102
Query: 394 ADLRT--FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAA 451
+ F + D + + + + +R W +
Sbjct: 103 GSMDDLPFRNEE---LDLIW--SEGAIYNIGFERGLNEWRK------------------- 138
Query: 452 SLLVKPGGVLVYSTCSIDPEENEERVEAF 480
+K GG L S CS +E + F
Sbjct: 139 --YLKKGGYLAVSECSWFTDERPAEINDF 165
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} Length = 259 | Back alignment and structure |
|---|
Score = 50.6 bits (121), Expect = 4e-07
Identities = 28/162 (17%), Positives = 57/162 (35%), Gaps = 13/162 (8%)
Query: 326 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQV 385
L P I+D C+ G L +++ + + ++I + + + +Q+
Sbjct: 40 LAKFSYLPIRKGKIIDLCSGNGIIPLLLSTRTKAK--IVGVEIQERLADMAKRSVAYNQL 97
Query: 386 NSVIRTIHADLRTFADN-STVKCDKVLLDAPCSGLGVLSKRA--DLRWNRRLEDMEELKI 442
I I DL+ D + D V + P S + + R E M L
Sbjct: 98 EDQIEIIEYDLKKITDLIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTL-- 155
Query: 443 LQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRH 484
++ + A+ L+K GG + E + + ++
Sbjct: 156 --EDTIRVAASLLKQGGKA----NFVHRPERLLDIIDIMRKY 191
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 49.9 bits (119), Expect = 7e-07
Identities = 28/152 (18%), Positives = 50/152 (32%), Gaps = 30/152 (19%)
Query: 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH 393
I D GG+TL++A + GQ + ID+ + I NE A ++ I
Sbjct: 45 TDDAKIADIGCGTGGQTLFLADYVKGQ--ITGIDLFPDFIEIFNENAVKANCADRVKGIT 102
Query: 394 ADLRT--FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAA 451
+ F + D + + + + +R W++
Sbjct: 103 GSMDNLPFQNEE---LDLIW--SEGAIYNIGFERGMNEWSK------------------- 138
Query: 452 SLLVKPGGVLVYSTCSIDPEENEERVEAFLLR 483
+K GG + S S E +E F +
Sbjct: 139 --YLKKGGFIAVSEASWFTSERPAEIEDFWMD 168
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} SCOP: c.66.1.47 PDB: 3k6r_A 3a25_A* 3a26_A* Length = 278 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 2e-06
Identities = 27/155 (17%), Positives = 52/155 (33%), Gaps = 33/155 (21%)
Query: 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH 393
+P + +VD A G +L +A + V AI+ + + L E L++V + +
Sbjct: 124 KPDELVVDMFAGIGHLSLPIAVYGKAK--VIAIEKDPYTFKFLVENIHLNKVEDRMSAYN 181
Query: 394 ADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASL 453
D R F + D++L+ E + A
Sbjct: 182 MDNRDFPGEN--IADRILMGYVVRT--------------------------HEFIPKALS 213
Query: 454 LVKPGGVL-VYSTCSID--PEENEERVEAFLLRHP 485
+ K G ++ ++T P E E + +
Sbjct: 214 IAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYG 248
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} Length = 178 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 6e-06
Identities = 21/159 (13%), Positives = 49/159 (30%), Gaps = 31/159 (19%)
Query: 326 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQV 385
L ++ + P+P +++ D G + + Q +I++ R + A V
Sbjct: 16 LAISALAPKPHETLWDIGGGSGSIAIEWL-RSTPQTTAVCFEISEERRERILSNAINLGV 74
Query: 386 NSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQD 445
+ + D+ D + + +
Sbjct: 75 SDR-IAVQQGAPRAFDDVPDNPDVIFIGGGLT--------------------------AP 107
Query: 446 ELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRH 484
+ AA + GG LV + ++ E+E+ + A +
Sbjct: 108 GVFAAAWKRLPVGGRLVANAVTV---ESEQMLWALRKQF 143
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 6e-06
Identities = 16/88 (18%), Positives = 36/88 (40%), Gaps = 6/88 (6%)
Query: 327 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN 386
V+ + G +++D G Y++ + +G VYAID+ + + E +
Sbjct: 29 VLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLK 88
Query: 387 SVIRTIHADLRT--FADNSTVKCDKVLL 412
+V + ++ DN+ D + +
Sbjct: 89 NV-EVLKSEENKIPLPDNT---VDFIFM 112
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} Length = 233 | Back alignment and structure |
|---|
Score = 46.2 bits (109), Expect = 9e-06
Identities = 28/183 (15%), Positives = 50/183 (27%), Gaps = 36/183 (19%)
Query: 328 VAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS 387
+ + + G I+ A G +M+ + +G +Y ++ +R L +
Sbjct: 70 LIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDR---R 126
Query: 388 VIRTIHADLRTFADNSTV--KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQD 445
I I D R + D + D
Sbjct: 127 NIFPILGDARFPEKYRHLVEGVDGLYADVAQPE------------------------QAA 162
Query: 446 ELLDAASLLVKPGGVLVYS--TCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTK 503
++ A ++ GG ++ + SID V E GL D V
Sbjct: 163 IVVRNARFFLRDGGYMLMAIKARSIDVTTEPSEV-----YKREIKTLMDGGLEIKDVVHL 217
Query: 504 HGF 506
F
Sbjct: 218 DPF 220
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} Length = 393 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 2e-05
Identities = 30/142 (21%), Positives = 51/142 (35%), Gaps = 24/142 (16%)
Query: 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA 394
PG+ ++D + GG L A A+D + L +L++ A + + H
Sbjct: 214 PGERVLDVYSYVGGFALRAAR---KGAYALAVDKDLEALGVLDQAALRLGLR--VDIRHG 268
Query: 395 DLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQD--ELLDAAS 452
+ VLLD P L KR + + + +L+ A
Sbjct: 269 EALPTLRGLEGPFHHVLLDPP-----TLVKRPEELPA----------MKRHLVDLVREAL 313
Query: 453 LLVKPGGVLVYSTCS--IDPEE 472
L+ G L S+CS + E+
Sbjct: 314 RLLAEEGFLWLSSCSYHLRLED 335
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} Length = 258 | Back alignment and structure |
|---|
Score = 45.4 bits (107), Expect = 2e-05
Identities = 22/104 (21%), Positives = 39/104 (37%), Gaps = 1/104 (0%)
Query: 312 LKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKG 371
+K + A +V ++D PG +++ GG TL++A + +GLV + +
Sbjct: 73 MKRSATPTYPKDASAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPH 132
Query: 372 RLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAP 415
L + +R L A+ D V LD
Sbjct: 133 HLAQAERNVRAFWQVENVRFHLGKLEE-AELEEAAYDGVALDLM 175
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A Length = 230 | Back alignment and structure |
|---|
Score = 45.1 bits (106), Expect = 2e-05
Identities = 33/185 (17%), Positives = 63/185 (34%), Gaps = 37/185 (20%)
Query: 331 VDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIR 390
+ + I+ A+ G ++A ++ +G+VYAI+ +R L + + N I
Sbjct: 70 MPIKRDSKILYLGASAGTTPSHVA-DIADKGIVYAIEYAPRIMRELLDACA-EREN--II 125
Query: 391 TIHADLRTFADNSTV--KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELL 448
I D + + + K D + D + L+
Sbjct: 126 PILGDANKPQEYANIVEKVDVIYEDVAQPNQA------------------------EILI 161
Query: 449 DAASLLVKPGGVLVYS--TCSIDPEENEERV---EAFLLRHPEFSIDPADGLVPSDFVTK 503
A +K GG + + SID ++ + + + +L F I + P F
Sbjct: 162 KNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEILEAGGFKIVDEVDIEP--FEKD 219
Query: 504 HGFFF 508
H F
Sbjct: 220 HVMFV 224
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 44.3 bits (104), Expect = 3e-05
Identities = 33/188 (17%), Positives = 55/188 (29%), Gaps = 36/188 (19%)
Query: 328 VAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS 387
V + +PG ++ AA G +++ + GLVYA++ + R L AK +
Sbjct: 70 VDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR---T 126
Query: 388 VIRTIHADLRTFADNSTV--KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQD 445
I + D R + D + D
Sbjct: 127 NIIPVIEDARHPHKYRMLIAMVDVIFADVAQPDQT------------------------R 162
Query: 446 ELLDAASLLVKPGGVLVYS--TCSIDPEENEERV---EAFLLRHPEFSIDPADGLVPSDF 500
+ A ++ GG V S ID + E V E ++ L P +
Sbjct: 163 IVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMKPQEQLTLEP--Y 220
Query: 501 VTKHGFFF 508
H
Sbjct: 221 ERDHAVVV 228
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 Length = 207 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 3e-05
Identities = 25/161 (15%), Positives = 54/161 (33%), Gaps = 24/161 (14%)
Query: 336 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHAD 395
G+ + D A G + G V ++++K + +L E + + D
Sbjct: 50 GKVVADLGAGTGVLSYGALLL--GAKEVICVEVDKEAVDVLIENLGEFKGK--FKVFIGD 105
Query: 396 LRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKIL----QDELLDAA 451
+ F + D V+++ P G K AD + + ++ ++ + E+
Sbjct: 106 VSEFNS----RVDIVIMNPPF---GSQRKHADRPFLLKAFEISDVVYSIHLAKPEVRRFI 158
Query: 452 SLLVKPGGVLVYSTCSIDPE---------ENEERVEAFLLR 483
G +V + E + ER+ + R
Sbjct: 159 EKFSWEHGFVVTHRLTTKIEIPLQFFFHRKKLERITVDIYR 199
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* Length = 382 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 4e-05
Identities = 37/168 (22%), Positives = 64/168 (38%), Gaps = 25/168 (14%)
Query: 329 AVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSV 388
++ G+ +D + GG L+ G V A+D + LR E A+L+ + +V
Sbjct: 203 LYMERFRGERALDVFSYAGGFALH---LALGFREVVAVDSSAEALRRAEENARLNGLGNV 259
Query: 389 IRTIHAD----LRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQ 444
R + A+ LR + D V+LD P +K + +
Sbjct: 260 -RVLEANAFDLLRRLEKEGE-RFDLVVLDPP-----AFAKGKKDVERA-------YRAYK 305
Query: 445 DELLDAASLLVKPGGVLVYSTCS--IDPEENEERV-EAFLLRHPEFSI 489
+ + A L+K GG+L ++CS + V EA H +
Sbjct: 306 E-VNLRAIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQDAHRLLRV 352
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* Length = 180 | Back alignment and structure |
|---|
Score = 43.2 bits (103), Expect = 5e-05
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINK 370
+PG ++VD AAPGG + Y+ + + G+G + A D+
Sbjct: 21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP 57
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* Length = 241 | Back alignment and structure |
|---|
Score = 43.5 bits (102), Expect = 7e-05
Identities = 23/96 (23%), Positives = 35/96 (36%), Gaps = 5/96 (5%)
Query: 330 VVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVI 389
V +VD GG T+ A V AIDI+ ++ + A+++ + I
Sbjct: 73 VSQSFKCDVVVDAFCGVGGNTIQFALTGM---RVIAIDIDPVKIALARNNAEVYGIADKI 129
Query: 390 RTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKR 425
I D A +K D V L P G +
Sbjct: 130 EFICGDFLLLASF--LKADVVFLSPPWGGPDYATAE 163
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} Length = 204 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 1e-04
Identities = 23/159 (14%), Positives = 48/159 (30%), Gaps = 34/159 (21%)
Query: 326 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQV 385
L +A + P+ G+ + D G ++ G I+ R+ + + + +
Sbjct: 46 LTLAALAPRRGELLWDIGGGSGSVSVEWCLA---GGRAITIEPRADRIENIQKNIDTYGL 102
Query: 386 NSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQD 445
+ +R + A + +A G G
Sbjct: 103 SPRMRAVQGT----APAALADLPLP--EAVFIGGGGS----------------------Q 134
Query: 446 ELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRH 484
L D + PG +V + ++ E+E + RH
Sbjct: 135 ALYDRLWEWLAPGTRIVANAVTL---ESETLLTQLHARH 170
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 2e-04
Identities = 16/80 (20%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 326 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQV 385
L+ PG +++ G +T+ +A + + +IDI+ L E + + +
Sbjct: 28 LLHHDTVYPPGAKVLEAGCGIGAQTVILAK-NNPDAEITSIDISPESLEKARENTEKNGI 86
Query: 386 NSVIRTIHADLRT--FADNS 403
+V + + A++ + F D+S
Sbjct: 87 KNV-KFLQANIFSLPFEDSS 105
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A Length = 227 | Back alignment and structure |
|---|
Score = 41.6 bits (97), Expect = 3e-04
Identities = 32/182 (17%), Positives = 62/182 (34%), Gaps = 31/182 (17%)
Query: 331 VDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIR 390
+PG+S++ A G +++ + +G ++ I+ + LR L + + N I
Sbjct: 69 FPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVE-ERRN--IV 125
Query: 391 TIHADLRTFADNSTV--KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELL 448
I D + + K D + D L+
Sbjct: 126 PILGDATKPEEYRALVPKVDVIFEDVAQPT------------------------QAKILI 161
Query: 449 DAASLLVKPGGVLVYS--TCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGF 506
D A + +K GG + + + SID + E+V + R + + L + H
Sbjct: 162 DNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVERELSEYFEVIERLNLEPYEKDHAL 221
Query: 507 FF 508
F
Sbjct: 222 FV 223
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} Length = 396 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 3e-04
Identities = 26/139 (18%), Positives = 56/139 (40%), Gaps = 25/139 (17%)
Query: 336 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN-SVIRTIHA 394
+ +++C + GG + + G V ++D ++ L I + +L++++ S +
Sbjct: 221 NKRVLNCFSYTGGFAVSAL--MGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRD 278
Query: 395 D----LRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQD--ELL 448
D LRT+ D K D +++D P + + ++
Sbjct: 279 DVFKLLRTYRDRGE-KFDVIVMDPP-----KFVENKSQLMG----------ACRGYKDIN 322
Query: 449 DAASLLVKPGGVLVYSTCS 467
A L+ GG+L+ +CS
Sbjct: 323 MLAIQLLNEGGILLTFSCS 341
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* Length = 192 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 3e-04
Identities = 29/159 (18%), Positives = 49/159 (30%), Gaps = 32/159 (20%)
Query: 326 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQV 385
L++ + +P VD GG TL +A + VYAID N + + H +
Sbjct: 24 LIMCLAEPGKNDVAVDVGCGTGGVTLELA-GRVRR--VYAIDRNPEAISTTEMNLQRHGL 80
Query: 386 NSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQD 445
+ + D A D + G G +
Sbjct: 81 GDNVTLMEGDA-PEALCKIPDIDIAV----VGGSGGELQ--------------------- 114
Query: 446 ELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRH 484
E+L +KPGG ++ + + E + L
Sbjct: 115 EILRIIKDKLKPGGRIIVTAILL---ETKFEAMECLRDL 150
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* Length = 385 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 4e-04
Identities = 15/154 (9%), Positives = 60/154 (38%), Gaps = 27/154 (17%)
Query: 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN-SVIRTIH 393
G+++++ + ++ A + G ++D+ K + + + ++ + + +
Sbjct: 212 AGKTVLNLFSYTAAFSVAAA--MGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVV 269
Query: 394 AD----LRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQD--EL 447
D + + D +++D P ++ ++ + +D +L
Sbjct: 270 MDVFDYFKYARRHHL-TYDIIIIDPP-----SFARNKKEVFS----------VSKDYHKL 313
Query: 448 LDAASLLVKPGGVLVYSTCS--IDPEENEERVEA 479
+ ++ G+++ ST + + + ++++E
Sbjct: 314 IRQGLEILSENGLIIASTNAANMTVSQFKKQIEK 347
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243 | Back alignment and structure |
|---|
Score = 40.5 bits (95), Expect = 6e-04
Identities = 32/157 (20%), Positives = 55/157 (35%), Gaps = 28/157 (17%)
Query: 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGL-VYAIDINKGRLRILNETAKLHQVNSVIRTI 392
+PG+ I D G TL +A V +D+++ L I E A + +
Sbjct: 32 EPGKRIADIGCGTGTATLLLA-----DHYEVTGVDLSEEMLEIAQEKAMETNRH--VDFW 84
Query: 393 HADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAAS 452
D+R V D + + C L L AD++ + D+A+
Sbjct: 85 VQDMRELELPEPV--DAITI--LCDSLNYLQTEADVK----------------QTFDSAA 124
Query: 453 LLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSI 489
L+ GG L++ S E + + + S
Sbjct: 125 RLLTDGGKLLFDVHSPYKMETLFNGKTYATHAEQSSY 161
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} Length = 272 | Back alignment and structure |
|---|
Score = 40.8 bits (95), Expect = 6e-04
Identities = 36/154 (23%), Positives = 57/154 (37%), Gaps = 33/154 (21%)
Query: 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH 393
+ +VD A G T+ +A S LVYAI+ N L E KL+++N+VI I
Sbjct: 118 NENEVVVDMFAGIGYFTIPLAKY-SKPKLVYAIEKNPTAYHYLCENIKLNKLNNVI-PIL 175
Query: 394 ADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASL 453
AD R D+V++ + LD
Sbjct: 176 ADNRDVELKD--VADRVIMGYVHKT--------------------------HKFLDKTFE 207
Query: 454 LVKPGGVL-VYSTC--SIDPEENEERVEAFLLRH 484
+K GV+ + T I E ER++ + ++
Sbjct: 208 FLKDRGVIHYHETVAEKIMYERPIERLKFYAEKN 241
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 40.0 bits (93), Expect = 7e-04
Identities = 28/161 (17%), Positives = 52/161 (32%), Gaps = 22/161 (13%)
Query: 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH 393
+P I+ + + G V ++D + ++ + +R
Sbjct: 41 RPEDRILVLGCGNSALSYELFL--GGFPNVTSVDYSSV---VVAAMQACYAHVPQLRWET 95
Query: 394 ADLR--TFADNS-TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDA 450
D+R F S V +K LDA L W E + + D++L
Sbjct: 96 MDVRKLDFPSASFDVVLEKGTLDA-------LLAGERDPWTVSSEGVHTV----DQVLSE 144
Query: 451 ASLLVKPGGVLVYSTCSIDPEEN---EERVEAFLLRHPEFS 488
S ++ PGG + T + + + LRH +
Sbjct: 145 VSRVLVPGGRFISMTSAAPHFRTRHYAQAYYGWSLRHATYG 185
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 528 | |||
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 100.0 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 100.0 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 100.0 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 100.0 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 100.0 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 100.0 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 100.0 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 100.0 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 100.0 | |
| 1tzv_A | 142 | NUSB protein, N utilization substance protein B ho | 99.96 | |
| 3d3b_A | 141 | Protein NUSB, N utilization substance protein B; N | 99.96 | |
| 3r2d_A | 149 | Protein NUSB, N utilization substance protein B; c | 99.96 | |
| 1eyv_A | 156 | NUSB protein, N-utilizing substance protein B homo | 99.95 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.79 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.74 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.74 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.72 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.72 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.72 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.7 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.7 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.7 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.69 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.69 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.68 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.67 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.66 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.65 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.65 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.65 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.65 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.65 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.63 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.63 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.62 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.61 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.61 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 99.61 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.6 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.6 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.6 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.6 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.6 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.6 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.59 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.59 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.58 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.57 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.57 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 99.55 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.55 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 99.54 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.54 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.53 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.53 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.52 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.52 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.52 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.52 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.52 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.52 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.51 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.5 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.49 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.49 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.49 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.48 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.48 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.47 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 99.47 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.46 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.46 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.45 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.45 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.44 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.43 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.43 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.43 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.42 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.42 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.42 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.42 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.42 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.42 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.42 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.41 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.41 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.41 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.4 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.4 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.4 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.4 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.39 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.38 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.37 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 99.37 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.37 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.37 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.37 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.37 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.37 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.36 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.36 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 99.35 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.35 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.35 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.35 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.34 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.34 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.33 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.33 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.33 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.33 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.33 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.33 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.32 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.32 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.32 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.32 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.32 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 99.31 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.31 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 99.31 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.31 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.31 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.31 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.3 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 99.3 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 99.3 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.3 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 99.29 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.29 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.29 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 99.29 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.28 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.28 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 99.28 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.28 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.27 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.27 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 99.26 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.26 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.25 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.25 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.25 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 99.25 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.25 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.25 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.24 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.24 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.24 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.23 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.23 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 99.23 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.23 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 99.23 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.23 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.23 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.22 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.22 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.21 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.2 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.2 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.2 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.2 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.2 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.2 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.2 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.2 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.19 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 99.19 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.19 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.18 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.18 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.18 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.18 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.18 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.17 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.17 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.17 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.16 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.16 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.16 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.16 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 99.15 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.15 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.15 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.14 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.14 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.14 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.13 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.13 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 99.13 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.12 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.12 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.12 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.12 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.11 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.11 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.11 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.11 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.11 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.11 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.1 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.1 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.09 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.09 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.09 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.09 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.08 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.08 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 99.08 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.08 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 99.08 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.07 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.06 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.06 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 99.06 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.06 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.06 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.05 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.04 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 99.03 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.02 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.02 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.02 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 99.02 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.02 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.01 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.01 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.01 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.01 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.0 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.0 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.0 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.0 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 98.99 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 98.99 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 98.99 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.98 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 98.97 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 98.97 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 98.97 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 98.96 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 98.96 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 98.95 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 98.94 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 98.94 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 98.94 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 98.93 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 98.91 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 98.91 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 98.9 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.87 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.85 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.85 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 98.84 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 98.83 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 98.82 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 98.81 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 98.81 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 98.81 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 98.79 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 98.77 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 98.74 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 98.72 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.7 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 98.7 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.69 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 98.67 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 98.67 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 98.66 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.64 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 98.62 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 98.61 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.6 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 98.58 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 98.57 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 98.54 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.53 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 98.53 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.51 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 98.46 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.46 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 98.45 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 98.43 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 98.4 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.36 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.33 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 98.32 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 98.26 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 98.22 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 98.19 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 98.19 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 98.16 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 98.13 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 98.09 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 98.09 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 98.02 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 97.94 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 97.82 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 97.74 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 97.71 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 97.35 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 97.12 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 97.03 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 97.01 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 97.01 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 96.93 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 96.77 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 96.7 | |
| 3me5_A | 482 | Cytosine-specific methyltransferase; structural ge | 96.65 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 96.56 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 96.54 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 96.48 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 96.43 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 96.37 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 96.23 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 96.23 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 96.15 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 96.14 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 96.11 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 96.02 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 95.98 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 95.93 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 95.86 | |
| 4dkj_A | 403 | Cytosine-specific methyltransferase; CG-specificit | 95.86 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 95.84 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 95.66 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 95.65 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 95.64 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 95.62 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 95.52 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 95.49 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 95.48 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 95.47 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 95.39 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 95.32 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 95.3 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 95.29 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 95.27 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 95.26 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 95.26 | |
| 3swr_A | 1002 | DNA (cytosine-5)-methyltransferase 1; epigenetics, | 95.15 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 95.1 | |
| 4ft4_B | 784 | DNA (cytosine-5)-methyltransferase 1; chromodomain | 95.09 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 95.07 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 95.03 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 95.01 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 94.94 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 94.87 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 94.76 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 94.74 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 94.69 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 94.65 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 94.52 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 94.43 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 94.25 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 94.21 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 94.16 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 94.16 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 93.96 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 93.92 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 93.87 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 93.84 | |
| 3av4_A | 1330 | DNA (cytosine-5)-methyltransferase 1; CXXC-type zi | 93.79 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 93.78 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 93.74 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 93.65 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 93.61 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 93.39 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 93.34 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 93.34 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 93.31 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 93.28 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 93.0 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 92.79 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 92.67 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 92.64 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 92.57 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 92.55 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 92.37 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 92.33 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 92.3 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 92.28 | |
| 3rku_A | 287 | Oxidoreductase YMR226C; substrate fingerprint, sho | 92.15 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 92.12 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 92.1 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 92.06 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 92.05 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 92.03 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 91.97 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 91.82 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 91.81 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 91.8 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 91.79 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 91.79 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 91.77 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 91.61 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 91.58 | |
| 2hwk_A | 320 | Helicase NSP2; rossman fold, alpha/beta/alpha, mul | 91.51 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 91.26 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 91.25 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 91.2 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 91.19 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 91.14 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 91.08 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 91.05 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 91.03 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 90.94 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 90.76 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 90.75 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 90.73 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 90.71 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 90.67 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 90.64 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 90.63 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 90.62 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 90.58 | |
| 3pgx_A | 280 | Carveol dehydrogenase; structural genomics, seattl | 90.5 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 90.48 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 90.4 | |
| 3rih_A | 293 | Short chain dehydrogenase or reductase; structural | 90.36 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 90.32 | |
| 4ibo_A | 271 | Gluconate dehydrogenase; enzyme function initiativ | 90.26 | |
| 3ksu_A | 262 | 3-oxoacyl-acyl carrier protein reductase; structur | 90.18 | |
| 1zsy_A | 357 | Mitochondrial 2-enoyl thioester reductase; medium- | 90.15 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 90.13 | |
| 3oec_A | 317 | Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; | 90.12 | |
| 4a27_A | 349 | Synaptic vesicle membrane protein VAT-1 homolog-L; | 90.08 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 90.06 | |
| 3u5t_A | 267 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 90.06 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 90.03 | |
| 1gu7_A | 364 | Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s | 90.02 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 89.85 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 89.67 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 89.65 | |
| 1geg_A | 256 | Acetoin reductase; SDR family, oxidoreductase; HET | 89.65 | |
| 1g0o_A | 283 | Trihydroxynaphthalene reductase; protein-NADPH-act | 89.64 | |
| 3sc4_A | 285 | Short chain dehydrogenase (A0QTM2 homolog); ssgcid | 89.58 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 89.57 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 89.52 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 89.4 | |
| 3oid_A | 258 | Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa | 89.3 | |
| 3tsc_A | 277 | Putative oxidoreductase; structural genomics, seat | 89.27 | |
| 1vl8_A | 267 | Gluconate 5-dehydrogenase; TM0441, structural geno | 89.16 | |
| 3e9n_A | 245 | Putative short-chain dehydrogenase/reductase; stru | 89.13 | |
| 2p91_A | 285 | Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD | 89.06 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 88.98 | |
| 2pd4_A | 275 | Enoyl-[acyl-carrier-protein] reductase [NADH]; ant | 88.95 | |
| 3t7c_A | 299 | Carveol dehydrogenase; structural genomics, seattl | 88.93 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 88.91 | |
| 1ja9_A | 274 | 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p | 88.88 | |
| 2rhc_B | 277 | Actinorhodin polyketide ketoreductase; oxidoreduct | 88.86 | |
| 3uve_A | 286 | Carveol dehydrogenase ((+)-trans-carveol dehydrog; | 88.86 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 88.86 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 88.84 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 88.81 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 88.73 | |
| 3cxt_A | 291 | Dehydrogenase with different specificities; rossma | 88.72 | |
| 4imr_A | 275 | 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor | 88.71 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 88.61 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 88.54 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 88.26 | |
| 3s55_A | 281 | Putative short-chain dehydrogenase/reductase; stru | 88.18 | |
| 1zem_A | 262 | Xylitol dehydrogenase; rossmann fold, dinucleotide | 88.1 | |
| 3osu_A | 246 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 88.05 | |
| 2h7i_A | 269 | Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi | 88.04 | |
| 1xq1_A | 266 | Putative tropinone reducatse; structural genomics, | 87.98 | |
| 1xhl_A | 297 | Short-chain dehydrogenase/reductase family member | 87.93 | |
| 4dmm_A | 269 | 3-oxoacyl-[acyl-carrier-protein] reductase; rossma | 87.92 | |
| 1w6u_A | 302 | 2,4-dienoyl-COA reductase, mitochondrial precursor | 87.85 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 87.81 | |
| 3pi7_A | 349 | NADH oxidoreductase; groes-like fold, NAD(P)-bindi | 87.8 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 87.79 | |
| 2c07_A | 285 | 3-oxoacyl-(acyl-carrier protein) reductase; oxidor | 87.67 | |
| 1gee_A | 261 | Glucose 1-dehydrogenase; short-chain dehydrogenase | 87.66 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 87.61 | |
| 1iy8_A | 267 | Levodione reductase; oxidoreductase; HET: NAD; 1.6 | 87.61 | |
| 2a4k_A | 263 | 3-oxoacyl-[acyl carrier protein] reductase; reduct | 87.53 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 87.43 | |
| 4dry_A | 281 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 87.38 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 87.29 | |
| 3tox_A | 280 | Short chain dehydrogenase; structural genomics, PS | 87.03 | |
| 2bd0_A | 244 | Sepiapterin reductase; oxidoreductase; HET: NAP BI | 86.89 | |
| 1xkq_A | 280 | Short-chain reductase family member (5D234); parra | 86.64 | |
| 2uvd_A | 246 | 3-oxoacyl-(acyl-carrier-protein) reductase; beta-k | 86.63 | |
| 2wyu_A | 261 | Enoyl-[acyl carrier protein] reductase; oxidoreduc | 86.59 | |
| 3rwb_A | 247 | TPLDH, pyridoxal 4-dehydrogenase; short chain dehy | 86.46 | |
| 4fc7_A | 277 | Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman | 86.31 | |
| 1yxm_A | 303 | Pecra, peroxisomal trans 2-enoyl COA reductase; pe | 86.3 | |
| 3v2h_A | 281 | D-beta-hydroxybutyrate dehydrogenase; structural g | 86.23 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 86.11 | |
| 3f9i_A | 249 | 3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto | 86.06 | |
| 1h2b_A | 359 | Alcohol dehydrogenase; oxidoreductase, archaea, hy | 85.87 | |
| 4iin_A | 271 | 3-ketoacyl-acyl carrier protein reductase (FABG); | 85.85 | |
| 2b4q_A | 276 | Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier | 85.84 | |
| 2zat_A | 260 | Dehydrogenase/reductase SDR family member 4; alpha | 85.69 | |
| 1sny_A | 267 | Sniffer CG10964-PA; alpha and beta protein, rossma | 85.68 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 85.64 |
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-77 Score=641.31 Aligned_cols=432 Identities=29% Similarity=0.432 Sum_probs=384.6
Q ss_pred ChHHHHHHHHHHHHHhCCCchHHHhhcCCCCCCCccchhhhhcccCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009708 58 SPHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDD-RDLRLVTDIVGGTIRWRRYLDHLICLL 136 (528)
Q Consensus 58 ~~aR~~A~~~Ly~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~lv~gv~~~~~~LD~~i~~~ 136 (528)
+++|+.|+|+||+++.++.+++.++... ++...+++ .|++|+++||+||+|++..||++|.++
T Consensus 11 ~~~R~~A~~~L~~v~~~~~~~~~~l~~~----------------~~~~~l~~~~dr~~~~~lv~gvlr~~~~ld~~i~~~ 74 (450)
T 2yxl_A 11 PPKGIRAIIEAIRLGEIIKPSQYAKREA----------------FKKHDVEEAWLNRVLTMIFYDIMKKQGLIDKVIKEI 74 (450)
T ss_dssp CHHHHHHHHHHHHHTTTSSSTHHHHHHH----------------HHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCCcHHHHHHHH----------------HHhccCCcHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Confidence 4799999999999988888787755431 11224677 999999999999999999999999999
Q ss_pred ccCCCCCCcccHHHHHHHHHHHHHHHhcCCCCchhHH----HHHHHHHHhcCCCchhhHHHHHHHHHhhcCCCCCCCCcC
Q 009708 137 CHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAVVD----ENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKL 212 (528)
Q Consensus 137 l~~~~~~~~l~~~~~~iLrlg~~el~~~~~p~~~~in----EaV~lak~~~~~~~~~fVN~VL~~~~r~~~~~~~~~~~~ 212 (528)
++ ++++++++++++|||+|+|||+| ++|++++|| |+|++||+++++..++||||||+++++.+.. +.
T Consensus 75 ~~--~~~~~~~~~~~~iLrla~yell~-~ip~~~ain~~~~eaVelak~~~~~~~~~fvNgvL~~~~r~~~~-----~~- 145 (450)
T 2yxl_A 75 VG--VTPLILDPWLRAALRVAVDIALF-HDPSSQTIKNLRWKASDFISSRTHPYVGMYFWDLLDKIFEYKPN-----PK- 145 (450)
T ss_dssp HS--SCGGGSCHHHHHHHHHHHHHHHH-SCBCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTCCCC-----CC-
T ss_pred cc--CChhhcCHHHHHHHHHHHHHHhc-CCCchHHhccccHHHHHHHHhccccccccchHHHHHHHhhcccc-----cc-
Confidence 97 57899999999999999999999 999999999 9999999998888999999999999986311 10
Q ss_pred cCCcHHHHHHHHhhhcChHHHHHHHHHHhCHHHHHHHHHhcC-CCCCeEEEEcCCCCCCHHHHHHHHhhcCCCCCceecc
Q 009708 213 EGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNN-SDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSL 291 (528)
Q Consensus 213 ~~~~~~~~~~ls~~~s~P~w~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~rvn~~k~~~~~~~~~~L~~~~~~~~~~~~~ 291 (528)
+....++++||+|+|++++|.+.|| +++++++++++ ++||+++|||++| .+++++.+.|++.|+ .....+
T Consensus 146 -----~~~~~~~~~~~~P~w~~~~~~~~~g-~~~~~~~~a~~~~~~~~~~Rvn~~k-~~~~~~~~~L~~~g~--~~~~~~ 216 (450)
T 2yxl_A 146 -----NELEELEWKYLAPSWLIERVKGILG-DETEDFFRSVNKRHEWISIRVNTLK-ANVEEVIGELEEDGV--EVVRSE 216 (450)
T ss_dssp -----SHHHHHHHHHTSCHHHHHHHHHHHG-GGHHHHHHHHHCCCCEEEEEECTTT-CCHHHHHHHHHHTTC--CEEECS
T ss_pred -----chhhhhhhHhcCcHHHHHHHHHHhh-HHHHHHHHhcCCCCCCEEEEEcCCC-CCHHHHHHHHHhCCc--cceecC
Confidence 1246789999999999999999999 78999999999 9999999999999 799999999998665 445678
Q ss_pred cCCceEEeeCCccchhcccccccceeEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChH
Q 009708 292 HLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKG 371 (528)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~ 371 (528)
++++.+.+.... .+...+.|.+|.+++||.+|++++.++++++|++|||+|||+|++|+++++.+++.++|+|+|+++.
T Consensus 217 ~~~~~~~~~~~~-~~~~~~~~~~G~~~~qd~~s~l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~ 295 (450)
T 2yxl_A 217 RVPTILKIKGPY-NFDTSSAFNEGKIIVQEEASAVASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKM 295 (450)
T ss_dssp SCTTEEEEESCC-CTTSCHHHHTTSEEECCHHHHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHH
T ss_pred ccCceEEeCCCC-CcccCchhhCceEEecCchhHHHHHhcCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHH
Confidence 889998885432 4667889999999999999999999999999999999999999999999999876689999999999
Q ss_pred HHHHHHHHHHHcCCCccEEEEcCccccccccCC-CCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHH
Q 009708 372 RLRILNETAKLHQVNSVIRTIHADLRTFADNST-VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDA 450 (528)
Q Consensus 372 ~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~-~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~ 450 (528)
+++.+++|++++|+++ ++++++|+..+..... ++||+|++||||||+|+++++|+++|.+++.++..+..+|.++|.+
T Consensus 296 ~l~~~~~~~~~~g~~~-v~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~ 374 (450)
T 2yxl_A 296 RMKRLKDFVKRMGIKI-VKPLVKDARKAPEIIGEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLES 374 (450)
T ss_dssp HHHHHHHHHHHTTCCS-EEEECSCTTCCSSSSCSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCc-EEEEEcChhhcchhhccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999986 8999999988754332 6799999999999999999999999999999999999999999999
Q ss_pred HhccCcCCCEEEEEcCCCCchhhHHHHHHHHhhCCCceEecCCCCCCCccccCCceEEEcCCCCCCCceEEEEEEec
Q 009708 451 ASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLVRA 527 (528)
Q Consensus 451 a~~~LkpGG~LvysTcs~~~~Ene~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~~~dGff~a~l~k~ 527 (528)
+.++|||||+|||+|||++++||+++|.+|+++|++|+++++...+ ......|+++++||.+++||||+|+|+|+
T Consensus 375 a~~~LkpGG~lvy~tcs~~~~ene~~v~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~P~~~~~dGff~a~l~k~ 449 (450)
T 2yxl_A 375 AARLVKPGGRLLYTTCSIFKEENEKNIRWFLNVHPEFKLVPLKSPY--DPGFLEGTMRAWPHRHSTIGFFYALLEKS 449 (450)
T ss_dssp HHTTEEEEEEEEEEESCCCGGGTHHHHHHHHHHCSSCEECCCCSSS--EECSSTTCEEECHHHHSSCCEEEEEEECC
T ss_pred HHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHhCCCCEEeeccccc--ccccCCCeEEECCCCCCCCceEEEEEEEC
Confidence 9999999999999999999999999999999999999998875432 11245688999999999999999999985
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-75 Score=623.06 Aligned_cols=423 Identities=29% Similarity=0.415 Sum_probs=372.4
Q ss_pred hHHHHHHHHHHHHHhCCCchHHHhhcCCCCCCCccchhhhhcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 009708 59 PHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCH 138 (528)
Q Consensus 59 ~aR~~A~~~Ly~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lv~gv~~~~~~LD~~i~~~l~ 138 (528)
.+|+.|+|+||+++..+.+.+.++... ...+++.|++|+++||+||+||+..||++|.++++
T Consensus 6 ~aR~~A~~~L~~~~~~~~~~~~~l~~~------------------~~~~~~~dr~~~~~lv~gvlr~~~~ld~~i~~~~~ 67 (429)
T 1sqg_A 6 NLRSMAAQAVEQVVEQGQSLSNILPPL------------------QQKVSDKDKALLQELCFGVLRTLSQLDWLINKLMA 67 (429)
T ss_dssp CHHHHHHHHHHHHHHHCCCHHHHHHHH------------------HTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHH------------------HhhCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhcC
Confidence 489999999999988877777665431 12478899999999999999999999999999997
Q ss_pred CCCCCCcccHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCCchhhHHHHHHHHHhhcCCCCCCCCcCcCCcHH
Q 009708 139 DEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRA 218 (528)
Q Consensus 139 ~~~~~~~l~~~~~~iLrlg~~el~~~~~p~~~~inEaV~lak~~~~~~~~~fVN~VL~~~~r~~~~~~~~~~~~~~~~~~ 218 (528)
++++++++++++|||+|+|||+|+++|++++|||+|++||+|++..+++||||||+++++..+.. +. .
T Consensus 68 --~~~~~~~~~~~~iLrl~~yel~~~~~p~~~~ineaVelak~~~~~~~~~fvN~vL~~~~r~~~~~----~~------~ 135 (429)
T 1sqg_A 68 --RPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAIAIKRPQLKGLINGVLRQFQRQQEEL----LA------E 135 (429)
T ss_dssp --SCCCGGGHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHH----HH------H
T ss_pred --CChhhcCHHHHHHHHHHHHHHhhCCCCchHhhHHHHHHHHHhccccchhhHHHHHHHHHHhhhcc----cc------c
Confidence 57899999999999999999999999999999999999999998889999999999999864321 00 0
Q ss_pred HHHHHHhhhcChHHHHHHHHHHhCHHHHHHHHHhcCCCCCeEEEEcCCCCCCHHHHHHHHhhcCCCCCceecccCCceEE
Q 009708 219 QARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIR 298 (528)
Q Consensus 219 ~~~~ls~~~s~P~w~~~~~~~~~g~~~~~~~~~~~~~~~~~~~rvn~~k~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~ 298 (528)
....++ +||+|.|++++|.+.|| +++++++++++++||+++|||++| .+++++.+.|.+.|+ .....++.++.++
T Consensus 136 ~~~~~~-~~~~p~w~~~~~~~~~g-~~~~~~~~~~~~~~~~~~Rvn~~~-~~~~~~~~~l~~~g~--~~~~~~~~~~~~~ 210 (429)
T 1sqg_A 136 FNASDA-RYLHPSWLLKRLQKAYP-EQWQSIVEANNQRPPMWLRINRTH-HSRDSWLALLDEAGM--KGFPHADYPDAVR 210 (429)
T ss_dssp HTTSGG-GGCSCHHHHHHHHHHCT-TTHHHHHHHHTSCCCEEEEECTTT-CCHHHHHHHHHHTTC--CEECCTTCTTEEE
T ss_pred chhhhh-hhcCcHHHHHHHHHHhh-HHHHHHHHhCCCCCCeEEEEcCCC-CCHHHHHHHHHhCCC--ceeecCCCCCEEE
Confidence 011345 89999999999999999 678999999999999999999999 699999999998665 3456778888888
Q ss_pred eeCCccchhcccccccceeEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHH
Q 009708 299 VKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNE 378 (528)
Q Consensus 299 ~~~~~~~~~~~~~~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~ 378 (528)
+..+. .+...+.|.+|.+++||.++++++.++++++|++|||+|||||++|+++++.+++ ++|+|+|+++.+++.+++
T Consensus 211 ~~~~~-~~~~~~~~~~G~~~~qd~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~~~~~l~~~~~ 288 (429)
T 1sqg_A 211 LETPA-PVHALPGFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPE-AQVVAVDIDEQRLSRVYD 288 (429)
T ss_dssp ESSCC-CGGGSTTGGGTSEEECCHHHHTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTT-CEEEEEESSTTTHHHHHH
T ss_pred ECCCC-CcccChHHhCCCeEeeCHHHHHHHHHcCCCCcCeEEEECCCchHHHHHHHHHcCC-CEEEEECCCHHHHHHHHH
Confidence 86543 4667889999999999999999999999999999999999999999999998754 899999999999999999
Q ss_pred HHHHcCCCccEEEEcCcccccccc-CCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcC
Q 009708 379 TAKLHQVNSVIRTIHADLRTFADN-STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKP 457 (528)
Q Consensus 379 n~~~~g~~~~i~~~~~D~~~~~~~-~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~Lkp 457 (528)
|++++|+. ++++++|+..+... ..++||+|++||||||+|+++++|+++|.++..++..+..+|.++|+++.++|||
T Consensus 289 ~~~~~g~~--~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~Lkp 366 (429)
T 1sqg_A 289 NLKRLGMK--ATVKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKT 366 (429)
T ss_dssp HHHHTTCC--CEEEECCTTCTHHHHTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEE
T ss_pred HHHHcCCC--eEEEeCchhhchhhcccCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999985 68899999886532 2367999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEcCCCCchhhHHHHHHHHhhCCCceEecCCCCCCCccccCCceEEEcCCCCCCCceEEEEEEec
Q 009708 458 GGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLVRA 527 (528)
Q Consensus 458 GG~LvysTcs~~~~Ene~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~~~dGff~a~l~k~ 527 (528)
||+|||+|||++++||+++|.+|+.+|++|++++ . ......| ++++||.+++||||+|+|+|.
T Consensus 367 GG~lvystcs~~~~ene~~v~~~l~~~~~~~~~~-~-----~~~~~~~-~~~~P~~~~~dGff~a~l~k~ 429 (429)
T 1sqg_A 367 GGTLVYATCSVLPEENSLQIKAFLQRTADAELCE-T-----GTPEQPG-KQNLPGAEEGDGFFYAKLIKK 429 (429)
T ss_dssp EEEEEEEESCCCGGGTHHHHHHHHHHCTTCEECS-S-----BCSSSBS-EEECCCTTSCCSEEEEEEEC-
T ss_pred CCEEEEEECCCChhhHHHHHHHHHHhCCCCEEeC-C-----CCCCCCe-EEECCCCCCCCceEEEEEEEC
Confidence 9999999999999999999999999999999876 1 1122234 689999999999999999984
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-55 Score=448.42 Aligned_cols=303 Identities=28% Similarity=0.412 Sum_probs=260.9
Q ss_pred HHHHHHHhhhcChHHHHHHHHHHhCHHHHHHHHHhcCCCCCeEEEEcCCCCCCHHHHHHHHhhcCCCCCceecccCCceE
Q 009708 218 AQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFI 297 (528)
Q Consensus 218 ~~~~~ls~~~s~P~w~~~~~~~~~g~~~~~~~~~~~~~~~~~~~rvn~~k~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~ 297 (528)
+..++||++||||+||+++|.+.|| +++++++++++++||+++|||++| .+++++.+.|++.|+ ..+..+++++.+
T Consensus 5 ~~~~~l~~~~~~P~w~~~~~~~~~g-~~~~~~~~~~~~~~p~~~RvN~~k-~~~~~~~~~L~~~g~--~~~~~~~~~~~~ 80 (315)
T 1ixk_A 5 PSMLDKLLRLGYSKLFADRYFQLWG-ERAIRIAEAMEKPLPRCFRVNTLK-ISVQDLVKRLNKKGF--QFKRVPWAKEGF 80 (315)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHT-THHHHHHHHTTSCCCCEEEECTTT-SCHHHHHHHHHHTTC--EEEEETTEEEEE
T ss_pred cHHHHHHHHhCCcHHHHHHHHHHcc-HHHHHHHHHcCCCCCeEEEEeCCC-CCHHHHHHHHHhCCC--eeeECCCCCceE
Confidence 3577899999999999999999999 789999999999999999999999 799999999999665 345667788787
Q ss_pred EeeCCccchhcccccccceeEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHH
Q 009708 298 RVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILN 377 (528)
Q Consensus 298 ~~~~~~~~~~~~~~~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~ 377 (528)
.+..+...+...+.|.+|++++||.+|++++.++++++|++|||+|||+|++|+++++.+++.++|+|+|+++.+++.++
T Consensus 81 ~~~~~~~~~~~~~~~~~G~~~~qd~~s~l~~~~l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~ 160 (315)
T 1ixk_A 81 CLTREPFSITSTPEFLTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETR 160 (315)
T ss_dssp EEEECSSCGGGSHHHHTTSEEECCHHHHHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHH
T ss_pred EEeCCCCCcccChhHhcceEEEeCHHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHH
Confidence 77543224667889999999999999999999999999999999999999999999998877789999999999999999
Q ss_pred HHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcC
Q 009708 378 ETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKP 457 (528)
Q Consensus 378 ~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~Lkp 457 (528)
+|++++|+.+ ++++++|+..+.. ..++||+|++||||||+|+++++|+++|.++..++..+...|.++|+++.++|||
T Consensus 161 ~~~~~~g~~~-v~~~~~D~~~~~~-~~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~Lkp 238 (315)
T 1ixk_A 161 LNLSRLGVLN-VILFHSSSLHIGE-LNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKP 238 (315)
T ss_dssp HHHHHHTCCS-EEEESSCGGGGGG-GCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEE
T ss_pred HHHHHhCCCe-EEEEECChhhccc-ccccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999986 8999999988764 2467999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEcCCCCchhhHHHHHHHHhhCCCceEecCCCCCC--Ccc----c--cCCceEEEcCCCCCCCceEEEEEEec
Q 009708 458 GGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVP--SDF----V--TKHGFFFSDPIKHSLDGAFAARLVRA 527 (528)
Q Consensus 458 GG~LvysTcs~~~~Ene~~v~~~l~~~~~~~~~~~~~~~~--~~~----~--~~~g~~~~~P~~~~~dGff~a~l~k~ 527 (528)
||+|||+|||++++||+++|.+|++++ +|+++++....+ ..+ . ...+++|++||.+++||||+|+|+|.
T Consensus 239 GG~lv~stcs~~~~Ene~~v~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGfF~A~l~k~ 315 (315)
T 1ixk_A 239 GGILVYSTCSLEPEENEFVIQWALDNF-DVELLPLKYGEPALTNPFGIELSEEIKNARRLYPDVHETSGFFIAKIRKL 315 (315)
T ss_dssp EEEEEEEESCCCGGGTHHHHHHHHHHS-SEEEECCCSSEECCSSGGGCCCCGGGGGSEEECTTTSSSCSEEEEEEEEC
T ss_pred CCEEEEEeCCCChHHhHHHHHHHHhcC-CCEEecCCccccCcccccccccccccCCEEEECCCCCCcccEEEEEEEEC
Confidence 999999999999999999999999986 588877652110 011 0 11467999999999999999999984
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-54 Score=455.94 Aligned_cols=290 Identities=30% Similarity=0.397 Sum_probs=259.0
Q ss_pred cChHHHHHHHHHHhCHHHHHHHHHhcCCC-CCeEEEEcCCCCCCHHHHHHHHhhcCCCCCceecccCCceEEeeCCccch
Q 009708 228 SHPVWMVRRWTKYLGQEEAIKLMVWNNSD-PSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNV 306 (528)
Q Consensus 228 s~P~w~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~rvn~~k~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (528)
.+|+||+++|.+.||+ ++++++++++++ |+++||||++| ++++++.+.| |+ ..+..+++++.+++..+. .+
T Consensus 1 ~lP~w~~~~~~~~~g~-e~~~~l~a~~~~~~~~~lRvN~lk-~~~~~~~~~l---~~--~~~~~~~~~~g~~l~~~~-~~ 72 (464)
T 3m6w_A 1 MLPKAFLSRMAELLGE-EFPAFLKALTEGKRTYGLRVNTLK-LPPEAFQRIS---PW--PLRPIPWCQEGFYYPEEA-RP 72 (464)
T ss_dssp CCCHHHHHHHHHHHGG-GHHHHHHHHHTSCCCCEEEECTTT-CCHHHHHHHC---SS--CCEEETTEEEEEECCTTC-CC
T ss_pred CCcHHHHHHHHHHHHH-HHHHHHHHcCCCCCCeEEEEcCCC-CCHHHHHHHc---CC--CceecCCCCceEEECCCC-Cc
Confidence 3899999999999995 599999999999 99999999999 7999998776 23 345678888888876432 34
Q ss_pred hcccccccceeEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCC
Q 009708 307 IQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN 386 (528)
Q Consensus 307 ~~~~~~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~ 386 (528)
...+.|.+|.+++||++|++++.++++++|++|||+|||||++|+++|+++++.++|+|+|+|+.+++.+++|++++|+.
T Consensus 73 ~~~~~~~~G~~~vQd~ss~l~a~~L~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~ 152 (464)
T 3m6w_A 73 GPHPFFYAGLYYIQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP 152 (464)
T ss_dssp SSSHHHHTTSEEECCTTTHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC
T ss_pred ccChHHhCCeEEEECHHHHHHHHhcCcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe
Confidence 56788999999999999999999999999999999999999999999999887899999999999999999999999997
Q ss_pred ccEEEEcCccccccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcC
Q 009708 387 SVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466 (528)
Q Consensus 387 ~~i~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTc 466 (528)
+.++++|+..+.....++||+|++||||||+|+++++|+++|.++++++..+..+|.++|+.++++|||||+||||||
T Consensus 153 --v~~~~~Da~~l~~~~~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTC 230 (464)
T 3m6w_A 153 --LAVTQAPPRALAEAFGTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTC 230 (464)
T ss_dssp --CEEECSCHHHHHHHHCSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEES
T ss_pred --EEEEECCHHHhhhhccccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 789999998876433578999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhhHHHHHHHHhhCCCceEecCCCCCC-----Cccc----cCCceEEEcCCCCCCCceEEEEEEec
Q 009708 467 SIDPEENEERVEAFLLRHPEFSIDPADGLVP-----SDFV----TKHGFFFSDPIKHSLDGAFAARLVRA 527 (528)
Q Consensus 467 s~~~~Ene~~v~~~l~~~~~~~~~~~~~~~~-----~~~~----~~~g~~~~~P~~~~~dGff~a~l~k~ 527 (528)
|++++||+++|.+|+++||+|+++++..... ..+. ...++++++||.+++||||+|+|+|.
T Consensus 231 s~~~eEne~vv~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGfF~A~l~k~ 300 (464)
T 3m6w_A 231 TFAPEENEGVVAHFLKAHPEFRLEDARLHPLFAPGVPEWGEGNPELLKTARLWPHRLEGEGHFLARFRKE 300 (464)
T ss_dssp CCCGGGTHHHHHHHHHHCTTEEEECCCCSTTSEECCGGGTTTCGGGGGSEEECTTTSSSSCEEEEEEEEC
T ss_pred cCchhcCHHHHHHHHHHCCCcEEEecccccccccCcccccccccccCCeEEECCCCCCceeEEEEEEEEC
Confidence 9999999999999999999999998753211 0111 12468999999999999999999985
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-53 Score=458.42 Aligned_cols=298 Identities=26% Similarity=0.350 Sum_probs=258.7
Q ss_pred hhcChHHHHHHHHHHhCHH-HHHHHHHhcCCCCCeEEEEcCCCCCCHHHHHHHHhhcCCCCCceecccCCceEEeeCCcc
Q 009708 226 IYSHPVWMVRRWTKYLGQE-EAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQ 304 (528)
Q Consensus 226 ~~s~P~w~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~rvn~~k~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (528)
.|++|+||+++|.+.||++ ++++++++++++||+++|||++| .+++++.+.|++.|+. .+..+++++.+.+.....
T Consensus 5 ~~~~P~~~~~~~~~~~g~~~~~~~~~~a~~~~~p~~lRvN~lk-~~~~~~~~~L~~~g~~--~~~~~~~~~~~~~~~~~~ 81 (479)
T 2frx_A 5 TVYFPDAFLTQMREAMPSTLSFDDFLAACQRPLRRSIRVNTLK-ISVADFLQLTAPYGWT--LTPIPWCEEGFWIERDNE 81 (479)
T ss_dssp --CCCHHHHHHHGGGCC----CHHHHHHHTSCCCCCEEECTTT-CCHHHHHHHHGGGCCC--CCEETTEEEEEC------
T ss_pred cccCcHHHHHHHHHHcCccHHHHHHHHhcCCCCCEEEEEeCCC-CCHHHHHHHHHHcCCc--eeecCCCCceEEEecCcc
Confidence 4789999999999999977 57999999999999999999999 7999999999987654 456677777776643211
Q ss_pred ---chhcccccccceeEeecchHHHHHHhcCCC--CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHH
Q 009708 305 ---NVIQAGLLKEGLCAVQDESAGLVVAVVDPQ--PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNET 379 (528)
Q Consensus 305 ---~~~~~~~~~~G~~~~Qd~~s~l~~~~l~~~--~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n 379 (528)
.+..++.|.+|.+++||++|++++.++.+. +|++|||+|||||++|+++|+.+++.++|+|+|+++.+++.+++|
T Consensus 82 ~~~~~~~~~~~~~G~~~~Qd~~s~l~~~~L~~~~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n 161 (479)
T 2frx_A 82 DALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHAN 161 (479)
T ss_dssp ---CGGGSHHHHTTSEEECCHHHHHHHHHHTTTTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHH
T ss_pred cccCcccChHHhCcEEEEECHHHHHHHHHhCcccCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHH
Confidence 356678899999999999999999999988 999999999999999999999988789999999999999999999
Q ss_pred HHHcCCCccEEEEcCccccccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCC
Q 009708 380 AKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459 (528)
Q Consensus 380 ~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG 459 (528)
++++|+.+ ++++++|+..+.....+.||+|++||||||+|+++++|++.|.++++++..+..+|.++|.+++++|||||
T Consensus 162 ~~r~g~~n-v~~~~~D~~~~~~~~~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG 240 (479)
T 2frx_A 162 ISRCGISN-VALTHFDGRVFGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGG 240 (479)
T ss_dssp HHHHTCCS-EEEECCCSTTHHHHSTTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEE
T ss_pred HHHcCCCc-EEEEeCCHHHhhhhccccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 99999986 89999999887643346899999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCCchhhHHHHHHHHhhCCCc-eEecCCCCCCC--ccccCCceEEEcCCCCCCCceEEEEEEec
Q 009708 460 VLVYSTCSIDPEENEERVEAFLLRHPEF-SIDPADGLVPS--DFVTKHGFFFSDPIKHSLDGAFAARLVRA 527 (528)
Q Consensus 460 ~LvysTcs~~~~Ene~~v~~~l~~~~~~-~~~~~~~~~~~--~~~~~~g~~~~~P~~~~~dGff~a~l~k~ 527 (528)
+|||+|||++++||+++|.+|+++++++ ++.++...++. ...+..|+++++||.+++||||+|+|+|.
T Consensus 241 ~LvysTcs~~~~Ene~vv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~r~~P~~~~~dGfF~A~l~k~ 311 (479)
T 2frx_A 241 TLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFPGANKALTEEGFLHVFPQIYDCEGFFVARLRKT 311 (479)
T ss_dssp EEEEEESCCSSTTTHHHHHHHHHHSTTTEEECCCTTSSTTGGGGBCTTSCEEECTTTTTSCCEEEEEEEEC
T ss_pred EEEEecccCCcccCHHHHHHHHHHCCCceecccccccccccccccccCCeEEECCCCCCcCccEEEEEEEc
Confidence 9999999999999999999999999987 55555432221 12345789999999999999999999985
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-53 Score=453.19 Aligned_cols=288 Identities=26% Similarity=0.315 Sum_probs=251.8
Q ss_pred hcChHHHHHHHHHHhCHHHHHHHHHhcCCCCC-eEEEEcCCCCCCHHHHHHHHhhcCCCCC-ceecccCCceEEeeCCcc
Q 009708 227 YSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPS-FSLRANSRKGVTRADLVMQLNLLKLQVP-HELSLHLDEFIRVKTGLQ 304 (528)
Q Consensus 227 ~s~P~w~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~rvn~~k~~~~~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~~~~~ 304 (528)
.++|+||+++|.+.||+ ++++++++++++|| +++|||++| + +++.+.+. +... ....+++++.++ . +
T Consensus 6 ~~~P~w~~~~~~~~~g~-e~~~~~~a~~~~~~~~~lRvN~lk-~--~~~~~~~~---~~~~~~~~~~~~~~~~~-~-~-- 74 (456)
T 3m4x_A 6 TTLPQQFIKKYRLLLGE-EASDFFSALEQGSVKKGFRWNPLK-P--AGLDMVQT---YHSEELQPAPYSNEGFL-G-T-- 74 (456)
T ss_dssp -CCCHHHHHHHHHHHGG-GHHHHHHHHHHCCCCCEEECCTTS-T--THHHHHHH---HTCSSCCBCTTCTTEEE-S-C--
T ss_pred hhChHHHHHHHHHHhCH-HHHHHHHHcCCCCCCcEEEEcCcc-H--HHHHHhcC---CcccccCCCCCCcceEE-c-C--
Confidence 57999999999999995 59999999999999 999999999 3 66665442 2211 125678888877 2 2
Q ss_pred chhcccccccceeEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcC
Q 009708 305 NVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQ 384 (528)
Q Consensus 305 ~~~~~~~~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g 384 (528)
.+..++.|.+|++++||++|++++.++++++|++|||+|||||++|+++|+++++.++|+|+|+++.+++.+++|++++|
T Consensus 75 ~~~~~~~~~~G~~~vQd~ss~l~~~~L~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g 154 (456)
T 3m4x_A 75 VNGKSFLHQAGYEYSQEPSAMIVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWG 154 (456)
T ss_dssp CCTTSHHHHTTSCEECCTTTHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCCChHHhCCcEEEECHHHHHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcC
Confidence 23567889999999999999999999999999999999999999999999998888999999999999999999999999
Q ss_pred CCccEEEEcCccccccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 385 VNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 385 ~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
+.+ +.++++|+..+.....+.||+|++||||||+|+++++|+++|.++..++..+..+|.++|..++++|||||+||||
T Consensus 155 ~~n-v~v~~~Da~~l~~~~~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYs 233 (456)
T 3m4x_A 155 VSN-AIVTNHAPAELVPHFSGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYS 233 (456)
T ss_dssp CSS-EEEECCCHHHHHHHHTTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred CCc-eEEEeCCHHHhhhhccccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 986 8999999988764345789999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCchhhHHHHHHHHhhCCCceEecCCCCCC-----Cccc---cCCceEEEcCCCCCCCceEEEEEEec
Q 009708 465 TCSIDPEENEERVEAFLLRHPEFSIDPADGLVP-----SDFV---TKHGFFFSDPIKHSLDGAFAARLVRA 527 (528)
Q Consensus 465 Tcs~~~~Ene~~v~~~l~~~~~~~~~~~~~~~~-----~~~~---~~~g~~~~~P~~~~~dGff~a~l~k~ 527 (528)
|||++++|||++|.+|+++|+ |++.++..... ..+. ...++++++||.+++||||+|+|+|.
T Consensus 234 TCs~~~eEne~vv~~~l~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGFF~A~l~k~ 303 (456)
T 3m4x_A 234 TCTFAPEENEEIISWLVENYP-VTIEEIPLTQSVSSGRSEWGSVAGLEKTIRIWPHKDQGEGHFVAKLTFH 303 (456)
T ss_dssp ESCCCGGGTHHHHHHHHHHSS-EEEECCCCSSCCEECCGGGSSSTTGGGSEEECTTTSSSSCEEEEEEEEC
T ss_pred EeecccccCHHHHHHHHHhCC-CEEEeccccccccccccccccccccCCeEEECCCCCCCcCeEEEEEEEC
Confidence 999999999999999999999 99988753211 0111 23468999999999999999999984
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-49 Score=403.59 Aligned_cols=270 Identities=26% Similarity=0.352 Sum_probs=217.6
Q ss_pred CCCCCeEEEEcCCCCCCHHHHHHHHhhcCCCCCc----------------eecccCCceEEeeCCccchhccccccccee
Q 009708 254 NSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPH----------------ELSLHLDEFIRVKTGLQNVIQAGLLKEGLC 317 (528)
Q Consensus 254 ~~~~~~~~rvn~~k~~~~~~~~~~L~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 317 (528)
+.++|+++|||++| .+++++++.|++.|+.... ..++++++.+.+..+. .+..++.|++|++
T Consensus 7 ~~~~p~~lRvN~lk-~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~-~~~~~~~~~~G~~ 84 (309)
T 2b9e_A 7 ASQLPRFVRVNTLK-TCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFLLDPLMPELLVFPAQT-DLHEHPLYRAGHL 84 (309)
T ss_dssp --CCCEEEEECTTT-CCHHHHHHHHHHTTCEEEEECSSHHHHHTCCTTEEEECSSSTTEEEECTTC-CCTTSHHHHTTSE
T ss_pred CCCCCeEEEEeCCC-CCHHHHHHHHHhCCCeeeeccccccccccccccccccccCCCceEEeCCCC-CcccChHHHCCeE
Confidence 46789999999999 7999999999987763211 1124556677775432 4667889999999
Q ss_pred EeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccc
Q 009708 318 AVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 397 (528)
Q Consensus 318 ~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~ 397 (528)
++||.+|++++.++++++|++|||+|||||++|+++|+.+++.++|+|+|+++.+++.+++|++++|+.+ ++++++|+.
T Consensus 85 ~~Qd~~s~l~~~~l~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~-v~~~~~D~~ 163 (309)
T 2b9e_A 85 ILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSC-CELAEEDFL 163 (309)
T ss_dssp EECCTGGGHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEECCGG
T ss_pred EEECHHHHHHHHHhCCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEeCChH
Confidence 9999999999999999999999999999999999999998878999999999999999999999999986 899999998
Q ss_pred cccccC--CCCCCEEEEcCCCCCCccccCCchhhccC--CHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhh
Q 009708 398 TFADNS--TVKCDKVLLDAPCSGLGVLSKRADLRWNR--RLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEEN 473 (528)
Q Consensus 398 ~~~~~~--~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~--~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~En 473 (528)
.+.... ..+||+|++||||||+|+++++||++|.. +++++..+..+|.++|++|+++++ ||+|||+|||++++||
T Consensus 164 ~~~~~~~~~~~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~~~~En 242 (309)
T 2b9e_A 164 AVSPSDPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSLCQEEN 242 (309)
T ss_dssp GSCTTCGGGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCCCGGGT
T ss_pred hcCccccccCCCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCCChHHh
Confidence 865422 14799999999999999999999999864 677899999999999999999997 9999999999999999
Q ss_pred HHHHHHHHhhCCC-ceEecCCCCCCCc----cccCCceEEEcCCCCCCCceEEEEEEec
Q 009708 474 EERVEAFLLRHPE-FSIDPADGLVPSD----FVTKHGFFFSDPIKHSLDGAFAARLVRA 527 (528)
Q Consensus 474 e~~v~~~l~~~~~-~~~~~~~~~~~~~----~~~~~g~~~~~P~~~~~dGff~a~l~k~ 527 (528)
+++|.+||++|++ |+++++...++.. +....++++++||.+++||||+|+|+|.
T Consensus 243 e~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGfF~A~l~k~ 301 (309)
T 2b9e_A 243 EDVVRDALQQNPGAFRLAPALPAWPHRGLSTFPGAEHCLRASPETTLSSGFFVAVIERV 301 (309)
T ss_dssp HHHHHHHHTTSTTTEEECCCCTTCCCBCCSSSTTGGGSEEECHHHHSSCSEEEEEEEEC
T ss_pred HHHHHHHHHhCCCcEEEeccccccccccccccCCCCCeEEECCCCCCCCCeEEEEEEEC
Confidence 9999999999999 9998775433321 1124578999999999999999999985
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-47 Score=389.44 Aligned_cols=295 Identities=22% Similarity=0.225 Sum_probs=230.8
Q ss_pred HHHhhhcChHHHHHHHHHHhCHHHHHHHHHhcCCCCCeEEEEcCCCCCCHHHHHHHHhhcCCCC----------------
Q 009708 222 ALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV---------------- 285 (528)
Q Consensus 222 ~ls~~~s~P~w~~~~~~~~~g~~~~~~~~~~~~~~~~~~~rvn~~k~~~~~~~~~~L~~~~~~~---------------- 285 (528)
.++..| |-+.+.+.||+ ++..+..++.++++..+|+|+.+ +.+++...|+..|...
T Consensus 17 ~~al~~-----Fd~~Y~~~~G~-~W~~~r~aL~~~~~~~a~vN~f~--~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~ 88 (359)
T 4fzv_A 17 RLALQN-----FDMTYSVQFGD-LWPSIRVSLLSEQKYGALVNNFA--AWDHVSAKLEQLSAKDFVNEAISHWELQSEGG 88 (359)
T ss_dssp HHHHHH-----HHHHHHHHHGG-GHHHHHHHHTSCCCCEEEECTTS--CHHHHHHHHHHTTCEEHHHHHHHTTTCCC---
T ss_pred HHHHHH-----HHHHHHHHhhh-hhHHHHHHHcCcchhEEEeccCC--ChHHHHHHHHhccCccchhhhhcccccccccc
Confidence 455555 67777888884 68889999999999999999985 6788888888755310
Q ss_pred ----CceecccCCc---eEEeeCCccchhccc-----ccccceeEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHH
Q 009708 286 ----PHELSLHLDE---FIRVKTGLQNVIQAG-----LLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYM 353 (528)
Q Consensus 286 ----~~~~~~~~~~---~~~~~~~~~~~~~~~-----~~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~l 353 (528)
+.....+.+. .+..+.+ ++...+ .+.-+.|++||.+|++++.+|+++||++|||+||||||||+++
T Consensus 89 ~~~~p~~~~~~~~~~l~~~~~~~g--~~~~~p~~~~g~~~vqd~~iQd~aS~l~~~~L~~~pg~~VLD~CAaPGGKT~~l 166 (359)
T 4fzv_A 89 QSAAPSPASWACSPNLRCFTFDRG--DISRFPPARPGSLGVMEYYLMDAASLLPVLALGLQPGDIVLDLCAAPGGKTLAL 166 (359)
T ss_dssp --CCSSCHHHHSCSSCCEEECCTT--CCCCCCCCCBCTTSSBSEEEECGGGHHHHHHHCCCTTEEEEESSCTTCHHHHHH
T ss_pred cccCCCcccccCCccceEEecCCC--ChhcCCCcccCceeccchhhhCHHHHHHHHHhCCCCCCEEEEecCCccHHHHHH
Confidence 0000001111 1222222 222333 3444568889999999999999999999999999999999999
Q ss_pred HHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCC-----ccEEEEcCccccccccCCCCCCEEEEcCCCCCC--ccccCCc
Q 009708 354 ASCLSGQGLVYAIDINKGRLRILNETAKLHQVN-----SVIRTIHADLRTFADNSTVKCDKVLLDAPCSGL--GVLSKRA 426 (528)
Q Consensus 354 a~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~-----~~i~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~--G~~~~~p 426 (528)
++.+ +.+.|+|+|+++.+++.+++|++++|.. +++.+.+.|+..+.....+.||+||+||||||+ |+++++|
T Consensus 167 a~~~-~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~fD~VLlDaPCSg~g~g~~r~~~ 245 (359)
T 4fzv_A 167 LQTG-CCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYDRVLVDVPCTTDRHSLHEEEN 245 (359)
T ss_dssp HHTT-CEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCEEEEEEECCCCCHHHHTTCCTT
T ss_pred HHhc-CCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccCCEEEECCccCCCCCcccccCh
Confidence 9975 4578999999999999999999999874 348899999998876556789999999999997 7889999
Q ss_pred hhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHHHhhCCCceEecCCCCCC---------
Q 009708 427 DLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVP--------- 497 (528)
Q Consensus 427 d~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~l~~~~~~~~~~~~~~~~--------- 497 (528)
+++|+++..++..+..+|.+||.+|+++|||||+|||||||++++|||+||++||++++++...++.....
T Consensus 246 ~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~~~ENE~vV~~~L~~~~~~~~~~~~~~~l~~~~~~~~~ 325 (359)
T 4fzv_A 246 NIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLSHLQNEYVVQGAIELLANQYSIQVQVEDLTHFRRVFMD 325 (359)
T ss_dssp CTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCCTTTTHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHTT
T ss_pred hhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCchhhCHHHHHHHHHhCCCCccccccccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999988754433211100
Q ss_pred C-cc-ccCCceEEEcCCCC-CCCceEEEEEEec
Q 009708 498 S-DF-VTKHGFFFSDPIKH-SLDGAFAARLVRA 527 (528)
Q Consensus 498 ~-~~-~~~~g~~~~~P~~~-~~dGff~a~l~k~ 527 (528)
. .+ ....+..+++||.+ +++|||+|+|+|.
T Consensus 326 ~~~~~~~~~~g~r~~P~~~~~~gGFFiA~L~Kv 358 (359)
T 4fzv_A 326 TFCFFSSCQVGELVIPNLMANFGPMYFCKMRRL 358 (359)
T ss_dssp TCEECTTCSSSEEEECBTTBCCCCEEEEEEEEC
T ss_pred ccccCccccceEEECCCCCCCCCCEEEEEEEEC
Confidence 0 00 11223368999976 5678999999985
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-43 Score=354.89 Aligned_cols=266 Identities=29% Similarity=0.354 Sum_probs=212.7
Q ss_pred HHhcCCCCCeEEEEcCCCCCCHHHHHHHHhhcCCCCCceecccCCceEEeeCCccchhcccccccceeEeecchHHHHHH
Q 009708 250 MVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVA 329 (528)
Q Consensus 250 ~~~~~~~~~~~~rvn~~k~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~Qd~~s~l~~~ 329 (528)
|+.+++++|+++|||++| .+++++.+.|++.|+. .+. ++.++.+.+......+...+.|.+|.+++||.++++++.
T Consensus 2 m~~~~~~~~~~~rvn~~~-~~~~~~~~~l~~~g~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~~qd~~s~l~~~ 77 (274)
T 3ajd_A 2 MIVYKGEKMQFIRVNTLK-INPEVLKKRLENKGVV--LEK-TFLDYAFEVKKSPFSIGSTPEYLFGYYMPQSISSMIPPI 77 (274)
T ss_dssp -------CCEEEEECTTT-CCHHHHHHHHHTTTCE--EEE-CSSTTEEEEEECSSCTTSSHHHHTTSEEECCSGGGHHHH
T ss_pred hhhhCCCCCeEEEEeCCC-CCHHHHHHHHHHCCCe--ecC-CCCCceEEEecCCCCcccChhhhCCeEEEeCHHHHHHHH
Confidence 445678899999999999 7999999999986653 344 778888887322124566788999999999999999999
Q ss_pred hcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---CCCC
Q 009708 330 VVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---STVK 406 (528)
Q Consensus 330 ~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---~~~~ 406 (528)
++++++|++|||+|||+|++|+++++.+++.++|+|+|+++.+++.+++|++++|+.+ ++++++|+..+... ..++
T Consensus 78 ~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~-v~~~~~D~~~~~~~~~~~~~~ 156 (274)
T 3ajd_A 78 VLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLN-TIIINADMRKYKDYLLKNEIF 156 (274)
T ss_dssp HHCCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEESCHHHHHHHHHHTTCC
T ss_pred HhCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCc-EEEEeCChHhcchhhhhcccc
Confidence 9999999999999999999999999988766899999999999999999999999985 99999999887542 1468
Q ss_pred CCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHHHhhCCC
Q 009708 407 CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPE 486 (528)
Q Consensus 407 fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~l~~~~~ 486 (528)
||+|++||||||+|+++++| .++.+++..+...|.++|++++++|||||+|+|+|||++++||+++|.+|+++|++
T Consensus 157 fD~Vl~d~Pcs~~g~~~~~p----~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~~~ene~~v~~~l~~~~~ 232 (274)
T 3ajd_A 157 FDKILLDAPCSGNIIKDKNR----NVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSMEVEENEEVIKYILQKRND 232 (274)
T ss_dssp EEEEEEEECCC----------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCCCTTSSHHHHHHHHHHCSS
T ss_pred CCEEEEcCCCCCCcccccCC----CCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCChHHhHHHHHHHHHhCCC
Confidence 99999999999999999987 35677888888999999999999999999999999999999999999999999999
Q ss_pred ceEecCCCCCCCc---c-ccCCceEEEcCCCCCCCceEEEEEEec
Q 009708 487 FSIDPADGLVPSD---F-VTKHGFFFSDPIKHSLDGAFAARLVRA 527 (528)
Q Consensus 487 ~~~~~~~~~~~~~---~-~~~~g~~~~~P~~~~~dGff~a~l~k~ 527 (528)
|++.++......+ + ....|+++++||.++ ||+|+|+|.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~---ff~a~l~k~ 274 (274)
T 3ajd_A 233 VELIIIKANEFKGINIKEGYIKGTLRVFPPNEP---FFIAKLRKI 274 (274)
T ss_dssp EEEECCCSTTCTTSCEEECSSTTCEEECTTSCC---EEEEEEEEC
T ss_pred cEEecCccccccCcccccccCCCeEEECCCCCC---EEEEEEEEC
Confidence 9998775211111 1 123678999998764 999999984
|
| >1tzv_A NUSB protein, N utilization substance protein B homolog; RNA-protein interaction, transcriptional antitermination, transcription regulation; 1.35A {Thermotoga maritima} SCOP: a.79.1.1 PDB: 1tzu_A 1tzt_A 1tzw_A 1tzx_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-29 Score=227.09 Aligned_cols=128 Identities=19% Similarity=0.249 Sum_probs=116.2
Q ss_pred ChHHHHHHHHHHHHHhCCC-chHHHhhcCCCCCCCccchhhhhcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009708 58 SPHRAVSAVRLMRIQFGGA-FADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLL 136 (528)
Q Consensus 58 ~~aR~~A~~~Ly~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lv~gv~~~~~~LD~~i~~~ 136 (528)
+.+|+.|+|+||+++.++. +++.+.... .+ ..+++.|++|+++||+||++++..||++|+++
T Consensus 6 ~~aR~~A~~~L~~~~~~~~~~~~~~l~~~----------------~~-~~l~~~d~~~~~~Lv~gvl~~~~~lD~~I~~~ 68 (142)
T 1tzv_A 6 RRMRLAVFKALFQHEFRRDEDLEQILEEI----------------LD-ETYDKKAKEDARRYIRGIKENLSMIDDLISRY 68 (142)
T ss_dssp HHHHHHHHHHHHHHTTCTTSCHHHHHHHH----------------CC-TTSCHHHHHHHHHHHHHHHHTHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHH----------------HH-hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3789999999999999888 777766542 22 45789999999999999999999999999999
Q ss_pred ccCCCCCCcccHHHHHHHHHHHHHHHhc-CCCCchhHHHHHHHHHHhcCCCchhhHHHHHHHHHhhcC
Q 009708 137 CHDEKTFSSMEPLLLQILRIGFYEIVKL-DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKD 203 (528)
Q Consensus 137 l~~~~~~~~l~~~~~~iLrlg~~el~~~-~~p~~~~inEaV~lak~~~~~~~~~fVN~VL~~~~r~~~ 203 (528)
+++ |+++++++++++|||+|+|||+|+ ++|++++|||||+|||+|+++++++|||||||+++++..
T Consensus 69 l~~-w~l~rl~~~~r~iLrla~yEl~~~~~iP~~vaInEaVelaK~~~~~~~~~fVNgVL~~i~r~~~ 135 (142)
T 1tzv_A 69 LEK-WSLNRLSVVDRNVLRLATYELLFEKDIPIEVTIDEAIEIAKRYGTENSGKFVNGILDRIAKEHA 135 (142)
T ss_dssp CSS-SCGGGSCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHC
T ss_pred cCC-CChHHCCHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHhc
Confidence 987 999999999999999999999998 599999999999999999999999999999999998653
|
| >3d3b_A Protein NUSB, N utilization substance protein B; NUSB, NUSE, NUT site, phage lambda, lambdan antitermina antitermination; HET: NHE; 1.30A {Escherichia coli} PDB: 3d3c_A 3imq_A 1ey1_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-29 Score=228.19 Aligned_cols=127 Identities=22% Similarity=0.302 Sum_probs=112.4
Q ss_pred ChHHHHHHHHHHHHHhCCCchHHHhhcCCCCCCCccchhhhhcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 009708 58 SPHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLC 137 (528)
Q Consensus 58 ~~aR~~A~~~Ly~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lv~gv~~~~~~LD~~i~~~l 137 (528)
+.+|+.|+|+||+++..+...+.+...+ ++...+++.|++|+++||+||++++..||++|++++
T Consensus 9 ~~aR~~A~~~L~~~~~~~~~~~~~~~~~----------------~~~~~l~~~d~~~~~~Lv~gvl~~~~~lD~~I~~~l 72 (141)
T 3d3b_A 9 RRARECAVQALYSWQLSQNDIADVEYQF----------------LAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYL 72 (141)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHHHHH----------------HHHSCCTTSCHHHHHHHHHHHHHTHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHHHHccCCCHHHHHHHH----------------HHhccCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHc
Confidence 3689999999999988776665554331 112346778999999999999999999999999999
Q ss_pred cCCCCCCcccHHHHHHHHHHHHHHHhc-CCCCchhHHHHHHHHHHhcCCCchhhHHHHHHHHHhhc
Q 009708 138 HDEKTFSSMEPLLLQILRIGFYEIVKL-DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLK 202 (528)
Q Consensus 138 ~~~~~~~~l~~~~~~iLrlg~~el~~~-~~p~~~~inEaV~lak~~~~~~~~~fVN~VL~~~~r~~ 202 (528)
+ |+++++++++++|||+|+|||+|+ ++|++++|||||+|||+|+++++++|||||||+++++.
T Consensus 73 ~--~~l~rl~~~~r~iLrla~yEll~~~~iP~~vaInEaVelaK~~~~~~~~~fVNgVLr~i~r~~ 136 (141)
T 3d3b_A 73 S--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVI 136 (141)
T ss_dssp T--TCSSCCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHSCTTHHHHHHHHHHHHHHHH
T ss_pred C--CCHHHcCHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHCCCCchHHHHHHHHHHHHHH
Confidence 7 999999999999999999999997 59999999999999999999999999999999999864
|
| >3r2d_A Protein NUSB, N utilization substance protein B; cross species NUSB-NUSE-RNA interaction; 2.20A {Aquifex aeolicus} PDB: 2jr0_A 3r2c_A* 4eya_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.1e-29 Score=227.53 Aligned_cols=130 Identities=22% Similarity=0.214 Sum_probs=113.5
Q ss_pred ChHHHHHHHHHHHHHhCCCchHHHhhcCCCCCCCccchhhhhcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 009708 58 SPHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLC 137 (528)
Q Consensus 58 ~~aR~~A~~~Ly~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lv~gv~~~~~~LD~~i~~~l 137 (528)
+.+|+.|+|+||+++.++.+++.+++.. .. ....+++.|+.|+++||+||++|+..||++|++++
T Consensus 6 ~~aR~~A~q~L~~~~~~~~~~~~~l~~~----------~~-----~~~~~~~~dr~~~~~lv~gvl~~~~~lD~~i~~~l 70 (149)
T 3r2d_A 6 KGARDTAFLVLYRWDLRGENPGELFKEV----------VE-----EKNIKNKDAYEYAKKLVDTAVRHIEEIDSIIEKHL 70 (149)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHHHHH----------HH-----HHTCCCHHHHHHHHHHHHHHHHTHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHH----------HH-----hcccCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 4789999999999998888888776542 11 11127899999999999999999999999999999
Q ss_pred cCCCCCCcccHHHHHHHHHHHHHHHhc-CCCCchhHHHHHHHHHHhcCCCchhhHHHHHHHHHhhcC
Q 009708 138 HDEKTFSSMEPLLLQILRIGFYEIVKL-DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKD 203 (528)
Q Consensus 138 ~~~~~~~~l~~~~~~iLrlg~~el~~~-~~p~~~~inEaV~lak~~~~~~~~~fVN~VL~~~~r~~~ 203 (528)
++ |+++++++++++|||+|+|||+|+ ++|++++|||||+|||.|+++++++||||||++++++..
T Consensus 71 ~~-w~~~rl~~~~r~iLrla~yEl~~~~~iP~~vaInEaVelaK~~~~~~~~~fVNgVLr~i~r~~~ 136 (149)
T 3r2d_A 71 KG-WSIDRLGYVERNALRLGVAELIFLKSKEPGRVFIDIVDLVKKYADEKAGKFVNGVLSAIYKAYI 136 (149)
T ss_dssp ----CGGGSCHHHHHHHHHHHHHHTTSCCSCHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHC-
T ss_pred cC-CCccccCHHHHHHHHHHHHHHHHcCCCCCeehHHHHHHHHHHhCCCCccccchHHhhHHHHhhc
Confidence 76 999999999999999999999998 599999999999999999999999999999999999754
|
| >1eyv_A NUSB protein, N-utilizing substance protein B homolog; helical bundle, structural genomics, PSI, protein structure initiative; 1.60A {Mycobacterium tuberculosis} SCOP: a.79.1.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=3.2e-28 Score=222.48 Aligned_cols=132 Identities=23% Similarity=0.290 Sum_probs=108.8
Q ss_pred ChHHHHHHHHHHHHHhCCCchHHHhhcCCCCCCCccchhhhhcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 009708 58 SPHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLC 137 (528)
Q Consensus 58 ~~aR~~A~~~Ly~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lv~gv~~~~~~LD~~i~~~l 137 (528)
+.+|+.|+|+||+++.++.+.+.+.... . .+. ......+.|+.|+++||+||++++..||++|.+++
T Consensus 11 ~~aR~~Alq~L~~~~~~~~~~~~~l~~~----------~--~l~-~~d~~~~~~~~~~~~lv~gvl~~~~~lD~~i~~~l 77 (156)
T 1eyv_A 11 HQARKRAVALLFEAEVRGISAAEVVDTR----------A--ALA-EAKPDIARLHPYTAAVARGVSEHAAHIDDLITAHL 77 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTSCHHHHHHHH----------H--HHH-HHCTTSCCCCHHHHHHHHHHHHTHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHH----------H--hcc-ccccccHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 4689999999999988887766654321 0 000 00112244589999999999999999999999999
Q ss_pred cCCCCCCcccHHHHHHHHHHHHHHHhc-CCCCchhHHHHHHHHHHhcCCCchhhHHHHHHHHHhhcC
Q 009708 138 HDEKTFSSMEPLLLQILRIGFYEIVKL-DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKD 203 (528)
Q Consensus 138 ~~~~~~~~l~~~~~~iLrlg~~el~~~-~~p~~~~inEaV~lak~~~~~~~~~fVN~VL~~~~r~~~ 203 (528)
++ |+++++++++++|||+|+|||+|+ ++|++++|||+|+|||+|+++++++|||||||++.+..+
T Consensus 78 ~~-w~l~rl~~~~r~iLrla~yel~~~~~iP~~v~InEaVelak~~~~~~~~~fVNgVLr~i~r~~~ 143 (156)
T 1eyv_A 78 RG-WTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAKELSTDDSPGFVNGVLGQVMLVTP 143 (156)
T ss_dssp TT-CCGGGSCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHSCTTHHHHHHHHHHHHC----
T ss_pred cC-CChhhCCHHHHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHhCCCccccchHHHHHHHHHhHH
Confidence 76 999999999999999999999998 599999999999999999999999999999999998754
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.79 E-value=5.6e-19 Score=184.88 Aligned_cols=161 Identities=24% Similarity=0.254 Sum_probs=130.3
Q ss_pred ccccccceeEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCcc
Q 009708 309 AGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSV 388 (528)
Q Consensus 309 ~~~~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~ 388 (528)
...++.|.|..|.....++..++ ++|.+|||+|||+|++++++|.. +..|+|+|+|+.+++.+++|++.+|+.+
T Consensus 190 ~~~~~tG~f~dqr~~r~~l~~~~--~~g~~VLDlg~GtG~~sl~~a~~---ga~V~avDis~~al~~a~~n~~~ng~~~- 263 (393)
T 4dmg_A 190 ALAQKTGYYLDQRENRRLFEAMV--RPGERVLDVYSYVGGFALRAARK---GAYALAVDKDLEALGVLDQAALRLGLRV- 263 (393)
T ss_dssp TTCCTTSSCGGGHHHHHHHHTTC--CTTCEEEEESCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHTCCC-
T ss_pred hhccccCcCCCHHHHHHHHHHHh--cCCCeEEEcccchhHHHHHHHHc---CCeEEEEECCHHHHHHHHHHHHHhCCCC-
Confidence 45678999999999988887664 36899999999999999999985 3459999999999999999999999985
Q ss_pred EEEEcCccccccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCC
Q 009708 389 IRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 468 (528)
Q Consensus 389 i~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~ 468 (528)
.+.++|+.++.....+.||+|++||||.. .+..++......|.+++..+.++|||||+|+|++|+.
T Consensus 264 -~~~~~D~~~~l~~~~~~fD~Ii~dpP~f~-------------~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~ 329 (393)
T 4dmg_A 264 -DIRHGEALPTLRGLEGPFHHVLLDPPTLV-------------KRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSY 329 (393)
T ss_dssp -EEEESCHHHHHHTCCCCEEEEEECCCCCC-------------SSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred -cEEEccHHHHHHHhcCCCCEEEECCCcCC-------------CCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 45699998876443345999999999943 2234677788889999999999999999999999999
Q ss_pred CchhhH--HHHHHHHh-hCCCceE
Q 009708 469 DPEENE--ERVEAFLL-RHPEFSI 489 (528)
Q Consensus 469 ~~~Ene--~~v~~~l~-~~~~~~~ 489 (528)
+..+++ +.+...+. ....+++
T Consensus 330 ~~~~~~f~~~v~~a~~~~g~~~~i 353 (393)
T 4dmg_A 330 HLRLEDLLEVARRAAADLGRRLRV 353 (393)
T ss_dssp TSCHHHHHHHHHHHHHHHTCCEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCeEEE
Confidence 887665 55655554 3334443
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.74 E-value=7.5e-18 Score=162.22 Aligned_cols=169 Identities=16% Similarity=0.142 Sum_probs=129.7
Q ss_pred EeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccc
Q 009708 318 AVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 397 (528)
Q Consensus 318 ~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~ 397 (528)
.+++..+.++..++...++.+|||+|||+|..++.+++.+++.++|+++|+++.+++.+++|++.+|+.++++++++|+.
T Consensus 41 ~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 120 (221)
T 3u81_A 41 NVGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQ 120 (221)
T ss_dssp GCCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHH
T ss_pred ccCHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHH
Confidence 34566667777776666788999999999999999998776678999999999999999999999999878999999997
Q ss_pred cccccCC-----CCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchh
Q 009708 398 TFADNST-----VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEE 472 (528)
Q Consensus 398 ~~~~~~~-----~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~E 472 (528)
+..+... ++||+|++|+++.. . ....+++..+ ++|||||+|++.+|.....
T Consensus 121 ~~l~~~~~~~~~~~fD~V~~d~~~~~------------------~----~~~~~~~~~~-~~LkpgG~lv~~~~~~~~~- 176 (221)
T 3u81_A 121 DLIPQLKKKYDVDTLDMVFLDHWKDR------------------Y----LPDTLLLEKC-GLLRKGTVLLADNVIVPGT- 176 (221)
T ss_dssp HHGGGTTTTSCCCCCSEEEECSCGGG------------------H----HHHHHHHHHT-TCCCTTCEEEESCCCCCCC-
T ss_pred HHHHHHHHhcCCCceEEEEEcCCccc------------------c----hHHHHHHHhc-cccCCCeEEEEeCCCCcch-
Confidence 7544332 58999999976621 1 1123456666 9999999999998885432
Q ss_pred hHHHHHHHHhhCCCceEecCCCCCCCccccCCceEEEcCCCCCCCceEEEEEEe
Q 009708 473 NEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLVR 526 (528)
Q Consensus 473 ne~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~~~dGff~a~l~k 526 (528)
..+.+++..+++|+...++ ..+|.....|||++++++.
T Consensus 177 --~~~~~~l~~~~~~~~~~~~--------------~~~~~~~~~dG~~~~~~~g 214 (221)
T 3u81_A 177 --PDFLAYVRGSSSFECTHYS--------------SYLEYMKVVDGLEKAIYQG 214 (221)
T ss_dssp --HHHHHHHHHCTTEEEEEEE--------------EEETTTTEEEEEEEEEECC
T ss_pred --HHHHHHHhhCCCceEEEcc--------------cccccCCCCCceEEEEEeC
Confidence 3456788888887765431 1245555679999998763
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.8e-17 Score=162.79 Aligned_cols=165 Identities=16% Similarity=0.228 Sum_probs=123.4
Q ss_pred cchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccc
Q 009708 321 DESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400 (528)
Q Consensus 321 d~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~ 400 (528)
+..+.++..++...++.+|||+|||+|..+..+++.+++.++|+++|+++.+++.+++++++.|+.++++++++|+.+..
T Consensus 49 ~~~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l 128 (248)
T 3tfw_A 49 ANQGQFLALLVRLTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSL 128 (248)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHH
T ss_pred HHHHHHHHHHHhhcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHH
Confidence 44555555555556788999999999999999999876578999999999999999999999999877999999998754
Q ss_pred ccC--CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCC--------c
Q 009708 401 DNS--TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSID--------P 470 (528)
Q Consensus 401 ~~~--~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~--------~ 470 (528)
+.. .++||+|++|+++. . +..+++.+.++|||||+|++.++.+. .
T Consensus 129 ~~~~~~~~fD~V~~d~~~~------------------~-------~~~~l~~~~~~LkpGG~lv~~~~~~~g~v~~~~~~ 183 (248)
T 3tfw_A 129 ESLGECPAFDLIFIDADKP------------------N-------NPHYLRWALRYSRPGTLIIGDNVVRDGEVVNPQSA 183 (248)
T ss_dssp HTCCSCCCCSEEEECSCGG------------------G-------HHHHHHHHHHTCCTTCEEEEECCSGGGGGGCTTCC
T ss_pred HhcCCCCCeEEEEECCchH------------------H-------HHHHHHHHHHhcCCCeEEEEeCCCcCCcccCcccc
Confidence 433 24899999998752 1 12358889999999999999888754 1
Q ss_pred hhhHHHH---HHHHhhCCCceEecCCCCCCCccccCCceEEEcCC-CCCCCceEEEEEEec
Q 009708 471 EENEERV---EAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPI-KHSLDGAFAARLVRA 527 (528)
Q Consensus 471 ~Ene~~v---~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~P~-~~~~dGff~a~l~k~ 527 (528)
.+....+ ..++..+++|+...+. |. ..+.|||++|++++.
T Consensus 184 ~~~~~~~~~~~~~l~~~~~~~~~~l~-----------------~~g~~~~DG~~i~~~~~~ 227 (248)
T 3tfw_A 184 DERVQGVRQFIEMMGAEPRLTATALQ-----------------TVGTKGWDGFTLAWVNAA 227 (248)
T ss_dssp CHHHHHHHHHHHHHHHCTTEEEEEEE-----------------ECSTTCSEEEEEEEECCC
T ss_pred chHHHHHHHHHHHHhhCCCEEEEEee-----------------cCCCCCCCeeEEEEEeCC
Confidence 2222233 3445567777654321 11 234699999988763
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.3e-16 Score=157.47 Aligned_cols=166 Identities=17% Similarity=0.228 Sum_probs=115.0
Q ss_pred cceeEeecch-------HHHHHHhcCCC-CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCC
Q 009708 314 EGLCAVQDES-------AGLVVAVVDPQ-PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQV 385 (528)
Q Consensus 314 ~G~~~~Qd~~-------s~l~~~~l~~~-~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~ 385 (528)
.+..+.|+.. +.++..++.+. ++.+|||+|||+|..++.+++.. .++|+|+|+++.+++.+++|++.+++
T Consensus 20 ~~~~i~q~~~~~~~~~d~~ll~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~--~~~v~gvDi~~~~~~~a~~n~~~~~~ 97 (259)
T 3lpm_A 20 ENLRIIQSPSVFSFSIDAVLLAKFSYLPIRKGKIIDLCSGNGIIPLLLSTRT--KAKIVGVEIQERLADMAKRSVAYNQL 97 (259)
T ss_dssp TTEEEEEBTTTBCCCHHHHHHHHHCCCCSSCCEEEETTCTTTHHHHHHHTTC--CCEEEEECCSHHHHHHHHHHHHHTTC
T ss_pred CCEEEEeCCCCccCcHHHHHHHHHhcCCCCCCEEEEcCCchhHHHHHHHHhc--CCcEEEEECCHHHHHHHHHHHHHCCC
Confidence 4445556554 77888888888 89999999999999999999862 34999999999999999999999999
Q ss_pred CccEEEEcCccccccccC-CCCCCEEEEcCCCCCC-ccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEE
Q 009708 386 NSVIRTIHADLRTFADNS-TVKCDKVLLDAPCSGL-GVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463 (528)
Q Consensus 386 ~~~i~~~~~D~~~~~~~~-~~~fD~Vl~D~Pcsg~-G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvy 463 (528)
.++++++++|+.++.... .++||+|++|||+... +.-...++..+.. ...........+++.+.++|||||++++
T Consensus 98 ~~~v~~~~~D~~~~~~~~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~---a~~~~~~~~~~~l~~~~~~LkpgG~l~~ 174 (259)
T 3lpm_A 98 EDQIEIIEYDLKKITDLIPKERADIVTCNPPYFATPDTSLKNTNEHFRI---ARHEVMCTLEDTIRVAASLLKQGGKANF 174 (259)
T ss_dssp TTTEEEECSCGGGGGGTSCTTCEEEEEECCCC--------------------------HHHHHHHHHHHHHEEEEEEEEE
T ss_pred cccEEEEECcHHHhhhhhccCCccEEEECCCCCCCccccCCCCchHHHh---hhccccCCHHHHHHHHHHHccCCcEEEE
Confidence 878999999999876532 4789999999999655 1111222111110 0111122345789999999999999997
Q ss_pred EcCCCCchhhHHHHHHHHhhCCCceE
Q 009708 464 STCSIDPEENEERVEAFLLRHPEFSI 489 (528)
Q Consensus 464 sTcs~~~~Ene~~v~~~l~~~~~~~~ 489 (528)
.. +.+....+...+.++ +|.+
T Consensus 175 ~~----~~~~~~~~~~~l~~~-~~~~ 195 (259)
T 3lpm_A 175 VH----RPERLLDIIDIMRKY-RLEP 195 (259)
T ss_dssp EE----CTTTHHHHHHHHHHT-TEEE
T ss_pred EE----cHHHHHHHHHHHHHC-CCce
Confidence 43 233334455566654 3443
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.7e-17 Score=173.43 Aligned_cols=160 Identities=25% Similarity=0.253 Sum_probs=128.3
Q ss_pred cccccceeEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccE
Q 009708 310 GLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVI 389 (528)
Q Consensus 310 ~~~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i 389 (528)
..+..|+|..|.....++..+ ++.+|||+|||+|++++.++.. ..+|+++|+++.+++.+++|++.+|+++ +
T Consensus 188 ~~~~~g~f~~~~~~~~~~~~~----~~~~VLDlg~G~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~n~~~n~~~~-~ 259 (382)
T 1wxx_A 188 AGQKTGAYLDQRENRLYMERF----RGERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGLGN-V 259 (382)
T ss_dssp TTSCCCCCGGGHHHHHHGGGC----CEEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTCTT-E
T ss_pred hcccCccccchHHHHHHHHhc----CCCeEEEeeeccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCCCC-c
Confidence 456778888887776665544 6789999999999999999986 4789999999999999999999999987 9
Q ss_pred EEEcCccccccccC---CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcC
Q 009708 390 RTIHADLRTFADNS---TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466 (528)
Q Consensus 390 ~~~~~D~~~~~~~~---~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTc 466 (528)
+++++|+.++.... ..+||+|++|||+.+.+ ...+......+.+++..+.++|+|||+|++++|
T Consensus 260 ~~~~~d~~~~~~~~~~~~~~fD~Ii~dpP~~~~~-------------~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 326 (382)
T 1wxx_A 260 RVLEANAFDLLRRLEKEGERFDLVVLDPPAFAKG-------------KKDVERAYRAYKEVNLRAIKLLKEGGILATASC 326 (382)
T ss_dssp EEEESCHHHHHHHHHHTTCCEEEEEECCCCSCCS-------------TTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred eEEECCHHHHHHHHHhcCCCeeEEEECCCCCCCC-------------hhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 99999998865421 46899999999995422 234566677888999999999999999999999
Q ss_pred CCCchhh--HHHHHHHH-hhCCCceEe
Q 009708 467 SIDPEEN--EERVEAFL-LRHPEFSID 490 (528)
Q Consensus 467 s~~~~En--e~~v~~~l-~~~~~~~~~ 490 (528)
+.+..++ .+.+...+ +....+++.
T Consensus 327 ~~~~~~~~~~~~i~~~~~~~g~~~~~i 353 (382)
T 1wxx_A 327 SHHMTEPLFYAMVAEAAQDAHRLLRVV 353 (382)
T ss_dssp CTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 9776654 45555444 444556554
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.9e-17 Score=159.25 Aligned_cols=166 Identities=15% Similarity=0.182 Sum_probs=122.6
Q ss_pred ecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccc
Q 009708 320 QDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 399 (528)
Q Consensus 320 Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~ 399 (528)
++..+.++..++...++.+|||+|||+|..+.++++.+++.++|+++|+++.+++.+++++++.|+.++++++++|+.+.
T Consensus 43 ~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 122 (223)
T 3duw_A 43 SPTQGKFLQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDS 122 (223)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHH
T ss_pred CHHHHHHHHHHHHhhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH
Confidence 34455566666555678899999999999999999987656899999999999999999999999988899999999775
Q ss_pred cccC----CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCc-----
Q 009708 400 ADNS----TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDP----- 470 (528)
Q Consensus 400 ~~~~----~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~----- 470 (528)
.... ..+||+|++|+++. . +..+++.+.++|||||+|++.++.+..
T Consensus 123 ~~~~~~~~~~~fD~v~~d~~~~------------------~-------~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~ 177 (223)
T 3duw_A 123 LQQIENEKYEPFDFIFIDADKQ------------------N-------NPAYFEWALKLSRPGTVIIGDNVVREGEVIDN 177 (223)
T ss_dssp HHHHHHTTCCCCSEEEECSCGG------------------G-------HHHHHHHHHHTCCTTCEEEEESCSGGGGGGCT
T ss_pred HHHHHhcCCCCcCEEEEcCCcH------------------H-------HHHHHHHHHHhcCCCcEEEEeCCCcCCcccCc
Confidence 4321 15799999998862 1 234688999999999999987765441
Q ss_pred ---hhhHHH---HHHHHhhCCCceEecCCCCCCCccccCCceEEEcCCCCCCCceEEEEEEe
Q 009708 471 ---EENEER---VEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLVR 526 (528)
Q Consensus 471 ---~Ene~~---v~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~~~dGff~a~l~k 526 (528)
.+.... +..++..++++....++ + +...+.|||++|+++|
T Consensus 178 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~p---------------~-~~~~~~dG~~~~~~~~ 223 (223)
T 3duw_A 178 TSNDPRVQGIRRFYELIAAEPRVSATALQ---------------T-VGSKGYDGFIMAVVKE 223 (223)
T ss_dssp TCCCHHHHHHHHHHHHHHHCTTEEEEEEE---------------E-EETTEEEEEEEEEEC-
T ss_pred cccchHHHHHHHHHHHHhhCCCeEEEEEe---------------c-cCCCCCCeeEEEEEeC
Confidence 122223 33445567776543221 1 1145679999999875
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.70 E-value=5.2e-17 Score=170.40 Aligned_cols=164 Identities=24% Similarity=0.215 Sum_probs=127.9
Q ss_pred cccccceeEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccE
Q 009708 310 GLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVI 389 (528)
Q Consensus 310 ~~~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i 389 (528)
..++.|.|..|.....++..++ +++++|||+|||+|++++.++.. +..+|+|+|+++.+++.+++|++.+|+++++
T Consensus 194 ~~~~tg~f~~~~~~~~~~~~~~--~~~~~VLDl~~G~G~~~~~la~~--g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v 269 (396)
T 2as0_A 194 RGQKTGFFLDQRENRLALEKWV--QPGDRVLDVFTYTGGFAIHAAIA--GADEVIGIDKSPRAIETAKENAKLNGVEDRM 269 (396)
T ss_dssp SSSSSCCCSTTHHHHHHHGGGC--CTTCEEEETTCTTTHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHTTCGGGE
T ss_pred cccccCccCCHHHHHHHHHHHh--hCCCeEEEecCCCCHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCccc
Confidence 3466788877777776666553 47889999999999999999975 4569999999999999999999999997569
Q ss_pred EEEcCcccccccc---CCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcC
Q 009708 390 RTIHADLRTFADN---STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466 (528)
Q Consensus 390 ~~~~~D~~~~~~~---~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTc 466 (528)
+++++|+.++... ...+||+|++|||+.+. +...+......+..++..+.++|+|||+|+|++|
T Consensus 270 ~~~~~d~~~~~~~~~~~~~~fD~Vi~dpP~~~~-------------~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 336 (396)
T 2as0_A 270 KFIVGSAFEEMEKLQKKGEKFDIVVLDPPAFVQ-------------HEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSC 336 (396)
T ss_dssp EEEESCHHHHHHHHHHTTCCEEEEEECCCCSCS-------------SGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEEC
T ss_pred eEEECCHHHHHHHHHhhCCCCCEEEECCCCCCC-------------CHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 9999999876542 14689999999998542 2245566677788899999999999999999999
Q ss_pred CCCchh--hHHHHHHHHhh-CCCceEe
Q 009708 467 SIDPEE--NEERVEAFLLR-HPEFSID 490 (528)
Q Consensus 467 s~~~~E--ne~~v~~~l~~-~~~~~~~ 490 (528)
+.+..+ .++.+...... ...+++.
T Consensus 337 ~~~~~~~~~~~~v~~~~~~~~~~~~~i 363 (396)
T 2as0_A 337 SQHVDLQMFKDMIIAAGAKAGKFLKML 363 (396)
T ss_dssp CTTSCHHHHHHHHHHHHHHTTEEEEES
T ss_pred CCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 976544 34555544433 3344444
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.70 E-value=6.6e-17 Score=157.12 Aligned_cols=132 Identities=18% Similarity=0.183 Sum_probs=102.4
Q ss_pred CCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc--CCCCCCE
Q 009708 332 DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN--STVKCDK 409 (528)
Q Consensus 332 ~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~--~~~~fD~ 409 (528)
.+++|++|||+|||||++|.++|+.+++.|+|+|+|+++.+++.+.+.++.. .| +.++++|+...... ..++||+
T Consensus 73 ~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r--~n-v~~i~~Da~~~~~~~~~~~~~D~ 149 (232)
T 3id6_C 73 PIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR--PN-IFPLLADARFPQSYKSVVENVDV 149 (232)
T ss_dssp SCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC--TT-EEEEECCTTCGGGTTTTCCCEEE
T ss_pred CCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CC-eEEEEcccccchhhhccccceEE
Confidence 3789999999999999999999999888899999999999987766665543 34 88999999865321 2468999
Q ss_pred EEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHH-HHHHhccCcCCCEEEEE---cC---CCCchhhHHHHHHHHh
Q 009708 410 VLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDEL-LDAASLLVKPGGVLVYS---TC---SIDPEENEERVEAFLL 482 (528)
Q Consensus 410 Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~l-L~~a~~~LkpGG~Lvys---Tc---s~~~~Ene~~v~~~l~ 482 (528)
|++|.+. | .|.++ +..+.++|||||+|+++ +| +..++||.+.+.++|+
T Consensus 150 I~~d~a~---------~----------------~~~~il~~~~~~~LkpGG~lvisik~~~~d~t~~~~e~~~~~~~~L~ 204 (232)
T 3id6_C 150 LYVDIAQ---------P----------------DQTDIAIYNAKFFLKVNGDMLLVIKARSIDVTKDPKEIYKTEVEKLE 204 (232)
T ss_dssp EEECCCC---------T----------------THHHHHHHHHHHHEEEEEEEEEEEC-------CCSSSSTTHHHHHHH
T ss_pred EEecCCC---------h----------------hHHHHHHHHHHHhCCCCeEEEEEEccCCcccCCCHHHHHHHHHHHHH
Confidence 9999764 1 12333 44556699999999976 88 8999999988889999
Q ss_pred hCCCceEecC
Q 009708 483 RHPEFSIDPA 492 (528)
Q Consensus 483 ~~~~~~~~~~ 492 (528)
+++ |++...
T Consensus 205 ~~g-f~~~~~ 213 (232)
T 3id6_C 205 NSN-FETIQI 213 (232)
T ss_dssp HTT-EEEEEE
T ss_pred HCC-CEEEEE
Confidence 884 877653
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.7e-17 Score=172.64 Aligned_cols=164 Identities=16% Similarity=0.128 Sum_probs=125.8
Q ss_pred ccccccceeEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCC-Cc
Q 009708 309 AGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQV-NS 387 (528)
Q Consensus 309 ~~~~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~-~~ 387 (528)
...++.|.|..|.....++..+ .+|.+|||+|||+|+++++++.. +..+|+|+|+|+.+++.+++|++.+|+ ++
T Consensus 197 ~~~~~tgff~~~~~~~~~l~~~---~~~~~VLDl~cG~G~~sl~la~~--g~~~V~~vD~s~~al~~a~~n~~~ngl~~~ 271 (396)
T 3c0k_A 197 QHGHKTGYYLDQRDSRLATRRY---VENKRVLNCFSYTGGFAVSALMG--GCSQVVSVDTSQEALDIARQNVELNKLDLS 271 (396)
T ss_dssp TTSSTTSSCGGGHHHHHHHHHH---CTTCEEEEESCTTCSHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHTTCCGG
T ss_pred cccccCCcCcCHHHHHHHHHHh---hCCCeEEEeeccCCHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHcCCCcc
Confidence 3457789998888887777776 46889999999999999999985 356999999999999999999999999 64
Q ss_pred cEEEEcCccccccccC---CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 388 VIRTIHADLRTFADNS---TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 388 ~i~~~~~D~~~~~~~~---~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
+++++++|+.++.... ..+||+|++|||+.+.+- . .+......+.+++..+.++|+|||+|+++
T Consensus 272 ~v~~~~~D~~~~~~~~~~~~~~fD~Ii~dpP~~~~~~-----~--------~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 338 (396)
T 3c0k_A 272 KAEFVRDDVFKLLRTYRDRGEKFDVIVMDPPKFVENK-----S--------QLMGACRGYKDINMLAIQLLNEGGILLTF 338 (396)
T ss_dssp GEEEEESCHHHHHHHHHHTTCCEEEEEECCSSTTTCS-----S--------SSSCCCTHHHHHHHHHHHTEEEEEEEEEE
T ss_pred ceEEEECCHHHHHHHHHhcCCCCCEEEECCCCCCCCh-----h--------HHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 5999999998865421 368999999999954321 0 01111223556799999999999999999
Q ss_pred cCCCCch--hhHHHHHHHH-hhCCCceEe
Q 009708 465 TCSIDPE--ENEERVEAFL-LRHPEFSID 490 (528)
Q Consensus 465 Tcs~~~~--Ene~~v~~~l-~~~~~~~~~ 490 (528)
+|+.... ++.+.+...+ +....+++.
T Consensus 339 ~~~~~~~~~~~~~~i~~~~~~~g~~~~~i 367 (396)
T 3c0k_A 339 SCSGLMTSDLFQKIIADAAIDAGRDVQFI 367 (396)
T ss_dssp ECCTTCCHHHHHHHHHHHHHHHTCCEEEE
T ss_pred eCCCcCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 9997654 5566676444 444455544
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=7.7e-17 Score=160.59 Aligned_cols=159 Identities=12% Similarity=0.082 Sum_probs=116.0
Q ss_pred cceeEeecchHHHHHHhcCC--CCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEE
Q 009708 314 EGLCAVQDESAGLVVAVVDP--QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRT 391 (528)
Q Consensus 314 ~G~~~~Qd~~s~l~~~~l~~--~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~ 391 (528)
.|.++.+..+..++..++.. .++.+|||+|||+|..+..++... +..+|+|+|+|+.+++.+++|++.+|+++ +++
T Consensus 86 ~~~~ipr~~te~l~~~~l~~~~~~~~~vLDlG~GsG~~~~~la~~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~-v~~ 163 (276)
T 2b3t_A 86 PATLIPRPDTECLVEQALARLPEQPCRILDLGTGTGAIALALASER-PDCEIIAVDRMPDAVSLAQRNAQHLAIKN-IHI 163 (276)
T ss_dssp TTSCCCCTTHHHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHC-TTSEEEEECSSHHHHHHHHHHHHHHTCCS-EEE
T ss_pred CCCcccCchHHHHHHHHHHhcccCCCEEEEecCCccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCc-eEE
Confidence 44444445454444443321 567899999999999999999875 45799999999999999999999999885 999
Q ss_pred EcCccccccccCCCCCCEEEEcCCCCCCc-------cccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 392 IHADLRTFADNSTVKCDKVLLDAPCSGLG-------VLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 392 ~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G-------~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
+++|+..... .++||+|++||||.+.+ ++...|...+.-. ......+..+++.+.++|||||++++.
T Consensus 164 ~~~d~~~~~~--~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~----~~g~~~~~~~l~~~~~~LkpgG~l~~~ 237 (276)
T 2b3t_A 164 LQSDWFSALA--GQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAA----DSGMADIVHIIEQSRNALVSGGFLLLE 237 (276)
T ss_dssp ECCSTTGGGT--TCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCH----HHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred EEcchhhhcc--cCCccEEEECCCCCCccccccChhhhhcCcHHHHcCC----CcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 9999987542 36899999999998763 3333444333211 222345577899999999999999987
Q ss_pred cCCCCchhhHHHHHHHHhhC
Q 009708 465 TCSIDPEENEERVEAFLLRH 484 (528)
Q Consensus 465 Tcs~~~~Ene~~v~~~l~~~ 484 (528)
.+... .+.+..++.++
T Consensus 238 ~~~~~----~~~~~~~l~~~ 253 (276)
T 2b3t_A 238 HGWQQ----GEAVRQAFILA 253 (276)
T ss_dssp CCSSC----HHHHHHHHHHT
T ss_pred ECchH----HHHHHHHHHHC
Confidence 65432 33456667664
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=4.8e-17 Score=182.14 Aligned_cols=152 Identities=16% Similarity=0.258 Sum_probs=121.0
Q ss_pred cccccceeEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCC-cc
Q 009708 310 GLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN-SV 388 (528)
Q Consensus 310 ~~~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~-~~ 388 (528)
..++.|.|..|.....++.... +|.+|||+|||+|+++++++.. +..+|+++|+|+.+++.+++|++.+|++ ++
T Consensus 517 ~~~~tG~f~d~r~~r~~l~~~~---~g~~VLDlg~GtG~~sl~aa~~--ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~ 591 (703)
T 3v97_A 517 DYLDTGLFLDHRIARRMLGQMS---KGKDFLNLFSYTGSATVHAGLG--GARSTTTVDMSRTYLEWAERNLRLNGLTGRA 591 (703)
T ss_dssp SSSSCSCCGGGHHHHHHHHHHC---TTCEEEEESCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHTTCCSTT
T ss_pred ccccCCCcccHHHHHHHHHHhc---CCCcEEEeeechhHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCccc
Confidence 4567899999999888887764 5889999999999999999873 4568999999999999999999999997 46
Q ss_pred EEEEcCccccccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCC
Q 009708 389 IRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 468 (528)
Q Consensus 389 i~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~ 468 (528)
++++++|+.++.....++||+|++||||.+.+. . ..++......+.+++..+.++|+|||+|++++|+-
T Consensus 592 v~~i~~D~~~~l~~~~~~fD~Ii~DPP~f~~~~---~--------~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~~ 660 (703)
T 3v97_A 592 HRLIQADCLAWLREANEQFDLIFIDPPTFSNSK---R--------MEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKR 660 (703)
T ss_dssp EEEEESCHHHHHHHCCCCEEEEEECCCSBC------------------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECCT
T ss_pred eEEEecCHHHHHHhcCCCccEEEECCccccCCc---c--------chhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCc
Confidence 999999999865544578999999999965322 0 01122344667889999999999999999999995
Q ss_pred CchhhHHHH
Q 009708 469 DPEENEERV 477 (528)
Q Consensus 469 ~~~Ene~~v 477 (528)
....+++.+
T Consensus 661 ~~~~~~~~l 669 (703)
T 3v97_A 661 GFRMDLDGL 669 (703)
T ss_dssp TCCCCHHHH
T ss_pred ccccCHHHH
Confidence 544444433
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=7e-17 Score=168.83 Aligned_cols=158 Identities=11% Similarity=0.151 Sum_probs=120.5
Q ss_pred cccccceeEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCc-c
Q 009708 310 GLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS-V 388 (528)
Q Consensus 310 ~~~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~-~ 388 (528)
..++.|.|..|.....++..++ .+|.+|||+|||+|++++.+|.. +..+|+++|+|+.+++.+++|++.+|+++ +
T Consensus 189 ~~~~t~ff~~~~~~~~~~~~~~--~~~~~VLDl~cGtG~~sl~la~~--ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~ 264 (385)
T 2b78_A 189 DGLMTGIFLDQRQVRNELINGS--AAGKTVLNLFSYTAAFSVAAAMG--GAMATTSVDLAKRSRALSLAHFEANHLDMAN 264 (385)
T ss_dssp SSSCCSSCGGGHHHHHHHHHTT--TBTCEEEEETCTTTHHHHHHHHT--TBSEEEEEESCTTHHHHHHHHHHHTTCCCTT
T ss_pred ccccCCcCCcHHHHHHHHHHHh--cCCCeEEEEeeccCHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHcCCCccc
Confidence 3456788877777777777665 56889999999999999999974 34589999999999999999999999974 5
Q ss_pred EEEEcCccccccccC---CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 389 IRTIHADLRTFADNS---TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 389 i~~~~~D~~~~~~~~---~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
++++++|+.++.... ..+||+|++|||+.+.+. .........+.+++..+.++|+|||+|++++
T Consensus 265 v~~~~~D~~~~l~~~~~~~~~fD~Ii~DPP~~~~~~-------------~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~ 331 (385)
T 2b78_A 265 HQLVVMDVFDYFKYARRHHLTYDIIIIDPPSFARNK-------------KEVFSVSKDYHKLIRQGLEILSENGLIIAST 331 (385)
T ss_dssp EEEEESCHHHHHHHHHHTTCCEEEEEECCCCC------------------CCCCHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred eEEEECCHHHHHHHHHHhCCCccEEEECCCCCCCCh-------------hhHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 999999998754321 358999999999964221 0112233456778999999999999999999
Q ss_pred CCCCc--hhhHHHHHHHHhhC
Q 009708 466 CSIDP--EENEERVEAFLLRH 484 (528)
Q Consensus 466 cs~~~--~Ene~~v~~~l~~~ 484 (528)
|+... .+..+.+.......
T Consensus 332 ~~~~~~~~~~~~~i~~~~~~~ 352 (385)
T 2b78_A 332 NAANMTVSQFKKQIEKGFGKQ 352 (385)
T ss_dssp CCTTSCHHHHHHHHHHHHTTC
T ss_pred CCCcCCHHHHHHHHHHHHHHc
Confidence 98664 44455665555544
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.67 E-value=3.9e-17 Score=159.94 Aligned_cols=127 Identities=17% Similarity=0.183 Sum_probs=104.5
Q ss_pred eEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcc
Q 009708 317 CAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL 396 (528)
Q Consensus 317 ~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~ 396 (528)
+.++...+.++..++...++.+|||+|||+|..++.+|+.++++++|+++|+++.+++.++++++..|+.++++++++|+
T Consensus 42 ~~i~~~~~~~l~~l~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda 121 (242)
T 3r3h_A 42 MQVAPEQAQFMQMLIRLTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPA 121 (242)
T ss_dssp TSCCHHHHHHHHHHHHHHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCH
T ss_pred CccCHHHHHHHHHHHhhcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCH
Confidence 44556666777766666667899999999999999999987667899999999999999999999999987799999999
Q ss_pred ccccccC-----CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCC
Q 009708 397 RTFADNS-----TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 468 (528)
Q Consensus 397 ~~~~~~~-----~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~ 468 (528)
.+..... .++||+|++|++.. . +..+++.+.++|||||+|++.++.+
T Consensus 122 ~~~l~~~~~~~~~~~fD~V~~d~~~~------------------~-------~~~~l~~~~~~LkpGG~lv~d~~~~ 173 (242)
T 3r3h_A 122 LDTLHSLLNEGGEHQFDFIFIDADKT------------------N-------YLNYYELALKLVTPKGLIAIDNIFW 173 (242)
T ss_dssp HHHHHHHHHHHCSSCEEEEEEESCGG------------------G-------HHHHHHHHHHHEEEEEEEEEECSSS
T ss_pred HHHHHHHhhccCCCCEeEEEEcCChH------------------H-------hHHHHHHHHHhcCCCeEEEEECCcc
Confidence 8765432 36899999997741 1 1235888999999999999876654
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=8.1e-17 Score=161.49 Aligned_cols=216 Identities=11% Similarity=0.063 Sum_probs=137.2
Q ss_pred hHHHHHHHHHHh--CHHHHHHHHHhcCCCCCeEEEEcC--CCCCCHHHHHHHHhhcCCCCCceecccCCceEEeeCCccc
Q 009708 230 PVWMVRRWTKYL--GQEEAIKLMVWNNSDPSFSLRANS--RKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQN 305 (528)
Q Consensus 230 P~w~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~rvn~--~k~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (528)
-.|..++|.+.+ +..+++.++......++.+++.+. ....+.+.+.+.+.......|.. ++-.. ..
T Consensus 20 ~~~~~~~l~~~~~~~~~~a~~ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~p~~---yi~g~-------~~ 89 (284)
T 1nv8_A 20 IRDCSGKLEGVTETSVLEVLLIVSRVLGIRKEDLFLKDLGVSPTEEKRILELVEKRASGYPLH---YILGE-------KE 89 (284)
T ss_dssp HHHHHHHTTTTCSCHHHHHHHHHHHHHTCCGGGGCCSSCCCCHHHHHHHHHHHHHHHTTCCHH---HHHTE-------EE
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHcCCCHHHHHhccccccccCHHHHHHHHHHHHCCCCCe---EEeee-------eE
Confidence 356777776655 455688888888777777777776 32122344444444322222211 10000 00
Q ss_pred hhcccc-cccceeEeecchHHHHHHhc---CCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHH
Q 009708 306 VIQAGL-LKEGLCAVQDESAGLVVAVV---DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAK 381 (528)
Q Consensus 306 ~~~~~~-~~~G~~~~Qd~~s~l~~~~l---~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~ 381 (528)
...... +..|.++.+..+..++..++ ...++.+|||+|||+|..++.++.. +..+|+|+|+|+.+++.+++|++
T Consensus 90 f~~~~~~v~~~~lipr~~te~lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~--~~~~v~~vDis~~al~~A~~n~~ 167 (284)
T 1nv8_A 90 FMGLSFLVEEGVFVPRPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKF--SDAIVFATDVSSKAVEIARKNAE 167 (284)
T ss_dssp ETTEEEECCTTSCCCCTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHH--SSCEEEEEESCHHHHHHHHHHHH
T ss_pred ECCeEEEeCCCceecChhHHHHHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHH
Confidence 001111 12344444444444433332 2336679999999999999999987 46899999999999999999999
Q ss_pred HcCCCccEEEEcCccccccccCCCCC---CEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHh-ccCcC
Q 009708 382 LHQVNSVIRTIHADLRTFADNSTVKC---DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAAS-LLVKP 457 (528)
Q Consensus 382 ~~g~~~~i~~~~~D~~~~~~~~~~~f---D~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~-~~Lkp 457 (528)
.+|+.++++++++|+..... ++| |+|++||||.+.+. ...++++|.. ...+. .......+++.+. +.++|
T Consensus 168 ~~~l~~~v~~~~~D~~~~~~---~~f~~~D~IvsnPPyi~~~~-~l~~~v~~ep-~~al~-~~~dgl~~~~~i~~~~l~p 241 (284)
T 1nv8_A 168 RHGVSDRFFVRKGEFLEPFK---EKFASIEMILSNPPYVKSSA-HLPKDVLFEP-PEALF-GGEDGLDFYREFFGRYDTS 241 (284)
T ss_dssp HTTCTTSEEEEESSTTGGGG---GGTTTCCEEEECCCCBCGGG-SCTTSCCCSC-HHHHB-CTTTSCHHHHHHHHHCCCT
T ss_pred HcCCCCceEEEECcchhhcc---cccCCCCEEEEcCCCCCccc-ccChhhccCc-HHHhc-CCCcHHHHHHHHHHhcCCC
Confidence 99998779999999987543 368 99999999988776 4445544211 01000 0000114578888 99999
Q ss_pred CCEEEE
Q 009708 458 GGVLVY 463 (528)
Q Consensus 458 GG~Lvy 463 (528)
||.|++
T Consensus 242 gG~l~~ 247 (284)
T 1nv8_A 242 GKIVLM 247 (284)
T ss_dssp TCEEEE
T ss_pred CCEEEE
Confidence 999995
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.7e-14 Score=150.07 Aligned_cols=251 Identities=12% Similarity=0.146 Sum_probs=153.3
Q ss_pred HHHHHHHHHHhcC-CCchhhHHHHHHHHHhhcCCCCCCCCcCcCCcHHHHHHHHhhhcChHHHHHHHHHHhCHHHHHHHH
Q 009708 172 VDENVRLAKVALR-PGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLM 250 (528)
Q Consensus 172 inEaV~lak~~~~-~~~~~fVN~VL~~~~r~~~~~~~~~~~~~~~~~~~~~~ls~~~s~P~w~~~~~~~~~g~~~~~~~~ 250 (528)
.|+.++.++.-.+ +...+++|+||+.+ +.. . ...+|+..+++|+|.+++|.+.++.. .++
T Consensus 25 ~~~~~~~~~~~~~l~~~~~~~~~ll~~L-~~~------~---------t~~eLa~~~g~~~~~v~~~L~~l~~~---gll 85 (373)
T 2qm3_A 25 MKEIVERVKTKTKIPVYERSVENVLSAV-LAS------D---------DIWRIVDLSEEPLPLVVAILESLNEL---GYV 85 (373)
T ss_dssp HHHHHHHHHTTCSSCCCHHHHHHHHHHH-HHC------S---------CHHHHHHHHTSCHHHHHHHHHHHHHT---TSE
T ss_pred HHHHHHHHHHhcCccHhHHHHHHHHHHh-cCC------C---------CHHHHHHHhCCChHHHHHHHHHHhhC---CcE
Confidence 4444444442211 23478999999999 421 1 13468889999999999999988632 222
Q ss_pred HhcCCCCCeEEEEcCCCCCCHHHHHHHHhhcCCCCCceec-ccCCc-eEEee-------------CCccchhcccccccc
Q 009708 251 VWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELS-LHLDE-FIRVK-------------TGLQNVIQAGLLKEG 315 (528)
Q Consensus 251 ~~~~~~~~~~~rvn~~k~~~~~~~~~~L~~~~~~~~~~~~-~~~~~-~~~~~-------------~~~~~~~~~~~~~~G 315 (528)
+..+ . +|.+.. .+.+... .+........ ..+.+ .+... .+.+ .....|.++
T Consensus 86 ~~~~---~--~~lt~~----~~~~l~~---~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~ 151 (373)
T 2qm3_A 86 TFED---G--VKLTEK----GEELVAE---YGIGKRYDFTCPHCQGKTVDLQAFADLLEQFREIVKDRP--EPLHEFDQA 151 (373)
T ss_dssp ECSS---S--SEECHH----HHHHHHH---HTCCCCCC------------CGGGHHHHHHHHHHHTTCC--CCCGGGTCC
T ss_pred EECC---C--EEECHH----HHHHHHh---cCccccccccchhhcCCCcchhhhHHHHHHHHHHHhcCC--ccchhcCCe
Confidence 2111 1 444321 1233322 2221100000 00000 00000 0000 011234555
Q ss_pred eeEeecchHHHHHHh-cCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcC
Q 009708 316 LCAVQDESAGLVVAV-VDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA 394 (528)
Q Consensus 316 ~~~~Qd~~s~l~~~~-l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~ 394 (528)
+...|+..+.++... ....+|.+|||+| |+|..+..++.. ++.++|+++|+++.+++.+++|++++|+. +++++++
T Consensus 152 ~~~~~~~~~~~l~~~~~~~~~~~~VLDlG-G~G~~~~~la~~-~~~~~v~~vDi~~~~l~~a~~~~~~~g~~-~v~~~~~ 228 (373)
T 2qm3_A 152 YVTPETTVARVILMHTRGDLENKDIFVLG-DDDLTSIALMLS-GLPKRIAVLDIDERLTKFIEKAANEIGYE-DIEIFTF 228 (373)
T ss_dssp CBCHHHHHHHHHHHHHTTCSTTCEEEEES-CTTCHHHHHHHH-TCCSEEEEECSCHHHHHHHHHHHHHHTCC-CEEEECC
T ss_pred ecCHHHHHHHHHHHhhcCCCCCCEEEEEC-CCCHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCCC-CEEEEEC
Confidence 666666665555332 2234688999999 999999999875 44479999999999999999999999987 5999999
Q ss_pred cccc-ccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCC-EEEEEcCC--CCc
Q 009708 395 DLRT-FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG-VLVYSTCS--IDP 470 (528)
Q Consensus 395 D~~~-~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG-~LvysTcs--~~~ 470 (528)
|+.. ++....++||+|++||||.. .. ...++..+.+.||||| .++|++|+ -.+
T Consensus 229 D~~~~l~~~~~~~fD~Vi~~~p~~~----------------~~-------~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~ 285 (373)
T 2qm3_A 229 DLRKPLPDYALHKFDTFITDPPETL----------------EA-------IRAFVGRGIATLKGPRCAGYFGITRRESSL 285 (373)
T ss_dssp CTTSCCCTTTSSCBSEEEECCCSSH----------------HH-------HHHHHHHHHHTBCSTTCEEEEEECTTTCCH
T ss_pred hhhhhchhhccCCccEEEECCCCch----------------HH-------HHHHHHHHHHHcccCCeEEEEEEecCcCCH
Confidence 9988 43222358999999999842 11 1567999999999999 55888876 222
Q ss_pred hhhHHHHHHHHh
Q 009708 471 EENEERVEAFLL 482 (528)
Q Consensus 471 ~Ene~~v~~~l~ 482 (528)
.+. ..+..++.
T Consensus 286 ~~~-~~~~~~l~ 296 (373)
T 2qm3_A 286 DKW-REIQKLLL 296 (373)
T ss_dssp HHH-HHHHHHHH
T ss_pred HHH-HHHHHHHH
Confidence 111 44566665
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.65 E-value=6.4e-16 Score=149.71 Aligned_cols=131 Identities=16% Similarity=0.227 Sum_probs=110.0
Q ss_pred ccceeEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEE
Q 009708 313 KEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTI 392 (528)
Q Consensus 313 ~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~ 392 (528)
..|..++|...+.++..++...++.+|||+|||+|..+..+++.++ .++|+++|+++.+++.++++++..|+.++++++
T Consensus 32 ~~~~~~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~ 110 (233)
T 2gpy_A 32 EQQVPIMDLLGMESLLHLLKMAAPARILEIGTAIGYSAIRMAQALP-EATIVSIERDERRYEEAHKHVKALGLESRIELL 110 (233)
T ss_dssp HTTCCCCCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHCT-TCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEE
T ss_pred HcCCCCcCHHHHHHHHHHHhccCCCEEEEecCCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEE
Confidence 4566778888888888887777889999999999999999999864 589999999999999999999999997779999
Q ss_pred cCccccccccC--CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCC
Q 009708 393 HADLRTFADNS--TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSID 469 (528)
Q Consensus 393 ~~D~~~~~~~~--~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~ 469 (528)
++|+....+.. .++||+|++|+++. .+..+++.+.++|+|||+|++.++.+.
T Consensus 111 ~~d~~~~~~~~~~~~~fD~I~~~~~~~-------------------------~~~~~l~~~~~~L~pgG~lv~~~~~~~ 164 (233)
T 2gpy_A 111 FGDALQLGEKLELYPLFDVLFIDAAKG-------------------------QYRRFFDMYSPMVRPGGLILSDNVLFR 164 (233)
T ss_dssp CSCGGGSHHHHTTSCCEEEEEEEGGGS-------------------------CHHHHHHHHGGGEEEEEEEEEETTTC-
T ss_pred ECCHHHHHHhcccCCCccEEEECCCHH-------------------------HHHHHHHHHHHHcCCCeEEEEEcCCcC
Confidence 99998753322 36899999998873 124568999999999999999876543
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.65 E-value=2.3e-16 Score=161.59 Aligned_cols=145 Identities=21% Similarity=0.251 Sum_probs=112.4
Q ss_pred cccccceeEeecchHHHHHHhcC-CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCc-
Q 009708 310 GLLKEGLCAVQDESAGLVVAVVD-PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS- 387 (528)
Q Consensus 310 ~~~~~G~~~~Qd~~s~l~~~~l~-~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~- 387 (528)
..++.|+|..|......+...+. ..++.+|||+|||+|+.++.++.. +.+|+++|+|+.+++.+++|++.+|+++
T Consensus 127 ~~~~tg~f~dq~~~~~~l~~~~~~~~~~~~VLDlgcGtG~~sl~la~~---ga~V~~VD~s~~al~~a~~n~~~~gl~~~ 203 (332)
T 2igt_A 127 AFRHVGVFPEQIVHWEWLKNAVETADRPLKVLNLFGYTGVASLVAAAA---GAEVTHVDASKKAIGWAKENQVLAGLEQA 203 (332)
T ss_dssp SSSCCSCCGGGHHHHHHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHT---TCEEEEECSCHHHHHHHHHHHHHHTCTTS
T ss_pred ccccceechHHHHHHHHHHHHHHhcCCCCcEEEcccccCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCCCcc
Confidence 44667888888887766766654 456789999999999999999984 3499999999999999999999999976
Q ss_pred cEEEEcCccccccccC---CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCE-EEE
Q 009708 388 VIRTIHADLRTFADNS---TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGV-LVY 463 (528)
Q Consensus 388 ~i~~~~~D~~~~~~~~---~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~-Lvy 463 (528)
+++++++|+.++.... ..+||+|++||||.+.+.- .+ .| .....+..++..+.++|||||+ ++.
T Consensus 204 ~v~~i~~D~~~~l~~~~~~~~~fD~Ii~dPP~~~~~~~---~~-~~--------~~~~~~~~ll~~~~~~LkpgG~lli~ 271 (332)
T 2igt_A 204 PIRWICEDAMKFIQREERRGSTYDIILTDPPKFGRGTH---GE-VW--------QLFDHLPLMLDICREILSPKALGLVL 271 (332)
T ss_dssp CEEEECSCHHHHHHHHHHHTCCBSEEEECCCSEEECTT---CC-EE--------EHHHHHHHHHHHHHHTBCTTCCEEEE
T ss_pred ceEEEECcHHHHHHHHHhcCCCceEEEECCccccCCch---HH-HH--------HHHHHHHHHHHHHHHhcCcCcEEEEE
Confidence 4899999998865421 3689999999999654310 00 01 1233456789999999999998 556
Q ss_pred EcCCCC
Q 009708 464 STCSID 469 (528)
Q Consensus 464 sTcs~~ 469 (528)
++|+..
T Consensus 272 ~~~~~~ 277 (332)
T 2igt_A 272 TAYSIR 277 (332)
T ss_dssp EECCTT
T ss_pred ECCCCC
Confidence 667755
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.65 E-value=4.2e-16 Score=152.03 Aligned_cols=126 Identities=20% Similarity=0.166 Sum_probs=103.0
Q ss_pred eecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccc
Q 009708 319 VQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 398 (528)
Q Consensus 319 ~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~ 398 (528)
++.....++..++...++.+|||+|||+|..++.+++.+++.++|+++|+++.+++.+++++++.|+.++++++++|+.+
T Consensus 54 ~~~~~~~~l~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~ 133 (237)
T 3c3y_A 54 TSPLAGQLMSFVLKLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAML 133 (237)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHH
T ss_pred cCHHHHHHHHHHHHhhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH
Confidence 44455556655555556779999999999999999998876789999999999999999999999998789999999987
Q ss_pred ccccC------CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCC
Q 009708 399 FADNS------TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSID 469 (528)
Q Consensus 399 ~~~~~------~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~ 469 (528)
..+.. .++||+|++|+++. .+..+++.+.++|+|||+|++.+|.+.
T Consensus 134 ~l~~l~~~~~~~~~fD~I~~d~~~~-------------------------~~~~~l~~~~~~L~pGG~lv~d~~~~~ 185 (237)
T 3c3y_A 134 ALDNLLQGQESEGSYDFGFVDADKP-------------------------NYIKYHERLMKLVKVGGIVAYDNTLWG 185 (237)
T ss_dssp HHHHHHHSTTCTTCEEEEEECSCGG-------------------------GHHHHHHHHHHHEEEEEEEEEECTTGG
T ss_pred HHHHHHhccCCCCCcCEEEECCchH-------------------------HHHHHHHHHHHhcCCCeEEEEecCCcC
Confidence 54322 36899999997752 124568889999999999999987543
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.65 E-value=2e-17 Score=164.81 Aligned_cols=203 Identities=16% Similarity=0.218 Sum_probs=122.4
Q ss_pred HHHhcCCCCCeEEEEcCCCCCCHHHH-HHHHhhcCCCCCceecccCCceEEeeCCccchhcccccccceeEeecchHHHH
Q 009708 249 LMVWNNSDPSFSLRANSRKGVTRADL-VMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLV 327 (528)
Q Consensus 249 ~~~~~~~~~~~~~rvn~~k~~~~~~~-~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~Qd~~s~l~ 327 (528)
++.+.++.++++.|+|+.+ .+.+++ .+.|...+++. ... .....+....... ......+..+...+++..+.++
T Consensus 28 i~~~~~~~~~~~~r~~~~~-~~~~~~~~~~l~g~~~g~--~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 102 (275)
T 1yb2_A 28 ILVSEDEYGKFDESTNSIL-VKGKMHHLGISRVIEPGD--ELI-VSGKSFIVSDFSP-MYFGRVIRRNTQIISEIDASYI 102 (275)
T ss_dssp EEECSSCCEEEETTTTEEE-C-CCEEECC-CCCCCTTC--EEE-ETTEEEEEECCCG-GGHHHHC---------------
T ss_pred EEEecCCCCceecccccee-ccCCccchhheeCCCCCc--EEE-ECCeEEEEeCCCH-HHHHhhccccccccChhhHHHH
Confidence 4456788888898888553 122111 12222222211 111 1222222111111 1122345566777778788888
Q ss_pred HHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHc-CCCccEEEEcCccccccccCCCC
Q 009708 328 VAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLH-QVNSVIRTIHADLRTFADNSTVK 406 (528)
Q Consensus 328 ~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~-g~~~~i~~~~~D~~~~~~~~~~~ 406 (528)
...+++.++.+|||+|||+|..+..+++.+.+.++|+++|+++.+++.+++|++.+ |.++ ++++++|+.+... .++
T Consensus 103 ~~~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~-v~~~~~d~~~~~~--~~~ 179 (275)
T 1yb2_A 103 IMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGN-VRTSRSDIADFIS--DQM 179 (275)
T ss_dssp ---CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTT-EEEECSCTTTCCC--SCC
T ss_pred HHHcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCc-EEEEECchhccCc--CCC
Confidence 88889999999999999999999999987666789999999999999999999998 8664 8999999987332 367
Q ss_pred CCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHHHhhCCC
Q 009708 407 CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPE 486 (528)
Q Consensus 407 fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~l~~~~~ 486 (528)
||+|++|+|.. ..+++.+.++|||||+|++++|+... .+.+...+.+. +
T Consensus 180 fD~Vi~~~~~~---------------------------~~~l~~~~~~LkpgG~l~i~~~~~~~---~~~~~~~l~~~-G 228 (275)
T 1yb2_A 180 YDAVIADIPDP---------------------------WNHVQKIASMMKPGSVATFYLPNFDQ---SEKTVLSLSAS-G 228 (275)
T ss_dssp EEEEEECCSCG---------------------------GGSHHHHHHTEEEEEEEEEEESSHHH---HHHHHHHSGGG-T
T ss_pred ccEEEEcCcCH---------------------------HHHHHHHHHHcCCCCEEEEEeCCHHH---HHHHHHHHHHC-C
Confidence 99999987741 13588999999999999999886532 22333445443 4
Q ss_pred ceEe
Q 009708 487 FSID 490 (528)
Q Consensus 487 ~~~~ 490 (528)
|...
T Consensus 229 f~~~ 232 (275)
T 1yb2_A 229 MHHL 232 (275)
T ss_dssp EEEE
T ss_pred CeEE
Confidence 5443
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.63 E-value=6.3e-15 Score=152.17 Aligned_cols=146 Identities=28% Similarity=0.355 Sum_probs=115.4
Q ss_pred cchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccc
Q 009708 321 DESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400 (528)
Q Consensus 321 d~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~ 400 (528)
..-+..+..++...++.+|||+|||+|.+++.++...++..+|+|+|+++.+++.+++|++.+|++ .++++++|+.++.
T Consensus 189 ~~la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~-~i~~~~~D~~~~~ 267 (354)
T 3tma_A 189 PVLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLS-WIRFLRADARHLP 267 (354)
T ss_dssp HHHHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCT-TCEEEECCGGGGG
T ss_pred HHHHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCC-ceEEEeCChhhCc
Confidence 334555666777888999999999999999999987534679999999999999999999999998 5999999999876
Q ss_pred ccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHH
Q 009708 401 DNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAF 480 (528)
Q Consensus 401 ~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~ 480 (528)
... ..||+|++||||.- .......+..++..+++.+.++|||||++++.||. ++.+..+
T Consensus 268 ~~~-~~~D~Ii~npPyg~--------------r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~------~~~~~~~ 326 (354)
T 3tma_A 268 RFF-PEVDRILANPPHGL--------------RLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLR------PALLKRA 326 (354)
T ss_dssp GTC-CCCSEEEECCCSCC------------------CHHHHHHHHHHHHHHHHTSCTTCEEEEEESC------HHHHHHH
T ss_pred ccc-CCCCEEEECCCCcC--------------ccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCC------HHHHHHH
Confidence 432 46899999999931 01122445667889999999999999999999883 4455555
Q ss_pred HhhCCCceEe
Q 009708 481 LLRHPEFSID 490 (528)
Q Consensus 481 l~~~~~~~~~ 490 (528)
++ .+++..
T Consensus 327 ~~--~g~~~~ 334 (354)
T 3tma_A 327 LP--PGFALR 334 (354)
T ss_dssp CC--TTEEEE
T ss_pred hh--cCcEEE
Confidence 55 556553
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.6e-15 Score=146.45 Aligned_cols=137 Identities=15% Similarity=0.168 Sum_probs=107.0
Q ss_pred hcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCC-ccEEEEcCccccccccC-CCCC
Q 009708 330 VVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN-SVIRTIHADLRTFADNS-TVKC 407 (528)
Q Consensus 330 ~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~-~~i~~~~~D~~~~~~~~-~~~f 407 (528)
...++++.+|||+|||+|..++.+++.++++++|+++|+++.+++.++++++..|+. ++++++++|+.++.+.. .++|
T Consensus 51 ~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~f 130 (221)
T 3dr5_A 51 TTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSY 130 (221)
T ss_dssp HSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCE
T ss_pred hhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCc
Confidence 334445569999999999999999998776789999999999999999999999998 67999999998876544 5789
Q ss_pred CEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCC-----chhhH------HH
Q 009708 408 DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSID-----PEENE------ER 476 (528)
Q Consensus 408 D~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~-----~~Ene------~~ 476 (528)
|+|++|++... +..+++.+.++|||||+|++.++.+. +..++ ..
T Consensus 131 D~V~~d~~~~~-------------------------~~~~l~~~~~~LkpGG~lv~dn~~~~g~v~~~~~~~~~~~~~~~ 185 (221)
T 3dr5_A 131 QLVFGQVSPMD-------------------------LKALVDAAWPLLRRGGALVLADALLDGTIADQTRKDRDTQAARD 185 (221)
T ss_dssp EEEEECCCTTT-------------------------HHHHHHHHHHHEEEEEEEEETTTTGGGTCSCSSCCCHHHHHHHH
T ss_pred CeEEEcCcHHH-------------------------HHHHHHHHHHHcCCCcEEEEeCCCCCCcCCCCCCCChHHHHHHH
Confidence 99999976521 13368889999999999998877652 22111 22
Q ss_pred HHHHHhhCCCceEec
Q 009708 477 VEAFLLRHPEFSIDP 491 (528)
Q Consensus 477 v~~~l~~~~~~~~~~ 491 (528)
+..++...++++..-
T Consensus 186 ~~~~l~~~~~~~~~~ 200 (221)
T 3dr5_A 186 ADEYIRSIEGAHVAR 200 (221)
T ss_dssp HHHHHTTCTTEEEEE
T ss_pred HHHHHhhCCCeeEEE
Confidence 445566677776543
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.62 E-value=2.3e-15 Score=147.59 Aligned_cols=142 Identities=25% Similarity=0.353 Sum_probs=110.9
Q ss_pred cccceeEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEE
Q 009708 312 LKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRT 391 (528)
Q Consensus 312 ~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~ 391 (528)
+..+...+....+..+...+++.++.+|||+|||+|..+..++..+++.++|+++|+++.+++.+++|++.+|+.+++++
T Consensus 70 ~~~~~~~~~~~~~~~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~ 149 (255)
T 3mb5_A 70 MKRGPQIVHPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTI 149 (255)
T ss_dssp SCCCSCCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEE
T ss_pred CccccccccHhHHHHHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEE
Confidence 33443344445566777788889999999999999999999999877678999999999999999999999999887999
Q ss_pred EcCccccccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCch
Q 009708 392 IHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPE 471 (528)
Q Consensus 392 ~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~ 471 (528)
+++|+.+... ..+||.|++|+|+. ..+++++.++|+|||++++.+.+ .
T Consensus 150 ~~~d~~~~~~--~~~~D~v~~~~~~~---------------------------~~~l~~~~~~L~~gG~l~~~~~~---~ 197 (255)
T 3mb5_A 150 KLKDIYEGIE--EENVDHVILDLPQP---------------------------ERVVEHAAKALKPGGFFVAYTPC---S 197 (255)
T ss_dssp ECSCGGGCCC--CCSEEEEEECSSCG---------------------------GGGHHHHHHHEEEEEEEEEEESS---H
T ss_pred EECchhhccC--CCCcCEEEECCCCH---------------------------HHHHHHHHHHcCCCCEEEEEECC---H
Confidence 9999986532 36799999998862 13588899999999999865422 2
Q ss_pred hhHHHHHHHHhhCC
Q 009708 472 ENEERVEAFLLRHP 485 (528)
Q Consensus 472 Ene~~v~~~l~~~~ 485 (528)
+....+...+.++.
T Consensus 198 ~~~~~~~~~l~~~g 211 (255)
T 3mb5_A 198 NQVMRLHEKLREFK 211 (255)
T ss_dssp HHHHHHHHHHHHTG
T ss_pred HHHHHHHHHHHHcC
Confidence 23334455666553
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.7e-15 Score=148.71 Aligned_cols=126 Identities=18% Similarity=0.165 Sum_probs=101.6
Q ss_pred eEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcc
Q 009708 317 CAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL 396 (528)
Q Consensus 317 ~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~ 396 (528)
..++.....++..++...++.+|||+|||+|..++.++..++++++|+++|+++.+++.+++++++.|+.++++++++|+
T Consensus 61 ~~~~~~~~~ll~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda 140 (247)
T 1sui_A 61 MTTSADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPA 140 (247)
T ss_dssp GSCCHHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCH
T ss_pred CCcCHHHHHHHHHHHHhhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCH
Confidence 33455556666665555567899999999999999999987657899999999999999999999999977799999999
Q ss_pred ccccccC------CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 397 RTFADNS------TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 397 ~~~~~~~------~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
.+..+.. .++||+|++|+++.. +..+++.+.++|||||+|++.++.
T Consensus 141 ~~~l~~l~~~~~~~~~fD~V~~d~~~~~-------------------------~~~~l~~~~~~LkpGG~lv~d~~~ 192 (247)
T 1sui_A 141 LPVLDEMIKDEKNHGSYDFIFVDADKDN-------------------------YLNYHKRLIDLVKVGGVIGYDNTL 192 (247)
T ss_dssp HHHHHHHHHSGGGTTCBSEEEECSCSTT-------------------------HHHHHHHHHHHBCTTCCEEEECTT
T ss_pred HHHHHHHHhccCCCCCEEEEEEcCchHH-------------------------HHHHHHHHHHhCCCCeEEEEecCC
Confidence 8754321 368999999976511 234688899999999999987643
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.61 E-value=4.7e-15 Score=143.92 Aligned_cols=129 Identities=14% Similarity=0.172 Sum_probs=105.3
Q ss_pred cceeEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEc
Q 009708 314 EGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH 393 (528)
Q Consensus 314 ~G~~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~ 393 (528)
.+...++.....++..++...++.+|||+|||+|..+..++... +.++|+++|+++.+++.++++++..|+.+++++++
T Consensus 50 ~~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~ 128 (232)
T 3ntv_A 50 NEVPIVDRLTLDLIKQLIRMNNVKNILEIGTAIGYSSMQFASIS-DDIHVTTIERNETMIQYAKQNLATYHFENQVRIIE 128 (232)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHTCCEEEEECCSSSHHHHHHHTTC-TTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEE
T ss_pred cCCCCcCHHHHHHHHHHHhhcCCCEEEEEeCchhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE
Confidence 34445566666777777666678899999999999999999853 46899999999999999999999999986799999
Q ss_pred Cccccccc-cCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCC
Q 009708 394 ADLRTFAD-NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 468 (528)
Q Consensus 394 ~D~~~~~~-~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~ 468 (528)
+|+.+..+ ...++||+|++|+++.. +..+++.+.++|||||+|++..+.+
T Consensus 129 ~d~~~~~~~~~~~~fD~V~~~~~~~~-------------------------~~~~l~~~~~~LkpgG~lv~d~~~~ 179 (232)
T 3ntv_A 129 GNALEQFENVNDKVYDMIFIDAAKAQ-------------------------SKKFFEIYTPLLKHQGLVITDNVLY 179 (232)
T ss_dssp SCGGGCHHHHTTSCEEEEEEETTSSS-------------------------HHHHHHHHGGGEEEEEEEEEECTTG
T ss_pred CCHHHHHHhhccCCccEEEEcCcHHH-------------------------HHHHHHHHHHhcCCCeEEEEeeCCc
Confidence 99988655 33578999999977631 2346899999999999999865543
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.7e-16 Score=165.20 Aligned_cols=162 Identities=17% Similarity=0.101 Sum_probs=114.9
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHc---------------CCCccEEEEcCccccc
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLH---------------QVNSVIRTIHADLRTF 399 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~---------------g~~~~i~~~~~D~~~~ 399 (528)
++.+|||+|||+|.+++.++..++ ..+|+++|+++.+++.+++|++.+ |+++ ++++++|+..+
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~-~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~-i~v~~~Da~~~ 124 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETP-AEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKT-IVINHDDANRL 124 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSS-CSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSE-EEEEESCHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCc-eEEEcCcHHHH
Confidence 688999999999999999999864 468999999999999999999999 8876 99999999887
Q ss_pred cccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHH
Q 009708 400 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEA 479 (528)
Q Consensus 400 ~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~ 479 (528)
.......||+|++||||+. ..+++.+.+.||+|| ++|.||+-...........
T Consensus 125 ~~~~~~~fD~I~lDP~~~~--------------------------~~~l~~a~~~lk~gG-~l~vt~td~~~l~~~~~~~ 177 (378)
T 2dul_A 125 MAERHRYFHFIDLDPFGSP--------------------------MEFLDTALRSAKRRG-ILGVTATDGAPLCGAHPRA 177 (378)
T ss_dssp HHHSTTCEEEEEECCSSCC--------------------------HHHHHHHHHHEEEEE-EEEEEECCHHHHTTSSHHH
T ss_pred HHhccCCCCEEEeCCCCCH--------------------------HHHHHHHHHhcCCCC-EEEEEeecchhhccccHHH
Confidence 6543457999999999852 246899999999999 6788997444222222333
Q ss_pred HHhhCCCceEecCCCCCCCc----------cccCCceEEEcCCCCCCCceEEEEEEec
Q 009708 480 FLLRHPEFSIDPADGLVPSD----------FVTKHGFFFSDPIKHSLDGAFAARLVRA 527 (528)
Q Consensus 480 ~l~~~~~~~~~~~~~~~~~~----------~~~~~g~~~~~P~~~~~dGff~a~l~k~ 527 (528)
.+.++..+ ........... .....| +.+.|.....+|||++++.|.
T Consensus 178 ~~~~yg~~-p~~~~~~~e~~~ri~l~~~~~~~~~~g-~~i~P~~~~~~~~y~rv~vrv 233 (378)
T 2dul_A 178 CLRKYLAV-PLRGELCHEVGTRILVGVIARYAAKYD-LGIDVILAYYKDHYFRAFVKL 233 (378)
T ss_dssp HHHHHSSB-CCCSTTHHHHHHHHHHHHHHHHHHTTT-EEEEEEEEEEETTEEEEEEEE
T ss_pred HHHHccCC-CcccccccchhHHHHHHHHHHhcCcCC-cEEEEEEEEecCCEEEEEEEE
Confidence 44443211 11100000000 011233 466776666689999999874
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.60 E-value=7e-15 Score=140.01 Aligned_cols=138 Identities=15% Similarity=0.208 Sum_probs=108.8
Q ss_pred ecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccc
Q 009708 320 QDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 399 (528)
Q Consensus 320 Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~ 399 (528)
+.....++...+.+.++++|||+|||+|..+..+++. .++|+|+|+++.+++.+++|++.+|++++++++++|+.+.
T Consensus 40 ~~~~~~~~l~~l~~~~~~~vLDlGcG~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~ 116 (204)
T 3njr_A 40 KSPMRALTLAALAPRRGELLWDIGGGSGSVSVEWCLA---GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAA 116 (204)
T ss_dssp CHHHHHHHHHHHCCCTTCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGG
T ss_pred cHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhh
Confidence 3444456667778889999999999999999999986 5799999999999999999999999985599999999884
Q ss_pred cccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHH
Q 009708 400 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEA 479 (528)
Q Consensus 400 ~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~ 479 (528)
.... ..||.|++++.. . +. +++.+.++|||||+|++++|+. ++...+..
T Consensus 117 ~~~~-~~~D~v~~~~~~--------~------------------~~-~l~~~~~~LkpgG~lv~~~~~~---~~~~~~~~ 165 (204)
T 3njr_A 117 LADL-PLPEAVFIGGGG--------S------------------QA-LYDRLWEWLAPGTRIVANAVTL---ESETLLTQ 165 (204)
T ss_dssp GTTS-CCCSEEEECSCC--------C------------------HH-HHHHHHHHSCTTCEEEEEECSH---HHHHHHHH
T ss_pred cccC-CCCCEEEECCcc--------c------------------HH-HHHHHHHhcCCCcEEEEEecCc---ccHHHHHH
Confidence 4322 579999987521 0 12 5889999999999999988764 45555666
Q ss_pred HHhhCCCceEecC
Q 009708 480 FLLRHPEFSIDPA 492 (528)
Q Consensus 480 ~l~~~~~~~~~~~ 492 (528)
+++++. +++..+
T Consensus 166 ~l~~~g-~~i~~i 177 (204)
T 3njr_A 166 LHARHG-GQLLRI 177 (204)
T ss_dssp HHHHHC-SEEEEE
T ss_pred HHHhCC-CcEEEE
Confidence 777654 555443
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=2.4e-15 Score=150.21 Aligned_cols=135 Identities=21% Similarity=0.297 Sum_probs=106.7
Q ss_pred chHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccc
Q 009708 322 ESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD 401 (528)
Q Consensus 322 ~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~ 401 (528)
.....+... .++|++|||+|||+|+.++.++... ..+|+|+|+|+.+++.+++|++.+|+.++++++++|+.++..
T Consensus 114 ~~~~~l~~~--~~~~~~VLDlgcG~G~~~~~la~~~--~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~ 189 (278)
T 2frn_A 114 KERVRMAKV--AKPDELVVDMFAGIGHLSLPIAVYG--KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG 189 (278)
T ss_dssp HHHHHHHHH--CCTTCEEEETTCTTTTTHHHHHHHT--CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC
T ss_pred HHHHHHHHh--CCCCCEEEEecccCCHHHHHHHHhC--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc
Confidence 444445554 3578999999999999999999872 238999999999999999999999998889999999998765
Q ss_pred cCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCC---chhhHHHHH
Q 009708 402 NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSID---PEENEERVE 478 (528)
Q Consensus 402 ~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~---~~Ene~~v~ 478 (528)
..+||+|++|||++. ..++..+.++|||||+|++++|+.. ..+..+.+.
T Consensus 190 --~~~fD~Vi~~~p~~~--------------------------~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~i~ 241 (278)
T 2frn_A 190 --ENIADRILMGYVVRT--------------------------HEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFK 241 (278)
T ss_dssp --CSCEEEEEECCCSSG--------------------------GGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHH
T ss_pred --cCCccEEEECCchhH--------------------------HHHHHHHHHHCCCCeEEEEEEeeccccccccHHHHHH
Confidence 478999999999742 2348889999999999999999842 234445556
Q ss_pred HHHhhCCCceE
Q 009708 479 AFLLRHPEFSI 489 (528)
Q Consensus 479 ~~l~~~~~~~~ 489 (528)
..+.+. ++.+
T Consensus 242 ~~~~~~-G~~~ 251 (278)
T 2frn_A 242 RITKEY-GYDV 251 (278)
T ss_dssp HHHHHT-TCEE
T ss_pred HHHHHc-CCee
Confidence 666654 3444
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.4e-15 Score=143.28 Aligned_cols=126 Identities=13% Similarity=0.109 Sum_probs=100.3
Q ss_pred EeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccc
Q 009708 318 AVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 397 (528)
Q Consensus 318 ~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~ 397 (528)
.++.....++..++...++.+|||+|||+|..+..+++.+++.++|+++|+++.+++.++++++..|+.++++++++|+.
T Consensus 39 ~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 118 (210)
T 3c3p_A 39 IVDRQTGRLLYLLARIKQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPL 118 (210)
T ss_dssp CCCHHHHHHHHHHHHHHCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHH
T ss_pred CcCHHHHHHHHHHHHhhCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHH
Confidence 34444555555444444577999999999999999998765468999999999999999999999998877999999998
Q ss_pred cccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCC
Q 009708 398 TFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSID 469 (528)
Q Consensus 398 ~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~ 469 (528)
+..+...+ ||+|++|+++.. +..+++.+.++|||||+|++.++.+.
T Consensus 119 ~~~~~~~~-fD~v~~~~~~~~-------------------------~~~~l~~~~~~LkpgG~lv~~~~~~~ 164 (210)
T 3c3p_A 119 GIAAGQRD-IDILFMDCDVFN-------------------------GADVLERMNRCLAKNALLIAVNALRR 164 (210)
T ss_dssp HHHTTCCS-EEEEEEETTTSC-------------------------HHHHHHHHGGGEEEEEEEEEESSSSC
T ss_pred HHhccCCC-CCEEEEcCChhh-------------------------hHHHHHHHHHhcCCCeEEEEECcccc
Confidence 76443345 999999965421 23468999999999999999876543
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=5.2e-15 Score=137.72 Aligned_cols=136 Identities=12% Similarity=0.080 Sum_probs=97.4
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEE
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 412 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~ 412 (528)
+.+|++|||+|||+|..+..+++. .++|+|+|+|+.+++.++++++.+|++ +++++++|...+.....++||.|++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~la~~---~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~~~~~l~~~~~~~fD~v~~ 95 (185)
T 3mti_A 20 LDDESIVVDATMGNGNDTAFLAGL---SKKVYAFDVQEQALGKTSQRLSDLGIE-NTELILDGHENLDHYVREPIRAAIF 95 (185)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHHTCC-CEEEEESCGGGGGGTCCSCEEEEEE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEeCcHHHHHhhccCCcCEEEE
Confidence 467899999999999999999976 589999999999999999999999985 4899998887754433578999999
Q ss_pred cCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCch--hhHHHHHHHHhhCC
Q 009708 413 DAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPE--ENEERVEAFLLRHP 485 (528)
Q Consensus 413 D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~--Ene~~v~~~l~~~~ 485 (528)
++++-..+ ...+......+..+++.+.++|||||+++++.++.++. +..+.+..++...+
T Consensus 96 ~~~~~~~~-------------~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~ 157 (185)
T 3mti_A 96 NLGYLPSA-------------DKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGHDGGDMEKDAVLEYVIGLD 157 (185)
T ss_dssp EEC------------------------CHHHHHHHHHHHHHHEEEEEEEEEEEC------CHHHHHHHHHHHHSC
T ss_pred eCCCCCCc-------------chhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHhCC
Confidence 86552110 01122223345567999999999999999888775543 22234556666543
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.60 E-value=2.5e-15 Score=144.33 Aligned_cols=126 Identities=15% Similarity=0.198 Sum_probs=102.4
Q ss_pred EeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccc
Q 009708 318 AVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 397 (528)
Q Consensus 318 ~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~ 397 (528)
.++...+.++..++...++.+|||+|||+|..+..++..+++.++|+++|+++.+++.++++++..|+.++++++++|+.
T Consensus 47 ~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 126 (225)
T 3tr6_A 47 QTAPEQAQLLALLVKLMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAK 126 (225)
T ss_dssp SCCHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHH
T ss_pred ccCHHHHHHHHHHHHhhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHH
Confidence 34455566666666656788999999999999999998876578999999999999999999999999888999999997
Q ss_pred cccccCC-----CCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCC
Q 009708 398 TFADNST-----VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 468 (528)
Q Consensus 398 ~~~~~~~-----~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~ 468 (528)
+..+... ++||+|++|++.. . +..+++.+.++|||||+|++.++.+
T Consensus 127 ~~~~~~~~~~~~~~fD~v~~~~~~~------------------~-------~~~~l~~~~~~L~pgG~lv~~~~~~ 177 (225)
T 3tr6_A 127 DTLAELIHAGQAWQYDLIYIDADKA------------------N-------TDLYYEESLKLLREGGLIAVDNVLR 177 (225)
T ss_dssp HHHHHHHTTTCTTCEEEEEECSCGG------------------G-------HHHHHHHHHHHEEEEEEEEEECSSG
T ss_pred HHHHHhhhccCCCCccEEEECCCHH------------------H-------HHHHHHHHHHhcCCCcEEEEeCCCc
Confidence 7543221 6899999998741 1 2346889999999999999877654
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.60 E-value=6.2e-15 Score=145.75 Aligned_cols=153 Identities=17% Similarity=0.182 Sum_probs=106.3
Q ss_pred hHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHH---cCCCccEEEEcCccccc
Q 009708 323 SAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKL---HQVNSVIRTIHADLRTF 399 (528)
Q Consensus 323 ~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~---~g~~~~i~~~~~D~~~~ 399 (528)
.+.+++.++...++.+|||+|||+|..++.++++.+ ..+|+++|+++.+++.+++|++. +++.++++++++|+.++
T Consensus 24 D~~lL~~~~~~~~~~~VLDlG~G~G~~~l~la~~~~-~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~ 102 (260)
T 2ozv_A 24 DAMLLASLVADDRACRIADLGAGAGAAGMAVAARLE-KAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLR 102 (260)
T ss_dssp HHHHHHHTCCCCSCEEEEECCSSSSHHHHHHHHHCT-TEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCC
T ss_pred HHHHHHHHhcccCCCEEEEeCChHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHH
Confidence 467778888888889999999999999999999853 57999999999999999999999 88887799999999887
Q ss_pred cc------cCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhh
Q 009708 400 AD------NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEEN 473 (528)
Q Consensus 400 ~~------~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~En 473 (528)
.. ....+||+|++|||+...+ -...++..... ...........+++.+.++|||||+|++.. +.+.
T Consensus 103 ~~~~~~~~~~~~~fD~Vv~nPPy~~~~-~~~~~~~~~~~---a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~----~~~~ 174 (260)
T 2ozv_A 103 AKARVEAGLPDEHFHHVIMNPPYNDAG-DRRTPDALKAE---AHAMTEGLFEDWIRTASAIMVSGGQLSLIS----RPQS 174 (260)
T ss_dssp HHHHHHTTCCTTCEEEEEECCCC-------------------------CCHHHHHHHHHHHEEEEEEEEEEE----CGGG
T ss_pred hhhhhhhccCCCCcCEEEECCCCcCCC-CCCCcCHHHHH---HhhcCcCCHHHHHHHHHHHcCCCCEEEEEE----cHHH
Confidence 32 1246899999999996553 11222221110 000111124567999999999999998643 2233
Q ss_pred HHHHHHHHhhC
Q 009708 474 EERVEAFLLRH 484 (528)
Q Consensus 474 e~~v~~~l~~~ 484 (528)
...+...+.++
T Consensus 175 ~~~~~~~l~~~ 185 (260)
T 2ozv_A 175 VAEIIAACGSR 185 (260)
T ss_dssp HHHHHHHHTTT
T ss_pred HHHHHHHHHhc
Confidence 33344555543
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.59 E-value=5.1e-15 Score=139.23 Aligned_cols=141 Identities=18% Similarity=0.217 Sum_probs=106.8
Q ss_pred CCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEE
Q 009708 332 DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVL 411 (528)
Q Consensus 332 ~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl 411 (528)
.+.++.+|||+|||+|..+..+++.+++.++|+|+|+++.+++.++++++.+|+.++++++++|+..+.....++||+|+
T Consensus 19 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~ 98 (197)
T 3eey_A 19 FVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVM 98 (197)
T ss_dssp HCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEE
T ss_pred cCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEE
Confidence 35678899999999999999999987666799999999999999999999999866699999999887644457899999
Q ss_pred EcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCch--hhHHHHHHHHhhCC
Q 009708 412 LDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPE--ENEERVEAFLLRHP 485 (528)
Q Consensus 412 ~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~--Ene~~v~~~l~~~~ 485 (528)
+|+|+...+. ........ .+.++++.+.++|||||++++++++-++. +..+.+..++...+
T Consensus 99 ~~~~~~~~~~------~~~~~~~~-------~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 161 (197)
T 3eey_A 99 FNLGYLPSGD------HSISTRPE-------TTIQALSKAMELLVTGGIITVVIYYGGDTGFEEKEKVLEFLKGVD 161 (197)
T ss_dssp EEESBCTTSC------TTCBCCHH-------HHHHHHHHHHHHEEEEEEEEEEECCBTTTBSHHHHHHHHHHTTSC
T ss_pred EcCCcccCcc------cccccCcc-------cHHHHHHHHHHhCcCCCEEEEEEccCCCCcHHHHHHHHHHHHhCC
Confidence 9987721110 00111111 23447999999999999999887654432 23345667776543
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.59 E-value=2.4e-14 Score=135.60 Aligned_cols=139 Identities=17% Similarity=0.242 Sum_probs=110.3
Q ss_pred cceeEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEc
Q 009708 314 EGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH 393 (528)
Q Consensus 314 ~G~~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~ 393 (528)
+|.+ .++.....+...+.+.++.+|||+|||+|..+..++.. .+.++|+++|+|+.+++.+++|++.+|++ ++++++
T Consensus 20 ~g~~-~~~~i~~~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~ 96 (204)
T 3e05_A 20 KKLI-TKQEVRAVTLSKLRLQDDLVMWDIGAGSASVSIEASNL-MPNGRIFALERNPQYLGFIRDNLKKFVAR-NVTLVE 96 (204)
T ss_dssp TTTS-CCHHHHHHHHHHTTCCTTCEEEEETCTTCHHHHHHHHH-CTTSEEEEEECCHHHHHHHHHHHHHHTCT-TEEEEE
T ss_pred CCcC-ChHHHHHHHHHHcCCCCCCEEEEECCCCCHHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEe
Confidence 3666 55555566677788889999999999999999999987 34689999999999999999999999986 499999
Q ss_pred CccccccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhh
Q 009708 394 ADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEEN 473 (528)
Q Consensus 394 ~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~En 473 (528)
+|+.+..... ..||+|+++.+.. + ...+++.+.++|||||++++++++. ++
T Consensus 97 ~d~~~~~~~~-~~~D~i~~~~~~~------------------~-------~~~~l~~~~~~LkpgG~l~~~~~~~---~~ 147 (204)
T 3e05_A 97 AFAPEGLDDL-PDPDRVFIGGSGG------------------M-------LEEIIDAVDRRLKSEGVIVLNAVTL---DT 147 (204)
T ss_dssp CCTTTTCTTS-CCCSEEEESCCTT------------------C-------HHHHHHHHHHHCCTTCEEEEEECBH---HH
T ss_pred CChhhhhhcC-CCCCEEEECCCCc------------------C-------HHHHHHHHHHhcCCCeEEEEEeccc---cc
Confidence 9997654332 5799999987652 1 1356999999999999999877653 34
Q ss_pred HHHHHHHHhhC
Q 009708 474 EERVEAFLLRH 484 (528)
Q Consensus 474 e~~v~~~l~~~ 484 (528)
.+.+..++.++
T Consensus 148 ~~~~~~~l~~~ 158 (204)
T 3e05_A 148 LTKAVEFLEDH 158 (204)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHC
Confidence 44556666665
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.1e-14 Score=140.03 Aligned_cols=127 Identities=16% Similarity=0.147 Sum_probs=99.8
Q ss_pred Eeecch-HHHHHHhcC--CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCC----CccEE
Q 009708 318 AVQDES-AGLVVAVVD--PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQV----NSVIR 390 (528)
Q Consensus 318 ~~Qd~~-s~l~~~~l~--~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~----~~~i~ 390 (528)
.++++. ...+...+. +.++.+|||+|||+|.++..+++.+++.++|+++|+++.+++.++++++.+|. .++++
T Consensus 57 ~~~~p~~~~~~l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~ 136 (226)
T 1i1n_A 57 TISAPHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQ 136 (226)
T ss_dssp EECCHHHHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEE
T ss_pred eecCHHHHHHHHHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEE
Confidence 344443 234444554 77899999999999999999999876567999999999999999999998774 23489
Q ss_pred EEcCccccccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCc
Q 009708 391 TIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDP 470 (528)
Q Consensus 391 ~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~ 470 (528)
++++|+...... ...||+|+++.+|.. +++.+.++|||||+|++++|+...
T Consensus 137 ~~~~d~~~~~~~-~~~fD~i~~~~~~~~----------------------------~~~~~~~~LkpgG~lv~~~~~~~~ 187 (226)
T 1i1n_A 137 LVVGDGRMGYAE-EAPYDAIHVGAAAPV----------------------------VPQALIDQLKPGGRLILPVGPAGG 187 (226)
T ss_dssp EEESCGGGCCGG-GCCEEEEEECSBBSS----------------------------CCHHHHHTEEEEEEEEEEESCTTS
T ss_pred EEECCcccCccc-CCCcCEEEECCchHH----------------------------HHHHHHHhcCCCcEEEEEEecCCC
Confidence 999998764322 357999999988821 256778999999999999998766
Q ss_pred hhh
Q 009708 471 EEN 473 (528)
Q Consensus 471 ~En 473 (528)
+++
T Consensus 188 ~~~ 190 (226)
T 1i1n_A 188 NQM 190 (226)
T ss_dssp CEE
T ss_pred ceE
Confidence 554
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.57 E-value=2.7e-14 Score=142.13 Aligned_cols=136 Identities=15% Similarity=0.190 Sum_probs=107.2
Q ss_pred hHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc
Q 009708 323 SAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 402 (528)
Q Consensus 323 ~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~ 402 (528)
.+..+...+++.++.+|||+|||+|..+..+++.+++.++|+++|+++.+++.+++|++.+|+.++++++++|+.+...
T Consensus 100 ~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~- 178 (277)
T 1o54_A 100 DSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFD- 178 (277)
T ss_dssp HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCS-
T ss_pred HHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHccc-
Confidence 3446667778889999999999999999999998666789999999999999999999999986569999999987632
Q ss_pred CCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHHHh
Q 009708 403 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLL 482 (528)
Q Consensus 403 ~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~l~ 482 (528)
.+.||+|++|+|+. ..+++.+.++|+|||+|++.+++.. ....+...+.
T Consensus 179 -~~~~D~V~~~~~~~---------------------------~~~l~~~~~~L~pgG~l~~~~~~~~---~~~~~~~~l~ 227 (277)
T 1o54_A 179 -EKDVDALFLDVPDP---------------------------WNYIDKCWEALKGGGRFATVCPTTN---QVQETLKKLQ 227 (277)
T ss_dssp -CCSEEEEEECCSCG---------------------------GGTHHHHHHHEEEEEEEEEEESSHH---HHHHHHHHHH
T ss_pred -CCccCEEEECCcCH---------------------------HHHHHHHHHHcCCCCEEEEEeCCHH---HHHHHHHHHH
Confidence 35799999998862 1358888999999999998876532 2223344555
Q ss_pred hCCCceEec
Q 009708 483 RHPEFSIDP 491 (528)
Q Consensus 483 ~~~~~~~~~ 491 (528)
+ .+|....
T Consensus 228 ~-~gf~~~~ 235 (277)
T 1o54_A 228 E-LPFIRIE 235 (277)
T ss_dssp H-SSEEEEE
T ss_pred H-CCCceeE
Confidence 5 4565443
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=6.8e-15 Score=146.55 Aligned_cols=122 Identities=23% Similarity=0.332 Sum_probs=97.9
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEE
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 412 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~ 412 (528)
.++|++|||+|||+|.+++.+|.. +..+|+|+|+|+.+++.+++|++.+|+.++++++++|++++... ..||.|++
T Consensus 123 ~~~g~~VlD~~aG~G~~~i~~a~~--g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~--~~~D~Vi~ 198 (278)
T 3k6r_A 123 AKPDELVVDMFAGIGHLSLPIAVY--GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGE--NIADRILM 198 (278)
T ss_dssp CCTTCEEEETTCTTTTTTHHHHHH--TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCC--SCEEEEEE
T ss_pred cCCCCEEEEecCcCcHHHHHHHHh--cCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccc--cCCCEEEE
Confidence 467999999999999999999986 35689999999999999999999999999999999999987653 68999999
Q ss_pred cCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC---CCchhhHHHHHHHHhhC
Q 009708 413 DAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS---IDPEENEERVEAFLLRH 484 (528)
Q Consensus 413 D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs---~~~~Ene~~v~~~l~~~ 484 (528)
|+|+++. ++|..|.++||+||+|.|.+.. ....+..+.+..+....
T Consensus 199 ~~p~~~~--------------------------~~l~~a~~~lk~gG~ih~~~~~~e~~~~~~~~e~i~~~~~~~ 247 (278)
T 3k6r_A 199 GYVVRTH--------------------------EFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEY 247 (278)
T ss_dssp CCCSSGG--------------------------GGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHT
T ss_pred CCCCcHH--------------------------HHHHHHHHHcCCCCEEEEEeeecccccchhHHHHHHHHHHHc
Confidence 9998541 2478889999999998754321 12223344555655544
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=6.7e-15 Score=153.44 Aligned_cols=110 Identities=20% Similarity=0.189 Sum_probs=93.9
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCcc-EEEEcCccccccc-cCCCCCCEEE
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSV-IRTIHADLRTFAD-NSTVKCDKVL 411 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~-i~~~~~D~~~~~~-~~~~~fD~Vl 411 (528)
++|.+|||+|||+|++++.+|..+.+.++|+++|+++.+++.+++|++.+|++++ ++++++|+..+.. ....+||+|+
T Consensus 51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~ 130 (392)
T 3axs_A 51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVD 130 (392)
T ss_dssp CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEE
T ss_pred CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEE
Confidence 5688999999999999999999765457999999999999999999999999877 9999999988765 4456799999
Q ss_pred EcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCc
Q 009708 412 LDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDP 470 (528)
Q Consensus 412 ~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~ 470 (528)
+||+++. ..+++.+.++|++|| ++|+||+-..
T Consensus 131 lDP~g~~--------------------------~~~l~~a~~~Lk~gG-ll~~t~t~~~ 162 (392)
T 3axs_A 131 LDPFGTP--------------------------VPFIESVALSMKRGG-ILSLTATDTA 162 (392)
T ss_dssp ECCSSCC--------------------------HHHHHHHHHHEEEEE-EEEEEECCHH
T ss_pred ECCCcCH--------------------------HHHHHHHHHHhCCCC-EEEEEecchh
Confidence 9997531 236888999999999 7788897544
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.55 E-value=2e-14 Score=138.48 Aligned_cols=148 Identities=10% Similarity=0.065 Sum_probs=101.4
Q ss_pred CCCCCeEEEeCCc-cchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEE
Q 009708 333 PQPGQSIVDCCAA-PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVL 411 (528)
Q Consensus 333 ~~~g~~VLDl~aG-~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl 411 (528)
+.++.+|||+||| +|..++.++... ..+|+|+|+++.+++.+++|++.+|+ +++++++|+..+.....++||+|+
T Consensus 53 ~~~~~~vLDlG~G~~G~~~~~la~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~~~fD~I~ 128 (230)
T 3evz_A 53 LRGGEVALEIGTGHTAMMALMAEKFF--NCKVTATEVDEEFFEYARRNIERNNS--NVRLVKSNGGIIKGVVEGTFDVIF 128 (230)
T ss_dssp CCSSCEEEEECCTTTCHHHHHHHHHH--CCEEEEEECCHHHHHHHHHHHHHTTC--CCEEEECSSCSSTTTCCSCEEEEE
T ss_pred cCCCCEEEEcCCCHHHHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHhCC--CcEEEeCCchhhhhcccCceeEEE
Confidence 5678999999999 999999999874 57999999999999999999999998 389999997544333347899999
Q ss_pred EcCCCCCCccccCC-chhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHHHhhCCCceEe
Q 009708 412 LDAPCSGLGVLSKR-ADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSID 490 (528)
Q Consensus 412 ~D~Pcsg~G~~~~~-pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~l~~~~~~~~~ 490 (528)
+|||+...+.-... |...|...... ......+++.+.++|||||++++.+++. .+..+.+...+.++ +|.+.
T Consensus 129 ~npp~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~LkpgG~l~~~~~~~--~~~~~~~~~~l~~~-g~~~~ 201 (230)
T 3evz_A 129 SAPPYYDKPLGRVLTEREAIGGGKYG----EEFSVKLLEEAFDHLNPGGKVALYLPDK--EKLLNVIKERGIKL-GYSVK 201 (230)
T ss_dssp ECCCCC---------------CCSSS----CHHHHHHHHHHGGGEEEEEEEEEEEESC--HHHHHHHHHHHHHT-TCEEE
T ss_pred ECCCCcCCccccccChhhhhccCccc----hHHHHHHHHHHHHHhCCCeEEEEEeccc--HhHHHHHHHHHHHc-CCceE
Confidence 99999654331111 11011000001 1223568999999999999999865432 23334455666665 45554
Q ss_pred c
Q 009708 491 P 491 (528)
Q Consensus 491 ~ 491 (528)
.
T Consensus 202 ~ 202 (230)
T 3evz_A 202 D 202 (230)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.7e-14 Score=148.33 Aligned_cols=149 Identities=15% Similarity=0.281 Sum_probs=106.0
Q ss_pred HHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC-C-
Q 009708 327 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS-T- 404 (528)
Q Consensus 327 ~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~-~- 404 (528)
+.+.+... +++|||+|||+|.+++.+|.. ..+|+|+|+++.+++.+++|++.+|+++ ++++++|+.++.... .
T Consensus 206 ~~~~~~~~-~~~vLDl~cG~G~~~l~la~~---~~~V~gvd~~~~ai~~a~~n~~~ng~~~-v~~~~~d~~~~~~~~~~~ 280 (369)
T 3bt7_A 206 ALDVTKGS-KGDLLELYCGNGNFSLALARN---FDRVLATEIAKPSVAAAQYNIAANHIDN-VQIIRMAAEEFTQAMNGV 280 (369)
T ss_dssp HHHHTTTC-CSEEEEESCTTSHHHHHHGGG---SSEEEEECCCHHHHHHHHHHHHHTTCCS-EEEECCCSHHHHHHHSSC
T ss_pred HHHHhhcC-CCEEEEccCCCCHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHHcCCCc-eEEEECCHHHHHHHHhhc
Confidence 34445444 578999999999999998864 4699999999999999999999999975 999999998764321 1
Q ss_pred -------------CCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCch
Q 009708 405 -------------VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPE 471 (528)
Q Consensus 405 -------------~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~ 471 (528)
..||+|++|||+.| . ...+.+.|+++|+|||++|+...-
T Consensus 281 ~~~~~l~~~~~~~~~fD~Vv~dPPr~g--~--------------------------~~~~~~~l~~~g~ivyvsc~p~t~ 332 (369)
T 3bt7_A 281 REFNRLQGIDLKSYQCETIFVDPPRSG--L--------------------------DSETEKMVQAYPRILYISCNPETL 332 (369)
T ss_dssp CCCTTGGGSCGGGCCEEEEEECCCTTC--C--------------------------CHHHHHHHTTSSEEEEEESCHHHH
T ss_pred cccccccccccccCCCCEEEECcCccc--c--------------------------HHHHHHHHhCCCEEEEEECCHHHH
Confidence 27999999999964 1 233455567899999999974322
Q ss_pred hhHHHHHHHHhhCCCceEecCCCCCCCccccCCceEEEcCCCCCCCceEEEEEEec
Q 009708 472 ENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLVRA 527 (528)
Q Consensus 472 Ene~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~~~dGff~a~l~k~ 527 (528)
..-+..+.. ++++..+. -+..+||.+..+- +|+|+|+
T Consensus 333 --ard~~~l~~---~y~~~~~~------------~~D~FP~T~HvE~--v~ll~r~ 369 (369)
T 3bt7_A 333 --CKNLETLSQ---THKVERLA------------LFDQFPYTHHMQC--GVLLTAK 369 (369)
T ss_dssp --HHHHHHHHH---HEEEEEEE------------EECCSTTSSCCEE--EEEEEEC
T ss_pred --HHHHHHHhh---CcEEEEEE------------eeccCCCCCcEEE--EEEEEeC
Confidence 122223332 35554331 1234687777665 6777663
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.54 E-value=5.7e-14 Score=131.43 Aligned_cols=111 Identities=18% Similarity=0.198 Sum_probs=90.2
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC-CCCCCEEEE
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS-TVKCDKVLL 412 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~-~~~fD~Vl~ 412 (528)
.++.+|||+|||+|..++.+++. +..+|+|+|+|+.+++.+++|++.++++ +++++++|+.++.... .++||+|++
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~fD~i~~ 119 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSR--GAASVLFVESDQRSAAVIARNIEALGLS-GATLRRGAVAAVVAAGTTSPVDLVLA 119 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHT--TCSEEEEEECCHHHHHHHHHHHHHHTCS-CEEEEESCHHHHHHHCCSSCCSEEEE
T ss_pred CCCCEEEEeCCCcCHHHHHHHHC--CCCeEEEEECCHHHHHHHHHHHHHcCCC-ceEEEEccHHHHHhhccCCCccEEEE
Confidence 56889999999999999988774 4568999999999999999999999985 4999999998875432 478999999
Q ss_pred cCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhc--cCcCCCEEEEEcCCC
Q 009708 413 DAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASL--LVKPGGVLVYSTCSI 468 (528)
Q Consensus 413 D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~--~LkpGG~LvysTcs~ 468 (528)
|||+.. ... ....++..+.+ +|||||++++.+.+-
T Consensus 120 ~~p~~~--------------~~~-------~~~~~l~~~~~~~~L~pgG~l~~~~~~~ 156 (189)
T 3p9n_A 120 DPPYNV--------------DSA-------DVDAILAALGTNGWTREGTVAVVERATT 156 (189)
T ss_dssp CCCTTS--------------CHH-------HHHHHHHHHHHSSSCCTTCEEEEEEETT
T ss_pred CCCCCc--------------chh-------hHHHHHHHHHhcCccCCCeEEEEEecCC
Confidence 999732 011 22345777777 999999999876543
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.53 E-value=5.5e-14 Score=137.56 Aligned_cols=139 Identities=22% Similarity=0.285 Sum_probs=105.8
Q ss_pred eecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHc-CCCccEEEEcCccc
Q 009708 319 VQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLH-QVNSVIRTIHADLR 397 (528)
Q Consensus 319 ~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~-g~~~~i~~~~~D~~ 397 (528)
+....+..+...+++.++.+|||+|||+|..+..+++.+++.++|+++|+++.+++.++++++.+ |.+ +++++++|+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~-~v~~~~~d~~ 158 (258)
T 2pwy_A 80 TYPKDASAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVE-NVRFHLGKLE 158 (258)
T ss_dssp CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCC-CEEEEESCGG
T ss_pred ccchHHHHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCC-CEEEEECchh
Confidence 33334456667778889999999999999999999998766789999999999999999999998 854 4899999998
Q ss_pred cccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHH
Q 009708 398 TFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERV 477 (528)
Q Consensus 398 ~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v 477 (528)
+... ..+.||+|++|+|.. ..+++++.++|+|||++++.+.+. +....+
T Consensus 159 ~~~~-~~~~~D~v~~~~~~~---------------------------~~~l~~~~~~L~~gG~l~~~~~~~---~~~~~~ 207 (258)
T 2pwy_A 159 EAEL-EEAAYDGVALDLMEP---------------------------WKVLEKAALALKPDRFLVAYLPNI---TQVLEL 207 (258)
T ss_dssp GCCC-CTTCEEEEEEESSCG---------------------------GGGHHHHHHHEEEEEEEEEEESCH---HHHHHH
T ss_pred hcCC-CCCCcCEEEECCcCH---------------------------HHHHHHHHHhCCCCCEEEEEeCCH---HHHHHH
Confidence 7621 235799999988751 135888999999999999776543 222233
Q ss_pred HHHHhhCCCceEe
Q 009708 478 EAFLLRHPEFSID 490 (528)
Q Consensus 478 ~~~l~~~~~~~~~ 490 (528)
...+.+ .+|...
T Consensus 208 ~~~l~~-~gf~~~ 219 (258)
T 2pwy_A 208 VRAAEA-HPFRLE 219 (258)
T ss_dssp HHHHTT-TTEEEE
T ss_pred HHHHHH-CCCceE
Confidence 344554 355543
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.1e-13 Score=127.29 Aligned_cols=129 Identities=17% Similarity=0.211 Sum_probs=100.1
Q ss_pred HHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCC
Q 009708 325 GLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 404 (528)
Q Consensus 325 ~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~ 404 (528)
..+...+.+.++.+|||+|||+|..+..++... +..+|+++|+++.+++.++++++.+|++.++ ++++|+....+...
T Consensus 15 ~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~ 92 (178)
T 3hm2_A 15 ALAISALAPKPHETLWDIGGGSGSIAIEWLRST-PQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVP 92 (178)
T ss_dssp HHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTS-SSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCC
T ss_pred HHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHC-CCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccC
Confidence 445556678889999999999999999999874 4689999999999999999999999998557 88888865433323
Q ss_pred CCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHHHhhC
Q 009708 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRH 484 (528)
Q Consensus 405 ~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~l~~~ 484 (528)
++||+|+++.+... ..+++.+.++|||||++++++++. ++...+..++.++
T Consensus 93 ~~~D~i~~~~~~~~--------------------------~~~l~~~~~~L~~gG~l~~~~~~~---~~~~~~~~~~~~~ 143 (178)
T 3hm2_A 93 DNPDVIFIGGGLTA--------------------------PGVFAAAWKRLPVGGRLVANAVTV---ESEQMLWALRKQF 143 (178)
T ss_dssp SCCSEEEECC-TTC--------------------------TTHHHHHHHTCCTTCEEEEEECSH---HHHHHHHHHHHHH
T ss_pred CCCCEEEECCcccH--------------------------HHHHHHHHHhcCCCCEEEEEeecc---ccHHHHHHHHHHc
Confidence 68999998665521 235889999999999999887754 3344455666655
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.52 E-value=5.2e-14 Score=129.96 Aligned_cols=118 Identities=18% Similarity=0.242 Sum_probs=92.1
Q ss_pred HHHhcC-CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCC
Q 009708 327 VVAVVD-PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 405 (528)
Q Consensus 327 ~~~~l~-~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~ 405 (528)
+...+. ..++.+|||+|||+|..+..+++. +..+|+++|+++.+++.+++|++.+++.++++++++|+.+.......
T Consensus 22 ~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 99 (177)
T 2esr_A 22 IFNMIGPYFNGGRVLDLFAGSGGLAIEAVSR--GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTG 99 (177)
T ss_dssp HHHHHCSCCCSCEEEEETCTTCHHHHHHHHT--TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCS
T ss_pred HHHHHHhhcCCCeEEEeCCCCCHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcC
Confidence 333444 567889999999999999999875 45799999999999999999999999876799999999885443346
Q ss_pred CCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHH--hccCcCCCEEEEEcCCCC
Q 009708 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAA--SLLVKPGGVLVYSTCSID 469 (528)
Q Consensus 406 ~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a--~~~LkpGG~LvysTcs~~ 469 (528)
+||+|++|+|+.. ... .++++.. .++|||||++++++++..
T Consensus 100 ~fD~i~~~~~~~~----------------~~~-------~~~~~~l~~~~~L~~gG~l~~~~~~~~ 142 (177)
T 2esr_A 100 RFDLVFLDPPYAK----------------ETI-------VATIEALAAKNLLSEQVMVVCETDKTV 142 (177)
T ss_dssp CEEEEEECCSSHH----------------HHH-------HHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred CCCEEEECCCCCc----------------chH-------HHHHHHHHhCCCcCCCcEEEEEECCcc
Confidence 7999999999720 111 2223333 499999999998877644
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.52 E-value=8.6e-14 Score=138.21 Aligned_cols=126 Identities=23% Similarity=0.303 Sum_probs=100.6
Q ss_pred ceeEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHc-C-CCccEEEE
Q 009708 315 GLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLH-Q-VNSVIRTI 392 (528)
Q Consensus 315 G~~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~-g-~~~~i~~~ 392 (528)
+...++......+...+++.++.+|||+|||+|..+..++..+++.++|+++|+++.+++.+++|++.. | +..+++++
T Consensus 79 ~~~~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~ 158 (280)
T 1i9g_A 79 GPQVIYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLV 158 (280)
T ss_dssp CSCCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEE
T ss_pred cceeecHHHHHHHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEE
Confidence 333344445556677788899999999999999999999987766789999999999999999999988 6 33359999
Q ss_pred cCccccccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCC
Q 009708 393 HADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 468 (528)
Q Consensus 393 ~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~ 468 (528)
++|+..... ..+.||+|++|+|. | | .++.++.++|+|||++++++++.
T Consensus 159 ~~d~~~~~~-~~~~~D~v~~~~~~---------~---~---------------~~l~~~~~~L~pgG~l~~~~~~~ 206 (280)
T 1i9g_A 159 VSDLADSEL-PDGSVDRAVLDMLA---------P---W---------------EVLDAVSRLLVAGGVLMVYVATV 206 (280)
T ss_dssp CSCGGGCCC-CTTCEEEEEEESSC---------G---G---------------GGHHHHHHHEEEEEEEEEEESSH
T ss_pred ECchHhcCC-CCCceeEEEECCcC---------H---H---------------HHHHHHHHhCCCCCEEEEEeCCH
Confidence 999987642 23679999998774 1 1 25888999999999999877653
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.4e-14 Score=138.88 Aligned_cols=125 Identities=16% Similarity=0.158 Sum_probs=99.5
Q ss_pred ecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccc
Q 009708 320 QDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 399 (528)
Q Consensus 320 Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~ 399 (528)
+.....++..++...++.+|||+|||+|..++.++..+++.++|+++|+++.+++.++++++..|+.++++++++|+.+.
T Consensus 57 ~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~ 136 (232)
T 3cbg_A 57 SPEQAQFLGLLISLTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALAT 136 (232)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHH
T ss_pred CHHHHHHHHHHHHhcCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH
Confidence 34444555555444567799999999999999999887656899999999999999999999999987799999998764
Q ss_pred cccC---C--CCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCC
Q 009708 400 ADNS---T--VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSID 469 (528)
Q Consensus 400 ~~~~---~--~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~ 469 (528)
.... . ++||+|++|++.. . +..+++.+.++|+|||+|++.++.+.
T Consensus 137 l~~l~~~~~~~~fD~V~~d~~~~------------------~-------~~~~l~~~~~~LkpgG~lv~~~~~~~ 186 (232)
T 3cbg_A 137 LEQLTQGKPLPEFDLIFIDADKR------------------N-------YPRYYEIGLNLLRRGGLMVIDNVLWH 186 (232)
T ss_dssp HHHHHTSSSCCCEEEEEECSCGG------------------G-------HHHHHHHHHHTEEEEEEEEEECTTGG
T ss_pred HHHHHhcCCCCCcCEEEECCCHH------------------H-------HHHHHHHHHHHcCCCeEEEEeCCCcC
Confidence 3221 1 6799999997641 1 23468899999999999999888754
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=5.2e-14 Score=135.47 Aligned_cols=125 Identities=16% Similarity=0.140 Sum_probs=99.1
Q ss_pred eecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccc
Q 009708 319 VQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 398 (528)
Q Consensus 319 ~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~ 398 (528)
+......++..++...++.+|||+|||+|..++.+++.+++.++|+++|+++.+++.++++++..|+.++++++++|+.+
T Consensus 53 ~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~ 132 (229)
T 2avd_A 53 MTCEQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALE 132 (229)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHH
T ss_pred cCHHHHHHHHHHHHhcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHH
Confidence 33344445555555567789999999999999999987665689999999999999999999999997679999999976
Q ss_pred ccccC--C---CCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCC
Q 009708 399 FADNS--T---VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 468 (528)
Q Consensus 399 ~~~~~--~---~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~ 468 (528)
..... . ++||+|++|++.. .+..+++.+.++|+|||++++.++.+
T Consensus 133 ~~~~~~~~~~~~~~D~v~~d~~~~-------------------------~~~~~l~~~~~~L~pgG~lv~~~~~~ 182 (229)
T 2avd_A 133 TLDELLAAGEAGTFDVAVVDADKE-------------------------NCSAYYERCLQLLRPGGILAVLRVLW 182 (229)
T ss_dssp HHHHHHHTTCTTCEEEEEECSCST-------------------------THHHHHHHHHHHEEEEEEEEEECCSG
T ss_pred HHHHHHhcCCCCCccEEEECCCHH-------------------------HHHHHHHHHHHHcCCCeEEEEECCCc
Confidence 53321 1 5799999998741 12346888999999999999877653
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.7e-14 Score=145.35 Aligned_cols=137 Identities=11% Similarity=0.054 Sum_probs=100.6
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHH--cCC-CccEEEEcCccccccccCCCCCCEEE
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKL--HQV-NSVIRTIHADLRTFADNSTVKCDKVL 411 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~--~g~-~~~i~~~~~D~~~~~~~~~~~fD~Vl 411 (528)
.+.+|||+|||+|+.+..+++.. +..+|+++|+|+.+++.+++++.. .++ ..+++++++|+..+.....++||+|+
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 168 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHD-SVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 168 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTST-TCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEE
Confidence 45799999999999999998763 457999999999999999999865 233 23599999999886544456899999
Q ss_pred EcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC--CCchhhHHHHHHHHhhCCCceE
Q 009708 412 LDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS--IDPEENEERVEAFLLRHPEFSI 489 (528)
Q Consensus 412 ~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs--~~~~Ene~~v~~~l~~~~~~~~ 489 (528)
+|+|+...|... ...+.++++.+.++|||||+|++.+|+ +..++...++..+.+.++.+.+
T Consensus 169 ~d~~~~~~~~~~-----------------~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~ 231 (296)
T 1inl_A 169 IDSTDPTAGQGG-----------------HLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKVFPITRV 231 (296)
T ss_dssp EEC---------------------------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHHCSEEEE
T ss_pred EcCCCcccCchh-----------------hhhHHHHHHHHHHhcCCCcEEEEEccCcccCHHHHHHHHHHHHHHCCceEE
Confidence 999873222100 002356789999999999999999988 4456666677666666665544
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.52 E-value=3.3e-14 Score=134.90 Aligned_cols=110 Identities=15% Similarity=0.165 Sum_probs=88.1
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCC-ccEEEEcCcccccccc-CCCC-CCEEE
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN-SVIRTIHADLRTFADN-STVK-CDKVL 411 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~-~~i~~~~~D~~~~~~~-~~~~-fD~Vl 411 (528)
++.+|||+|||+|..++.++.. +..+|+|+|+|+.+++.+++|++.+|+. ++++++++|+.++... ..++ ||+|+
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~ 130 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSR--QAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVF 130 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHT--TCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEE
T ss_pred CCCeEEEcCCccCHHHHHHHHc--cCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEE
Confidence 5789999999999999987765 3469999999999999999999999983 3499999999886543 2467 99999
Q ss_pred EcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHH--hccCcCCCEEEEEcCCCC
Q 009708 412 LDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAA--SLLVKPGGVLVYSTCSID 469 (528)
Q Consensus 412 ~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a--~~~LkpGG~LvysTcs~~ 469 (528)
+|||+. .+ .. ..+++.+ .++|||||++++++|+..
T Consensus 131 ~~~~~~-~~---------------~~-------~~~l~~~~~~~~LkpgG~l~i~~~~~~ 167 (201)
T 2ift_A 131 LDPPFH-FN---------------LA-------EQAISLLCENNWLKPNALIYVETEKDK 167 (201)
T ss_dssp ECCCSS-SC---------------HH-------HHHHHHHHHTTCEEEEEEEEEEEESSS
T ss_pred ECCCCC-Cc---------------cH-------HHHHHHHHhcCccCCCcEEEEEECCCC
Confidence 999962 11 11 2235555 678999999999988765
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.51 E-value=6.6e-14 Score=139.36 Aligned_cols=122 Identities=25% Similarity=0.261 Sum_probs=95.8
Q ss_pred eEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcc
Q 009708 317 CAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL 396 (528)
Q Consensus 317 ~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~ 396 (528)
|..|.........+..+.++++|||+|||+|.+++.+|...+ .++|+|+|+++.+++.+++|++.+|+++ +.++++|+
T Consensus 101 f~~~~~~~e~~~~~~~~~~~~~VLDlgcG~G~~s~~la~~~~-~~~V~~vD~s~~av~~a~~n~~~n~l~~-~~~~~~d~ 178 (272)
T 3a27_A 101 MWSQGNIEERKRMAFISNENEVVVDMFAGIGYFTIPLAKYSK-PKLVYAIEKNPTAYHYLCENIKLNKLNN-VIPILADN 178 (272)
T ss_dssp CCCGGGHHHHHHHHTSCCTTCEEEETTCTTTTTHHHHHHHTC-CSEEEEEECCHHHHHHHHHHHHHTTCSS-EEEEESCG
T ss_pred EECCCchHHHHHHHHhcCCCCEEEEecCcCCHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEECCh
Confidence 334443333333344567889999999999999999998743 5699999999999999999999999986 78999999
Q ss_pred ccccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCC
Q 009708 397 RTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSID 469 (528)
Q Consensus 397 ~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~ 469 (528)
.++ +. ..+||+|++|||. +. .+++..+.+.|+|||+++++ |...
T Consensus 179 ~~~-~~-~~~~D~Vi~d~p~---~~-----------------------~~~l~~~~~~LkpgG~l~~s-~~~~ 222 (272)
T 3a27_A 179 RDV-EL-KDVADRVIMGYVH---KT-----------------------HKFLDKTFEFLKDRGVIHYH-ETVA 222 (272)
T ss_dssp GGC-CC-TTCEEEEEECCCS---SG-----------------------GGGHHHHHHHEEEEEEEEEE-EEEE
T ss_pred HHc-Cc-cCCceEEEECCcc---cH-----------------------HHHHHHHHHHcCCCCEEEEE-EcCc
Confidence 987 33 4689999999997 11 12488889999999988754 5543
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.50 E-value=7.4e-14 Score=131.68 Aligned_cols=123 Identities=18% Similarity=0.234 Sum_probs=91.9
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc------CC--
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN------ST-- 404 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~------~~-- 404 (528)
+++|.+|||+|||||+++..+++. .++|+|+|+++.. ..++ ++++++|+.+.... ..
T Consensus 23 ~~~g~~VLDlG~G~G~~s~~la~~---~~~V~gvD~~~~~-----------~~~~-v~~~~~D~~~~~~~~~~~~~~~~~ 87 (191)
T 3dou_A 23 VRKGDAVIEIGSSPGGWTQVLNSL---ARKIISIDLQEME-----------EIAG-VRFIRCDIFKETIFDDIDRALREE 87 (191)
T ss_dssp SCTTCEEEEESCTTCHHHHHHTTT---CSEEEEEESSCCC-----------CCTT-CEEEECCTTSSSHHHHHHHHHHHH
T ss_pred CCCCCEEEEEeecCCHHHHHHHHc---CCcEEEEeccccc-----------cCCC-eEEEEccccCHHHHHHHHHHhhcc
Confidence 467899999999999999999886 6899999999852 2343 88999999874311 11
Q ss_pred --CCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHHHh
Q 009708 405 --VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLL 482 (528)
Q Consensus 405 --~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~l~ 482 (528)
++||+|++|+++..+|.. ..+......++..+++.+.++|||||.|+ |.++..++...+..+++
T Consensus 88 ~~~~~D~Vlsd~~~~~~g~~-----------~~d~~~~~~l~~~~l~~a~~~LkpGG~lv---~k~~~~~~~~~~~~~l~ 153 (191)
T 3dou_A 88 GIEKVDDVVSDAMAKVSGIP-----------SRDHAVSYQIGQRVMEIAVRYLRNGGNVL---LKQFQGDMTNDFIAIWR 153 (191)
T ss_dssp TCSSEEEEEECCCCCCCSCH-----------HHHHHHHHHHHHHHHHHHHHHEEEEEEEE---EEEECSTHHHHHHHHHG
T ss_pred cCCcceEEecCCCcCCCCCc-----------ccCHHHHHHHHHHHHHHHHHHccCCCEEE---EEEcCCCCHHHHHHHHH
Confidence 489999999988766651 12333445667889999999999999999 44445555556667776
Q ss_pred hC
Q 009708 483 RH 484 (528)
Q Consensus 483 ~~ 484 (528)
.+
T Consensus 154 ~~ 155 (191)
T 3dou_A 154 KN 155 (191)
T ss_dssp GG
T ss_pred Hh
Confidence 54
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.5e-14 Score=136.89 Aligned_cols=143 Identities=13% Similarity=0.129 Sum_probs=79.0
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---CCCCCCEE
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---STVKCDKV 410 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---~~~~fD~V 410 (528)
.++.+|||+|||+|..+..++... +..+++++|+++.+++.+++|+..++. +++++++|+.+.... ..++||+|
T Consensus 29 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~fD~i 105 (215)
T 4dzr_A 29 PSGTRVIDVGTGSGCIAVSIALAC-PGVSVTAVDLSMDALAVARRNAERFGA--VVDWAAADGIEWLIERAERGRPWHAI 105 (215)
T ss_dssp CTTEEEEEEESSBCHHHHHHHHHC-TTEEEEEEECC---------------------CCHHHHHHHHHHHHHTTCCBSEE
T ss_pred CCCCEEEEecCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHhCC--ceEEEEcchHhhhhhhhhccCcccEE
Confidence 678899999999999999999974 457999999999999999999999887 488999999874332 13689999
Q ss_pred EEcCCCCCCccccCCchhhccCCH----HHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHHHh
Q 009708 411 LLDAPCSGLGVLSKRADLRWNRRL----EDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLL 482 (528)
Q Consensus 411 l~D~Pcsg~G~~~~~pd~~~~~~~----~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~l~ 482 (528)
++|||+...+.+...+.......+ ..-......+..+++.+.++|||||++++.++.... .+.+..++.
T Consensus 106 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~---~~~~~~~l~ 178 (215)
T 4dzr_A 106 VSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGHNQ---ADEVARLFA 178 (215)
T ss_dssp EECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTTSC---HHHHHHHTG
T ss_pred EECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECCcc---HHHHHHHHH
Confidence 999999766554332111000000 000011223467899999999999995555554332 334455555
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=5.5e-14 Score=137.00 Aligned_cols=147 Identities=14% Similarity=0.138 Sum_probs=105.8
Q ss_pred ceeEee-cchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHH---cCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEE
Q 009708 315 GLCAVQ-DESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASC---LSGQGLVYAIDINKGRLRILNETAKLHQVNSVIR 390 (528)
Q Consensus 315 G~~~~Q-d~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~---~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~ 390 (528)
|....| .....++..++...++.+|||+|||+|..+..+++. +.+.++|+|+|+++.+++.++ ++.++++
T Consensus 60 ~~~~~~~p~~~~~l~~~l~~~~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~------~~~~~v~ 133 (236)
T 2bm8_A 60 GLRMLKDPDTQAVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA------SDMENIT 133 (236)
T ss_dssp TEECCSCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG------GGCTTEE
T ss_pred cccccCCHHHHHHHHHHHHhcCCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh------ccCCceE
Confidence 334445 333444555555455789999999999999999987 456789999999999998776 2224599
Q ss_pred EEcCccccc---cccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhc-cCcCCCEEEEEcC
Q 009708 391 TIHADLRTF---ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASL-LVKPGGVLVYSTC 466 (528)
Q Consensus 391 ~~~~D~~~~---~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~-~LkpGG~LvysTc 466 (528)
++++|+... ......+||+|++|... . + ...+|.++.+ +|||||+|++.++
T Consensus 134 ~~~gD~~~~~~l~~~~~~~fD~I~~d~~~---------~---------~-------~~~~l~~~~r~~LkpGG~lv~~d~ 188 (236)
T 2bm8_A 134 LHQGDCSDLTTFEHLREMAHPLIFIDNAH---------A---------N-------TFNIMKWAVDHLLEEGDYFIIEDM 188 (236)
T ss_dssp EEECCSSCSGGGGGGSSSCSSEEEEESSC---------S---------S-------HHHHHHHHHHHTCCTTCEEEECSC
T ss_pred EEECcchhHHHHHhhccCCCCEEEECCch---------H---------h-------HHHHHHHHHHhhCCCCCEEEEEeC
Confidence 999999874 22222379999998642 0 0 1236888886 9999999998654
Q ss_pred -CCCchhhHHHHHHHHhhCC-CceEecC
Q 009708 467 -SIDPEENEERVEAFLLRHP-EFSIDPA 492 (528)
Q Consensus 467 -s~~~~Ene~~v~~~l~~~~-~~~~~~~ 492 (528)
.+.+..+.+.+..+++.++ +|++...
T Consensus 189 ~~~~~~~~~~~~~~~l~~~~~~f~~~~~ 216 (236)
T 2bm8_A 189 IPYWYRYAPQLFSEYLGAFRDVLSMDML 216 (236)
T ss_dssp HHHHHHHCHHHHHHHHHTTTTTEEEETT
T ss_pred cccccccCHHHHHHHHHhCcccEEEcch
Confidence 3334556668889999998 7887654
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=7.6e-14 Score=135.49 Aligned_cols=92 Identities=25% Similarity=0.316 Sum_probs=77.4
Q ss_pred HHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCC
Q 009708 325 GLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 404 (528)
Q Consensus 325 ~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~ 404 (528)
.++..+....++.+|||+|||+|..+..++.. ..+|+|+|+|+.+++.+++|++.+|+..+++++++|+..+.. .
T Consensus 68 ~l~~~~~~~~~~~~vLD~gcG~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--~ 142 (241)
T 3gdh_A 68 HIAGRVSQSFKCDVVVDAFCGVGGNTIQFALT---GMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLAS--F 142 (241)
T ss_dssp HHHHHHHHHSCCSEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGG--G
T ss_pred HHHHHhhhccCCCEEEECccccCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcc--c
Confidence 33333333447889999999999999999985 479999999999999999999999996569999999998763 3
Q ss_pred CCCCEEEEcCCCCCCcc
Q 009708 405 VKCDKVLLDAPCSGLGV 421 (528)
Q Consensus 405 ~~fD~Vl~D~Pcsg~G~ 421 (528)
++||+|++||||.+.+.
T Consensus 143 ~~~D~v~~~~~~~~~~~ 159 (241)
T 3gdh_A 143 LKADVVFLSPPWGGPDY 159 (241)
T ss_dssp CCCSEEEECCCCSSGGG
T ss_pred CCCCEEEECCCcCCcch
Confidence 68999999999977554
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=6.2e-14 Score=138.38 Aligned_cols=128 Identities=21% Similarity=0.285 Sum_probs=99.7
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEE
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 412 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~ 412 (528)
+.++.+|||+|||+|..+..+++. +.++|+|+|+|+.+++.++++++..|++++++++++|+.+++. ..++||+|++
T Consensus 44 ~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~i~~ 120 (267)
T 3kkz_A 44 LTEKSLIADIGCGTGGQTMVLAGH--VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPF-RNEELDLIWS 120 (267)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHTT--CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCC-CTTCEEEEEE
T ss_pred CCCCCEEEEeCCCCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCC-CCCCEEEEEE
Confidence 677899999999999999999986 4569999999999999999999999998789999999987652 2478999998
Q ss_pred cCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHHH-hhCCC
Q 009708 413 DAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFL-LRHPE 486 (528)
Q Consensus 413 D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~l-~~~~~ 486 (528)
..+.... . ...+++.+.++|||||+++++++++........+..+. ..++.
T Consensus 121 ~~~~~~~-------------~----------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (267)
T 3kkz_A 121 EGAIYNI-------------G----------FERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWMDAYPE 172 (267)
T ss_dssp SSCGGGT-------------C----------HHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTT
T ss_pred cCCceec-------------C----------HHHHHHHHHHHcCCCCEEEEEEeeecCCCChHHHHHHHHHhCCC
Confidence 6554211 1 13469999999999999999988755443333333333 44443
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.48 E-value=9.4e-14 Score=134.70 Aligned_cols=108 Identities=17% Similarity=0.242 Sum_probs=89.2
Q ss_pred cCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc--CCCCCC
Q 009708 331 VDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN--STVKCD 408 (528)
Q Consensus 331 l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~--~~~~fD 408 (528)
+.++||++|||+|||+|..+.++|..+++.|+|+|+|+++.+++.++++++..+ | +..+.+|....... ....+|
T Consensus 73 l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~--n-i~~V~~d~~~p~~~~~~~~~vD 149 (233)
T 4df3_A 73 LPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRR--N-IFPILGDARFPEKYRHLVEGVD 149 (233)
T ss_dssp CCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCT--T-EEEEESCTTCGGGGTTTCCCEE
T ss_pred cCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhc--C-eeEEEEeccCccccccccceEE
Confidence 458999999999999999999999999999999999999999999998876643 3 78888888764332 246799
Q ss_pred EEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 409 KVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 409 ~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
.|++|.+... + ...++.++.++|||||+++++.
T Consensus 150 vVf~d~~~~~-----------------~-------~~~~l~~~~r~LKpGG~lvI~i 182 (233)
T 4df3_A 150 GLYADVAQPE-----------------Q-------AAIVVRNARFFLRDGGYMLMAI 182 (233)
T ss_dssp EEEECCCCTT-----------------H-------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEeccCCh-----------------h-------HHHHHHHHHHhccCCCEEEEEE
Confidence 9999987731 1 2346899999999999999764
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.4e-13 Score=130.74 Aligned_cols=108 Identities=14% Similarity=0.188 Sum_probs=85.5
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDA 414 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~ 414 (528)
++.+|||+|||+|..++.++.. +..+|+++|+|+.+++.+++|++.++++ +++++++|+.++.+...++||+|++||
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~--~~~~V~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~D~~~~~~~~~~~fD~V~~~~ 130 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSR--YAAGATLIEMDRAVSQQLIKNLATLKAG-NARVVNSNAMSFLAQKGTPHNIVFVDP 130 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHT--TCSEEEEECSCHHHHHHHHHHHHHTTCC-SEEEECSCHHHHHSSCCCCEEEEEECC
T ss_pred CCCeEEEeCCCcCHHHHHHHhc--CCCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHHHhhcCCCCCEEEECC
Confidence 5789999999999999987775 2359999999999999999999999985 499999999885543346899999999
Q ss_pred CCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHH--hccCcCCCEEEEEcCCC
Q 009708 415 PCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAA--SLLVKPGGVLVYSTCSI 468 (528)
Q Consensus 415 Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a--~~~LkpGG~LvysTcs~ 468 (528)
|+. .+. . ..+++.+ .++|+|||+|++++|+.
T Consensus 131 p~~-~~~---------------~-------~~~l~~l~~~~~L~pgG~l~i~~~~~ 163 (202)
T 2fpo_A 131 PFR-RGL---------------L-------EETINLLEDNGWLADEALIYVESEVE 163 (202)
T ss_dssp SSS-TTT---------------H-------HHHHHHHHHTTCEEEEEEEEEEEEGG
T ss_pred CCC-CCc---------------H-------HHHHHHHHhcCccCCCcEEEEEECCC
Confidence 952 111 1 1224444 45699999999888763
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=9.3e-14 Score=142.51 Aligned_cols=102 Identities=29% Similarity=0.448 Sum_probs=90.9
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEc
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLD 413 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D 413 (528)
.+|.+|||+|||+|+.++. +. +..+|+|+|+|+.+++.+++|++.+|+.++++++++|+.++. .+||+|++|
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~---~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~----~~fD~Vi~d 265 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK---NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD----VKGNRVIMN 265 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT---TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC----CCEEEEEEC
T ss_pred CCCCEEEEccCccCHHHHh-cc---CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc----CCCcEEEEC
Confidence 4788999999999999999 75 367999999999999999999999999656999999998876 679999999
Q ss_pred CCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCC
Q 009708 414 APCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSID 469 (528)
Q Consensus 414 ~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~ 469 (528)
||..+. +++..+.++|+|||.|++++|+..
T Consensus 266 pP~~~~--------------------------~~l~~~~~~L~~gG~l~~~~~~~~ 295 (336)
T 2yx1_A 266 LPKFAH--------------------------KFIDKALDIVEEGGVIHYYTIGKD 295 (336)
T ss_dssp CTTTGG--------------------------GGHHHHHHHEEEEEEEEEEEEESS
T ss_pred CcHhHH--------------------------HHHHHHHHHcCCCCEEEEEEeecC
Confidence 998531 358889999999999999999987
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.46 E-value=3e-13 Score=131.50 Aligned_cols=126 Identities=18% Similarity=0.206 Sum_probs=99.8
Q ss_pred eecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccc
Q 009708 319 VQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 398 (528)
Q Consensus 319 ~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~ 398 (528)
++.....++..++...++.+|||+|||+|..+..++..++..++|+++|+++.+++.++++++..|+.++++++++|+..
T Consensus 44 ~~~~~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~ 123 (239)
T 2hnk_A 44 ISPEEGQFLNILTKISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALE 123 (239)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHH
T ss_pred cCHHHHHHHHHHHHhhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHH
Confidence 34445556666666667889999999999999999998765689999999999999999999999998779999999876
Q ss_pred ccccC---------------C-CCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEE
Q 009708 399 FADNS---------------T-VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV 462 (528)
Q Consensus 399 ~~~~~---------------~-~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lv 462 (528)
..+.. . ++||+|++|... ... ..+++.+.++|+|||+|+
T Consensus 124 ~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~------------------~~~-------~~~l~~~~~~L~pgG~lv 178 (239)
T 2hnk_A 124 TLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADK------------------ENY-------PNYYPLILKLLKPGGLLI 178 (239)
T ss_dssp HHHHHHHCSSCCGGGTTTCCSTTCEEEEEECSCG------------------GGH-------HHHHHHHHHHEEEEEEEE
T ss_pred HHHHHHhhcccccccccccCCCCCcCEEEEeCCH------------------HHH-------HHHHHHHHHHcCCCeEEE
Confidence 43211 1 679999998432 111 245888999999999999
Q ss_pred EEcCCCC
Q 009708 463 YSTCSID 469 (528)
Q Consensus 463 ysTcs~~ 469 (528)
+.++.+.
T Consensus 179 ~~~~~~~ 185 (239)
T 2hnk_A 179 ADNVLWD 185 (239)
T ss_dssp EECSSGG
T ss_pred EEccccC
Confidence 9876543
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.2e-12 Score=121.58 Aligned_cols=121 Identities=20% Similarity=0.283 Sum_probs=99.8
Q ss_pred chHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCc-cEEEEcCcccccc
Q 009708 322 ESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS-VIRTIHADLRTFA 400 (528)
Q Consensus 322 ~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~-~i~~~~~D~~~~~ 400 (528)
..+..+...+...++.+|||+|||+|..+..++.. ..+++++|+++.+++.+++++..+++++ +++++++|+....
T Consensus 39 ~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~---~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~ 115 (194)
T 1dus_A 39 KGTKILVENVVVDKDDDILDLGCGYGVIGIALADE---VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENV 115 (194)
T ss_dssp HHHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTC
T ss_pred hHHHHHHHHcccCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhccc
Confidence 45667777788888999999999999999999876 5799999999999999999999999875 5899999998754
Q ss_pred ccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCC
Q 009708 401 DNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 468 (528)
Q Consensus 401 ~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~ 468 (528)
. .++||+|++++|... ... ....+++.+.++|+|||.+++.+++.
T Consensus 116 ~--~~~~D~v~~~~~~~~--------------~~~-------~~~~~l~~~~~~L~~gG~l~~~~~~~ 160 (194)
T 1dus_A 116 K--DRKYNKIITNPPIRA--------------GKE-------VLHRIIEEGKELLKDNGEIWVVIQTK 160 (194)
T ss_dssp T--TSCEEEEEECCCSTT--------------CHH-------HHHHHHHHHHHHEEEEEEEEEEEEST
T ss_pred c--cCCceEEEECCCccc--------------chh-------HHHHHHHHHHHHcCCCCEEEEEECCC
Confidence 3 468999999988731 011 23456999999999999999887664
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.45 E-value=7.7e-13 Score=135.39 Aligned_cols=125 Identities=19% Similarity=0.349 Sum_probs=95.3
Q ss_pred cceeEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcC---------
Q 009708 314 EGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQ--------- 384 (528)
Q Consensus 314 ~G~~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g--------- 384 (528)
.|....+......+...+++.+|.+|||+|||+|..+..++..+++.++|+++|+++.+++.+++|++..|
T Consensus 84 ~~~~~~~~~~~~~~l~~l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~ 163 (336)
T 2b25_A 84 RGTAITFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVE 163 (336)
T ss_dssp CSSCCCCHHHHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSS
T ss_pred CCCcccCHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhccccccccc
Confidence 34444444445666677788999999999999999999999876666899999999999999999998743
Q ss_pred -CCccEEEEcCcccccccc-CCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEE
Q 009708 385 -VNSVIRTIHADLRTFADN-STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV 462 (528)
Q Consensus 385 -~~~~i~~~~~D~~~~~~~-~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lv 462 (528)
...+++++++|+.+.... ..+.||+|++|+|... .++.++.++|||||+|+
T Consensus 164 ~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~~~~~~---------------------------~~l~~~~~~LkpgG~lv 216 (336)
T 2b25_A 164 EWPDNVDFIHKDISGATEDIKSLTFDAVALDMLNPH---------------------------VTLPVFYPHLKHGGVCA 216 (336)
T ss_dssp CCCCCEEEEESCTTCCC-------EEEEEECSSSTT---------------------------TTHHHHGGGEEEEEEEE
T ss_pred ccCCceEEEECChHHcccccCCCCeeEEEECCCCHH---------------------------HHHHHHHHhcCCCcEEE
Confidence 223599999999876422 2357999999977521 14888999999999998
Q ss_pred EEc
Q 009708 463 YST 465 (528)
Q Consensus 463 ysT 465 (528)
..+
T Consensus 217 ~~~ 219 (336)
T 2b25_A 217 VYV 219 (336)
T ss_dssp EEE
T ss_pred EEe
Confidence 543
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=3.8e-13 Score=133.11 Aligned_cols=124 Identities=22% Similarity=0.216 Sum_probs=94.7
Q ss_pred cchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccc
Q 009708 321 DESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 399 (528)
Q Consensus 321 d~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~ 399 (528)
+....++... +++|.+|||+|||+|..+..+++.+. ++.+|+|+|+|+.+++.++++++..+...+|+++++|+.++
T Consensus 58 ~~i~~l~~~~--~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~ 135 (261)
T 4gek_A 58 SMIGMLAERF--VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDI 135 (261)
T ss_dssp HHHHHHHHHH--CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTC
T ss_pred HHHHHHHHHh--CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccc
Confidence 3334444444 46899999999999999999998764 34599999999999999999999999887799999999887
Q ss_pred cccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCC
Q 009708 400 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSID 469 (528)
Q Consensus 400 ~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~ 469 (528)
+. +.||+|++.- ++.. ....+. ..+|+++.+.|||||+|+++.-...
T Consensus 136 ~~---~~~d~v~~~~------~l~~-------~~~~~~-------~~~l~~i~~~LkpGG~lii~e~~~~ 182 (261)
T 4gek_A 136 AI---ENASMVVLNF------TLQF-------LEPSER-------QALLDKIYQGLNPGGALVLSEKFSF 182 (261)
T ss_dssp CC---CSEEEEEEES------CGGG-------SCHHHH-------HHHHHHHHHHEEEEEEEEEEEEBCC
T ss_pred cc---cccccceeee------eeee-------cCchhH-------hHHHHHHHHHcCCCcEEEEEeccCC
Confidence 53 4699998742 1111 111221 3469999999999999998765443
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.44 E-value=2.5e-13 Score=125.94 Aligned_cols=113 Identities=19% Similarity=0.242 Sum_probs=88.5
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---CCCCCCE
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---STVKCDK 409 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---~~~~fD~ 409 (528)
..++.+|||+|||+|..+..+++. +..+|+++|+++.+++.+++|++.+++.++++++++|+.+.... ..++||+
T Consensus 42 ~~~~~~vLD~GcG~G~~~~~~~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~ 119 (187)
T 2fhp_A 42 YFDGGMALDLYSGSGGLAIEAVSR--GMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDL 119 (187)
T ss_dssp CCSSCEEEETTCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred hcCCCCEEEeCCccCHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCE
Confidence 357889999999999999998874 35799999999999999999999999866699999999875431 1468999
Q ss_pred EEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHH--HhccCcCCCEEEEEcCCCCc
Q 009708 410 VLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDA--ASLLVKPGGVLVYSTCSIDP 470 (528)
Q Consensus 410 Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~--a~~~LkpGG~LvysTcs~~~ 470 (528)
|++|+|+. .+ .... .+.. +.++|+|||++++++++...
T Consensus 120 i~~~~~~~-~~------------~~~~----------~~~~l~~~~~L~~gG~l~~~~~~~~~ 159 (187)
T 2fhp_A 120 VLLDPPYA-KQ------------EIVS----------QLEKMLERQLLTNEAVIVCETDKTVK 159 (187)
T ss_dssp EEECCCGG-GC------------CHHH----------HHHHHHHTTCEEEEEEEEEEEETTCC
T ss_pred EEECCCCC-ch------------hHHH----------HHHHHHHhcccCCCCEEEEEeCCccc
Confidence 99999962 00 0111 1222 38899999999998877543
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.43 E-value=5.4e-13 Score=138.77 Aligned_cols=131 Identities=15% Similarity=0.049 Sum_probs=101.9
Q ss_pred cchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCc--cEEEEcCcccc
Q 009708 321 DESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS--VIRTIHADLRT 398 (528)
Q Consensus 321 d~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~--~i~~~~~D~~~ 398 (528)
|..+.++...+...++.+|||+|||+|..++.++... +..+|+++|+|+.+++.+++|++.+|+.+ .++++.+|+..
T Consensus 208 d~~~~~ll~~l~~~~~~~VLDlGcG~G~~s~~la~~~-p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~ 286 (375)
T 4dcm_A 208 DIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS 286 (375)
T ss_dssp CHHHHHHHHTCCCSCCSEEEEETCTTCHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTT
T ss_pred cHHHHHHHHhCcccCCCeEEEEeCcchHHHHHHHHHC-CCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhc
Confidence 5567778888888888899999999999999999873 46799999999999999999999999763 47889999987
Q ss_pred ccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCch
Q 009708 399 FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPE 471 (528)
Q Consensus 399 ~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~ 471 (528)
... .++||+|++|||+.....+.. ....++++.+.++|||||++++++.+..+.
T Consensus 287 ~~~--~~~fD~Ii~nppfh~~~~~~~-----------------~~~~~~l~~~~~~LkpgG~l~iv~n~~~~~ 340 (375)
T 4dcm_A 287 GVE--PFRFNAVLCNPPFHQQHALTD-----------------NVAWEMFHHARRCLKINGELYIVANRHLDY 340 (375)
T ss_dssp TCC--TTCEEEEEECCCC-------C-----------------CHHHHHHHHHHHHEEEEEEEEEEEETTSCH
T ss_pred cCC--CCCeeEEEECCCcccCcccCH-----------------HHHHHHHHHHHHhCCCCcEEEEEEECCcCH
Confidence 432 368999999999842111100 012357999999999999999876555443
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=4.3e-13 Score=129.06 Aligned_cols=138 Identities=13% Similarity=0.058 Sum_probs=100.9
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccc--cCCCCCCEEEE
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD--NSTVKCDKVLL 412 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~--~~~~~fD~Vl~ 412 (528)
++.+|||+|||+|..+..+|+.. +...|+|+|+++.+++.++++++..|++| +.++++|+.++.. ...++||.|++
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~-p~~~v~giD~s~~~l~~a~~~~~~~~l~n-v~~~~~Da~~~l~~~~~~~~~d~v~~ 111 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDR-PEQDFLGIEVHSPGVGACLASAHEEGLSN-LRVMCHDAVEVLHKMIPDNSLRMVQL 111 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHHTTCSS-EEEECSCHHHHHHHHSCTTCEEEEEE
T ss_pred CCCeEEEEeeeChHHHHHHHHHC-CCCeEEEEEecHHHHHHHHHHHHHhCCCc-EEEEECCHHHHHHHHcCCCChheEEE
Confidence 57799999999999999999874 46799999999999999999999999987 9999999988533 23578999999
Q ss_pred cCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHHHhhCCCceEec
Q 009708 413 DAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDP 491 (528)
Q Consensus 413 D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~l~~~~~~~~~~ 491 (528)
+-|.. +.+....+.+. .|..+++.+.++|||||+|+++|-. ..-.+.+...+..+++|+...
T Consensus 112 ~~~~p----~~~~~~~~rr~----------~~~~~l~~~~r~LkpGG~l~i~td~---~~~~~~~~~~~~~~~~~~~~~ 173 (218)
T 3dxy_A 112 FFPDP----WHKARHNKRRI----------VQVPFAELVKSKLQLGGVFHMATDW---EPYAEHMLEVMSSIDGYKNLS 173 (218)
T ss_dssp ESCCC----CCSGGGGGGSS----------CSHHHHHHHHHHEEEEEEEEEEESC---HHHHHHHHHHHHTSTTEEECC
T ss_pred eCCCC----ccchhhhhhhh----------hhHHHHHHHHHHcCCCcEEEEEeCC---HHHHHHHHHHHHhCCCccccc
Confidence 73321 11111111110 1234789999999999999987743 222233445666777777654
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=2.2e-12 Score=124.40 Aligned_cols=127 Identities=14% Similarity=0.154 Sum_probs=100.4
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEE
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 412 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~ 412 (528)
+.+|++|||+|||+|..++.++.. .+.++|+|+|+++.+++.+++|++++|+.++|+++++|+....+. ..+||.|++
T Consensus 13 v~~g~~VlDIGtGsG~l~i~la~~-~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~-~~~~D~Ivi 90 (225)
T 3kr9_A 13 VSQGAILLDVGSDHAYLPIELVER-GQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEE-TDQVSVITI 90 (225)
T ss_dssp SCTTEEEEEETCSTTHHHHHHHHT-TSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG-GGCCCEEEE
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhccc-CcCCCEEEE
Confidence 457889999999999999999986 446799999999999999999999999998899999999754332 126999886
Q ss_pred cCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHHHhhCCCceEec
Q 009708 413 DAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDP 491 (528)
Q Consensus 413 D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~l~~~~~~~~~~ 491 (528)
.|.|- .+-.++|..+...|+++|+||++.. .+.+.+..+|.++ +|.+..
T Consensus 91 ----aG~Gg--------------------~~i~~Il~~~~~~L~~~~~lVlq~~-----~~~~~vr~~L~~~-Gf~i~~ 139 (225)
T 3kr9_A 91 ----AGMGG--------------------RLIARILEEGLGKLANVERLILQPN-----NREDDLRIWLQDH-GFQIVA 139 (225)
T ss_dssp ----EEECH--------------------HHHHHHHHHTGGGCTTCCEEEEEES-----SCHHHHHHHHHHT-TEEEEE
T ss_pred ----cCCCh--------------------HHHHHHHHHHHHHhCCCCEEEEECC-----CCHHHHHHHHHHC-CCEEEE
Confidence 23332 1224569999999999999998654 2556777888876 576654
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.42 E-value=5.8e-13 Score=129.61 Aligned_cols=128 Identities=20% Similarity=0.159 Sum_probs=98.1
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc--CCCCCCEE
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN--STVKCDKV 410 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~--~~~~fD~V 410 (528)
..++.+|||+|||+|..++.++.. .+.++|+|+|+|+.+++.++++++.+|+++ ++++++|+.++... ..++||+|
T Consensus 68 ~~~~~~vLDiG~G~G~~~~~la~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~~fD~V 145 (240)
T 1xdz_A 68 FNQVNTICDVGAGAGFPSLPIKIC-FPHLHVTIVDSLNKRITFLEKLSEALQLEN-TTFCHDRAETFGQRKDVRESYDIV 145 (240)
T ss_dssp GGGCCEEEEECSSSCTTHHHHHHH-CTTCEEEEEESCHHHHHHHHHHHHHHTCSS-EEEEESCHHHHTTCTTTTTCEEEE
T ss_pred cCCCCEEEEecCCCCHHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEeccHHHhcccccccCCccEE
Confidence 346789999999999999999975 346799999999999999999999999986 99999999886531 14689999
Q ss_pred EEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHHHhhCCCceEe
Q 009708 411 LLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSID 490 (528)
Q Consensus 411 l~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~l~~~~~~~~~ 490 (528)
+++... + ...+++.+.++|||||++++..+....++-++ +...+... +|++.
T Consensus 146 ~~~~~~-------------------~-------~~~~l~~~~~~LkpgG~l~~~~g~~~~~~~~~-~~~~l~~~-g~~~~ 197 (240)
T 1xdz_A 146 TARAVA-------------------R-------LSVLSELCLPLVKKNGLFVALKAASAEEELNA-GKKAITTL-GGELE 197 (240)
T ss_dssp EEECCS-------------------C-------HHHHHHHHGGGEEEEEEEEEEECC-CHHHHHH-HHHHHHHT-TEEEE
T ss_pred EEeccC-------------------C-------HHHHHHHHHHhcCCCCEEEEEeCCCchHHHHH-HHHHHHHc-CCeEe
Confidence 986521 1 23569999999999999998877665544333 33445544 45443
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.42 E-value=9.7e-13 Score=127.85 Aligned_cols=130 Identities=6% Similarity=0.075 Sum_probs=100.6
Q ss_pred cchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccc
Q 009708 321 DESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400 (528)
Q Consensus 321 d~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~ 400 (528)
......+...+++.++++|||+|||+|..+..+++. ..+|+++|+++.+++.++++++.+++..+++++++|+.+..
T Consensus 77 ~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 153 (248)
T 2yvl_A 77 PKDSFYIALKLNLNKEKRVLEFGTGSGALLAVLSEV---AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAE 153 (248)
T ss_dssp HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSC
T ss_pred chhHHHHHHhcCCCCCCEEEEeCCCccHHHHHHHHh---CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcc
Confidence 334456666778889999999999999999999987 57999999999999999999999998656999999998754
Q ss_pred ccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHH
Q 009708 401 DNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAF 480 (528)
Q Consensus 401 ~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~ 480 (528)
. ....||+|++|+|. | ..+++.+.++|+|||++++.+.+. +....+...
T Consensus 154 ~-~~~~~D~v~~~~~~---------~------------------~~~l~~~~~~L~~gG~l~~~~~~~---~~~~~~~~~ 202 (248)
T 2yvl_A 154 V-PEGIFHAAFVDVRE---------P------------------WHYLEKVHKSLMEGAPVGFLLPTA---NQVIKLLES 202 (248)
T ss_dssp C-CTTCBSEEEECSSC---------G------------------GGGHHHHHHHBCTTCEEEEEESSH---HHHHHHHHH
T ss_pred c-CCCcccEEEECCcC---------H------------------HHHHHHHHHHcCCCCEEEEEeCCH---HHHHHHHHH
Confidence 1 13579999998773 1 124788899999999999776443 222334445
Q ss_pred HhhC
Q 009708 481 LLRH 484 (528)
Q Consensus 481 l~~~ 484 (528)
+.++
T Consensus 203 l~~~ 206 (248)
T 2yvl_A 203 IENY 206 (248)
T ss_dssp STTT
T ss_pred HHhh
Confidence 5544
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.42 E-value=6.1e-13 Score=126.18 Aligned_cols=121 Identities=17% Similarity=0.159 Sum_probs=99.2
Q ss_pred cceeEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEc
Q 009708 314 EGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH 393 (528)
Q Consensus 314 ~G~~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~ 393 (528)
.|.+..+......+...+.+.++.+|||+|||+|..+..+++. .++|+++|+++.+++.++++++.+|+++ +++++
T Consensus 56 ~~~~~~~~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~-v~~~~ 131 (210)
T 3lbf_A 56 QGQTISQPYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHL---VQHVCSVERIKGLQWQARRRLKNLDLHN-VSTRH 131 (210)
T ss_dssp TSCEECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEE
T ss_pred CCCEeCCHHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEecCHHHHHHHHHHHHHcCCCc-eEEEE
Confidence 4556666666677778888899999999999999999999987 5799999999999999999999999885 99999
Q ss_pred CccccccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 394 ADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 394 ~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
+|+...... .++||+|+++..+.. - .+.+.++|||||+|+++...
T Consensus 132 ~d~~~~~~~-~~~~D~i~~~~~~~~------~----------------------~~~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 132 GDGWQGWQA-RAPFDAIIVTAAPPE------I----------------------PTALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp SCGGGCCGG-GCCEEEEEESSBCSS------C----------------------CTHHHHTEEEEEEEEEEECS
T ss_pred CCcccCCcc-CCCccEEEEccchhh------h----------------------hHHHHHhcccCcEEEEEEcC
Confidence 999875433 368999999855421 1 12467889999999987665
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=3.5e-13 Score=140.13 Aligned_cols=141 Identities=16% Similarity=0.164 Sum_probs=104.9
Q ss_pred HHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC
Q 009708 324 AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS 403 (528)
Q Consensus 324 s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~ 403 (528)
+..+..+. ..++.+|||+|||+|+.++.++.. ...++|+|+|+|+.+++.+++|++.+|+.+.++++++|+.++...
T Consensus 207 a~~l~~~~-~~~~~~vLD~gCGsG~~~i~~a~~-~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~- 283 (373)
T 3tm4_A 207 ANAMIELA-ELDGGSVLDPMCGSGTILIELALR-RYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQY- 283 (373)
T ss_dssp HHHHHHHH-TCCSCCEEETTCTTCHHHHHHHHT-TCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGT-
T ss_pred HHHHHHhh-cCCCCEEEEccCcCcHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcc-
Confidence 34444555 778899999999999999999986 334589999999999999999999999966799999999987643
Q ss_pred CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHHHhh
Q 009708 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLR 483 (528)
Q Consensus 404 ~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~l~~ 483 (528)
.++||+|++|||+.- + ......+..++.++++.+.++| ||.++|.+|+ .+.+...+.+
T Consensus 284 ~~~fD~Ii~npPyg~-----r---------~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~~------~~~~~~~~~~ 341 (373)
T 3tm4_A 284 VDSVDFAISNLPYGL-----K---------IGKKSMIPDLYMKFFNELAKVL--EKRGVFITTE------KKAIEEAIAE 341 (373)
T ss_dssp CSCEEEEEEECCCC--------------------CCHHHHHHHHHHHHHHHE--EEEEEEEESC------HHHHHHHHHH
T ss_pred cCCcCEEEECCCCCc-----c---------cCcchhHHHHHHHHHHHHHHHc--CCeEEEEECC------HHHHHHHHHH
Confidence 368999999999831 0 0111224456788899999988 7788888873 2334445544
Q ss_pred CCCceEe
Q 009708 484 HPEFSID 490 (528)
Q Consensus 484 ~~~~~~~ 490 (528)
. +|++.
T Consensus 342 ~-G~~~~ 347 (373)
T 3tm4_A 342 N-GFEII 347 (373)
T ss_dssp T-TEEEE
T ss_pred c-CCEEE
Confidence 3 45543
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=8e-13 Score=129.17 Aligned_cols=113 Identities=19% Similarity=0.282 Sum_probs=93.0
Q ss_pred CCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEE
Q 009708 332 DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVL 411 (528)
Q Consensus 332 ~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl 411 (528)
.+.++.+|||+|||+|..+..+++..+ ++|+|+|+|+.+++.+++++...|+.++++++++|+..++. ..++||+|+
T Consensus 43 ~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~fD~v~ 119 (257)
T 3f4k_A 43 ELTDDAKIADIGCGTGGQTLFLADYVK--GQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPF-QNEELDLIW 119 (257)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHCC--SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSS-CTTCEEEEE
T ss_pred cCCCCCeEEEeCCCCCHHHHHHHHhCC--CeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCC-CCCCEEEEE
Confidence 567788999999999999999999743 49999999999999999999999998889999999977653 247899999
Q ss_pred EcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCc
Q 009708 412 LDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDP 470 (528)
Q Consensus 412 ~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~ 470 (528)
+....... + ...+++.+.++|||||+++++++++..
T Consensus 120 ~~~~l~~~-------------~----------~~~~l~~~~~~L~pgG~l~~~~~~~~~ 155 (257)
T 3f4k_A 120 SEGAIYNI-------------G----------FERGMNEWSKYLKKGGFIAVSEASWFT 155 (257)
T ss_dssp EESCSCCC-------------C----------HHHHHHHHHTTEEEEEEEEEEEEEESS
T ss_pred ecChHhhc-------------C----------HHHHHHHHHHHcCCCcEEEEEEeeccC
Confidence 86443211 1 134689999999999999999876433
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.6e-12 Score=129.97 Aligned_cols=106 Identities=14% Similarity=0.106 Sum_probs=86.9
Q ss_pred hcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCE
Q 009708 330 VVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDK 409 (528)
Q Consensus 330 ~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~ 409 (528)
++.+++|++|||+|||+|+.+..++.... +++|+|+|+|+.+++.|++++++.|+ ++++++++|+.+++ .+.||+
T Consensus 117 la~l~~g~rVLDIGcG~G~~ta~~lA~~~-ga~V~gIDis~~~l~~Ar~~~~~~gl-~~v~~v~gDa~~l~---d~~FDv 191 (298)
T 3fpf_A 117 LGRFRRGERAVFIGGGPLPLTGILLSHVY-GMRVNVVEIEPDIAELSRKVIEGLGV-DGVNVITGDETVID---GLEFDV 191 (298)
T ss_dssp HTTCCTTCEEEEECCCSSCHHHHHHHHTT-CCEEEEEESSHHHHHHHHHHHHHHTC-CSEEEEESCGGGGG---GCCCSE
T ss_pred HcCCCCcCEEEEECCCccHHHHHHHHHcc-CCEEEEEECCHHHHHHHHHHHHhcCC-CCeEEEECchhhCC---CCCcCE
Confidence 56788999999999999988755444433 57999999999999999999999999 56999999999875 368999
Q ss_pred EEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 410 VLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 410 Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
|+++.-. + ...++++++.+.|||||+|++.+
T Consensus 192 V~~~a~~---------~----------------d~~~~l~el~r~LkPGG~Lvv~~ 222 (298)
T 3fpf_A 192 LMVAALA---------E----------------PKRRVFRNIHRYVDTETRIIYRT 222 (298)
T ss_dssp EEECTTC---------S----------------CHHHHHHHHHHHCCTTCEEEEEE
T ss_pred EEECCCc---------c----------------CHHHHHHHHHHHcCCCcEEEEEc
Confidence 9985321 1 12356999999999999999765
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.42 E-value=6.7e-13 Score=127.03 Aligned_cols=117 Identities=15% Similarity=0.140 Sum_probs=90.0
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc-CCCCCCEEEE
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCDKVLL 412 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~-~~~~fD~Vl~ 412 (528)
.++.+|||+|||+|..++.+|+.. +...|+|+|+|+.+++.++++++..|+++ ++++++|+..+... ..+.||.|++
T Consensus 37 ~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~giD~s~~~l~~a~~~~~~~~~~n-v~~~~~d~~~l~~~~~~~~~d~v~~ 114 (213)
T 2fca_A 37 NDNPIHIEVGTGKGQFISGMAKQN-PDINYIGIELFKSVIVTAVQKVKDSEAQN-VKLLNIDADTLTDVFEPGEVKRVYL 114 (213)
T ss_dssp SCCCEEEEECCTTSHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHHSCCSS-EEEECCCGGGHHHHCCTTSCCEEEE
T ss_pred CCCceEEEEecCCCHHHHHHHHHC-CCCCEEEEEechHHHHHHHHHHHHcCCCC-EEEEeCCHHHHHhhcCcCCcCEEEE
Confidence 357799999999999999999874 46799999999999999999999999976 99999999886432 2467999998
Q ss_pred cCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcC
Q 009708 413 DAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466 (528)
Q Consensus 413 D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTc 466 (528)
+.|.- ..+....+.+ + .+..+++.+.++|||||.|++.|-
T Consensus 115 ~~~~p----~~~~~~~~~r--------l--~~~~~l~~~~~~LkpgG~l~~~td 154 (213)
T 2fca_A 115 NFSDP----WPKKRHEKRR--------L--TYSHFLKKYEEVMGKGGSIHFKTD 154 (213)
T ss_dssp ESCCC----CCSGGGGGGS--------T--TSHHHHHHHHHHHTTSCEEEEEES
T ss_pred ECCCC----CcCccccccc--------c--CcHHHHHHHHHHcCCCCEEEEEeC
Confidence 75541 0010000000 0 145679999999999999998763
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.41 E-value=2.1e-12 Score=123.44 Aligned_cols=107 Identities=19% Similarity=0.215 Sum_probs=82.6
Q ss_pred cCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccc--cCCCCCC
Q 009708 331 VDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD--NSTVKCD 408 (528)
Q Consensus 331 l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~--~~~~~fD 408 (528)
+.+.+|++|||+|||+|..+..+++..+ .++|+|+|+|+.+++.+.++++.. . ++.++.+|+..... ...++||
T Consensus 53 ~~~~~g~~VLDlGcGtG~~~~~la~~~~-~~~V~gvD~s~~~l~~~~~~a~~~--~-~v~~~~~d~~~~~~~~~~~~~fD 128 (210)
T 1nt2_A 53 LKLRGDERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLELVRER--N-NIIPLLFDASKPWKYSGIVEKVD 128 (210)
T ss_dssp CCCCSSCEEEEETCTTSHHHHHHHHHTT-TSEEEEECCCHHHHHHHHHHHHHC--S-SEEEECSCTTCGGGTTTTCCCEE
T ss_pred cCCCCCCEEEEECCcCCHHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHhcC--C-CeEEEEcCCCCchhhccccccee
Confidence 3467899999999999999999999865 689999999999998877777654 3 37888999876421 1236899
Q ss_pred EEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 409 KVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 409 ~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
+|++|.+- + .. ...+++++.++|||||+|+++.
T Consensus 129 ~V~~~~~~---------~--------~~-------~~~~l~~~~r~LkpgG~l~i~~ 161 (210)
T 1nt2_A 129 LIYQDIAQ---------K--------NQ-------IEILKANAEFFLKEKGEVVIMV 161 (210)
T ss_dssp EEEECCCS---------T--------TH-------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEeccC---------h--------hH-------HHHHHHHHHHHhCCCCEEEEEE
Confidence 99998321 1 01 1234889999999999999873
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.41 E-value=3.9e-13 Score=131.60 Aligned_cols=122 Identities=16% Similarity=0.096 Sum_probs=91.2
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHc-CCCcEEEEEcCChHHHHHHHHHHHHc---CCCcc--------------------
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCL-SGQGLVYAIDINKGRLRILNETAKLH---QVNSV-------------------- 388 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~-~~~~~v~avD~s~~~l~~~~~n~~~~---g~~~~-------------------- 388 (528)
..++.+|||+|||+|..++.++..+ .+..+|+|+|+|+.+++.+++|+..+ ++.+.
T Consensus 49 ~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (250)
T 1o9g_A 49 GDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAA 128 (250)
T ss_dssp CCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred cCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhh
Confidence 3456799999999999999999863 23468999999999999999999877 65433
Q ss_pred -----EE-------------EEcCcccccccc----CCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHH
Q 009708 389 -----IR-------------TIHADLRTFADN----STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDE 446 (528)
Q Consensus 389 -----i~-------------~~~~D~~~~~~~----~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~ 446 (528)
++ ++++|+...... ...+||+|++|||+.....+.+ ......+..
T Consensus 129 ~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~-------------~~~~~~~~~ 195 (250)
T 1o9g_A 129 QAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEG-------------QVPGQPVAG 195 (250)
T ss_dssp HHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSS-------------CCCHHHHHH
T ss_pred hhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccc-------------cccccHHHH
Confidence 56 899998875421 2347999999999843222111 011234566
Q ss_pred HHHHHhccCcCCCEEEEEcCC
Q 009708 447 LLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 447 lL~~a~~~LkpGG~LvysTcs 467 (528)
+++.+.++|||||+|+++.++
T Consensus 196 ~l~~~~~~LkpgG~l~~~~~~ 216 (250)
T 1o9g_A 196 LLRSLASALPAHAVIAVTDRS 216 (250)
T ss_dssp HHHHHHHHSCTTCEEEEEESS
T ss_pred HHHHHHHhcCCCcEEEEeCcc
Confidence 799999999999999986554
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.41 E-value=1.2e-12 Score=125.01 Aligned_cols=117 Identities=17% Similarity=0.126 Sum_probs=90.4
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc-CCCCCCEEEE
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCDKVLL 412 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~-~~~~fD~Vl~ 412 (528)
.++.+|||+|||+|..+..++... +..+++|+|+++.+++.+++|++..|+++ ++++++|+..+... ..++||.|++
T Consensus 40 ~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~gvD~s~~~l~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~~D~i~~ 117 (214)
T 1yzh_A 40 NDNPIHVEVGSGKGAFVSGMAKQN-PDINYIGIDIQKSVLSYALDKVLEVGVPN-IKLLWVDGSDLTDYFEDGEIDRLYL 117 (214)
T ss_dssp SCCCEEEEESCTTSHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHHCCSS-EEEEECCSSCGGGTSCTTCCSEEEE
T ss_pred CCCCeEEEEccCcCHHHHHHHHHC-CCCCEEEEEcCHHHHHHHHHHHHHcCCCC-EEEEeCCHHHHHhhcCCCCCCEEEE
Confidence 457899999999999999999874 36799999999999999999999999865 99999999886532 2467999999
Q ss_pred cCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcC
Q 009708 413 DAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466 (528)
Q Consensus 413 D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTc 466 (528)
++|..-. +....+.+ -.+..+++.+.++|||||.|++.|-
T Consensus 118 ~~~~~~~----~~~~~~~~----------~~~~~~l~~~~~~LkpgG~l~~~~~ 157 (214)
T 1yzh_A 118 NFSDPWP----KKRHEKRR----------LTYKTFLDTFKRILPENGEIHFKTD 157 (214)
T ss_dssp ESCCCCC----SGGGGGGS----------TTSHHHHHHHHHHSCTTCEEEEEES
T ss_pred ECCCCcc----ccchhhhc----------cCCHHHHHHHHHHcCCCcEEEEEeC
Confidence 9774210 00000000 0245679999999999999998753
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=2.6e-12 Score=129.21 Aligned_cols=127 Identities=13% Similarity=0.110 Sum_probs=98.2
Q ss_pred HHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCC
Q 009708 326 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 405 (528)
Q Consensus 326 l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~ 405 (528)
.+...+.+.+|.+|||+|||+|..+..+++..+ .+|+|+|+|+.+++.+++++...|+.++++++++|+.++ .+
T Consensus 63 ~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~ 136 (302)
T 3hem_A 63 LALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD--VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF----DE 136 (302)
T ss_dssp HHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC----CC
T ss_pred HHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCC--CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc----CC
Confidence 455667788999999999999999999998753 789999999999999999999999987799999999876 37
Q ss_pred CCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCch
Q 009708 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPE 471 (528)
Q Consensus 406 ~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~ 471 (528)
+||+|++... +..-|+..-.....+ ...+++.+.++|||||++++.+.+....
T Consensus 137 ~fD~v~~~~~------~~~~~d~~~~~~~~~-------~~~~l~~~~~~LkpgG~l~i~~~~~~~~ 189 (302)
T 3hem_A 137 PVDRIVSLGA------FEHFADGAGDAGFER-------YDTFFKKFYNLTPDDGRMLLHTITIPDK 189 (302)
T ss_dssp CCSEEEEESC------GGGTTCCSSCCCTTH-------HHHHHHHHHHSSCTTCEEEEEEEECCCH
T ss_pred CccEEEEcch------HHhcCccccccchhH-------HHHHHHHHHHhcCCCcEEEEEEEeccCc
Confidence 8999997532 222211100000111 2456999999999999999988765543
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=7.4e-13 Score=130.06 Aligned_cols=122 Identities=13% Similarity=0.096 Sum_probs=96.2
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc--CCCCCCEE
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN--STVKCDKV 410 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~--~~~~fD~V 410 (528)
..++.+|||+|||+|..++.++... +..+|+++|+++.+++.+++|++.+|+.+ ++++++|+.++... ..++||+|
T Consensus 78 ~~~~~~vLDiG~G~G~~~i~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~l~~-v~~~~~d~~~~~~~~~~~~~fD~I 155 (249)
T 3g89_A 78 WQGPLRVLDLGTGAGFPGLPLKIVR-PELELVLVDATRKKVAFVERAIEVLGLKG-ARALWGRAEVLAREAGHREAYARA 155 (249)
T ss_dssp CCSSCEEEEETCTTTTTHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHTCSS-EEEEECCHHHHTTSTTTTTCEEEE
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCCCc-eEEEECcHHHhhcccccCCCceEE
Confidence 3568899999999999999999874 46899999999999999999999999987 99999999887642 24689999
Q ss_pred EEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHHHhh
Q 009708 411 LLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLR 483 (528)
Q Consensus 411 l~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~l~~ 483 (528)
++..-. ++ ..+++.+.++|||||++++..+....+|-+ .+...+..
T Consensus 156 ~s~a~~-------------------~~-------~~ll~~~~~~LkpgG~l~~~~g~~~~~e~~-~~~~~l~~ 201 (249)
T 3g89_A 156 VARAVA-------------------PL-------CVLSELLLPFLEVGGAAVAMKGPRVEEELA-PLPPALER 201 (249)
T ss_dssp EEESSC-------------------CH-------HHHHHHHGGGEEEEEEEEEEECSCCHHHHT-THHHHHHH
T ss_pred EECCcC-------------------CH-------HHHHHHHHHHcCCCeEEEEEeCCCcHHHHH-HHHHHHHH
Confidence 985321 11 346899999999999999887765554433 23344444
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.6e-12 Score=124.11 Aligned_cols=127 Identities=15% Similarity=0.195 Sum_probs=101.4
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEE
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 412 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~ 412 (528)
+.+|++|||+|||+|..++.++.. ++..+|+|+|+++.+++.+++|++++|+.++|+++++|+...... ..+||.|++
T Consensus 19 v~~g~~VlDIGtGsG~l~i~la~~-~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~-~~~~D~Ivi 96 (230)
T 3lec_A 19 VPKGARLLDVGSDHAYLPIFLLQM-GYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEE-ADNIDTITI 96 (230)
T ss_dssp SCTTEEEEEETCSTTHHHHHHHHT-TCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG-GGCCCEEEE
T ss_pred CCCCCEEEEECCchHHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcccc-ccccCEEEE
Confidence 457889999999999999999986 445789999999999999999999999998899999999886542 236999886
Q ss_pred cCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHHHhhCCCceEec
Q 009708 413 DAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDP 491 (528)
Q Consensus 413 D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~l~~~~~~~~~~ 491 (528)
.|.|- . +-.+||..+...|+++|+||.+.. .+.+.+..+|.++ +|.+..
T Consensus 97 ----aGmGg-------------~-------lI~~IL~~~~~~l~~~~~lIlqp~-----~~~~~lr~~L~~~-Gf~i~~ 145 (230)
T 3lec_A 97 ----CGMGG-------------R-------LIADILNNDIDKLQHVKTLVLQPN-----NREDDLRKWLAAN-DFEIVA 145 (230)
T ss_dssp ----EEECH-------------H-------HHHHHHHHTGGGGTTCCEEEEEES-----SCHHHHHHHHHHT-TEEEEE
T ss_pred ----eCCch-------------H-------HHHHHHHHHHHHhCcCCEEEEECC-----CChHHHHHHHHHC-CCEEEE
Confidence 23332 1 224469999999999999997653 2466788888887 576654
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=1.7e-12 Score=120.25 Aligned_cols=134 Identities=20% Similarity=0.271 Sum_probs=103.8
Q ss_pred eecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccc
Q 009708 319 VQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 398 (528)
Q Consensus 319 ~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~ 398 (528)
.++.....+...+.+.++.+|||+|||+|..+..++... .+|+++|+++.+++.++++++.+++..+++++++|+..
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~ 93 (192)
T 1l3i_A 17 TAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE 93 (192)
T ss_dssp CCHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH
T ss_pred ChHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc---CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHH
Confidence 344445566667788889999999999999999998763 79999999999999999999999985569999999877
Q ss_pred ccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHH
Q 009708 399 FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVE 478 (528)
Q Consensus 399 ~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~ 478 (528)
.... ...||+|+++.+.. ++ ..+++.+.++|+|||++++.+++. ++...+.
T Consensus 94 ~~~~-~~~~D~v~~~~~~~------------------~~-------~~~l~~~~~~l~~gG~l~~~~~~~---~~~~~~~ 144 (192)
T 1l3i_A 94 ALCK-IPDIDIAVVGGSGG------------------EL-------QEILRIIKDKLKPGGRIIVTAILL---ETKFEAM 144 (192)
T ss_dssp HHTT-SCCEEEEEESCCTT------------------CH-------HHHHHHHHHTEEEEEEEEEEECBH---HHHHHHH
T ss_pred hccc-CCCCCEEEECCchH------------------HH-------HHHHHHHHHhcCCCcEEEEEecCc---chHHHHH
Confidence 3222 14799999976641 11 346899999999999999887752 3334455
Q ss_pred HHHhhC
Q 009708 479 AFLLRH 484 (528)
Q Consensus 479 ~~l~~~ 484 (528)
.++.++
T Consensus 145 ~~l~~~ 150 (192)
T 1l3i_A 145 ECLRDL 150 (192)
T ss_dssp HHHHHT
T ss_pred HHHHHC
Confidence 666655
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.39 E-value=3.8e-12 Score=121.26 Aligned_cols=142 Identities=14% Similarity=0.188 Sum_probs=106.9
Q ss_pred HHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCC
Q 009708 325 GLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 404 (528)
Q Consensus 325 ~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~ 404 (528)
..+...+.+.++.+|||+|||+|..+..+++..++..+|+++|+++.+++.+++++...++++ ++++++|+..+.. ..
T Consensus 27 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-~~~~~~d~~~~~~-~~ 104 (219)
T 3dh0_A 27 EKVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKN-VEVLKSEENKIPL-PD 104 (219)
T ss_dssp HHHHHHHTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTT-EEEEECBTTBCSS-CS
T ss_pred HHHHHHhCCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCc-EEEEecccccCCC-CC
Confidence 345556677889999999999999999999986556799999999999999999999999885 9999999987652 24
Q ss_pred CCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCch---------hhHH
Q 009708 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPE---------ENEE 475 (528)
Q Consensus 405 ~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~---------Ene~ 475 (528)
++||+|++.... ..-++ ...+++.+.++|||||+++++++..... -..+
T Consensus 105 ~~fD~v~~~~~l------~~~~~----------------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~ 162 (219)
T 3dh0_A 105 NTVDFIFMAFTF------HELSE----------------PLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEW 162 (219)
T ss_dssp SCEEEEEEESCG------GGCSS----------------HHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHH
T ss_pred CCeeEEEeehhh------hhcCC----------------HHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHH
Confidence 689999975332 11111 1356999999999999999887653321 1234
Q ss_pred HHHHHHhhCCCceEec
Q 009708 476 RVEAFLLRHPEFSIDP 491 (528)
Q Consensus 476 ~v~~~l~~~~~~~~~~ 491 (528)
.+...+++. +|+...
T Consensus 163 ~~~~~l~~~-Gf~~~~ 177 (219)
T 3dh0_A 163 EVGLILEDA-GIRVGR 177 (219)
T ss_dssp HHHHHHHHT-TCEEEE
T ss_pred HHHHHHHHC-CCEEEE
Confidence 555666654 566544
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.38 E-value=5.9e-12 Score=122.63 Aligned_cols=126 Identities=10% Similarity=0.128 Sum_probs=100.2
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEE
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 412 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~ 412 (528)
+.+|++|||+|||+|..++.++.. ++..+|+|+|+++.+++.|++|++++|+.++|+++++|+...... ..+||.|++
T Consensus 19 v~~g~~VlDIGtGsG~l~i~la~~-~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~-~~~~D~Ivi 96 (244)
T 3gnl_A 19 ITKNERIADIGSDHAYLPCFAVKN-QTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEK-KDAIDTIVI 96 (244)
T ss_dssp CCSSEEEEEETCSTTHHHHHHHHT-TSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG-GGCCCEEEE
T ss_pred CCCCCEEEEECCccHHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCc-cccccEEEE
Confidence 457889999999999999999986 445689999999999999999999999998899999999876532 135999886
Q ss_pred cCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHHHhhCCCceEe
Q 009708 413 DAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSID 490 (528)
Q Consensus 413 D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~l~~~~~~~~~ 490 (528)
.|.|- . +-.++|..+...|+++|+||.+.. .+.+.+..+|.++ +|.+.
T Consensus 97 ----agmGg-------------~-------lI~~IL~~~~~~L~~~~~lIlq~~-----~~~~~lr~~L~~~-Gf~i~ 144 (244)
T 3gnl_A 97 ----AGMGG-------------T-------LIRTILEEGAAKLAGVTKLILQPN-----IAAWQLREWSEQN-NWLIT 144 (244)
T ss_dssp ----EEECH-------------H-------HHHHHHHHTGGGGTTCCEEEEEES-----SCHHHHHHHHHHH-TEEEE
T ss_pred ----eCCch-------------H-------HHHHHHHHHHHHhCCCCEEEEEcC-----CChHHHHHHHHHC-CCEEE
Confidence 23332 1 224469999999999999997653 2566777888776 56654
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.5e-11 Score=113.13 Aligned_cols=135 Identities=15% Similarity=0.282 Sum_probs=102.4
Q ss_pred eecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccc
Q 009708 319 VQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 398 (528)
Q Consensus 319 ~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~ 398 (528)
.++.....+...+...++.+|||+|||+|..+..++. +..+++++|+++.+++.++++++.+|+++ ++++++|+.+
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-~~~~~~d~~~ 94 (183)
T 2yxd_A 19 TKEEIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAK---RCKFVYAIDYLDGAIEVTKQNLAKFNIKN-CQIIKGRAED 94 (183)
T ss_dssp CCHHHHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHT---TSSEEEEEECSHHHHHHHHHHHHHTTCCS-EEEEESCHHH
T ss_pred CHHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEECCccc
Confidence 3344455666667778889999999999999999987 46799999999999999999999999865 9999999987
Q ss_pred ccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHH
Q 009708 399 FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVE 478 (528)
Q Consensus 399 ~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~ 478 (528)
... .++||+|+++++. + ...+++.+.++ |||.+++++|... +...+.
T Consensus 95 ~~~--~~~~D~i~~~~~~--------~------------------~~~~l~~~~~~--~gG~l~~~~~~~~---~~~~~~ 141 (183)
T 2yxd_A 95 VLD--KLEFNKAFIGGTK--------N------------------IEKIIEILDKK--KINHIVANTIVLE---NAAKII 141 (183)
T ss_dssp HGG--GCCCSEEEECSCS--------C------------------HHHHHHHHHHT--TCCEEEEEESCHH---HHHHHH
T ss_pred ccc--CCCCcEEEECCcc--------c------------------HHHHHHHHhhC--CCCEEEEEecccc---cHHHHH
Confidence 332 2689999998770 0 12357777777 9999999886532 233455
Q ss_pred HHHhhCCCceEec
Q 009708 479 AFLLRHPEFSIDP 491 (528)
Q Consensus 479 ~~l~~~~~~~~~~ 491 (528)
..++++. +.+..
T Consensus 142 ~~l~~~g-~~~~~ 153 (183)
T 2yxd_A 142 NEFESRG-YNVDA 153 (183)
T ss_dssp HHHHHTT-CEEEE
T ss_pred HHHHHcC-CeEEE
Confidence 6666664 55544
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.37 E-value=3.6e-13 Score=138.45 Aligned_cols=160 Identities=14% Similarity=0.148 Sum_probs=108.9
Q ss_pred ceeEeecchHHHHHHhc----CCCCCCeEEEeCCccchHHHHHHHHcCCC----cEEEEEcCChHHHHHHHHHHHHcCCC
Q 009708 315 GLCAVQDESAGLVVAVV----DPQPGQSIVDCCAAPGGKTLYMASCLSGQ----GLVYAIDINKGRLRILNETAKLHQVN 386 (528)
Q Consensus 315 G~~~~Qd~~s~l~~~~l----~~~~g~~VLDl~aG~G~kt~~la~~~~~~----~~v~avD~s~~~l~~~~~n~~~~g~~ 386 (528)
|.++..+..+.++..++ .+.++.+|||+|||+|++++.+++.+... .+|+|+|+++.+++.++.|+...|+.
T Consensus 106 g~~~TP~~i~~~~~~ll~~l~~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~ 185 (344)
T 2f8l_A 106 NHQMTPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQK 185 (344)
T ss_dssp GGCCCCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCC
T ss_pred CcCCChHHHHHHHHHHHHHhcCCCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCC
Confidence 55555554444444433 55677899999999999999999886532 78999999999999999999999883
Q ss_pred ccEEEEcCccccccccCCCCCCEEEEcCCCCCCccccCCchh--hccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 387 SVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADL--RWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 387 ~~i~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~--~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
+.++++|..... ...+||+|++|||++ .+.. ++. +|... ........+..++.++.++|||||++++.
T Consensus 186 --~~i~~~D~l~~~--~~~~fD~Ii~NPPfg---~~~~-~~~~~~~~~~--~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v 255 (344)
T 2f8l_A 186 --MTLLHQDGLANL--LVDPVDVVISDLPVG---YYPD-DENAKTFELC--REEGHSFAHFLFIEQGMRYTKPGGYLFFL 255 (344)
T ss_dssp --CEEEESCTTSCC--CCCCEEEEEEECCCS---EESC-HHHHTTSTTC--CSSSCEEHHHHHHHHHHHTEEEEEEEEEE
T ss_pred --ceEEECCCCCcc--ccCCccEEEECCCCC---CcCc-hhhhhhcccc--CCCCcchHHHHHHHHHHHHhCCCCEEEEE
Confidence 688999987643 236799999999973 2221 111 11100 00001123456799999999999999887
Q ss_pred cCC-CCchhhHHHHHHHHhhC
Q 009708 465 TCS-IDPEENEERVEAFLLRH 484 (528)
Q Consensus 465 Tcs-~~~~Ene~~v~~~l~~~ 484 (528)
+++ +........+..++.++
T Consensus 256 ~p~~~~~~~~~~~ir~~l~~~ 276 (344)
T 2f8l_A 256 VPDAMFGTSDFAKVDKFIKKN 276 (344)
T ss_dssp EEGGGGGSTTHHHHHHHHHHH
T ss_pred ECchhcCCchHHHHHHHHHhC
Confidence 633 33334445566666554
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.37 E-value=2.6e-12 Score=125.43 Aligned_cols=118 Identities=18% Similarity=0.138 Sum_probs=94.7
Q ss_pred HHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC
Q 009708 324 AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS 403 (528)
Q Consensus 324 s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~ 403 (528)
...+...+.+.++.+|||+|||+|..+..+++.. +.+|+++|+|+.+++.++++++..|+.++++++++|+.+++.
T Consensus 25 ~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~-- 100 (256)
T 1nkv_A 25 YATLGRVLRMKPGTRILDLGSGSGEMLCTWARDH--GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA-- 100 (256)
T ss_dssp HHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHT--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC--
T ss_pred HHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCc--
Confidence 3445566778889999999999999999999875 468999999999999999999999987679999999988754
Q ss_pred CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 404 ~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
.++||+|++... +...++ ...+|+++.++|||||+|++++..
T Consensus 101 ~~~fD~V~~~~~------~~~~~~----------------~~~~l~~~~r~LkpgG~l~~~~~~ 142 (256)
T 1nkv_A 101 NEKCDVAACVGA------TWIAGG----------------FAGAEELLAQSLKPGGIMLIGEPY 142 (256)
T ss_dssp SSCEEEEEEESC------GGGTSS----------------SHHHHHHHTTSEEEEEEEEEEEEE
T ss_pred CCCCCEEEECCC------hHhcCC----------------HHHHHHHHHHHcCCCeEEEEecCc
Confidence 478999997322 111111 134699999999999999987643
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=2.3e-12 Score=134.22 Aligned_cols=115 Identities=17% Similarity=0.274 Sum_probs=94.1
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEc
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLD 413 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D 413 (528)
.++.+|||+|||+|..+..+++. +.+|+++|+|+.+++.+++|++.++++ ++++++|+...... .++||+|++|
T Consensus 232 ~~~~~VLDlGcG~G~~~~~la~~---g~~V~gvDis~~al~~A~~n~~~~~~~--v~~~~~D~~~~~~~-~~~fD~Ii~n 305 (381)
T 3dmg_A 232 VRGRQVLDLGAGYGALTLPLARM---GAEVVGVEDDLASVLSLQKGLEANALK--AQALHSDVDEALTE-EARFDIIVTN 305 (381)
T ss_dssp TTTCEEEEETCTTSTTHHHHHHT---TCEEEEEESBHHHHHHHHHHHHHTTCC--CEEEECSTTTTSCT-TCCEEEEEEC
T ss_pred CCCCEEEEEeeeCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCCC--eEEEEcchhhcccc-CCCeEEEEEC
Confidence 46789999999999999999986 469999999999999999999999976 78999999886542 3689999999
Q ss_pred CCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCch
Q 009708 414 APCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPE 471 (528)
Q Consensus 414 ~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~ 471 (528)
||+...+.. .. .....+++.+.++|||||+++++++...+.
T Consensus 306 pp~~~~~~~----------~~-------~~~~~~l~~~~~~LkpGG~l~iv~n~~l~~ 346 (381)
T 3dmg_A 306 PPFHVGGAV----------IL-------DVAQAFVNVAAARLRPGGVFFLVSNPFLKY 346 (381)
T ss_dssp CCCCTTCSS----------CC-------HHHHHHHHHHHHHEEEEEEEEEEECTTSCH
T ss_pred Cchhhcccc----------cH-------HHHHHHHHHHHHhcCcCcEEEEEEcCCCCh
Confidence 998532211 01 123457999999999999999988876654
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.37 E-value=4.2e-12 Score=120.30 Aligned_cols=120 Identities=14% Similarity=0.141 Sum_probs=94.7
Q ss_pred HHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCC
Q 009708 325 GLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 404 (528)
Q Consensus 325 ~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~ 404 (528)
..+...+...++ +|||+|||+|..+..+++. +..+|+++|+++.+++.++++++..++.++++++++|+.+++. ..
T Consensus 34 ~~~~~~~~~~~~-~vLdiG~G~G~~~~~l~~~--~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~ 109 (219)
T 3dlc_A 34 ENIINRFGITAG-TCIDIGSGPGALSIALAKQ--SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPI-ED 109 (219)
T ss_dssp HHHHHHHCCCEE-EEEEETCTTSHHHHHHHHH--SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSS-CT
T ss_pred HHHHHhcCCCCC-EEEEECCCCCHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCC-Cc
Confidence 344555566666 9999999999999999987 3579999999999999999999999988779999999988652 24
Q ss_pred CCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCc
Q 009708 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDP 470 (528)
Q Consensus 405 ~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~ 470 (528)
++||+|++..... .-+ + ...+|+++.++|||||++++++....+
T Consensus 110 ~~~D~v~~~~~l~------~~~---------~-------~~~~l~~~~~~L~pgG~l~~~~~~~~~ 153 (219)
T 3dlc_A 110 NYADLIVSRGSVF------FWE---------D-------VATAFREIYRILKSGGKTYIGGGFGNK 153 (219)
T ss_dssp TCEEEEEEESCGG------GCS---------C-------HHHHHHHHHHHEEEEEEEEEEECCSSH
T ss_pred ccccEEEECchHh------hcc---------C-------HHHHHHHHHHhCCCCCEEEEEeccCcH
Confidence 6899999865431 111 1 234699999999999999987654444
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.37 E-value=1.5e-12 Score=127.30 Aligned_cols=139 Identities=17% Similarity=0.212 Sum_probs=98.4
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHc--------CCCccEEEEcCccccccc--c
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLH--------QVNSVIRTIHADLRTFAD--N 402 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~--------g~~~~i~~~~~D~~~~~~--~ 402 (528)
+.++.+|||+|||+|..++.++... +...|+|+|+|+.+++.++++++.+ ++.+ ++++++|+.+... .
T Consensus 47 ~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~n-v~~~~~D~~~~l~~~~ 124 (246)
T 2vdv_E 47 MTKKVTIADIGCGFGGLMIDLSPAF-PEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQN-INVLRGNAMKFLPNFF 124 (246)
T ss_dssp BSCCEEEEEETCTTSHHHHHHHHHS-TTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTT-EEEEECCTTSCGGGTS
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHhC-CCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCc-EEEEeccHHHHHHHhc
Confidence 3467799999999999999999874 4579999999999999999999887 7775 8999999987433 1
Q ss_pred CCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHHHh
Q 009708 403 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLL 482 (528)
Q Consensus 403 ~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~l~ 482 (528)
..+.+|.|+++-|..-. +....+.+. .+..++..+.++|+|||+|++.|- .++..+.+...+.
T Consensus 125 ~~~~~d~v~~~~p~p~~----k~~~~~~r~----------~~~~~l~~~~~~LkpgG~l~~~td---~~~~~~~~~~~~~ 187 (246)
T 2vdv_E 125 EKGQLSKMFFCFPDPHF----KQRKHKARI----------ITNTLLSEYAYVLKEGGVVYTITD---VKDLHEWMVKHLE 187 (246)
T ss_dssp CTTCEEEEEEESCCCC----------CSSC----------CCHHHHHHHHHHEEEEEEEEEEES---CHHHHHHHHHHHH
T ss_pred cccccCEEEEECCCccc----ccchhHHhh----------ccHHHHHHHHHHcCCCCEEEEEec---cHHHHHHHHHHHH
Confidence 24679999876444210 000000000 134679999999999999997653 2333444555666
Q ss_pred hCCCceEe
Q 009708 483 RHPEFSID 490 (528)
Q Consensus 483 ~~~~~~~~ 490 (528)
.++.|+..
T Consensus 188 ~~~~~~~~ 195 (246)
T 2vdv_E 188 EHPLFERL 195 (246)
T ss_dssp HSTTEEEC
T ss_pred hCcCeEec
Confidence 77766554
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.37 E-value=3.1e-12 Score=129.91 Aligned_cols=117 Identities=13% Similarity=0.164 Sum_probs=95.9
Q ss_pred ecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccc
Q 009708 320 QDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 399 (528)
Q Consensus 320 Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~ 399 (528)
|......+...+.+.+|++|||+|||+|..+..+++.....++|+++|+++.+++.++++++..|+++ ++++++|+.+.
T Consensus 60 ~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~-v~~~~~d~~~~ 138 (317)
T 1dl5_A 60 QPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIEN-VIFVCGDGYYG 138 (317)
T ss_dssp CHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEESCGGGC
T ss_pred CHHHHHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCC-eEEEECChhhc
Confidence 44455666777888999999999999999999999885445789999999999999999999999987 99999999875
Q ss_pred cccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcC
Q 009708 400 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466 (528)
Q Consensus 400 ~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTc 466 (528)
... .++||+|+++++....+ +.+.++|||||+++++..
T Consensus 139 ~~~-~~~fD~Iv~~~~~~~~~----------------------------~~~~~~LkpgG~lvi~~~ 176 (317)
T 1dl5_A 139 VPE-FSPYDVIFVTVGVDEVP----------------------------ETWFTQLKEGGRVIVPIN 176 (317)
T ss_dssp CGG-GCCEEEEEECSBBSCCC----------------------------HHHHHHEEEEEEEEEEBC
T ss_pred ccc-CCCeEEEEEcCCHHHHH----------------------------HHHHHhcCCCcEEEEEEC
Confidence 432 36799999998874211 345678999999998743
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.36 E-value=4.4e-12 Score=124.17 Aligned_cols=85 Identities=9% Similarity=0.127 Sum_probs=70.0
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccc-ccccC----CCCCCE
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT-FADNS----TVKCDK 409 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~-~~~~~----~~~fD~ 409 (528)
++.+|||+|||+|..+..++.... ..+|+|+|+|+.+++.+++|++.+++.++++++++|+.+ +.... ..+||+
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~ 143 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLN-GWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDF 143 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred CCCEEEEeCCChhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccE
Confidence 567999999999999999988753 479999999999999999999999998779999999765 22111 157999
Q ss_pred EEEcCCCCCCc
Q 009708 410 VLLDAPCSGLG 420 (528)
Q Consensus 410 Vl~D~Pcsg~G 420 (528)
|++|||+...+
T Consensus 144 i~~npp~~~~~ 154 (254)
T 2h00_A 144 CMCNPPFFANQ 154 (254)
T ss_dssp EEECCCCC---
T ss_pred EEECCCCccCc
Confidence 99999997654
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.8e-12 Score=122.50 Aligned_cols=124 Identities=19% Similarity=0.192 Sum_probs=98.5
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEE
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 412 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~ 412 (528)
+.++.+|||+|||+|..+..+++. +..+|+++|+++.+++.++++++..++.+ ++++++|+.... .++||+|++
T Consensus 58 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~---~~~fD~i~~ 131 (205)
T 3grz_A 58 MVKPLTVADVGTGSGILAIAAHKL--GAKSVLATDISDESMTAAEENAALNGIYD-IALQKTSLLADV---DGKFDLIVA 131 (205)
T ss_dssp CSSCCEEEEETCTTSHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHTTCCC-CEEEESSTTTTC---CSCEEEEEE
T ss_pred ccCCCEEEEECCCCCHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHcCCCc-eEEEeccccccC---CCCceEEEE
Confidence 567889999999999999998874 45699999999999999999999999987 899999997754 368999999
Q ss_pred cCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHHHhhCCCceEec
Q 009708 413 DAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDP 491 (528)
Q Consensus 413 D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~l~~~~~~~~~~ 491 (528)
+++. .. ...+++.+.++|||||++++++... +..+.+...+.+. +|+...
T Consensus 132 ~~~~------------------~~-------~~~~l~~~~~~L~~gG~l~~~~~~~---~~~~~~~~~~~~~-Gf~~~~ 181 (205)
T 3grz_A 132 NILA------------------EI-------LLDLIPQLDSHLNEDGQVIFSGIDY---LQLPKIEQALAEN-SFQIDL 181 (205)
T ss_dssp ESCH------------------HH-------HHHHGGGSGGGEEEEEEEEEEEEEG---GGHHHHHHHHHHT-TEEEEE
T ss_pred CCcH------------------HH-------HHHHHHHHHHhcCCCCEEEEEecCc---ccHHHHHHHHHHc-CCceEE
Confidence 8765 11 2457999999999999999865432 2334455666654 566554
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.35 E-value=5.8e-13 Score=141.75 Aligned_cols=144 Identities=17% Similarity=0.167 Sum_probs=110.3
Q ss_pred cceeEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcC------------CCcEEEEEcCChHHHHHHHHHHH
Q 009708 314 EGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLS------------GQGLVYAIDINKGRLRILNETAK 381 (528)
Q Consensus 314 ~G~~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~------------~~~~v~avD~s~~~l~~~~~n~~ 381 (528)
.|.|+.....+.+++.++.+.++.+|||.|||+|++++.+++.+. ....++|+|+++.+++.++.|+.
T Consensus 150 ~G~fyTP~~v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~ 229 (445)
T 2okc_A 150 AGQYFTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLY 229 (445)
T ss_dssp CGGGCCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHH
T ss_pred CCcccCcHHHHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHH
Confidence 566777777788888899999999999999999999999988652 13579999999999999999999
Q ss_pred HcCCCc-cEEEEcCccccccccCCCCCCEEEEcCCCCCCccccCC---chhhccCCHHHHHHHHHHHHHHHHHHhccCcC
Q 009708 382 LHQVNS-VIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKR---ADLRWNRRLEDMEELKILQDELLDAASLLVKP 457 (528)
Q Consensus 382 ~~g~~~-~i~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~---pd~~~~~~~~~~~~l~~~q~~lL~~a~~~Lkp 457 (528)
.+|+.. .+.++++|....... .+||+|++|||+++....... .+..+..+ ..+..++.++.++|||
T Consensus 230 l~g~~~~~~~i~~gD~l~~~~~--~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~--------~~~~~fl~~~~~~Lk~ 299 (445)
T 2okc_A 230 LHGIGTDRSPIVCEDSLEKEPS--TLVDVILANPPFGTRPAGSVDINRPDFYVETK--------NNQLNFLQHMMLMLKT 299 (445)
T ss_dssp HTTCCSSCCSEEECCTTTSCCS--SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCS--------CHHHHHHHHHHHHEEE
T ss_pred HhCCCcCCCCEeeCCCCCCccc--CCcCEEEECCCCCCcccccchhhHhhcCCCCc--------chHHHHHHHHHHHhcc
Confidence 999852 367889998775432 489999999999875443211 11111111 1245679999999999
Q ss_pred CCEEEEEcCC
Q 009708 458 GGVLVYSTCS 467 (528)
Q Consensus 458 GG~LvysTcs 467 (528)
||++++.++.
T Consensus 300 gG~~a~V~p~ 309 (445)
T 2okc_A 300 GGRAAVVLPD 309 (445)
T ss_dssp EEEEEEEEEH
T ss_pred CCEEEEEECC
Confidence 9999988764
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.35 E-value=5.3e-12 Score=119.38 Aligned_cols=126 Identities=21% Similarity=0.270 Sum_probs=93.8
Q ss_pred CCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEE
Q 009708 332 DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVL 411 (528)
Q Consensus 332 ~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl 411 (528)
.+.++.+|||+|||+|..+..++.. +..+|+|+|+++.+++.+++|++.+++ +++++++|+.+++ .+||+|+
T Consensus 46 ~~~~~~~vlD~g~G~G~~~~~l~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~----~~~D~v~ 117 (207)
T 1wy7_A 46 GDIEGKVVADLGAGTGVLSYGALLL--GAKEVICVEVDKEAVDVLIENLGEFKG--KFKVFIGDVSEFN----SRVDIVI 117 (207)
T ss_dssp TSSTTCEEEEETCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHTGGGTT--SEEEEESCGGGCC----CCCSEEE
T ss_pred CCCCcCEEEEeeCCCCHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHHHHcCC--CEEEEECchHHcC----CCCCEEE
Confidence 4567889999999999999999875 345899999999999999999999888 3899999998863 4799999
Q ss_pred EcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHHHhhCCCceEec
Q 009708 412 LDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDP 491 (528)
Q Consensus 412 ~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~l~~~~~~~~~~ 491 (528)
+|||+... ++.. ...+++.+.+++ || +|+.| +.+.++.+.+..++.++ ++++..
T Consensus 118 ~~~p~~~~---~~~~-----------------~~~~l~~~~~~l--~~--~~~~~-~~~~~~~~~~~~~l~~~-g~~~~~ 171 (207)
T 1wy7_A 118 MNPPFGSQ---RKHA-----------------DRPFLLKAFEIS--DV--VYSIH-LAKPEVRRFIEKFSWEH-GFVVTH 171 (207)
T ss_dssp ECCCCSSS---STTT-----------------THHHHHHHHHHC--SE--EEEEE-ECCHHHHHHHHHHHHHT-TEEEEE
T ss_pred EcCCCccc---cCCc-----------------hHHHHHHHHHhc--Cc--EEEEE-eCCcCCHHHHHHHHHHC-CCeEEE
Confidence 99998421 1111 123477777777 43 55666 33455666677777765 455443
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=4.9e-12 Score=122.79 Aligned_cols=122 Identities=13% Similarity=0.179 Sum_probs=99.3
Q ss_pred ecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccc
Q 009708 320 QDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 399 (528)
Q Consensus 320 Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~ 399 (528)
|++++..++..+++.++.+|||+|||+|..+..++.. ..+|+++|+++.+++.++++++..|+++ ++++++|+..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~ 81 (239)
T 1xxl_A 6 HHHSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPY---VQECIGVDATKEMVEVASSFAQEKGVEN-VRFQQGTAESL 81 (239)
T ss_dssp CHHHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHHHHHHHHTCCS-EEEEECBTTBC
T ss_pred cCCCcchHHHHhCcCCCCEEEEEccCcCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCCCC-eEEEecccccC
Confidence 6778888889999999999999999999999999876 3599999999999999999999999875 89999999876
Q ss_pred cccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCC
Q 009708 400 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 468 (528)
Q Consensus 400 ~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~ 468 (528)
+. ..++||+|++.... ..-+ + ...+|.++.++|||||+++++++..
T Consensus 82 ~~-~~~~fD~v~~~~~l------~~~~---------~-------~~~~l~~~~~~LkpgG~l~~~~~~~ 127 (239)
T 1xxl_A 82 PF-PDDSFDIITCRYAA------HHFS---------D-------VRKAVREVARVLKQDGRFLLVDHYA 127 (239)
T ss_dssp CS-CTTCEEEEEEESCG------GGCS---------C-------HHHHHHHHHHHEEEEEEEEEEEECB
T ss_pred CC-CCCcEEEEEECCch------hhcc---------C-------HHHHHHHHHHHcCCCcEEEEEEcCC
Confidence 42 24689999975322 1111 1 1346899999999999999876543
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.35 E-value=1.4e-12 Score=119.04 Aligned_cols=107 Identities=18% Similarity=0.162 Sum_probs=83.9
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC---CCCCCEEE
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS---TVKCDKVL 411 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~---~~~fD~Vl 411 (528)
++.+|||+|||+|..+..+++. ...|+++|+|+.+++.+++|++.+++ +++++++|+.+..... .++||+|+
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~D~i~ 115 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASE---GWEAVLVEKDPEAVRLLKENVRRTGL--GARVVALPVEVFLPEAKAQGERFTVAF 115 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHT---TCEEEEECCCHHHHHHHHHHHHHHTC--CCEEECSCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEeCCCcCHHHHHHHHC---CCeEEEEeCCHHHHHHHHHHHHHcCC--ceEEEeccHHHHHHhhhccCCceEEEE
Confidence 6789999999999999999986 23499999999999999999999988 3899999998753321 24799999
Q ss_pred EcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHH--hccCcCCCEEEEEcCCCCc
Q 009708 412 LDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAA--SLLVKPGGVLVYSTCSIDP 470 (528)
Q Consensus 412 ~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a--~~~LkpGG~LvysTcs~~~ 470 (528)
+|+|+. +. . . ++++.. .++|||||++++++++...
T Consensus 116 ~~~~~~--~~---~---------~----------~~~~~~~~~~~L~~gG~~~~~~~~~~~ 152 (171)
T 1ws6_A 116 MAPPYA--MD---L---------A----------ALFGELLASGLVEAGGLYVLQHPKDLY 152 (171)
T ss_dssp ECCCTT--SC---T---------T----------HHHHHHHHHTCEEEEEEEEEEEETTSC
T ss_pred ECCCCc--hh---H---------H----------HHHHHHHhhcccCCCcEEEEEeCCccC
Confidence 999974 11 0 0 123333 5999999999988776443
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=2.3e-12 Score=130.39 Aligned_cols=122 Identities=14% Similarity=0.181 Sum_probs=97.4
Q ss_pred ecchHHHHHHhcC-CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccc
Q 009708 320 QDESAGLVVAVVD-PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 398 (528)
Q Consensus 320 Qd~~s~l~~~~l~-~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~ 398 (528)
++.....+...+. +.++.+|||+|||+|..+..+++.. +.+|+|+|+++.+++.++++++..|+.++++++++|+.+
T Consensus 101 ~~~~~~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 178 (312)
T 3vc1_A 101 ESAQAEFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRF--GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLD 178 (312)
T ss_dssp HHHHHHHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTS
T ss_pred HHHHHHHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhc
Confidence 3334445666666 7889999999999999999999874 468999999999999999999999998779999999987
Q ss_pred ccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 399 FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 399 ~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
++. ..++||+|++.-.. .. .. +..+|+.+.++|||||+|++.+..
T Consensus 179 ~~~-~~~~fD~V~~~~~l------~~-------~~----------~~~~l~~~~~~LkpgG~l~~~~~~ 223 (312)
T 3vc1_A 179 TPF-DKGAVTASWNNEST------MY-------VD----------LHDLFSEHSRFLKVGGRYVTITGC 223 (312)
T ss_dssp CCC-CTTCEEEEEEESCG------GG-------SC----------HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CCC-CCCCEeEEEECCch------hh-------CC----------HHHHHHHHHHHcCCCcEEEEEEcc
Confidence 652 24789999974221 11 01 355799999999999999988754
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.34 E-value=6e-12 Score=118.36 Aligned_cols=126 Identities=14% Similarity=0.162 Sum_probs=89.0
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHcCC-CcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccc----------
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD---------- 401 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~~~-~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~---------- 401 (528)
+.++.+|||+|||+|+++..+++.+++ .++|+|+|+++.. ..++ ++++++|+.....
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~~~~-v~~~~~d~~~~~~~~~~~~~~i~ 87 (201)
T 2plw_A 20 LKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------PIPN-VYFIQGEIGKDNMNNIKNINYID 87 (201)
T ss_dssp CCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------CCTT-CEEEECCTTTTSSCCC-------
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------CCCC-ceEEEccccchhhhhhccccccc
Confidence 467889999999999999999998653 5899999999831 2343 7889999877540
Q ss_pred --------------cCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 402 --------------NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 402 --------------~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
....+||+|++|+++...|. ...+......++..++..+.++|||||.+++.+..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~-----------~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 156 (201)
T 2plw_A 88 NMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGN-----------KIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYL 156 (201)
T ss_dssp ----CHHHHHHHHHHTTCCEEEEEECCCCCCCSC-----------HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred cccchhhHHHHHhhcCCCcccEEEeCCCcCCCCC-----------cccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeC
Confidence 12358999999976643332 01233334456778899999999999999975432
Q ss_pred CCchhhHHHHHHHHhhC
Q 009708 468 IDPEENEERVEAFLLRH 484 (528)
Q Consensus 468 ~~~~Ene~~v~~~l~~~ 484 (528)
.++...+...+..+
T Consensus 157 ---~~~~~~l~~~l~~~ 170 (201)
T 2plw_A 157 ---GSQTNNLKTYLKGM 170 (201)
T ss_dssp ---STTHHHHHHHHHTT
T ss_pred ---CCCHHHHHHHHHHH
Confidence 23334455566553
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=6.5e-12 Score=119.48 Aligned_cols=116 Identities=16% Similarity=0.179 Sum_probs=90.2
Q ss_pred hHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc
Q 009708 323 SAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 402 (528)
Q Consensus 323 ~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~ 402 (528)
-..++...+...++.+|||+|||+|..+..+++. ..+|+|+|+++.+++.+++++...+ +++++++|+.++.
T Consensus 39 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~d~~~~~-- 110 (216)
T 3ofk_A 39 HTQLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPH---CKRLTVIDVMPRAIGRACQRTKRWS---HISWAATDILQFS-- 110 (216)
T ss_dssp HHHHHHHHTTTSSEEEEEEECCTTSHHHHHHGGG---EEEEEEEESCHHHHHHHHHHTTTCS---SEEEEECCTTTCC--
T ss_pred HHHHHHHHcccCCCCcEEEEcCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHhcccCC---CeEEEEcchhhCC--
Confidence 3445565667778889999999999999999876 3689999999999999999887654 4899999998876
Q ss_pred CCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 403 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 403 ~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
..++||+|++.... ..-+ ++..+ ..+|..+.++|||||++++++
T Consensus 111 ~~~~fD~v~~~~~l------~~~~------~~~~~-------~~~l~~~~~~L~pgG~l~~~~ 154 (216)
T 3ofk_A 111 TAELFDLIVVAEVL------YYLE------DMTQM-------RTAIDNMVKMLAPGGHLVFGS 154 (216)
T ss_dssp CSCCEEEEEEESCG------GGSS------SHHHH-------HHHHHHHHHTEEEEEEEEEEE
T ss_pred CCCCccEEEEccHH------HhCC------CHHHH-------HHHHHHHHHHcCCCCEEEEEe
Confidence 34789999985222 2211 12222 346999999999999999876
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.33 E-value=5.5e-12 Score=120.02 Aligned_cols=124 Identities=16% Similarity=0.177 Sum_probs=97.2
Q ss_pred cceeEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEc
Q 009708 314 EGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH 393 (528)
Q Consensus 314 ~G~~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~ 393 (528)
.|....+......+...+.+.++.+|||+|||+|..+..++...++.++|+++|+++.+++.+++++...|+++ +++++
T Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-v~~~~ 134 (215)
T 2yxe_A 56 YGQTISAIHMVGMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDN-VIVIV 134 (215)
T ss_dssp TTEEECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTT-EEEEE
T ss_pred CCcEeCcHHHHHHHHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-eEEEE
Confidence 34444444455566677788889999999999999999999986445799999999999999999999999886 89999
Q ss_pred CccccccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 394 ADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 394 ~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
+|+..... ...+||+|+++.+... +.+.+.++|||||+|++++.+
T Consensus 135 ~d~~~~~~-~~~~fD~v~~~~~~~~----------------------------~~~~~~~~L~pgG~lv~~~~~ 179 (215)
T 2yxe_A 135 GDGTLGYE-PLAPYDRIYTTAAGPK----------------------------IPEPLIRQLKDGGKLLMPVGR 179 (215)
T ss_dssp SCGGGCCG-GGCCEEEEEESSBBSS----------------------------CCHHHHHTEEEEEEEEEEESS
T ss_pred CCcccCCC-CCCCeeEEEECCchHH----------------------------HHHHHHHHcCCCcEEEEEECC
Confidence 99865332 1367999998766521 013678899999999977644
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=4.1e-12 Score=123.65 Aligned_cols=139 Identities=15% Similarity=0.200 Sum_probs=96.6
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHH------cCCCccEEEEcCcccc-ccc-cCCC
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKL------HQVNSVIRTIHADLRT-FAD-NSTV 405 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~------~g~~~~i~~~~~D~~~-~~~-~~~~ 405 (528)
.++.+|||+|||+|..+..+|... +...|+|+|+++.+++.++++++. .++.| +.++++|+.. +.. ...+
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~n-v~~~~~d~~~~l~~~~~~~ 122 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLF-PDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQN-IACLRSNAMKHLPNFFYKG 122 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGS-TTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTT-EEEEECCTTTCHHHHCCTT
T ss_pred CCCCeEEEEccCCcHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCe-EEEEECcHHHhhhhhCCCc
Confidence 456789999999999999999864 467999999999999999998875 45665 9999999987 332 1246
Q ss_pred CCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHHHhhCC
Q 009708 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHP 485 (528)
Q Consensus 406 ~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~l~~~~ 485 (528)
.||.|++..|.- |........+ -.+..+|+.+.++|||||.|++.|+. .+..+.+...+..++
T Consensus 123 ~~D~v~~~~~dp------------~~k~~h~krr--~~~~~~l~~~~~~LkpGG~l~~~td~---~~~~~~~~~~l~~~~ 185 (235)
T 3ckk_A 123 QLTKMFFLFPDP------------HFKRTKHKWR--IISPTLLAEYAYVLRVGGLVYTITDV---LELHDWMCTHFEEHP 185 (235)
T ss_dssp CEEEEEEESCC-------------------------CCCHHHHHHHHHHEEEEEEEEEEESC---HHHHHHHHHHHHTST
T ss_pred CeeEEEEeCCCc------------hhhhhhhhhh--hhhHHHHHHHHHHCCCCCEEEEEeCC---HHHHHHHHHHHHHCC
Confidence 899999865431 1000000000 01345799999999999999988764 222233445567788
Q ss_pred CceEec
Q 009708 486 EFSIDP 491 (528)
Q Consensus 486 ~~~~~~ 491 (528)
.|+...
T Consensus 186 ~f~~~~ 191 (235)
T 3ckk_A 186 LFERVP 191 (235)
T ss_dssp TEEEEC
T ss_pred CccccC
Confidence 777653
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.33 E-value=6.3e-12 Score=123.31 Aligned_cols=130 Identities=11% Similarity=0.137 Sum_probs=95.4
Q ss_pred cccccceeEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccE
Q 009708 310 GLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVI 389 (528)
Q Consensus 310 ~~~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i 389 (528)
..|.......|......+...+.+.++.+|||+|||+|..+..+++. ..+|+++|+|+.+++.++++++..|+++ +
T Consensus 12 ~~~~~s~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~-v 87 (260)
T 1vl5_A 12 HMYVTSQIHAKGSDLAKLMQIAALKGNEEVLDVATGGGHVANAFAPF---VKKVVAFDLTEDILKVARAFIEGNGHQQ-V 87 (260)
T ss_dssp -----------CCCHHHHHHHHTCCSCCEEEEETCTTCHHHHHHGGG---SSEEEEEESCHHHHHHHHHHHHHTTCCS-E
T ss_pred eeeecCccccCHHHHHHHHHHhCCCCCCEEEEEeCCCCHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHhcCCCc-e
Confidence 44556666677777777788888888999999999999999999876 2599999999999999999999999875 8
Q ss_pred EEEcCccccccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcC
Q 009708 390 RTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466 (528)
Q Consensus 390 ~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTc 466 (528)
+++++|+..++. ..++||+|++.... ..-+ + ...+|.++.++|||||+|++++.
T Consensus 88 ~~~~~d~~~l~~-~~~~fD~V~~~~~l------~~~~------d----------~~~~l~~~~r~LkpgG~l~~~~~ 141 (260)
T 1vl5_A 88 EYVQGDAEQMPF-TDERFHIVTCRIAA------HHFP------N----------PASFVSEAYRVLKKGGQLLLVDN 141 (260)
T ss_dssp EEEECCC-CCCS-CTTCEEEEEEESCG------GGCS------C----------HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEEecHHhCCC-CCCCEEEEEEhhhh------HhcC------C----------HHHHHHHHHHHcCCCCEEEEEEc
Confidence 999999987652 24689999975322 1111 1 12469999999999999998643
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.33 E-value=3.8e-12 Score=122.26 Aligned_cols=111 Identities=19% Similarity=0.243 Sum_probs=89.5
Q ss_pred HHHHHhc--CCCCCCeEEEeCCccchHHHHHHHHcC----CCcEEEEEcCChHHHHHHHHHHHHcC-----CCccEEEEc
Q 009708 325 GLVVAVV--DPQPGQSIVDCCAAPGGKTLYMASCLS----GQGLVYAIDINKGRLRILNETAKLHQ-----VNSVIRTIH 393 (528)
Q Consensus 325 ~l~~~~l--~~~~g~~VLDl~aG~G~kt~~la~~~~----~~~~v~avD~s~~~l~~~~~n~~~~g-----~~~~i~~~~ 393 (528)
..+...+ .+.++.+|||+|||+|..+..+++... +.++|+++|+++.+++.++++++..+ .. ++++++
T Consensus 68 ~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~-~v~~~~ 146 (227)
T 2pbf_A 68 ALSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKID-NFKIIH 146 (227)
T ss_dssp HHHHHHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSST-TEEEEE
T ss_pred HHHHHHHHhhCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccC-CEEEEE
Confidence 3444555 477899999999999999999999864 45799999999999999999999988 44 489999
Q ss_pred Ccccccc----ccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 394 ADLRTFA----DNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 394 ~D~~~~~----~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
+|+.... .. ..+||+|+++.++.. +++.+.++|||||+|+++.
T Consensus 147 ~d~~~~~~~~~~~-~~~fD~I~~~~~~~~----------------------------~~~~~~~~LkpgG~lv~~~ 193 (227)
T 2pbf_A 147 KNIYQVNEEEKKE-LGLFDAIHVGASASE----------------------------LPEILVDLLAENGKLIIPI 193 (227)
T ss_dssp CCGGGCCHHHHHH-HCCEEEEEECSBBSS----------------------------CCHHHHHHEEEEEEEEEEE
T ss_pred CChHhcccccCcc-CCCcCEEEECCchHH----------------------------HHHHHHHhcCCCcEEEEEE
Confidence 9998743 21 367999999887731 2566788999999998654
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=4e-12 Score=123.18 Aligned_cols=124 Identities=15% Similarity=0.218 Sum_probs=97.6
Q ss_pred cccceeEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEE
Q 009708 312 LKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRT 391 (528)
Q Consensus 312 ~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~ 391 (528)
+..|....+......+...+.+.++.+|||+|||+|..+..+++..+ ++|+++|+++.+++.++++++..|+.+ +++
T Consensus 68 ~~~~~~~~~~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~-v~~ 144 (235)
T 1jg1_A 68 IPAGQTVSAPHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLERAGVKN-VHV 144 (235)
T ss_dssp CSTTCEECCHHHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHTTCCS-EEE
T ss_pred cCCCceeccHHHHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCC-cEE
Confidence 34566666666666777778888999999999999999999998753 789999999999999999999999987 899
Q ss_pred EcCccccccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 392 IHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 392 ~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
+.+|+..... ...+||+|+++.+... +.+.+.+.|||||+|++++-.
T Consensus 145 ~~~d~~~~~~-~~~~fD~Ii~~~~~~~----------------------------~~~~~~~~L~pgG~lvi~~~~ 191 (235)
T 1jg1_A 145 ILGDGSKGFP-PKAPYDVIIVTAGAPK----------------------------IPEPLIEQLKIGGKLIIPVGS 191 (235)
T ss_dssp EESCGGGCCG-GGCCEEEEEECSBBSS----------------------------CCHHHHHTEEEEEEEEEEECS
T ss_pred EECCcccCCC-CCCCccEEEECCcHHH----------------------------HHHHHHHhcCCCcEEEEEEec
Confidence 9999732221 1245999998766521 123567889999999987643
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=1.1e-11 Score=115.81 Aligned_cols=115 Identities=18% Similarity=0.177 Sum_probs=91.1
Q ss_pred HHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCC
Q 009708 325 GLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 404 (528)
Q Consensus 325 ~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~ 404 (528)
..+...+...++.+|||+|||+|..+..+++. +.+|+++|+|+.+++.++++++..++++ ++++++|+..+.. .
T Consensus 22 ~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~-~~~~~~d~~~~~~--~ 95 (199)
T 2xvm_A 22 SEVLEAVKVVKPGKTLDLGCGNGRNSLYLAAN---GYDVDAWDKNAMSIANVERIKSIENLDN-LHTRVVDLNNLTF--D 95 (199)
T ss_dssp HHHHHHTTTSCSCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHTCTT-EEEEECCGGGCCC--C
T ss_pred HHHHHHhhccCCCeEEEEcCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHhCCCCC-cEEEEcchhhCCC--C
Confidence 34555666667889999999999999999986 4699999999999999999999998865 8999999988654 4
Q ss_pred CCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 405 ~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
++||+|++..... .. ...+. ..+++.+.++|||||++++.+
T Consensus 96 ~~~D~v~~~~~l~------~~-------~~~~~-------~~~l~~~~~~L~~gG~l~~~~ 136 (199)
T 2xvm_A 96 RQYDFILSTVVLM------FL-------EAKTI-------PGLIANMQRCTKPGGYNLIVA 136 (199)
T ss_dssp CCEEEEEEESCGG------GS-------CGGGH-------HHHHHHHHHTEEEEEEEEEEE
T ss_pred CCceEEEEcchhh------hC-------CHHHH-------HHHHHHHHHhcCCCeEEEEEE
Confidence 7899999764331 11 11222 346999999999999987654
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.32 E-value=3.5e-12 Score=130.99 Aligned_cols=128 Identities=15% Similarity=0.173 Sum_probs=101.8
Q ss_pred cchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccc
Q 009708 321 DESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400 (528)
Q Consensus 321 d~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~ 400 (528)
|..+.++...+.+.++.+|||+|||+|..+..+++. .+..+|+++|+|+.+++.++++++.+++. ++++.+|+....
T Consensus 182 d~~~~~ll~~l~~~~~~~VLDlGcG~G~~~~~la~~-~~~~~v~~vD~s~~~l~~a~~~~~~~~~~--~~~~~~d~~~~~ 258 (343)
T 2pjd_A 182 DVGSQLLLSTLTPHTKGKVLDVGCGAGVLSVAFARH-SPKIRLTLCDVSAPAVEASRATLAANGVE--GEVFASNVFSEV 258 (343)
T ss_dssp CHHHHHHHHHSCTTCCSBCCBTTCTTSHHHHHHHHH-CTTCBCEEEESBHHHHHHHHHHHHHTTCC--CEEEECSTTTTC
T ss_pred cHHHHHHHHhcCcCCCCeEEEecCccCHHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHhCCC--CEEEEccccccc
Confidence 445777777777667789999999999999999987 34569999999999999999999999886 467888987654
Q ss_pred ccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCch
Q 009708 401 DNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPE 471 (528)
Q Consensus 401 ~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~ 471 (528)
.++||+|++++|.. .|. .........+++.+.++|||||.+++.+....+.
T Consensus 259 ---~~~fD~Iv~~~~~~-~g~----------------~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~ 309 (343)
T 2pjd_A 259 ---KGRFDMIISNPPFH-DGM----------------QTSLDAAQTLIRGAVRHLNSGGELRIVANAFLPY 309 (343)
T ss_dssp ---CSCEEEEEECCCCC-SSS----------------HHHHHHHHHHHHHHGGGEEEEEEEEEEEETTSSH
T ss_pred ---cCCeeEEEECCCcc-cCc----------------cCCHHHHHHHHHHHHHhCCCCcEEEEEEcCCCCc
Confidence 36899999999973 111 0011234567999999999999999988876654
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.32 E-value=4.6e-12 Score=121.82 Aligned_cols=106 Identities=21% Similarity=0.263 Sum_probs=85.8
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccc--cCCCCCCEE
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD--NSTVKCDKV 410 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~--~~~~~fD~V 410 (528)
+.++++|||+|||+|..+..+++.+++.++|+++|+++.+++.++++++.. + +++++++|+..... ....+||+|
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~--~-~v~~~~~d~~~~~~~~~~~~~~D~v 147 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER--R-NIVPILGDATKPEEYRALVPKVDVI 147 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC--T-TEEEEECCTTCGGGGTTTCCCEEEE
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc--C-CCEEEEccCCCcchhhcccCCceEE
Confidence 678899999999999999999988765689999999999999999998765 3 48999999987431 123579999
Q ss_pred EEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 411 LLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 411 l~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
++|+|. ++ ....++.++.++|||||+++++.
T Consensus 148 ~~~~~~---------~~---------------~~~~~l~~~~~~LkpgG~l~~~~ 178 (227)
T 1g8a_A 148 FEDVAQ---------PT---------------QAKILIDNAEVYLKRGGYGMIAV 178 (227)
T ss_dssp EECCCS---------TT---------------HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EECCCC---------Hh---------------HHHHHHHHHHHhcCCCCEEEEEE
Confidence 999872 10 11234888999999999999863
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=1.9e-12 Score=129.37 Aligned_cols=128 Identities=12% Similarity=0.112 Sum_probs=93.1
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHc--CC--------CccEEEEcCccccccccC
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLH--QV--------NSVIRTIHADLRTFADNS 403 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~--g~--------~~~i~~~~~D~~~~~~~~ 403 (528)
..+.+|||+|||+|+.+..+++. +..+|+++|+++.+++.+++++ .. ++ ..+++++++|+..+...
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~--~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~- 149 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQH--DVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN- 149 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTS--CCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-
T ss_pred CCCCeEEEEcCCcCHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcc-
Confidence 34679999999999999999886 4679999999999999999998 44 33 34699999999876543
Q ss_pred CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCC-chhhHHHHHHHHh
Q 009708 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSID-PEENEERVEAFLL 482 (528)
Q Consensus 404 ~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~-~~Ene~~v~~~l~ 482 (528)
.++||+|++|+|+. .|. + ..+ .+.++++.+.++|+|||++++.+++.. ..+.-..+...+.
T Consensus 150 ~~~fD~Ii~d~~~~-~~~----~--------~~l-----~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~ 211 (281)
T 1mjf_A 150 NRGFDVIIADSTDP-VGP----A--------KVL-----FSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMK 211 (281)
T ss_dssp CCCEEEEEEECCCC-C-----------------T-----TSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHHH
T ss_pred cCCeeEEEECCCCC-CCc----c--------hhh-----hHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHH
Confidence 47899999999862 111 0 000 124578899999999999998876643 2233333444454
Q ss_pred h
Q 009708 483 R 483 (528)
Q Consensus 483 ~ 483 (528)
+
T Consensus 212 ~ 212 (281)
T 1mjf_A 212 K 212 (281)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.31 E-value=2e-11 Score=127.11 Aligned_cols=139 Identities=17% Similarity=0.157 Sum_probs=99.0
Q ss_pred cccccceeEeecc------hHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCC------------------------
Q 009708 310 GLLKEGLCAVQDE------SAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSG------------------------ 359 (528)
Q Consensus 310 ~~~~~G~~~~Qd~------~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~------------------------ 359 (528)
.+++.|+-..|.. -+..++.+....++..|||.|||+|++.+.+|....+
T Consensus 163 ~LhkRgyr~~~~~Apl~e~LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~ 242 (384)
T 3ldg_A 163 SLFKRGYRTEKGGAPIKENMAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTR 242 (384)
T ss_dssp CTTCCSCCCC---CCCCHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHH
T ss_pred cccccCcccCCCCCCCcHHHHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHH
Confidence 4456666544422 2344455667788999999999999999998876432
Q ss_pred -------------CcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcCCCCCCccccCCc
Q 009708 360 -------------QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRA 426 (528)
Q Consensus 360 -------------~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~p 426 (528)
..+|+|+|+|+.+++.+++|++.+|+.+.++++++|+.++... ..||+|++|||+.- .+
T Consensus 243 ~~~~a~~~~~~~~~~~v~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~--~~fD~Iv~NPPYG~-rl----- 314 (384)
T 3ldg_A 243 VRNEADEQADYDIQLDISGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTN--KINGVLISNPPYGE-RL----- 314 (384)
T ss_dssp HHHHHHHHCCTTCCCCEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCC--CCSCEEEECCCCTT-TT-----
T ss_pred HHHHHHHhhhccCCceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCcc--CCcCEEEECCchhh-cc-----
Confidence 1469999999999999999999999988899999999987643 58999999999931 11
Q ss_pred hhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcC
Q 009708 427 DLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466 (528)
Q Consensus 427 d~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTc 466 (528)
.+...+..++..+.+... . -+||.+++.|-
T Consensus 315 --------~~~~~l~~ly~~lg~~lk-~-~~g~~~~iit~ 344 (384)
T 3ldg_A 315 --------LDDKAVDILYNEMGETFA-P-LKTWSQFILTN 344 (384)
T ss_dssp --------SCHHHHHHHHHHHHHHHT-T-CTTSEEEEEES
T ss_pred --------CCHHHHHHHHHHHHHHHh-h-CCCcEEEEEEC
Confidence 111233344555444433 3 46998887654
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.9e-12 Score=125.96 Aligned_cols=112 Identities=17% Similarity=0.160 Sum_probs=87.0
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC-CCCCCEEE
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS-TVKCDKVL 411 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~-~~~fD~Vl 411 (528)
..+|.+|||+|||+|..+.++++. ...+|++||+|+.+++.++++++..+.. +.++.+|+....... .++||.|+
T Consensus 58 ~~~G~rVLdiG~G~G~~~~~~~~~--~~~~v~~id~~~~~~~~a~~~~~~~~~~--~~~~~~~a~~~~~~~~~~~FD~i~ 133 (236)
T 3orh_A 58 SSKGGRVLEVGFGMAIAASKVQEA--PIDEHWIIECNDGVFQRLRDWAPRQTHK--VIPLKGLWEDVAPTLPDGHFDGIL 133 (236)
T ss_dssp TTTCEEEEEECCTTSHHHHHHTTS--CEEEEEEEECCHHHHHHHHHHGGGCSSE--EEEEESCHHHHGGGSCTTCEEEEE
T ss_pred ccCCCeEEEECCCccHHHHHHHHh--CCcEEEEEeCCHHHHHHHHHHHhhCCCc--eEEEeehHHhhcccccccCCceEE
Confidence 357889999999999999999875 2358999999999999999999887753 788899987754332 56899999
Q ss_pred EcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 412 LDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 412 ~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
.|+..+..... +. .....+++++.++|||||+|+|.+
T Consensus 134 ~D~~~~~~~~~-~~----------------~~~~~~~~e~~rvLkPGG~l~f~~ 170 (236)
T 3orh_A 134 YDTYPLSEETW-HT----------------HQFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp ECCCCCBGGGT-TT----------------HHHHHHHHTHHHHEEEEEEEEECC
T ss_pred Eeeeecccchh-hh----------------cchhhhhhhhhheeCCCCEEEEEe
Confidence 99876433221 11 123456899999999999999854
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.9e-12 Score=130.52 Aligned_cols=131 Identities=13% Similarity=0.080 Sum_probs=95.0
Q ss_pred eEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcc
Q 009708 317 CAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL 396 (528)
Q Consensus 317 ~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~ 396 (528)
|.+++.....++..+.+.++++|||+|||+|..|..+++. .++|+|+|+++.+++.++++++..++++ ++++++|+
T Consensus 24 fl~~~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~---~~~v~~vDi~~~~~~~a~~~~~~~~~~~-v~~~~~D~ 99 (299)
T 2h1r_A 24 LLKNPGILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPL---AKKVITIDIDSRMISEVKKRCLYEGYNN-LEVYEGDA 99 (299)
T ss_dssp EECCHHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTT---SSEEEEECSCHHHHHHHHHHHHHTTCCC-EEC----C
T ss_pred eecCHHHHHHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHHcCCCc-eEEEECch
Confidence 4455666777778888889999999999999999999875 4699999999999999999999888864 89999999
Q ss_pred ccccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHH--------HHHHhccCcCCCEEEEEcCCC
Q 009708 397 RTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDEL--------LDAASLLVKPGGVLVYSTCSI 468 (528)
Q Consensus 397 ~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~l--------L~~a~~~LkpGG~LvysTcs~ 468 (528)
..+.. .+||.|++|+|+.... ..+..+.+.+..+ .+.+.++++++|...|+|||.
T Consensus 100 ~~~~~---~~~D~Vv~n~py~~~~--------------~~~~~ll~~~~~~~~~~l~~Q~e~a~rlla~~G~~~y~~ls~ 162 (299)
T 2h1r_A 100 IKTVF---PKFDVCTANIPYKISS--------------PLIFKLISHRPLFKCAVLMFQKEFAERMLANVGDSNYSRLTI 162 (299)
T ss_dssp CSSCC---CCCSEEEEECCGGGHH--------------HHHHHHHHCSSCCSEEEEEEEHHHHHHHTCCTTSTTCCHHHH
T ss_pred hhCCc---ccCCEEEEcCCccccc--------------HHHHHHHhcCCccceeeehHHHHHHHHHhcCCCCcchhHHHH
Confidence 87653 4799999999985311 1111111100000 145778899999888887764
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.2e-11 Score=121.86 Aligned_cols=119 Identities=17% Similarity=0.232 Sum_probs=95.5
Q ss_pred HHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC
Q 009708 324 AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS 403 (528)
Q Consensus 324 s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~ 403 (528)
...+...+.+.++.+|||+|||+|..+..+++.. +.+|+++|+|+.+++.+++++...|+.++++++++|+..++. .
T Consensus 50 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~ 126 (273)
T 3bus_A 50 TDEMIALLDVRSGDRVLDVGCGIGKPAVRLATAR--DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPF-E 126 (273)
T ss_dssp HHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHS--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCS-C
T ss_pred HHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCC-C
Confidence 3445566777889999999999999999999864 479999999999999999999999988779999999987642 2
Q ss_pred CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 404 ~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
.++||+|++.... ..-++ ...+|+.+.++|||||++++++..
T Consensus 127 ~~~fD~v~~~~~l------~~~~~----------------~~~~l~~~~~~L~pgG~l~i~~~~ 168 (273)
T 3bus_A 127 DASFDAVWALESL------HHMPD----------------RGRALREMARVLRPGGTVAIADFV 168 (273)
T ss_dssp TTCEEEEEEESCT------TTSSC----------------HHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred CCCccEEEEechh------hhCCC----------------HHHHHHHHHHHcCCCeEEEEEEee
Confidence 4689999974332 22111 134699999999999999988754
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=8.5e-12 Score=120.58 Aligned_cols=107 Identities=23% Similarity=0.271 Sum_probs=86.1
Q ss_pred cCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccc--ccCCCCCC
Q 009708 331 VDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA--DNSTVKCD 408 (528)
Q Consensus 331 l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~--~~~~~~fD 408 (528)
+.+.++.+|||+|||+|..+..+++..++.++|+|+|+++.+++.+.++++.. . +++++++|+.... +...++||
T Consensus 73 ~~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~--~-~v~~~~~d~~~~~~~~~~~~~~D 149 (233)
T 2ipx_A 73 IHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR--T-NIIPVIEDARHPHKYRMLIAMVD 149 (233)
T ss_dssp CCCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC--T-TEEEECSCTTCGGGGGGGCCCEE
T ss_pred ecCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc--C-CeEEEEcccCChhhhcccCCcEE
Confidence 44678999999999999999999998755689999999999999998888876 3 4899999998743 12246899
Q ss_pred EEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 409 KVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 409 ~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
+|++|+|. ++ ....++.++.++|||||+++++
T Consensus 150 ~V~~~~~~---------~~---------------~~~~~~~~~~~~LkpgG~l~i~ 181 (233)
T 2ipx_A 150 VIFADVAQ---------PD---------------QTRIVALNAHTFLRNGGHFVIS 181 (233)
T ss_dssp EEEECCCC---------TT---------------HHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEcCCC---------cc---------------HHHHHHHHHHHHcCCCeEEEEE
Confidence 99999872 11 1133578899999999999974
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.2e-11 Score=128.20 Aligned_cols=117 Identities=14% Similarity=0.112 Sum_probs=89.4
Q ss_pred HHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHH-------HHcCCC-ccEEEEcCccc
Q 009708 326 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETA-------KLHQVN-SVIRTIHADLR 397 (528)
Q Consensus 326 l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~-------~~~g~~-~~i~~~~~D~~ 397 (528)
.+...+.+.+|++|||+|||+|..++.+|... +..+|+|||+++.+++.+++++ +.+|+. .+|+++++|+.
T Consensus 164 ~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~-g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~ 242 (438)
T 3uwp_A 164 QMIDEIKMTDDDLFVDLGSGVGQVVLQVAAAT-NCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFL 242 (438)
T ss_dssp HHHHHHCCCTTCEEEEESCTTSHHHHHHHHHC-CCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTT
T ss_pred HHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECccc
Confidence 34556788999999999999999999999864 3457999999999999998865 445763 46999999998
Q ss_pred cccccC-CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcC
Q 009708 398 TFADNS-TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466 (528)
Q Consensus 398 ~~~~~~-~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTc 466 (528)
+++... ...||+|++++++.. | +. ...|.+.++.|||||+||.+..
T Consensus 243 ~lp~~d~~~~aDVVf~Nn~~F~-------p---------dl-------~~aL~Ei~RvLKPGGrIVssE~ 289 (438)
T 3uwp_A 243 SEEWRERIANTSVIFVNNFAFG-------P---------EV-------DHQLKERFANMKEGGRIVSSKP 289 (438)
T ss_dssp SHHHHHHHHTCSEEEECCTTCC-------H---------HH-------HHHHHHHHTTSCTTCEEEESSC
T ss_pred CCccccccCCccEEEEcccccC-------c---------hH-------HHHHHHHHHcCCCCcEEEEeec
Confidence 865321 136999999988721 1 22 1236677899999999996543
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=1.6e-11 Score=124.26 Aligned_cols=119 Identities=13% Similarity=0.148 Sum_probs=95.1
Q ss_pred HHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCC
Q 009708 326 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 405 (528)
Q Consensus 326 l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~ 405 (528)
.+...+.+.++.+|||+|||+|..+..+++.. +.+|+++|+|+.+++.+++++...|+.++++++++|+.+++ +
T Consensus 81 ~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~ 154 (318)
T 2fk8_A 81 LNLDKLDLKPGMTLLDIGCGWGTTMRRAVERF--DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA----E 154 (318)
T ss_dssp HHHTTSCCCTTCEEEEESCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC----C
T ss_pred HHHHhcCCCCcCEEEEEcccchHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC----C
Confidence 44555677889999999999999999999875 35999999999999999999999998777999999997763 6
Q ss_pred CCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCc
Q 009708 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDP 470 (528)
Q Consensus 406 ~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~ 470 (528)
+||+|++.... ..-+ ..+ ...+++.+.++|||||++++.+.....
T Consensus 155 ~fD~v~~~~~l------~~~~-------~~~-------~~~~l~~~~~~LkpgG~l~~~~~~~~~ 199 (318)
T 2fk8_A 155 PVDRIVSIEAF------EHFG-------HEN-------YDDFFKRCFNIMPADGRMTVQSSVSYH 199 (318)
T ss_dssp CCSEEEEESCG------GGTC-------GGG-------HHHHHHHHHHHSCTTCEEEEEEEECCC
T ss_pred CcCEEEEeChH------HhcC-------HHH-------HHHHHHHHHHhcCCCcEEEEEEeccCC
Confidence 79999975322 1111 011 244699999999999999988876544
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=99.30 E-value=3.3e-12 Score=138.95 Aligned_cols=162 Identities=12% Similarity=0.100 Sum_probs=115.4
Q ss_pred cceeEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCC-----------------cEEEEEcCChHHHHHH
Q 009708 314 EGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQ-----------------GLVYAIDINKGRLRIL 376 (528)
Q Consensus 314 ~G~~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~-----------------~~v~avD~s~~~l~~~ 376 (528)
.|.|+..+..+.+++.++.+.++.+|||.|||+|++.+.++..+... ..++|+|+++.++..+
T Consensus 148 ~G~fyTP~~iv~~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA 227 (541)
T 2ar0_A 148 AGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLA 227 (541)
T ss_dssp --CCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHH
T ss_pred CCeeeCCHHHHHHHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHH
Confidence 57788878888888999999999999999999999999998875321 3799999999999999
Q ss_pred HHHHHHcCCCc----cEEEEcCccccccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHh
Q 009708 377 NETAKLHQVNS----VIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAAS 452 (528)
Q Consensus 377 ~~n~~~~g~~~----~i~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~ 452 (528)
+.|+...|+.+ .+.++++|..........+||+|++|||+++........+.....+ ..+..++.+++
T Consensus 228 ~~nl~l~gi~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~--------~~~~~Fl~~~l 299 (541)
T 2ar0_A 228 LMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTS--------NKQLCFMQHII 299 (541)
T ss_dssp HHHHHTTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCS--------CHHHHHHHHHH
T ss_pred HHHHHHhCCCccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCC--------chHHHHHHHHH
Confidence 99999998874 2567899987654323367999999999976543221111111001 12335799999
Q ss_pred ccCcCCCEEEEEcCC--CCchhhHHHHHHHHhh
Q 009708 453 LLVKPGGVLVYSTCS--IDPEENEERVEAFLLR 483 (528)
Q Consensus 453 ~~LkpGG~LvysTcs--~~~~Ene~~v~~~l~~ 483 (528)
++|||||++++.+.. +........+..+|.+
T Consensus 300 ~~Lk~gGr~a~V~p~~~L~~~~~~~~iR~~L~~ 332 (541)
T 2ar0_A 300 ETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMD 332 (541)
T ss_dssp HHEEEEEEEEEEEEHHHHHCCTHHHHHHHHHHH
T ss_pred HHhCCCCEEEEEecCcceecCcHHHHHHHHHhh
Confidence 999999998877543 2222223445555544
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=5.5e-12 Score=132.59 Aligned_cols=155 Identities=21% Similarity=0.217 Sum_probs=107.2
Q ss_pred cceeEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEc
Q 009708 314 EGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH 393 (528)
Q Consensus 314 ~G~~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~ 393 (528)
.|.|+..+..+..++..+...++.+|||+|||+|++++.+++.+....+|+|+|+++.+++.+ .++++++
T Consensus 18 ~g~~~TP~~l~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a----------~~~~~~~ 87 (421)
T 2ih2_A 18 LGRVETPPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP----------PWAEGIL 87 (421)
T ss_dssp ---CCCCHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC----------TTEEEEE
T ss_pred CceEeCCHHHHHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC----------CCCcEEe
Confidence 567777777778888888766677999999999999999998764467999999999998766 2488999
Q ss_pred CccccccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHH----------HHHHHHHHHHHhccCcCCCEEEE
Q 009708 394 ADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEEL----------KILQDELLDAASLLVKPGGVLVY 463 (528)
Q Consensus 394 ~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l----------~~~q~~lL~~a~~~LkpGG~Lvy 463 (528)
+|+..... .++||+|++|||+...+...+.. ..........+ ...+..++..+.++|+|||++++
T Consensus 88 ~D~~~~~~--~~~fD~Ii~NPPy~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~ 162 (421)
T 2ih2_A 88 ADFLLWEP--GEAFDLILGNPPYGIVGEASKYP---IHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVF 162 (421)
T ss_dssp SCGGGCCC--SSCEEEEEECCCCCCBSCTTTCS---BCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEE
T ss_pred CChhhcCc--cCCCCEEEECcCccCcccccccc---cccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEE
Confidence 99987653 36899999999997654421100 00001111111 12456789999999999999998
Q ss_pred EcCCC--CchhhHHHHHHHHhhC
Q 009708 464 STCSI--DPEENEERVEAFLLRH 484 (528)
Q Consensus 464 sTcs~--~~~Ene~~v~~~l~~~ 484 (528)
.++.- .....+ .+..++.++
T Consensus 163 i~p~~~l~~~~~~-~lr~~l~~~ 184 (421)
T 2ih2_A 163 VVPATWLVLEDFA-LLREFLARE 184 (421)
T ss_dssp EEEGGGGTCGGGH-HHHHHHHHH
T ss_pred EEChHHhcCccHH-HHHHHHHhc
Confidence 87652 222333 445555443
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.30 E-value=1.7e-11 Score=116.89 Aligned_cols=120 Identities=14% Similarity=0.088 Sum_probs=90.4
Q ss_pred HHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCc----cEEEEcCcccccc
Q 009708 325 GLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS----VIRTIHADLRTFA 400 (528)
Q Consensus 325 ~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~----~i~~~~~D~~~~~ 400 (528)
..+...+...++.+|||+|||+|..+..+++. .+..+|+|+|+|+.+++.++++++..++.. +++++++|+....
T Consensus 19 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 97 (217)
T 3jwh_A 19 NGVVAALKQSNARRVIDLGCGQGNLLKILLKD-SFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQD 97 (217)
T ss_dssp HHHHHHHHHTTCCEEEEETCTTCHHHHHHHHC-TTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCC
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCHHHHHHHhh-CCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCccccc
Confidence 34445555567889999999999999999985 334699999999999999999999888764 5999999986543
Q ss_pred ccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcC
Q 009708 401 DNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466 (528)
Q Consensus 401 ~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTc 466 (528)
. ..++||+|++.... .. ....+ ...+++.+.++|||||.++...+
T Consensus 98 ~-~~~~fD~v~~~~~l------~~-------~~~~~-------~~~~l~~~~~~LkpgG~li~~~~ 142 (217)
T 3jwh_A 98 K-RFHGYDAATVIEVI------EH-------LDLSR-------LGAFERVLFEFAQPKIVIVTTPN 142 (217)
T ss_dssp G-GGCSCSEEEEESCG------GG-------CCHHH-------HHHHHHHHHTTTCCSEEEEEEEB
T ss_pred c-cCCCcCEEeeHHHH------Hc-------CCHHH-------HHHHHHHHHHHcCCCEEEEEccC
Confidence 2 23689999974322 11 11122 24569999999999998876655
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=99.29 E-value=3.6e-11 Score=125.45 Aligned_cols=139 Identities=22% Similarity=0.217 Sum_probs=101.1
Q ss_pred cccccceeEeecch------HHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCC------------------------
Q 009708 310 GLLKEGLCAVQDES------AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSG------------------------ 359 (528)
Q Consensus 310 ~~~~~G~~~~Qd~~------s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~------------------------ 359 (528)
.+++.|+...|..+ +..++.+....++..|||+|||+|++++.+|....+
T Consensus 164 ~l~krgyr~~~~~Apl~e~lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~ 243 (385)
T 3ldu_A 164 ALHKRGYREKANKAPIRETLAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWD 243 (385)
T ss_dssp CTTCCSCCCC--CCCCCHHHHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHH
T ss_pred hhhhcccccCCCCCCCcHHHHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHH
Confidence 45667776555322 334455667788899999999999999999876422
Q ss_pred -------------CcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcCCCCCCccccCCc
Q 009708 360 -------------QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRA 426 (528)
Q Consensus 360 -------------~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~p 426 (528)
..+|+|+|+++.+++.+++|++.+|+.+.+++.++|+.++.. +.+||+|++|||+.-
T Consensus 244 ~~~~a~~~~~~~~~~~V~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~--~~~~D~Iv~NPPyg~-------- 313 (385)
T 3ldu_A 244 VRKDAFNKIDNESKFKIYGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKS--EDEFGFIITNPPYGE-------- 313 (385)
T ss_dssp HHHHHHHHSCCSCCCCEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCC--SCBSCEEEECCCCCC--------
T ss_pred HHHHHHHHhhccCCceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCc--CCCCcEEEECCCCcC--------
Confidence 157999999999999999999999998779999999998764 357999999999831
Q ss_pred hhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcC
Q 009708 427 DLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466 (528)
Q Consensus 427 d~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTc 466 (528)
...+...+..++..+-+.... -+||.+++.|.
T Consensus 314 ------rl~~~~~l~~ly~~lg~~lk~--~~g~~~~iit~ 345 (385)
T 3ldu_A 314 ------RLEDKDSVKQLYKELGYAFRK--LKNWSYYLITS 345 (385)
T ss_dssp ------SHHHHHHHHHHHHHHHHHHHT--SBSCEEEEEES
T ss_pred ------ccCCHHHHHHHHHHHHHHHhh--CCCCEEEEEEC
Confidence 112334455555554444333 45888877664
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.29 E-value=4.9e-12 Score=121.77 Aligned_cols=122 Identities=12% Similarity=0.151 Sum_probs=93.3
Q ss_pred ceeEeecchHHHHHHhc--CCCCCCeEEEeCCccchHHHHHHHHcCC-----CcEEEEEcCChHHHHHHHHHHHHcC---
Q 009708 315 GLCAVQDESAGLVVAVV--DPQPGQSIVDCCAAPGGKTLYMASCLSG-----QGLVYAIDINKGRLRILNETAKLHQ--- 384 (528)
Q Consensus 315 G~~~~Qd~~s~l~~~~l--~~~~g~~VLDl~aG~G~kt~~la~~~~~-----~~~v~avD~s~~~l~~~~~n~~~~g--- 384 (528)
|..+.|......+...+ .+.++.+|||+|||+|..+..+++.++. .++|+++|+++.+++.++++++..+
T Consensus 62 ~~~~~~p~~~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~ 141 (227)
T 1r18_A 62 GVTISAPHMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSM 141 (227)
T ss_dssp TEEECCHHHHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred CCccCChHHHHHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccc
Confidence 33333444445555666 4778999999999999999999987542 3699999999999999999998876
Q ss_pred --CCccEEEEcCccccccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEE
Q 009708 385 --VNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV 462 (528)
Q Consensus 385 --~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lv 462 (528)
..+ ++++++|+...... ..+||+|+++.++.. +++.+.++|||||+|+
T Consensus 142 ~~~~~-v~~~~~d~~~~~~~-~~~fD~I~~~~~~~~----------------------------~~~~~~~~LkpgG~lv 191 (227)
T 1r18_A 142 LDSGQ-LLIVEGDGRKGYPP-NAPYNAIHVGAAAPD----------------------------TPTELINQLASGGRLI 191 (227)
T ss_dssp HHHTS-EEEEESCGGGCCGG-GCSEEEEEECSCBSS----------------------------CCHHHHHTEEEEEEEE
T ss_pred cCCCc-eEEEECCcccCCCc-CCCccEEEECCchHH----------------------------HHHHHHHHhcCCCEEE
Confidence 454 89999999873221 257999999887621 2356788999999999
Q ss_pred EEcC
Q 009708 463 YSTC 466 (528)
Q Consensus 463 ysTc 466 (528)
+++.
T Consensus 192 i~~~ 195 (227)
T 1r18_A 192 VPVG 195 (227)
T ss_dssp EEES
T ss_pred EEEe
Confidence 7654
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.29 E-value=8.5e-12 Score=120.04 Aligned_cols=120 Identities=18% Similarity=0.175 Sum_probs=94.7
Q ss_pred cceeEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEc
Q 009708 314 EGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH 393 (528)
Q Consensus 314 ~G~~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~ 393 (528)
.|....+......+...+.+.++.+|||+|||+|..+..++... .+|+++|+++.+++.+++++...+ ++++++
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~---~v~~~~ 122 (231)
T 1vbf_A 49 PGINTTALNLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSYYN---NIKLIL 122 (231)
T ss_dssp TTEEECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTCS---SEEEEE
T ss_pred CCCccCCHHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHHc---CEEEEEeCCHHHHHHHHHHHhhcC---CeEEEE
Confidence 44555555556667777788889999999999999999999872 799999999999999999998877 489999
Q ss_pred CccccccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCC
Q 009708 394 ADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 468 (528)
Q Consensus 394 ~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~ 468 (528)
+|+..... ..++||+|+++.++.. +.+.+.++|||||++++++.+-
T Consensus 123 ~d~~~~~~-~~~~fD~v~~~~~~~~----------------------------~~~~~~~~L~pgG~l~~~~~~~ 168 (231)
T 1vbf_A 123 GDGTLGYE-EEKPYDRVVVWATAPT----------------------------LLCKPYEQLKEGGIMILPIGVG 168 (231)
T ss_dssp SCGGGCCG-GGCCEEEEEESSBBSS----------------------------CCHHHHHTEEEEEEEEEEECSS
T ss_pred CCcccccc-cCCCccEEEECCcHHH----------------------------HHHHHHHHcCCCcEEEEEEcCC
Confidence 99987322 2367999999866521 1234678999999999887653
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=1.3e-11 Score=130.76 Aligned_cols=88 Identities=23% Similarity=0.292 Sum_probs=75.2
Q ss_pred HHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---C
Q 009708 327 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---S 403 (528)
Q Consensus 327 ~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---~ 403 (528)
+...+.+.++++|||+|||+|.+++.++.. ..+|+|+|+|+.+++.+++|++.+|+++ ++++++|+.+.... .
T Consensus 278 ~~~~l~~~~~~~VLDlgcG~G~~~~~la~~---~~~V~gvD~s~~al~~A~~n~~~~~~~~-v~f~~~d~~~~l~~~~~~ 353 (433)
T 1uwv_A 278 ALEWLDVQPEDRVLDLFCGMGNFTLPLATQ---AASVVGVEGVPALVEKGQQNARLNGLQN-VTFYHENLEEDVTKQPWA 353 (433)
T ss_dssp HHHHHTCCTTCEEEEESCTTTTTHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEECCTTSCCSSSGGG
T ss_pred HHHhhcCCCCCEEEECCCCCCHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEECCHHHHhhhhhhh
Confidence 344566778889999999999999999975 5799999999999999999999999985 99999999874321 2
Q ss_pred CCCCCEEEEcCCCCC
Q 009708 404 TVKCDKVLLDAPCSG 418 (528)
Q Consensus 404 ~~~fD~Vl~D~Pcsg 418 (528)
.++||+|++|||+.|
T Consensus 354 ~~~fD~Vv~dPPr~g 368 (433)
T 1uwv_A 354 KNGFDKVLLDPARAG 368 (433)
T ss_dssp TTCCSEEEECCCTTC
T ss_pred cCCCCEEEECCCCcc
Confidence 357999999999975
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=2.4e-11 Score=120.90 Aligned_cols=118 Identities=16% Similarity=0.204 Sum_probs=92.8
Q ss_pred HHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCC
Q 009708 326 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 405 (528)
Q Consensus 326 l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~ 405 (528)
.+...+.+.++.+|||+|||+|..+..+++.. +.+|+++|+|+.+++.++++++..|+..+++++++|+.+++ +
T Consensus 55 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~----~ 128 (287)
T 1kpg_A 55 LALGKLGLQPGMTLLDVGCGWGATMMRAVEKY--DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD----E 128 (287)
T ss_dssp HHHTTTTCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC----C
T ss_pred HHHHHcCCCCcCEEEEECCcccHHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC----C
Confidence 34555667889999999999999999999664 35999999999999999999999998767999999997654 6
Q ss_pred CCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCC
Q 009708 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSID 469 (528)
Q Consensus 406 ~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~ 469 (528)
+||+|++.-. +..-++ .+ ...+++++.++|||||++++.+....
T Consensus 129 ~fD~v~~~~~------l~~~~~-------~~-------~~~~l~~~~~~LkpgG~l~~~~~~~~ 172 (287)
T 1kpg_A 129 PVDRIVSIGA------FEHFGH-------ER-------YDAFFSLAHRLLPADGVMLLHTITGL 172 (287)
T ss_dssp CCSEEEEESC------GGGTCT-------TT-------HHHHHHHHHHHSCTTCEEEEEEEEEC
T ss_pred CeeEEEEeCc------hhhcCh-------HH-------HHHHHHHHHHhcCCCCEEEEEEecCC
Confidence 7999997422 211110 11 23468999999999999998776543
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.28 E-value=4.6e-12 Score=127.67 Aligned_cols=114 Identities=18% Similarity=0.088 Sum_probs=91.5
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEE
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 412 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~ 412 (528)
+.++.+|||+|||+|..+..++....+..+|+++|+|+.+++.+++++...|+.++++++++|+.+++.. ++||+|++
T Consensus 116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~fD~v~~ 193 (305)
T 3ocj_A 116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTR--EGYDLLTS 193 (305)
T ss_dssp CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCC--SCEEEEEC
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCcc--CCeEEEEE
Confidence 4678899999999999999986333456799999999999999999999999988899999999987533 78999997
Q ss_pred cCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 413 DAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 413 D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
+.+. ...| ++.. +..+++.+.++|||||+|++++..
T Consensus 194 ~~~~------~~~~------~~~~-------~~~~l~~~~~~LkpgG~l~i~~~~ 229 (305)
T 3ocj_A 194 NGLN------IYEP------DDAR-------VTELYRRFWQALKPGGALVTSFLT 229 (305)
T ss_dssp CSSG------GGCC------CHHH-------HHHHHHHHHHHEEEEEEEEEECCC
T ss_pred CChh------hhcC------CHHH-------HHHHHHHHHHhcCCCeEEEEEecC
Confidence 5443 1111 1111 234699999999999999988744
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.28 E-value=3.7e-11 Score=125.58 Aligned_cols=125 Identities=18% Similarity=0.155 Sum_probs=95.2
Q ss_pred HHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCC-------------------------------------CcEEEEE
Q 009708 324 AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSG-------------------------------------QGLVYAI 366 (528)
Q Consensus 324 s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~-------------------------------------~~~v~av 366 (528)
+..++.+....++..|||+|||+|++++.+|....+ ..+|+|+
T Consensus 190 Aa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~Gv 269 (393)
T 3k0b_A 190 AAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGG 269 (393)
T ss_dssp HHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEE
T ss_pred HHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEE
Confidence 444556677788899999999999999998876432 1469999
Q ss_pred cCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHH
Q 009708 367 DINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDE 446 (528)
Q Consensus 367 D~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~ 446 (528)
|+|+.+++.+++|++.+|+.+.++++++|+.++.. ..+||+|++|||+.- ...+...+..++..
T Consensus 270 Did~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~--~~~fD~Iv~NPPYg~--------------rl~~~~~l~~ly~~ 333 (393)
T 3k0b_A 270 DIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQT--EDEYGVVVANPPYGE--------------RLEDEEAVRQLYRE 333 (393)
T ss_dssp ESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCC--CCCSCEEEECCCCCC--------------SHHHHHHHHHHHHH
T ss_pred ECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCC--CCCCCEEEECCCCcc--------------ccCCchhHHHHHHH
Confidence 99999999999999999998779999999998764 358999999999831 11233445555665
Q ss_pred HHHHHhccCcCCCEEEEEcC
Q 009708 447 LLDAASLLVKPGGVLVYSTC 466 (528)
Q Consensus 447 lL~~a~~~LkpGG~LvysTc 466 (528)
+-+.... -+||.+++.|.
T Consensus 334 lg~~lk~--~~g~~~~iit~ 351 (393)
T 3k0b_A 334 MGIVYKR--MPTWSVYVLTS 351 (393)
T ss_dssp HHHHHHT--CTTCEEEEEEC
T ss_pred HHHHHhc--CCCCEEEEEEC
Confidence 5444443 46888887654
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=5.4e-12 Score=121.97 Aligned_cols=113 Identities=13% Similarity=0.091 Sum_probs=85.5
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCC-hHHHHHH---HHHHHHcCCCccEEEEcCccccccccCCCCCCE
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDIN-KGRLRIL---NETAKLHQVNSVIRTIHADLRTFADNSTVKCDK 409 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s-~~~l~~~---~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~ 409 (528)
+++++|||+|||+|..+..+++. .+..+|+|+|+| +.+++.+ +++++..|+.+ +.++++|+..++......+|.
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~-~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~-v~~~~~d~~~l~~~~~d~v~~ 100 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAIN-DQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSN-VVFVIAAAESLPFELKNIADS 100 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHT-CTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSS-EEEECCBTTBCCGGGTTCEEE
T ss_pred CCCCEEEEEeccCcHHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCC-eEEEEcCHHHhhhhccCeEEE
Confidence 57889999999999999999875 456799999999 6666665 88888888886 899999999885433356788
Q ss_pred EEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 410 VLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 410 Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
|.++.|.. .........+..+|..+.++|||||++++++
T Consensus 101 i~~~~~~~-----------------~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~ 139 (225)
T 3p2e_A 101 ISILFPWG-----------------TLLEYVIKPNRDILSNVADLAKKEAHFEFVT 139 (225)
T ss_dssp EEEESCCH-----------------HHHHHHHTTCHHHHHHHHTTEEEEEEEEEEE
T ss_pred EEEeCCCc-----------------HHhhhhhcchHHHHHHHHHhcCCCcEEEEEE
Confidence 88877751 1111111122457899999999999999843
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.27 E-value=5.6e-12 Score=119.62 Aligned_cols=114 Identities=8% Similarity=0.061 Sum_probs=83.6
Q ss_pred cCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHc------------CCCccEEEEcCcccc
Q 009708 331 VDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLH------------QVNSVIRTIHADLRT 398 (528)
Q Consensus 331 l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~------------g~~~~i~~~~~D~~~ 398 (528)
+.+.++.+|||+|||+|..+..+++. +.+|+|+|+|+.+++.++++.... +.. +++++++|+.+
T Consensus 18 l~~~~~~~vLD~GCG~G~~~~~la~~---g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~ 93 (203)
T 1pjz_A 18 LNVVPGARVLVPLCGKSQDMSWLSGQ---GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAP-GIEIWCGDFFA 93 (203)
T ss_dssp HCCCTTCEEEETTTCCSHHHHHHHHH---CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECS-SSEEEEECCSS
T ss_pred cccCCCCEEEEeCCCCcHhHHHHHHC---CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCC-ccEEEECcccc
Confidence 45567889999999999999999986 469999999999999999876431 123 48999999988
Q ss_pred ccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCC
Q 009708 399 FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 468 (528)
Q Consensus 399 ~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~ 468 (528)
++....++||+|++... +..- ...+ ...+++++.++|||||++++.++.+
T Consensus 94 l~~~~~~~fD~v~~~~~------l~~l-------~~~~-------~~~~l~~~~r~LkpgG~~~l~~~~~ 143 (203)
T 1pjz_A 94 LTARDIGHCAAFYDRAA------MIAL-------PADM-------RERYVQHLEALMPQACSGLLITLEY 143 (203)
T ss_dssp STHHHHHSEEEEEEESC------GGGS-------CHHH-------HHHHHHHHHHHSCSEEEEEEEEESS
T ss_pred CCcccCCCEEEEEECcc------hhhC-------CHHH-------HHHHHHHHHHHcCCCcEEEEEEEec
Confidence 76421257999986322 1111 1111 2346899999999999966666554
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.27 E-value=9.5e-12 Score=120.15 Aligned_cols=106 Identities=22% Similarity=0.249 Sum_probs=84.0
Q ss_pred cCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccc--cCCCCCC
Q 009708 331 VDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD--NSTVKCD 408 (528)
Q Consensus 331 l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~--~~~~~fD 408 (528)
+.+.++.+|||+|||+|..+..+++..+ .++|+|+|+++.+++.++++++.. + ++.++++|+..... .....||
T Consensus 70 ~~~~~~~~VLDlGcG~G~~~~~la~~~~-~~~v~gvD~s~~~~~~a~~~~~~~--~-~v~~~~~d~~~~~~~~~~~~~~D 145 (230)
T 1fbn_A 70 MPIKRDSKILYLGASAGTTPSHVADIAD-KGIVYAIEYAPRIMRELLDACAER--E-NIIPILGDANKPQEYANIVEKVD 145 (230)
T ss_dssp CCCCTTCEEEEESCCSSHHHHHHHHHTT-TSEEEEEESCHHHHHHHHHHTTTC--T-TEEEEECCTTCGGGGTTTSCCEE
T ss_pred cCCCCCCEEEEEcccCCHHHHHHHHHcC-CcEEEEEECCHHHHHHHHHHhhcC--C-CeEEEECCCCCcccccccCccEE
Confidence 3466889999999999999999999865 679999999999999999998765 4 48999999987211 1126799
Q ss_pred EEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 409 KVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 409 ~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
+|+.|+|..+ ....+++++.++|||||+++++
T Consensus 146 ~v~~~~~~~~------------------------~~~~~l~~~~~~LkpgG~l~i~ 177 (230)
T 1fbn_A 146 VIYEDVAQPN------------------------QAEILIKNAKWFLKKGGYGMIA 177 (230)
T ss_dssp EEEECCCSTT------------------------HHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEecCChh------------------------HHHHHHHHHHHhCCCCcEEEEE
Confidence 9998765411 1134589999999999999875
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.26 E-value=8.5e-12 Score=135.38 Aligned_cols=172 Identities=17% Similarity=0.137 Sum_probs=118.7
Q ss_pred ccceeEeecchHHHHHHhcC----CCCCCeEEEeCCccchHHHHHHHHcC--CCcEEEEEcCChHHHHHHHHHHHHcCCC
Q 009708 313 KEGLCAVQDESAGLVVAVVD----PQPGQSIVDCCAAPGGKTLYMASCLS--GQGLVYAIDINKGRLRILNETAKLHQVN 386 (528)
Q Consensus 313 ~~G~~~~Qd~~s~l~~~~l~----~~~g~~VLDl~aG~G~kt~~la~~~~--~~~~v~avD~s~~~l~~~~~n~~~~g~~ 386 (528)
..|.|+.....+.+++.++. +.++.+|+|.|||+|++.+.+++.+. +...++|+|+++..+..++.|+..+|+.
T Consensus 195 ~~G~fyTP~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~ 274 (542)
T 3lkd_A 195 KAGEFYTPQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVP 274 (542)
T ss_dssp CCSSCCCCHHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCC
T ss_pred cCCeecccHHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCC
Confidence 35778887888888888877 56788999999999999999998864 2568999999999999999999999985
Q ss_pred -ccEEEEcCccccc--cccCCCCCCEEEEcCCCCCCccccC--CchhhccCCHHH-HHHHHHHHHHHHHHHhccCc-CCC
Q 009708 387 -SVIRTIHADLRTF--ADNSTVKCDKVLLDAPCSGLGVLSK--RADLRWNRRLED-MEELKILQDELLDAASLLVK-PGG 459 (528)
Q Consensus 387 -~~i~~~~~D~~~~--~~~~~~~fD~Vl~D~Pcsg~G~~~~--~pd~~~~~~~~~-~~~l~~~q~~lL~~a~~~Lk-pGG 459 (528)
..+.+.++|.... +.....+||+|++|||+++...-.. ..+.+|.. .. +......+..++.++.++|| +||
T Consensus 275 ~~~~~I~~gDtL~~d~p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~--~G~~~~~s~~~~~Fl~~~l~~Lk~~gG 352 (542)
T 3lkd_A 275 IENQFLHNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSP--FGKLAPKSKADFAFLLHGYYHLKQDNG 352 (542)
T ss_dssp GGGEEEEESCTTTSCSCCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGG--GSSCCCTTCCHHHHHHHHHHTBCTTTC
T ss_pred cCccceEecceecccccccccccccEEEecCCcCCccccchhhhhhhhhhh--hhhcCCCchhhHHHHHHHHHHhCCCce
Confidence 3478999998765 3223468999999999974321100 01112210 00 00001112247999999999 999
Q ss_pred EEEEEcCC--CCchhhHHHHHHHHhhCCC
Q 009708 460 VLVYSTCS--IDPEENEERVEAFLLRHPE 486 (528)
Q Consensus 460 ~LvysTcs--~~~~Ene~~v~~~l~~~~~ 486 (528)
++++.+-. +.....+..+..+|.++-.
T Consensus 353 r~a~VlP~g~Lf~~~~~~~iRk~Lle~~~ 381 (542)
T 3lkd_A 353 VMAIVLPHGVLFRGNAEGTIRKALLEEGA 381 (542)
T ss_dssp EEEEEEETHHHHCCTHHHHHHHHHHHTTC
T ss_pred eEEEEecchHhhCCchhHHHHHHHHhCCc
Confidence 98766543 2222224556666655433
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=1.2e-11 Score=112.69 Aligned_cols=125 Identities=23% Similarity=0.270 Sum_probs=90.2
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccc-------cCCC
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-------NSTV 405 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~-------~~~~ 405 (528)
+.++.+|||+|||+|..+..+++.+++..+++++|+++ ++.. . +++++++|+..... ...+
T Consensus 20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~----------~-~~~~~~~d~~~~~~~~~~~~~~~~~ 87 (180)
T 1ej0_A 20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI----------V-GVDFLQGDFRDELVMKALLERVGDS 87 (180)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC----------T-TEEEEESCTTSHHHHHHHHHHHTTC
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc----------C-cEEEEEcccccchhhhhhhccCCCC
Confidence 67788999999999999999999865568999999999 6432 3 48899999987531 1236
Q ss_pred CCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHHHhh
Q 009708 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLR 483 (528)
Q Consensus 406 ~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~l~~ 483 (528)
+||+|++|+|+...+.. ..+.......+..+++.+.++|+|||.+++++... ++...+...+..
T Consensus 88 ~~D~i~~~~~~~~~~~~-----------~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~---~~~~~~~~~~~~ 151 (180)
T 1ej0_A 88 KVQVVMSDMAPNMSGTP-----------AVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQG---EGFDEYLREIRS 151 (180)
T ss_dssp CEEEEEECCCCCCCSCH-----------HHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESS---TTHHHHHHHHHH
T ss_pred ceeEEEECCCccccCCC-----------ccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecC---CcHHHHHHHHHH
Confidence 89999999998654431 11222334455788999999999999999765433 233334444544
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.1e-11 Score=125.32 Aligned_cols=131 Identities=12% Similarity=0.093 Sum_probs=93.2
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHH--cCC-CccEEEEcCccccccccCCCCCCEE
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKL--HQV-NSVIRTIHADLRTFADNSTVKCDKV 410 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~--~g~-~~~i~~~~~D~~~~~~~~~~~fD~V 410 (528)
..+.+|||+|||+|..+..+++. .+..+|+++|+++.+++.+++++.. .++ ..+++++++|+..+.....++||+|
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~-~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~I 172 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKH-PSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVI 172 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTC-TTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEE
T ss_pred CCCCEEEEECCCchHHHHHHHHc-CCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEE
Confidence 45679999999999999999875 3457999999999999999999876 344 3469999999987654345789999
Q ss_pred EEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC-CCchhhHHHHHHHHhh
Q 009708 411 LLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS-IDPEENEERVEAFLLR 483 (528)
Q Consensus 411 l~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs-~~~~Ene~~v~~~l~~ 483 (528)
++|+|... + |. . ...+.++++.+.++|+|||+|+..+.+ +...+....+..++++
T Consensus 173 i~d~~~~~-~-----~~-------~-----~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~ 228 (304)
T 2o07_A 173 ITDSSDPM-G-----PA-------E-----SLFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQS 228 (304)
T ss_dssp EEECC-----------------------------CHHHHHHHHHEEEEEEEEEEEECTTTCHHHHHHHHHHHHH
T ss_pred EECCCCCC-C-----cc-------h-----hhhHHHHHHHHHhccCCCeEEEEecCCcccchHHHHHHHHHHHH
Confidence 99987521 1 00 0 012346799999999999999987744 3332223334455554
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.25 E-value=1.9e-11 Score=115.36 Aligned_cols=103 Identities=15% Similarity=0.210 Sum_probs=86.2
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDA 414 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~ 414 (528)
++.+|||+|||+|..+..++... +..+|+++|+++.+++.++++++.+++++ ++++++|+..+.. .++||+|+++.
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~--~~~~D~i~~~~ 140 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVR-PEAHFTLLDSLGKRVRFLRQVQHELKLEN-IEPVQSRVEEFPS--EPPFDGVISRA 140 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHTTCSS-EEEEECCTTTSCC--CSCEEEEECSC
T ss_pred CCCeEEEECCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCC-eEEEecchhhCCc--cCCcCEEEEec
Confidence 47799999999999999999875 45799999999999999999999999987 9999999987653 36799999742
Q ss_pred CCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 415 PCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 415 Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
-. + ...+++.+.++|+|||.+++....
T Consensus 141 ~~-------------------~-------~~~~l~~~~~~L~~gG~l~~~~~~ 167 (207)
T 1jsx_A 141 FA-------------------S-------LNDMVSWCHHLPGEQGRFYALKGQ 167 (207)
T ss_dssp SS-------------------S-------HHHHHHHHTTSEEEEEEEEEEESS
T ss_pred cC-------------------C-------HHHHHHHHHHhcCCCcEEEEEeCC
Confidence 10 1 235699999999999999987554
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=2.1e-11 Score=119.82 Aligned_cols=123 Identities=17% Similarity=0.155 Sum_probs=95.5
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEE
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 412 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~ 412 (528)
..++.+|||+|||+|..++.++.. + .+|+|+|+++.+++.+++|++.+++. ++++++|+..... .++||+|++
T Consensus 118 ~~~~~~VLDiGcG~G~l~~~la~~-g--~~v~gvDi~~~~v~~a~~n~~~~~~~--v~~~~~d~~~~~~--~~~fD~Vv~ 190 (254)
T 2nxc_A 118 LRPGDKVLDLGTGSGVLAIAAEKL-G--GKALGVDIDPMVLPQAEANAKRNGVR--PRFLEGSLEAALP--FGPFDLLVA 190 (254)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHT-T--CEEEEEESCGGGHHHHHHHHHHTTCC--CEEEESCHHHHGG--GCCEEEEEE
T ss_pred cCCCCEEEEecCCCcHHHHHHHHh-C--CeEEEEECCHHHHHHHHHHHHHcCCc--EEEEECChhhcCc--CCCCCEEEE
Confidence 467889999999999999998875 2 39999999999999999999999986 7899999877432 357999999
Q ss_pred cCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHHHhhCCCceEec
Q 009708 413 DAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDP 491 (528)
Q Consensus 413 D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~l~~~~~~~~~~ 491 (528)
+.+. .. ...++..+.++|||||+++++.... +..+.+...++++ +|++..
T Consensus 191 n~~~------------------~~-------~~~~l~~~~~~LkpgG~lils~~~~---~~~~~v~~~l~~~-Gf~~~~ 240 (254)
T 2nxc_A 191 NLYA------------------EL-------HAALAPRYREALVPGGRALLTGILK---DRAPLVREAMAGA-GFRPLE 240 (254)
T ss_dssp ECCH------------------HH-------HHHHHHHHHHHEEEEEEEEEEEEEG---GGHHHHHHHHHHT-TCEEEE
T ss_pred CCcH------------------HH-------HHHHHHHHHHHcCCCCEEEEEeecc---CCHHHHHHHHHHC-CCEEEE
Confidence 7653 11 2456899999999999999875432 3344556666664 566654
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=2.3e-11 Score=128.51 Aligned_cols=78 Identities=22% Similarity=0.269 Sum_probs=69.7
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEE
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 412 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~ 412 (528)
+.++++|||+|||+|.+++.+|+. ..+|+|+|+++.+++.+++|++.+|++ ++++++|+.++.. .+||+|++
T Consensus 288 ~~~~~~VLDlgcG~G~~sl~la~~---~~~V~gvD~s~~ai~~A~~n~~~ngl~--v~~~~~d~~~~~~---~~fD~Vv~ 359 (425)
T 2jjq_A 288 LVEGEKILDMYSGVGTFGIYLAKR---GFNVKGFDSNEFAIEMARRNVEINNVD--AEFEVASDREVSV---KGFDTVIV 359 (425)
T ss_dssp HCCSSEEEEETCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHTCC--EEEEECCTTTCCC---TTCSEEEE
T ss_pred cCCCCEEEEeeccchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCCc--EEEEECChHHcCc---cCCCEEEE
Confidence 567889999999999999999975 469999999999999999999999987 8999999988753 27999999
Q ss_pred cCCCCC
Q 009708 413 DAPCSG 418 (528)
Q Consensus 413 D~Pcsg 418 (528)
|||..|
T Consensus 360 dPPr~g 365 (425)
T 2jjq_A 360 DPPRAG 365 (425)
T ss_dssp CCCTTC
T ss_pred cCCccc
Confidence 999865
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.25 E-value=1.8e-11 Score=122.48 Aligned_cols=118 Identities=12% Similarity=0.099 Sum_probs=93.7
Q ss_pred HHHHHhc----CCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccc
Q 009708 325 GLVVAVV----DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400 (528)
Q Consensus 325 ~l~~~~l----~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~ 400 (528)
..+...+ ...++.+|||+|||+|..+..+++.. +.+|+++|+++.+++.++++++..|+.++++++++|+..++
T Consensus 68 ~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 145 (297)
T 2o57_A 68 EWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKF--GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIP 145 (297)
T ss_dssp HHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCS
T ss_pred HHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCC
Confidence 3444555 67789999999999999999999875 35999999999999999999999998777999999998865
Q ss_pred ccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 401 DNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 401 ~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
. ..++||+|++.-.. .+-++ ...+|+++.++|||||+|++++..
T Consensus 146 ~-~~~~fD~v~~~~~l------~~~~~----------------~~~~l~~~~~~LkpgG~l~~~~~~ 189 (297)
T 2o57_A 146 C-EDNSYDFIWSQDAF------LHSPD----------------KLKVFQECARVLKPRGVMAITDPM 189 (297)
T ss_dssp S-CTTCEEEEEEESCG------GGCSC----------------HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred C-CCCCEeEEEecchh------hhcCC----------------HHHHHHHHHHHcCCCeEEEEEEec
Confidence 2 24689999974221 11111 235699999999999999988654
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.25 E-value=3.7e-11 Score=114.59 Aligned_cols=121 Identities=13% Similarity=0.140 Sum_probs=89.8
Q ss_pred HHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCc----cEEEEcCcccccc
Q 009708 325 GLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS----VIRTIHADLRTFA 400 (528)
Q Consensus 325 ~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~----~i~~~~~D~~~~~ 400 (528)
..+...+...++.+|||+|||+|..+..+++. .+..+|+++|+|+.+++.+++++...++.+ +++++++|+....
T Consensus 19 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 97 (219)
T 3jwg_A 19 GTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKD-KSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRD 97 (219)
T ss_dssp HHHHHHHHHTTCCEEEEETCTTCHHHHHHHTS-TTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCC
T ss_pred HHHHHHHhhcCCCEEEEecCCCCHHHHHHHhc-CCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccc
Confidence 34445555567889999999999999999875 334699999999999999999998888764 5999999986544
Q ss_pred ccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 401 DNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 401 ~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
. ..++||+|++... +..- ...+ ...+++.+.++|||||.++...+.
T Consensus 98 ~-~~~~fD~V~~~~~------l~~~-------~~~~-------~~~~l~~~~~~LkpgG~~i~~~~~ 143 (219)
T 3jwg_A 98 K-RFSGYDAATVIEV------IEHL-------DENR-------LQAFEKVLFEFTRPQTVIVSTPNK 143 (219)
T ss_dssp G-GGTTCSEEEEESC------GGGC-------CHHH-------HHHHHHHHHTTTCCSEEEEEEEBG
T ss_pred c-ccCCCCEEEEHHH------HHhC-------CHHH-------HHHHHHHHHHhhCCCEEEEEccch
Confidence 2 2368999997422 2111 1122 235699999999999977755443
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=5.2e-11 Score=111.31 Aligned_cols=112 Identities=23% Similarity=0.332 Sum_probs=81.9
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHcCCC--------cEEEEEcCChHHHHHHHHHHHHcCCCccEEEE-cCccccccc--
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQ--------GLVYAIDINKGRLRILNETAKLHQVNSVIRTI-HADLRTFAD-- 401 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~~~~--------~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~-~~D~~~~~~-- 401 (528)
+.++.+|||+|||+|..+..+++.++.. ++|+|+|+++.+ .+.+ ++++ ++|+.....
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~~~~-~~~~~~~d~~~~~~~~ 87 (196)
T 2nyu_A 20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------PLEG-ATFLCPADVTDPRTSQ 87 (196)
T ss_dssp CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------CCTT-CEEECSCCTTSHHHHH
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------cCCC-CeEEEeccCCCHHHHH
Confidence 5678999999999999999999986543 799999999842 2343 7888 899876431
Q ss_pred -----cCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 402 -----NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 402 -----~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
....+||+|++|.++...|.. ..+......++..+++.+.++|||||+|++.++.
T Consensus 88 ~~~~~~~~~~fD~V~~~~~~~~~~~~-----------~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 147 (196)
T 2nyu_A 88 RILEVLPGRRADVILSDMAPNATGFR-----------DLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWA 147 (196)
T ss_dssp HHHHHSGGGCEEEEEECCCCCCCSCH-----------HHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred HHHHhcCCCCCcEEEeCCCCCCCCCc-----------ccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence 112479999999865444431 0122233445678899999999999999987654
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.24 E-value=4.9e-11 Score=114.78 Aligned_cols=119 Identities=17% Similarity=0.225 Sum_probs=92.0
Q ss_pred HHHHhcC-CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCC
Q 009708 326 LVVAVVD-PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 404 (528)
Q Consensus 326 l~~~~l~-~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~ 404 (528)
.+..++. ..++.+|||+|||+|..+..+++.. +..+|+++|+|+.+++.+++++...+ +++++++|+..++..
T Consensus 34 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~d~~~~~~~-- 107 (234)
T 3dtn_A 34 VSVSIASVDTENPDILDLGAGTGLLSAFLMEKY-PEATFTLVDMSEKMLEIAKNRFRGNL---KVKYIEADYSKYDFE-- 107 (234)
T ss_dssp HHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHTCSCT---TEEEEESCTTTCCCC--
T ss_pred HHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHhhccCC---CEEEEeCchhccCCC--
Confidence 3444444 5678899999999999999999975 36799999999999999999887665 489999999887643
Q ss_pred CCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCc
Q 009708 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDP 470 (528)
Q Consensus 405 ~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~ 470 (528)
++||+|++.... ..-+ ... ...+|+++.++|||||++++++.....
T Consensus 108 ~~fD~v~~~~~l------~~~~-------~~~-------~~~~l~~~~~~LkpgG~l~~~~~~~~~ 153 (234)
T 3dtn_A 108 EKYDMVVSALSI------HHLE-------DED-------KKELYKRSYSILKESGIFINADLVHGE 153 (234)
T ss_dssp SCEEEEEEESCG------GGSC-------HHH-------HHHHHHHHHHHEEEEEEEEEEEECBCS
T ss_pred CCceEEEEeCcc------ccCC-------HHH-------HHHHHHHHHHhcCCCcEEEEEEecCCC
Confidence 789999986433 1111 111 134699999999999999998866544
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.24 E-value=1.8e-11 Score=122.05 Aligned_cols=117 Identities=20% Similarity=0.087 Sum_probs=92.9
Q ss_pred HHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCC
Q 009708 325 GLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 404 (528)
Q Consensus 325 ~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~ 404 (528)
.++..+....++.+|||+|||+|..+..+++..++..+|+|+|+|+.+++.+++++...+. +++++++|+.+++. .
T Consensus 12 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~--~ 87 (284)
T 3gu3_A 12 FLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY--DSEFLEGDATEIEL--N 87 (284)
T ss_dssp HHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSS--EEEEEESCTTTCCC--S
T ss_pred HHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcchhhcCc--C
Confidence 3444445667889999999999999999998765557999999999999999999988776 48999999998654 3
Q ss_pred CCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 405 ~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
++||+|++.... ..-++ ...+++++.++|||||+++..+..
T Consensus 88 ~~fD~v~~~~~l------~~~~~----------------~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 88 DKYDIAICHAFL------LHMTT----------------PETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp SCEEEEEEESCG------GGCSS----------------HHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CCeeEEEECChh------hcCCC----------------HHHHHHHHHHHcCCCCEEEEEecc
Confidence 689999986432 11111 135699999999999999987765
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.23 E-value=3.1e-11 Score=120.09 Aligned_cols=109 Identities=17% Similarity=0.128 Sum_probs=87.0
Q ss_pred HhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCC
Q 009708 329 AVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCD 408 (528)
Q Consensus 329 ~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD 408 (528)
..+...++.+|||+|||+|..+..++.. +.+|+|+|+|+.+++.+++++...|+ +++++++|+..+.. .++||
T Consensus 114 ~~~~~~~~~~vLD~GcG~G~~~~~l~~~---g~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~--~~~fD 186 (286)
T 3m70_A 114 DAAKIISPCKVLDLGCGQGRNSLYLSLL---GYDVTSWDHNENSIAFLNETKEKENL--NISTALYDINAANI--QENYD 186 (286)
T ss_dssp HHHHHSCSCEEEEESCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCGGGCCC--CSCEE
T ss_pred HHhhccCCCcEEEECCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHcCC--ceEEEEeccccccc--cCCcc
Confidence 3344447889999999999999999986 45999999999999999999999988 38999999988664 47899
Q ss_pred EEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 409 KVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 409 ~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
+|+++.+... .+.... ..+++.+.++|||||++++.
T Consensus 187 ~i~~~~~~~~-------------~~~~~~-------~~~l~~~~~~LkpgG~l~i~ 222 (286)
T 3m70_A 187 FIVSTVVFMF-------------LNRERV-------PSIIKNMKEHTNVGGYNLIV 222 (286)
T ss_dssp EEEECSSGGG-------------SCGGGH-------HHHHHHHHHTEEEEEEEEEE
T ss_pred EEEEccchhh-------------CCHHHH-------HHHHHHHHHhcCCCcEEEEE
Confidence 9998765421 111222 34699999999999997654
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.23 E-value=3.3e-11 Score=120.04 Aligned_cols=131 Identities=12% Similarity=0.066 Sum_probs=94.1
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHc--CC-CccEEEEcCccccccccCCCCCCEEE
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLH--QV-NSVIRTIHADLRTFADNSTVKCDKVL 411 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~--g~-~~~i~~~~~D~~~~~~~~~~~fD~Vl 411 (528)
.+.+|||+|||+|+.+..+++. .+..+|++||+++.+++.+++++... ++ ..+++++++|+..+.....++||+|+
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~-~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii 153 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKH-PSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTC-TTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCCEEEEECCchHHHHHHHHhC-CCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEE
Confidence 4579999999999999999875 34579999999999999999998653 34 34699999999886544457899999
Q ss_pred EcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCC-chhhHHHHHHHHhhC
Q 009708 412 LDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSID-PEENEERVEAFLLRH 484 (528)
Q Consensus 412 ~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~-~~Ene~~v~~~l~~~ 484 (528)
+|+|.. .+. ++..+ ..++++.+.+.|+|||+++..+.+.. ..+....+...+++.
T Consensus 154 ~d~~~~-~~~----~~~l~-------------~~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~ 209 (275)
T 1iy9_A 154 VDSTEP-VGP----AVNLF-------------TKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEI 209 (275)
T ss_dssp ESCSSC-CSC----CCCCS-------------TTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTT
T ss_pred ECCCCC-CCc----chhhh-------------HHHHHHHHHHhcCCCcEEEEEcCCccccHHHHHHHHHHHHHh
Confidence 998862 121 10000 12468889999999999998876532 223333344445543
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.23 E-value=2.7e-12 Score=139.51 Aligned_cols=173 Identities=14% Similarity=0.175 Sum_probs=118.7
Q ss_pred ccceeEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCC--------------CcEEEEEcCChHHHHHHHH
Q 009708 313 KEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSG--------------QGLVYAIDINKGRLRILNE 378 (528)
Q Consensus 313 ~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~--------------~~~v~avD~s~~~l~~~~~ 378 (528)
..|.|+.....+.+++.++.+.++ +|||.|||+|++.+.++..+.. ...++|+|+++.++..++.
T Consensus 223 ~~G~fyTP~~Vv~lmv~ll~p~~~-~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~ 301 (544)
T 3khk_A 223 QGGQYYTPKSIVTLIVEMLEPYKG-RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAM 301 (544)
T ss_dssp CSTTTCCCHHHHHHHHHHHCCCSE-EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHH
T ss_pred cCCeEeCCHHHHHHHHHHHhcCCC-eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHH
Confidence 358888888889999999998877 9999999999999888765421 3589999999999999999
Q ss_pred HHHHcCCCccEEEEcCccccccccCCCCCCEEEEcCCCCCCcccc--CCchhhccCCHHH-----HHHHHHHHHHHHHHH
Q 009708 379 TAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLS--KRADLRWNRRLED-----MEELKILQDELLDAA 451 (528)
Q Consensus 379 n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~--~~pd~~~~~~~~~-----~~~l~~~q~~lL~~a 451 (528)
|+..+|+...+.+.++|....+.....+||+|++|||++....-. ...+.+|...... +..-...+..++.++
T Consensus 302 Nl~l~gi~~~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~ 381 (544)
T 3khk_A 302 NMVIRGIDFNFGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHM 381 (544)
T ss_dssp HHHHTTCCCBCCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHH
T ss_pred HHHHhCCCcccceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHH
Confidence 999999876555588898765433346899999999997532111 0112222110000 000001122478999
Q ss_pred hccCcCCCEEEEEcCC--CCch-hhHHHHHHHHhhCCC
Q 009708 452 SLLVKPGGVLVYSTCS--IDPE-ENEERVEAFLLRHPE 486 (528)
Q Consensus 452 ~~~LkpGG~LvysTcs--~~~~-Ene~~v~~~l~~~~~ 486 (528)
+++|||||++++.+-. +... ..+..+..+|.++-.
T Consensus 382 l~~Lk~gGr~aiVlP~g~L~~~~~~~~~iRk~Lle~~~ 419 (544)
T 3khk_A 382 LYHLAPTGSMALLLANGSMSSNTNNEGEIRKTLVEQDL 419 (544)
T ss_dssp HHTEEEEEEEEEEEETHHHHCCGGGHHHHHHHHHHTTC
T ss_pred HHHhccCceEEEEecchhhhcCcchHHHHHHHHHhCCc
Confidence 9999999998876533 2222 245566666665533
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.23 E-value=3.1e-11 Score=120.06 Aligned_cols=107 Identities=21% Similarity=0.257 Sum_probs=87.3
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDA 414 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~ 414 (528)
++.+|||+|||+|..+..++.. +.+|+|+|+|+.+++.++++++..|+..+++++++|+..+.....++||+|++..
T Consensus 68 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~ 144 (285)
T 4htf_A 68 QKLRVLDAGGGEGQTAIKMAER---GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHA 144 (285)
T ss_dssp SCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEES
T ss_pred CCCEEEEeCCcchHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECc
Confidence 3679999999999999999986 5699999999999999999999999866799999999988744457899999853
Q ss_pred CCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcC
Q 009708 415 PCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466 (528)
Q Consensus 415 Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTc 466 (528)
.. ..-++ ...+|+.+.++|||||++++.+.
T Consensus 145 ~l------~~~~~----------------~~~~l~~~~~~LkpgG~l~~~~~ 174 (285)
T 4htf_A 145 VL------EWVAD----------------PRSVLQTLWSVLRPGGVLSLMFY 174 (285)
T ss_dssp CG------GGCSC----------------HHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hh------hcccC----------------HHHHHHHHHHHcCCCeEEEEEEe
Confidence 32 11111 13469999999999999998765
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.23 E-value=9.6e-12 Score=124.52 Aligned_cols=94 Identities=12% Similarity=0.109 Sum_probs=79.5
Q ss_pred eecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccc
Q 009708 319 VQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 398 (528)
Q Consensus 319 ~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~ 398 (528)
.+......++..+.+.++++|||+|||+|..|..+++. ..+|+|+|+|+.+++.+++++...+..++++++++|+..
T Consensus 12 ~d~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~ 88 (285)
T 1zq9_A 12 KNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEK---AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLK 88 (285)
T ss_dssp CCHHHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHH---SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTT
T ss_pred CCHHHHHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhh---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceec
Confidence 34445667777788888999999999999999999987 469999999999999999999887775569999999987
Q ss_pred ccccCCCCCCEEEEcCCCCC
Q 009708 399 FADNSTVKCDKVLLDAPCSG 418 (528)
Q Consensus 399 ~~~~~~~~fD~Vl~D~Pcsg 418 (528)
+.. ..||.|++|+|+..
T Consensus 89 ~~~---~~fD~vv~nlpy~~ 105 (285)
T 1zq9_A 89 TDL---PFFDTCVANLPYQI 105 (285)
T ss_dssp SCC---CCCSEEEEECCGGG
T ss_pred ccc---hhhcEEEEecCccc
Confidence 642 36999999999953
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=2.2e-11 Score=121.28 Aligned_cols=115 Identities=17% Similarity=0.152 Sum_probs=89.3
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEE
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 412 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~ 412 (528)
+.++.+|||+|||+|..+..++.. +..+|+|+|+|+.+++.+++++...++..+++++++|+...+....++||+|++
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~ 139 (298)
T 1ri5_A 62 TKRGDSVLDLGCGKGGDLLKYERA--GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISS 139 (298)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHH--TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEE
T ss_pred CCCCCeEEEECCCCCHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEE
Confidence 357889999999999999998875 346999999999999999999999888667999999998764323468999997
Q ss_pred cCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 413 DAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 413 D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
+... ... ..+..+ ...+|+.+.++|||||+|+++++.
T Consensus 140 ~~~l------~~~-----~~~~~~-------~~~~l~~~~~~LkpgG~l~~~~~~ 176 (298)
T 1ri5_A 140 QFSF------HYA-----FSTSES-------LDIAQRNIARHLRPGGYFIMTVPS 176 (298)
T ss_dssp ESCG------GGG-----GSSHHH-------HHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred Cchh------hhh-----cCCHHH-------HHHHHHHHHHhcCCCCEEEEEECC
Confidence 6322 000 011122 345699999999999999988764
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=3.7e-11 Score=118.17 Aligned_cols=136 Identities=13% Similarity=0.094 Sum_probs=91.9
Q ss_pred CCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHH----------cC------CCccEEEEcCc
Q 009708 332 DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKL----------HQ------VNSVIRTIHAD 395 (528)
Q Consensus 332 ~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~----------~g------~~~~i~~~~~D 395 (528)
.+.++.+|||+|||+|..+..+|+. +.+|+|+|+|+.+++.++++... .+ ...+++++++|
T Consensus 65 ~~~~~~~vLD~GCG~G~~~~~La~~---G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D 141 (252)
T 2gb4_A 65 KGQSGLRVFFPLCGKAIEMKWFADR---GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCS 141 (252)
T ss_dssp TTCCSCEEEETTCTTCTHHHHHHHT---TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESC
T ss_pred cCCCCCeEEEeCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECc
Confidence 3457889999999999999999985 45999999999999999765431 00 11348999999
Q ss_pred cccccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCch----
Q 009708 396 LRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPE---- 471 (528)
Q Consensus 396 ~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~---- 471 (528)
+.++.....++||+|++.... ..-| ..+ ...+++.+.++|||||++++.|......
T Consensus 142 ~~~l~~~~~~~FD~V~~~~~l------~~l~-------~~~-------~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~~g 201 (252)
T 2gb4_A 142 IFDLPRANIGKFDRIWDRGAL------VAIN-------PGD-------HDRYADIILSLLRKEFQYLVAVLSYDPTKHAG 201 (252)
T ss_dssp TTTGGGGCCCCEEEEEESSST------TTSC-------GGG-------HHHHHHHHHHTEEEEEEEEEEEEECCTTSCCC
T ss_pred cccCCcccCCCEEEEEEhhhh------hhCC-------HHH-------HHHHHHHHHHHcCCCeEEEEEEEecCCccCCC
Confidence 998765433689999963221 1111 111 2346899999999999997655432110
Q ss_pred ----hhHHHHHHHHhhCCCceEecC
Q 009708 472 ----ENEERVEAFLLRHPEFSIDPA 492 (528)
Q Consensus 472 ----Ene~~v~~~l~~~~~~~~~~~ 492 (528)
-..+.+..++.. .|++...
T Consensus 202 ~~~~~~~~el~~~l~~--~f~v~~~ 224 (252)
T 2gb4_A 202 PPFYVPSAELKRLFGT--KCSMQCL 224 (252)
T ss_dssp SSCCCCHHHHHHHHTT--TEEEEEE
T ss_pred CCCCCCHHHHHHHhhC--CeEEEEE
Confidence 123445556654 3666543
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.22 E-value=2.9e-11 Score=121.28 Aligned_cols=111 Identities=15% Similarity=0.138 Sum_probs=87.7
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHc-CCCccEEEEcCccccccccC-----CCCC
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLH-QVNSVIRTIHADLRTFADNS-----TVKC 407 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~-g~~~~i~~~~~D~~~~~~~~-----~~~f 407 (528)
.++.+|||+|||+|..+..+++.+.+..+|+|+|+|+.+++.++++++.. +...+++++++|+.++.... .++|
T Consensus 35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 114 (299)
T 3g5t_A 35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKI 114 (299)
T ss_dssp SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCe
Confidence 57889999999999999999987645789999999999999999999987 44446999999998865332 2689
Q ss_pred CEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 408 DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 408 D~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
|+|++..... |. + ...+++.+.++|||||+|++.+++
T Consensus 115 D~V~~~~~l~------------~~----~-------~~~~l~~~~~~LkpgG~l~i~~~~ 151 (299)
T 3g5t_A 115 DMITAVECAH------------WF----D-------FEKFQRSAYANLRKDGTIAIWGYA 151 (299)
T ss_dssp EEEEEESCGG------------GS----C-------HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred eEEeHhhHHH------------Hh----C-------HHHHHHHHHHhcCCCcEEEEEecC
Confidence 9999853321 11 1 235689999999999999875443
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.22 E-value=5.7e-11 Score=111.67 Aligned_cols=106 Identities=20% Similarity=0.183 Sum_probs=84.1
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEE
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 412 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~ 412 (528)
..++ +|||+|||+|..+..++.. +.+|+++|+++.+++.+++++...+. +++++++|+..+.. ..++||+|++
T Consensus 28 ~~~~-~vLdiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~-~~~~fD~v~~ 100 (202)
T 2kw5_A 28 IPQG-KILCLAEGEGRNACFLASL---GYEVTAVDQSSVGLAKAKQLAQEKGV--KITTVQSNLADFDI-VADAWEGIVS 100 (202)
T ss_dssp SCSS-EEEECCCSCTHHHHHHHTT---TCEEEEECSSHHHHHHHHHHHHHHTC--CEEEECCBTTTBSC-CTTTCSEEEE
T ss_pred CCCC-CEEEECCCCCHhHHHHHhC---CCeEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcChhhcCC-CcCCccEEEE
Confidence 3466 9999999999999998875 46999999999999999999998887 38899999987642 2468999997
Q ss_pred cCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 413 DAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 413 D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
.... ....+ ...+++.+.++|||||++++++..
T Consensus 101 ~~~~---------------~~~~~-------~~~~l~~~~~~L~pgG~l~~~~~~ 133 (202)
T 2kw5_A 101 IFCH---------------LPSSL-------RQQLYPKVYQGLKPGGVFILEGFA 133 (202)
T ss_dssp ECCC---------------CCHHH-------HHHHHHHHHTTCCSSEEEEEEEEC
T ss_pred Ehhc---------------CCHHH-------HHHHHHHHHHhcCCCcEEEEEEec
Confidence 3211 01122 345699999999999999988754
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.21 E-value=8.2e-11 Score=112.01 Aligned_cols=112 Identities=15% Similarity=0.219 Sum_probs=85.7
Q ss_pred cCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEE
Q 009708 331 VDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKV 410 (528)
Q Consensus 331 l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~V 410 (528)
+.+.++.+|||+|||+|..+..++.. ..+|+++|+++.+++.+++++. .+++++++|+..++.. ++||+|
T Consensus 41 ~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~-----~~~~~~~~d~~~~~~~--~~fD~v 110 (220)
T 3hnr_A 41 VVNKSFGNVLEFGVGTGNLTNKLLLA---GRTVYGIEPSREMRMIAKEKLP-----KEFSITEGDFLSFEVP--TSIDTI 110 (220)
T ss_dssp HHHTCCSEEEEECCTTSHHHHHHHHT---TCEEEEECSCHHHHHHHHHHSC-----TTCCEESCCSSSCCCC--SCCSEE
T ss_pred hhccCCCeEEEeCCCCCHHHHHHHhC---CCeEEEEeCCHHHHHHHHHhCC-----CceEEEeCChhhcCCC--CCeEEE
Confidence 34457889999999999999999986 5699999999999999988765 2478999999887543 789999
Q ss_pred EEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchh
Q 009708 411 LLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEE 472 (528)
Q Consensus 411 l~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~E 472 (528)
++.... ..-++ .. ...+|+.+.++|||||.+++++......+
T Consensus 111 ~~~~~l------~~~~~-------~~-------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~ 152 (220)
T 3hnr_A 111 VSTYAF------HHLTD-------DE-------KNVAIAKYSQLLNKGGKIVFADTIFADQD 152 (220)
T ss_dssp EEESCG------GGSCH-------HH-------HHHHHHHHHHHSCTTCEEEEEEECBSSHH
T ss_pred EECcch------hcCCh-------HH-------HHHHHHHHHHhcCCCCEEEEEeccccChH
Confidence 986332 21111 11 13468999999999999998875554443
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=4.9e-11 Score=121.44 Aligned_cols=115 Identities=15% Similarity=0.208 Sum_probs=87.3
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHc--CC-CccEEEEcCccccccccCCCCCCEE
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLH--QV-NSVIRTIHADLRTFADNSTVKCDKV 410 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~--g~-~~~i~~~~~D~~~~~~~~~~~fD~V 410 (528)
..+.+|||+|||+|+.+..+++. .+..+|+++|+|+.+++.+++++... ++ ..+++++++|+..+.....++||+|
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~-~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvI 193 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKY-KSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVI 193 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTC-TTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEE
T ss_pred CCCCEEEEEcCCccHHHHHHHHc-CCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEE
Confidence 34579999999999999999875 34579999999999999999998762 33 3459999999987654334689999
Q ss_pred EEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 411 LLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 411 l~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
++|++.. .| |. ..+ .+.++++.+.+.|||||++++.+.+
T Consensus 194 i~d~~~p-~~-----~~-------~~l-----~~~~~l~~~~~~LkpgG~lv~~~~~ 232 (321)
T 2pt6_A 194 IVDSSDP-IG-----PA-------ETL-----FNQNFYEKIYNALKPNGYCVAQCES 232 (321)
T ss_dssp EEECCCS-SS-----GG-------GGG-----SSHHHHHHHHHHEEEEEEEEEEECC
T ss_pred EECCcCC-CC-----cc-------hhh-----hHHHHHHHHHHhcCCCcEEEEEcCC
Confidence 9998531 11 10 000 0145789999999999999987655
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.20 E-value=7.4e-11 Score=116.57 Aligned_cols=116 Identities=16% Similarity=0.261 Sum_probs=92.1
Q ss_pred HHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCC
Q 009708 325 GLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 404 (528)
Q Consensus 325 ~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~ 404 (528)
.++.......++.+|||+|||+|..+..+++.. +..+|+++|+++.+++.+++++...++++ ++++++|+..++. ..
T Consensus 27 ~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-~~~~~~d~~~~~~-~~ 103 (276)
T 3mgg_A 27 KLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNN-PDAEITSIDISPESLEKARENTEKNGIKN-VKFLQANIFSLPF-ED 103 (276)
T ss_dssp HHHHTTCCCCTTCEEEETTCTTSHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEECCGGGCCS-CT
T ss_pred HHHhhcccCCCCCeEEEecCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCC-cEEEEcccccCCC-CC
Confidence 344444456788999999999999999999873 46799999999999999999999999885 9999999987653 24
Q ss_pred CCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 405 ~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
++||+|++.... ..-++ + ..+|+.+.++|||||++++.+
T Consensus 104 ~~fD~v~~~~~l------~~~~~------~----------~~~l~~~~~~L~pgG~l~~~~ 142 (276)
T 3mgg_A 104 SSFDHIFVCFVL------EHLQS------P----------EEALKSLKKVLKPGGTITVIE 142 (276)
T ss_dssp TCEEEEEEESCG------GGCSC------H----------HHHHHHHHHHEEEEEEEEEEE
T ss_pred CCeeEEEEechh------hhcCC------H----------HHHHHHHHHHcCCCcEEEEEE
Confidence 789999985433 11111 1 246889999999999999875
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.7e-11 Score=127.46 Aligned_cols=114 Identities=18% Similarity=0.234 Sum_probs=90.7
Q ss_pred hcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCE
Q 009708 330 VVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDK 409 (528)
Q Consensus 330 ~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~ 409 (528)
.+...++.+|||+|||+|..+..+++. +..+|+|+|+| .+++.++++++.+|+.++++++++|+.++... ++||+
T Consensus 58 ~~~~~~~~~VLDlGcGtG~ls~~la~~--g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~D~ 132 (376)
T 3r0q_C 58 NKHHFEGKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISLP--EKVDV 132 (376)
T ss_dssp TTTTTTTCEEEEESCTTTHHHHHHHHT--TCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCCS--SCEEE
T ss_pred ccccCCCCEEEEeccCcCHHHHHHHhc--CCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCcC--CcceE
Confidence 345667899999999999999999986 34599999999 99999999999999998899999999887532 78999
Q ss_pred EEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 410 VLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 410 Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
|++++...... +. .. ...++..+.++|||||+|+.+.++
T Consensus 133 Iv~~~~~~~l~----~e--------~~-------~~~~l~~~~~~LkpgG~li~~~~~ 171 (376)
T 3r0q_C 133 IISEWMGYFLL----RE--------SM-------FDSVISARDRWLKPTGVMYPSHAR 171 (376)
T ss_dssp EEECCCBTTBT----TT--------CT-------HHHHHHHHHHHEEEEEEEESSEEE
T ss_pred EEEcChhhccc----ch--------HH-------HHHHHHHHHhhCCCCeEEEEecCe
Confidence 99976432110 00 11 234588889999999999876665
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=2.8e-11 Score=124.17 Aligned_cols=119 Identities=15% Similarity=0.191 Sum_probs=90.0
Q ss_pred HHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCC
Q 009708 326 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 405 (528)
Q Consensus 326 l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~ 405 (528)
.+...+...++.+|||+|||+|..+..+++. +..+|+|+|+++ +++.++++++.+|+.++++++++|+.++.. ..+
T Consensus 55 ~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~--g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-~~~ 130 (340)
T 2fyt_A 55 FIYQNPHIFKDKVVLDVGCGTGILSMFAAKA--GAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHL-PVE 130 (340)
T ss_dssp HHHHCGGGTTTCEEEEETCTTSHHHHHHHHT--TCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCC-SCS
T ss_pred HHHhhhhhcCCCEEEEeeccCcHHHHHHHHc--CCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcC-CCC
Confidence 3344455677889999999999999999885 346999999997 999999999999996679999999987642 236
Q ss_pred CCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 406 ~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
+||+|++++.... . .+ ...+ ..+|..+.++|||||+++.+.|+
T Consensus 131 ~~D~Ivs~~~~~~--l--~~--------~~~~-------~~~l~~~~~~LkpgG~lip~~~~ 173 (340)
T 2fyt_A 131 KVDVIISEWMGYF--L--LF--------ESML-------DSVLYAKNKYLAKGGSVYPDICT 173 (340)
T ss_dssp CEEEEEECCCBTT--B--TT--------TCHH-------HHHHHHHHHHEEEEEEEESCEEE
T ss_pred cEEEEEEcCchhh--c--cC--------HHHH-------HHHHHHHHhhcCCCcEEEcccce
Confidence 8999999763211 1 00 0112 24588889999999999844443
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.20 E-value=8.1e-11 Score=112.36 Aligned_cols=108 Identities=17% Similarity=0.221 Sum_probs=85.3
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEc
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLD 413 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D 413 (528)
.++.+|||+|||+|..+..++.. ..+|+++|+|+.+++.++++++..+ . +++++++|+..+.. ..++||+|+++
T Consensus 37 ~~~~~vLDlG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~-~-~~~~~~~d~~~~~~-~~~~~D~v~~~ 110 (227)
T 1ve3_A 37 KKRGKVLDLACGVGGFSFLLEDY---GFEVVGVDISEDMIRKAREYAKSRE-S-NVEFIVGDARKLSF-EDKTFDYVIFI 110 (227)
T ss_dssp CSCCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTT-C-CCEEEECCTTSCCS-CTTCEEEEEEE
T ss_pred CCCCeEEEEeccCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcC-C-CceEEECchhcCCC-CCCcEEEEEEc
Confidence 34789999999999999999886 2399999999999999999999887 3 48999999987542 23689999998
Q ss_pred CCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 414 APCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 414 ~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
.+.. . ....+ ...+++.+.++|||||++++.++.
T Consensus 111 ~~~~---~----------~~~~~-------~~~~l~~~~~~L~~gG~l~~~~~~ 144 (227)
T 1ve3_A 111 DSIV---H----------FEPLE-------LNQVFKEVRRVLKPSGKFIMYFTD 144 (227)
T ss_dssp SCGG---G----------CCHHH-------HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CchH---h----------CCHHH-------HHHHHHHHHHHcCCCcEEEEEecC
Confidence 6621 0 01112 245699999999999999988765
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.20 E-value=5.2e-11 Score=114.92 Aligned_cols=130 Identities=19% Similarity=0.123 Sum_probs=95.0
Q ss_pred CCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAP 415 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~P 415 (528)
+.+|||+|||+|..+..++. ...+|+|+|+|+.+++.+++++...+...+++++++|+..+.. ..+||+|++...
T Consensus 67 ~~~vLDiGcG~G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~~~fD~v~~~~~ 141 (235)
T 3lcc_A 67 LGRALVPGCGGGHDVVAMAS---PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRP--TELFDLIFDYVF 141 (235)
T ss_dssp CEEEEEETCTTCHHHHHHCB---TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCC--SSCEEEEEEESS
T ss_pred CCCEEEeCCCCCHHHHHHHh---CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCC--CCCeeEEEEChh
Confidence 34999999999999998875 3678999999999999999999876665569999999998663 358999997533
Q ss_pred CCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCch-------hhHHHHHHHHhhCCCce
Q 009708 416 CSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPE-------ENEERVEAFLLRHPEFS 488 (528)
Q Consensus 416 csg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~-------Ene~~v~~~l~~~~~~~ 488 (528)
.. .-+ +.+. ..+++.+.++|||||+|++.+...... -..+.+..++.+. +|+
T Consensus 142 l~------~~~-------~~~~-------~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gf~ 200 (235)
T 3lcc_A 142 FC------AIE-------PEMR-------PAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEEVLVPI-GFK 200 (235)
T ss_dssp TT------TSC-------GGGH-------HHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHHHHHHHGGG-TEE
T ss_pred hh------cCC-------HHHH-------HHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCHHHHHHHHHHc-CCe
Confidence 21 111 1222 346899999999999999876543221 1244566666654 566
Q ss_pred Eec
Q 009708 489 IDP 491 (528)
Q Consensus 489 ~~~ 491 (528)
++.
T Consensus 201 ~~~ 203 (235)
T 3lcc_A 201 AVS 203 (235)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.20 E-value=3e-11 Score=124.31 Aligned_cols=118 Identities=15% Similarity=0.165 Sum_probs=91.2
Q ss_pred HHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCC
Q 009708 327 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVK 406 (528)
Q Consensus 327 ~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~ 406 (528)
+...+...++.+|||+|||+|..+..+++. +..+|+|+|+++ +++.++++++.+|+.++++++++|+.++.. +++
T Consensus 42 i~~~l~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~--~~~ 116 (348)
T 2y1w_A 42 ILQNHTDFKDKIVLDVGCGSGILSFFAAQA--GARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSL--PEQ 116 (348)
T ss_dssp HHHTGGGTTTCEEEEETCTTSHHHHHHHHT--TCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCC--SSC
T ss_pred HHhccccCCcCEEEEcCCCccHHHHHHHhC--CCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCCC--CCc
Confidence 344455567889999999999999999875 456999999996 889999999999997679999999987642 367
Q ss_pred CCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCC
Q 009708 407 CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSID 469 (528)
Q Consensus 407 fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~ 469 (528)
||+|+++++...... +.. ...+..+.++|||||.++.+.++++
T Consensus 117 ~D~Ivs~~~~~~~~~-------------~~~-------~~~l~~~~~~LkpgG~li~~~~~~~ 159 (348)
T 2y1w_A 117 VDIIISEPMGYMLFN-------------ERM-------LESYLHAKKYLKPSGNMFPTIGDVH 159 (348)
T ss_dssp EEEEEECCCBTTBTT-------------TSH-------HHHHHHGGGGEEEEEEEESCEEEEE
T ss_pred eeEEEEeCchhcCCh-------------HHH-------HHHHHHHHhhcCCCeEEEEecCcEE
Confidence 999999876432110 111 2346788999999999997666543
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.1e-10 Score=115.19 Aligned_cols=124 Identities=15% Similarity=0.087 Sum_probs=92.6
Q ss_pred hHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChH------HHHHHHHHHHHcCCCccEEEEcCc-
Q 009708 323 SAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKG------RLRILNETAKLHQVNSVIRTIHAD- 395 (528)
Q Consensus 323 ~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~------~l~~~~~n~~~~g~~~~i~~~~~D- 395 (528)
....+...+.+.++.+|||+|||+|..+..++...++.++|+++|+|+. +++.++++++..++.++++++++|
T Consensus 31 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~ 110 (275)
T 3bkx_A 31 HRLAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTN 110 (275)
T ss_dssp HHHHHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCC
T ss_pred HHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECCh
Confidence 3445556677888999999999999999999988655579999999997 999999999998886679999998
Q ss_pred cc--cccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCC
Q 009708 396 LR--TFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSID 469 (528)
Q Consensus 396 ~~--~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~ 469 (528)
.. .++ ...++||+|++..... ..+ ++ ..+++....+++|||++++++....
T Consensus 111 ~~~~~~~-~~~~~fD~v~~~~~l~------~~~------~~----------~~~~~~~~~l~~~gG~l~~~~~~~~ 163 (275)
T 3bkx_A 111 LSDDLGP-IADQHFDRVVLAHSLW------YFA------SA----------NALALLFKNMAAVCDHVDVAEWSMQ 163 (275)
T ss_dssp TTTCCGG-GTTCCCSEEEEESCGG------GSS------CH----------HHHHHHHHHHTTTCSEEEEEEECSS
T ss_pred hhhccCC-CCCCCEEEEEEccchh------hCC------CH----------HHHHHHHHHHhCCCCEEEEEEecCC
Confidence 32 222 1246899999864431 111 11 1246666677778999998876653
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.19 E-value=3e-11 Score=111.26 Aligned_cols=137 Identities=16% Similarity=0.097 Sum_probs=90.2
Q ss_pred cchHHHHHHhcCC--CCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccc
Q 009708 321 DESAGLVVAVVDP--QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 398 (528)
Q Consensus 321 d~~s~l~~~~l~~--~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~ 398 (528)
.+.+..++..+.. .++.+|||+|||+|..+..+++. . +|+|+|+|+.+++. .++++++++|+.+
T Consensus 7 ~~~~~~l~~~l~~~~~~~~~vLD~GcG~G~~~~~l~~~---~-~v~gvD~s~~~~~~----------~~~~~~~~~d~~~ 72 (170)
T 3q87_B 7 GEDTYTLMDALEREGLEMKIVLDLGTSTGVITEQLRKR---N-TVVSTDLNIRALES----------HRGGNLVRADLLC 72 (170)
T ss_dssp CHHHHHHHHHHHHHTCCSCEEEEETCTTCHHHHHHTTT---S-EEEEEESCHHHHHT----------CSSSCEEECSTTT
T ss_pred CccHHHHHHHHHhhcCCCCeEEEeccCccHHHHHHHhc---C-cEEEEECCHHHHhc----------ccCCeEEECChhh
Confidence 4445555555554 66789999999999999999875 2 99999999999987 2347899999987
Q ss_pred ccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHH
Q 009708 399 FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVE 478 (528)
Q Consensus 399 ~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~ 478 (528)
... .++||+|++|||+...... +. |...... ..++..+.+.+ |||.+++++.+. ...+.+.
T Consensus 73 ~~~--~~~fD~i~~n~~~~~~~~~----~~-~~~~~~~--------~~~~~~~~~~l-pgG~l~~~~~~~---~~~~~l~ 133 (170)
T 3q87_B 73 SIN--QESVDVVVFNPPYVPDTDD----PI-IGGGYLG--------REVIDRFVDAV-TVGMLYLLVIEA---NRPKEVL 133 (170)
T ss_dssp TBC--GGGCSEEEECCCCBTTCCC----TT-TBCCGGG--------CHHHHHHHHHC-CSSEEEEEEEGG---GCHHHHH
T ss_pred hcc--cCCCCEEEECCCCccCCcc----cc-ccCCcch--------HHHHHHHHhhC-CCCEEEEEEecC---CCHHHHH
Confidence 432 2689999999998432110 00 1101111 12355555556 999999876543 2334556
Q ss_pred HHHhhCCCceEec
Q 009708 479 AFLLRHPEFSIDP 491 (528)
Q Consensus 479 ~~l~~~~~~~~~~ 491 (528)
.++++. +|+...
T Consensus 134 ~~l~~~-gf~~~~ 145 (170)
T 3q87_B 134 ARLEER-GYGTRI 145 (170)
T ss_dssp HHHHHT-TCEEEE
T ss_pred HHHHHC-CCcEEE
Confidence 667654 465543
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=1.9e-11 Score=123.62 Aligned_cols=107 Identities=16% Similarity=0.161 Sum_probs=74.8
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcC----ChHHHHHHHHHHHHcCCCccEEEEcC-ccccccccCCCCC
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDI----NKGRLRILNETAKLHQVNSVIRTIHA-DLRTFADNSTVKC 407 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~----s~~~l~~~~~n~~~~g~~~~i~~~~~-D~~~~~~~~~~~f 407 (528)
+.+|.+|||+|||||++|..++++ ++|+|+|+ ++.+++.+ ..+..+. ++++++++ |+..++ ..+|
T Consensus 80 ~~~g~~VLDlGcG~G~~s~~la~~----~~V~gvD~~~~~~~~~~~~~--~~~~~~~-~~v~~~~~~D~~~l~---~~~f 149 (305)
T 2p41_A 80 VTPEGKVVDLGCGRGGWSYYCGGL----KNVREVKGLTKGGPGHEEPI--PMSTYGW-NLVRLQSGVDVFFIP---PERC 149 (305)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTS----TTEEEEEEECCCSTTSCCCC--CCCSTTG-GGEEEECSCCTTTSC---CCCC
T ss_pred CCCCCEEEEEcCCCCHHHHHHHhc----CCEEEEeccccCchhHHHHH--HhhhcCC-CCeEEEeccccccCC---cCCC
Confidence 467889999999999999999875 57999999 55443211 1112222 35899999 988764 2589
Q ss_pred CEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 408 DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 408 D~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
|+|++|.+++ +|.. ...... +..+|..+.++|||||.++..+
T Consensus 150 D~V~sd~~~~-~g~~-------------~~d~~~--~l~~L~~~~~~LkpGG~~v~kv 191 (305)
T 2p41_A 150 DTLLCDIGES-SPNP-------------TVEAGR--TLRVLNLVENWLSNNTQFCVKV 191 (305)
T ss_dssp SEEEECCCCC-CSSH-------------HHHHHH--HHHHHHHHHHHCCTTCEEEEEE
T ss_pred CEEEECCccc-cCcc-------------hhhHHH--HHHHHHHHHHHhCCCCEEEEEe
Confidence 9999998885 4541 111111 1146888999999999988643
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=1.2e-11 Score=127.28 Aligned_cols=113 Identities=14% Similarity=0.175 Sum_probs=89.3
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEE
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 412 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~ 412 (528)
..++.+|||+|||+|..+..+++. +..+|+|+|+|+ +++.++++++.+|+.++++++++|+.++.. ..++||+|++
T Consensus 64 ~~~~~~VLDvGcG~G~~~~~la~~--g~~~v~gvD~s~-~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~Iis 139 (349)
T 3q7e_A 64 LFKDKVVLDVGSGTGILCMFAAKA--GARKVIGIECSS-ISDYAVKIVKANKLDHVVTIIKGKVEEVEL-PVEKVDIIIS 139 (349)
T ss_dssp HHTTCEEEEESCTTSHHHHHHHHT--TCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCC-SSSCEEEEEE
T ss_pred cCCCCEEEEEeccchHHHHHHHHC--CCCEEEEECcHH-HHHHHHHHHHHcCCCCcEEEEECcHHHccC-CCCceEEEEE
Confidence 356889999999999999999986 456999999995 999999999999999889999999988742 2478999999
Q ss_pred cCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCC
Q 009708 413 DAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 468 (528)
Q Consensus 413 D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~ 468 (528)
+++..... .. .. ...++..+.++|||||+++...+++
T Consensus 140 ~~~~~~l~---~~---------~~-------~~~~l~~~~r~LkpgG~li~~~~~~ 176 (349)
T 3q7e_A 140 EWMGYCLF---YE---------SM-------LNTVLHARDKWLAPDGLIFPDRATL 176 (349)
T ss_dssp CCCBBTBT---BT---------CC-------HHHHHHHHHHHEEEEEEEESCEEEE
T ss_pred cccccccc---Cc---------hh-------HHHHHHHHHHhCCCCCEEccccceE
Confidence 86543211 00 11 1245888899999999998665553
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=4.9e-11 Score=116.60 Aligned_cols=116 Identities=17% Similarity=0.223 Sum_probs=89.4
Q ss_pred HHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCC
Q 009708 326 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 405 (528)
Q Consensus 326 l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~ 405 (528)
.+...+.+.++.+|||+|||+|..+..++... ..+|+|+|+|+.+++.+++++... .+++++++|+..++. ..+
T Consensus 46 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~-~~~ 119 (266)
T 3ujc_A 46 KILSDIELNENSKVLDIGSGLGGGCMYINEKY--GAHTHGIDICSNIVNMANERVSGN---NKIIFEANDILTKEF-PEN 119 (266)
T ss_dssp HHTTTCCCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHTCCSC---TTEEEEECCTTTCCC-CTT
T ss_pred HHHHhcCCCCCCEEEEECCCCCHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEECccccCCC-CCC
Confidence 34445567789999999999999999999875 469999999999999999877654 358999999988642 247
Q ss_pred CCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 406 ~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
+||+|++.... ..- ...+ ...+|+.+.++|||||++++++..
T Consensus 120 ~fD~v~~~~~l------~~~-------~~~~-------~~~~l~~~~~~L~pgG~l~~~~~~ 161 (266)
T 3ujc_A 120 NFDLIYSRDAI------LAL-------SLEN-------KNKLFQKCYKWLKPTGTLLITDYC 161 (266)
T ss_dssp CEEEEEEESCG------GGS-------CHHH-------HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred cEEEEeHHHHH------Hhc-------ChHH-------HHHHHHHHHHHcCCCCEEEEEEec
Confidence 89999974322 111 1122 245699999999999999988754
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=2.1e-11 Score=118.02 Aligned_cols=114 Identities=18% Similarity=0.178 Sum_probs=85.1
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccc-cCCCCCCEEE
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NSTVKCDKVL 411 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~-~~~~~fD~Vl 411 (528)
+.++.+|||+|||+|..+..++.. +..+|+++|+|+.+++.++++++..+ . +++++++|+.++.. ...++||+|+
T Consensus 58 ~~~~~~vLDiGcGtG~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~-~-~v~~~~~d~~~~~~~~~~~~fD~V~ 133 (236)
T 1zx0_A 58 SSKGGRVLEVGFGMAIAASKVQEA--PIDEHWIIECNDGVFQRLRDWAPRQT-H-KVIPLKGLWEDVAPTLPDGHFDGIL 133 (236)
T ss_dssp TTTCEEEEEECCTTSHHHHHHHTS--CEEEEEEEECCHHHHHHHHHHGGGCS-S-EEEEEESCHHHHGGGSCTTCEEEEE
T ss_pred CCCCCeEEEEeccCCHHHHHHHhc--CCCeEEEEcCCHHHHHHHHHHHHhcC-C-CeEEEecCHHHhhcccCCCceEEEE
Confidence 467889999999999999999753 23489999999999999999988877 3 48999999988632 2246899999
Q ss_pred EcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 412 LDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 412 ~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
+|.-. . . .++. .. .....+++++.++|||||+|++.+++
T Consensus 134 ~d~~~--~-~---~~~~----~~-------~~~~~~l~~~~r~LkpgG~l~~~~~~ 172 (236)
T 1zx0_A 134 YDTYP--L-S---EETW----HT-------HQFNFIKNHAFRLLKPGGVLTYCNLT 172 (236)
T ss_dssp ECCCC--C-B---GGGT----TT-------HHHHHHHHTHHHHEEEEEEEEECCHH
T ss_pred ECCcc--c-c---hhhh----hh-------hhHHHHHHHHHHhcCCCeEEEEEecC
Confidence 97211 0 0 0110 00 11244689999999999999986654
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.18 E-value=2.5e-10 Score=108.08 Aligned_cols=126 Identities=17% Similarity=0.058 Sum_probs=91.5
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEE
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 412 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~ 412 (528)
..++.+|||+|||+|..+..+++. +.+|+++|+|+.+++.+++++ + +.++++|+..+. ..++||+|++
T Consensus 41 ~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~---~----~~~~~~d~~~~~--~~~~fD~v~~ 108 (211)
T 3e23_A 41 LPAGAKILELGCGAGYQAEAMLAA---GFDVDATDGSPELAAEASRRL---G----RPVRTMLFHQLD--AIDAYDAVWA 108 (211)
T ss_dssp SCTTCEEEESSCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHH---T----SCCEECCGGGCC--CCSCEEEEEE
T ss_pred cCCCCcEEEECCCCCHHHHHHHHc---CCeEEEECCCHHHHHHHHHhc---C----CceEEeeeccCC--CCCcEEEEEe
Confidence 456889999999999999999985 469999999999999999887 2 456788888776 3578999997
Q ss_pred cCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCch-----------hhHHHHHHHH
Q 009708 413 DAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPE-----------ENEERVEAFL 481 (528)
Q Consensus 413 D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~-----------Ene~~v~~~l 481 (528)
.... ..- ...+ ...+|+.+.++|||||+++++++..... -..+.+..++
T Consensus 109 ~~~l------~~~-------~~~~-------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 168 (211)
T 3e23_A 109 HACL------LHV-------PRDE-------LADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARY 168 (211)
T ss_dssp CSCG------GGS-------CHHH-------HHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHH
T ss_pred cCch------hhc-------CHHH-------HHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHH
Confidence 5322 111 1122 2456999999999999999886654321 1344555666
Q ss_pred hhCCC-ceEec
Q 009708 482 LRHPE-FSIDP 491 (528)
Q Consensus 482 ~~~~~-~~~~~ 491 (528)
++. + |+++.
T Consensus 169 ~~a-G~f~~~~ 178 (211)
T 3e23_A 169 AEA-GTWASVA 178 (211)
T ss_dssp HHH-CCCSEEE
T ss_pred HhC-CCcEEEE
Confidence 654 4 65543
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.18 E-value=3.8e-11 Score=121.81 Aligned_cols=130 Identities=14% Similarity=0.099 Sum_probs=92.2
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHc--CC-CccEEEEcCccccccccCCCCCCEEE
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLH--QV-NSVIRTIHADLRTFADNSTVKCDKVL 411 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~--g~-~~~i~~~~~D~~~~~~~~~~~fD~Vl 411 (528)
.+.+|||+|||+|+.+..+++. .+..+|+++|+++.+++.+++++... ++ ..+++++++|+..+.....++||+|+
T Consensus 108 ~~~~VLdIG~G~G~~~~~l~~~-~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 186 (314)
T 2b2c_A 108 DPKRVLIIGGGDGGILREVLKH-ESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 186 (314)
T ss_dssp SCCEEEEESCTTSHHHHHHTTC-TTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHHc-CCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence 4579999999999999999875 34579999999999999999998764 44 34699999999886543457899999
Q ss_pred EcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCC-chhhHHHHHHHHhh
Q 009708 412 LDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSID-PEENEERVEAFLLR 483 (528)
Q Consensus 412 ~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~-~~Ene~~v~~~l~~ 483 (528)
+|++.. .+ |. .. + ...++++.+.++|+|||+|+..+.+.. ..+....+..++++
T Consensus 187 ~d~~~~-~~-----~~-------~~---l--~t~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~ 241 (314)
T 2b2c_A 187 TDSSDP-VG-----PA-------ES---L--FGQSYYELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRK 241 (314)
T ss_dssp ECCC-------------------------------HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHH
T ss_pred EcCCCC-CC-----cc-------hh---h--hHHHHHHHHHhhcCCCeEEEEECCCcccCHHHHHHHHHHHHH
Confidence 998641 11 00 00 0 125679999999999999998875543 22333344455554
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.2e-10 Score=114.90 Aligned_cols=117 Identities=15% Similarity=0.023 Sum_probs=81.4
Q ss_pred hHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc
Q 009708 323 SAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 402 (528)
Q Consensus 323 ~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~ 402 (528)
....+...+.+.++.+|||+|||+|..+..+++. ..+|+|+|+|+.+++.+++++....+. ..+...+.. ....
T Consensus 33 ~~~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~---g~~V~gvD~S~~ml~~Ar~~~~~~~v~--~~~~~~~~~-~~~~ 106 (261)
T 3iv6_A 33 DRENDIFLENIVPGSTVAVIGASTRFLIEKALER---GASVTVFDFSQRMCDDLAEALADRCVT--IDLLDITAE-IPKE 106 (261)
T ss_dssp HHHHHHHTTTCCTTCEEEEECTTCHHHHHHHHHT---TCEEEEEESCHHHHHHHHHHTSSSCCE--EEECCTTSC-CCGG
T ss_pred HHHHHHHhcCCCCcCEEEEEeCcchHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHhccce--eeeeecccc-cccc
Confidence 3445566778889999999999999999999985 469999999999999999987655211 222222220 0111
Q ss_pred CCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcC
Q 009708 403 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466 (528)
Q Consensus 403 ~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTc 466 (528)
..++||+|+++.... + ....+ ....+..+.++| |||+|+++..
T Consensus 107 ~~~~fD~Vv~~~~l~------~-------~~~~~-------~~~~l~~l~~lL-PGG~l~lS~~ 149 (261)
T 3iv6_A 107 LAGHFDFVLNDRLIN------R-------FTTEE-------ARRACLGMLSLV-GSGTVRASVK 149 (261)
T ss_dssp GTTCCSEEEEESCGG------G-------SCHHH-------HHHHHHHHHHHH-TTSEEEEEEE
T ss_pred cCCCccEEEEhhhhH------h-------CCHHH-------HHHHHHHHHHhC-cCcEEEEEec
Confidence 246899999875431 1 11122 234588888999 9999997754
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=1.4e-10 Score=109.96 Aligned_cols=113 Identities=15% Similarity=0.205 Sum_probs=86.8
Q ss_pred HHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCC
Q 009708 326 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 405 (528)
Q Consensus 326 l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~ 405 (528)
++..+....++.+|||+|||+|..+..++.. ..+|+++|+++.+++.+++ .+..+ ++++++|+.++. ..+
T Consensus 37 ~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~----~~~~~-~~~~~~d~~~~~--~~~ 106 (218)
T 3ou2_A 37 ALERLRAGNIRGDVLELASGTGYWTRHLSGL---ADRVTALDGSAEMIAEAGR----HGLDN-VEFRQQDLFDWT--PDR 106 (218)
T ss_dssp HHHHHTTTTSCSEEEEESCTTSHHHHHHHHH---SSEEEEEESCHHHHHHHGG----GCCTT-EEEEECCTTSCC--CSS
T ss_pred HHHHHhcCCCCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHh----cCCCC-eEEEecccccCC--CCC
Confidence 3333334677889999999999999999987 4699999999999999887 56554 899999998872 347
Q ss_pred CCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCC
Q 009708 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 468 (528)
Q Consensus 406 ~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~ 468 (528)
+||+|++.. ++..-++ . ....+|+.+.++|||||++++++...
T Consensus 107 ~~D~v~~~~------~l~~~~~-------~-------~~~~~l~~~~~~L~pgG~l~~~~~~~ 149 (218)
T 3ou2_A 107 QWDAVFFAH------WLAHVPD-------D-------RFEAFWESVRSAVAPGGVVEFVDVTD 149 (218)
T ss_dssp CEEEEEEES------CGGGSCH-------H-------HHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred ceeEEEEec------hhhcCCH-------H-------HHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 899999742 2222221 1 12456999999999999999988765
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.2e-10 Score=113.52 Aligned_cols=117 Identities=20% Similarity=0.173 Sum_probs=89.3
Q ss_pred ecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccc
Q 009708 320 QDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 399 (528)
Q Consensus 320 Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~ 399 (528)
|......+...+.+.++.+|||+|||+|..+..++...+ ..+|+++|+|+.+++.++++ .. +++++++|+..+
T Consensus 18 ~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~~D~s~~~~~~a~~~-----~~-~~~~~~~d~~~~ 90 (259)
T 2p35_A 18 RTRPARDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYG-VNVITGIDSDDDMLEKAADR-----LP-NTNFGKADLATW 90 (259)
T ss_dssp GGHHHHHHHTTCCCSCCSSEEEETCTTTHHHHHHHHHHC-TTSEEEEESCHHHHHHHHHH-----ST-TSEEEECCTTTC
T ss_pred HHHHHHHHHHhcCCCCCCEEEEecCcCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHh-----CC-CcEEEECChhhc
Confidence 333344455566677888999999999999999998753 57899999999999999887 23 378999999887
Q ss_pred cccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 400 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 400 ~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
. ..++||+|++.... ...+ + ...+|+++.++|||||+|++++..
T Consensus 91 ~--~~~~fD~v~~~~~l------~~~~---------~-------~~~~l~~~~~~L~pgG~l~~~~~~ 134 (259)
T 2p35_A 91 K--PAQKADLLYANAVF------QWVP---------D-------HLAVLSQLMDQLESGGVLAVQMPD 134 (259)
T ss_dssp C--CSSCEEEEEEESCG------GGST---------T-------HHHHHHHHGGGEEEEEEEEEEEEC
T ss_pred C--ccCCcCEEEEeCch------hhCC---------C-------HHHHHHHHHHhcCCCeEEEEEeCC
Confidence 6 34789999985332 1111 1 234699999999999999988754
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.17 E-value=6.9e-11 Score=123.19 Aligned_cols=112 Identities=17% Similarity=0.325 Sum_probs=88.2
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHc-----C-CC-ccEEEEcCcccccc-----
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLH-----Q-VN-SVIRTIHADLRTFA----- 400 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~-----g-~~-~~i~~~~~D~~~~~----- 400 (528)
+.++.+|||+|||+|..+..+++..++.++|+++|+|+.+++.++++++.+ | .. .+++++++|+.++.
T Consensus 81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~ 160 (383)
T 4fsd_A 81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPE 160 (383)
T ss_dssp GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSC
T ss_pred CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccC
Confidence 457889999999999999999998766789999999999999999998876 4 31 35999999998762
Q ss_pred ccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcC
Q 009708 401 DNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466 (528)
Q Consensus 401 ~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTc 466 (528)
+...++||+|+++... ...++ ...+|+++.++|||||+|++++.
T Consensus 161 ~~~~~~fD~V~~~~~l------~~~~d----------------~~~~l~~~~r~LkpgG~l~i~~~ 204 (383)
T 4fsd_A 161 GVPDSSVDIVISNCVC------NLSTN----------------KLALFKEIHRVLRDGGELYFSDV 204 (383)
T ss_dssp CCCTTCEEEEEEESCG------GGCSC----------------HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCCCCEEEEEEccch------hcCCC----------------HHHHHHHHHHHcCCCCEEEEEEe
Confidence 2224689999986433 11111 13569999999999999998753
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.16 E-value=7.3e-10 Score=102.59 Aligned_cols=135 Identities=14% Similarity=0.061 Sum_probs=95.1
Q ss_pred HHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCC
Q 009708 325 GLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 404 (528)
Q Consensus 325 ~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~ 404 (528)
.++..+ +.++.+|||+|||+|..+..++.. ..+++++|+++.+++.+++++. + ++++++|+..+.. ..
T Consensus 38 ~~l~~~--~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~~D~~~~~~~~a~~~~~-----~-~~~~~~d~~~~~~-~~ 105 (195)
T 3cgg_A 38 RLIDAM--APRGAKILDAGCGQGRIGGYLSKQ---GHDVLGTDLDPILIDYAKQDFP-----E-ARWVVGDLSVDQI-SE 105 (195)
T ss_dssp HHHHHH--SCTTCEEEEETCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHCT-----T-SEEEECCTTTSCC-CC
T ss_pred HHHHHh--ccCCCeEEEECCCCCHHHHHHHHC---CCcEEEEcCCHHHHHHHHHhCC-----C-CcEEEcccccCCC-CC
Confidence 344444 357889999999999999999886 4699999999999999988752 2 6789999987542 24
Q ss_pred CCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHHHhhC
Q 009708 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRH 484 (528)
Q Consensus 405 ~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~l~~~ 484 (528)
++||+|++++++. .. ....+ ...+|+.+.++|+|||++++++..... -..+.+...+.+.
T Consensus 106 ~~~D~i~~~~~~~-----~~-------~~~~~-------~~~~l~~~~~~l~~~G~l~~~~~~~~~-~~~~~~~~~l~~~ 165 (195)
T 3cgg_A 106 TDFDLIVSAGNVM-----GF-------LAEDG-------REPALANIHRALGADGRAVIGFGAGRG-WVFGDFLEVAERV 165 (195)
T ss_dssp CCEEEEEECCCCG-----GG-------SCHHH-------HHHHHHHHHHHEEEEEEEEEEEETTSS-CCHHHHHHHHHHH
T ss_pred CceeEEEECCcHH-----hh-------cChHH-------HHHHHHHHHHHhCCCCEEEEEeCCCCC-cCHHHHHHHHHHc
Confidence 6899999976551 11 11122 245699999999999999987654332 1233455555543
Q ss_pred CCceEecC
Q 009708 485 PEFSIDPA 492 (528)
Q Consensus 485 ~~~~~~~~ 492 (528)
+|++...
T Consensus 166 -Gf~~~~~ 172 (195)
T 3cgg_A 166 -GLELENA 172 (195)
T ss_dssp -TEEEEEE
T ss_pred -CCEEeee
Confidence 5666543
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.16 E-value=7e-11 Score=118.44 Aligned_cols=116 Identities=16% Similarity=0.199 Sum_probs=83.7
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCC----------------------------
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN---------------------------- 386 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~---------------------------- 386 (528)
++.+|||+|||+|..+..++..++ ..+|+|+|+|+.+++.++++++..+..
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~-~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWG-PSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRS 124 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTC-CSEEEEEESCHHHHHHHHHTC----------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcC-CCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccc
Confidence 578999999999999999999864 469999999999999999998766532
Q ss_pred -----------------------------ccEEEEcCccccccc----cCCCCCCEEEEcCCCCCCccccCCchhhccCC
Q 009708 387 -----------------------------SVIRTIHADLRTFAD----NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRR 433 (528)
Q Consensus 387 -----------------------------~~i~~~~~D~~~~~~----~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~ 433 (528)
++++++++|+..... ...+.||+|++.... .|
T Consensus 125 ~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl------------~~--- 189 (292)
T 3g07_A 125 CFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLT------------KW--- 189 (292)
T ss_dssp -----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCH------------HH---
T ss_pred cccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHH------------HH---
Confidence 469999999875431 124789999973211 11
Q ss_pred HHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 434 LEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 434 ~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
-.+..-.....++++.+.++|||||+|++.+..
T Consensus 190 -ihl~~~~~~~~~~l~~~~~~LkpGG~lil~~~~ 222 (292)
T 3g07_A 190 -VHLNWGDEGLKRMFRRIYRHLRPGGILVLEPQP 222 (292)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCC
T ss_pred -hhhcCCHHHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 011112224466799999999999999987554
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.16 E-value=3e-10 Score=119.71 Aligned_cols=115 Identities=14% Similarity=0.142 Sum_probs=86.1
Q ss_pred HHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHH-------HHHHHHcCCC-ccEEEEcCcccc
Q 009708 327 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRIL-------NETAKLHQVN-SVIRTIHADLRT 398 (528)
Q Consensus 327 ~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~-------~~n~~~~g~~-~~i~~~~~D~~~ 398 (528)
+...+.+.+|++|||+|||+|..++.+|...+ ..+|+|+|+++.+++.+ ++|++..|+. .+++++++|...
T Consensus 234 ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~g-~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~ 312 (433)
T 1u2z_A 234 VYQQCQLKKGDTFMDLGSGVGNCVVQAALECG-CALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFV 312 (433)
T ss_dssp HHHHTTCCTTCEEEEESCTTSHHHHHHHHHHC-CSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCST
T ss_pred HHHhcCCCCCCEEEEeCCCcCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCccc
Confidence 44566788899999999999999999998753 46899999999999988 9999999943 348998876542
Q ss_pred cc-c--cCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 399 FA-D--NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 399 ~~-~--~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
.. . .....||+|+++..+.+ .++ ...|..+.+.|||||+||...
T Consensus 313 ~~~~~~~~~~~FDvIvvn~~l~~----------------~d~-------~~~L~el~r~LKpGG~lVi~d 359 (433)
T 1u2z_A 313 DNNRVAELIPQCDVILVNNFLFD----------------EDL-------NKKVEKILQTAKVGCKIISLK 359 (433)
T ss_dssp TCHHHHHHGGGCSEEEECCTTCC----------------HHH-------HHHHHHHHTTCCTTCEEEESS
T ss_pred cccccccccCCCCEEEEeCcccc----------------ccH-------HHHHHHHHHhCCCCeEEEEee
Confidence 10 0 11257999998644311 122 234788899999999999653
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.16 E-value=6.2e-11 Score=111.97 Aligned_cols=122 Identities=17% Similarity=0.175 Sum_probs=88.7
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEc
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLD 413 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D 413 (528)
.++.+|||+|||+|..+..+++. + ..+|+++|+++.+++.+++++.. .. +++++++|+..+.. ..++||+|+++
T Consensus 41 ~~~~~vLdiGcG~G~~~~~l~~~-~-~~~v~~~D~s~~~~~~a~~~~~~--~~-~i~~~~~d~~~~~~-~~~~fD~v~~~ 114 (215)
T 2pxx_A 41 RPEDRILVLGCGNSALSYELFLG-G-FPNVTSVDYSSVVVAAMQACYAH--VP-QLRWETMDVRKLDF-PSASFDVVLEK 114 (215)
T ss_dssp CTTCCEEEETCTTCSHHHHHHHT-T-CCCEEEEESCHHHHHHHHHHTTT--CT-TCEEEECCTTSCCS-CSSCEEEEEEE
T ss_pred CCCCeEEEECCCCcHHHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhccc--CC-CcEEEEcchhcCCC-CCCcccEEEEC
Confidence 56889999999999999999886 2 23899999999999999998764 23 48899999987632 24689999987
Q ss_pred CCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCC
Q 009708 414 APCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 468 (528)
Q Consensus 414 ~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~ 468 (528)
.+... +.......|....... .....+++.+.++|||||++++.+++.
T Consensus 115 ~~~~~---~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~LkpgG~li~~~~~~ 162 (215)
T 2pxx_A 115 GTLDA---LLAGERDPWTVSSEGV----HTVDQVLSEVSRVLVPGGRFISMTSAA 162 (215)
T ss_dssp SHHHH---HTTTCSCTTSCCHHHH----HHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred cchhh---hccccccccccccchh----HHHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence 66421 1101112343332322 233567999999999999999887653
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=5.5e-11 Score=119.79 Aligned_cols=90 Identities=22% Similarity=0.310 Sum_probs=76.6
Q ss_pred HHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC--
Q 009708 326 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS-- 403 (528)
Q Consensus 326 l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~-- 403 (528)
.+...+.+.+|.+|||+|||+|+.+..+++.++ .++|+|+|+|+.+++.+++|++.+| . +++++++|+.++....
T Consensus 17 e~l~~L~~~~g~~vLD~g~G~G~~s~~la~~~~-~~~VigvD~d~~al~~A~~~~~~~g-~-~v~~v~~d~~~l~~~l~~ 93 (301)
T 1m6y_A 17 EVIEFLKPEDEKIILDCTVGEGGHSRAILEHCP-GCRIIGIDVDSEVLRIAEEKLKEFS-D-RVSLFKVSYREADFLLKT 93 (301)
T ss_dssp HHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHTGGGT-T-TEEEEECCGGGHHHHHHH
T ss_pred HHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcC-C-cEEEEECCHHHHHHHHHh
Confidence 455677888899999999999999999999864 6899999999999999999999888 4 5999999998764211
Q ss_pred --CCCCCEEEEcCCCCC
Q 009708 404 --TVKCDKVLLDAPCSG 418 (528)
Q Consensus 404 --~~~fD~Vl~D~Pcsg 418 (528)
..+||.|++|+|||+
T Consensus 94 ~g~~~~D~Vl~D~gvSs 110 (301)
T 1m6y_A 94 LGIEKVDGILMDLGVST 110 (301)
T ss_dssp TTCSCEEEEEEECSCCH
T ss_pred cCCCCCCEEEEcCccch
Confidence 147999999999873
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.15 E-value=2.3e-10 Score=111.30 Aligned_cols=108 Identities=22% Similarity=0.259 Sum_probs=84.0
Q ss_pred CCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEE
Q 009708 332 DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVL 411 (528)
Q Consensus 332 ~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl 411 (528)
...++.+|||+|||+|..+..+++. +.+|+|+|+|+.+++.+++++...+.. ++++++|+..+.. ..+||+|+
T Consensus 38 ~~~~~~~vLDlGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~--v~~~~~d~~~~~~--~~~fD~v~ 110 (252)
T 1wzn_A 38 AKREVRRVLDLACGTGIPTLELAER---GYEVVGLDLHEEMLRVARRKAKERNLK--IEFLQGDVLEIAF--KNEFDAVT 110 (252)
T ss_dssp CSSCCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCC--CEEEESCGGGCCC--CSCEEEEE
T ss_pred cccCCCEEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHhcCCc--eEEEECChhhccc--CCCccEEE
Confidence 3456789999999999999999885 469999999999999999999988763 8899999988653 36799999
Q ss_pred EcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 412 LDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 412 ~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
+.... ... ....+ ...+++.+.++|||||.+++..
T Consensus 111 ~~~~~--~~~----------~~~~~-------~~~~l~~~~~~L~pgG~li~~~ 145 (252)
T 1wzn_A 111 MFFST--IMY----------FDEED-------LRKLFSKVAEALKPGGVFITDF 145 (252)
T ss_dssp ECSSG--GGG----------SCHHH-------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred EcCCc--hhc----------CCHHH-------HHHHHHHHHHHcCCCeEEEEec
Confidence 63211 011 11122 3456999999999999998754
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.2e-10 Score=111.66 Aligned_cols=112 Identities=19% Similarity=0.210 Sum_probs=87.6
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCC----ccEEEEcCccccccccCCCCCCE
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN----SVIRTIHADLRTFADNSTVKCDK 409 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~----~~i~~~~~D~~~~~~~~~~~fD~ 409 (528)
.++.+|||+|||+|..+..++.. ..+|+++|+++.+++.+++++...++. .+++++++|+..+.. ..++||+
T Consensus 29 ~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~ 104 (235)
T 3sm3_A 29 QEDDEILDIGCGSGKISLELASK---GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSF-HDSSFDF 104 (235)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCS-CTTCEEE
T ss_pred CCCCeEEEECCCCCHHHHHHHhC---CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCC-CCCceeE
Confidence 46889999999999999999986 469999999999999999999888773 248899999987653 2478999
Q ss_pred EEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCC
Q 009708 410 VLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 468 (528)
Q Consensus 410 Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~ 468 (528)
|++.... ..-+ ++.. ...+|+.+.++|||||+|+++++..
T Consensus 105 v~~~~~l------~~~~------~~~~-------~~~~l~~~~~~L~pgG~l~~~~~~~ 144 (235)
T 3sm3_A 105 AVMQAFL------TSVP------DPKE-------RSRIIKEVFRVLKPGAYLYLVEFGQ 144 (235)
T ss_dssp EEEESCG------GGCC------CHHH-------HHHHHHHHHHHEEEEEEEEEEEEBC
T ss_pred EEEcchh------hcCC------CHHH-------HHHHHHHHHHHcCCCeEEEEEECCc
Confidence 9986333 1111 1222 2356999999999999999887654
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.14 E-value=3.5e-11 Score=122.87 Aligned_cols=113 Identities=19% Similarity=0.245 Sum_probs=88.0
Q ss_pred CCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEE
Q 009708 332 DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVL 411 (528)
Q Consensus 332 ~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl 411 (528)
...++.+|||+|||+|..+..+++. +..+|+|+|++ .+++.++++++.+|+.++++++++|+.++.. ..++||+|+
T Consensus 35 ~~~~~~~VLDiGcGtG~ls~~la~~--g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~D~Iv 110 (328)
T 1g6q_1 35 DLFKDKIVLDVGCGTGILSMFAAKH--GAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVHL-PFPKVDIII 110 (328)
T ss_dssp HHHTTCEEEEETCTTSHHHHHHHHT--CCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSCC-SSSCEEEEE
T ss_pred hhcCCCEEEEecCccHHHHHHHHHC--CCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhccC-CCCcccEEE
Confidence 3456789999999999999998875 35699999999 5999999999999998889999999987642 236899999
Q ss_pred EcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 412 LDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 412 ~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
++++..... .. ..+ ..++..+.++|||||+++..+++
T Consensus 111 s~~~~~~l~---~~---------~~~-------~~~l~~~~~~LkpgG~li~~~~~ 147 (328)
T 1g6q_1 111 SEWMGYFLL---YE---------SMM-------DTVLYARDHYLVEGGLIFPDKCS 147 (328)
T ss_dssp ECCCBTTBS---TT---------CCH-------HHHHHHHHHHEEEEEEEESCEEE
T ss_pred EeCchhhcc---cH---------HHH-------HHHHHHHHhhcCCCeEEEEeece
Confidence 987753211 00 111 23578888999999999855544
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=9.1e-11 Score=118.50 Aligned_cols=131 Identities=14% Similarity=0.137 Sum_probs=92.0
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHc---CCCccEEEEcCcccccccc-CCCCCCE
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLH---QVNSVIRTIHADLRTFADN-STVKCDK 409 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~---g~~~~i~~~~~D~~~~~~~-~~~~fD~ 409 (528)
.++.+|||+|||+|+.+..+++. .+..+|+++|+|+.+++.+++++... ....+++++++|+..+... ..++||+
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~-~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDv 172 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRH-GTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDV 172 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTC-TTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHhC-CCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeE
Confidence 45679999999999999999875 34579999999999999999987431 2234599999999887643 3478999
Q ss_pred EEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCC-CchhhHHHHHHHHhh
Q 009708 410 VLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI-DPEENEERVEAFLLR 483 (528)
Q Consensus 410 Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~-~~~Ene~~v~~~l~~ 483 (528)
|++|++... + |. ..+ .+.++++.+.++|||||+|++.+.+. ...+....+...+++
T Consensus 173 Ii~d~~~~~-~-----~~-------~~l-----~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~ 229 (304)
T 3bwc_A 173 VIIDTTDPA-G-----PA-------SKL-----FGEAFYKDVLRILKPDGICCNQGESIWLDLELIEKMSRFIRE 229 (304)
T ss_dssp EEEECC---------------------------CCHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHH
T ss_pred EEECCCCcc-c-----cc-------hhh-----hHHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHh
Confidence 999977521 1 00 000 12467899999999999999865542 222333344455554
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=4.9e-11 Score=119.64 Aligned_cols=119 Identities=16% Similarity=0.250 Sum_probs=89.6
Q ss_pred HHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCC--ccEEEEcCccccccccC
Q 009708 326 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN--SVIRTIHADLRTFADNS 403 (528)
Q Consensus 326 l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~--~~i~~~~~D~~~~~~~~ 403 (528)
.+...+.+.++ +|||+|||+|..+..+++. +.+|+|+|+|+.+++.+++++...++. .+++++++|+..++.
T Consensus 74 ~~~~~~~~~~~-~vLDlGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~-- 147 (299)
T 3g2m_A 74 EFATRTGPVSG-PVLELAAGMGRLTFPFLDL---GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL-- 147 (299)
T ss_dssp HHHHHHCCCCS-CEEEETCTTTTTHHHHHTT---TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC--
T ss_pred HHHHhhCCCCC-cEEEEeccCCHHHHHHHHc---CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc--
Confidence 34444555444 9999999999999999875 468999999999999999999987742 348999999998754
Q ss_pred CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCC
Q 009708 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSID 469 (528)
Q Consensus 404 ~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~ 469 (528)
.++||.|++.. +++.. .+..+ +..+|+++.++|||||+|++++....
T Consensus 148 ~~~fD~v~~~~-----~~~~~-------~~~~~-------~~~~l~~~~~~L~pgG~l~~~~~~~~ 194 (299)
T 3g2m_A 148 DKRFGTVVISS-----GSINE-------LDEAD-------RRGLYASVREHLEPGGKFLLSLAMSE 194 (299)
T ss_dssp SCCEEEEEECH-----HHHTT-------SCHHH-------HHHHHHHHHHHEEEEEEEEEEEECCH
T ss_pred CCCcCEEEECC-----ccccc-------CCHHH-------HHHHHHHHHHHcCCCcEEEEEeecCc
Confidence 47899998621 11111 12222 34569999999999999998876643
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.13 E-value=4.2e-11 Score=114.22 Aligned_cols=114 Identities=15% Similarity=0.200 Sum_probs=82.9
Q ss_pred hcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHH----HHcCCCccEEEEcCccccccccCCC
Q 009708 330 VVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETA----KLHQVNSVIRTIHADLRTFADNSTV 405 (528)
Q Consensus 330 ~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~----~~~g~~~~i~~~~~D~~~~~~~~~~ 405 (528)
.+.+.++.+|||+|||+|..+..+++. .+..+|+|+|+|+.+++.+.+++ ...++++ ++++++|+.+++.. ..
T Consensus 22 ~l~~~~~~~vLDiGcG~G~~~~~la~~-~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~-v~~~~~d~~~l~~~-~~ 98 (218)
T 3mq2_A 22 QLRSQYDDVVLDVGTGDGKHPYKVARQ-NPSRLVVALDADKSRMEKISAKAAAKPAKGGLPN-LLYLWATAERLPPL-SG 98 (218)
T ss_dssp HHHTTSSEEEEEESCTTCHHHHHHHHH-CTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTT-EEEEECCSTTCCSC-CC
T ss_pred HhhccCCCEEEEecCCCCHHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCc-eEEEecchhhCCCC-CC
Confidence 345678899999999999999999997 34689999999999888644333 3456665 89999999886532 23
Q ss_pred CCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 406 ~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
. |.|++..+.. .........+..+++++.++|||||+++++
T Consensus 99 ~-d~v~~~~~~~-----------------~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 139 (218)
T 3mq2_A 99 V-GELHVLMPWG-----------------SLLRGVLGSSPEMLRGMAAVCRPGASFLVA 139 (218)
T ss_dssp E-EEEEEESCCH-----------------HHHHHHHTSSSHHHHHHHHTEEEEEEEEEE
T ss_pred C-CEEEEEccch-----------------hhhhhhhccHHHHHHHHHHHcCCCcEEEEE
Confidence 4 8777655431 111111222356799999999999999975
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=1.8e-10 Score=115.18 Aligned_cols=131 Identities=13% Similarity=0.177 Sum_probs=94.1
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcC--C-CccEEEEcCccccccccCCCCCCEE
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQ--V-NSVIRTIHADLRTFADNSTVKCDKV 410 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g--~-~~~i~~~~~D~~~~~~~~~~~fD~V 410 (528)
.++.+|||+|||+|+.+..+++. .+..+|+++|+++.+++.+++++...+ + ..+++++++|+..+.....++||+|
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~-~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKY-KSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVI 155 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTC-TTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEE
T ss_pred CCCCeEEEEeCCcCHHHHHHHHc-CCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEE
Confidence 35679999999999999999875 345799999999999999999886543 2 2359999999988654335789999
Q ss_pred EEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCC-CchhhHHHHHHHHhh
Q 009708 411 LLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI-DPEENEERVEAFLLR 483 (528)
Q Consensus 411 l~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~-~~~Ene~~v~~~l~~ 483 (528)
++|++.. .|. . ..+ ...++++.+.+.|+|||+++..+++. ...+....+...+++
T Consensus 156 i~d~~~~-~~~-----~-------~~l-----~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~ 211 (283)
T 2i7c_A 156 IVDSSDP-IGP-----A-------ETL-----FNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKK 211 (283)
T ss_dssp EEECCCT-TTG-----G-------GGG-----SSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHT
T ss_pred EEcCCCC-CCc-----c-------hhh-----hHHHHHHHHHHhcCCCcEEEEECCCcccCHHHHHHHHHHHHH
Confidence 9997652 111 0 000 11456899999999999999887763 232322333344444
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.12 E-value=5.1e-11 Score=123.45 Aligned_cols=111 Identities=18% Similarity=0.343 Sum_probs=86.3
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEc
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLD 413 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D 413 (528)
.+|.+|||+|||+|..++.+|+. +..+|+|||.|+ +++.++++++.+|+.++|+++++|+.++.. +++||+|+++
T Consensus 82 ~~~k~VLDvG~GtGiLs~~Aa~a--GA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~l--pe~~DvivsE 156 (376)
T 4hc4_A 82 LRGKTVLDVGAGTGILSIFCAQA--GARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVEL--PEQVDAIVSE 156 (376)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHT--TCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCCC--SSCEEEEECC
T ss_pred cCCCEEEEeCCCccHHHHHHHHh--CCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeecC--CccccEEEee
Confidence 36889999999999999888874 456999999996 789999999999999999999999988643 4789999986
Q ss_pred CCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCC
Q 009708 414 APCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 468 (528)
Q Consensus 414 ~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~ 468 (528)
.-- .+.+.- ..+ ..++....++|||||.++-+.|++
T Consensus 157 ~~~--~~l~~e----------~~l-------~~~l~a~~r~Lkp~G~~iP~~atl 192 (376)
T 4hc4_A 157 WMG--YGLLHE----------SML-------SSVLHARTKWLKEGGLLLPASAEL 192 (376)
T ss_dssp CCB--TTBTTT----------CSH-------HHHHHHHHHHEEEEEEEESCEEEE
T ss_pred ccc--cccccc----------chh-------hhHHHHHHhhCCCCceECCccceE
Confidence 432 222111 112 234777778999999998666653
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.12 E-value=1.7e-10 Score=117.99 Aligned_cols=117 Identities=15% Similarity=0.204 Sum_probs=88.3
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHc--CC-CccEEEEcCccccccccC-CCCCC
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLH--QV-NSVIRTIHADLRTFADNS-TVKCD 408 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~--g~-~~~i~~~~~D~~~~~~~~-~~~fD 408 (528)
...+.+|||+|||+|..+..+++. .+..+|+++|+|+.+++.+++++... |+ ..+++++++|+..+.... .++||
T Consensus 118 ~~~~~~VLdIG~G~G~~a~~la~~-~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fD 196 (334)
T 1xj5_A 118 IPNPKKVLVIGGGDGGVLREVARH-ASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYD 196 (334)
T ss_dssp SSCCCEEEEETCSSSHHHHHHTTC-TTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEE
T ss_pred CCCCCEEEEECCCccHHHHHHHHc-CCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCcc
Confidence 345679999999999999999875 34579999999999999999998764 44 235999999998764322 36899
Q ss_pred EEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCC
Q 009708 409 KVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 468 (528)
Q Consensus 409 ~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~ 468 (528)
+|++|++... +. ++ . -.+.++++.+.++|+|||+|+..+.+.
T Consensus 197 lIi~d~~~p~-~~----~~--------~-----l~~~~~l~~~~~~LkpgG~lv~~~~~~ 238 (334)
T 1xj5_A 197 AVIVDSSDPI-GP----AK--------E-----LFEKPFFQSVARALRPGGVVCTQAESL 238 (334)
T ss_dssp EEEECCCCTT-SG----GG--------G-----GGSHHHHHHHHHHEEEEEEEEEECCCT
T ss_pred EEEECCCCcc-Cc----ch--------h-----hhHHHHHHHHHHhcCCCcEEEEecCCc
Confidence 9999976311 10 00 0 012457899999999999999875443
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.4e-10 Score=109.46 Aligned_cols=111 Identities=17% Similarity=0.215 Sum_probs=83.7
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEE
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 412 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~ 412 (528)
..++.+|||+|||+|..++.++.. .+.+|+++|+|+.+++.+++++...+. +++++++|+..++. ..++||+|++
T Consensus 21 ~~~~~~vLDiGcG~G~~~~~~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~-~~~~fD~v~~ 95 (209)
T 2p8j_A 21 SNLDKTVLDCGAGGDLPPLSIFVE--DGYKTYGIEISDLQLKKAENFSRENNF--KLNISKGDIRKLPF-KDESMSFVYS 95 (209)
T ss_dssp SSSCSEEEEESCCSSSCTHHHHHH--TTCEEEEEECCHHHHHHHHHHHHHHTC--CCCEEECCTTSCCS-CTTCEEEEEE
T ss_pred cCCCCEEEEECCCCCHHHHHHHHh--CCCEEEEEECCHHHHHHHHHHHHhcCC--ceEEEECchhhCCC-CCCceeEEEE
Confidence 456789999999999986555443 246999999999999999999988774 37889999987642 2468999997
Q ss_pred cCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCC
Q 009708 413 DAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 468 (528)
Q Consensus 413 D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~ 468 (528)
.... .. ....+ ...+++.+.++|||||++++++++.
T Consensus 96 ~~~l------~~-------~~~~~-------~~~~l~~~~~~LkpgG~l~~~~~~~ 131 (209)
T 2p8j_A 96 YGTI------FH-------MRKND-------VKEAIDEIKRVLKPGGLACINFLTT 131 (209)
T ss_dssp CSCG------GG-------SCHHH-------HHHHHHHHHHHEEEEEEEEEEEEET
T ss_pred cChH------Hh-------CCHHH-------HHHHHHHHHHHcCCCcEEEEEEecc
Confidence 4322 11 11122 3456999999999999999888764
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=1.6e-10 Score=117.32 Aligned_cols=117 Identities=13% Similarity=0.155 Sum_probs=87.0
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHc--C-C-CccEEEEcCccccccccCCCCCCEE
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLH--Q-V-NSVIRTIHADLRTFADNSTVKCDKV 410 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~--g-~-~~~i~~~~~D~~~~~~~~~~~fD~V 410 (528)
.+.+|||+|||+|+.+..+++. .+..+|+++|+++.+++.+++++... + + ..+++++++|+..+.....++||+|
T Consensus 77 ~~~~VLdiG~G~G~~~~~l~~~-~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (314)
T 1uir_A 77 EPKRVLIVGGGEGATLREVLKH-PTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (314)
T ss_dssp CCCEEEEEECTTSHHHHHHTTS-TTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCCeEEEEcCCcCHHHHHHHhc-CCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence 4579999999999999999875 34579999999999999999998752 2 2 3459999999988654345789999
Q ss_pred EEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 411 LLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 411 l~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
++|++... +. ..|. ..+ ...++++.+.++|||||+|+..+.+
T Consensus 156 i~d~~~~~-~~--~~~~-------~~l-----~~~~~l~~~~~~LkpgG~lv~~~~~ 197 (314)
T 1uir_A 156 IIDLTDPV-GE--DNPA-------RLL-----YTVEFYRLVKAHLNPGGVMGMQTGM 197 (314)
T ss_dssp EEECCCCB-ST--TCGG-------GGG-----SSHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred EECCCCcc-cc--cCcc-------hhc-----cHHHHHHHHHHhcCCCcEEEEEccC
Confidence 99977521 00 0010 000 0245689999999999999977544
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.11 E-value=2.3e-10 Score=110.32 Aligned_cols=107 Identities=17% Similarity=0.157 Sum_probs=83.5
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDA 414 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~ 414 (528)
++.+|||+|||+|..+..+++. ..+++++|+++.+++.+++++...+. +++++++|+..+... ++||+|++..
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~---~~~~~~~D~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~--~~fD~v~~~~ 109 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPK---FKNTWAVDLSQEMLSEAENKFRSQGL--KPRLACQDISNLNIN--RKFDLITCCL 109 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGG---SSEEEEECSCHHHHHHHHHHHHHTTC--CCEEECCCGGGCCCS--CCEEEEEECT
T ss_pred CCCeEEEeCCCCCHHHHHHHHC---CCcEEEEECCHHHHHHHHHHHhhcCC--CeEEEecccccCCcc--CCceEEEEcC
Confidence 6789999999999999999875 46899999999999999999998876 388999999886532 6899999743
Q ss_pred CCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcC
Q 009708 415 PCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466 (528)
Q Consensus 415 Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTc 466 (528)
- ++..- .+..+ ...+|+.+.++|||||++++++.
T Consensus 110 ~-----~l~~~------~~~~~-------~~~~l~~~~~~L~pgG~l~~~~~ 143 (246)
T 1y8c_A 110 D-----STNYI------IDSDD-------LKKYFKAVSNHLKEGGVFIFDIN 143 (246)
T ss_dssp T-----GGGGC------CSHHH-------HHHHHHHHHTTEEEEEEEEEEEE
T ss_pred c-----ccccc------CCHHH-------HHHHHHHHHHhcCCCcEEEEEec
Confidence 0 11111 11122 24569999999999999997543
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=3.1e-10 Score=126.99 Aligned_cols=127 Identities=17% Similarity=0.130 Sum_probs=93.3
Q ss_pred HHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcC-----------------------------------------CCcE
Q 009708 324 AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLS-----------------------------------------GQGL 362 (528)
Q Consensus 324 s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~-----------------------------------------~~~~ 362 (528)
+..++.+....++..|||.|||+|++.+.+|.... ...+
T Consensus 179 Aa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~ 258 (703)
T 3v97_A 179 AAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSH 258 (703)
T ss_dssp HHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCcc
Confidence 34455566777889999999999999998887531 1257
Q ss_pred EEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC-CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHH
Q 009708 363 VYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS-TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELK 441 (528)
Q Consensus 363 v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~-~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~ 441 (528)
|+|+|+++.+++.++.|++++|+.+.+++.++|+.++.... .++||+|++|||+.. -+ . +...+ .
T Consensus 259 i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~-Rl-g---------~~~~l---~ 324 (703)
T 3v97_A 259 FYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGE-RL-D---------SEPAL---I 324 (703)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC--------------CCHHH---H
T ss_pred EEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccc-cc-c---------chhHH---H
Confidence 99999999999999999999999988999999999875332 237999999999931 10 0 11222 2
Q ss_pred HHHHHHHHHHhccCcCCCEEEEEc
Q 009708 442 ILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 442 ~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
.++.. +...++.+.|||.+++.|
T Consensus 325 ~ly~~-l~~~lk~~~~g~~~~ilt 347 (703)
T 3v97_A 325 ALHSL-LGRIMKNQFGGWNLSLFS 347 (703)
T ss_dssp HHHHH-HHHHHHHHCTTCEEEEEE
T ss_pred HHHHH-HHHHHHhhCCCCeEEEEe
Confidence 33333 455556667899888664
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.11 E-value=2e-10 Score=112.01 Aligned_cols=111 Identities=16% Similarity=0.198 Sum_probs=85.0
Q ss_pred HHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCC
Q 009708 327 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVK 406 (528)
Q Consensus 327 ~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~ 406 (528)
+...+...++.+|||+|||+|..+..+++. +..+|+++|+|+.+++.+++++. ..+++++++|+..++. ..++
T Consensus 36 l~~~~~~~~~~~vLD~GcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~-~~~~ 108 (253)
T 3g5l_A 36 LKKMLPDFNQKTVLDLGCGFGWHCIYAAEH--GAKKVLGIDLSERMLTEAKRKTT----SPVVCYEQKAIEDIAI-EPDA 108 (253)
T ss_dssp HHTTCCCCTTCEEEEETCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHCC----CTTEEEEECCGGGCCC-CTTC
T ss_pred HHHhhhccCCCEEEEECCCCCHHHHHHHHc--CCCEEEEEECCHHHHHHHHHhhc----cCCeEEEEcchhhCCC-CCCC
Confidence 344556667889999999999999999986 23399999999999999988765 2348999999987653 2478
Q ss_pred CCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcC
Q 009708 407 CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466 (528)
Q Consensus 407 fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTc 466 (528)
||+|++.... ..-++ ...+|+.+.++|||||+|++++.
T Consensus 109 fD~v~~~~~l------~~~~~----------------~~~~l~~~~~~LkpgG~l~~~~~ 146 (253)
T 3g5l_A 109 YNVVLSSLAL------HYIAS----------------FDDICKKVYINLKSSGSFIFSVE 146 (253)
T ss_dssp EEEEEEESCG------GGCSC----------------HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eEEEEEchhh------hhhhh----------------HHHHHHHHHHHcCCCcEEEEEeC
Confidence 9999985322 11111 23469999999999999998754
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.11 E-value=1.9e-10 Score=116.06 Aligned_cols=112 Identities=12% Similarity=0.072 Sum_probs=77.4
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCc-----cEEEEcCcc------ccccc-c
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS-----VIRTIHADL------RTFAD-N 402 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~-----~i~~~~~D~------~~~~~-~ 402 (528)
+|.+|||+|||+|+.+..++.. +.++|+|+|+|+.+++.|++++...+... .+++.+.|+ .++.. .
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~--~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~ 125 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYG--EIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVF 125 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTC
T ss_pred CCCeEEEEecCCcHhHHHHHhc--CCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccc
Confidence 5789999999999876665553 34699999999999999999988776531 156667766 22221 1
Q ss_pred CCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 403 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 403 ~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
..++||+|+|-- ++ .|..+..+. ..+|+++.++|||||+++.+|+.
T Consensus 126 ~~~~FD~V~~~~------~l------hy~~~~~~~-------~~~l~~~~r~LkpGG~~i~~~~~ 171 (302)
T 2vdw_A 126 YFGKFNIIDWQF------AI------HYSFHPRHY-------ATVMNNLSELTASGGKVLITTMD 171 (302)
T ss_dssp CSSCEEEEEEES------CG------GGTCSTTTH-------HHHHHHHHHHEEEEEEEEEEEEC
T ss_pred cCCCeeEEEECc------hH------HHhCCHHHH-------HHHHHHHHHHcCCCCEEEEEeCC
Confidence 236899998631 11 111111121 35699999999999999988763
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.11 E-value=5.7e-11 Score=110.81 Aligned_cols=109 Identities=17% Similarity=0.087 Sum_probs=82.2
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEc
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLD 413 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D 413 (528)
.+.++|||+|||+|..++.++... +..+++|+|+|+.+++.+++|+.++|+.+++++ .|..... .++.||+|++-
T Consensus 48 ~~~~~VLDlGCG~GplAl~l~~~~-p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~--~~~~~DvVLa~ 122 (200)
T 3fzg_A 48 KHVSSILDFGCGFNPLALYQWNEN-EKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDV--YKGTYDVVFLL 122 (200)
T ss_dssp CCCSEEEEETCTTHHHHHHHHCSS-CCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHH--TTSEEEEEEEE
T ss_pred CCCCeEEEecCCCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccC--CCCCcChhhHh
Confidence 346699999999999999998763 456999999999999999999999999865666 5554432 34679999962
Q ss_pred CCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEE-EEcCCCC
Q 009708 414 APCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV-YSTCSID 469 (528)
Q Consensus 414 ~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lv-ysTcs~~ 469 (528)
+-+.-+ ..++..+..+++.|+|||.+| +-|-|+.
T Consensus 123 ---------------------k~LHlL-~~~~~al~~v~~~L~pggvfISfptksl~ 157 (200)
T 3fzg_A 123 ---------------------KMLPVL-KQQDVNILDFLQLFHTQNFVISFPIKSLS 157 (200)
T ss_dssp ---------------------TCHHHH-HHTTCCHHHHHHTCEEEEEEEEEECCCCC
T ss_pred ---------------------hHHHhh-hhhHHHHHHHHHHhCCCCEEEEeChHHhc
Confidence 122233 445556668999999999888 4445544
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.11 E-value=2.5e-10 Score=110.14 Aligned_cols=108 Identities=24% Similarity=0.323 Sum_probs=82.9
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEc
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLD 413 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D 413 (528)
.++.+|||+|||+|..+..+++. .+|+++|+|+.+++.+++++...+. +++++++|+..+.. .++||+|++.
T Consensus 32 ~~~~~vLdiG~G~G~~~~~l~~~----~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~--~~~fD~v~~~ 103 (243)
T 3d2l_A 32 EPGKRIADIGCGTGTATLLLADH----YEVTGVDLSEEMLEIAQEKAMETNR--HVDFWVQDMRELEL--PEPVDAITIL 103 (243)
T ss_dssp CTTCEEEEESCTTCHHHHHHTTT----SEEEEEESCHHHHHHHHHHHHHTTC--CCEEEECCGGGCCC--SSCEEEEEEC
T ss_pred CCCCeEEEecCCCCHHHHHHhhC----CeEEEEECCHHHHHHHHHhhhhcCC--ceEEEEcChhhcCC--CCCcCEEEEe
Confidence 35689999999999999988764 6899999999999999999988773 37899999987653 3689999985
Q ss_pred CCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 414 APCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 414 ~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
..+ +.. ..+..+. ..+++.+.++|||||++++++.+
T Consensus 104 ~~~-----~~~------~~~~~~~-------~~~l~~~~~~L~pgG~l~~~~~~ 139 (243)
T 3d2l_A 104 CDS-----LNY------LQTEADV-------KQTFDSAARLLTDGGKLLFDVHS 139 (243)
T ss_dssp TTG-----GGG------CCSHHHH-------HHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCc-----hhh------cCCHHHH-------HHHHHHHHHhcCCCeEEEEEcCC
Confidence 322 111 1122222 34689999999999999976543
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.9e-10 Score=104.93 Aligned_cols=125 Identities=16% Similarity=0.240 Sum_probs=89.4
Q ss_pred hcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCE
Q 009708 330 VVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDK 409 (528)
Q Consensus 330 ~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~ 409 (528)
.+.+.++.+|||+|||+|..+..+++.. .+|+++|+++.+++.++++ .+ +++++++| ..+ ..++||+
T Consensus 12 ~~~~~~~~~vLDiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~-----~~-~v~~~~~d-~~~---~~~~~D~ 78 (170)
T 3i9f_A 12 NIFEGKKGVIVDYGCGNGFYCKYLLEFA---TKLYCIDINVIALKEVKEK-----FD-SVITLSDP-KEI---PDNSVDF 78 (170)
T ss_dssp HHHSSCCEEEEEETCTTCTTHHHHHTTE---EEEEEECSCHHHHHHHHHH-----CT-TSEEESSG-GGS---CTTCEEE
T ss_pred hcCcCCCCeEEEECCCCCHHHHHHHhhc---CeEEEEeCCHHHHHHHHHh-----CC-CcEEEeCC-CCC---CCCceEE
Confidence 3456778899999999999999998763 4999999999999999888 33 48899999 222 2468999
Q ss_pred EEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchh---------hHHHHHHH
Q 009708 410 VLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEE---------NEERVEAF 480 (528)
Q Consensus 410 Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~E---------ne~~v~~~ 480 (528)
|++..... .-++ ...+++++.++|||||++++.+....... ..+.+..+
T Consensus 79 v~~~~~l~------~~~~----------------~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (170)
T 3i9f_A 79 ILFANSFH------DMDD----------------KQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGW 136 (170)
T ss_dssp EEEESCST------TCSC----------------HHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHH
T ss_pred EEEccchh------cccC----------------HHHHHHHHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHH
Confidence 99764431 1111 23568999999999999998876533211 13345555
Q ss_pred HhhCCCceEecC
Q 009708 481 LLRHPEFSIDPA 492 (528)
Q Consensus 481 l~~~~~~~~~~~ 492 (528)
++ +|++...
T Consensus 137 l~---Gf~~~~~ 145 (170)
T 3i9f_A 137 FS---NFVVEKR 145 (170)
T ss_dssp TT---TEEEEEE
T ss_pred Hh---CcEEEEc
Confidence 55 6766544
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.10 E-value=5.9e-10 Score=111.15 Aligned_cols=134 Identities=16% Similarity=0.165 Sum_probs=83.3
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcC-ChHHHHHHHHHH-----HHcCCC----ccEEEEcCcccc----
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDI-NKGRLRILNETA-----KLHQVN----SVIRTIHADLRT---- 398 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~-s~~~l~~~~~n~-----~~~g~~----~~i~~~~~D~~~---- 398 (528)
..+|.+|||+|||+|..++.++.. +.++|+++|+ ++.+++.+++|+ +.+|+. ++++++..|..+
T Consensus 77 ~~~~~~vLDlG~G~G~~~~~~a~~--~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 154 (281)
T 3bzb_A 77 LIAGKTVCELGAGAGLVSIVAFLA--GADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDS 154 (281)
T ss_dssp GTTTCEEEETTCTTSHHHHHHHHT--TCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHH
T ss_pred hcCCCeEEEecccccHHHHHHHHc--CCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHH
Confidence 356889999999999999988875 3459999999 899999999999 555654 347777554332
Q ss_pred cccc-CCCCCCEEEE-cCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCc---C--CCEEEEEcCCCCch
Q 009708 399 FADN-STVKCDKVLL-DAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVK---P--GGVLVYSTCSIDPE 471 (528)
Q Consensus 399 ~~~~-~~~~fD~Vl~-D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~Lk---p--GG~LvysTcs~~~~ 471 (528)
+... ...+||+|++ |+.+. ... ...+++.+.++|+ | ||+++++.+...+.
T Consensus 155 ~~~~~~~~~fD~Ii~~dvl~~----------------~~~-------~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~~~~ 211 (281)
T 3bzb_A 155 LQRCTGLQRFQVVLLADLLSF----------------HQA-------HDALLRSVKMLLALPANDPTAVALVTFTHHRPH 211 (281)
T ss_dssp HHHHHSCSSBSEEEEESCCSC----------------GGG-------HHHHHHHHHHHBCCTTTCTTCEEEEEECC----
T ss_pred HHhhccCCCCCEEEEeCcccC----------------hHH-------HHHHHHHHHHHhcccCCCCCCEEEEEEEeeecc
Confidence 2110 1367999986 65541 011 2346888899999 9 99876654433221
Q ss_pred --hhHHHHHHHHhhCCC-ceEecC
Q 009708 472 --ENEERVEAFLLRHPE-FSIDPA 492 (528)
Q Consensus 472 --Ene~~v~~~l~~~~~-~~~~~~ 492 (528)
+....+...+.++ + |++..+
T Consensus 212 ~~~~~~~~~~~l~~~-G~f~v~~~ 234 (281)
T 3bzb_A 212 LAERDLAFFRLVNAD-GALIAEPW 234 (281)
T ss_dssp ----CTHHHHHHHHS-TTEEEEEE
T ss_pred cchhHHHHHHHHHhc-CCEEEEEe
Confidence 1112233344444 5 766544
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.09 E-value=5.3e-10 Score=106.28 Aligned_cols=105 Identities=17% Similarity=0.106 Sum_probs=79.0
Q ss_pred hcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccc---cccCCCC
Q 009708 330 VVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF---ADNSTVK 406 (528)
Q Consensus 330 ~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~---~~~~~~~ 406 (528)
.+...++.+|||+|||+|..+..++.. +.+|+|+|+++.+++.++++ . .+.+++.|+.++ ......+
T Consensus 47 ~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~------~-~~~~~~~~~~~~~~~~~~~~~~ 116 (227)
T 3e8s_A 47 AILGRQPERVLDLGCGEGWLLRALADR---GIEAVGVDGDRTLVDAARAA------G-AGEVHLASYAQLAEAKVPVGKD 116 (227)
T ss_dssp HHHHTCCSEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHT------C-SSCEEECCHHHHHTTCSCCCCC
T ss_pred HhhcCCCCEEEEeCCCCCHHHHHHHHC---CCEEEEEcCCHHHHHHHHHh------c-ccccchhhHHhhcccccccCCC
Confidence 333445689999999999999999875 46999999999999999877 2 256778888776 2222456
Q ss_pred CCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 407 CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 407 fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
||+|++..... .++ ...+++.+.++|||||+|++++..
T Consensus 117 fD~v~~~~~l~-------~~~----------------~~~~l~~~~~~L~pgG~l~~~~~~ 154 (227)
T 3e8s_A 117 YDLICANFALL-------HQD----------------IIELLSAMRTLLVPGGALVIQTLH 154 (227)
T ss_dssp EEEEEEESCCC-------SSC----------------CHHHHHHHHHTEEEEEEEEEEECC
T ss_pred ccEEEECchhh-------hhh----------------HHHHHHHHHHHhCCCeEEEEEecC
Confidence 99999864431 111 124689999999999999988753
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.09 E-value=3.8e-10 Score=109.67 Aligned_cols=113 Identities=15% Similarity=0.108 Sum_probs=86.4
Q ss_pred HHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCC
Q 009708 328 VAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC 407 (528)
Q Consensus 328 ~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~f 407 (528)
...+...++.+|||+|||+|..+..++... ..+|+++|+++.+++.+++++... .+++++++|+..+.. ..++|
T Consensus 86 l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~-~~~~f 159 (254)
T 1xtp_A 86 IASLPGHGTSRALDCGAGIGRITKNLLTKL--YATTDLLEPVKHMLEEAKRELAGM---PVGKFILASMETATL-PPNTY 159 (254)
T ss_dssp HHTSTTCCCSEEEEETCTTTHHHHHTHHHH--CSEEEEEESCHHHHHHHHHHTTTS---SEEEEEESCGGGCCC-CSSCE
T ss_pred HHhhcccCCCEEEEECCCcCHHHHHHHHhh--cCEEEEEeCCHHHHHHHHHHhccC---CceEEEEccHHHCCC-CCCCe
Confidence 344556678899999999999999998863 468999999999999999987654 358999999987643 24689
Q ss_pred CEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcC
Q 009708 408 DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466 (528)
Q Consensus 408 D~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTc 466 (528)
|+|++... +..- ...+ ...+|+.+.++|||||+|++++.
T Consensus 160 D~v~~~~~------l~~~-------~~~~-------~~~~l~~~~~~LkpgG~l~i~~~ 198 (254)
T 1xtp_A 160 DLIVIQWT------AIYL-------TDAD-------FVKFFKHCQQALTPNGYIFFKEN 198 (254)
T ss_dssp EEEEEESC------GGGS-------CHHH-------HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEEEcch------hhhC-------CHHH-------HHHHHHHHHHhcCCCeEEEEEec
Confidence 99997432 1111 1122 34569999999999999998874
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.09 E-value=5.6e-10 Score=104.89 Aligned_cols=126 Identities=17% Similarity=0.119 Sum_probs=91.3
Q ss_pred CCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAP 415 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~P 415 (528)
+.+|||+|||+|..+..++.. +.+|+|+|+++.+++.++++ .. +++++++|+..++. ..++||+|++...
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~-----~~-~~~~~~~d~~~~~~-~~~~fD~v~~~~~ 111 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL---GHQIEGLEPATRLVELARQT-----HP-SVTFHHGTITDLSD-SPKRWAGLLAWYS 111 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT---TCCEEEECCCHHHHHHHHHH-----CT-TSEEECCCGGGGGG-SCCCEEEEEEESS
T ss_pred CCeEEEecCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHh-----CC-CCeEEeCccccccc-CCCCeEEEEehhh
Confidence 779999999999999999886 45899999999999999887 23 37899999988653 3478999998532
Q ss_pred CCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCc------------hhhHHHHHHHHhh
Q 009708 416 CSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDP------------EENEERVEAFLLR 483 (528)
Q Consensus 416 csg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~------------~Ene~~v~~~l~~ 483 (528)
. ..-+ .++ ...+|+.+.++|||||++++++..... .-..+.+..++.+
T Consensus 112 l------~~~~-------~~~-------~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 171 (203)
T 3h2b_A 112 L------IHMG-------PGE-------LPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALET 171 (203)
T ss_dssp S------TTCC-------TTT-------HHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHH
T ss_pred H------hcCC-------HHH-------HHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHH
Confidence 2 1111 112 234699999999999999988755332 1124455666666
Q ss_pred CCCceEecC
Q 009708 484 HPEFSIDPA 492 (528)
Q Consensus 484 ~~~~~~~~~ 492 (528)
. +|+++.+
T Consensus 172 ~-Gf~~~~~ 179 (203)
T 3h2b_A 172 A-GFQVTSS 179 (203)
T ss_dssp T-TEEEEEE
T ss_pred C-CCcEEEE
Confidence 4 5766544
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.09 E-value=2.4e-10 Score=110.75 Aligned_cols=132 Identities=16% Similarity=0.137 Sum_probs=94.7
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDA 414 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~ 414 (528)
++.+|||+|||+|..+..+++.. ..+|+++|+++.+++.+++++...+.. +++++++|+..+... .++||+|+++.
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~-~~~fD~v~~~~ 154 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPL--FREVDMVDITEDFLVQAKTYLGEEGKR-VRNYFCCGLQDFTPE-PDSYDVIWIQW 154 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTT--CSEEEEEESCHHHHHHHHHHTGGGGGG-EEEEEECCGGGCCCC-SSCEEEEEEES
T ss_pred CCCEEEEECCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHhhhcCCc-eEEEEEcChhhcCCC-CCCEEEEEEcc
Confidence 57899999999999999888753 469999999999999999998877533 488999998876532 35799999863
Q ss_pred CCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCc-----------hhhHHHHHHHHhh
Q 009708 415 PCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDP-----------EENEERVEAFLLR 483 (528)
Q Consensus 415 Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~-----------~Ene~~v~~~l~~ 483 (528)
. +..-+ ... ...+|+.+.++|||||+|++++..... ....+.+..++.+
T Consensus 155 ~------l~~~~-------~~~-------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 214 (241)
T 2ex4_A 155 V------IGHLT-------DQH-------LAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICS 214 (241)
T ss_dssp C------GGGSC-------HHH-------HHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHH
T ss_pred h------hhhCC-------HHH-------HHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHHHHHHHHH
Confidence 2 21111 111 245699999999999999986643211 0134456666666
Q ss_pred CCCceEec
Q 009708 484 HPEFSIDP 491 (528)
Q Consensus 484 ~~~~~~~~ 491 (528)
. +|++..
T Consensus 215 a-Gf~~~~ 221 (241)
T 2ex4_A 215 A-GLSLLA 221 (241)
T ss_dssp T-TCCEEE
T ss_pred c-CCeEEE
Confidence 4 465543
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.08 E-value=2e-10 Score=110.35 Aligned_cols=93 Identities=9% Similarity=0.072 Sum_probs=74.6
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC-CCCCCEEEE
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS-TVKCDKVLL 412 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~-~~~fD~Vl~ 412 (528)
.++.+|||+|||+|..+..+++. ..+|+++|+|+.+++.++++ .. +++++++|+....+.. .++||+|++
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~-----~~-~~~~~~~d~~~~~~~~~~~~fD~v~~ 117 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQ---AARWAAYDFSPELLKLARAN-----AP-HADVYEWNGKGELPAGLGAPFGLIVS 117 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHHHH-----CT-TSEEEECCSCSSCCTTCCCCEEEEEE
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHh-----CC-CceEEEcchhhccCCcCCCCEEEEEe
Confidence 56889999999999999999886 46999999999999999988 23 3789999995433333 478999998
Q ss_pred cCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEE
Q 009708 413 DAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463 (528)
Q Consensus 413 D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvy 463 (528)
.... ..+++++.++|||||+|+.
T Consensus 118 ~~~~----------------------------~~~l~~~~~~LkpgG~l~~ 140 (226)
T 3m33_A 118 RRGP----------------------------TSVILRLPELAAPDAHFLY 140 (226)
T ss_dssp ESCC----------------------------SGGGGGHHHHEEEEEEEEE
T ss_pred CCCH----------------------------HHHHHHHHHHcCCCcEEEE
Confidence 6221 1247788999999999993
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.08 E-value=9.9e-11 Score=125.48 Aligned_cols=113 Identities=14% Similarity=0.118 Sum_probs=87.4
Q ss_pred hcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCE
Q 009708 330 VVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDK 409 (528)
Q Consensus 330 ~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~ 409 (528)
.+...++.+|||+|||+|..++.+++. +..+|+|+|+++ +++.++++++.+|+.++++++++|+.++.. +++||+
T Consensus 153 ~l~~~~~~~VLDiGcGtG~la~~la~~--~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~--~~~fD~ 227 (480)
T 3b3j_A 153 NHTDFKDKIVLDVGCGSGILSFFAAQA--GARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSL--PEQVDI 227 (480)
T ss_dssp TGGGTTTCEEEEESCSTTHHHHHHHHT--TCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCCC--SSCEEE
T ss_pred hhhhcCCCEEEEecCcccHHHHHHHHc--CCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCcc--CCCeEE
Confidence 344457889999999999999988874 456999999998 999999999999997779999999987532 368999
Q ss_pred EEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 410 VLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 410 Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
|+++++... . ..+. ....+..+.++|||||+++...++
T Consensus 228 Ivs~~~~~~----~---------~~e~-------~~~~l~~~~~~LkpgG~li~~~~~ 265 (480)
T 3b3j_A 228 IISEPMGYM----L---------FNER-------MLESYLHAKKYLKPSGNMFPTIGD 265 (480)
T ss_dssp EECCCCHHH----H---------TCHH-------HHHHHHHGGGGEEEEEEEESCEEE
T ss_pred EEEeCchHh----c---------CcHH-------HHHHHHHHHHhcCCCCEEEEEece
Confidence 999876310 0 0011 233466889999999999855444
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=99.08 E-value=4.1e-10 Score=124.83 Aligned_cols=167 Identities=14% Similarity=0.132 Sum_probs=106.2
Q ss_pred cceeEeecchHHHHHHh----cC--CCCCCeEEEeCCccchHHHHHHHHcC--CCcEEEEEcCChHHHHHH--HHHHHH-
Q 009708 314 EGLCAVQDESAGLVVAV----VD--PQPGQSIVDCCAAPGGKTLYMASCLS--GQGLVYAIDINKGRLRIL--NETAKL- 382 (528)
Q Consensus 314 ~G~~~~Qd~~s~l~~~~----l~--~~~g~~VLDl~aG~G~kt~~la~~~~--~~~~v~avD~s~~~l~~~--~~n~~~- 382 (528)
.|.|+....-+.+++.+ +. ..++.+|||.|||+|++.+.++..++ ...+++|+|+++.++..+ +.|+..
T Consensus 294 ~GqFYTP~eLA~lMVeLA~ill~~~l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN 373 (878)
T 3s1s_A 294 EGVVPTDIELGKVLSIISQHILGRPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFP 373 (878)
T ss_dssp CBSSSCCHHHHHHHHHHHHHHHCSCCCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTST
T ss_pred CceEcCCHHHHHHHHHHHhhhccccCCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHh
Confidence 45666666666666665 33 23578999999999999999998764 135799999999999999 666655
Q ss_pred ---cCCCccEEEEcCccccccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHH-----------HHHHHHHHH
Q 009708 383 ---HQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEE-----------LKILQDELL 448 (528)
Q Consensus 383 ---~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~-----------l~~~q~~lL 448 (528)
.|+.+ ..+...|+.........+||+|++|||+++.... +..... ....+.. ...++..++
T Consensus 374 ~LlhGi~~-~~I~~dD~L~~~~~~~~kFDVVIgNPPYg~~~~~---~~e~kd-~~~r~~~g~p~~p~s~~G~~DLy~aFI 448 (878)
T 3s1s_A 374 QLVSSNNA-PTITGEDVCSLNPEDFANVSVVVMNPPYVSGVTD---PAIKRK-FAHKIIQLTGNRPQTLFGQIGVEALFL 448 (878)
T ss_dssp TTCBTTBC-CEEECCCGGGCCGGGGTTEEEEEECCBCCSSCCC---HHHHHH-HHHHHHHHHSSCCSSCSSSCCHHHHHH
T ss_pred hhhcCCCc-ceEEecchhcccccccCCCCEEEECCCccccccc---hhhhhh-HHHHhhhhccccccccccccchHHHHH
Confidence 33332 3556777766432234689999999999642211 100000 0000000 012466789
Q ss_pred HHHhccCcCCCEEEEEcCC-CCc--hhhHHHHHHHHhhCC
Q 009708 449 DAASLLVKPGGVLVYSTCS-IDP--EENEERVEAFLLRHP 485 (528)
Q Consensus 449 ~~a~~~LkpGG~LvysTcs-~~~--~Ene~~v~~~l~~~~ 485 (528)
.++.++|++||++++.+-. +.. ......+..+|.++-
T Consensus 449 e~Al~lLKpGGrLAfIlP~s~Lf~sg~~~kkLRk~LLe~~ 488 (878)
T 3s1s_A 449 ELVTELVQDGTVISAIMPKQYLTAQGNESKAFREFLVGNF 488 (878)
T ss_dssp HHHHHHSCTTCEEEEEEETHHHHCCSHHHHHHHHHHTTTT
T ss_pred HHHHHhcCCCcEEEEEEChHHhccCChHHHHHHHHHHhCC
Confidence 9999999999999877644 221 222445666666543
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=3.4e-10 Score=112.76 Aligned_cols=126 Identities=13% Similarity=0.160 Sum_probs=89.5
Q ss_pred HHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCC---ccEEEEcCccccccc
Q 009708 325 GLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN---SVIRTIHADLRTFAD 401 (528)
Q Consensus 325 ~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~---~~i~~~~~D~~~~~~ 401 (528)
.++...+...++.+|||+|||+|..+..++.. +.+|+|+|+|+.+++.+++++...+.. .++.+..+|+..++.
T Consensus 47 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 123 (293)
T 3thr_A 47 AWLLGLLRQHGCHRVLDVACGTGVDSIMLVEE---GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDK 123 (293)
T ss_dssp HHHHHHHHHTTCCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHH
T ss_pred HHHHHHhcccCCCEEEEecCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCcc
Confidence 34455555567889999999999999999986 459999999999999999988654432 237788899887651
Q ss_pred --cCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 402 --NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 402 --~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
...++||+|++...+ +.+-++... +..+ ...+|+++.++|||||+|++.++.
T Consensus 124 ~~~~~~~fD~V~~~g~~-----l~~~~~~~~--~~~~-------~~~~l~~~~~~LkpgG~l~~~~~~ 177 (293)
T 3thr_A 124 DVPAGDGFDAVICLGNS-----FAHLPDSKG--DQSE-------HRLALKNIASMVRPGGLLVIDHRN 177 (293)
T ss_dssp HSCCTTCEEEEEECTTC-----GGGSCCSSS--SSHH-------HHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred ccccCCCeEEEEEcChH-----HhhcCcccc--CHHH-------HHHHHHHHHHHcCCCeEEEEEeCC
Confidence 124689999974211 222221000 0112 245699999999999999988764
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.08 E-value=2.8e-10 Score=123.41 Aligned_cols=162 Identities=17% Similarity=0.188 Sum_probs=111.8
Q ss_pred ccceeEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCC------------CcEEEEEcCChHHHHHHHHHH
Q 009708 313 KEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSG------------QGLVYAIDINKGRLRILNETA 380 (528)
Q Consensus 313 ~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~------------~~~v~avD~s~~~l~~~~~n~ 380 (528)
+.|.|+....-+.+++.++.+++|++|+|.|||+|++.+.+.+.+.. ...++|+|+++.....++.|+
T Consensus 195 ~~GqfyTP~~Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl 274 (530)
T 3ufb_A 195 DSGEFYTPRPVVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNL 274 (530)
T ss_dssp SCCCCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHH
T ss_pred cCceECCcHHHHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHH
Confidence 46899998889999999999999999999999999999988776532 246999999999999999999
Q ss_pred HHcCCCccEEEEcCcccccccc---CCCCCCEEEEcCCCCCCcc---ccCCchhhccCCHHHHHHHHHHHHHHHHHHhcc
Q 009708 381 KLHQVNSVIRTIHADLRTFADN---STVKCDKVLLDAPCSGLGV---LSKRADLRWNRRLEDMEELKILQDELLDAASLL 454 (528)
Q Consensus 381 ~~~g~~~~i~~~~~D~~~~~~~---~~~~fD~Vl~D~Pcsg~G~---~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~ 454 (528)
-.+|+.. ..+.++|....+.. ...+||+|+.|||+++... ..+.+.. ...+ +.+..++.+++..
T Consensus 275 ~lhg~~~-~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~-~~~~--------~~~~~Fl~~~l~~ 344 (530)
T 3ufb_A 275 LLHGLEY-PRIDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPED-MQTA--------ETAMLFLQLIMRK 344 (530)
T ss_dssp HHHTCSC-CEEECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGG-GCCC--------BHHHHHHHHHHHH
T ss_pred HhcCCcc-ccccccccccCchhhhcccccceEEEecCCCCccccccccccCchh-cccc--------hhHHHHHHHHHHH
Confidence 9999874 45778887654321 1357999999999975321 1111110 0111 1223356666666
Q ss_pred Cc-------CCCEEEEEcCC--CCchhhHHHHHHHHhhC
Q 009708 455 VK-------PGGVLVYSTCS--IDPEENEERVEAFLLRH 484 (528)
Q Consensus 455 Lk-------pGG~LvysTcs--~~~~Ene~~v~~~l~~~ 484 (528)
|| +||++.+.+-. +.....+..+..+|-++
T Consensus 345 Lk~~~~~l~~gGr~avVlP~g~Lf~~~~~~~iRk~Lle~ 383 (530)
T 3ufb_A 345 LKRPGHGSDNGGRAAVVVPNGTLFSDGISARIKEELLKN 383 (530)
T ss_dssp BCCTTSSSSSCCEEEEEEEHHHHHCCTHHHHHHHHHHHH
T ss_pred hhhhhhccCCCceEEEEecchhhhccchHHHHHHHHhhc
Confidence 65 79998766432 33332344455555443
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.07 E-value=2.5e-10 Score=113.18 Aligned_cols=111 Identities=20% Similarity=0.203 Sum_probs=85.5
Q ss_pred HHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC
Q 009708 324 AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS 403 (528)
Q Consensus 324 s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~ 403 (528)
...+...+.+.++.+|||+|||+|..+..++. ..++|+|+|+|+.+++.++++. . +++++++|+..++.
T Consensus 46 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~-----~-~~~~~~~d~~~~~~-- 114 (279)
T 3ccf_A 46 GEDLLQLLNPQPGEFILDLGCGTGQLTEKIAQ---SGAEVLGTDNAATMIEKARQNY-----P-HLHFDVADARNFRV-- 114 (279)
T ss_dssp CCHHHHHHCCCTTCEEEEETCTTSHHHHHHHH---TTCEEEEEESCHHHHHHHHHHC-----T-TSCEEECCTTTCCC--
T ss_pred HHHHHHHhCCCCCCEEEEecCCCCHHHHHHHh---CCCeEEEEECCHHHHHHHHhhC-----C-CCEEEECChhhCCc--
Confidence 33445666778889999999999999999988 3579999999999999998765 3 37788999988653
Q ss_pred CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 404 ~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
.++||+|++.... ..-++ ...+|+++.++|||||+|++++..
T Consensus 115 ~~~fD~v~~~~~l------~~~~d----------------~~~~l~~~~~~LkpgG~l~~~~~~ 156 (279)
T 3ccf_A 115 DKPLDAVFSNAML------HWVKE----------------PEAAIASIHQALKSGGRFVAEFGG 156 (279)
T ss_dssp SSCEEEEEEESCG------GGCSC----------------HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCCcCEEEEcchh------hhCcC----------------HHHHHHHHHHhcCCCcEEEEEecC
Confidence 4689999975332 11111 124689999999999999987654
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.06 E-value=4.4e-10 Score=105.70 Aligned_cols=74 Identities=19% Similarity=0.228 Sum_probs=63.4
Q ss_pred CCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEE
Q 009708 332 DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVL 411 (528)
Q Consensus 332 ~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl 411 (528)
.+.++.+|||+|||+|..+..++.. +..+|+|+|+++.+++.+++|+. +++++++|+..++ ++||+|+
T Consensus 48 ~~~~~~~vlD~gcG~G~~~~~l~~~--~~~~v~~vD~~~~~~~~a~~~~~------~~~~~~~d~~~~~----~~~D~v~ 115 (200)
T 1ne2_A 48 GNIGGRSVIDAGTGNGILACGSYLL--GAESVTAFDIDPDAIETAKRNCG------GVNFMVADVSEIS----GKYDTWI 115 (200)
T ss_dssp TSSBTSEEEEETCTTCHHHHHHHHT--TBSEEEEEESCHHHHHHHHHHCT------TSEEEECCGGGCC----CCEEEEE
T ss_pred CCCCCCEEEEEeCCccHHHHHHHHc--CCCEEEEEECCHHHHHHHHHhcC------CCEEEECcHHHCC----CCeeEEE
Confidence 4557889999999999999999875 34589999999999999999875 3789999998863 5799999
Q ss_pred EcCCCC
Q 009708 412 LDAPCS 417 (528)
Q Consensus 412 ~D~Pcs 417 (528)
+|||..
T Consensus 116 ~~~p~~ 121 (200)
T 1ne2_A 116 MNPPFG 121 (200)
T ss_dssp ECCCC-
T ss_pred ECCCch
Confidence 999983
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.06 E-value=4.4e-10 Score=113.61 Aligned_cols=132 Identities=12% Similarity=0.128 Sum_probs=94.0
Q ss_pred eEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC-CCCCCEEEEcCCC
Q 009708 338 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS-TVKCDKVLLDAPC 416 (528)
Q Consensus 338 ~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~-~~~fD~Vl~D~Pc 416 (528)
+|||+|||.|+.+..+++..+ ..+|++||+++.+++.+++++.... ..+++++++|+..+.... .++||+|++|.+.
T Consensus 92 rVLdIG~G~G~la~~la~~~p-~~~v~~VEidp~vi~~Ar~~~~~~~-~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~ 169 (317)
T 3gjy_A 92 RITHLGGGACTMARYFADVYP-QSRNTVVELDAELARLSREWFDIPR-APRVKIRVDDARMVAESFTPASRDVIIRDVFA 169 (317)
T ss_dssp EEEEESCGGGHHHHHHHHHST-TCEEEEEESCHHHHHHHHHHSCCCC-TTTEEEEESCHHHHHHTCCTTCEEEEEECCST
T ss_pred EEEEEECCcCHHHHHHHHHCC-CcEEEEEECCHHHHHHHHHhccccC-CCceEEEECcHHHHHhhccCCCCCEEEECCCC
Confidence 899999999999999998644 5699999999999999999876543 345999999999876433 4689999999755
Q ss_pred CCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchh-hHHHHHHHHhhCCCceE
Q 009708 417 SGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEE-NEERVEAFLLRHPEFSI 489 (528)
Q Consensus 417 sg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~E-ne~~v~~~l~~~~~~~~ 489 (528)
.. +. |...+ ..++++.+.+.|+|||+|+..+.+..+.+ ...++..+-+.++...+
T Consensus 170 ~~-~~----~~~L~-------------t~efl~~~~r~LkpgGvlv~~~~~~~~~~~~~~~~~tL~~vF~~v~~ 225 (317)
T 3gjy_A 170 GA-IT----PQNFT-------------TVEFFEHCHRGLAPGGLYVANCGDHSDLRGAKSELAGMMEVFEHVAV 225 (317)
T ss_dssp TS-CC----CGGGS-------------BHHHHHHHHHHEEEEEEEEEEEEECTTCHHHHHHHHHHHHHCSEEEE
T ss_pred cc-cc----chhhh-------------HHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHHCCceEE
Confidence 21 11 11000 13568999999999999998776533322 22344444444554443
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=99.06 E-value=7.4e-11 Score=116.37 Aligned_cols=91 Identities=18% Similarity=0.128 Sum_probs=75.4
Q ss_pred HHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCCh-------HHHHHHHHHHHHcCCCccEEEEcCcc
Q 009708 324 AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINK-------GRLRILNETAKLHQVNSVIRTIHADL 396 (528)
Q Consensus 324 s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~-------~~l~~~~~n~~~~g~~~~i~~~~~D~ 396 (528)
..++..++.+.++.+|||+|||+|..++.+|.. +++|+++|+++ .+++.+++|++.+|+.++++++++|+
T Consensus 72 ~~~l~~a~~~~~~~~VLDlgcG~G~~a~~lA~~---g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~ 148 (258)
T 2r6z_A 72 GELIAKAVNHTAHPTVWDATAGLGRDSFVLASL---GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNA 148 (258)
T ss_dssp -CHHHHHTTGGGCCCEEETTCTTCHHHHHHHHT---TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCH
T ss_pred hHHHHHHhCcCCcCeEEEeeCccCHHHHHHHHh---CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCH
Confidence 445556666667889999999999999999985 46899999999 99999999999988876799999999
Q ss_pred ccccccCC---CCCCEEEEcCCCC
Q 009708 397 RTFADNST---VKCDKVLLDAPCS 417 (528)
Q Consensus 397 ~~~~~~~~---~~fD~Vl~D~Pcs 417 (528)
.++..... .+||+|++|||+.
T Consensus 149 ~~~l~~~~~~~~~fD~V~~dP~~~ 172 (258)
T 2r6z_A 149 AEQMPALVKTQGKPDIVYLDPMYP 172 (258)
T ss_dssp HHHHHHHHHHHCCCSEEEECCCC-
T ss_pred HHHHHhhhccCCCccEEEECCCCC
Confidence 88643222 5799999999984
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.06 E-value=3.7e-10 Score=110.28 Aligned_cols=105 Identities=16% Similarity=0.182 Sum_probs=81.8
Q ss_pred CCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEE
Q 009708 332 DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVL 411 (528)
Q Consensus 332 ~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl 411 (528)
.+.++.+|||+|||+|..+..+++. ..+|+|+|+|+.+++.+++++ ..+.. +++++++|+..++. ..++||+|+
T Consensus 36 ~~~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~-~~~~~-~~~~~~~d~~~~~~-~~~~fD~v~ 109 (263)
T 2yqz_A 36 PKGEEPVFLELGVGTGRIALPLIAR---GYRYIALDADAAMLEVFRQKI-AGVDR-KVQVVQADARAIPL-PDESVHGVI 109 (263)
T ss_dssp CSSSCCEEEEETCTTSTTHHHHHTT---TCEEEEEESCHHHHHHHHHHT-TTSCT-TEEEEESCTTSCCS-CTTCEEEEE
T ss_pred CCCCCCEEEEeCCcCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHh-hccCC-ceEEEEcccccCCC-CCCCeeEEE
Confidence 4567889999999999999999875 479999999999999999988 33334 48999999987652 246899999
Q ss_pred EcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 412 LDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 412 ~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
+.... ...+ + ...+++++.++|||||+++++
T Consensus 110 ~~~~l------~~~~---------~-------~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 110 VVHLW------HLVP---------D-------WPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp EESCG------GGCT---------T-------HHHHHHHHHHHEEEEEEEEEE
T ss_pred ECCch------hhcC---------C-------HHHHHHHHHHHCCCCcEEEEE
Confidence 74322 1111 1 134689999999999999876
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.06 E-value=4.1e-10 Score=108.59 Aligned_cols=111 Identities=21% Similarity=0.199 Sum_probs=85.3
Q ss_pred HHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCC
Q 009708 326 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 405 (528)
Q Consensus 326 l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~ 405 (528)
.+...+...++.+|||+|||+|..+..+++. +..+|+++|+++.+++.++++... ++++++++|+..+.. ..+
T Consensus 34 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~~-~~~ 106 (243)
T 3bkw_A 34 ALRAMLPEVGGLRIVDLGCGFGWFCRWAHEH--GASYVLGLDLSEKMLARARAAGPD----TGITYERADLDKLHL-PQD 106 (243)
T ss_dssp HHHHHSCCCTTCEEEEETCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHTSCS----SSEEEEECCGGGCCC-CTT
T ss_pred HHHHhccccCCCEEEEEcCcCCHHHHHHHHC--CCCeEEEEcCCHHHHHHHHHhccc----CCceEEEcChhhccC-CCC
Confidence 4566677678899999999999999999886 234999999999999999877543 248899999987652 246
Q ss_pred CCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 406 ~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
+||+|++.... ...+ + ...+|+.+.++|||||++++++
T Consensus 107 ~fD~v~~~~~l------~~~~---------~-------~~~~l~~~~~~L~pgG~l~~~~ 144 (243)
T 3bkw_A 107 SFDLAYSSLAL------HYVE---------D-------VARLFRTVHQALSPGGHFVFST 144 (243)
T ss_dssp CEEEEEEESCG------GGCS---------C-------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred CceEEEEeccc------cccc---------h-------HHHHHHHHHHhcCcCcEEEEEe
Confidence 89999975432 1111 1 2346899999999999999876
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=9e-11 Score=116.88 Aligned_cols=111 Identities=16% Similarity=0.107 Sum_probs=74.5
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHH-HHcCCCccEEEE--cCccccccccCCCCCCE
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETA-KLHQVNSVIRTI--HADLRTFADNSTVKCDK 409 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~-~~~g~~~~i~~~--~~D~~~~~~~~~~~fD~ 409 (528)
+.+|.+|||+|||||+++..++++ ++|+|+|+++ ++..++++. .......+++++ ++|+..++ .++||+
T Consensus 80 ~~~g~~VLDlGcGtG~~s~~la~~----~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~---~~~fD~ 151 (276)
T 2wa2_A 80 VELKGTVVDLGCGRGSWSYYAASQ----PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKME---PFQADT 151 (276)
T ss_dssp CCCCEEEEEESCTTCHHHHHHHTS----TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC---CCCCSE
T ss_pred CCCCCEEEEeccCCCHHHHHHHHc----CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhCC---CCCcCE
Confidence 567899999999999999998875 6899999998 432222110 000111147888 99998865 368999
Q ss_pred EEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCC--EEEEEcCC
Q 009708 410 VLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG--VLVYSTCS 467 (528)
Q Consensus 410 Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG--~LvysTcs 467 (528)
|++|.. ..+|. + .+..... ..+|..+.++||||| .+++.+..
T Consensus 152 Vvsd~~-~~~~~----~---------~~d~~~~--l~~L~~~~r~LkpGG~~~~v~~~~~ 195 (276)
T 2wa2_A 152 VLCDIG-ESNPT----A---------AVEASRT--LTVLNVISRWLEYNQGCGFCVKVLN 195 (276)
T ss_dssp EEECCC-CCCSC----H---------HHHHHHH--HHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred EEECCC-cCCCc----h---------hhhHHHH--HHHHHHHHHHhccCCCcEEEEEeCC
Confidence 999866 32222 1 1111111 126888999999999 99875544
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.04 E-value=7.2e-11 Score=116.93 Aligned_cols=112 Identities=15% Similarity=0.065 Sum_probs=74.2
Q ss_pred CCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHH-HHcCCCccEEEE--cCccccccccCCCCCC
Q 009708 332 DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETA-KLHQVNSVIRTI--HADLRTFADNSTVKCD 408 (528)
Q Consensus 332 ~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~-~~~g~~~~i~~~--~~D~~~~~~~~~~~fD 408 (528)
.+.+|.+|||+|||||+++..+++. ++|+|+|+++ ++..++++. .......++.++ ++|+..++ .++||
T Consensus 71 ~~~~g~~VLDlGcGtG~~s~~la~~----~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~---~~~fD 142 (265)
T 2oxt_A 71 YVELTGRVVDLGCGRGGWSYYAASR----PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTLP---VERTD 142 (265)
T ss_dssp SCCCCEEEEEESCTTSHHHHHHHTS----TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC---CCCCS
T ss_pred CCCCCCEEEEeCcCCCHHHHHHHHc----CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHCC---CCCCc
Confidence 3567899999999999999998874 6899999998 432221110 000011137888 99998865 36899
Q ss_pred EEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCC--EEEEEcCC
Q 009708 409 KVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG--VLVYSTCS 467 (528)
Q Consensus 409 ~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG--~LvysTcs 467 (528)
+|++|.. ..+|. + .++.... ..+|..+.++||||| .+++.+..
T Consensus 143 ~V~sd~~-~~~~~----~---------~~d~~~~--l~~L~~~~r~LkpGG~~~fv~kv~~ 187 (265)
T 2oxt_A 143 VIMCDVG-ESSPK----W---------SVESERT--IKILELLEKWKVKNPSADFVVKVLC 187 (265)
T ss_dssp EEEECCC-CCCSC----H---------HHHHHHH--HHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred EEEEeCc-ccCCc----c---------chhHHHH--HHHHHHHHHHhccCCCeEEEEEeCC
Confidence 9999966 32222 1 1111111 126888999999999 99865543
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.03 E-value=3.5e-12 Score=124.69 Aligned_cols=128 Identities=13% Similarity=0.121 Sum_probs=93.1
Q ss_pred eEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcc
Q 009708 317 CAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL 396 (528)
Q Consensus 317 ~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~ 396 (528)
|..+......++..+.+.++++|||+|||+|..+..+++. .++|+|+|+|+.+++.++++++ +. .+++++++|+
T Consensus 11 fl~~~~~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~---~~~v~~id~~~~~~~~a~~~~~--~~-~~v~~~~~D~ 84 (245)
T 1yub_A 11 FLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI---SKQVTSIELDSHLFNLSSEKLK--LN-TRVTLIHQDI 84 (245)
T ss_dssp BCCCTTTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHH---SSEEEESSSSCSSSSSSSCTTT--TC-SEEEECCSCC
T ss_pred CCCCHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHh---CCeEEEEECCHHHHHHHHHHhc--cC-CceEEEECCh
Confidence 4556666777888888888999999999999999999987 3799999999999999988775 22 3589999999
Q ss_pred ccccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHH---HHHHHH----HHHhccCcCCCEEEEEc
Q 009708 397 RTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKI---LQDELL----DAASLLVKPGGVLVYST 465 (528)
Q Consensus 397 ~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~---~q~~lL----~~a~~~LkpGG~LvysT 465 (528)
.++.....++| .|++|||+..++. .+..+.. .....+ +.+.++|+|||.|++.+
T Consensus 85 ~~~~~~~~~~f-~vv~n~Py~~~~~--------------~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~ 145 (245)
T 1yub_A 85 LQFQFPNKQRY-KIVGNIPYHLSTQ--------------IIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLL 145 (245)
T ss_dssp TTTTCCCSSEE-EEEEECCSSSCHH--------------HHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred hhcCcccCCCc-EEEEeCCccccHH--------------HHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhh
Confidence 88753212468 8999999954321 1111110 111223 66888899999876443
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.02 E-value=7.5e-10 Score=107.31 Aligned_cols=109 Identities=14% Similarity=0.171 Sum_probs=82.2
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC----CCCCC
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS----TVKCD 408 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~----~~~fD 408 (528)
+.++.+|||+|||+|..+..++... .+|+++|+|+.+++.+++++ ... +++++++|+.++.... ...||
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~~---~~v~gvD~s~~~~~~a~~~~---~~~-~~~~~~~d~~~~~~~~~~~~~~~~d 126 (245)
T 3ggd_A 54 FNPELPLIDFACGNGTQTKFLSQFF---PRVIGLDVSKSALEIAAKEN---TAA-NISYRLLDGLVPEQAAQIHSEIGDA 126 (245)
T ss_dssp SCTTSCEEEETCTTSHHHHHHHHHS---SCEEEEESCHHHHHHHHHHS---CCT-TEEEEECCTTCHHHHHHHHHHHCSC
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHhC---CCEEEEECCHHHHHHHHHhC---ccc-CceEEECcccccccccccccccCcc
Confidence 5678899999999999999999873 38999999999999999876 222 4899999998754321 12499
Q ss_pred EEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCC
Q 009708 409 KVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 468 (528)
Q Consensus 409 ~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~ 468 (528)
+|++...... . ...+. ..+++++.++|||||+|++++...
T Consensus 127 ~v~~~~~~~~------~-------~~~~~-------~~~l~~~~~~LkpgG~l~i~~~~~ 166 (245)
T 3ggd_A 127 NIYMRTGFHH------I-------PVEKR-------ELLGQSLRILLGKQGAMYLIELGT 166 (245)
T ss_dssp EEEEESSSTT------S-------CGGGH-------HHHHHHHHHHHTTTCEEEEEEECT
T ss_pred EEEEcchhhc------C-------CHHHH-------HHHHHHHHHHcCCCCEEEEEeCCc
Confidence 9998644321 1 11222 346999999999999988876654
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=1.4e-09 Score=112.36 Aligned_cols=118 Identities=16% Similarity=0.088 Sum_probs=92.1
Q ss_pred HHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC
Q 009708 324 AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS 403 (528)
Q Consensus 324 s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~ 403 (528)
...+...++..++.+|||+|||+|..+..+++.. +..+++++|+ +.+++.+++++...|+.++++++++|+.+..
T Consensus 171 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--- 245 (374)
T 1qzz_A 171 YEAPADAYDWSAVRHVLDVGGGNGGMLAAIALRA-PHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPL--- 245 (374)
T ss_dssp THHHHHTSCCTTCCEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCC---
T ss_pred HHHHHHhCCCCCCCEEEEECCCcCHHHHHHHHHC-CCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCcC---
Confidence 3445556667778899999999999999999875 4579999999 9999999999999998867999999987622
Q ss_pred CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcC
Q 009708 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466 (528)
Q Consensus 404 ~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTc 466 (528)
+..||+|++.... .. ..... ...+|+++.+.|||||+|++.+.
T Consensus 246 ~~~~D~v~~~~vl------~~-------~~~~~-------~~~~l~~~~~~L~pgG~l~i~e~ 288 (374)
T 1qzz_A 246 PVTADVVLLSFVL------LN-------WSDED-------ALTILRGCVRALEPGGRLLVLDR 288 (374)
T ss_dssp SCCEEEEEEESCG------GG-------SCHHH-------HHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCCCCEEEEeccc------cC-------CCHHH-------HHHHHHHHHHhcCCCcEEEEEec
Confidence 2349999974322 11 11111 23579999999999999998766
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.02 E-value=7e-10 Score=107.34 Aligned_cols=103 Identities=14% Similarity=0.113 Sum_probs=78.6
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccc-ccCCCCCCEEE
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA-DNSTVKCDKVL 411 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~-~~~~~~fD~Vl 411 (528)
..++.+|||+|||+|..+..+++. +.+|+|+|+|+.+++.++++ ++++++|+.++. +...++||+|+
T Consensus 39 ~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~---------~~~~~~d~~~~~~~~~~~~fD~i~ 106 (240)
T 3dli_A 39 FKGCRRVLDIGCGRGEFLELCKEE---GIESIGVDINEDMIKFCEGK---------FNVVKSDAIEYLKSLPDKYLDGVM 106 (240)
T ss_dssp TTTCSCEEEETCTTTHHHHHHHHH---TCCEEEECSCHHHHHHHHTT---------SEEECSCHHHHHHTSCTTCBSEEE
T ss_pred hcCCCeEEEEeCCCCHHHHHHHhC---CCcEEEEECCHHHHHHHHhh---------cceeeccHHHHhhhcCCCCeeEEE
Confidence 456789999999999999999886 45799999999999988765 568899988763 22347899999
Q ss_pred EcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 412 LDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 412 ~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
+.- ++..-+ ..++ ..+++++.++|||||++++++..
T Consensus 107 ~~~------~l~~~~-------~~~~-------~~~l~~~~~~LkpgG~l~~~~~~ 142 (240)
T 3dli_A 107 ISH------FVEHLD-------PERL-------FELLSLCYSKMKYSSYIVIESPN 142 (240)
T ss_dssp EES------CGGGSC-------GGGH-------HHHHHHHHHHBCTTCCEEEEEEC
T ss_pred ECC------chhhCC-------cHHH-------HHHHHHHHHHcCCCcEEEEEeCC
Confidence 742 222211 1122 34699999999999999987754
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=2.8e-10 Score=113.93 Aligned_cols=122 Identities=16% Similarity=0.128 Sum_probs=82.0
Q ss_pred cCCCCCCeEEEeCC------ccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEE-EcCccccccccC
Q 009708 331 VDPQPGQSIVDCCA------APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRT-IHADLRTFADNS 403 (528)
Q Consensus 331 l~~~~g~~VLDl~a------G~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~-~~~D~~~~~~~~ 403 (528)
+.+.+|.+|||+|| |||+ ..++++++..++|+|+|+++. ++ ++++ +++|+..+..
T Consensus 59 l~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-------------v~-~v~~~i~gD~~~~~~-- 120 (290)
T 2xyq_A 59 LAVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-------------VS-DADSTLIGDCATVHT-- 120 (290)
T ss_dssp CCCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-------------BC-SSSEEEESCGGGCCC--
T ss_pred cCCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-------------CC-CCEEEEECccccCCc--
Confidence 45788999999999 7788 556666665689999999998 13 3678 9999987643
Q ss_pred CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHHHhh
Q 009708 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLR 483 (528)
Q Consensus 404 ~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~l~~ 483 (528)
.++||+|++|+++...|....+.. .. ..++..+++.+.++|||||+|++.+... ...+ .+.+.+++
T Consensus 121 ~~~fD~Vvsn~~~~~~g~~~~d~~----~~-------~~l~~~~l~~a~r~LkpGG~~v~~~~~~--~~~~-~l~~~l~~ 186 (290)
T 2xyq_A 121 ANKWDLIISDMYDPRTKHVTKEND----SK-------EGFFTYLCGFIKQKLALGGSIAVKITEH--SWNA-DLYKLMGH 186 (290)
T ss_dssp SSCEEEEEECCCCCC---CCSCCC----CC-------CTHHHHHHHHHHHHEEEEEEEEEEECSS--SCCH-HHHHHHTT
T ss_pred cCcccEEEEcCCcccccccccccc----ch-------HHHHHHHHHHHHHhcCCCcEEEEEEecc--CCHH-HHHHHHHH
Confidence 267999999987655554322110 00 1123467999999999999999754332 2222 44456665
Q ss_pred C
Q 009708 484 H 484 (528)
Q Consensus 484 ~ 484 (528)
+
T Consensus 187 ~ 187 (290)
T 2xyq_A 187 F 187 (290)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=4e-10 Score=110.53 Aligned_cols=103 Identities=20% Similarity=0.234 Sum_probs=79.0
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEc
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLD 413 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D 413 (528)
.++.+|||+|||+|..+..+++. ..+|+|+|+|+.+++.+++++. +++++++|+..+.. .++||+|++.
T Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~------~~~~~~~d~~~~~~--~~~fD~v~~~ 117 (263)
T 3pfg_A 49 PKAASLLDVACGTGMHLRHLADS---FGTVEGLELSADMLAIARRRNP------DAVLHHGDMRDFSL--GRRFSAVTCM 117 (263)
T ss_dssp TTCCEEEEETCTTSHHHHHHTTT---SSEEEEEESCHHHHHHHHHHCT------TSEEEECCTTTCCC--SCCEEEEEEC
T ss_pred CCCCcEEEeCCcCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCC------CCEEEECChHHCCc--cCCcCEEEEc
Confidence 35679999999999999999875 4689999999999999988743 37899999988654 4789999975
Q ss_pred CCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 414 APCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 414 ~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
.. ++..-+ ++.+ ...+|+.+.++|||||+|++++
T Consensus 118 ~~-----~l~~~~------~~~~-------~~~~l~~~~~~L~pgG~l~i~~ 151 (263)
T 3pfg_A 118 FS-----SIGHLA------GQAE-------LDAALERFAAHVLPDGVVVVEP 151 (263)
T ss_dssp TT-----GGGGSC------HHHH-------HHHHHHHHHHTEEEEEEEEECC
T ss_pred Cc-----hhhhcC------CHHH-------HHHHHHHHHHhcCCCcEEEEEe
Confidence 31 111111 1122 2456999999999999999864
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.01 E-value=1.2e-10 Score=114.90 Aligned_cols=115 Identities=17% Similarity=0.092 Sum_probs=78.6
Q ss_pred CCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcC--C------------------------
Q 009708 332 DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQ--V------------------------ 385 (528)
Q Consensus 332 ~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g--~------------------------ 385 (528)
...+|.+|||+|||+|..+..++.. +..+|+|+|+|+.+++.++++++... +
T Consensus 52 ~~~~g~~vLDiGCG~G~~~~~~~~~--~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~ 129 (263)
T 2a14_A 52 GGLQGDTLIDIGSGPTIYQVLAACD--SFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEE 129 (263)
T ss_dssp TSCCEEEEEESSCTTCCGGGTTGGG--TEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHH
T ss_pred CCCCCceEEEeCCCccHHHHHHHHh--hhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHH
Confidence 4457889999999999887766543 23479999999999999999876542 1
Q ss_pred --CccEE-EEcCcccccccc---CCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCC
Q 009708 386 --NSVIR-TIHADLRTFADN---STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459 (528)
Q Consensus 386 --~~~i~-~~~~D~~~~~~~---~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG 459 (528)
...+. ++++|+....+. ..++||+|++.- ++ ..+..-......+|+++.++|||||
T Consensus 130 ~~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~------~l------------~~i~~~~~~~~~~l~~i~r~LKPGG 191 (263)
T 2a14_A 130 KLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLL------AM------------ECACCSLDAYRAALCNLASLLKPGG 191 (263)
T ss_dssp HHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEES------CH------------HHHCSSHHHHHHHHHHHHTTEEEEE
T ss_pred HHHhhhheEEeccccCCCCCCccccCCCCEeeehH------HH------------HHhcCCHHHHHHHHHHHHHHcCCCc
Confidence 01243 788998874221 135899999631 11 1100001123457999999999999
Q ss_pred EEEEEcC
Q 009708 460 VLVYSTC 466 (528)
Q Consensus 460 ~LvysTc 466 (528)
+|++++.
T Consensus 192 ~li~~~~ 198 (263)
T 2a14_A 192 HLVTTVT 198 (263)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 9999864
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.01 E-value=9.3e-10 Score=106.12 Aligned_cols=104 Identities=12% Similarity=0.115 Sum_probs=81.1
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEc
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLD 413 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D 413 (528)
.++.+|||+|||+|..+..++.. +.+|+++|+++.+++.++++. .. .+++++++|+..++. ..++||+|++.
T Consensus 52 ~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~---~~-~~~~~~~~d~~~~~~-~~~~fD~v~~~ 123 (242)
T 3l8d_A 52 KKEAEVLDVGCGDGYGTYKLSRT---GYKAVGVDISEVMIQKGKERG---EG-PDLSFIKGDLSSLPF-ENEQFEAIMAI 123 (242)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHTTT---CB-TTEEEEECBTTBCSS-CTTCEEEEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhc---cc-CCceEEEcchhcCCC-CCCCccEEEEc
Confidence 46789999999999999999986 469999999999999988774 22 348999999988653 24789999974
Q ss_pred CCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 414 APCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 414 ~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
... ...++ ...+|+.+.++|||||++++++..
T Consensus 124 ~~l------~~~~~----------------~~~~l~~~~~~L~pgG~l~i~~~~ 155 (242)
T 3l8d_A 124 NSL------EWTEE----------------PLRALNEIKRVLKSDGYACIAILG 155 (242)
T ss_dssp SCT------TSSSC----------------HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ChH------hhccC----------------HHHHHHHHHHHhCCCeEEEEEEcC
Confidence 322 22121 134689999999999999988754
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.01 E-value=1.3e-10 Score=112.03 Aligned_cols=102 Identities=16% Similarity=0.141 Sum_probs=79.5
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEc
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLD 413 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D 413 (528)
.++.+|||+|||+|..+..+++. ..+|+|+|+|+.+++.+++++.. +++++++|+.++. ..++||+|++.
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~-----~v~~~~~d~~~~~--~~~~fD~v~~~ 110 (250)
T 2p7i_A 41 FRPGNLLELGSFKGDFTSRLQEH---FNDITCVEASEEAISHAQGRLKD-----GITYIHSRFEDAQ--LPRRYDNIVLT 110 (250)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTT---CSCEEEEESCHHHHHHHHHHSCS-----CEEEEESCGGGCC--CSSCEEEEEEE
T ss_pred cCCCcEEEECCCCCHHHHHHHHh---CCcEEEEeCCHHHHHHHHHhhhC-----CeEEEEccHHHcC--cCCcccEEEEh
Confidence 46779999999999999999875 34899999999999999887543 3889999998873 34789999974
Q ss_pred CCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHh-ccCcCCCEEEEEcCC
Q 009708 414 APCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAAS-LLVKPGGVLVYSTCS 467 (528)
Q Consensus 414 ~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~-~~LkpGG~LvysTcs 467 (528)
- ++.+-++ ...+|+++. ++|||||+|++++..
T Consensus 111 ~------~l~~~~~----------------~~~~l~~~~~~~LkpgG~l~i~~~~ 143 (250)
T 2p7i_A 111 H------VLEHIDD----------------PVALLKRINDDWLAEGGRLFLVCPN 143 (250)
T ss_dssp S------CGGGCSS----------------HHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred h------HHHhhcC----------------HHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 2 2222211 134699999 999999999987744
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=5.2e-09 Score=107.71 Aligned_cols=122 Identities=17% Similarity=0.160 Sum_probs=93.9
Q ss_pred hHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc
Q 009708 323 SAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 402 (528)
Q Consensus 323 ~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~ 402 (528)
....+...++..++.+|||+|||+|..+..+++.. +..+++++|+ +.+++.++++++..++.++++++.+|+.+.+.
T Consensus 178 ~~~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~- 254 (359)
T 1x19_A 178 AIQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESY- 254 (359)
T ss_dssp HHHHHHHHCCCTTCCEEEEESCTTCHHHHHHHHHC-TTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCC-
T ss_pred hHHHHHHhcCCCCCCEEEEECCcccHHHHHHHHHC-CCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCC-
Confidence 33445556667778899999999999999999985 3579999999 99999999999999988789999999987532
Q ss_pred CCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCC
Q 009708 403 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSID 469 (528)
Q Consensus 403 ~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~ 469 (528)
..+|+|++.-.. .. +..++ ..++|+++.+.|||||+|++.+....
T Consensus 255 --~~~D~v~~~~vl------h~-------~~d~~-------~~~~l~~~~~~L~pgG~l~i~e~~~~ 299 (359)
T 1x19_A 255 --PEADAVLFCRIL------YS-------ANEQL-------STIMCKKAFDAMRSGGRLLILDMVID 299 (359)
T ss_dssp --CCCSEEEEESCG------GG-------SCHHH-------HHHHHHHHHTTCCTTCEEEEEEECCC
T ss_pred --CCCCEEEEechh------cc-------CCHHH-------HHHHHHHHHHhcCCCCEEEEEecccC
Confidence 235999973222 11 11122 34569999999999999987765543
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.00 E-value=5e-10 Score=110.37 Aligned_cols=114 Identities=18% Similarity=0.237 Sum_probs=81.6
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDA 414 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~ 414 (528)
.+.+|||+|||+|..+..++.. ..+|+|+|+|+.+++.+++ .. +++++++|+.+++. ..++||+|++.-
T Consensus 39 ~~~~vLDvGcGtG~~~~~l~~~---~~~v~gvD~s~~ml~~a~~------~~-~v~~~~~~~e~~~~-~~~sfD~v~~~~ 107 (257)
T 4hg2_A 39 ARGDALDCGCGSGQASLGLAEF---FERVHAVDPGEAQIRQALR------HP-RVTYAVAPAEDTGL-PPASVDVAIAAQ 107 (257)
T ss_dssp CSSEEEEESCTTTTTHHHHHTT---CSEEEEEESCHHHHHTCCC------CT-TEEEEECCTTCCCC-CSSCEEEEEECS
T ss_pred CCCCEEEEcCCCCHHHHHHHHh---CCEEEEEeCcHHhhhhhhh------cC-Cceeehhhhhhhcc-cCCcccEEEEee
Confidence 3569999999999999999875 4689999999999977643 23 48999999987653 347899999721
Q ss_pred CCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCch--hhHHHHHHHHh
Q 009708 415 PCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPE--ENEERVEAFLL 482 (528)
Q Consensus 415 Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~--Ene~~v~~~l~ 482 (528)
++. |. +. ..++.++.++|||||+|++.+...... +-...+..+..
T Consensus 108 ------~~h------~~-~~----------~~~~~e~~rvLkpgG~l~~~~~~~~~~~~~~~~~~~~~~~ 154 (257)
T 4hg2_A 108 ------AMH------WF-DL----------DRFWAELRRVARPGAVFAAVTYGLTRVDPEVDAVVDRLYH 154 (257)
T ss_dssp ------CCT------TC-CH----------HHHHHHHHHHEEEEEEEEEEEECCCBCCHHHHHHHHHHHH
T ss_pred ------ehh------Hh-hH----------HHHHHHHHHHcCCCCEEEEEECCCCCCCHHHHHHHHHHHh
Confidence 111 11 11 135888999999999999877765432 22334445443
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.6e-09 Score=104.13 Aligned_cols=106 Identities=15% Similarity=0.180 Sum_probs=80.4
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEc
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLD 413 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D 413 (528)
.++.+|||+|||+|..+..+++.. .+|+++|+|+.+++.++++. . +++++++|+..+.. .++||+|++.
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~~-----~-~~~~~~~d~~~~~~--~~~~D~v~~~ 107 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEF---GDTAGLELSEDMLTHARKRL-----P-DATLHQGDMRDFRL--GRKFSAVVSM 107 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHH---SEEEEEESCHHHHHHHHHHC-----T-TCEEEECCTTTCCC--SSCEEEEEEC
T ss_pred CCCCeEEEecccCCHHHHHHHHhC---CcEEEEeCCHHHHHHHHHhC-----C-CCEEEECCHHHccc--CCCCcEEEEc
Confidence 467899999999999999999873 38999999999999998864 3 37889999987653 4689999952
Q ss_pred CCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCC
Q 009708 414 APCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 468 (528)
Q Consensus 414 ~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~ 468 (528)
. +++... .+..+ ...+|+.+.++|||||.++++++..
T Consensus 108 ~-----~~~~~~------~~~~~-------~~~~l~~~~~~L~pgG~l~~~~~~~ 144 (239)
T 3bxo_A 108 F-----SSVGYL------KTTEE-------LGAAVASFAEHLEPGGVVVVEPWWF 144 (239)
T ss_dssp T-----TGGGGC------CSHHH-------HHHHHHHHHHTEEEEEEEEECCCCC
T ss_pred C-----chHhhc------CCHHH-------HHHHHHHHHHhcCCCeEEEEEeccC
Confidence 1 122111 11222 2456999999999999999887654
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.00 E-value=6e-10 Score=109.49 Aligned_cols=110 Identities=15% Similarity=0.176 Sum_probs=83.7
Q ss_pred HHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC
Q 009708 324 AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS 403 (528)
Q Consensus 324 s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~ 403 (528)
...+...+.+.++.+|||+|||+|..+..+++ ...+|+|+|+|+.+++.++++. +++++++|+..++. .
T Consensus 23 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~-------~~~~~~~d~~~~~~-~ 91 (261)
T 3ege_A 23 VNAIINLLNLPKGSVIADIGAGTGGYSVALAN---QGLFVYAVEPSIVMRQQAVVHP-------QVEWFTGYAENLAL-P 91 (261)
T ss_dssp HHHHHHHHCCCTTCEEEEETCTTSHHHHHHHT---TTCEEEEECSCHHHHHSSCCCT-------TEEEECCCTTSCCS-C
T ss_pred HHHHHHHhCCCCCCEEEEEcCcccHHHHHHHh---CCCEEEEEeCCHHHHHHHHhcc-------CCEEEECchhhCCC-C
Confidence 44555666777889999999999999999986 3579999999999988766543 48999999987652 2
Q ss_pred CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 404 ~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
.++||+|++.... ..-+ + ...+++++.++|| ||++++.++.
T Consensus 92 ~~~fD~v~~~~~l------~~~~---------~-------~~~~l~~~~~~Lk-gG~~~~~~~~ 132 (261)
T 3ege_A 92 DKSVDGVISILAI------HHFS---------H-------LEKSFQEMQRIIR-DGTIVLLTFD 132 (261)
T ss_dssp TTCBSEEEEESCG------GGCS---------S-------HHHHHHHHHHHBC-SSCEEEEEEC
T ss_pred CCCEeEEEEcchH------hhcc---------C-------HHHHHHHHHHHhC-CcEEEEEEcC
Confidence 4789999975332 1111 1 2346999999999 9988877765
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.2e-09 Score=110.96 Aligned_cols=120 Identities=18% Similarity=0.168 Sum_probs=92.2
Q ss_pred HHHHhcCC--CCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC
Q 009708 326 LVVAVVDP--QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS 403 (528)
Q Consensus 326 l~~~~l~~--~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~ 403 (528)
.+...++. .++.+|||+|||+|..+..+++.. +..+++++|++ .+++.+++++...|+.++++++.+|+.+...
T Consensus 154 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-- 229 (335)
T 2r3s_A 154 LIAQLVNENKIEPLKVLDISASHGLFGIAVAQHN-PNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDY-- 229 (335)
T ss_dssp HHHHHHTC--CCCSEEEEETCTTCHHHHHHHHHC-TTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCC--
T ss_pred HHHHhcccccCCCCEEEEECCCcCHHHHHHHHHC-CCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCCC--
Confidence 33444555 678899999999999999999885 45799999999 9999999999999988789999999987532
Q ss_pred CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCC
Q 009708 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSID 469 (528)
Q Consensus 404 ~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~ 469 (528)
+..||+|++.-.. .. ....+ ..++|+++.+.|+|||++++.+....
T Consensus 230 ~~~~D~v~~~~~l------~~-------~~~~~-------~~~~l~~~~~~L~pgG~l~i~e~~~~ 275 (335)
T 2r3s_A 230 GNDYDLVLLPNFL------HH-------FDVAT-------CEQLLRKIKTALAVEGKVIVFDFIPN 275 (335)
T ss_dssp CSCEEEEEEESCG------GG-------SCHHH-------HHHHHHHHHHHEEEEEEEEEEECCCC
T ss_pred CCCCcEEEEcchh------cc-------CCHHH-------HHHHHHHHHHhCCCCcEEEEEeecCC
Confidence 2459999973221 11 11122 24569999999999999888766544
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.99 E-value=3.6e-10 Score=118.07 Aligned_cols=81 Identities=15% Similarity=0.124 Sum_probs=68.9
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHc--CCCccEEEEcCccccccccC-CCCCCEEE
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLH--QVNSVIRTIHADLRTFADNS-TVKCDKVL 411 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~--g~~~~i~~~~~D~~~~~~~~-~~~fD~Vl 411 (528)
+|.+|||+|||+|..++.++.. ..+|+++|+|+.+++.+++|++.+ |++ +++++++|+.++.... ..+||+|+
T Consensus 93 ~g~~VLDLgcG~G~~al~LA~~---g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~-~i~~i~~Da~~~L~~~~~~~fDvV~ 168 (410)
T 3ll7_A 93 EGTKVVDLTGGLGIDFIALMSK---ASQGIYIERNDETAVAARHNIPLLLNEGK-DVNILTGDFKEYLPLIKTFHPDYIY 168 (410)
T ss_dssp TTCEEEESSCSSSHHHHHHHTT---CSEEEEEESCHHHHHHHHHHHHHHSCTTC-EEEEEESCGGGSHHHHHHHCCSEEE
T ss_pred CCCEEEEeCCCchHHHHHHHhc---CCEEEEEECCHHHHHHHHHhHHHhccCCC-cEEEEECcHHHhhhhccCCCceEEE
Confidence 4889999999999999998874 579999999999999999999998 885 5999999998863321 24799999
Q ss_pred EcCCCCCC
Q 009708 412 LDAPCSGL 419 (528)
Q Consensus 412 ~D~Pcsg~ 419 (528)
+|||..+.
T Consensus 169 lDPPrr~~ 176 (410)
T 3ll7_A 169 VDPARRSG 176 (410)
T ss_dssp ECCEEC--
T ss_pred ECCCCcCC
Confidence 99999763
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=98.99 E-value=2e-09 Score=110.29 Aligned_cols=120 Identities=18% Similarity=0.191 Sum_probs=92.7
Q ss_pred HhcCCCC-CCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCC
Q 009708 329 AVVDPQP-GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC 407 (528)
Q Consensus 329 ~~l~~~~-g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~f 407 (528)
..++..+ +.+|||+|||+|..+..+++..+ ..+++++|+ +.+++.+++++...++.++++++.+|+.......+..|
T Consensus 172 ~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 249 (352)
T 3mcz_A 172 SELGVFARARTVIDLAGGHGTYLAQVLRRHP-QLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAA 249 (352)
T ss_dssp HTCGGGTTCCEEEEETCTTCHHHHHHHHHCT-TCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCE
T ss_pred HhCCCcCCCCEEEEeCCCcCHHHHHHHHhCC-CCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCc
Confidence 3445555 78999999999999999998754 579999999 88999999999999998889999999987652234569
Q ss_pred CEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCc
Q 009708 408 DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDP 470 (528)
Q Consensus 408 D~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~ 470 (528)
|+|++.- ++.. +...+ ...+|+++.+.|||||+|++....+..
T Consensus 250 D~v~~~~------vlh~-------~~~~~-------~~~~l~~~~~~L~pgG~l~i~e~~~~~ 292 (352)
T 3mcz_A 250 DVVMLND------CLHY-------FDARE-------AREVIGHAAGLVKPGGALLILTMTMND 292 (352)
T ss_dssp EEEEEES------CGGG-------SCHHH-------HHHHHHHHHHTEEEEEEEEEEEECCCT
T ss_pred cEEEEec------cccc-------CCHHH-------HHHHHHHHHHHcCCCCEEEEEEeccCC
Confidence 9999732 1211 12222 245699999999999999987765443
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=1.3e-09 Score=109.88 Aligned_cols=112 Identities=17% Similarity=0.156 Sum_probs=83.2
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcC------CCccEEEEcCcccccc----cc-C
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQ------VNSVIRTIHADLRTFA----DN-S 403 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g------~~~~i~~~~~D~~~~~----~~-~ 403 (528)
++.+|||+|||+|..+..+++. +..+|+++|+|+.+++.++++....+ ...+++++++|+.... .. .
T Consensus 34 ~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 111 (313)
T 3bgv_A 34 RDITVLDLGCGKGGDLLKWKKG--RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDP 111 (313)
T ss_dssp -CCEEEEETCTTTTTHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSST
T ss_pred CCCEEEEECCCCcHHHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccC
Confidence 6779999999999999998874 45799999999999999999987652 1224899999998764 11 1
Q ss_pred CCCCCEEEEcCCCCCCccccCCchhhcc-CCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 404 TVKCDKVLLDAPCSGLGVLSKRADLRWN-RRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 404 ~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~-~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
.++||+|++.... .|. .+..+ ...+|.++.++|||||.+++++..
T Consensus 112 ~~~fD~V~~~~~l------------~~~~~~~~~-------~~~~l~~~~~~LkpgG~li~~~~~ 157 (313)
T 3bgv_A 112 QMCFDICSCQFVC------------HYSFESYEQ-------ADMMLRNACERLSPGGYFIGTTPN 157 (313)
T ss_dssp TCCEEEEEEETCG------------GGGGGSHHH-------HHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred CCCEEEEEEecch------------hhccCCHHH-------HHHHHHHHHHHhCCCcEEEEecCC
Confidence 3489999974311 121 12222 235699999999999999987653
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=1.7e-09 Score=108.61 Aligned_cols=94 Identities=20% Similarity=0.208 Sum_probs=77.5
Q ss_pred eEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcc
Q 009708 317 CAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL 396 (528)
Q Consensus 317 ~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~ 396 (528)
|.+.......++..+++.++++|||+|||+|..|..+++. ..+|+|+|+|+.+++.+++++.. .. +++++++|+
T Consensus 32 fL~d~~i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~---~~~V~aVEid~~li~~a~~~~~~--~~-~v~vi~gD~ 105 (295)
T 3gru_A 32 FLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKN---AKKVYVIEIDKSLEPYANKLKEL--YN-NIEIIWGDA 105 (295)
T ss_dssp EECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEEESCGGGHHHHHHHHHH--CS-SEEEEESCT
T ss_pred ccCCHHHHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhc---CCEEEEEECCHHHHHHHHHHhcc--CC-CeEEEECch
Confidence 4444444566777888889999999999999999999987 47999999999999999999873 34 489999999
Q ss_pred ccccccCCCCCCEEEEcCCCC
Q 009708 397 RTFADNSTVKCDKVLLDAPCS 417 (528)
Q Consensus 397 ~~~~~~~~~~fD~Vl~D~Pcs 417 (528)
..+... ...||.|++|+|+.
T Consensus 106 l~~~~~-~~~fD~Iv~NlPy~ 125 (295)
T 3gru_A 106 LKVDLN-KLDFNKVVANLPYQ 125 (295)
T ss_dssp TTSCGG-GSCCSEEEEECCGG
T ss_pred hhCCcc-cCCccEEEEeCccc
Confidence 876533 24699999999983
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=8.9e-09 Score=106.55 Aligned_cols=120 Identities=14% Similarity=0.033 Sum_probs=92.8
Q ss_pred HHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCC
Q 009708 326 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 405 (528)
Q Consensus 326 l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~ 405 (528)
.+...++..++.+|||+|||+|..+..+++.. +..+++++|+ +..++.+++++...++.++++++.+|+.... +.
T Consensus 193 ~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~---p~ 267 (369)
T 3gwz_A 193 QVAAAYDFSGAATAVDIGGGRGSLMAAVLDAF-PGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFETI---PD 267 (369)
T ss_dssp HHHHHSCCTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTTCC---CS
T ss_pred HHHHhCCCccCcEEEEeCCCccHHHHHHHHHC-CCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCCCC---CC
Confidence 34455566778899999999999999999874 4679999999 9999999999999998878999999998322 23
Q ss_pred CCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCc
Q 009708 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDP 470 (528)
Q Consensus 406 ~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~ 470 (528)
.||+|++.-.. .. +.... ..++|+++.+.|||||+|++.+.....
T Consensus 268 ~~D~v~~~~vl------h~-------~~d~~-------~~~~L~~~~~~L~pgG~l~i~e~~~~~ 312 (369)
T 3gwz_A 268 GADVYLIKHVL------HD-------WDDDD-------VVRILRRIATAMKPDSRLLVIDNLIDE 312 (369)
T ss_dssp SCSEEEEESCG------GG-------SCHHH-------HHHHHHHHHTTCCTTCEEEEEEEBCCS
T ss_pred CceEEEhhhhh------cc-------CCHHH-------HHHHHHHHHHHcCCCCEEEEEEeccCC
Confidence 79999873221 11 12222 235799999999999999987765543
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=98.97 E-value=4.7e-09 Score=108.41 Aligned_cols=115 Identities=11% Similarity=0.018 Sum_probs=88.5
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEc
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLD 413 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D 413 (528)
..+.+|||+|||+|..+..+++.. +..+++++|+ +.+++.+++++...++.++++++.+|+.......++.||+|++-
T Consensus 178 ~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p~~~D~v~~~ 255 (363)
T 3dp7_A 178 HHPKRLLDIGGNTGKWATQCVQYN-KEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPTGFDAVWMS 255 (363)
T ss_dssp GCCSEEEEESCTTCHHHHHHHHHS-TTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCCCCCSEEEEE
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhC-CCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCCCCcCEEEEe
Confidence 346799999999999999999874 4579999999 99999999999998887789999999987420112679999973
Q ss_pred CCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCc
Q 009708 414 APCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDP 470 (528)
Q Consensus 414 ~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~ 470 (528)
--. .. +...+. ..+|+++.+.|||||+|++....+..
T Consensus 256 ~vl------h~-------~~~~~~-------~~~l~~~~~~L~pgG~l~i~e~~~~~ 292 (363)
T 3dp7_A 256 QFL------DC-------FSEEEV-------ISILTRVAQSIGKDSKVYIMETLWDR 292 (363)
T ss_dssp SCS------TT-------SCHHHH-------HHHHHHHHHHCCTTCEEEEEECCTTS
T ss_pred chh------hh-------CCHHHH-------HHHHHHHHHhcCCCcEEEEEeeccCC
Confidence 221 11 122222 35699999999999999987765543
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=98.97 E-value=6.8e-10 Score=109.28 Aligned_cols=92 Identities=21% Similarity=0.179 Sum_probs=74.4
Q ss_pred hHHHHHHhcCCCCC--CeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcC--------CCccEEEE
Q 009708 323 SAGLVVAVVDPQPG--QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQ--------VNSVIRTI 392 (528)
Q Consensus 323 ~s~l~~~~l~~~~g--~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g--------~~~~i~~~ 392 (528)
....+..++.+.+| .+|||+|||+|..++.+|.+ +++|+++|+++..+..+++++++.+ +.++++++
T Consensus 74 ~~e~l~~al~l~~g~~~~VLDl~~G~G~dal~lA~~---g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~ 150 (258)
T 2oyr_A 74 RGEAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLI 150 (258)
T ss_dssp GGSHHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHH---TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEE
T ss_pred hHHHHHHHhcccCCCCCEEEEcCCcCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEE
Confidence 34556667777777 89999999999999999987 4589999999999888888876542 32459999
Q ss_pred cCccccccccCCCCCCEEEEcCCCC
Q 009708 393 HADLRTFADNSTVKCDKVLLDAPCS 417 (528)
Q Consensus 393 ~~D~~~~~~~~~~~fD~Vl~D~Pcs 417 (528)
++|+.++.......||+|++|||+.
T Consensus 151 ~~D~~~~L~~~~~~fDvV~lDP~y~ 175 (258)
T 2oyr_A 151 HASSLTALTDITPRPQVVYLDPMFP 175 (258)
T ss_dssp ESCHHHHSTTCSSCCSEEEECCCCC
T ss_pred ECCHHHHHHhCcccCCEEEEcCCCC
Confidence 9999987654445799999999984
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=98.96 E-value=1.3e-09 Score=107.65 Aligned_cols=100 Identities=9% Similarity=-0.068 Sum_probs=80.1
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHc--CC-CccEEEEcCccccccccCCCCCCEEE
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLH--QV-NSVIRTIHADLRTFADNSTVKCDKVL 411 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~--g~-~~~i~~~~~D~~~~~~~~~~~fD~Vl 411 (528)
.+.+|||+|||+|+.+..+++. + .+|+++|+++.+++.+++++... ++ +.+++++.+|+..+. ++||+|+
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~~--~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~----~~fD~Ii 144 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFKY--D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI----KKYDLIF 144 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTTS--S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC----CCEEEEE
T ss_pred CCCEEEEEeCCcCHHHHHHHhC--C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH----hhCCEEE
Confidence 4579999999999999998876 4 79999999999999998876431 12 236899999998865 5799999
Q ss_pred EcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCC
Q 009708 412 LDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 468 (528)
Q Consensus 412 ~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~ 468 (528)
+|.+- |. .+++.+.+.|+|||+++..+++.
T Consensus 145 ~d~~d---------p~------------------~~~~~~~~~L~pgG~lv~~~~~~ 174 (262)
T 2cmg_A 145 CLQEP---------DI------------------HRIDGLKRMLKEDGVFISVAKHP 174 (262)
T ss_dssp ESSCC---------CH------------------HHHHHHHTTEEEEEEEEEEEECT
T ss_pred ECCCC---------hH------------------HHHHHHHHhcCCCcEEEEEcCCc
Confidence 98432 11 15889999999999999876553
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=4.4e-09 Score=108.15 Aligned_cols=118 Identities=14% Similarity=0.153 Sum_probs=91.8
Q ss_pred HHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCC
Q 009708 325 GLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 404 (528)
Q Consensus 325 ~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~ 404 (528)
..+...++..++.+|||+|||+|..+..+++.. +..+++++|+ +.+++.++++++..|+.++++++++|+.+.. +
T Consensus 173 ~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~ 247 (360)
T 1tw3_A 173 DAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRA-PHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPL---P 247 (360)
T ss_dssp HHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCC---S
T ss_pred HHHHHhCCCccCcEEEEeCCcCcHHHHHHHHhC-CCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCCC---C
Confidence 344556667778899999999999999999875 4579999999 9999999999999998867999999987632 2
Q ss_pred CCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 405 ~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
..||+|++.... .. ....+ ..++|+++.+.|||||+|++.+..
T Consensus 248 ~~~D~v~~~~vl------~~-------~~~~~-------~~~~l~~~~~~L~pgG~l~i~e~~ 290 (360)
T 1tw3_A 248 RKADAIILSFVL------LN-------WPDHD-------AVRILTRCAEALEPGGRILIHERD 290 (360)
T ss_dssp SCEEEEEEESCG------GG-------SCHHH-------HHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CCccEEEEcccc------cC-------CCHHH-------HHHHHHHHHHhcCCCcEEEEEEEe
Confidence 359999974322 11 11121 135699999999999999987765
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=2.7e-10 Score=111.37 Aligned_cols=114 Identities=19% Similarity=0.130 Sum_probs=81.6
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCC---------------------------
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQV--------------------------- 385 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~--------------------------- 385 (528)
..++.+|||+|||+|..+..++.. . ..+|+++|+|+.+++.+++++...+.
T Consensus 54 ~~~~~~vLDlGcG~G~~~~~l~~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (265)
T 2i62_A 54 AVKGELLIDIGSGPTIYQLLSACE-S-FTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEK 131 (265)
T ss_dssp SCCEEEEEEESCTTCCGGGTTGGG-T-EEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHH
T ss_pred ccCCCEEEEECCCccHHHHHHhhc-c-cCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHH
Confidence 356789999999999999888764 1 24899999999999999998865431
Q ss_pred -CccE-EEEcCccccccccCC---CCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCE
Q 009708 386 -NSVI-RTIHADLRTFADNST---VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGV 460 (528)
Q Consensus 386 -~~~i-~~~~~D~~~~~~~~~---~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~ 460 (528)
..++ .++++|+........ ++||+|++.-.. ..+.........+|+++.++|||||+
T Consensus 132 l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l------------------~~~~~~~~~~~~~l~~~~~~LkpgG~ 193 (265)
T 2i62_A 132 LRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCL------------------DAACPDLPAYRTALRNLGSLLKPGGF 193 (265)
T ss_dssp HHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCH------------------HHHCSSHHHHHHHHHHHHTTEEEEEE
T ss_pred hhhhheeEEEeeeccCCCCCccccCCccEEEEhhhh------------------hhhcCChHHHHHHHHHHHhhCCCCcE
Confidence 1126 889999987643223 689999973211 10000012235679999999999999
Q ss_pred EEEEcC
Q 009708 461 LVYSTC 466 (528)
Q Consensus 461 LvysTc 466 (528)
|++++.
T Consensus 194 li~~~~ 199 (265)
T 2i62_A 194 LVMVDA 199 (265)
T ss_dssp EEEEEE
T ss_pred EEEEec
Confidence 998763
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.94 E-value=2e-09 Score=101.80 Aligned_cols=100 Identities=20% Similarity=0.175 Sum_probs=76.5
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDA 414 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~ 414 (528)
++.+|||+|||+|..+..+ +..+++++|+|+.+++.+++++ . .++++++|+..++. ..++||+|++..
T Consensus 36 ~~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a~~~~-----~-~~~~~~~d~~~~~~-~~~~fD~v~~~~ 103 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVGRRRA-----P-EATWVRAWGEALPF-PGESFDVVLLFT 103 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHHHHHC-----T-TSEEECCCTTSCCS-CSSCEEEEEEES
T ss_pred CCCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHHHHhC-----C-CcEEEEcccccCCC-CCCcEEEEEEcC
Confidence 7889999999999988766 2238999999999999998876 3 37889999987642 246899999753
Q ss_pred CCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCC
Q 009708 415 PCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 468 (528)
Q Consensus 415 Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~ 468 (528)
.. ...++ ...+|+++.++|||||++++++...
T Consensus 104 ~l------~~~~~----------------~~~~l~~~~~~L~pgG~l~i~~~~~ 135 (211)
T 2gs9_A 104 TL------EFVED----------------VERVLLEARRVLRPGGALVVGVLEA 135 (211)
T ss_dssp CT------TTCSC----------------HHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred hh------hhcCC----------------HHHHHHHHHHHcCCCCEEEEEecCC
Confidence 32 11111 1346899999999999999887543
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.94 E-value=3.9e-09 Score=117.31 Aligned_cols=119 Identities=13% Similarity=0.148 Sum_probs=89.1
Q ss_pred HHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHc------CCCccEEEEcCccccc
Q 009708 326 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLH------QVNSVIRTIHADLRTF 399 (528)
Q Consensus 326 l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~------g~~~~i~~~~~D~~~~ 399 (528)
.+...+...++.+|||+|||+|..+..+++..++..+|+|+|+|+.+++.++++++.. ++. +++++++|+..+
T Consensus 712 ~LLelL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~-nVefiqGDa~dL 790 (950)
T 3htx_A 712 YALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVK-SATLYDGSILEF 790 (950)
T ss_dssp HHHHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCS-EEEEEESCTTSC
T ss_pred HHHHHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCC-ceEEEECchHhC
Confidence 3445555567889999999999999999876323469999999999999999977643 555 499999999887
Q ss_pred cccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 400 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 400 ~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
+.. .+.||+|++. +++.+-++ .. ...+++.+.++|||| .++++|..
T Consensus 791 p~~-d~sFDlVV~~------eVLeHL~d-------p~-------l~~~L~eI~RvLKPG-~LIISTPN 836 (950)
T 3htx_A 791 DSR-LHDVDIGTCL------EVIEHMEE-------DQ-------ACEFGEKVLSLFHPK-LLIVSTPN 836 (950)
T ss_dssp CTT-SCSCCEEEEE------SCGGGSCH-------HH-------HHHHHHHHHHTTCCS-EEEEEECB
T ss_pred Ccc-cCCeeEEEEe------CchhhCCh-------HH-------HHHHHHHHHHHcCCC-EEEEEecC
Confidence 643 4689999973 22322221 11 234689999999999 88877754
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.94 E-value=2.8e-09 Score=108.45 Aligned_cols=119 Identities=15% Similarity=0.091 Sum_probs=90.8
Q ss_pred HHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCC
Q 009708 325 GLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 404 (528)
Q Consensus 325 ~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~ 404 (528)
..+...++..+ .+|||+|||+|..+..+++.. +..+++++|+ +.+++.+++++...|+.++++++.+|+.+. .+
T Consensus 158 ~~~~~~~~~~~-~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~ 231 (334)
T 2ip2_A 158 HEIPRLLDFRG-RSFVDVGGGSGELTKAILQAE-PSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQE---VP 231 (334)
T ss_dssp HHHHHHSCCTT-CEEEEETCTTCHHHHHHHHHC-TTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTTC---CC
T ss_pred HHHHHhCCCCC-CEEEEeCCCchHHHHHHHHHC-CCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCCC---CC
Confidence 33444455555 899999999999999999875 4579999999 999999999998888776799999999772 23
Q ss_pred CCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCC
Q 009708 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSID 469 (528)
Q Consensus 405 ~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~ 469 (528)
..||+|++.-.. .. +..... ..+|+++.+.|||||+|++......
T Consensus 232 ~~~D~v~~~~vl------~~-------~~~~~~-------~~~l~~~~~~L~pgG~l~i~e~~~~ 276 (334)
T 2ip2_A 232 SNGDIYLLSRII------GD-------LDEAAS-------LRLLGNCREAMAGDGRVVVIERTIS 276 (334)
T ss_dssp SSCSEEEEESCG------GG-------CCHHHH-------HHHHHHHHHHSCTTCEEEEEECCBC
T ss_pred CCCCEEEEchhc------cC-------CCHHHH-------HHHHHHHHHhcCCCCEEEEEEeccC
Confidence 579999963221 11 122222 4569999999999999998876543
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=6.5e-09 Score=105.76 Aligned_cols=114 Identities=13% Similarity=0.075 Sum_probs=88.1
Q ss_pred CCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEE
Q 009708 332 DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVL 411 (528)
Q Consensus 332 ~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl 411 (528)
+..++.+|||+|||+|..+..+++.. +..+++++|+ +.+++.+++++...++.++++++.+|+.... +..||+|+
T Consensus 166 ~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---p~~~D~v~ 240 (332)
T 3i53_A 166 DWAALGHVVDVGGGSGGLLSALLTAH-EDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFDPL---PAGAGGYV 240 (332)
T ss_dssp CCGGGSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCC---CCSCSEEE
T ss_pred CCCCCCEEEEeCCChhHHHHHHHHHC-CCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCCCC---CCCCcEEE
Confidence 34456799999999999999999875 4579999999 9999999999999998778999999997322 23799999
Q ss_pred EcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCc
Q 009708 412 LDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDP 470 (528)
Q Consensus 412 ~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~ 470 (528)
+-- ++.. +...+ ..++|+++.+.|||||+|++.......
T Consensus 241 ~~~------vlh~-------~~~~~-------~~~~l~~~~~~L~pgG~l~i~e~~~~~ 279 (332)
T 3i53_A 241 LSA------VLHD-------WDDLS-------AVAILRRCAEAAGSGGVVLVIEAVAGD 279 (332)
T ss_dssp EES------CGGG-------SCHHH-------HHHHHHHHHHHHTTTCEEEEEECCCC-
T ss_pred Eeh------hhcc-------CCHHH-------HHHHHHHHHHhcCCCCEEEEEeecCCC
Confidence 631 1211 12222 345699999999999999987765543
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=98.91 E-value=4.1e-09 Score=99.67 Aligned_cols=115 Identities=17% Similarity=0.213 Sum_probs=86.0
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCC--CccEEEEcCccccc-------------
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQV--NSVIRTIHADLRTF------------- 399 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~--~~~i~~~~~D~~~~------------- 399 (528)
+..+||++|| |.-|+.+|+. . +++|+++|.+++..+.+++++++.|+ .++|+++.+|+...
T Consensus 30 ~a~~VLEiGt--GySTl~lA~~-~-~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~ 105 (202)
T 3cvo_A 30 EAEVILEYGS--GGSTVVAAEL-P-GKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWR 105 (202)
T ss_dssp HCSEEEEESC--SHHHHHHHTS-T-TCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGG
T ss_pred CCCEEEEECc--hHHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhh
Confidence 4679999998 5778888863 3 68999999999999999999999998 77799999996542
Q ss_pred --cc-------c-CCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCC
Q 009708 400 --AD-------N-STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSID 469 (528)
Q Consensus 400 --~~-------~-~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~ 469 (528)
.. . ..+.||+||+|+... ...+..+..+|+|||+|++-.....
T Consensus 106 ~l~~~~~~i~~~~~~~~fDlIfIDg~k~---------------------------~~~~~~~l~~l~~GG~Iv~DNv~~r 158 (202)
T 3cvo_A 106 SYPDYPLAVWRTEGFRHPDVVLVDGRFR---------------------------VGCALATAFSITRPVTLLFDDYSQR 158 (202)
T ss_dssp GTTHHHHGGGGCTTCCCCSEEEECSSSH---------------------------HHHHHHHHHHCSSCEEEEETTGGGC
T ss_pred hHHHHhhhhhccccCCCCCEEEEeCCCc---------------------------hhHHHHHHHhcCCCeEEEEeCCcCC
Confidence 10 1 126799999997640 0235557799999999987654433
Q ss_pred chhhHHHHHHHHh
Q 009708 470 PEENEERVEAFLL 482 (528)
Q Consensus 470 ~~Ene~~v~~~l~ 482 (528)
+. ...+..|+.
T Consensus 159 ~~--y~~v~~~~~ 169 (202)
T 3cvo_A 159 RW--QHQVEEFLG 169 (202)
T ss_dssp SS--GGGGHHHHC
T ss_pred cc--hHHHHHHHh
Confidence 32 234567776
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=3.2e-09 Score=106.07 Aligned_cols=113 Identities=11% Similarity=0.041 Sum_probs=76.9
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHc---CCCcEE--EEEcCChHHHHHHHHHHHHc-CCCc-cEEEEcCccccccc----
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCL---SGQGLV--YAIDINKGRLRILNETAKLH-QVNS-VIRTIHADLRTFAD---- 401 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~---~~~~~v--~avD~s~~~l~~~~~n~~~~-g~~~-~i~~~~~D~~~~~~---- 401 (528)
+.++.+|||+|||+|..+..++..+ .+...| +++|.|+.+++.+++++... ++.+ .+.+..+|+.++..
T Consensus 50 ~~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 129 (292)
T 2aot_A 50 TKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLE 129 (292)
T ss_dssp TCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHT
T ss_pred CCCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhcc
Confidence 3567799999999998876554332 134544 99999999999999998764 5554 13445667655431
Q ss_pred -cCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 402 -NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 402 -~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
...++||+|++--- +..-+| ....|+++.++|||||+|++++.+
T Consensus 130 ~~~~~~fD~V~~~~~------l~~~~d----------------~~~~l~~~~r~LkpgG~l~i~~~~ 174 (292)
T 2aot_A 130 KKELQKWDFIHMIQM------LYYVKD----------------IPATLKFFHSLLGTNAKMLIIVVS 174 (292)
T ss_dssp TTCCCCEEEEEEESC------GGGCSC----------------HHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred ccCCCceeEEEEeee------eeecCC----------------HHHHHHHHHHHcCCCcEEEEEEec
Confidence 12468999996321 111111 123599999999999999987544
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=98.90 E-value=1.8e-09 Score=105.94 Aligned_cols=108 Identities=14% Similarity=0.161 Sum_probs=79.7
Q ss_pred HHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCC
Q 009708 326 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 405 (528)
Q Consensus 326 l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~ 405 (528)
++...+. ++.+|||+|||+|..+..+++. +.+|+++|+|+.+++.++++.. .+ ++++|+..++. ..+
T Consensus 47 ~l~~~~~--~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~----~~---~~~~d~~~~~~-~~~ 113 (260)
T 2avn_A 47 FLEEYLK--NPCRVLDLGGGTGKWSLFLQER---GFEVVLVDPSKEMLEVAREKGV----KN---VVEAKAEDLPF-PSG 113 (260)
T ss_dssp HHHHHCC--SCCEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHHTC----SC---EEECCTTSCCS-CTT
T ss_pred HHHHhcC--CCCeEEEeCCCcCHHHHHHHHc---CCeEEEEeCCHHHHHHHHhhcC----CC---EEECcHHHCCC-CCC
Confidence 3444443 6789999999999999999875 4689999999999999988753 22 67888877652 246
Q ss_pred CCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 406 ~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
+||+|++..... .+......+|+++.++|||||+|++++.+
T Consensus 114 ~fD~v~~~~~~~---------------------~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 154 (260)
T 2avn_A 114 AFEAVLALGDVL---------------------SYVENKDKAFSEIRRVLVPDGLLIATVDN 154 (260)
T ss_dssp CEEEEEECSSHH---------------------HHCSCHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred CEEEEEEcchhh---------------------hccccHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 899999743220 00001345699999999999999987765
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.87 E-value=2.8e-09 Score=104.81 Aligned_cols=87 Identities=17% Similarity=0.219 Sum_probs=72.4
Q ss_pred hHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc
Q 009708 323 SAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 402 (528)
Q Consensus 323 ~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~ 402 (528)
....++..+++.++++|||+|||+|..|..+++. .++|+|+|+|+.+++.+++++.. .. +++++++|+..+...
T Consensus 17 i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avEid~~~~~~~~~~~~~--~~-~v~~i~~D~~~~~~~ 90 (255)
T 3tqs_A 17 VLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTE---CDNLALVEIDRDLVAFLQKKYNQ--QK-NITIYQNDALQFDFS 90 (255)
T ss_dssp HHHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTT---SSEEEEEECCHHHHHHHHHHHTT--CT-TEEEEESCTTTCCGG
T ss_pred HHHHHHHhcCCCCcCEEEEEcccccHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHhh--CC-CcEEEEcchHhCCHH
Confidence 4556777888889999999999999999999875 47999999999999999999865 23 489999999887532
Q ss_pred C---CCCCCEEEEcCCC
Q 009708 403 S---TVKCDKVLLDAPC 416 (528)
Q Consensus 403 ~---~~~fD~Vl~D~Pc 416 (528)
. ..+|| |+.|+|+
T Consensus 91 ~~~~~~~~~-vv~NlPY 106 (255)
T 3tqs_A 91 SVKTDKPLR-VVGNLPY 106 (255)
T ss_dssp GSCCSSCEE-EEEECCH
T ss_pred HhccCCCeE-EEecCCc
Confidence 2 24677 9999998
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.85 E-value=7.1e-09 Score=101.17 Aligned_cols=94 Identities=14% Similarity=0.187 Sum_probs=75.1
Q ss_pred eEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcc
Q 009708 317 CAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL 396 (528)
Q Consensus 317 ~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~ 396 (528)
|.++......++..+++.++++|||+|||+|..|..+++. .++|+|+|+|+.+++.++++++.. + +++++++|+
T Consensus 12 fl~d~~~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~--~-~v~~~~~D~ 85 (244)
T 1qam_A 12 FITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQR---CNFVTAIEIDHKLCKTTENKLVDH--D-NFQVLNKDI 85 (244)
T ss_dssp BCCCHHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEECSCHHHHHHHHHHTTTC--C-SEEEECCCG
T ss_pred ccCCHHHHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHc---CCeEEEEECCHHHHHHHHHhhccC--C-CeEEEEChH
Confidence 3444555566777788888999999999999999999987 379999999999999999987642 3 489999999
Q ss_pred ccccccCCCCCCEEEEcCCCC
Q 009708 397 RTFADNSTVKCDKVLLDAPCS 417 (528)
Q Consensus 397 ~~~~~~~~~~fD~Vl~D~Pcs 417 (528)
.++.......| .|++|+|+.
T Consensus 86 ~~~~~~~~~~~-~vv~nlPy~ 105 (244)
T 1qam_A 86 LQFKFPKNQSY-KIFGNIPYN 105 (244)
T ss_dssp GGCCCCSSCCC-EEEEECCGG
T ss_pred HhCCcccCCCe-EEEEeCCcc
Confidence 88753322345 689999983
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=5e-09 Score=103.90 Aligned_cols=88 Identities=16% Similarity=0.163 Sum_probs=73.1
Q ss_pred chHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccc
Q 009708 322 ESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD 401 (528)
Q Consensus 322 ~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~ 401 (528)
.....++..+++.++ +|||+|||+|..|..+++. .++|+|+|+|+.+++.+++++.. .+++++++|+..+..
T Consensus 34 ~i~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~---~~~V~avEid~~~~~~l~~~~~~----~~v~vi~~D~l~~~~ 105 (271)
T 3fut_A 34 AHLRRIVEAARPFTG-PVFEVGPGLGALTRALLEA---GAEVTAIEKDLRLRPVLEETLSG----LPVRLVFQDALLYPW 105 (271)
T ss_dssp HHHHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHT---TCCEEEEESCGGGHHHHHHHTTT----SSEEEEESCGGGSCG
T ss_pred HHHHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHc---CCEEEEEECCHHHHHHHHHhcCC----CCEEEEECChhhCCh
Confidence 345567777888889 9999999999999999986 36899999999999999998752 348999999988754
Q ss_pred cCCCCCCEEEEcCCCC
Q 009708 402 NSTVKCDKVLLDAPCS 417 (528)
Q Consensus 402 ~~~~~fD~Vl~D~Pcs 417 (528)
.....+|.|+.|+|+.
T Consensus 106 ~~~~~~~~iv~NlPy~ 121 (271)
T 3fut_A 106 EEVPQGSLLVANLPYH 121 (271)
T ss_dssp GGSCTTEEEEEEECSS
T ss_pred hhccCccEEEecCccc
Confidence 3223689999999994
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=98.84 E-value=5e-09 Score=103.01 Aligned_cols=97 Identities=16% Similarity=0.170 Sum_probs=76.7
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEc
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLD 413 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D 413 (528)
.++.+|||+|||+|..+..+++.+ ++.+|+++|+++.+++.++++. . .+.++.+|+..++. ..++||+|++.
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~-----~-~~~~~~~d~~~~~~-~~~~fD~v~~~ 155 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADAL-PEITTFGLDVSKVAIKAAAKRY-----P-QVTFCVASSHRLPF-SDTSMDAIIRI 155 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTC-TTSEEEEEESCHHHHHHHHHHC-----T-TSEEEECCTTSCSB-CTTCEEEEEEE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHhC-----C-CcEEEEcchhhCCC-CCCceeEEEEe
Confidence 568899999999999999999875 3569999999999999988763 2 36788999877542 23689999963
Q ss_pred CCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 414 APCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 414 ~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
... ..++++.++|||||+|++.+..
T Consensus 156 ~~~-----------------------------~~l~~~~~~L~pgG~l~~~~~~ 180 (269)
T 1p91_A 156 YAP-----------------------------CKAEELARVVKPGGWVITATPG 180 (269)
T ss_dssp SCC-----------------------------CCHHHHHHHEEEEEEEEEEEEC
T ss_pred CCh-----------------------------hhHHHHHHhcCCCcEEEEEEcC
Confidence 221 0277889999999999987654
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=98.83 E-value=3.6e-09 Score=105.37 Aligned_cols=111 Identities=18% Similarity=0.162 Sum_probs=73.2
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHc-----------------CCC-----------
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLH-----------------QVN----------- 386 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~-----------------g~~----------- 386 (528)
++.+|||+|||+|..+..++. ....+|+|+|+|+.+++.++++++.. |..
T Consensus 71 ~~~~vLDiGcG~G~~~~l~~~--~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 148 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQLLSAC--SHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR 148 (289)
T ss_dssp CCSEEEEETCTTCCGGGTTGG--GGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHH
T ss_pred CCCeEEEECCCcChHHHHhhc--cCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHH
Confidence 678999999999994433332 23469999999999999998866431 100
Q ss_pred -ccEEEEcCccccccc-----cCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCE
Q 009708 387 -SVIRTIHADLRTFAD-----NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGV 460 (528)
Q Consensus 387 -~~i~~~~~D~~~~~~-----~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~ 460 (528)
..++++++|+....+ ...++||+|++.... ..+..-......+|+++.++|||||+
T Consensus 149 ~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l------------------~~~~~~~~~~~~~l~~~~r~LkpGG~ 210 (289)
T 2g72_A 149 ARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCL------------------EAVSPDLASFQRALDHITTLLRPGGH 210 (289)
T ss_dssp HHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCH------------------HHHCSSHHHHHHHHHHHHTTEEEEEE
T ss_pred hhhceEEecccCCCCCccccccCCCCCCEEEehhhh------------------hhhcCCHHHHHHHHHHHHHhcCCCCE
Confidence 125677788877221 113569999974211 11000012235579999999999999
Q ss_pred EEEEc
Q 009708 461 LVYST 465 (528)
Q Consensus 461 LvysT 465 (528)
|+++.
T Consensus 211 l~~~~ 215 (289)
T 2g72_A 211 LLLIG 215 (289)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99763
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=98.82 E-value=6.3e-08 Score=96.08 Aligned_cols=110 Identities=15% Similarity=0.090 Sum_probs=79.6
Q ss_pred CCCeEEEeCCcc---chHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccc----------
Q 009708 335 PGQSIVDCCAAP---GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD---------- 401 (528)
Q Consensus 335 ~g~~VLDl~aG~---G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~---------- 401 (528)
+..+|||+|||+ |..+..+.+. .+..+|+++|+|+.+++.+++++.. ..+++++++|+.+...
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~-~p~~~v~~vD~sp~~l~~Ar~~~~~---~~~v~~~~~D~~~~~~~~~~~~~~~~ 152 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSV-NPDARVVYVDIDPMVLTHGRALLAK---DPNTAVFTADVRDPEYILNHPDVRRM 152 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHH-CTTCEEEEEESSHHHHHHHHHHHTT---CTTEEEEECCTTCHHHHHHSHHHHHH
T ss_pred CCCEEEEECCCCCCCChHHHHHHHh-CCCCEEEEEECChHHHHHHHHhcCC---CCCeEEEEeeCCCchhhhccchhhcc
Confidence 347999999999 9877655554 4568999999999999999998843 2358999999976421
Q ss_pred cCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCC
Q 009708 402 NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 468 (528)
Q Consensus 402 ~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~ 468 (528)
....+||.|++. +++..-++ .+. ..+|+++.+.|+|||+|++++...
T Consensus 153 ~d~~~~d~v~~~------~vlh~~~d-------~~~-------~~~l~~~~~~L~pGG~l~i~~~~~ 199 (274)
T 2qe6_A 153 IDFSRPAAIMLV------GMLHYLSP-------DVV-------DRVVGAYRDALAPGSYLFMTSLVD 199 (274)
T ss_dssp CCTTSCCEEEET------TTGGGSCT-------TTH-------HHHHHHHHHHSCTTCEEEEEEEBC
T ss_pred CCCCCCEEEEEe------chhhhCCc-------HHH-------HHHHHHHHHhCCCCcEEEEEEecC
Confidence 112479999863 22222221 112 346999999999999999887654
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=98.81 E-value=1.3e-08 Score=97.08 Aligned_cols=94 Identities=13% Similarity=0.118 Sum_probs=71.8
Q ss_pred CCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAP 415 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~P 415 (528)
+.+|||+|||+|..+..++.. +++|+++.+++.++++ .++++++|+..++. ..++||+|++...
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~-------~~vD~s~~~~~~a~~~--------~~~~~~~d~~~~~~-~~~~fD~v~~~~~ 111 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK-------IGVEPSERMAEIARKR--------GVFVLKGTAENLPL-KDESFDFALMVTT 111 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC-------EEEESCHHHHHHHHHT--------TCEEEECBTTBCCS-CTTCEEEEEEESC
T ss_pred CCcEEEeCCCCCHHHHHHHHH-------hccCCCHHHHHHHHhc--------CCEEEEcccccCCC-CCCCeeEEEEcch
Confidence 779999999999998877531 9999999999998876 26788899877642 2468999997532
Q ss_pred CCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 416 CSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 416 csg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
. ...++ ...+|+.+.++|+|||.+++++..
T Consensus 112 l------~~~~~----------------~~~~l~~~~~~L~pgG~l~i~~~~ 141 (219)
T 1vlm_A 112 I------CFVDD----------------PERALKEAYRILKKGGYLIVGIVD 141 (219)
T ss_dssp G------GGSSC----------------HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred H------hhccC----------------HHHHHHHHHHHcCCCcEEEEEEeC
Confidence 2 11111 134689999999999999987654
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.3e-08 Score=101.59 Aligned_cols=98 Identities=23% Similarity=0.216 Sum_probs=69.3
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc-CC-CCCCEEEE
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-ST-VKCDKVLL 412 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~-~~-~~fD~Vl~ 412 (528)
+|.+|||+|||||++|..+++. +.++|+|+|+++.+++.+.++ . ...+.+...|+..+... .+ ..||.|++
T Consensus 85 ~g~~vLDiGcGTG~~t~~L~~~--ga~~V~aVDvs~~mL~~a~r~----~-~rv~~~~~~ni~~l~~~~l~~~~fD~v~~ 157 (291)
T 3hp7_A 85 EDMITIDIGASTGGFTDVMLQN--GAKLVYAVDVGTNQLVWKLRQ----D-DRVRSMEQYNFRYAEPVDFTEGLPSFASI 157 (291)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT--TCSEEEEECSSSSCSCHHHHT----C-TTEEEECSCCGGGCCGGGCTTCCCSEEEE
T ss_pred cccEEEecCCCccHHHHHHHhC--CCCEEEEEECCHHHHHHHHHh----C-cccceecccCceecchhhCCCCCCCEEEE
Confidence 5779999999999999999885 457999999999999874332 1 11122223444443321 12 34999999
Q ss_pred cCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 413 DAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 413 D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
|...... ..+|..+.++|||||.|+..
T Consensus 158 d~sf~sl-------------------------~~vL~e~~rvLkpGG~lv~l 184 (291)
T 3hp7_A 158 DVSFISL-------------------------NLILPALAKILVDGGQVVAL 184 (291)
T ss_dssp CCSSSCG-------------------------GGTHHHHHHHSCTTCEEEEE
T ss_pred EeeHhhH-------------------------HHHHHHHHHHcCcCCEEEEE
Confidence 9765321 23588999999999999976
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=98.81 E-value=6.6e-09 Score=98.80 Aligned_cols=107 Identities=13% Similarity=0.131 Sum_probs=78.5
Q ss_pred HHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc-CCC
Q 009708 327 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STV 405 (528)
Q Consensus 327 ~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~-~~~ 405 (528)
+...+. .++.+|||+|||+|..+..+++. ..+++++|+++.+++.++++. .+++++|+...... ..+
T Consensus 25 l~~~~~-~~~~~vLdiG~G~G~~~~~l~~~---~~~~~~~D~~~~~~~~~~~~~--------~~~~~~d~~~~~~~~~~~ 92 (230)
T 3cc8_A 25 LLKHIK-KEWKEVLDIGCSSGALGAAIKEN---GTRVSGIEAFPEAAEQAKEKL--------DHVVLGDIETMDMPYEEE 92 (230)
T ss_dssp HHTTCC-TTCSEEEEETCTTSHHHHHHHTT---TCEEEEEESSHHHHHHHHTTS--------SEEEESCTTTCCCCSCTT
T ss_pred HHHHhc-cCCCcEEEeCCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHhC--------CcEEEcchhhcCCCCCCC
Confidence 344444 57889999999999999999876 379999999999999887653 25778888764222 246
Q ss_pred CCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 406 ~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
+||+|++.... ...++ ...+++.+.++|+|||++++++..
T Consensus 93 ~fD~v~~~~~l------~~~~~----------------~~~~l~~~~~~L~~gG~l~~~~~~ 132 (230)
T 3cc8_A 93 QFDCVIFGDVL------EHLFD----------------PWAVIEKVKPYIKQNGVILASIPN 132 (230)
T ss_dssp CEEEEEEESCG------GGSSC----------------HHHHHHHTGGGEEEEEEEEEEEEC
T ss_pred ccCEEEECChh------hhcCC----------------HHHHHHHHHHHcCCCCEEEEEeCC
Confidence 89999974322 21111 125699999999999999987643
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=98.79 E-value=3.9e-09 Score=102.30 Aligned_cols=98 Identities=19% Similarity=0.223 Sum_probs=68.1
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccc-ccCCC-CCCEEEE
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA-DNSTV-KCDKVLL 412 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~-~~~~~-~fD~Vl~ 412 (528)
+|.+|||+|||+|+.+..+++. +..+|+|+|+|+.+++.++++..+.. .....++.... ..... .||.+.+
T Consensus 37 ~g~~VLDiGcGtG~~t~~la~~--g~~~V~gvDis~~ml~~a~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~d~~~~ 109 (232)
T 3opn_A 37 NGKTCLDIGSSTGGFTDVMLQN--GAKLVYALDVGTNQLAWKIRSDERVV-----VMEQFNFRNAVLADFEQGRPSFTSI 109 (232)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT--TCSEEEEECSSCCCCCHHHHTCTTEE-----EECSCCGGGCCGGGCCSCCCSEEEE
T ss_pred CCCEEEEEccCCCHHHHHHHhc--CCCEEEEEcCCHHHHHHHHHhCcccc-----ccccceEEEeCHhHcCcCCCCEEEE
Confidence 4679999999999999999986 34599999999999998766533221 11112222211 11112 3788888
Q ss_pred cCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 413 DAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 413 D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
|...+.. ..+|..+.++|||||.+++.
T Consensus 110 D~v~~~l-------------------------~~~l~~i~rvLkpgG~lv~~ 136 (232)
T 3opn_A 110 DVSFISL-------------------------DLILPPLYEILEKNGEVAAL 136 (232)
T ss_dssp CCSSSCG-------------------------GGTHHHHHHHSCTTCEEEEE
T ss_pred EEEhhhH-------------------------HHHHHHHHHhccCCCEEEEE
Confidence 8777531 23589999999999999975
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=8.9e-09 Score=106.61 Aligned_cols=100 Identities=22% Similarity=0.191 Sum_probs=74.9
Q ss_pred CCCeEEEeCCc------cchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc-----C
Q 009708 335 PGQSIVDCCAA------PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-----S 403 (528)
Q Consensus 335 ~g~~VLDl~aG------~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~-----~ 403 (528)
++.+|||+||| +|+.++.+++...+.++|+|+|+|+.+. ... .+++++++|+.+++.. .
T Consensus 216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~---------~~~-~rI~fv~GDa~dlpf~~~l~~~ 285 (419)
T 3sso_A 216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH---------VDE-LRIRTIQGDQNDAEFLDRIARR 285 (419)
T ss_dssp SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG---------GCB-TTEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh---------hcC-CCcEEEEecccccchhhhhhcc
Confidence 45799999999 7888888887654578999999999972 122 3599999999875422 0
Q ss_pred CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 404 ~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
.++||+|++|.-. . ...+...|++++++|||||++++.+..
T Consensus 286 d~sFDlVisdgsH--------~---------------~~d~~~aL~el~rvLKPGGvlVi~Dl~ 326 (419)
T 3sso_A 286 YGPFDIVIDDGSH--------I---------------NAHVRTSFAALFPHVRPGGLYVIEDMW 326 (419)
T ss_dssp HCCEEEEEECSCC--------C---------------HHHHHHHHHHHGGGEEEEEEEEEECGG
T ss_pred cCCccEEEECCcc--------c---------------chhHHHHHHHHHHhcCCCeEEEEEecc
Confidence 3689999986321 0 012355799999999999999987654
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=2e-08 Score=99.67 Aligned_cols=109 Identities=18% Similarity=0.179 Sum_probs=76.3
Q ss_pred CCeEEEeCCccch----HHHHHHHHcCC---CcEEEEEcCChHHHHHHHHHHH--------------H---------cC-
Q 009708 336 GQSIVDCCAAPGG----KTLYMASCLSG---QGLVYAIDINKGRLRILNETAK--------------L---------HQ- 384 (528)
Q Consensus 336 g~~VLDl~aG~G~----kt~~la~~~~~---~~~v~avD~s~~~l~~~~~n~~--------------~---------~g- 384 (528)
+.+|||+|||+|. .++.+++.++. +.+|+|+|+|+.+++.|++++. + .|
T Consensus 106 ~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~~ 185 (274)
T 1af7_A 106 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGL 185 (274)
T ss_dssp CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSE
T ss_pred CcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCCc
Confidence 4689999999998 55666665442 3589999999999999998741 0 01
Q ss_pred ------CCccEEEEcCccccccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCC
Q 009708 385 ------VNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPG 458 (528)
Q Consensus 385 ------~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpG 458 (528)
+...|++.++|+.+.+....++||+|+|- . ++.. .++ ..|.+++....+.|+||
T Consensus 186 ~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~cr----n--vliy-------f~~-------~~~~~vl~~~~~~L~pg 245 (274)
T 1af7_A 186 VRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCR----N--VMIY-------FDK-------TTQEDILRRFVPLLKPD 245 (274)
T ss_dssp EEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEEC----S--SGGG-------SCH-------HHHHHHHHHHGGGEEEE
T ss_pred eeechhhcccCeEEecccCCCCCCcCCCeeEEEEC----C--chHh-------CCH-------HHHHHHHHHHHHHhCCC
Confidence 01258999999987322113679999971 1 1111 111 23577899999999999
Q ss_pred CEEEEE
Q 009708 459 GVLVYS 464 (528)
Q Consensus 459 G~Lvys 464 (528)
|+|+..
T Consensus 246 G~L~lg 251 (274)
T 1af7_A 246 GLLFAG 251 (274)
T ss_dssp EEEEEC
T ss_pred cEEEEE
Confidence 999863
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=98.72 E-value=3.5e-08 Score=101.20 Aligned_cols=116 Identities=13% Similarity=0.101 Sum_probs=82.8
Q ss_pred HHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCC
Q 009708 326 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 405 (528)
Q Consensus 326 l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~ 405 (528)
.+...++..++.+|||+|||+|..+..+++.. +..+++++|+ +..+. +++++..+..++++++.+|+.... +
T Consensus 175 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~--~~~~~~~~~~~~v~~~~~d~~~~~---p- 246 (348)
T 3lst_A 175 ILARAGDFPATGTVADVGGGRGGFLLTVLREH-PGLQGVLLDR-AEVVA--RHRLDAPDVAGRWKVVEGDFLREV---P- 246 (348)
T ss_dssp HHHHHSCCCSSEEEEEETCTTSHHHHHHHHHC-TTEEEEEEEC-HHHHT--TCCCCCGGGTTSEEEEECCTTTCC---C-
T ss_pred HHHHhCCccCCceEEEECCccCHHHHHHHHHC-CCCEEEEecC-HHHhh--cccccccCCCCCeEEEecCCCCCC---C-
Confidence 44555667778899999999999999999875 4678999999 44444 444444566667999999997322 2
Q ss_pred CCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCC
Q 009708 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSID 469 (528)
Q Consensus 406 ~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~ 469 (528)
.||+|++.- ++.. +...+. ..+|+++.+.|||||+|++.+....
T Consensus 247 ~~D~v~~~~------vlh~-------~~d~~~-------~~~L~~~~~~LkpgG~l~i~e~~~~ 290 (348)
T 3lst_A 247 HADVHVLKR------ILHN-------WGDEDS-------VRILTNCRRVMPAHGRVLVIDAVVP 290 (348)
T ss_dssp CCSEEEEES------CGGG-------SCHHHH-------HHHHHHHHHTCCTTCEEEEEECCBC
T ss_pred CCcEEEEeh------hccC-------CCHHHH-------HHHHHHHHHhcCCCCEEEEEEeccC
Confidence 799999732 1211 122222 3569999999999999998776543
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.70 E-value=3.2e-08 Score=98.53 Aligned_cols=90 Identities=17% Similarity=0.235 Sum_probs=70.9
Q ss_pred chHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCC-CcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccc
Q 009708 322 ESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400 (528)
Q Consensus 322 ~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~-~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~ 400 (528)
.....++..+++.++++|||+|||+|..|..+++.... .++|+|+|+|+.+++.++++. ..+++++++|+..+.
T Consensus 29 ~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~-----~~~v~~i~~D~~~~~ 103 (279)
T 3uzu_A 29 GVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF-----GELLELHAGDALTFD 103 (279)
T ss_dssp HHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH-----GGGEEEEESCGGGCC
T ss_pred HHHHHHHHhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc-----CCCcEEEECChhcCC
Confidence 34456677788889999999999999999999987432 245999999999999999983 235899999998865
Q ss_pred ccC-CC----CCCEEEEcCCC
Q 009708 401 DNS-TV----KCDKVLLDAPC 416 (528)
Q Consensus 401 ~~~-~~----~fD~Vl~D~Pc 416 (528)
... .. ..+.|+.|+|+
T Consensus 104 ~~~~~~~~~~~~~~vv~NlPY 124 (279)
T 3uzu_A 104 FGSIARPGDEPSLRIIGNLPY 124 (279)
T ss_dssp GGGGSCSSSSCCEEEEEECCH
T ss_pred hhHhcccccCCceEEEEccCc
Confidence 321 11 34579999998
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=4.5e-08 Score=96.72 Aligned_cols=113 Identities=12% Similarity=0.025 Sum_probs=80.0
Q ss_pred CCeEEEeCCcc--chHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc-----CCCCCC
Q 009708 336 GQSIVDCCAAP--GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-----STVKCD 408 (528)
Q Consensus 336 g~~VLDl~aG~--G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~-----~~~~fD 408 (528)
...|||+|||+ |+.+..+++...+..+|+++|.|+.++..++.++...+. .+++++++|+.+.... ....||
T Consensus 79 ~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~-~~~~~v~aD~~~~~~~l~~~~~~~~~D 157 (277)
T 3giw_A 79 IRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPE-GRTAYVEADMLDPASILDAPELRDTLD 157 (277)
T ss_dssp CCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSS-SEEEEEECCTTCHHHHHTCHHHHTTCC
T ss_pred CCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCC-CcEEEEEecccChhhhhcccccccccC
Confidence 36899999997 666777777666788999999999999999988865433 3589999999886310 013354
Q ss_pred -----EEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCC
Q 009708 409 -----KVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 468 (528)
Q Consensus 409 -----~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~ 468 (528)
.|+++ +++..-++ ..+ ...++....+.|+|||+|++++.+-
T Consensus 158 ~~~p~av~~~------avLH~l~d------~~~-------p~~~l~~l~~~L~PGG~Lvls~~~~ 203 (277)
T 3giw_A 158 LTRPVALTVI------AIVHFVLD------EDD-------AVGIVRRLLEPLPSGSYLAMSIGTA 203 (277)
T ss_dssp TTSCCEEEEE------SCGGGSCG------GGC-------HHHHHHHHHTTSCTTCEEEEEEECC
T ss_pred cCCcchHHhh------hhHhcCCc------hhh-------HHHHHHHHHHhCCCCcEEEEEeccC
Confidence 45542 33333222 111 1346899999999999999987654
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.69 E-value=2.9e-08 Score=97.21 Aligned_cols=93 Identities=17% Similarity=0.210 Sum_probs=71.9
Q ss_pred EeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccc
Q 009708 318 AVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 397 (528)
Q Consensus 318 ~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~ 397 (528)
..+......++..+.+.++++|||+|||+|..|..+++. +..+|+|+|+|+.+++.++++ +.. +++++++|+.
T Consensus 14 l~d~~i~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~--~~~~v~avEid~~~~~~~~~~----~~~-~v~~i~~D~~ 86 (249)
T 3ftd_A 14 LVSEGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQH--PLKKLYVIELDREMVENLKSI----GDE-RLEVINEDAS 86 (249)
T ss_dssp EECHHHHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTS--CCSEEEEECCCHHHHHHHTTS----CCT-TEEEECSCTT
T ss_pred cCCHHHHHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHc--CCCeEEEEECCHHHHHHHHhc----cCC-CeEEEEcchh
Confidence 333444566777788888999999999999999999875 347999999999999999887 223 4899999998
Q ss_pred cccccCCCCCCEEEEcCCCC
Q 009708 398 TFADNSTVKCDKVLLDAPCS 417 (528)
Q Consensus 398 ~~~~~~~~~fD~Vl~D~Pcs 417 (528)
.+..........|+.|+|+.
T Consensus 87 ~~~~~~~~~~~~vv~NlPy~ 106 (249)
T 3ftd_A 87 KFPFCSLGKELKVVGNLPYN 106 (249)
T ss_dssp TCCGGGSCSSEEEEEECCTT
T ss_pred hCChhHccCCcEEEEECchh
Confidence 86533211134899999994
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=2.3e-08 Score=96.61 Aligned_cols=103 Identities=19% Similarity=0.191 Sum_probs=68.6
Q ss_pred CCCCCeEEEeCCccchHHHHHHHH--cCC-CcEEEEEcC--ChHHHHHHHHHHHHcCCCccEEEEcC-ccccccccCCCC
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASC--LSG-QGLVYAIDI--NKGRLRILNETAKLHQVNSVIRTIHA-DLRTFADNSTVK 406 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~--~~~-~~~v~avD~--s~~~l~~~~~n~~~~g~~~~i~~~~~-D~~~~~~~~~~~ 406 (528)
++||.+|||||||||+++..++++ ++. .|.++|+|+ .|-... -.|+ +.+++.++ |++.+. +.+
T Consensus 71 ikpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~~~~-------~~Gv-~~i~~~~G~Df~~~~---~~~ 139 (269)
T 2px2_A 71 VQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLMQ-------SYGW-NIVTMKSGVDVFYKP---SEI 139 (269)
T ss_dssp CCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCCCCC-------STTG-GGEEEECSCCGGGSC---CCC
T ss_pred CCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCCccc-------CCCc-eEEEeeccCCccCCC---CCC
Confidence 578999999999999999999986 322 356777773 221100 0122 23566667 998744 357
Q ss_pred CCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCC-EEE
Q 009708 407 CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG-VLV 462 (528)
Q Consensus 407 fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG-~Lv 462 (528)
+|+||+|...+ +|. ..+++...+. .|+-|.++|+||| .++
T Consensus 140 ~DvVLSDMAPn-SG~-------------~~vD~~Rs~~--aL~~A~~~Lk~gG~~Fv 180 (269)
T 2px2_A 140 SDTLLCDIGES-SPS-------------AEIEEQRTLR--ILEMVSDWLSRGPKEFC 180 (269)
T ss_dssp CSEEEECCCCC-CSC-------------HHHHHHHHHH--HHHHHHHHHTTCCSEEE
T ss_pred CCEEEeCCCCC-CCc-------------cHHHHHHHHH--HHHHHHHHhhcCCcEEE
Confidence 99999995444 665 2233222222 6788889999999 887
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.67 E-value=3.8e-08 Score=93.23 Aligned_cols=116 Identities=15% Similarity=0.129 Sum_probs=79.2
Q ss_pred HHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCC
Q 009708 328 VAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC 407 (528)
Q Consensus 328 ~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~f 407 (528)
..+....++.+|||+|||+|..+..++ .+|+++|+++. .++++++|+..++. ..++|
T Consensus 60 ~~l~~~~~~~~vLDiG~G~G~~~~~l~------~~v~~~D~s~~----------------~~~~~~~d~~~~~~-~~~~f 116 (215)
T 2zfu_A 60 RDLRQRPASLVVADFGCGDCRLASSIR------NPVHCFDLASL----------------DPRVTVCDMAQVPL-EDESV 116 (215)
T ss_dssp HHHHTSCTTSCEEEETCTTCHHHHHCC------SCEEEEESSCS----------------STTEEESCTTSCSC-CTTCE
T ss_pred HHHhccCCCCeEEEECCcCCHHHHHhh------ccEEEEeCCCC----------------CceEEEeccccCCC-CCCCE
Confidence 333334567899999999999887662 57999999988 14577888877542 24679
Q ss_pred CEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHHHhhCCCc
Q 009708 408 DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEF 487 (528)
Q Consensus 408 D~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~l~~~~~~ 487 (528)
|+|++.... . .++ ...+|+.+.++|+|||.++++++.... ...+.+..++.+. +|
T Consensus 117 D~v~~~~~l------~-~~~----------------~~~~l~~~~~~L~~gG~l~i~~~~~~~-~~~~~~~~~l~~~-Gf 171 (215)
T 2zfu_A 117 DVAVFCLSL------M-GTN----------------IRDFLEEANRVLKPGGLLKVAEVSSRF-EDVRTFLRAVTKL-GF 171 (215)
T ss_dssp EEEEEESCC------C-SSC----------------HHHHHHHHHHHEEEEEEEEEEECGGGC-SCHHHHHHHHHHT-TE
T ss_pred eEEEEehhc------c-ccC----------------HHHHHHHHHHhCCCCeEEEEEEcCCCC-CCHHHHHHHHHHC-CC
Confidence 999974332 1 111 134688999999999999988765321 1344556666664 56
Q ss_pred eEec
Q 009708 488 SIDP 491 (528)
Q Consensus 488 ~~~~ 491 (528)
++..
T Consensus 172 ~~~~ 175 (215)
T 2zfu_A 172 KIVS 175 (215)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6544
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=4.2e-09 Score=110.54 Aligned_cols=110 Identities=14% Similarity=0.115 Sum_probs=76.8
Q ss_pred HHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEE-EEcCccccccccCCC
Q 009708 327 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIR-TIHADLRTFADNSTV 405 (528)
Q Consensus 327 ~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~-~~~~D~~~~~~~~~~ 405 (528)
+...+.+.++.+|||+|||+|..+..+++. ..+|+|+|+|+.+++.++++ ++..... +...+...++. ..+
T Consensus 99 l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~---g~~v~gvD~s~~~~~~a~~~----~~~~~~~~~~~~~~~~l~~-~~~ 170 (416)
T 4e2x_A 99 FLATELTGPDPFIVEIGCNDGIMLRTIQEA---GVRHLGFEPSSGVAAKAREK----GIRVRTDFFEKATADDVRR-TEG 170 (416)
T ss_dssp HHHTTTCSSSCEEEEETCTTTTTHHHHHHT---TCEEEEECCCHHHHHHHHTT----TCCEECSCCSHHHHHHHHH-HHC
T ss_pred HHHHhCCCCCCEEEEecCCCCHHHHHHHHc---CCcEEEECCCHHHHHHHHHc----CCCcceeeechhhHhhccc-CCC
Confidence 344456678899999999999999999875 45999999999999988765 5543211 12233333321 236
Q ss_pred CCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcC
Q 009708 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466 (528)
Q Consensus 406 ~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTc 466 (528)
+||+|++.- ++.+-++ ...+|+.+.++|||||+|++.+-
T Consensus 171 ~fD~I~~~~------vl~h~~d----------------~~~~l~~~~r~LkpgG~l~i~~~ 209 (416)
T 4e2x_A 171 PANVIYAAN------TLCHIPY----------------VQSVLEGVDALLAPDGVFVFEDP 209 (416)
T ss_dssp CEEEEEEES------CGGGCTT----------------HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CEEEEEECC------hHHhcCC----------------HHHHHHHHHHHcCCCeEEEEEeC
Confidence 899999742 2222221 24569999999999999998753
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.64 E-value=1.4e-08 Score=99.57 Aligned_cols=126 Identities=18% Similarity=0.092 Sum_probs=77.7
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcC-ccccccccCCCCCCEEE
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA-DLRTFADNSTVKCDKVL 411 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~-D~~~~~~~~~~~fD~Vl 411 (528)
+.++.+|||||||||+++..++..+ +...|+++|+.......... .+..+. +.+.+... |...+. ..++|+|+
T Consensus 88 Lk~~~~VLDLGaAPGGWsQvAa~~~-gv~sV~GvdvG~d~~~~pi~-~~~~g~-~ii~~~~~~dv~~l~---~~~~DvVL 161 (282)
T 3gcz_A 88 VKPTGIVVDLGCGRGGWSYYAASLK-NVKKVMAFTLGVQGHEKPIM-RTTLGW-NLIRFKDKTDVFNME---VIPGDTLL 161 (282)
T ss_dssp CCCCEEEEEETCTTCHHHHHHHTST-TEEEEEEECCCCTTSCCCCC-CCBTTG-GGEEEECSCCGGGSC---CCCCSEEE
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhc-CCCeeeeEEeccCccccccc-cccCCC-ceEEeeCCcchhhcC---CCCcCEEE
Confidence 5678899999999999999888753 45679999997653211100 001121 22333322 443332 46899999
Q ss_pred EcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCC--CEEEEEcCCCCc--hhhHHHHHHHHhh
Q 009708 412 LDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPG--GVLVYSTCSIDP--EENEERVEAFLLR 483 (528)
Q Consensus 412 ~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpG--G~LvysTcs~~~--~Ene~~v~~~l~~ 483 (528)
+|.... +|. ..+++.. +..+|+-|..+|+|| |.+| |.++. .+....+.+.+++
T Consensus 162 SDmApn-sG~-------------~~~D~~r--s~~LL~~A~~~Lk~g~~G~Fv---~KvF~pyg~~~~~l~~~lk~ 218 (282)
T 3gcz_A 162 CDIGES-SPS-------------IAVEEQR--TLRVLNCAKQWLQEGNYTEFC---IKVLCPYTPLIMEELSRLQL 218 (282)
T ss_dssp ECCCCC-CSC-------------HHHHHHH--HHHHHHHHHHHHHHHCCCEEE---EEESCCCSHHHHHHHHHHHH
T ss_pred ecCccC-CCC-------------hHHHHHH--HHHHHHHHHHHcCCCCCCcEE---EEEecCCCccHHHHHHHHHH
Confidence 996555 665 2333332 223499999999999 9999 55555 4443333444444
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=3.8e-08 Score=95.88 Aligned_cols=107 Identities=19% Similarity=0.092 Sum_probs=80.4
Q ss_pred CCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAP 415 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~P 415 (528)
..+|||+|||.|-+++.++.. .+..+++|+|+++.+++.+++|+..+|+. .++...|...-.. ++.||+||+.
T Consensus 133 p~~VLDLGCG~GpLAl~~~~~-~p~a~y~a~DId~~~le~a~~~l~~~g~~--~~~~v~D~~~~~p--~~~~DvaL~l-- 205 (281)
T 3lcv_B 133 PNTLRDLACGLNPLAAPWMGL-PAETVYIASDIDARLVGFVDEALTRLNVP--HRTNVADLLEDRL--DEPADVTLLL-- 205 (281)
T ss_dssp CSEEEETTCTTGGGCCTTTTC-CTTCEEEEEESBHHHHHHHHHHHHHTTCC--EEEEECCTTTSCC--CSCCSEEEET--
T ss_pred CceeeeeccCccHHHHHHHhh-CCCCEEEEEeCCHHHHHHHHHHHHhcCCC--ceEEEeeecccCC--CCCcchHHHH--
Confidence 459999999999999988764 45789999999999999999999999987 5677788765443 4789999873
Q ss_pred CCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEE-EEcCCC
Q 009708 416 CSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV-YSTCSI 468 (528)
Q Consensus 416 csg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lv-ysTcs~ 468 (528)
.-+..+...|+..+-..+..|+++|.+| +-|-|+
T Consensus 206 -------------------kti~~Le~q~kg~g~~ll~aL~~~~vvVSfp~ksl 240 (281)
T 3lcv_B 206 -------------------KTLPCLETQQRGSGWEVIDIVNSPNIVVTFPTKSL 240 (281)
T ss_dssp -------------------TCHHHHHHHSTTHHHHHHHHSSCSEEEEEEECC--
T ss_pred -------------------HHHHHhhhhhhHHHHHHHHHhCCCCEEEeccchhh
Confidence 1233333334433337889999999888 445343
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=1.1e-07 Score=91.71 Aligned_cols=106 Identities=17% Similarity=0.136 Sum_probs=78.0
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDA 414 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~ 414 (528)
+..+|||+|||.|-+++.++ +..+++|+|+|+.+++.+++++..+|.+ ..+..+|....+. ++.||+|++.
T Consensus 105 ~p~~VLDlGCG~gpLal~~~----~~~~y~a~DId~~~i~~ar~~~~~~g~~--~~~~v~D~~~~~~--~~~~DvvLll- 175 (253)
T 3frh_A 105 TPRRVLDIACGLNPLALYER----GIASVWGCDIHQGLGDVITPFAREKDWD--FTFALQDVLCAPP--AEAGDLALIF- 175 (253)
T ss_dssp CCSEEEEETCTTTHHHHHHT----TCSEEEEEESBHHHHHHHHHHHHHTTCE--EEEEECCTTTSCC--CCBCSEEEEE-
T ss_pred CCCeEEEecCCccHHHHHhc----cCCeEEEEeCCHHHHHHHHHHHHhcCCC--ceEEEeecccCCC--CCCcchHHHH-
Confidence 45699999999999988766 4789999999999999999999999854 6788888876553 3689999863
Q ss_pred CCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEE-EEcCCCC
Q 009708 415 PCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV-YSTCSID 469 (528)
Q Consensus 415 Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lv-ysTcs~~ 469 (528)
.-+..+...++..+......|+++|.+| +-|-|+.
T Consensus 176 --------------------k~lh~LE~q~~~~~~~ll~aL~~~~vvVsfPtksl~ 211 (253)
T 3frh_A 176 --------------------KLLPLLEREQAGSAMALLQSLNTPRMAVSFPTRSLG 211 (253)
T ss_dssp --------------------SCHHHHHHHSTTHHHHHHHHCBCSEEEEEEECC---
T ss_pred --------------------HHHHHhhhhchhhHHHHHHHhcCCCEEEEcChHHhc
Confidence 1223333344444557778999998777 3344544
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=2.3e-07 Score=90.91 Aligned_cols=112 Identities=16% Similarity=0.127 Sum_probs=68.5
Q ss_pred CCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEE
Q 009708 332 DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVL 411 (528)
Q Consensus 332 ~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl 411 (528)
.++++.+|||||||||+++..+++.. +...++|+|+.......... ....|. +.+. +..++.. .....++||+|+
T Consensus 71 ~l~~~~~VLDLGaAPGGWSQvAa~~~-~~~~v~g~dVGvDl~~~pi~-~~~~g~-~ii~-~~~~~dv-~~l~~~~~DlVl 145 (277)
T 3evf_A 71 YVKLEGRVIDLGCGRGGWCYYAAAQK-EVSGVKGFTLGRDGHEKPMN-VQSLGW-NIIT-FKDKTDI-HRLEPVKCDTLL 145 (277)
T ss_dssp SSCCCEEEEEETCTTCHHHHHHHTST-TEEEEEEECCCCTTCCCCCC-CCBTTG-GGEE-EECSCCT-TTSCCCCCSEEE
T ss_pred CCCCCCEEEEecCCCCHHHHHHHHhc-CCCcceeEEEeccCcccccc-cCcCCC-CeEE-Eecccee-hhcCCCCccEEE
Confidence 35678899999999999999888753 34578888887432100000 000111 3333 4444311 112246899999
Q ss_pred EcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCC-CEEEEE
Q 009708 412 LDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPG-GVLVYS 464 (528)
Q Consensus 412 ~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpG-G~Lvys 464 (528)
+|.... +|. ..++.... ..+|+.|.++|+|| |.+|..
T Consensus 146 sD~apn-sG~-------------~~~D~~rs--~~LL~~a~~~LkpG~G~FV~K 183 (277)
T 3evf_A 146 CDIGES-SSS-------------SVTEGERT--VRVLDTVEKWLACGVDNFCVK 183 (277)
T ss_dssp ECCCCC-CSC-------------HHHHHHHH--HHHHHHHHHHHTTCCSEEEEE
T ss_pred ecCccC-cCc-------------hHHHHHHH--HHHHHHHHHHhCCCCCeEEEE
Confidence 996555 565 22333322 23489999999999 999954
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=3.8e-07 Score=93.77 Aligned_cols=119 Identities=17% Similarity=0.121 Sum_probs=87.3
Q ss_pred HHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCC
Q 009708 326 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 405 (528)
Q Consensus 326 l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~ 405 (528)
.+....+..+..+|+|+|||+|..+..+++.. +..+++..|. |..++.+++++...+. ++|+++.+|++..+ ..
T Consensus 170 ~~~~~~~~~~~~~v~DvGgG~G~~~~~l~~~~-p~~~~~~~dl-p~v~~~a~~~~~~~~~-~rv~~~~gD~~~~~---~~ 243 (353)
T 4a6d_A 170 SVLTAFDLSVFPLMCDLGGGAGALAKECMSLY-PGCKITVFDI-PEVVWTAKQHFSFQEE-EQIDFQEGDFFKDP---LP 243 (353)
T ss_dssp HHHHSSCGGGCSEEEEETCTTSHHHHHHHHHC-SSCEEEEEEC-HHHHHHHHHHSCC--C-CSEEEEESCTTTSC---CC
T ss_pred HHHHhcCcccCCeEEeeCCCCCHHHHHHHHhC-CCceeEeccC-HHHHHHHHHhhhhccc-CceeeecCccccCC---CC
Confidence 34445566667899999999999999999985 4678999997 8899999988876554 46999999997643 23
Q ss_pred CCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCc
Q 009708 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDP 470 (528)
Q Consensus 406 ~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~ 470 (528)
.+|+|++- .++ +.++.++. .++|+++.+.|+|||+|++....+.+
T Consensus 244 ~~D~~~~~------~vl-------h~~~d~~~-------~~iL~~~~~al~pgg~lli~e~~~~~ 288 (353)
T 4a6d_A 244 EADLYILA------RVL-------HDWADGKC-------SHLLERIYHTCKPGGGILVIESLLDE 288 (353)
T ss_dssp CCSEEEEE------SSG-------GGSCHHHH-------HHHHHHHHHHCCTTCEEEEEECCCCT
T ss_pred CceEEEee------eec-------ccCCHHHH-------HHHHHHHHhhCCCCCEEEEEEeeeCC
Confidence 58999861 112 12233333 34599999999999999988766544
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=98.57 E-value=3.2e-07 Score=91.15 Aligned_cols=125 Identities=12% Similarity=0.101 Sum_probs=96.1
Q ss_pred CCeEEEeCCccchHHHHHHHHcC----CCcEEEEEcCCh--------------------------HHHHHHHHHHHHcCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLS----GQGLVYAIDINK--------------------------GRLRILNETAKLHQV 385 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~----~~~~v~avD~s~--------------------------~~l~~~~~n~~~~g~ 385 (528)
...||++|++.|+.++.++..+. +.++|+++|..+ ..++.+++|+++.|+
T Consensus 107 pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~gl 186 (282)
T 2wk1_A 107 PGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYDL 186 (282)
T ss_dssp CCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTTC
T ss_pred CCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcCC
Confidence 34899999999999999988764 367899999642 147789999999999
Q ss_pred C-ccEEEEcCccccccccC-CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEE
Q 009708 386 N-SVIRTIHADLRTFADNS-TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463 (528)
Q Consensus 386 ~-~~i~~~~~D~~~~~~~~-~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvy 463 (528)
. ++|+++.+|+.+..+.. .++||.|++|+-. ..-+...|+.++..|+|||+||+
T Consensus 187 ~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~------------------------y~~~~~~Le~~~p~L~pGGiIv~ 242 (282)
T 2wk1_A 187 LDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDL------------------------YESTWDTLTNLYPKVSVGGYVIV 242 (282)
T ss_dssp CSTTEEEEESCHHHHSTTCCCCCEEEEEECCCS------------------------HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred CcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCc------------------------cccHHHHHHHHHhhcCCCEEEEE
Confidence 4 67999999998765543 4689999999643 01123468889999999999998
Q ss_pred EcCCCCchhhHHHHHHHHhhCC
Q 009708 464 STCSIDPEENEERVEAFLLRHP 485 (528)
Q Consensus 464 sTcs~~~~Ene~~v~~~l~~~~ 485 (528)
-...+.+.+ ...+.+|++++.
T Consensus 243 DD~~~~~G~-~~Av~Ef~~~~~ 263 (282)
T 2wk1_A 243 DDYMMCPPC-KDAVDEYRAKFD 263 (282)
T ss_dssp SSCTTCHHH-HHHHHHHHHHTT
T ss_pred cCCCCCHHH-HHHHHHHHHhcC
Confidence 776443443 556788888764
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=3.4e-07 Score=90.38 Aligned_cols=127 Identities=12% Similarity=-0.006 Sum_probs=77.3
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcC-ccccccccCCCCCCEEE
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA-DLRTFADNSTVKCDKVL 411 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~-D~~~~~~~~~~~fD~Vl 411 (528)
..+|.+|||+|||||+++..+++.+ +...|+|+|+.......... .+..+. +.+.+... |+..+. +.++|+|+
T Consensus 79 ~~~g~~vlDLGaaPGgWsqva~~~~-gv~sV~Gvdlg~~~~~~P~~-~~~~~~-~iv~~~~~~di~~l~---~~~~DlVl 152 (300)
T 3eld_A 79 LRITGRVLDLGCGRGGWSYYAAAQK-EVMSVKGYTLGIEGHEKPIH-MQTLGW-NIVKFKDKSNVFTMP---TEPSDTLL 152 (300)
T ss_dssp CCCCEEEEEETCTTCHHHHHHHTST-TEEEEEEECCCCTTSCCCCC-CCBTTG-GGEEEECSCCTTTSC---CCCCSEEE
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHhc-CCceeeeEEecccccccccc-ccccCC-ceEEeecCceeeecC---CCCcCEEe
Confidence 3578899999999999999998753 34579999997532100000 000111 22333322 333322 46899999
Q ss_pred EcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCC-CEEEEEcCCCCc--hhhHHHHHHHHhhC
Q 009708 412 LDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPG-GVLVYSTCSIDP--EENEERVEAFLLRH 484 (528)
Q Consensus 412 ~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpG-G~LvysTcs~~~--~Ene~~v~~~l~~~ 484 (528)
+|.... +|. ..+++. .|..+|+-|..+|+|| |.+| |.++. .+....+.+.++++
T Consensus 153 sD~APn-sG~-------------~~~D~~--rs~~LL~~A~~~LkpG~G~FV---~KvF~~yG~~~~~ll~~lk~~ 209 (300)
T 3eld_A 153 CDIGES-SSN-------------PLVERD--RTMKVLENFERWKHVNTENFC---VKVLAPYHPDVIEKLERLQLR 209 (300)
T ss_dssp ECCCCC-CSS-------------HHHHHH--HHHHHHHHHHHHCCTTCCEEE---EEESSTTSHHHHHHHHHHHHH
T ss_pred ecCcCC-CCC-------------HHHHHH--HHHHHHHHHHHHhcCCCCcEE---EEeccccCccHHHHHHHHHHh
Confidence 997766 676 233333 2334599999999999 9999 55555 44443344444443
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.53 E-value=6.8e-08 Score=94.75 Aligned_cols=89 Identities=17% Similarity=0.173 Sum_probs=68.0
Q ss_pred hHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc
Q 009708 323 SAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 402 (528)
Q Consensus 323 ~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~ 402 (528)
....++..+++.++++|||+|||+|..|. ++ . ....+|+|+|+++.+++.+++++... + +++++++|+..+...
T Consensus 9 i~~~iv~~~~~~~~~~VLEIG~G~G~lt~-l~-~-~~~~~v~avEid~~~~~~a~~~~~~~--~-~v~~i~~D~~~~~~~ 82 (252)
T 1qyr_A 9 VIDSIVSAINPQKGQAMVEIGPGLAALTE-PV-G-ERLDQLTVIELDRDLAARLQTHPFLG--P-KLTIYQQDAMTFNFG 82 (252)
T ss_dssp HHHHHHHHHCCCTTCCEEEECCTTTTTHH-HH-H-TTCSCEEEECCCHHHHHHHHTCTTTG--G-GEEEECSCGGGCCHH
T ss_pred HHHHHHHhcCCCCcCEEEEECCCCcHHHH-hh-h-CCCCeEEEEECCHHHHHHHHHHhccC--C-ceEEEECchhhCCHH
Confidence 34556677788889999999999999999 64 3 22223999999999999999877543 2 599999999886421
Q ss_pred C----CCCCCEEEEcCCCC
Q 009708 403 S----TVKCDKVLLDAPCS 417 (528)
Q Consensus 403 ~----~~~fD~Vl~D~Pcs 417 (528)
. ....|.|+.|+|+.
T Consensus 83 ~~~~~~~~~~~vvsNlPY~ 101 (252)
T 1qyr_A 83 ELAEKMGQPLRVFGNLPYN 101 (252)
T ss_dssp HHHHHHTSCEEEEEECCTT
T ss_pred HhhcccCCceEEEECCCCC
Confidence 1 12457999999994
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=98.53 E-value=9.1e-08 Score=94.32 Aligned_cols=85 Identities=16% Similarity=0.246 Sum_probs=71.2
Q ss_pred HHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC--
Q 009708 326 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS-- 403 (528)
Q Consensus 326 l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~-- 403 (528)
-+++.+.+++|+.+||++||.||.|..+++. +++|+|+|.++.+++.+++ ++. ++++++++++.++....
T Consensus 13 e~le~L~~~~gg~~VD~T~G~GGHS~~il~~---~g~VigiD~Dp~Ai~~A~~-L~~----~rv~lv~~~f~~l~~~L~~ 84 (285)
T 1wg8_A 13 EALDLLAVRPGGVYVDATLGGAGHARGILER---GGRVIGLDQDPEAVARAKG-LHL----PGLTVVQGNFRHLKRHLAA 84 (285)
T ss_dssp HHHHHHTCCTTCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHH-TCC----TTEEEEESCGGGHHHHHHH
T ss_pred HHHHhhCCCCCCEEEEeCCCCcHHHHHHHHC---CCEEEEEeCCHHHHHHHHh-hcc----CCEEEEECCcchHHHHHHH
Confidence 4556778889999999999999999999986 5899999999999999987 543 36999999998874321
Q ss_pred --CCCCCEEEEcCCCCC
Q 009708 404 --TVKCDKVLLDAPCSG 418 (528)
Q Consensus 404 --~~~fD~Vl~D~Pcsg 418 (528)
..+||.|++|..+|+
T Consensus 85 ~g~~~vDgIL~DLGvSS 101 (285)
T 1wg8_A 85 LGVERVDGILADLGVSS 101 (285)
T ss_dssp TTCSCEEEEEEECSCCH
T ss_pred cCCCCcCEEEeCCcccc
Confidence 257999999998776
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.51 E-value=1.9e-07 Score=91.83 Aligned_cols=134 Identities=19% Similarity=0.248 Sum_probs=90.2
Q ss_pred CCCCeEEEeCCccchHHHHHHHHc------CCC-----cEEEEEcCCh---HHHH-----------HHHHHHHHc-----
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCL------SGQ-----GLVYAIDINK---GRLR-----------ILNETAKLH----- 383 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~------~~~-----~~v~avD~s~---~~l~-----------~~~~n~~~~----- 383 (528)
.++.+|||+|+|+|..++.+++.. .+. .+++++|..| +.+. .++.+++..
T Consensus 59 ~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~ 138 (257)
T 2qy6_A 59 HPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLP 138 (257)
T ss_dssp SSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCS
T ss_pred CCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhcccccc
Confidence 355699999999999998877654 332 5899999987 4433 566666641
Q ss_pred -----CCC---ccEEEEcCccccccccCCC----CCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHH
Q 009708 384 -----QVN---SVIRTIHADLRTFADNSTV----KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAA 451 (528)
Q Consensus 384 -----g~~---~~i~~~~~D~~~~~~~~~~----~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a 451 (528)
.+. .+++++.+|+.+..+.... .||+|++|+-. -.++|++ |. .++++.+
T Consensus 139 g~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fs-----p~~~p~l-w~-------------~~~l~~l 199 (257)
T 2qy6_A 139 GCHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFA-----PAKNPDM-WT-------------QNLFNAM 199 (257)
T ss_dssp EEEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSC-----TTTCGGG-CC-------------HHHHHHH
T ss_pred chhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCC-----cccChhh-cC-------------HHHHHHH
Confidence 121 2478999999886544322 79999999722 1245542 32 3568889
Q ss_pred hccCcCCCEEEEEcCCCCchhhHHHHHHHHhhCCCceEecCCC
Q 009708 452 SLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADG 494 (528)
Q Consensus 452 ~~~LkpGG~LvysTcs~~~~Ene~~v~~~l~~~~~~~~~~~~~ 494 (528)
.++|+|||+|+..|+. ..|..-|.. -+|.+...+.
T Consensus 200 ~~~L~pGG~l~tysaa-------~~vrr~L~~-aGF~v~~~~g 234 (257)
T 2qy6_A 200 ARLARPGGTLATFTSA-------GFVRRGLQE-AGFTMQKRKG 234 (257)
T ss_dssp HHHEEEEEEEEESCCB-------HHHHHHHHH-HTEEEEEECC
T ss_pred HHHcCCCcEEEEEeCC-------HHHHHHHHH-CCCEEEeCCC
Confidence 9999999999843332 245555555 3788776543
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=6.2e-07 Score=92.64 Aligned_cols=104 Identities=13% Similarity=0.092 Sum_probs=76.2
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEE
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 412 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~ 412 (528)
..++.+|||+|||+|..+..+++.. +..+++++|+ +.+++.++++ .+++++.+|+.+.. +.. |+|++
T Consensus 201 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~---p~~-D~v~~ 267 (368)
T 3reo_A 201 FEGLTTIVDVGGGTGAVASMIVAKY-PSINAINFDL-PHVIQDAPAF-------SGVEHLGGDMFDGV---PKG-DAIFI 267 (368)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCCC-------TTEEEEECCTTTCC---CCC-SEEEE
T ss_pred ccCCCEEEEeCCCcCHHHHHHHHhC-CCCEEEEEeh-HHHHHhhhhc-------CCCEEEecCCCCCC---CCC-CEEEE
Confidence 4567899999999999999999885 4678999999 8888665431 35999999998622 223 99986
Q ss_pred cCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCC
Q 009708 413 DAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSID 469 (528)
Q Consensus 413 D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~ 469 (528)
.-.. . .+...+. .++|+++.+.|||||+|++....+.
T Consensus 268 ~~vl------h-------~~~~~~~-------~~~l~~~~~~L~pgG~l~i~e~~~~ 304 (368)
T 3reo_A 268 KWIC------H-------DWSDEHC-------LKLLKNCYAALPDHGKVIVAEYILP 304 (368)
T ss_dssp ESCG------G-------GBCHHHH-------HHHHHHHHHHSCTTCEEEEEECCCC
T ss_pred echh------h-------cCCHHHH-------HHHHHHHHHHcCCCCEEEEEEeccC
Confidence 3221 1 1222222 3469999999999999998877654
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.46 E-value=1.2e-06 Score=87.26 Aligned_cols=137 Identities=12% Similarity=0.229 Sum_probs=96.6
Q ss_pred cCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHc--C-C-CccEEEEcCccccccccCCCC
Q 009708 331 VDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLH--Q-V-NSVIRTIHADLRTFADNSTVK 406 (528)
Q Consensus 331 l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~--g-~-~~~i~~~~~D~~~~~~~~~~~ 406 (528)
+.+.| .+||=+|.|.|+.+..+++. .+..+|+.||+++..++.+++.+... + . +.+++++.+|+..+.....++
T Consensus 80 ~~p~p-k~VLIiGgGdG~~~revlk~-~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~ 157 (294)
T 3o4f_A 80 AHGHA-KHVLIIGGGDGAMLREVTRH-KNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQT 157 (294)
T ss_dssp HSSCC-CEEEEESCTTSHHHHHHHTC-TTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCC
T ss_pred hCCCC-CeEEEECCCchHHHHHHHHc-CCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhcccc
Confidence 34444 58999999999999998875 34569999999999999999987542 2 1 357999999999998776789
Q ss_pred CCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc--CCCCchhhHHHHHHHHhhC
Q 009708 407 CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST--CSIDPEENEERVEAFLLRH 484 (528)
Q Consensus 407 fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT--cs~~~~Ene~~v~~~l~~~ 484 (528)
||+|++|.+-. .|. +... ...++++.+.+.|+|||+++.-+ +.++++.-......+-+-.
T Consensus 158 yDvIi~D~~dp-~~~----~~~L-------------~t~eFy~~~~~~L~p~Gv~v~q~~sp~~~~~~~~~~~~~l~~~F 219 (294)
T 3o4f_A 158 FDVIISDCTDP-IGP----GESL-------------FTSAFYEGCKRCLNPGGIFVAQNGVCFLQQEEAIDSHRKLSHYF 219 (294)
T ss_dssp EEEEEESCCCC-CCT----TCCS-------------SCCHHHHHHHHTEEEEEEEEEEEEESSSCCHHHHHHHHHHHHHC
T ss_pred CCEEEEeCCCc-CCC----chhh-------------cCHHHHHHHHHHhCCCCEEEEecCCcccChHHHHHHHHHHHhhC
Confidence 99999997642 121 1101 11346888999999999999643 3344444444444444445
Q ss_pred CCc
Q 009708 485 PEF 487 (528)
Q Consensus 485 ~~~ 487 (528)
|..
T Consensus 220 ~~v 222 (294)
T 3o4f_A 220 SDV 222 (294)
T ss_dssp SEE
T ss_pred Cce
Confidence 543
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.45 E-value=1.3e-07 Score=95.20 Aligned_cols=89 Identities=22% Similarity=0.300 Sum_probs=73.4
Q ss_pred HHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC--
Q 009708 326 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS-- 403 (528)
Q Consensus 326 l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~-- 403 (528)
-+++.|.++||+.++|+++|.||.|..+++.+++.|+|+|+|+++.+++.++ ++ . .++++++++++.++....
T Consensus 48 Evl~~L~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL---~-~~Rv~lv~~nF~~l~~~L~~ 122 (347)
T 3tka_A 48 EAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI---D-DPRFSIIHGPFSALGEYVAE 122 (347)
T ss_dssp HHHHHTCCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC---C-CTTEEEEESCGGGHHHHHHH
T ss_pred HHHHhhCCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh---c-CCcEEEEeCCHHHHHHHHHh
Confidence 3556778899999999999999999999998888899999999999999884 33 2 357999999998875321
Q ss_pred ---CCCCCEEEEcCCCCCC
Q 009708 404 ---TVKCDKVLLDAPCSGL 419 (528)
Q Consensus 404 ---~~~fD~Vl~D~Pcsg~ 419 (528)
.+++|.|+.|..+|+.
T Consensus 123 ~g~~~~vDgILfDLGVSS~ 141 (347)
T 3tka_A 123 RDLIGKIDGILLDLGVSSP 141 (347)
T ss_dssp TTCTTCEEEEEEECSCCHH
T ss_pred cCCCCcccEEEECCccCHH
Confidence 1369999999988764
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=3.4e-07 Score=100.16 Aligned_cols=73 Identities=14% Similarity=0.088 Sum_probs=63.6
Q ss_pred CCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc-CCCCCCEEEE
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCDKVLL 412 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~-~~~~fD~Vl~ 412 (528)
+.+|||+|||.|..+..||++ +..|+|||.++..++.|+..+...|..+ |++.++|+.++... ..++||+|++
T Consensus 67 ~~~vLDvGCG~G~~~~~la~~---ga~V~giD~~~~~i~~a~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~fD~v~~ 140 (569)
T 4azs_A 67 PLNVLDLGCAQGFFSLSLASK---GATIVGIDFQQENINVCRALAEENPDFA-AEFRVGRIEEVIAALEEGEFDLAIG 140 (569)
T ss_dssp CCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHTSTTSE-EEEEECCHHHHHHHCCTTSCSEEEE
T ss_pred CCeEEEECCCCcHHHHHHHhC---CCEEEEECCCHHHHHHHHHHHHhcCCCc-eEEEECCHHHHhhhccCCCccEEEE
Confidence 469999999999999999986 5799999999999999999999888654 89999999887543 2468999996
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=9.7e-07 Score=91.08 Aligned_cols=109 Identities=13% Similarity=0.112 Sum_probs=78.1
Q ss_pred HHhcC-CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCC
Q 009708 328 VAVVD-PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVK 406 (528)
Q Consensus 328 ~~~l~-~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~ 406 (528)
...+. ..++.+|||+|||+|..+..+++.. +..+++++|+ +.+++.++++ .+++++.+|+.+ + .. ..
T Consensus 193 ~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~-~p-~~ 260 (364)
T 3p9c_A 193 LELYHGFEGLGTLVDVGGGVGATVAAIAAHY-PTIKGVNFDL-PHVISEAPQF-------PGVTHVGGDMFK-E-VP-SG 260 (364)
T ss_dssp HHHCCTTTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCCC-------TTEEEEECCTTT-C-CC-CC
T ss_pred HHhcccccCCCEEEEeCCCCCHHHHHHHHHC-CCCeEEEecC-HHHHHhhhhc-------CCeEEEeCCcCC-C-CC-CC
Confidence 33444 5667899999999999999999875 4578999999 8887665431 359999999986 2 11 23
Q ss_pred CCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCC
Q 009708 407 CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSID 469 (528)
Q Consensus 407 fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~ 469 (528)
|+|++--- +. .+..++. .++|+++.+.|||||+|++....+.
T Consensus 261 -D~v~~~~v------lh-------~~~d~~~-------~~~L~~~~~~L~pgG~l~i~e~~~~ 302 (364)
T 3p9c_A 261 -DTILMKWI------LH-------DWSDQHC-------ATLLKNCYDALPAHGKVVLVQCILP 302 (364)
T ss_dssp -SEEEEESC------GG-------GSCHHHH-------HHHHHHHHHHSCTTCEEEEEECCBC
T ss_pred -CEEEehHH------hc-------cCCHHHH-------HHHHHHHHHHcCCCCEEEEEEeccC
Confidence 99986221 11 1222333 3469999999999999998776544
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=4.3e-07 Score=99.52 Aligned_cols=111 Identities=21% Similarity=0.173 Sum_probs=81.2
Q ss_pred CCeEEEeCCccchH---HHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEE
Q 009708 336 GQSIVDCCAAPGGK---TLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 412 (528)
Q Consensus 336 g~~VLDl~aG~G~k---t~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~ 412 (528)
+..|||+|||+|.. ++.+++......+|+|||.|+. ...+++..+.+|+.++|+++++|++++.. ++++|+|++
T Consensus 358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~-A~~a~~~v~~N~~~dkVtVI~gd~eev~L--PEKVDIIVS 434 (637)
T 4gqb_A 358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPN-AVVTLENWQFEEWGSQVTVVSSDMREWVA--PEKADIIVS 434 (637)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHH-HHHHHHHHHHHTTGGGEEEEESCTTTCCC--SSCEEEEEC
T ss_pred CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHH-HHHHHHHHHhccCCCeEEEEeCcceeccC--CcccCEEEE
Confidence 34799999999998 5555555332337999999984 56778889999999999999999998753 479999998
Q ss_pred cCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCC
Q 009708 413 DAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSID 469 (528)
Q Consensus 413 D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~ 469 (528)
..--+ ..+. +.. .+.|...-++|||||+++=+.|+++
T Consensus 435 EwMG~--fLl~-----------E~m-------levL~Ardr~LKPgGimiPs~atly 471 (637)
T 4gqb_A 435 ELLGS--FADN-----------ELS-------PECLDGAQHFLKDDGVSIPGEYTSF 471 (637)
T ss_dssp CCCBT--TBGG-----------GCH-------HHHHHHHGGGEEEEEEEESCEEEEE
T ss_pred EcCcc--cccc-----------cCC-------HHHHHHHHHhcCCCcEEccccceEE
Confidence 64432 2211 111 1357788899999999985555533
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.33 E-value=5.4e-07 Score=98.75 Aligned_cols=111 Identities=15% Similarity=0.136 Sum_probs=79.4
Q ss_pred CCeEEEeCCccchHHHHH---HHHcC---------CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc-
Q 009708 336 GQSIVDCCAAPGGKTLYM---ASCLS---------GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN- 402 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~l---a~~~~---------~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~- 402 (528)
+..|||+|||+|..+..+ ++..+ ...+|+|||.++..+..++.... +|+.++|+++++|++++...
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~~d~VtVI~gd~eev~lp~ 488 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTWKRRVTIIESDMRSLPGIA 488 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTTTTCSEEEESCGGGHHHHH
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCCCCeEEEEeCchhhccccc
Confidence 347999999999997433 22111 23499999999988877766654 89988899999999987531
Q ss_pred ---CCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 403 ---STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 403 ---~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
..+++|+|++...-+ .|. + ++..+.|..+-++|||||+++=+.|+
T Consensus 489 ~~~~~ekVDIIVSElmGs-fl~---n----------------EL~pe~Ld~v~r~Lkp~Gi~iP~~~t 536 (745)
T 3ua3_A 489 KDRGFEQPDIIVSELLGS-FGD---N----------------ELSPECLDGVTGFLKPTTISIPQKYT 536 (745)
T ss_dssp HHTTCCCCSEEEECCCBT-TBG---G----------------GSHHHHHHTTGGGSCTTCEEESCEEE
T ss_pred ccCCCCcccEEEEecccc-ccc---h----------------hccHHHHHHHHHhCCCCcEEECCccE
Confidence 147899999875532 111 0 12234578888999999999855555
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=1.2e-06 Score=90.56 Aligned_cols=102 Identities=16% Similarity=0.123 Sum_probs=75.2
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEE
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 412 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~ 412 (528)
..++.+|||+|||+|..+..+++.. +..+++++|+ +.+++.+++ .+ +++++.+|+.. . .+. ||+|++
T Consensus 207 ~~~~~~vLDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~------~~-~v~~~~~d~~~-~--~~~-~D~v~~ 273 (372)
T 1fp1_D 207 FEGISTLVDVGGGSGRNLELIISKY-PLIKGINFDL-PQVIENAPP------LS-GIEHVGGDMFA-S--VPQ-GDAMIL 273 (372)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCC------CT-TEEEEECCTTT-C--CCC-EEEEEE
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHHC-CCCeEEEeCh-HHHHHhhhh------cC-CCEEEeCCccc-C--CCC-CCEEEE
Confidence 5567899999999999999999985 4578999999 888876653 23 38999999976 2 223 999997
Q ss_pred cCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 413 DAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 413 D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
.- ++..- ..... ..+|+++.+.|||||+|++....
T Consensus 274 ~~------~lh~~-------~d~~~-------~~~l~~~~~~L~pgG~l~i~e~~ 308 (372)
T 1fp1_D 274 KA------VCHNW-------SDEKC-------IEFLSNCHKALSPNGKVIIVEFI 308 (372)
T ss_dssp ES------SGGGS-------CHHHH-------HHHHHHHHHHEEEEEEEEEEEEE
T ss_pred ec------ccccC-------CHHHH-------HHHHHHHHHhcCCCCEEEEEEec
Confidence 31 22211 11221 35699999999999999987544
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=2.2e-06 Score=87.82 Aligned_cols=103 Identities=20% Similarity=0.175 Sum_probs=75.6
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEc
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLD 413 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D 413 (528)
.++.+|||+|||+|..+..+++..+ ..+++++|+ +.+++.+++ ..+ ++++.+|+.... + .||+|++.
T Consensus 187 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~-v~~~~~d~~~~~---p-~~D~v~~~ 253 (352)
T 1fp2_A 187 DGLESIVDVGGGTGTTAKIICETFP-KLKCIVFDR-PQVVENLSG------SNN-LTYVGGDMFTSI---P-NADAVLLK 253 (352)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHTTCCC------BTT-EEEEECCTTTCC---C-CCSEEEEE
T ss_pred ccCceEEEeCCCccHHHHHHHHHCC-CCeEEEeeC-HHHHhhccc------CCC-cEEEeccccCCC---C-CccEEEee
Confidence 4567999999999999999998753 579999999 998877654 233 899999997621 2 39999973
Q ss_pred CCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcC---CCEEEEEcCCCC
Q 009708 414 APCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKP---GGVLVYSTCSID 469 (528)
Q Consensus 414 ~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~Lkp---GG~LvysTcs~~ 469 (528)
-. +.. +...+ ..++|+++.+.||| ||+|++......
T Consensus 254 ~~------lh~-------~~d~~-------~~~~l~~~~~~L~p~~~gG~l~i~e~~~~ 292 (352)
T 1fp2_A 254 YI------LHN-------WTDKD-------CLRILKKCKEAVTNDGKRGKVTIIDMVID 292 (352)
T ss_dssp SC------GGG-------SCHHH-------HHHHHHHHHHHHSGGGCCCEEEEEECEEC
T ss_pred hh------hcc-------CCHHH-------HHHHHHHHHHhCCCCCCCcEEEEEEeecC
Confidence 21 211 11122 13569999999999 999998766543
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=4.5e-06 Score=85.73 Aligned_cols=134 Identities=14% Similarity=0.125 Sum_probs=90.0
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHc---CC----CccEEEEcCcccccccc---CC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLH---QV----NSVIRTIHADLRTFADN---ST 404 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~---g~----~~~i~~~~~D~~~~~~~---~~ 404 (528)
+..+||=+|.|-|+....+.+. + ..+|+.||+++..++.+++.+... .. ..+++++.+|+..+... ..
T Consensus 205 ~pkrVLIIGgGdG~~~revlkh-~-~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~ 282 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVKL-K-PKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEG 282 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHTT-C-CSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHT
T ss_pred CCCeEEEECCCcHHHHHHHHhc-C-CceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhcc
Confidence 4579999999999999998875 3 479999999999999999865321 11 13588999999987642 24
Q ss_pred CCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE-cCCCCchhhHHHHHHHHhh
Q 009708 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS-TCSIDPEENEERVEAFLLR 483 (528)
Q Consensus 405 ~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys-Tcs~~~~Ene~~v~~~l~~ 483 (528)
++||+|++|.+-...+. .| ... ......+++++.+.+.|+|||++|.- .|...+ +.-..+...+++
T Consensus 283 ~~yDvIIvDl~D~~~s~---~p--------~g~-a~~Lft~eFy~~~~~~L~p~GVlv~Q~~s~~~~-~~~~~i~~tl~~ 349 (381)
T 3c6k_A 283 REFDYVINDLTAVPIST---SP--------EED-STWEFLRLILDLSMKVLKQDGKYFTQGNCVNLT-EALSLYEEQLGR 349 (381)
T ss_dssp CCEEEEEEECCSSCCCC---C-------------CHHHHHHHHHHHHHHTEEEEEEEEEEEEETTCH-HHHHHHHHHHTT
T ss_pred CceeEEEECCCCCcccC---cc--------cCc-chHHHHHHHHHHHHHhcCCCCEEEEecCCCcch-hHHHHHHHHHHH
Confidence 68999999965321111 01 000 01124567899999999999999863 344443 322334444444
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=98.19 E-value=6.8e-07 Score=88.21 Aligned_cols=75 Identities=12% Similarity=0.112 Sum_probs=62.5
Q ss_pred CCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---CCCCCCEEEE
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---STVKCDKVLL 412 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---~~~~fD~Vl~ 412 (528)
+..+||+++|+|..++.+.+ ++.+++.||.++..++.+++|++. ..++++++.|+...... ...+||+||+
T Consensus 92 ~~~~LDlfaGSGaLgiEaLS---~~d~~vfvE~~~~a~~~L~~Nl~~---~~~~~V~~~D~~~~L~~l~~~~~~fdLVfi 165 (283)
T 2oo3_A 92 LNSTLSYYPGSPYFAINQLR---SQDRLYLCELHPTEYNFLLKLPHF---NKKVYVNHTDGVSKLNALLPPPEKRGLIFI 165 (283)
T ss_dssp SSSSCCEEECHHHHHHHHSC---TTSEEEEECCSHHHHHHHTTSCCT---TSCEEEECSCHHHHHHHHCSCTTSCEEEEE
T ss_pred CCCceeEeCCcHHHHHHHcC---CCCeEEEEeCCHHHHHHHHHHhCc---CCcEEEEeCcHHHHHHHhcCCCCCccEEEE
Confidence 55799999999999998876 357999999999999999999975 34589999998764432 2357999999
Q ss_pred cCCC
Q 009708 413 DAPC 416 (528)
Q Consensus 413 D~Pc 416 (528)
|||+
T Consensus 166 DPPY 169 (283)
T 2oo3_A 166 DPSY 169 (283)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 9999
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=1.2e-05 Score=76.57 Aligned_cols=118 Identities=16% Similarity=0.131 Sum_probs=75.8
Q ss_pred CCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcC-ccccccccCCCCCCEE
Q 009708 332 DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA-DLRTFADNSTVKCDKV 410 (528)
Q Consensus 332 ~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~-D~~~~~~~~~~~fD~V 410 (528)
.++++.+|||+||+||+++-.++.. .+..+|+|+|+-..-.+.= ..++.+|.. .|++..+ |+..+.+ .++|.|
T Consensus 75 ~l~~g~~VvDLGaapGGWSq~~a~~-~g~~~V~avdvG~~ghe~P-~~~~s~gwn-~v~fk~gvDv~~~~~---~~~Dtl 148 (267)
T 3p8z_A 75 MVIPEGRVIDLGCGRGGWSYYCAGL-KKVTEVRGYTKGGPGHEEP-VPMSTYGWN-IVKLMSGKDVFYLPP---EKCDTL 148 (267)
T ss_dssp SSCCCEEEEEESCTTSHHHHHHHTS-TTEEEEEEECCCSTTSCCC-CCCCCTTTT-SEEEECSCCGGGCCC---CCCSEE
T ss_pred CCCCCCEEEEcCCCCCcHHHHHHHh-cCCCEEEEEecCCCCccCc-chhhhcCcC-ceEEEeccceeecCC---ccccEE
Confidence 4568889999999999999988876 4455899999965433100 011234555 4899999 9866554 569999
Q ss_pred EEc-CCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHH
Q 009708 411 LLD-APCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEER 476 (528)
Q Consensus 411 l~D-~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~ 476 (528)
+|| +|.|+ . | .+++.-. .+.|+-+.++|++ |.++ |.+...+..++
T Consensus 149 lcDIgeSs~--~----~---------~vE~~Rt--lrvLela~~wL~~-~~fc---~KVl~py~p~v 194 (267)
T 3p8z_A 149 LCDIGESSP--S----P---------TVEESRT--IRVLKMVEPWLKN-NQFC---IKVLNPYMPTV 194 (267)
T ss_dssp EECCCCCCS--C----H---------HHHHHHH--HHHHHHHGGGCSS-CEEE---EEESCCCSHHH
T ss_pred EEecCCCCC--C----h---------hhhhhHH--HHHHHHHHHhccc-CCEE---EEEccCCChhH
Confidence 999 44332 1 1 1111100 1268888999998 6666 44443333333
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=8.1e-06 Score=83.54 Aligned_cols=72 Identities=19% Similarity=0.174 Sum_probs=56.0
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEE
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 412 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~ 412 (528)
+.+|.+|||+||+|||+|..++++ +++|+|||+.+-. ..+. ..+ +|+++.+|+..+.+. ...||.|++
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~r---g~~V~aVD~~~l~-----~~l~--~~~-~V~~~~~d~~~~~~~-~~~~D~vvs 276 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKR---NMWVYSVDNGPMA-----QSLM--DTG-QVTWLREDGFKFRPT-RSNISWMVC 276 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHT---TCEEEEECSSCCC-----HHHH--TTT-CEEEECSCTTTCCCC-SSCEEEEEE
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHC---CCEEEEEEhhhcC-----hhhc--cCC-CeEEEeCccccccCC-CCCcCEEEE
Confidence 568999999999999999999886 5799999986421 1111 223 489999999887653 357999999
Q ss_pred cCCC
Q 009708 413 DAPC 416 (528)
Q Consensus 413 D~Pc 416 (528)
|.-+
T Consensus 277 Dm~~ 280 (375)
T 4auk_A 277 DMVE 280 (375)
T ss_dssp CCSS
T ss_pred cCCC
Confidence 9777
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=6.4e-06 Score=84.51 Aligned_cols=102 Identities=18% Similarity=0.156 Sum_probs=74.7
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEc
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLD 413 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D 413 (528)
.++.+|||+|||+|..+..+++.. +..+++++|+ +.+++.+++ .++ ++++.+|+.. . . + .||+|++.
T Consensus 192 ~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~-v~~~~~d~~~-~-~-~-~~D~v~~~ 258 (358)
T 1zg3_A 192 EGLESLVDVGGGTGGVTKLIHEIF-PHLKCTVFDQ-PQVVGNLTG------NEN-LNFVGGDMFK-S-I-P-SADAVLLK 258 (358)
T ss_dssp HTCSEEEEETCTTSHHHHHHHHHC-TTSEEEEEEC-HHHHSSCCC------CSS-EEEEECCTTT-C-C-C-CCSEEEEE
T ss_pred cCCCEEEEECCCcCHHHHHHHHHC-CCCeEEEecc-HHHHhhccc------CCC-cEEEeCccCC-C-C-C-CceEEEEc
Confidence 456799999999999999999985 4578999999 788766543 244 8999999976 2 1 2 49999974
Q ss_pred CCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcC---CCEEEEEcCCC
Q 009708 414 APCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKP---GGVLVYSTCSI 468 (528)
Q Consensus 414 ~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~Lkp---GG~LvysTcs~ 468 (528)
-.. .. +..... .++|+++.+.||| ||+|++.....
T Consensus 259 ~vl------h~-------~~d~~~-------~~~l~~~~~~L~p~~~gG~l~i~e~~~ 296 (358)
T 1zg3_A 259 WVL------HD-------WNDEQS-------LKILKNSKEAISHKGKDGKVIIIDISI 296 (358)
T ss_dssp SCG------GG-------SCHHHH-------HHHHHHHHHHTGGGGGGCEEEEEECEE
T ss_pred ccc------cC-------CCHHHH-------HHHHHHHHHhCCCCCCCcEEEEEEecc
Confidence 222 11 111221 3569999999999 99999876554
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=98.09 E-value=4.6e-05 Score=74.89 Aligned_cols=130 Identities=18% Similarity=0.150 Sum_probs=79.0
Q ss_pred CCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcC-ccccccccCCCCCCEE
Q 009708 332 DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA-DLRTFADNSTVKCDKV 410 (528)
Q Consensus 332 ~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~-D~~~~~~~~~~~fD~V 410 (528)
.+.++..|||+||+|||++..++.. .+...|+|+|+-..-.+.= ..++.++.. .|.+... |+..+.+ .++|.|
T Consensus 91 ~l~~~~~VlDLGaapGGwsq~~~~~-~gv~~V~avdvG~~~he~P-~~~~ql~w~-lV~~~~~~Dv~~l~~---~~~D~i 164 (321)
T 3lkz_A 91 FLEPVGKVIDLGCGRGGWCYYMATQ-KRVQEVRGYTKGGPGHEEP-QLVQSYGWN-IVTMKSGVDVFYRPS---ECCDTL 164 (321)
T ss_dssp SCCCCEEEEEETCTTCHHHHHHTTC-TTEEEEEEECCCSTTSCCC-CCCCBTTGG-GEEEECSCCTTSSCC---CCCSEE
T ss_pred CCCCCCEEEEeCCCCCcHHHHHHhh-cCCCEEEEEEcCCCCccCc-chhhhcCCc-ceEEEeccCHhhCCC---CCCCEE
Confidence 3567889999999999999988875 3445899999975521000 000122333 4778877 8877654 569999
Q ss_pred EEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCC-CEEEEEcCCCC-c--hhhHHHHHHHHhhCCC
Q 009708 411 LLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPG-GVLVYSTCSID-P--EENEERVEAFLLRHPE 486 (528)
Q Consensus 411 l~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpG-G~LvysTcs~~-~--~Ene~~v~~~l~~~~~ 486 (528)
+||.-- ++|. | .++..-. .+.|+-+-++|++| |.++ |.+. | ++-.+.++.+-.++.+
T Consensus 165 vcDige-Ss~~----~---------~ve~~Rt--l~vLel~~~wL~~~~~~f~---~KVl~pY~~~v~e~l~~lq~~fgg 225 (321)
T 3lkz_A 165 LCDIGE-SSSS----A---------EVEEHRT--IRVLEMVEDWLHRGPREFC---VKVLCPYMPKVIEKMELLQRRYGG 225 (321)
T ss_dssp EECCCC-CCSC----H---------HHHHHHH--HHHHHHHHHHHTTCCCEEE---EEESCTTSHHHHHHHHHHHHHHCC
T ss_pred EEECcc-CCCC----h---------hhhhhHH--HHHHHHHHHHhccCCCcEE---EEEcCCCChHHHHHHHHHHHHhCC
Confidence 999763 2232 1 1111111 12678888889888 8777 3433 2 3333444444444543
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=98.09 E-value=1.2e-06 Score=80.11 Aligned_cols=90 Identities=16% Similarity=0.210 Sum_probs=66.2
Q ss_pred cCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc--CCCCCC
Q 009708 331 VDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN--STVKCD 408 (528)
Q Consensus 331 l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~--~~~~fD 408 (528)
+++.+|++|||+|||. +++|+|+.+++.++++... .++++++|+.+++.. ..++||
T Consensus 8 ~g~~~g~~vL~~~~g~-----------------v~vD~s~~ml~~a~~~~~~-----~~~~~~~d~~~~~~~~~~~~~fD 65 (176)
T 2ld4_A 8 FGISAGQFVAVVWDKS-----------------SPVEALKGLVDKLQALTGN-----EGRVSVENIKQLLQSAHKESSFD 65 (176)
T ss_dssp TTCCTTSEEEEEECTT-----------------SCHHHHHHHHHHHHHHTTT-----TSEEEEEEGGGGGGGCCCSSCEE
T ss_pred cCCCCCCEEEEecCCc-----------------eeeeCCHHHHHHHHHhccc-----CcEEEEechhcCccccCCCCCEe
Confidence 3567899999999985 2389999999999887532 278899999887641 347899
Q ss_pred EEEEcCCCCCCccccCC-chhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 409 KVLLDAPCSGLGVLSKR-ADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 409 ~Vl~D~Pcsg~G~~~~~-pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
+|++.-. +..- ++ ...+|+++.++|||||++++.
T Consensus 66 ~V~~~~~------l~~~~~~----------------~~~~l~~~~r~LkpgG~l~~~ 100 (176)
T 2ld4_A 66 IILSGLV------PGSTTLH----------------SAEILAEIARILRPGGCLFLK 100 (176)
T ss_dssp EEEECCS------TTCCCCC----------------CHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEECCh------hhhcccC----------------HHHHHHHHHHHCCCCEEEEEE
Confidence 9997321 1111 11 134699999999999999974
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=98.02 E-value=5.9e-06 Score=80.99 Aligned_cols=119 Identities=16% Similarity=0.121 Sum_probs=76.0
Q ss_pred CCCCCCeEEEeCC------ccchHHHHHHHHcCCC-cEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCC
Q 009708 332 DPQPGQSIVDCCA------APGGKTLYMASCLSGQ-GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 404 (528)
Q Consensus 332 ~~~~g~~VLDl~a------G~G~kt~~la~~~~~~-~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~ 404 (528)
.+.-|.+|||+|| +||+. .+.+. .+. +.|+++|+.+-.. ..+ .++++|+..... .
T Consensus 106 ~vp~gmrVLDLGA~s~kg~APGS~--VLr~~-~p~g~~VVavDL~~~~s-----------da~--~~IqGD~~~~~~--~ 167 (344)
T 3r24_A 106 AVPYNMRVIHFGAGSDKGVAPGTA--VLRQW-LPTGTLLVDSDLNDFVS-----------DAD--STLIGDCATVHT--A 167 (344)
T ss_dssp CCCTTCEEEEESCCCTTSBCHHHH--HHHHH-SCTTCEEEEEESSCCBC-----------SSS--EEEESCGGGEEE--S
T ss_pred eecCCCEEEeCCCCCCCCCCCcHH--HHHHh-CCCCcEEEEeeCccccc-----------CCC--eEEEcccccccc--C
Confidence 3556899999996 99993 33343 454 5999999986431 122 348999876543 3
Q ss_pred CCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHHHh
Q 009708 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLL 482 (528)
Q Consensus 405 ~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~l~ 482 (528)
.+||+||+|.....+|.... + ...+ ..+.++ .++-|.+.|+|||.++ |.++..+.++.+....+
T Consensus 168 ~k~DLVISDMAPNtTG~~D~--d--~~Rs-~~L~El------ALdfA~~~LkpGGsFv---VKVFQGsg~~~L~~lrk 231 (344)
T 3r24_A 168 NKWDLIISDMYDPRTKHVTK--E--NDSK-EGFFTY------LCGFIKQKLALGGSIA---VKITEHSWNADLYKLMG 231 (344)
T ss_dssp SCEEEEEECCCCTTSCSSCS--C--CCCC-CTHHHH------HHHHHHHHEEEEEEEE---EEECSSSCCHHHHHHHT
T ss_pred CCCCEEEecCCCCcCCcccc--c--hhHH-HHHHHH------HHHHHHHhCcCCCEEE---EEEecCCCHHHHHHHHh
Confidence 78999999966655565211 1 0001 122222 5788899999999999 55555554444544443
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00011 Score=75.85 Aligned_cols=81 Identities=17% Similarity=0.337 Sum_probs=60.4
Q ss_pred CeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc-------CCCCCCE
Q 009708 337 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-------STVKCDK 409 (528)
Q Consensus 337 ~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~-------~~~~fD~ 409 (528)
-+|||+|||.||.++.+.+. +-..|.++|+++.+++..+.|.. + ..++++|+.++... ....+|+
T Consensus 3 ~~vidLFsG~GGlslG~~~a--G~~~v~avE~d~~a~~t~~~N~~-----~-~~~~~~DI~~~~~~~~~~~~~~~~~~D~ 74 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARA--GFDVKMAVEIDQHAINTHAINFP-----R-SLHVQEDVSLLNAEIIKGFFKNDMPIDG 74 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHH--TCEEEEEECSCHHHHHHHHHHCT-----T-SEEECCCGGGCCHHHHHHHHCSCCCCCE
T ss_pred CeEEEEccCcCHHHHHHHHC--CCcEEEEEeCCHHHHHHHHHhCC-----C-CceEecChhhcCHHHHHhhcccCCCeeE
Confidence 37999999999999988775 33457799999999999888742 2 46788999876431 1357999
Q ss_pred EEEcCCCCCCccccCC
Q 009708 410 VLLDAPCSGLGVLSKR 425 (528)
Q Consensus 410 Vl~D~Pcsg~G~~~~~ 425 (528)
|+.+|||.+.....+.
T Consensus 75 i~ggpPCQ~fS~ag~~ 90 (376)
T 3g7u_A 75 IIGGPPCQGFSSIGKG 90 (376)
T ss_dssp EEECCCCCTTC-----
T ss_pred EEecCCCCCcccccCC
Confidence 9999999887766543
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=97.82 E-value=5.2e-05 Score=76.98 Aligned_cols=80 Identities=21% Similarity=0.359 Sum_probs=63.0
Q ss_pred CCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAP 415 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~P 415 (528)
+-+|+|+|||.||.++.+.+. +-..|+++|+++.+++..+.|.... .++|+.++....-..+|+|+.+||
T Consensus 11 ~~~~~dLFaG~Gg~~~g~~~a--G~~~v~~~e~d~~a~~t~~~N~~~~--------~~~Di~~~~~~~~~~~D~l~~gpP 80 (327)
T 2c7p_A 11 GLRFIDLFAGLGGFRLALESC--GAECVYSNEWDKYAQEVYEMNFGEK--------PEGDITQVNEKTIPDHDILCAGFP 80 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHHT--TCEEEEEECCCHHHHHHHHHHHSCC--------CBSCGGGSCGGGSCCCSEEEEECC
T ss_pred CCcEEEECCCcCHHHHHHHHC--CCeEEEEEeCCHHHHHHHHHHcCCC--------CcCCHHHcCHhhCCCCCEEEECCC
Confidence 458999999999999988764 3456889999999999999987421 168888775443346999999999
Q ss_pred CCCCccccCC
Q 009708 416 CSGLGVLSKR 425 (528)
Q Consensus 416 csg~G~~~~~ 425 (528)
|.+....++.
T Consensus 81 CQ~fS~ag~~ 90 (327)
T 2c7p_A 81 CQAFSISGKQ 90 (327)
T ss_dssp CTTTCTTSCC
T ss_pred CCCcchhccc
Confidence 9887766553
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=97.74 E-value=3.6e-05 Score=68.18 Aligned_cols=88 Identities=15% Similarity=0.181 Sum_probs=64.6
Q ss_pred CCCCeEEEeCCccc-hHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEE-E
Q 009708 334 QPGQSIVDCCAAPG-GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKV-L 411 (528)
Q Consensus 334 ~~g~~VLDl~aG~G-~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~V-l 411 (528)
.++++|||+|||+| ..+..|++. .+..|+|+|+++..+. +++.|+++.....-..||+| .
T Consensus 34 ~~~~rVlEVG~G~g~~vA~~La~~--~g~~V~atDInp~Av~----------------~v~dDiF~P~~~~Y~~~DLIYs 95 (153)
T 2k4m_A 34 GPGTRVVEVGAGRFLYVSDYIRKH--SKVDLVLTDIKPSHGG----------------IVRDDITSPRMEIYRGAALIYS 95 (153)
T ss_dssp CSSSEEEEETCTTCCHHHHHHHHH--SCCEEEEECSSCSSTT----------------EECCCSSSCCHHHHTTEEEEEE
T ss_pred CCCCcEEEEccCCChHHHHHHHHh--CCCeEEEEECCccccc----------------eEEccCCCCcccccCCcCEEEE
Confidence 34679999999999 599999874 2467999999998875 78899987443222479999 8
Q ss_pred EcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 412 LDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 412 ~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
++||- ++|.-+++-|.+. |.-|++-+-+
T Consensus 96 irPP~-------------------------El~~~i~~lA~~v---~adliI~pL~ 123 (153)
T 2k4m_A 96 IRPPA-------------------------EIHSSLMRVADAV---GARLIIKPLT 123 (153)
T ss_dssp ESCCT-------------------------TTHHHHHHHHHHH---TCEEEEECBT
T ss_pred cCCCH-------------------------HHHHHHHHHHHHc---CCCEEEEcCC
Confidence 88887 3455667666665 5667755443
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=97.71 E-value=2.5e-05 Score=79.85 Aligned_cols=81 Identities=14% Similarity=0.244 Sum_probs=56.0
Q ss_pred CeEEEeCCccchHHHHHHHHcCC-CcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC-C-CCCCEEEEc
Q 009708 337 QSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS-T-VKCDKVLLD 413 (528)
Q Consensus 337 ~~VLDl~aG~G~kt~~la~~~~~-~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~-~-~~fD~Vl~D 413 (528)
.+|||++||.||.++.+... +- ...|+++|+++.+++..+.|... ..++++|+.++.... . ..+|+|+.+
T Consensus 3 ~~v~dLFaG~Gg~~~g~~~~-G~~~~~v~~~E~d~~a~~~~~~N~~~------~~~~~~Di~~~~~~~~~~~~~D~l~~g 75 (343)
T 1g55_A 3 LRVLELYSGVGGMHHALRES-CIPAQVVAAIDVNTVANEVYKYNFPH------TQLLAKTIEGITLEEFDRLSFDMILMS 75 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHH-TCSEEEEEEECCCHHHHHHHHHHCTT------SCEECSCGGGCCHHHHHHHCCSEEEEC
T ss_pred CeEEEeCcCccHHHHHHHHC-CCCceEEEEEeCCHHHHHHHHHhccc------cccccCCHHHccHhHcCcCCcCEEEEc
Confidence 47999999999999988875 11 13699999999999999988632 246788988765321 1 269999999
Q ss_pred CCCCCCccccC
Q 009708 414 APCSGLGVLSK 424 (528)
Q Consensus 414 ~Pcsg~G~~~~ 424 (528)
|||.+....++
T Consensus 76 pPCq~fS~ag~ 86 (343)
T 1g55_A 76 PPCQPFTRIGR 86 (343)
T ss_dssp CC---------
T ss_pred CCCcchhhcCC
Confidence 99988776544
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00046 Score=68.83 Aligned_cols=48 Identities=13% Similarity=0.111 Sum_probs=42.8
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcC
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQ 384 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g 384 (528)
.+|+.|||+|||+|..++.++.+ +.+++|+|+++.+++.++++++...
T Consensus 234 ~~~~~vlD~f~GsGt~~~~a~~~---g~~~~g~e~~~~~~~~a~~r~~~~~ 281 (297)
T 2zig_A 234 FVGDVVLDPFAGTGTTLIAAARW---GRRALGVELVPRYAQLAKERFAREV 281 (297)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHS
T ss_pred CCCCEEEECCCCCCHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHHHHhc
Confidence 67899999999999999887764 4689999999999999999998763
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0009 Score=67.48 Aligned_cols=78 Identities=15% Similarity=0.322 Sum_probs=61.7
Q ss_pred eEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcCCCC
Q 009708 338 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCS 417 (528)
Q Consensus 338 ~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~Pcs 417 (528)
+|||++||.||.++-+-+. +--.|.|+|+++.+++..+.|. ++ .++++|+.++....-..+|+|+.-|||.
T Consensus 2 kvidLFsG~GG~~~G~~~a--G~~~v~a~e~d~~a~~ty~~N~-----~~--~~~~~DI~~i~~~~~~~~D~l~ggpPCQ 72 (331)
T 3ubt_Y 2 NLISLFSGAGGLDLGFQKA--GFRIICANEYDKSIWKTYESNH-----SA--KLIKGDISKISSDEFPKCDGIIGGPPSQ 72 (331)
T ss_dssp EEEEESCTTCHHHHHHHHT--TCEEEEEEECCTTTHHHHHHHC-----CS--EEEESCGGGCCGGGSCCCSEEECCCCGG
T ss_pred eEEEeCcCccHHHHHHHHC--CCEEEEEEeCCHHHHHHHHHHC-----CC--CcccCChhhCCHhhCCcccEEEecCCCC
Confidence 6999999999999877653 2335789999999999988874 32 4678999987655445799999999998
Q ss_pred CCccccC
Q 009708 418 GLGVLSK 424 (528)
Q Consensus 418 g~G~~~~ 424 (528)
+....++
T Consensus 73 ~fS~ag~ 79 (331)
T 3ubt_Y 73 SWSEGGS 79 (331)
T ss_dssp GTEETTE
T ss_pred CcCCCCC
Confidence 8766554
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0021 Score=65.05 Aligned_cols=80 Identities=18% Similarity=0.310 Sum_probs=59.1
Q ss_pred CeEEEeCCccchHHHHHHHHcCC-CcEE-EEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC--CCCCCEEEE
Q 009708 337 QSIVDCCAAPGGKTLYMASCLSG-QGLV-YAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS--TVKCDKVLL 412 (528)
Q Consensus 337 ~~VLDl~aG~G~kt~~la~~~~~-~~~v-~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~--~~~fD~Vl~ 412 (528)
-+|+|+|||.||.++.+.+. +- ...| .|+|+++.+++..+.|.... ++++|+.++.... ...+|+|+.
T Consensus 11 ~~vidLFaG~GG~~~G~~~a-G~~~~~v~~a~e~d~~a~~ty~~N~~~~-------~~~~DI~~~~~~~i~~~~~Dil~g 82 (327)
T 3qv2_A 11 VNVIEFFSGIGGLRSSYERS-SININATFIPFDINEIANKIYSKNFKEE-------VQVKNLDSISIKQIESLNCNTWFM 82 (327)
T ss_dssp EEEEEETCTTTHHHHHHHHS-SCCCCEEEEEECCCHHHHHHHHHHHCCC-------CBCCCTTTCCHHHHHHTCCCEEEE
T ss_pred CEEEEECCChhHHHHHHHHc-CCCceEEEEEEECCHHHHHHHHHHCCCC-------cccCChhhcCHHHhccCCCCEEEe
Confidence 47999999999999888763 21 1346 79999999999999886321 4677887764321 126999999
Q ss_pred cCCCCCC--ccccC
Q 009708 413 DAPCSGL--GVLSK 424 (528)
Q Consensus 413 D~Pcsg~--G~~~~ 424 (528)
.|||.+. ....+
T Consensus 83 gpPCQ~fs~S~ag~ 96 (327)
T 3qv2_A 83 SPPCQPYNNSIMSK 96 (327)
T ss_dssp CCCCTTCSHHHHTT
T ss_pred cCCccCcccccCCC
Confidence 9999987 44433
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00076 Score=65.89 Aligned_cols=49 Identities=14% Similarity=0.240 Sum_probs=41.4
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCC
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQV 385 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~ 385 (528)
.+|+.|||.+||+|..+..+.++ +.+++++|+++..++.+++|++.+++
T Consensus 211 ~~~~~vlD~f~GsGtt~~~a~~~---gr~~ig~e~~~~~~~~~~~r~~~~~~ 259 (260)
T 1g60_A 211 NPNDLVLDCFMGSGTTAIVAKKL---GRNFIGCDMNAEYVNQANFVLNQLEI 259 (260)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHC---
T ss_pred CCCCEEEECCCCCCHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHHHhccC
Confidence 67999999999999988877764 46899999999999999999987664
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0016 Score=64.88 Aligned_cols=82 Identities=12% Similarity=0.106 Sum_probs=60.9
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcE-EEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC---CCCCCEE
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGL-VYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS---TVKCDKV 410 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~-v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~---~~~fD~V 410 (528)
.+-+|+|++||.||.++.+.+. +-... |+++|+++.+++..+.|. ++ ..++++|+.++.... ...+|+|
T Consensus 15 ~~~~vidLFaG~GG~~~g~~~a-G~~~~~v~a~E~d~~a~~ty~~N~-----~~-~~~~~~DI~~i~~~~i~~~~~~Dll 87 (295)
T 2qrv_A 15 KPIRVLSLFDGIATGLLVLKDL-GIQVDRYIASEVCEDSITVGMVRH-----QG-KIMYVGDVRSVTQKHIQEWGPFDLV 87 (295)
T ss_dssp CCEEEEEETCTTTHHHHHHHHT-TBCEEEEEEECCCHHHHHHHHHHT-----TT-CEEEECCGGGCCHHHHHHTCCCSEE
T ss_pred CCCEEEEeCcCccHHHHHHHHC-CCccceEEEEECCHHHHHHHHHhC-----CC-CceeCCChHHccHHHhcccCCcCEE
Confidence 3558999999999999887764 21122 699999999999888774 22 346788998765321 2469999
Q ss_pred EEcCCCCCCcccc
Q 009708 411 LLDAPCSGLGVLS 423 (528)
Q Consensus 411 l~D~Pcsg~G~~~ 423 (528)
+..|||.+....+
T Consensus 88 ~ggpPCQ~fS~ag 100 (295)
T 2qrv_A 88 IGGSPCNDLSIVN 100 (295)
T ss_dssp EECCCCGGGBTTC
T ss_pred EecCCCccccccC
Confidence 9999997766654
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0014 Score=66.53 Aligned_cols=80 Identities=16% Similarity=0.266 Sum_probs=59.9
Q ss_pred eEEEeCCccchHHHHHHHHcCCC-cEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC--CCCCCEEEEcC
Q 009708 338 SIVDCCAAPGGKTLYMASCLSGQ-GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS--TVKCDKVLLDA 414 (528)
Q Consensus 338 ~VLDl~aG~G~kt~~la~~~~~~-~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~--~~~fD~Vl~D~ 414 (528)
+|+|+|||.||.++.+.+. +-. ..|.|+|+++.+++..+.|... ..++++|+.++.... ...+|+++..|
T Consensus 5 ~~idLFaG~GG~~~G~~~a-G~~~~~v~a~e~d~~a~~ty~~N~~~------~~~~~~DI~~~~~~~~~~~~~D~l~ggp 77 (333)
T 4h0n_A 5 KILELYSGIGGMHCAWKES-GLDGEIVAAVDINTVANSVYKHNFPE------TNLLNRNIQQLTPQVIKKWNVDTILMSP 77 (333)
T ss_dssp EEEEETCTTTHHHHHHHHH-TCSEEEEEEECCCHHHHHHHHHHCTT------SCEECCCGGGCCHHHHHHTTCCEEEECC
T ss_pred EEEEECcCccHHHHHHHHc-CCCceEEEEEeCCHHHHHHHHHhCCC------CceeccccccCCHHHhccCCCCEEEecC
Confidence 7999999999999888764 211 3478999999999998887532 235678888765322 13699999999
Q ss_pred CCCCCccccC
Q 009708 415 PCSGLGVLSK 424 (528)
Q Consensus 415 Pcsg~G~~~~ 424 (528)
||.+.....+
T Consensus 78 PCQ~fS~ag~ 87 (333)
T 4h0n_A 78 PCQPFTRNGK 87 (333)
T ss_dssp CCCCSEETTE
T ss_pred CCcchhhhhh
Confidence 9988765543
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=96.77 E-value=0.002 Score=65.79 Aligned_cols=81 Identities=9% Similarity=0.089 Sum_probs=61.3
Q ss_pred ceeEeecch-HHHHHHhcCCCC------CCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCc
Q 009708 315 GLCAVQDES-AGLVVAVVDPQP------GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS 387 (528)
Q Consensus 315 G~~~~Qd~~-s~l~~~~l~~~~------g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~ 387 (528)
|+-++.|+. ..-++..+++.+ ++.|||+|.|+|..|..|++... ..+|+++|+++..+..+++.. . .+
T Consensus 31 GQnFL~d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~-~~~vvavE~D~~l~~~L~~~~-~--~~- 105 (353)
T 1i4w_A 31 GFKYLWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYC-PRQYSLLEKRSSLYKFLNAKF-E--GS- 105 (353)
T ss_dssp GCCCBCCHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHC-CSEEEEECCCHHHHHHHHHHT-T--TS-
T ss_pred CcCccCCHHHHHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCC-CCEEEEEecCHHHHHHHHHhc-c--CC-
Confidence 443444444 455666666653 58999999999999999998632 358999999999999998876 2 23
Q ss_pred cEEEEcCcccccc
Q 009708 388 VIRTIHADLRTFA 400 (528)
Q Consensus 388 ~i~~~~~D~~~~~ 400 (528)
+++++++|+..+.
T Consensus 106 ~l~ii~~D~l~~~ 118 (353)
T 1i4w_A 106 PLQILKRDPYDWS 118 (353)
T ss_dssp SCEEECSCTTCHH
T ss_pred CEEEEECCccchh
Confidence 5899999997764
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.013 Score=58.33 Aligned_cols=131 Identities=18% Similarity=0.131 Sum_probs=81.7
Q ss_pred CeEEEeCCccchHHHHHH---HHcCCCc--EEEEEcCChH--------HHH-HHHHHHHHc----CCCccEEEEcCcccc
Q 009708 337 QSIVDCCAAPGGKTLYMA---SCLSGQG--LVYAIDINKG--------RLR-ILNETAKLH----QVNSVIRTIHADLRT 398 (528)
Q Consensus 337 ~~VLDl~aG~G~kt~~la---~~~~~~~--~v~avD~s~~--------~l~-~~~~n~~~~----g~~~~i~~~~~D~~~ 398 (528)
-+|||+|-|+|...+... ...++.. +.+++|..+- .+. ..+...... +-.-.++++.+|+..
T Consensus 98 ~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa~~ 177 (308)
T 3vyw_A 98 IRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDARK 177 (308)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCHHH
T ss_pred cEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechHHH
Confidence 479999999998664333 2224444 4577776321 111 222222222 111125678899987
Q ss_pred ccccC-CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHH
Q 009708 399 FADNS-TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERV 477 (528)
Q Consensus 399 ~~~~~-~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v 477 (528)
..+.. ..+||+|++|+=. -.++|++ |. .++++.++++++|||+|+--||+ ..|
T Consensus 178 ~l~~l~~~~~Da~flDgFs-----P~kNPeL-Ws-------------~e~f~~l~~~~~pgg~laTYtaa-------g~V 231 (308)
T 3vyw_A 178 RIKEVENFKADAVFHDAFS-----PYKNPEL-WT-------------LDFLSLIKERIDEKGYWVSYSSS-------LSV 231 (308)
T ss_dssp HGGGCCSCCEEEEEECCSC-----TTTSGGG-GS-------------HHHHHHHHTTEEEEEEEEESCCC-------HHH
T ss_pred HHhhhcccceeEEEeCCCC-----cccCccc-CC-------------HHHHHHHHHHhCCCcEEEEEeCc-------HHH
Confidence 65543 3479999999622 3467874 43 45789999999999999865554 356
Q ss_pred HHHHhhCCCceEecCCC
Q 009708 478 EAFLLRHPEFSIDPADG 494 (528)
Q Consensus 478 ~~~l~~~~~~~~~~~~~ 494 (528)
..-|... +|++..+++
T Consensus 232 RR~L~~a-GF~V~k~~G 247 (308)
T 3vyw_A 232 RKSLLTL-GFKVGSSRE 247 (308)
T ss_dssp HHHHHHT-TCEEEEEEC
T ss_pred HHHHHHC-CCEEEecCC
Confidence 7777764 687776654
|
| >3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0019 Score=68.71 Aligned_cols=84 Identities=19% Similarity=0.265 Sum_probs=57.9
Q ss_pred CCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc-------------
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN------------- 402 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~------------- 402 (528)
.-+|+|+|||.||.++-+.+. +-..|.++|+++.+++..+.|.... ++ ..++++|+.++...
T Consensus 88 ~~~viDLFaG~GGlslG~~~a--G~~~v~avE~d~~A~~ty~~N~~~~--p~-~~~~~~DI~~i~~~~~~~~~~~~~~~~ 162 (482)
T 3me5_A 88 AFRFIDLFAGIGGIRRGFESI--GGQCVFTSEWNKHAVRTYKANHYCD--PA-THHFNEDIRDITLSHQEGVSDEAAAEH 162 (482)
T ss_dssp SEEEEEESCTTSHHHHHHHTT--TEEEEEEECCCHHHHHHHHHHSCCC--TT-TCEEESCTHHHHCTTCTTSCHHHHHHH
T ss_pred cceEEEecCCccHHHHHHHHC--CCEEEEEEeCCHHHHHHHHHhcccC--CC-cceeccchhhhhhccccccchhhHHhh
Confidence 347999999999999887653 2234899999999999888775221 11 34567888776421
Q ss_pred ---CCCCCCEEEEcCCCCCCccccC
Q 009708 403 ---STVKCDKVLLDAPCSGLGVLSK 424 (528)
Q Consensus 403 ---~~~~fD~Vl~D~Pcsg~G~~~~ 424 (528)
....+|+|+..|||.+....++
T Consensus 163 i~~~~~~~Dvl~gGpPCQ~FS~AG~ 187 (482)
T 3me5_A 163 IRQHIPEHDVLLAGFPCQPFSLAGV 187 (482)
T ss_dssp HHHHSCCCSEEEEECCCCCC-----
T ss_pred hhhcCCCCCEEEecCCCcchhhhCc
Confidence 1246899999999988766543
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0041 Score=62.81 Aligned_cols=102 Identities=20% Similarity=0.258 Sum_probs=67.3
Q ss_pred HhcCCCCCCeEEEeCCcc-chHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCC
Q 009708 329 AVVDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC 407 (528)
Q Consensus 329 ~~l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~f 407 (528)
....+++|++||-.|||+ |..++++|+.++ .+|+++|.++++++.++ .+|.+..+.....|.........+.+
T Consensus 160 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~----~lGa~~~i~~~~~~~~~~~~~~~g~~ 233 (340)
T 3s2e_A 160 KVTDTRPGQWVVISGIGGLGHVAVQYARAMG--LRVAAVDIDDAKLNLAR----RLGAEVAVNARDTDPAAWLQKEIGGA 233 (340)
T ss_dssp HTTTCCTTSEEEEECCSTTHHHHHHHHHHTT--CEEEEEESCHHHHHHHH----HTTCSEEEETTTSCHHHHHHHHHSSE
T ss_pred HHcCCCCCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHH----HcCCCEEEeCCCcCHHHHHHHhCCCC
Confidence 345678999999999876 778888888753 59999999999988764 46766422111112211111112368
Q ss_pred CEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 408 DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 408 D~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
|.|+.. +|.+ ..+..+++.|++||+++..
T Consensus 234 d~vid~---~g~~-------------------------~~~~~~~~~l~~~G~iv~~ 262 (340)
T 3s2e_A 234 HGVLVT---AVSP-------------------------KAFSQAIGMVRRGGTIALN 262 (340)
T ss_dssp EEEEES---SCCH-------------------------HHHHHHHHHEEEEEEEEEC
T ss_pred CEEEEe---CCCH-------------------------HHHHHHHHHhccCCEEEEe
Confidence 988763 2211 1377888999999999864
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0069 Score=63.14 Aligned_cols=67 Identities=16% Similarity=0.166 Sum_probs=53.3
Q ss_pred cCCCCCCeEEEeCCccchHHHHHH-HHcCCCcEEEEEcCChHHHHHHHHHHHH--c-CCCccEEEEcCccc
Q 009708 331 VDPQPGQSIVDCCAAPGGKTLYMA-SCLSGQGLVYAIDINKGRLRILNETAKL--H-QVNSVIRTIHADLR 397 (528)
Q Consensus 331 l~~~~g~~VLDl~aG~G~kt~~la-~~~~~~~~v~avD~s~~~l~~~~~n~~~--~-g~~~~i~~~~~D~~ 397 (528)
+.+.+++.|+|+||+.|..++.++ ...++.++|+|+|.+|..++.+++|++. + +.+.++++++.-+.
T Consensus 222 ~~l~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al~ 292 (409)
T 2py6_A 222 LRFSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGAG 292 (409)
T ss_dssp CCCCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEEC
T ss_pred cccCCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEEE
Confidence 345789999999999999999988 4433348999999999999999999998 3 45134777765443
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0098 Score=57.90 Aligned_cols=125 Identities=14% Similarity=0.123 Sum_probs=83.4
Q ss_pred CCCeEEEeCCccchHHHHHHHHc------CCCcEEEEEcC-----Ch----------------------HHHHH---HHH
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCL------SGQGLVYAIDI-----NK----------------------GRLRI---LNE 378 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~------~~~~~v~avD~-----s~----------------------~~l~~---~~~ 378 (528)
|| .|+++|+..|+.+..++... +...+|+++|. .+ +.++. ..+
T Consensus 70 pG-~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~ 148 (257)
T 3tos_A 70 PG-VIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHE 148 (257)
T ss_dssp CS-EEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHH
T ss_pred CC-eEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHh
Confidence 45 89999999999988877532 23578999992 21 11221 122
Q ss_pred HHHHcCC-CccEEEEcCcccccccc-----CCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHh
Q 009708 379 TAKLHQV-NSVIRTIHADLRTFADN-----STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAAS 452 (528)
Q Consensus 379 n~~~~g~-~~~i~~~~~D~~~~~~~-----~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~ 452 (528)
|.+++|. .++|+++.+++.+..+. ...+||.|++|.-. ..-....++.++
T Consensus 149 ~~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~------------------------Y~~t~~~le~~~ 204 (257)
T 3tos_A 149 CSDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDL------------------------YEPTKAVLEAIR 204 (257)
T ss_dssp TTSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCC------------------------HHHHHHHHHHHG
T ss_pred hhhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcc------------------------cchHHHHHHHHH
Confidence 3335666 36799999999875443 23479999999643 011234578889
Q ss_pred ccCcCCCEEEEEcCCC--CchhhHHHHHHHHhhCC
Q 009708 453 LLVKPGGVLVYSTCSI--DPEENEERVEAFLLRHP 485 (528)
Q Consensus 453 ~~LkpGG~LvysTcs~--~~~Ene~~v~~~l~~~~ 485 (528)
..|+|||+||+-.+.. .+.+ .+.+.+|+..+.
T Consensus 205 p~l~~GGvIv~DD~~~~~w~G~-~~A~~ef~~~~~ 238 (257)
T 3tos_A 205 PYLTKGSIVAFDELDNPKWPGE-NIAMRKVLGLDH 238 (257)
T ss_dssp GGEEEEEEEEESSTTCTTCTHH-HHHHHHHTCTTS
T ss_pred HHhCCCcEEEEcCCCCCCChHH-HHHHHHHHhhCC
Confidence 9999999999888642 3433 356678887763
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0012 Score=73.55 Aligned_cols=128 Identities=16% Similarity=0.200 Sum_probs=82.8
Q ss_pred CCeEEEeCCccchHHHHHHHHcC-----------CCcEEEEEcCChHHHHHHHHHH--------------HHc-----C-
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLS-----------GQGLVYAIDINKGRLRILNETA--------------KLH-----Q- 384 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~-----------~~~~v~avD~s~~~l~~~~~n~--------------~~~-----g- 384 (528)
.-+|+|+|.|+|...+.+.+... ...+++++|..|-..+.+++.+ +.. |
T Consensus 59 ~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 138 (689)
T 3pvc_A 59 SCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAGC 138 (689)
T ss_dssp EEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSEE
T ss_pred ceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCCc
Confidence 45899999999998887766431 1257999999665554444322 211 1
Q ss_pred ----CC---ccEEEEcCccccccccC----CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhc
Q 009708 385 ----VN---SVIRTIHADLRTFADNS----TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASL 453 (528)
Q Consensus 385 ----~~---~~i~~~~~D~~~~~~~~----~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~ 453 (528)
++ -.++++.+|+.+..+.. ...||.+++|+-. -.++|++ |. .+++....+
T Consensus 139 ~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~-----p~~np~~-w~-------------~~~~~~l~~ 199 (689)
T 3pvc_A 139 HRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFA-----PAKNPDM-WN-------------EQLFNAMAR 199 (689)
T ss_dssp EEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSC-----C--CCTT-CS-------------HHHHHHHHH
T ss_pred eEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCC-----CCCChhh-hh-------------HHHHHHHHH
Confidence 11 14678889998766543 3679999999865 3467763 42 346777888
Q ss_pred cCcCCCEEEEEcCCCCchhhHHHHHHHHhhCCCceEe
Q 009708 454 LVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSID 490 (528)
Q Consensus 454 ~LkpGG~LvysTcs~~~~Ene~~v~~~l~~~~~~~~~ 490 (528)
++++||++...+|. ..|...|.+. +|.+.
T Consensus 200 ~~~~g~~~~t~~~~-------~~vr~~l~~a-Gf~~~ 228 (689)
T 3pvc_A 200 MTRPGGTFSTFTAA-------GFVRRGLQQA-GFNVT 228 (689)
T ss_dssp HEEEEEEEEESCCC-------HHHHHHHHHT-TCEEE
T ss_pred HhCCCCEEEeccCc-------HHHHHHHHhC-CeEEE
Confidence 99999998866665 2455555543 35443
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=96.37 E-value=0.015 Score=59.14 Aligned_cols=103 Identities=20% Similarity=0.302 Sum_probs=65.8
Q ss_pred HhcCCCCCCeEEEeCCcc-chHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEE---cCccc-cccccC
Q 009708 329 AVVDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTI---HADLR-TFADNS 403 (528)
Q Consensus 329 ~~l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~---~~D~~-~~~~~~ 403 (528)
...++++|++||-.|||+ |..++++|+.++ ..+|+++|.++.+++.++ .+|.+..+... ..|.. .+....
T Consensus 165 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~----~lGa~~vi~~~~~~~~~~~~~i~~~~ 239 (356)
T 1pl8_A 165 RRGGVTLGHKVLVCGAGPIGMVTLLVAKAMG-AAQVVVTDLSATRLSKAK----EIGADLVLQISKESPQEIARKVEGQL 239 (356)
T ss_dssp HHHTCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHH----HTTCSEEEECSSCCHHHHHHHHHHHH
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHH----HhCCCEEEcCcccccchHHHHHHHHh
Confidence 345788999999999876 667777777643 348999999999987764 46776322111 01111 111111
Q ss_pred CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 404 ~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
...||+||- |+|.. ..+..++++|++||+++..
T Consensus 240 ~~g~D~vid---~~g~~-------------------------~~~~~~~~~l~~~G~iv~~ 272 (356)
T 1pl8_A 240 GCKPEVTIE---CTGAE-------------------------ASIQAGIYATRSGGTLVLV 272 (356)
T ss_dssp TSCCSEEEE---CSCCH-------------------------HHHHHHHHHSCTTCEEEEC
T ss_pred CCCCCEEEE---CCCCh-------------------------HHHHHHHHHhcCCCEEEEE
Confidence 246999875 33211 1367788999999999864
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0076 Score=61.78 Aligned_cols=103 Identities=17% Similarity=0.202 Sum_probs=67.5
Q ss_pred HhcCCCCCCeEEEeCCcc-chHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccc----cC
Q 009708 329 AVVDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD----NS 403 (528)
Q Consensus 329 ~~l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~----~~ 403 (528)
....+++|++||=.|+|+ |..++++|+.++ ..+|+++|.++.+++.+++ +|.+..+.....|...... ..
T Consensus 176 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~i~~~~~~~ 250 (370)
T 4ej6_A 176 DLSGIKAGSTVAILGGGVIGLLTVQLARLAG-ATTVILSTRQATKRRLAEE----VGATATVDPSAGDVVEAIAGPVGLV 250 (370)
T ss_dssp HHHTCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCHHHHHHHHH----HTCSEEECTTSSCHHHHHHSTTSSS
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHH----cCCCEEECCCCcCHHHHHHhhhhcc
Confidence 456788999999999876 666777777643 3489999999999877654 6776422111222222111 11
Q ss_pred CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 404 ~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
.+.||+||- |+|.+ ..+..++++|++||+++..
T Consensus 251 ~gg~Dvvid---~~G~~-------------------------~~~~~~~~~l~~~G~vv~~ 283 (370)
T 4ej6_A 251 PGGVDVVIE---CAGVA-------------------------ETVKQSTRLAKAGGTVVIL 283 (370)
T ss_dssp TTCEEEEEE---CSCCH-------------------------HHHHHHHHHEEEEEEEEEC
T ss_pred CCCCCEEEE---CCCCH-------------------------HHHHHHHHHhccCCEEEEE
Confidence 247998874 44322 1377889999999998854
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.23 E-value=0.017 Score=59.30 Aligned_cols=129 Identities=15% Similarity=0.070 Sum_probs=69.7
Q ss_pred CCeEEEeCCccchHHHHHHHHc--------------CCCcEEEEEcCChHHHHHHHHHHHHcCC-----------CccEE
Q 009708 336 GQSIVDCCAAPGGKTLYMASCL--------------SGQGLVYAIDINKGRLRILNETAKLHQV-----------NSVIR 390 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~--------------~~~~~v~avD~s~~~l~~~~~n~~~~g~-----------~~~i~ 390 (528)
..+|+|+|||+|..|+.++..+ .+.-+|+..|+-..-...+=+.+....- ...--
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 4689999999999999875432 1345777777766655444333322100 00001
Q ss_pred EEcCcccccc--ccCCCCCCEEEEcCCCCCCccccCCchhh-------cc--------CCHHHHHH-----HHHHHHHHH
Q 009708 391 TIHADLRTFA--DNSTVKCDKVLLDAPCSGLGVLSKRADLR-------WN--------RRLEDMEE-----LKILQDELL 448 (528)
Q Consensus 391 ~~~~D~~~~~--~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~-------~~--------~~~~~~~~-----l~~~q~~lL 448 (528)
++.+....+- ..+.++||.|++. ...-.+.+.|+.. |+ .++. +.+ ..+....+|
T Consensus 133 f~~gvpgSFy~rlfP~~S~d~v~Ss---~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~-v~~ay~~Qf~~D~~~fL 208 (374)
T 3b5i_A 133 FVAGVPGSFYRRLFPARTIDFFHSA---FSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEK-TTTAYKRQFQADLAEFL 208 (374)
T ss_dssp EEEEEESCTTSCCSCTTCEEEEEEE---SCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHH-HHHHHHHHHHHHHHHHH
T ss_pred EEEecChhhhcccCCCcceEEEEec---ceeeeeccCchhhhccccccccCCceEeCCCCHH-HHHHHHHHHHHHHHHHH
Confidence 2222211111 0124678998864 2222333333211 11 1233 322 333445679
Q ss_pred HHHhccCcCCCEEEEEcCCC
Q 009708 449 DAASLLVKPGGVLVYSTCSI 468 (528)
Q Consensus 449 ~~a~~~LkpGG~LvysTcs~ 468 (528)
+.-.+.|+|||++|+++..-
T Consensus 209 ~~ra~eL~pGG~mvl~~~gr 228 (374)
T 3b5i_A 209 RARAAEVKRGGAMFLVCLGR 228 (374)
T ss_dssp HHHHHHEEEEEEEEEEEEEC
T ss_pred HHHHHHhCCCCEEEEEEecC
Confidence 99999999999999876643
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.041 Score=56.66 Aligned_cols=127 Identities=14% Similarity=-0.010 Sum_probs=72.2
Q ss_pred CCeEEEeCCccchHHHHHHHHc----------------CCCcEEEEEcCC-----------hHHHHHHHHHHHHcCCCcc
Q 009708 336 GQSIVDCCAAPGGKTLYMASCL----------------SGQGLVYAIDIN-----------KGRLRILNETAKLHQVNSV 388 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~----------------~~~~~v~avD~s-----------~~~l~~~~~n~~~~g~~~~ 388 (528)
.-+|+|+||++|..|+.+...+ .+.-+|+..|+- +...+.++ +..|-...
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~---~~~g~~~~ 129 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLE---KENGRKIG 129 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHH---HHTCCCTT
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhh---hhccCCCC
Confidence 3589999999999999887751 134578899987 33333321 22332111
Q ss_pred EEEEcCccccccc--cCCCCCCEEEEcCCCCCCccccCCchh-------hccC--------CHHHH-----HHHHHHHHH
Q 009708 389 IRTIHADLRTFAD--NSTVKCDKVLLDAPCSGLGVLSKRADL-------RWNR--------RLEDM-----EELKILQDE 446 (528)
Q Consensus 389 i~~~~~D~~~~~~--~~~~~fD~Vl~D~Pcsg~G~~~~~pd~-------~~~~--------~~~~~-----~~l~~~q~~ 446 (528)
--++.+....+-. .+.++||.|++.. ..--+.+.|+. .|++ ++..+ .+..+.-..
T Consensus 130 ~~f~~gvpgSFy~rlfp~~S~d~v~Ss~---aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~ 206 (384)
T 2efj_A 130 SCLIGAMPGSFYSRLFPEESMHFLHSCY---CLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTT 206 (384)
T ss_dssp SEEEEECCSCTTSCCSCTTCEEEEEEES---CTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHH
T ss_pred ceEEEecchhhhhccCCCCceEEEEecc---eeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHH
Confidence 2355554443321 1247899998742 22222333311 0111 12223 233444456
Q ss_pred HHHHHhccCcCCCEEEEEcCCC
Q 009708 447 LLDAASLLVKPGGVLVYSTCSI 468 (528)
Q Consensus 447 lL~~a~~~LkpGG~LvysTcs~ 468 (528)
+|+.-.+-|+|||++|..+...
T Consensus 207 FL~~Ra~eL~pGG~mvl~~~gr 228 (384)
T 2efj_A 207 FLRIHSEELISRGRMLLTFICK 228 (384)
T ss_dssp HHHHHHHHEEEEEEEEEEEECC
T ss_pred HHHHHHHHhccCCeEEEEEecC
Confidence 7999999999999999877654
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.14 E-value=0.012 Score=60.07 Aligned_cols=102 Identities=20% Similarity=0.214 Sum_probs=66.1
Q ss_pred hcCCCCCCeEEEeCCcc-chHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccc-ccccCCCCC
Q 009708 330 VVDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT-FADNSTVKC 407 (528)
Q Consensus 330 ~l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~-~~~~~~~~f 407 (528)
..++++|++||-.|||+ |..++++|+.++ ..+|+++|.++++++.++ .+|.+..+.....|..+ +.....+.|
T Consensus 185 ~~~~~~g~~VlV~GaG~vG~~a~qlak~~G-a~~Vi~~~~~~~~~~~a~----~lGa~~vi~~~~~~~~~~~~~~~~gg~ 259 (371)
T 1f8f_A 185 ALKVTPASSFVTWGAGAVGLSALLAAKVCG-ASIIIAVDIVESRLELAK----QLGATHVINSKTQDPVAAIKEITDGGV 259 (371)
T ss_dssp TTCCCTTCEEEEESCSHHHHHHHHHHHHHT-CSEEEEEESCHHHHHHHH----HHTCSEEEETTTSCHHHHHHHHTTSCE
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHHH----HcCCCEEecCCccCHHHHHHHhcCCCC
Confidence 45678999999999876 667778887653 347999999999988775 45765322111112211 111112369
Q ss_pred CEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 408 DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 408 D~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
|+||- |+|. ...+..+++.|++||+++..
T Consensus 260 D~vid---~~g~-------------------------~~~~~~~~~~l~~~G~iv~~ 288 (371)
T 1f8f_A 260 NFALE---STGS-------------------------PEILKQGVDALGILGKIAVV 288 (371)
T ss_dssp EEEEE---CSCC-------------------------HHHHHHHHHTEEEEEEEEEC
T ss_pred cEEEE---CCCC-------------------------HHHHHHHHHHHhcCCEEEEe
Confidence 98874 3321 11377889999999998854
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.019 Score=58.05 Aligned_cols=93 Identities=13% Similarity=0.022 Sum_probs=65.1
Q ss_pred hcCCCCCCeEEEeCCcc-chHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCC
Q 009708 330 VVDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCD 408 (528)
Q Consensus 330 ~l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD 408 (528)
...+++|++||-.|+|+ |..++++|+.++ .+|+++|.++++++.++ .+|.+. + + .|...+. ..+|
T Consensus 171 ~~~~~~g~~VlV~GaG~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~----~lGa~~-v--~-~~~~~~~----~~~D 236 (348)
T 3two_A 171 FSKVTKGTKVGVAGFGGLGSMAVKYAVAMG--AEVSVFARNEHKKQDAL----SMGVKH-F--Y-TDPKQCK----EELD 236 (348)
T ss_dssp HTTCCTTCEEEEESCSHHHHHHHHHHHHTT--CEEEEECSSSTTHHHHH----HTTCSE-E--E-SSGGGCC----SCEE
T ss_pred hcCCCCCCEEEEECCcHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHH----hcCCCe-e--c-CCHHHHh----cCCC
Confidence 34788999999999876 667777887643 58999999999988764 478764 2 2 3332221 2699
Q ss_pred EEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 409 KVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 409 ~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
+||- |.|... .+..+++.|++||+++..
T Consensus 237 ~vid---~~g~~~-------------------------~~~~~~~~l~~~G~iv~~ 264 (348)
T 3two_A 237 FIIS---TIPTHY-------------------------DLKDYLKLLTYNGDLALV 264 (348)
T ss_dssp EEEE---CCCSCC-------------------------CHHHHHTTEEEEEEEEEC
T ss_pred EEEE---CCCcHH-------------------------HHHHHHHHHhcCCEEEEE
Confidence 8874 333220 177789999999998854
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0072 Score=61.35 Aligned_cols=103 Identities=19% Similarity=0.221 Sum_probs=65.7
Q ss_pred HhcCCCCCCeEEEeCCcc-chHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccc-c-CCC
Q 009708 329 AVVDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-N-STV 405 (528)
Q Consensus 329 ~~l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~-~-~~~ 405 (528)
....+++|++||=.|+|+ |..++++|+.+ +..+|+++|.++++++.++ .+|.+..+.....|..+... . ...
T Consensus 160 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~~Vi~~~~~~~~~~~~~----~lGa~~vi~~~~~~~~~~v~~~t~g~ 234 (352)
T 3fpc_A 160 ELANIKLGDTVCVIGIGPVGLMSVAGANHL-GAGRIFAVGSRKHCCDIAL----EYGATDIINYKNGDIVEQILKATDGK 234 (352)
T ss_dssp HHTTCCTTCCEEEECCSHHHHHHHHHHHTT-TCSSEEEECCCHHHHHHHH----HHTCCEEECGGGSCHHHHHHHHTTTC
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHH----HhCCceEEcCCCcCHHHHHHHHcCCC
Confidence 456788999999999876 66667777764 2347999999999987765 45765322111122221111 1 124
Q ss_pred CCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 406 ~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
.||+|+- |+|.. ..+..++++|++||+++..
T Consensus 235 g~D~v~d---~~g~~-------------------------~~~~~~~~~l~~~G~~v~~ 265 (352)
T 3fpc_A 235 GVDKVVI---AGGDV-------------------------HTFAQAVKMIKPGSDIGNV 265 (352)
T ss_dssp CEEEEEE---CSSCT-------------------------THHHHHHHHEEEEEEEEEC
T ss_pred CCCEEEE---CCCCh-------------------------HHHHHHHHHHhcCCEEEEe
Confidence 6998874 33321 1377788999999998843
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0093 Score=61.70 Aligned_cols=116 Identities=18% Similarity=0.167 Sum_probs=67.0
Q ss_pred HhcCCCCCCeEEEeCCcc-chHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcc-cc-cccc-CC
Q 009708 329 AVVDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL-RT-FADN-ST 404 (528)
Q Consensus 329 ~~l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~-~~-~~~~-~~ 404 (528)
...++++|++||-.|||+ |..++++|+.++ ..+|+++|.++++++.++ .+|.+ .+.....|. .+ +... ..
T Consensus 179 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~----~lGa~-~i~~~~~~~~~~~~~~~~~g 252 (398)
T 2dph_A 179 VSAGVKPGSHVYIAGAGPVGRCAAAGARLLG-AACVIVGDQNPERLKLLS----DAGFE-TIDLRNSAPLRDQIDQILGK 252 (398)
T ss_dssp HHTTCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEEESCHHHHHHHH----TTTCE-EEETTSSSCHHHHHHHHHSS
T ss_pred HHcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHH----HcCCc-EEcCCCcchHHHHHHHHhCC
Confidence 345788999999999877 777888888753 348999999999987764 45752 222111222 11 1111 12
Q ss_pred CCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 405 ~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
..||+||- |+|.......++..+. .. ...+..++++|++||+++..
T Consensus 253 ~g~Dvvid---~~g~~~~~~~~~~~~~-~~----------~~~~~~~~~~l~~gG~iv~~ 298 (398)
T 2dph_A 253 PEVDCGVD---AVGFEAHGLGDEANTE-TP----------NGALNSLFDVVRAGGAIGIP 298 (398)
T ss_dssp SCEEEEEE---CSCTTCBCSGGGTTSB-CT----------THHHHHHHHHEEEEEEEECC
T ss_pred CCCCEEEE---CCCCcccccccccccc-cc----------HHHHHHHHHHHhcCCEEEEe
Confidence 36998874 3331110000000000 00 01367788999999998843
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0058 Score=60.78 Aligned_cols=77 Identities=22% Similarity=0.188 Sum_probs=47.5
Q ss_pred cEEEEcCccccccccC-CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcC
Q 009708 388 VIRTIHADLRTFADNS-TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466 (528)
Q Consensus 388 ~i~~~~~D~~~~~~~~-~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTc 466 (528)
.++++++|+.+..... .++||+|++|||+.........++.. ...............++..+.++|||||.|++...
T Consensus 21 ~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~--~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~ 98 (297)
T 2zig_A 21 VHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQL--GHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVG 98 (297)
T ss_dssp CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CC--HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhh--cccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEEC
Confidence 3689999999865432 46899999999995432211111100 00112222334456788999999999999886643
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.86 E-value=0.04 Score=55.77 Aligned_cols=102 Identities=15% Similarity=0.178 Sum_probs=64.9
Q ss_pred HhcCCCCCCeEEEeCCcc-chHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEc-Ccccc-ccccC--
Q 009708 329 AVVDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH-ADLRT-FADNS-- 403 (528)
Q Consensus 329 ~~l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~-~D~~~-~~~~~-- 403 (528)
...++++|++||-.|+|+ |..++++|+.+ +.+|+++|.++++++.++ .+|.+..+.... .|... +....
T Consensus 162 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~----~lGa~~~~~~~~~~~~~~~i~~~~~~ 235 (352)
T 1e3j_A 162 RRAGVQLGTTVLVIGAGPIGLVSVLAAKAY--GAFVVCTARSPRRLEVAK----NCGADVTLVVDPAKEEESSIIERIRS 235 (352)
T ss_dssp HHHTCCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHH----HTTCSEEEECCTTTSCHHHHHHHHHH
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHH----HhCCCEEEcCcccccHHHHHHHHhcc
Confidence 345788999999999865 55667777764 346999999999988765 467663221110 12211 11111
Q ss_pred --CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 404 --TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 404 --~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
...+|+||- |+|.. ..+..++++|++||+++..
T Consensus 236 ~~g~g~D~vid---~~g~~-------------------------~~~~~~~~~l~~~G~iv~~ 270 (352)
T 1e3j_A 236 AIGDLPNVTID---CSGNE-------------------------KCITIGINITRTGGTLMLV 270 (352)
T ss_dssp HSSSCCSEEEE---CSCCH-------------------------HHHHHHHHHSCTTCEEEEC
T ss_pred ccCCCCCEEEE---CCCCH-------------------------HHHHHHHHHHhcCCEEEEE
Confidence 246999875 32211 1367788999999999854
|
| >4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.049 Score=56.50 Aligned_cols=88 Identities=9% Similarity=0.071 Sum_probs=59.0
Q ss_pred eEEEeCCccchHHHHHHHHcCCCcE----EEEEcCChHHHHHHHHHHHHcCCC--cc-----------------------
Q 009708 338 SIVDCCAAPGGKTLYMASCLSGQGL----VYAIDINKGRLRILNETAKLHQVN--SV----------------------- 388 (528)
Q Consensus 338 ~VLDl~aG~G~kt~~la~~~~~~~~----v~avD~s~~~l~~~~~n~~~~g~~--~~----------------------- 388 (528)
+|+|+|||.||.+..+-+.-.+-.- |.++|+++.++...+.|....... ..
T Consensus 12 rvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid~~A~~ty~~n~~~~~~~~~~~~~~~l~~~s~d~k~~~~~~~i~~ 91 (403)
T 4dkj_A 12 KVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAIVSYVAIHSKNFNPKIERLDRDILSISNDSKMPISEYGIKK 91 (403)
T ss_dssp EEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCBHHHHHHHHHHHCSSCCCCCBCCCTTCCCCBSSSSSCCCHHHHHH
T ss_pred eEEEEecCcCHHHHHHHHhCCccccceeeEEEEecCHHHHHHHHHHcCCCcccchhhhhhhhhhcccccccccccccccc
Confidence 7999999999999887664100112 889999999999998887532100 00
Q ss_pred -----EE----------EEcCccccccccC-CCCCCEEEEcCCCCCCccccCC
Q 009708 389 -----IR----------TIHADLRTFADNS-TVKCDKVLLDAPCSGLGVLSKR 425 (528)
Q Consensus 389 -----i~----------~~~~D~~~~~~~~-~~~fD~Vl~D~Pcsg~G~~~~~ 425 (528)
+. ...+|++++.... ++.+|+++.-|||.+....++.
T Consensus 92 l~~~~l~~i~~~~~~~~~~~~DI~~i~~~~ip~~vDll~ggpPCQ~fS~ag~~ 144 (403)
T 4dkj_A 92 INNTIKASYLNYAKKHFNNLFDIKKVNKDNFPKNIDIFTYSFPCQDLSVQGLQ 144 (403)
T ss_dssp HTTBHHHHHHHHHHHHSCBCCCGGGCCTTTSCSSCSEEEECCCCTTTCTTSCC
T ss_pred ccHHHHHHHHhhcccCCCcccchhhcCHhhCCCCCcEEEEeCCCCCHHHhCCC
Confidence 00 0246777664432 4457999999999887665543
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.84 E-value=0.032 Score=57.10 Aligned_cols=97 Identities=13% Similarity=0.121 Sum_probs=62.8
Q ss_pred cCCCCCCeEEEeCCcc-chHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCE
Q 009708 331 VDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDK 409 (528)
Q Consensus 331 l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~ 409 (528)
+.+++|++||-.|+|+ |..++++|+.+ +.+|+++|.++++++.+++ +|.+. ++..+-.++.......+|+
T Consensus 190 ~~~~~g~~VlV~GaG~vG~~aiqlak~~--Ga~Vi~~~~~~~~~~~a~~----lGa~~---vi~~~~~~~~~~~~~g~Dv 260 (369)
T 1uuf_A 190 WQAGPGKKVGVVGIGGLGHMGIKLAHAM--GAHVVAFTTSEAKREAAKA----LGADE---VVNSRNADEMAAHLKSFDF 260 (369)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHH----HTCSE---EEETTCHHHHHTTTTCEEE
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCCcE---EeccccHHHHHHhhcCCCE
Confidence 4678999999999875 66677777764 3579999999999887754 57653 2221111111111246898
Q ss_pred EEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 410 VLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 410 Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
||- |+|... .+..+++.|++||+++..
T Consensus 261 vid---~~g~~~-------------------------~~~~~~~~l~~~G~iv~~ 287 (369)
T 1uuf_A 261 ILN---TVAAPH-------------------------NLDDFTTLLKRDGTMTLV 287 (369)
T ss_dssp EEE---CCSSCC-------------------------CHHHHHTTEEEEEEEEEC
T ss_pred EEE---CCCCHH-------------------------HHHHHHHHhccCCEEEEe
Confidence 874 333210 156678889999988743
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=95.66 E-value=0.034 Score=56.88 Aligned_cols=103 Identities=17% Similarity=0.154 Sum_probs=65.1
Q ss_pred hcCCCCCCeEEEeCCcc-chHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEc--Ccccccc-ccCCC
Q 009708 330 VVDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH--ADLRTFA-DNSTV 405 (528)
Q Consensus 330 ~l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~--~D~~~~~-~~~~~ 405 (528)
..++++|++||-.|+|+ |..++++|+.++ ..+|+++|.++++++.++ .+|.+..+.... .|+.+.. ....+
T Consensus 190 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~----~lGa~~vi~~~~~~~~~~~~v~~~~~~ 264 (376)
T 1e3i_A 190 TAKVTPGSTCAVFGLGCVGLSAIIGCKIAG-ASRIIAIDINGEKFPKAK----ALGATDCLNPRELDKPVQDVITELTAG 264 (376)
T ss_dssp TSCCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHH----HTTCSEEECGGGCSSCHHHHHHHHHTS
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHH----HhCCcEEEccccccchHHHHHHHHhCC
Confidence 45678999999999865 556677777643 348999999999987764 467653111100 1111111 11123
Q ss_pred CCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCC-CEEEEEc
Q 009708 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPG-GVLVYST 465 (528)
Q Consensus 406 ~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpG-G~LvysT 465 (528)
.+|+||- |+|.. ..+..++++|++| |+++...
T Consensus 265 g~Dvvid---~~G~~-------------------------~~~~~~~~~l~~~~G~iv~~G 297 (376)
T 1e3i_A 265 GVDYSLD---CAGTA-------------------------QTLKAAVDCTVLGWGSCTVVG 297 (376)
T ss_dssp CBSEEEE---SSCCH-------------------------HHHHHHHHTBCTTTCEEEECC
T ss_pred CccEEEE---CCCCH-------------------------HHHHHHHHHhhcCCCEEEEEC
Confidence 7998874 33311 1377889999999 9998543
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=95.65 E-value=0.033 Score=56.93 Aligned_cols=102 Identities=13% Similarity=0.106 Sum_probs=65.1
Q ss_pred hcCCCCCCeEEEeCCcc-chHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEc--Ccccccc-ccCCC
Q 009708 330 VVDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH--ADLRTFA-DNSTV 405 (528)
Q Consensus 330 ~l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~--~D~~~~~-~~~~~ 405 (528)
...+++|++||-.|||+ |..++++|+.++ ..+|+++|.++++++.++ .+|.+..+.... .|..+.. ....+
T Consensus 186 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~----~lGa~~vi~~~~~~~~~~~~i~~~t~g 260 (373)
T 1p0f_A 186 TAKVTPGSTCAVFGLGGVGFSAIVGCKAAG-ASRIIGVGTHKDKFPKAI----ELGATECLNPKDYDKPIYEVICEKTNG 260 (373)
T ss_dssp TTCCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCGGGHHHHH----HTTCSEEECGGGCSSCHHHHHHHHTTS
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHHH----HcCCcEEEecccccchHHHHHHHHhCC
Confidence 45678999999999865 556677777653 348999999999988764 467753211100 1121111 11123
Q ss_pred CCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCC-CEEEEE
Q 009708 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPG-GVLVYS 464 (528)
Q Consensus 406 ~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpG-G~Lvys 464 (528)
.+|+||- |+|.. ..+..++++|++| |+++..
T Consensus 261 g~Dvvid---~~g~~-------------------------~~~~~~~~~l~~~~G~iv~~ 292 (373)
T 1p0f_A 261 GVDYAVE---CAGRI-------------------------ETMMNALQSTYCGSGVTVVL 292 (373)
T ss_dssp CBSEEEE---CSCCH-------------------------HHHHHHHHTBCTTTCEEEEC
T ss_pred CCCEEEE---CCCCH-------------------------HHHHHHHHHHhcCCCEEEEE
Confidence 7998874 33311 1377889999999 998854
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.64 E-value=0.02 Score=59.10 Aligned_cols=110 Identities=17% Similarity=0.186 Sum_probs=66.1
Q ss_pred hcCCCCCCeEEEeCCcc-chHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCc-ccc-cccc-CCC
Q 009708 330 VVDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHAD-LRT-FADN-STV 405 (528)
Q Consensus 330 ~l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D-~~~-~~~~-~~~ 405 (528)
...+++|++||-.|||+ |..++++|+.++ ..+|+++|.++++++.++ .+|.+ .+.....| ..+ +... ...
T Consensus 180 ~~~~~~g~~VlV~GaG~vG~~aiqlAk~~G-a~~Vi~~~~~~~~~~~a~----~lGa~-~i~~~~~~~~~~~v~~~t~g~ 253 (398)
T 1kol_A 180 TAGVGPGSTVYVAGAGPVGLAAAASARLLG-AAVVIVGDLNPARLAHAK----AQGFE-IADLSLDTPLHEQIAALLGEP 253 (398)
T ss_dssp HTTCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHH----HTTCE-EEETTSSSCHHHHHHHHHSSS
T ss_pred HcCCCCCCEEEEECCcHHHHHHHHHHHHCC-CCeEEEEcCCHHHHHHHH----HcCCc-EEccCCcchHHHHHHHHhCCC
Confidence 35678999999999876 667778887753 348999999999998775 46763 22211111 111 1111 124
Q ss_pred CCCEEEEcCCCCCCcccc------CCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 406 KCDKVLLDAPCSGLGVLS------KRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 406 ~fD~Vl~D~Pcsg~G~~~------~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
.+|+||- |+|..... .+++ + ...+..++++|++||+++..
T Consensus 254 g~Dvvid---~~G~~~~~~~~~~~~~~~------~----------~~~~~~~~~~l~~~G~iv~~ 299 (398)
T 1kol_A 254 EVDCAVD---AVGFEARGHGHEGAKHEA------P----------ATVLNSLMQVTRVAGKIGIP 299 (398)
T ss_dssp CEEEEEE---CCCTTCBCSSTTGGGSBC------T----------THHHHHHHHHEEEEEEEEEC
T ss_pred CCCEEEE---CCCCcccccccccccccc------h----------HHHHHHHHHHHhcCCEEEEe
Confidence 6998874 33321100 0110 0 11367788999999998854
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.62 E-value=0.024 Score=58.03 Aligned_cols=103 Identities=17% Similarity=0.189 Sum_probs=66.3
Q ss_pred HhcCCCCCCeEEEeCCcc-chHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEE--cCcccccc-ccCC
Q 009708 329 AVVDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTI--HADLRTFA-DNST 404 (528)
Q Consensus 329 ~~l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~--~~D~~~~~-~~~~ 404 (528)
....+++|++||=.|||+ |..++++|+.++ ..+|+++|.++++++.++ .+|.+..+... ..|..+.. ....
T Consensus 187 ~~~~~~~g~~VlV~GaG~vG~~a~q~a~~~G-a~~Vi~~~~~~~~~~~a~----~lGa~~vi~~~~~~~~~~~~i~~~~~ 261 (378)
T 3uko_A 187 NTAKVEPGSNVAIFGLGTVGLAVAEGAKTAG-ASRIIGIDIDSKKYETAK----KFGVNEFVNPKDHDKPIQEVIVDLTD 261 (378)
T ss_dssp TTTCCCTTCCEEEECCSHHHHHHHHHHHHHT-CSCEEEECSCTTHHHHHH----TTTCCEEECGGGCSSCHHHHHHHHTT
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHH----HcCCcEEEccccCchhHHHHHHHhcC
Confidence 345678999999999865 666777777653 348999999999988664 56776421111 11111111 1112
Q ss_pred CCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCC-CEEEEE
Q 009708 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPG-GVLVYS 464 (528)
Q Consensus 405 ~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpG-G~Lvys 464 (528)
+.+|+||- |+|.. ..+..++++|++| |+++..
T Consensus 262 gg~D~vid---~~g~~-------------------------~~~~~~~~~l~~g~G~iv~~ 294 (378)
T 3uko_A 262 GGVDYSFE---CIGNV-------------------------SVMRAALECCHKGWGTSVIV 294 (378)
T ss_dssp SCBSEEEE---CSCCH-------------------------HHHHHHHHTBCTTTCEEEEC
T ss_pred CCCCEEEE---CCCCH-------------------------HHHHHHHHHhhccCCEEEEE
Confidence 47999874 43311 2378889999997 998854
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.52 E-value=0.052 Score=55.39 Aligned_cols=102 Identities=15% Similarity=0.172 Sum_probs=64.6
Q ss_pred hcCCCCCCeEEEeCCcc-chHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEc--Ccccccc-ccCCC
Q 009708 330 VVDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH--ADLRTFA-DNSTV 405 (528)
Q Consensus 330 ~l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~--~D~~~~~-~~~~~ 405 (528)
..++++|++||-.|+|+ |..++++|+.++ ..+|+++|.++.+++.++ .+|.+..+.... .|..+.. ....+
T Consensus 187 ~~~~~~g~~VlV~GaG~vG~~a~qla~~~G-a~~Vi~~~~~~~~~~~~~----~lGa~~vi~~~~~~~~~~~~~~~~~~~ 261 (374)
T 1cdo_A 187 TAKVEPGSTCAVFGLGAVGLAAVMGCHSAG-AKRIIAVDLNPDKFEKAK----VFGATDFVNPNDHSEPISQVLSKMTNG 261 (374)
T ss_dssp TTCCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHH----HTTCCEEECGGGCSSCHHHHHHHHHTS
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHH----HhCCceEEeccccchhHHHHHHHHhCC
Confidence 35678999999999765 556677777642 338999999999988764 467653111100 1111111 11123
Q ss_pred CCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCC-CEEEEE
Q 009708 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPG-GVLVYS 464 (528)
Q Consensus 406 ~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpG-G~Lvys 464 (528)
.+|+||- |+|.+ ..+..++++|++| |++|..
T Consensus 262 g~D~vid---~~g~~-------------------------~~~~~~~~~l~~~~G~iv~~ 293 (374)
T 1cdo_A 262 GVDFSLE---CVGNV-------------------------GVMRNALESCLKGWGVSVLV 293 (374)
T ss_dssp CBSEEEE---CSCCH-------------------------HHHHHHHHTBCTTTCEEEEC
T ss_pred CCCEEEE---CCCCH-------------------------HHHHHHHHHhhcCCcEEEEE
Confidence 7998874 33311 1377889999999 998854
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=95.49 E-value=0.01 Score=60.56 Aligned_cols=128 Identities=13% Similarity=0.080 Sum_probs=74.3
Q ss_pred CeEEEeCCccchHHHHHHHH---------------cCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccc
Q 009708 337 QSIVDCCAAPGGKTLYMASC---------------LSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD 401 (528)
Q Consensus 337 ~~VLDl~aG~G~kt~~la~~---------------~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~ 401 (528)
-+|+|+||++|..|+.+... -.+.-+|+.+|+-..-...+-+++....-...--++.+....+-.
T Consensus 53 ~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSFy~ 132 (359)
T 1m6e_X 53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFYG 132 (359)
T ss_dssp ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSSS
T ss_pred eEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhhhh
Confidence 47999999999998765543 123467999999888887776655431100012344444333211
Q ss_pred --cCCCCCCEEEEcCCCCCCccccCCchhh-------c-c-CCH-----HHHHHHHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 402 --NSTVKCDKVLLDAPCSGLGVLSKRADLR-------W-N-RRL-----EDMEELKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 402 --~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~-------~-~-~~~-----~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
.+..++|.|++... .--+.+.|+.. | . .++ .-..+..+.-..+|+.-.+-|+|||++|..+
T Consensus 133 rlfp~~S~d~v~Ss~a---LHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~ 209 (359)
T 1m6e_X 133 RLFPRNTLHFIHSSYS---LMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTI 209 (359)
T ss_dssp CCSCTTCBSCEEEESC---TTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEE
T ss_pred ccCCCCceEEEEehhh---hhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 12468999986521 11122222110 0 0 001 1123445555667999999999999999776
Q ss_pred CC
Q 009708 466 CS 467 (528)
Q Consensus 466 cs 467 (528)
..
T Consensus 210 ~g 211 (359)
T 1m6e_X 210 LG 211 (359)
T ss_dssp EE
T ss_pred ec
Confidence 53
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=95.48 E-value=0.021 Score=58.25 Aligned_cols=99 Identities=15% Similarity=0.040 Sum_probs=64.6
Q ss_pred hcCCCCCCeEEEeCCcc-chHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEc-Cccccccc--cCCC
Q 009708 330 VVDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH-ADLRTFAD--NSTV 405 (528)
Q Consensus 330 ~l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~-~D~~~~~~--~~~~ 405 (528)
...+++|++||-.|+|+ |..++++|+.+ +.+|+++|.++.+++.++ .+|.+..+. .. .|..+... ....
T Consensus 184 ~~~~~~g~~VlV~G~G~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~----~lGa~~vi~-~~~~~~~~~v~~~~~g~ 256 (363)
T 3uog_A 184 KGHLRAGDRVVVQGTGGVALFGLQIAKAT--GAEVIVTSSSREKLDRAF----ALGADHGIN-RLEEDWVERVYALTGDR 256 (363)
T ss_dssp TTCCCTTCEEEEESSBHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHH----HHTCSEEEE-TTTSCHHHHHHHHHTTC
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc--CCEEEEEecCchhHHHHH----HcCCCEEEc-CCcccHHHHHHHHhCCC
Confidence 45678999999999776 66667777764 358999999999988764 467764222 11 12111111 1124
Q ss_pred CCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 406 ~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
.+|+|+- |+|... +..+++.|++||+++..
T Consensus 257 g~D~vid---~~g~~~--------------------------~~~~~~~l~~~G~iv~~ 286 (363)
T 3uog_A 257 GADHILE---IAGGAG--------------------------LGQSLKAVAPDGRISVI 286 (363)
T ss_dssp CEEEEEE---ETTSSC--------------------------HHHHHHHEEEEEEEEEE
T ss_pred CceEEEE---CCChHH--------------------------HHHHHHHhhcCCEEEEE
Confidence 6998875 333111 67788899999998854
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.05 Score=54.74 Aligned_cols=104 Identities=15% Similarity=0.150 Sum_probs=66.1
Q ss_pred HHhcCCCCCCeEEEeCCccch-HHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc--CC
Q 009708 328 VAVVDPQPGQSIVDCCAAPGG-KTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN--ST 404 (528)
Q Consensus 328 ~~~l~~~~g~~VLDl~aG~G~-kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~--~~ 404 (528)
......++|++||=.|||+.| .++++|+.+ +...++++|.++++++.++ .+|.+..+.....|..+.... ..
T Consensus 153 ~~~~~~~~g~~VlV~GaG~vG~~aiq~ak~~-G~~~vi~~~~~~~k~~~a~----~lGa~~~i~~~~~~~~~~~~~~~~~ 227 (346)
T 4a2c_A 153 FHLAQGCENKNVIIIGAGTIGLLAIQCAVAL-GAKSVTAIDISSEKLALAK----SFGAMQTFNSSEMSAPQMQSVLREL 227 (346)
T ss_dssp HHHTTCCTTSEEEEECCSHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHH----HTTCSEEEETTTSCHHHHHHHHGGG
T ss_pred HHHhccCCCCEEEEECCCCcchHHHHHHHHc-CCcEEEEEechHHHHHHHH----HcCCeEEEeCCCCCHHHHHHhhccc
Confidence 344567899999999987754 556667664 3457899999999987664 578764222222222221111 12
Q ss_pred CCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 405 ~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
..+|.|+- |+|.+ ..++.+++++++||+++..
T Consensus 228 ~g~d~v~d---~~G~~-------------------------~~~~~~~~~l~~~G~~v~~ 259 (346)
T 4a2c_A 228 RFNQLILE---TAGVP-------------------------QTVELAVEIAGPHAQLALV 259 (346)
T ss_dssp CSSEEEEE---CSCSH-------------------------HHHHHHHHHCCTTCEEEEC
T ss_pred CCcccccc---ccccc-------------------------chhhhhhheecCCeEEEEE
Confidence 45777764 33321 1377788999999998854
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=95.39 E-value=0.023 Score=57.31 Aligned_cols=99 Identities=17% Similarity=0.186 Sum_probs=65.9
Q ss_pred CCCCCCeEEEeCCcc-chHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc--CCCCCC
Q 009708 332 DPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN--STVKCD 408 (528)
Q Consensus 332 ~~~~g~~VLDl~aG~-G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~--~~~~fD 408 (528)
.+++|++||-.|+|+ |..++++|+.++ ..+|+++|.++++++.++ .+|.+..+. ...|..+.... ....+|
T Consensus 168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g-~~~Vi~~~~~~~~~~~~~----~lGa~~~i~-~~~~~~~~v~~~t~g~g~d 241 (345)
T 3jv7_A 168 LLGPGSTAVVIGVGGLGHVGIQILRAVS-AARVIAVDLDDDRLALAR----EVGADAAVK-SGAGAADAIRELTGGQGAT 241 (345)
T ss_dssp GCCTTCEEEEECCSHHHHHHHHHHHHHC-CCEEEEEESCHHHHHHHH----HTTCSEEEE-CSTTHHHHHHHHHGGGCEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHH----HcCCCEEEc-CCCcHHHHHHHHhCCCCCe
Confidence 578899999999876 667778887653 469999999999998764 468764221 11122111111 123699
Q ss_pred EEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 409 KVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 409 ~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
+||- |+|.. ..+..+++.|++||+++..
T Consensus 242 ~v~d---~~G~~-------------------------~~~~~~~~~l~~~G~iv~~ 269 (345)
T 3jv7_A 242 AVFD---FVGAQ-------------------------STIDTAQQVVAVDGHISVV 269 (345)
T ss_dssp EEEE---SSCCH-------------------------HHHHHHHHHEEEEEEEEEC
T ss_pred EEEE---CCCCH-------------------------HHHHHHHHHHhcCCEEEEE
Confidence 8874 43311 1377889999999999854
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=95.32 E-value=0.06 Score=54.93 Aligned_cols=102 Identities=14% Similarity=0.100 Sum_probs=64.3
Q ss_pred hcCCCCCCeEEEeCCcc-chHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEc--Ccccccc-ccCCC
Q 009708 330 VVDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH--ADLRTFA-DNSTV 405 (528)
Q Consensus 330 ~l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~--~D~~~~~-~~~~~ 405 (528)
..++++|++||-.|+|+ |..++++|+.++ ..+|+++|.++++++.++ .+|.+..+.... .|..+.. ....+
T Consensus 186 ~~~~~~g~~VlV~GaG~vG~~a~qla~~~G-a~~Vi~~~~~~~~~~~~~----~lGa~~vi~~~~~~~~~~~~~~~~~~~ 260 (374)
T 2jhf_A 186 VAKVTQGSTCAVFGLGGVGLSVIMGCKAAG-AARIIGVDINKDKFAKAK----EVGATECVNPQDYKKPIQEVLTEMSNG 260 (374)
T ss_dssp TTCCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHH----HTTCSEEECGGGCSSCHHHHHHHHTTS
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHH----HhCCceEecccccchhHHHHHHHHhCC
Confidence 45678999999999765 556677777642 348999999999988764 467653111100 1111111 11123
Q ss_pred CCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCC-CEEEEE
Q 009708 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPG-GVLVYS 464 (528)
Q Consensus 406 ~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpG-G~Lvys 464 (528)
.+|+||- |+|.. ..+..++++|++| |+++..
T Consensus 261 g~D~vid---~~g~~-------------------------~~~~~~~~~l~~~~G~iv~~ 292 (374)
T 2jhf_A 261 GVDFSFE---VIGRL-------------------------DTMVTALSCCQEAYGVSVIV 292 (374)
T ss_dssp CBSEEEE---CSCCH-------------------------HHHHHHHHHBCTTTCEEEEC
T ss_pred CCcEEEE---CCCCH-------------------------HHHHHHHHHhhcCCcEEEEe
Confidence 6998874 33211 1367788999999 998854
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=95.30 E-value=0.02 Score=58.25 Aligned_cols=96 Identities=13% Similarity=0.167 Sum_probs=61.3
Q ss_pred cCCCCCCeEEEeCCcc-chHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccc-cccccCCCCCC
Q 009708 331 VDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR-TFADNSTVKCD 408 (528)
Q Consensus 331 l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~-~~~~~~~~~fD 408 (528)
.++++|++||-.|+|+ |..++++|+.++ .+|+++|.++.+++.+++ +|.+. ++..+-. ++.......+|
T Consensus 175 ~~~~~g~~VlV~GaG~vG~~~~qlak~~G--a~Vi~~~~~~~~~~~~~~----lGa~~---v~~~~~~~~~~~~~~~~~D 245 (360)
T 1piw_A 175 NGCGPGKKVGIVGLGGIGSMGTLISKAMG--AETYVISRSSRKREDAMK----MGADH---YIATLEEGDWGEKYFDTFD 245 (360)
T ss_dssp TTCSTTCEEEEECCSHHHHHHHHHHHHHT--CEEEEEESSSTTHHHHHH----HTCSE---EEEGGGTSCHHHHSCSCEE
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHHH----cCCCE---EEcCcCchHHHHHhhcCCC
Confidence 5688999999999864 556677777643 479999999999887654 57653 2221111 11111114699
Q ss_pred EEEEcCCCCCC--ccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEE
Q 009708 409 KVLLDAPCSGL--GVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463 (528)
Q Consensus 409 ~Vl~D~Pcsg~--G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvy 463 (528)
+||- |+|. .. .+..++++|++||+++.
T Consensus 246 ~vid---~~g~~~~~-------------------------~~~~~~~~l~~~G~iv~ 274 (360)
T 1piw_A 246 LIVV---CASSLTDI-------------------------DFNIMPKAMKVGGRIVS 274 (360)
T ss_dssp EEEE---CCSCSTTC-------------------------CTTTGGGGEEEEEEEEE
T ss_pred EEEE---CCCCCcHH-------------------------HHHHHHHHhcCCCEEEE
Confidence 8875 3332 10 14557788899998874
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=95.29 E-value=0.061 Score=54.80 Aligned_cols=102 Identities=17% Similarity=0.188 Sum_probs=64.5
Q ss_pred hcCCCCCCeEEEeCCcc-chHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEc--Ccccccc-ccCCC
Q 009708 330 VVDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH--ADLRTFA-DNSTV 405 (528)
Q Consensus 330 ~l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~--~D~~~~~-~~~~~ 405 (528)
..++++|++||-.|+|+ |..++++|+.++ ..+|+++|.++++++.++ .+|.+..+.... .|..+.. ....+
T Consensus 185 ~~~~~~g~~VlV~GaG~vG~~avqla~~~G-a~~Vi~~~~~~~~~~~~~----~lGa~~vi~~~~~~~~~~~~v~~~~~~ 259 (373)
T 2fzw_A 185 TAKLEPGSVCAVFGLGGVGLAVIMGCKVAG-ASRIIGVDINKDKFARAK----EFGATECINPQDFSKPIQEVLIEMTDG 259 (373)
T ss_dssp TTCCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCGGGHHHHH----HHTCSEEECGGGCSSCHHHHHHHHTTS
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHH----HcCCceEeccccccccHHHHHHHHhCC
Confidence 45678999999999765 556677777653 348999999999988765 457653111100 1111111 11123
Q ss_pred CCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCC-CEEEEE
Q 009708 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPG-GVLVYS 464 (528)
Q Consensus 406 ~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpG-G~Lvys 464 (528)
.+|+||- |+|. ...+..++++|++| |+++..
T Consensus 260 g~D~vid---~~g~-------------------------~~~~~~~~~~l~~~~G~iv~~ 291 (373)
T 2fzw_A 260 GVDYSFE---CIGN-------------------------VKVMRAALEACHKGWGVSVVV 291 (373)
T ss_dssp CBSEEEE---CSCC-------------------------HHHHHHHHHTBCTTTCEEEEC
T ss_pred CCCEEEE---CCCc-------------------------HHHHHHHHHhhccCCcEEEEE
Confidence 6998874 3331 11377889999999 998854
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=95.27 E-value=0.058 Score=54.29 Aligned_cols=102 Identities=21% Similarity=0.177 Sum_probs=64.9
Q ss_pred hcCCCCCCeEEEeCCccch-HHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc--CCCC
Q 009708 330 VVDPQPGQSIVDCCAAPGG-KTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN--STVK 406 (528)
Q Consensus 330 ~l~~~~g~~VLDl~aG~G~-kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~--~~~~ 406 (528)
...+++|++||=.|+|+++ .+.++++.+. ..+|+++|.++++++.+ +.+|.+..+.....|..+.... ....
T Consensus 158 ~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~-g~~Vi~~~~~~~r~~~~----~~~Ga~~~i~~~~~~~~~~v~~~t~g~g 232 (348)
T 4eez_A 158 VSGVKPGDWQVIFGAGGLGNLAIQYAKNVF-GAKVIAVDINQDKLNLA----KKIGADVTINSGDVNPVDEIKKITGGLG 232 (348)
T ss_dssp HHTCCTTCEEEEECCSHHHHHHHHHHHHTS-CCEEEEEESCHHHHHHH----HHTTCSEEEEC-CCCHHHHHHHHTTSSC
T ss_pred ccCCCCCCEEEEEcCCCccHHHHHHHHHhC-CCEEEEEECcHHHhhhh----hhcCCeEEEeCCCCCHHHHhhhhcCCCC
Confidence 3467899999999998755 5555565543 57999999999988665 4567764333323333221111 1235
Q ss_pred CCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 407 CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 407 fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
+|.++.+..- + ..+..+...|+++|+++..
T Consensus 233 ~d~~~~~~~~---~-------------------------~~~~~~~~~l~~~G~~v~~ 262 (348)
T 4eez_A 233 VQSAIVCAVA---R-------------------------IAFEQAVASLKPMGKMVAV 262 (348)
T ss_dssp EEEEEECCSC---H-------------------------HHHHHHHHTEEEEEEEEEC
T ss_pred ceEEEEeccC---c-------------------------chhheeheeecCCceEEEE
Confidence 7777764221 1 1367788999999998754
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=95.26 E-value=0.02 Score=57.77 Aligned_cols=97 Identities=9% Similarity=0.018 Sum_probs=62.5
Q ss_pred CCCCCCeEEEeCCcc-chHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcc-cccccc--CCCCC
Q 009708 332 DPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL-RTFADN--STVKC 407 (528)
Q Consensus 332 ~~~~g~~VLDl~aG~-G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~-~~~~~~--~~~~f 407 (528)
++ +|++||-.|+|+ |..++++|+.+.++.+|+++|.++++++.+++ +|.+. ++..+- .+.... ....+
T Consensus 168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~----lGa~~---vi~~~~~~~~~~~~~~g~g~ 239 (344)
T 2h6e_A 168 KF-AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALE----LGADY---VSEMKDAESLINKLTDGLGA 239 (344)
T ss_dssp TC-SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHH----HTCSE---EECHHHHHHHHHHHHTTCCE
T ss_pred CC-CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHH----hCCCE---EeccccchHHHHHhhcCCCc
Confidence 67 899999999865 56677777765113589999999999887654 57653 222111 111111 12369
Q ss_pred CEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 408 DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 408 D~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
|+||- |+|.. ..+..++++|++||+++..
T Consensus 240 D~vid---~~g~~-------------------------~~~~~~~~~l~~~G~iv~~ 268 (344)
T 2h6e_A 240 SIAID---LVGTE-------------------------ETTYNLGKLLAQEGAIILV 268 (344)
T ss_dssp EEEEE---SSCCH-------------------------HHHHHHHHHEEEEEEEEEC
T ss_pred cEEEE---CCCCh-------------------------HHHHHHHHHhhcCCEEEEe
Confidence 98875 33311 1367788899999998854
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=95.26 E-value=0.033 Score=56.81 Aligned_cols=96 Identities=15% Similarity=0.029 Sum_probs=61.8
Q ss_pred CCCeEEEeC-Ccc-chHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccc-cccCCCCCCEEE
Q 009708 335 PGQSIVDCC-AAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF-ADNSTVKCDKVL 411 (528)
Q Consensus 335 ~g~~VLDl~-aG~-G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~-~~~~~~~fD~Vl 411 (528)
+|++||=.| +|+ |..++++|+.+. +.+|+++|.++++++.++ .+|.+..+. ...|.... .......+|+|+
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~-g~~Vi~~~~~~~~~~~~~----~lGad~vi~-~~~~~~~~v~~~~~~g~Dvvi 244 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRT-DLTVIATASRPETQEWVK----SLGAHHVID-HSKPLAAEVAALGLGAPAFVF 244 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHC-CSEEEEECSSHHHHHHHH----HTTCSEEEC-TTSCHHHHHHTTCSCCEEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHHH----HcCCCEEEe-CCCCHHHHHHHhcCCCceEEE
Confidence 788999887 443 667777777543 469999999999988765 467663211 11122111 111235799887
Q ss_pred EcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 412 LDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 412 ~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
- |+|.. ..+..++++|++||+++..
T Consensus 245 d---~~g~~-------------------------~~~~~~~~~l~~~G~iv~~ 269 (363)
T 4dvj_A 245 S---TTHTD-------------------------KHAAEIADLIAPQGRFCLI 269 (363)
T ss_dssp E---CSCHH-------------------------HHHHHHHHHSCTTCEEEEC
T ss_pred E---CCCch-------------------------hhHHHHHHHhcCCCEEEEE
Confidence 4 44311 2377889999999999864
|
| >3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A* | Back alignment and structure |
|---|
Probab=95.15 E-value=0.058 Score=62.08 Aligned_cols=79 Identities=13% Similarity=0.231 Sum_probs=57.4
Q ss_pred eEEEeCCccchHHHHHHHHcCCC-cEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccc------------c-c-
Q 009708 338 SIVDCCAAPGGKTLYMASCLSGQ-GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA------------D-N- 402 (528)
Q Consensus 338 ~VLDl~aG~G~kt~~la~~~~~~-~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~------------~-~- 402 (528)
+++||+||.||.++-+.+. +- -.+.|+|+++.+++..+.|. ++ ..++++|+..+. . .
T Consensus 542 ~~iDLFaG~GGlslGl~~A--G~~~vv~avEid~~A~~ty~~N~-----p~-~~~~~~DI~~l~~~~~~~di~~~~~~~l 613 (1002)
T 3swr_A 542 RTLDVFSGCGGLSEGFHQA--GISDTLWAIEMWDPAAQAFRLNN-----PG-STVFTEDCNILLKLVMAGETTNSRGQRL 613 (1002)
T ss_dssp EEEEESCTTSHHHHHHHHH--TSEEEEEEECSSHHHHHHHHHHC-----TT-SEEECSCHHHHHHHHHHTCSBCTTCCBC
T ss_pred eEEEeccCccHHHHHHHHC--CCCceEEEEECCHHHHHHHHHhC-----CC-CccccccHHHHhhhccchhhhhhhhhhc
Confidence 7999999999999888664 22 25789999999999888774 22 346677764431 0 0
Q ss_pred -CCCCCCEEEEcCCCCCCccccC
Q 009708 403 -STVKCDKVLLDAPCSGLGVLSK 424 (528)
Q Consensus 403 -~~~~fD~Vl~D~Pcsg~G~~~~ 424 (528)
..+.+|+|+.-|||.+....++
T Consensus 614 p~~~~vDll~GGpPCQ~FS~ag~ 636 (1002)
T 3swr_A 614 PQKGDVEMLCGGPPCQGFSGMNR 636 (1002)
T ss_dssp CCTTTCSEEEECCCCTTCCSSSC
T ss_pred ccCCCeeEEEEcCCCcchhhhCC
Confidence 1246899999999988766554
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=95.10 E-value=0.02 Score=57.76 Aligned_cols=101 Identities=15% Similarity=0.070 Sum_probs=63.8
Q ss_pred HhcCCCCCCeEEEeCCc--cchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccc-c-CC
Q 009708 329 AVVDPQPGQSIVDCCAA--PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-N-ST 404 (528)
Q Consensus 329 ~~l~~~~g~~VLDl~aG--~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~-~-~~ 404 (528)
....+++|++||-.||| .|..++++++.+ +.+|+++|.++++++.+++ +|.+..+.....|...... . ..
T Consensus 138 ~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~----lga~~~~~~~~~~~~~~~~~~~~~ 211 (340)
T 3gms_A 138 ETLNLQRNDVLLVNACGSAIGHLFAQLSQIL--NFRLIAVTRNNKHTEELLR----LGAAYVIDTSTAPLYETVMELTNG 211 (340)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHHHH--TCEEEEEESSSTTHHHHHH----HTCSEEEETTTSCHHHHHHHHTTT
T ss_pred HhcccCCCCEEEEeCCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHh----CCCcEEEeCCcccHHHHHHHHhCC
Confidence 44678899999999986 567777887765 3589999999999887764 5665322111112211111 1 12
Q ss_pred CCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 405 ~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
..+|+|+- |.|.. .+..+.+.|++||+++..
T Consensus 212 ~g~Dvvid---~~g~~--------------------------~~~~~~~~l~~~G~iv~~ 242 (340)
T 3gms_A 212 IGADAAID---SIGGP--------------------------DGNELAFSLRPNGHFLTI 242 (340)
T ss_dssp SCEEEEEE---SSCHH--------------------------HHHHHHHTEEEEEEEEEC
T ss_pred CCCcEEEE---CCCCh--------------------------hHHHHHHHhcCCCEEEEE
Confidence 46998875 43311 123345789999998854
|
| >4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A* | Back alignment and structure |
|---|
Probab=95.09 E-value=0.052 Score=61.25 Aligned_cols=44 Identities=18% Similarity=0.218 Sum_probs=33.9
Q ss_pred CeEEEeCCccchHHHHHHHHcC--C--CcEEEEEcCChHHHHHHHHHH
Q 009708 337 QSIVDCCAAPGGKTLYMASCLS--G--QGLVYAIDINKGRLRILNETA 380 (528)
Q Consensus 337 ~~VLDl~aG~G~kt~~la~~~~--~--~~~v~avD~s~~~l~~~~~n~ 380 (528)
-+||||+||.||.++-+.+... + --.+.|+|+++.+++..+.|.
T Consensus 213 ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nh 260 (784)
T 4ft4_B 213 ATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNH 260 (784)
T ss_dssp EEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHC
T ss_pred CeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHC
Confidence 4799999999999987765310 0 025789999999999988874
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=95.07 E-value=0.075 Score=53.94 Aligned_cols=102 Identities=23% Similarity=0.307 Sum_probs=65.4
Q ss_pred HhcCCCCCCeEEEeCCcc-chHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEc-----Ccccccc-c
Q 009708 329 AVVDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH-----ADLRTFA-D 401 (528)
Q Consensus 329 ~~l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~-----~D~~~~~-~ 401 (528)
....+++|++||=.|+|+ |..++++|+.++ ...|+++|.++++++.+++. + +..+.... .|..+.. .
T Consensus 173 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~~l----~-~~~~~~~~~~~~~~~~~~~v~~ 246 (363)
T 3m6i_A 173 QRAGVRLGDPVLICGAGPIGLITMLCAKAAG-ACPLVITDIDEGRLKFAKEI----C-PEVVTHKVERLSAEESAKKIVE 246 (363)
T ss_dssp HHHTCCTTCCEEEECCSHHHHHHHHHHHHTT-CCSEEEEESCHHHHHHHHHH----C-TTCEEEECCSCCHHHHHHHHHH
T ss_pred HHcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHHh----c-hhcccccccccchHHHHHHHHH
Confidence 345788999999999866 666777777643 33499999999999988764 2 22232221 1111111 1
Q ss_pred c-CCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 402 N-STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 402 ~-~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
. ....+|+||- |+|.. ..+..++++|++||+++..
T Consensus 247 ~t~g~g~Dvvid---~~g~~-------------------------~~~~~~~~~l~~~G~iv~~ 282 (363)
T 3m6i_A 247 SFGGIEPAVALE---CTGVE-------------------------SSIAAAIWAVKFGGKVFVI 282 (363)
T ss_dssp HTSSCCCSEEEE---CSCCH-------------------------HHHHHHHHHSCTTCEEEEC
T ss_pred HhCCCCCCEEEE---CCCCh-------------------------HHHHHHHHHhcCCCEEEEE
Confidence 1 1357998874 33311 1377889999999999864
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=95.03 E-value=0.08 Score=58.56 Aligned_cols=112 Identities=17% Similarity=0.271 Sum_probs=73.0
Q ss_pred CeEEEeCCccchHHHHHHHHcC-----------CCcEEEEEcC---ChHHHHHHH-----------HHHHHcCC------
Q 009708 337 QSIVDCCAAPGGKTLYMASCLS-----------GQGLVYAIDI---NKGRLRILN-----------ETAKLHQV------ 385 (528)
Q Consensus 337 ~~VLDl~aG~G~kt~~la~~~~-----------~~~~v~avD~---s~~~l~~~~-----------~n~~~~g~------ 385 (528)
-+|+|+|-|+|...+...+... ..-+++++|. +++-+..+- +..+....
T Consensus 68 ~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (676)
T 3ps9_A 68 FVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGCH 147 (676)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSEEE
T ss_pred eEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCCce
Confidence 4899999999998876665431 1246899999 555554221 22222211
Q ss_pred -------CccEEEEcCccccccccC----CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhcc
Q 009708 386 -------NSVIRTIHADLRTFADNS----TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLL 454 (528)
Q Consensus 386 -------~~~i~~~~~D~~~~~~~~----~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~ 454 (528)
.-.+++..+|+.+..... ...||+|++|+-. -.++|+ .|. .+++....++
T Consensus 148 ~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~-----p~~np~-~w~-------------~~~~~~l~~~ 208 (676)
T 3ps9_A 148 RLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFA-----PAKNPD-MWT-------------QNLFNAMARL 208 (676)
T ss_dssp EEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSC-----GGGCGG-GSC-------------HHHHHHHHHH
T ss_pred EEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCC-----CcCChh-hhh-------------HHHHHHHHHH
Confidence 012556778887755433 3679999999855 456777 343 3467888899
Q ss_pred CcCCCEEEEEcCC
Q 009708 455 VKPGGVLVYSTCS 467 (528)
Q Consensus 455 LkpGG~LvysTcs 467 (528)
++|||++...+|.
T Consensus 209 ~~~g~~~~t~~~~ 221 (676)
T 3ps9_A 209 ARPGGTLATFTSA 221 (676)
T ss_dssp EEEEEEEEESCCC
T ss_pred hCCCCEEEeccCc
Confidence 9999998755554
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.01 E-value=0.034 Score=57.00 Aligned_cols=103 Identities=20% Similarity=0.198 Sum_probs=63.6
Q ss_pred HhcC-CCCCCeEEEeCCcc-chHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEE---cCcccc-cccc
Q 009708 329 AVVD-PQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTI---HADLRT-FADN 402 (528)
Q Consensus 329 ~~l~-~~~g~~VLDl~aG~-G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~---~~D~~~-~~~~ 402 (528)
..++ +++|++||-.|+|+ |..++++|+.++ ..+|+++|.++++++.++ .+|.+..+... ..|..+ +...
T Consensus 188 ~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~~~----~lGa~~vi~~~~~~~~~~~~~v~~~ 262 (380)
T 1vj0_A 188 DEYPESFAGKTVVIQGAGPLGLFGVVIARSLG-AENVIVIAGSPNRLKLAE----EIGADLTLNRRETSVEERRKAIMDI 262 (380)
T ss_dssp HTCSSCCBTCEEEEECCSHHHHHHHHHHHHTT-BSEEEEEESCHHHHHHHH----HTTCSEEEETTTSCHHHHHHHHHHH
T ss_pred HhcCCCCCCCEEEEECcCHHHHHHHHHHHHcC-CceEEEEcCCHHHHHHHH----HcCCcEEEeccccCcchHHHHHHHH
Confidence 3456 78999999999664 555667776642 249999999999988765 46765322111 111111 1111
Q ss_pred C-CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 403 S-TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 403 ~-~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
. ...+|+||- |+|.. ..+..++++|++||+++..
T Consensus 263 ~~g~g~Dvvid---~~g~~-------------------------~~~~~~~~~l~~~G~iv~~ 297 (380)
T 1vj0_A 263 THGRGADFILE---ATGDS-------------------------RALLEGSELLRRGGFYSVA 297 (380)
T ss_dssp TTTSCEEEEEE---CSSCT-------------------------THHHHHHHHEEEEEEEEEC
T ss_pred hCCCCCcEEEE---CCCCH-------------------------HHHHHHHHHHhcCCEEEEE
Confidence 1 236998874 33311 1267788899999998853
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=94.94 E-value=0.018 Score=57.88 Aligned_cols=63 Identities=8% Similarity=0.022 Sum_probs=50.4
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccc
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~ 400 (528)
..+|+.|||.+||+|..+..+..+ +-+.+++|+++..++.+++++++.+.+ ...++.|+.++.
T Consensus 250 ~~~~~~VlDpF~GsGtt~~aa~~~---gr~~ig~e~~~~~~~~~~~r~~~~~~~--~~~~~~~~~~i~ 312 (323)
T 1boo_A 250 TEPDDLVVDIFGGSNTTGLVAERE---SRKWISFEMKPEYVAASAFRFLDNNIS--EEKITDIYNRIL 312 (323)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHGGGSCSCSC--HHHHHHHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHhcccc--hHHHHHHHHHHH
Confidence 467999999999999977666553 468999999999999999999887765 345666776654
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=94.87 E-value=0.027 Score=56.63 Aligned_cols=49 Identities=12% Similarity=0.050 Sum_probs=39.2
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCCh---HHHHHHHHHHHHcC
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINK---GRLRILNETAKLHQ 384 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~---~~l~~~~~n~~~~g 384 (528)
..+|+.|||.+||+|..+..+..+ +-+.+++|+++ ..++.+++++++.|
T Consensus 240 ~~~~~~vlDpF~GsGtt~~aa~~~---~r~~ig~e~~~~~~~~~~~~~~Rl~~~~ 291 (319)
T 1eg2_A 240 SHPGSTVLDFFAGSGVTARVAIQE---GRNSICTDAAPVFKEYYQKQLTFLQDDG 291 (319)
T ss_dssp SCTTCEEEETTCTTCHHHHHHHHH---TCEEEEEESSTHHHHHHHHHHHHC----
T ss_pred CCCCCEEEecCCCCCHHHHHHHHc---CCcEEEEECCccHHHHHHHHHHHHHHcc
Confidence 367999999999999988777665 46899999999 99999999987765
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=94.76 E-value=0.03 Score=56.28 Aligned_cols=71 Identities=11% Similarity=0.011 Sum_probs=48.4
Q ss_pred cEEEEcCccccccccC-CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcC
Q 009708 388 VIRTIHADLRTFADNS-TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466 (528)
Q Consensus 388 ~i~~~~~D~~~~~~~~-~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTc 466 (528)
...++++|+....... .++||+|++|||+..... . .|. .....+........|..+.++|||||.+++...
T Consensus 14 ~~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~-~-----~y~--~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~ 85 (323)
T 1boo_A 14 NGSMYIGDSLELLESFPEESISLVMTSPPFALQRK-K-----EYG--NLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFG 85 (323)
T ss_dssp SEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCS-C-----SSC--SCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcc-c-----ccC--CcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEEC
Confidence 4678999998754432 468999999999943211 0 111 123344555567789999999999999987644
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=94.74 E-value=0.049 Score=54.85 Aligned_cols=100 Identities=16% Similarity=0.211 Sum_probs=62.0
Q ss_pred cCCCCCCeEEEeCCcc-chHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCE
Q 009708 331 VDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDK 409 (528)
Q Consensus 331 l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~ 409 (528)
..+++|++||-.|+|+ |..+++++..+ +.+|+++|.++.+++.++ .+|.+..+.....|...........+|+
T Consensus 160 ~~~~~g~~VlV~GaG~vG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~----~lGa~~~~d~~~~~~~~~~~~~~~~~d~ 233 (339)
T 1rjw_A 160 TGAKPGEWVAIYGIGGLGHVAVQYAKAM--GLNVVAVDIGDEKLELAK----ELGADLVVNPLKEDAAKFMKEKVGGVHA 233 (339)
T ss_dssp HTCCTTCEEEEECCSTTHHHHHHHHHHT--TCEEEEECSCHHHHHHHH----HTTCSEEECTTTSCHHHHHHHHHSSEEE
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHH----HCCCCEEecCCCccHHHHHHHHhCCCCE
Confidence 4678999999999864 55666777664 359999999999988764 4676531111111111110000136898
Q ss_pred EEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 410 VLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 410 Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
|+- |+|.. ..+..++++|++||+++..
T Consensus 234 vid---~~g~~-------------------------~~~~~~~~~l~~~G~~v~~ 260 (339)
T 1rjw_A 234 AVV---TAVSK-------------------------PAFQSAYNSIRRGGACVLV 260 (339)
T ss_dssp EEE---SSCCH-------------------------HHHHHHHHHEEEEEEEEEC
T ss_pred EEE---CCCCH-------------------------HHHHHHHHHhhcCCEEEEe
Confidence 875 33311 1367788889999998853
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=94.69 E-value=0.051 Score=54.33 Aligned_cols=99 Identities=18% Similarity=0.120 Sum_probs=62.7
Q ss_pred cCCCCCCeEEEeCC--ccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccc-cc-CCCC
Q 009708 331 VDPQPGQSIVDCCA--APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA-DN-STVK 406 (528)
Q Consensus 331 l~~~~g~~VLDl~a--G~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~-~~-~~~~ 406 (528)
.++++|++||-.|+ |.|..++++++.+ +.+|+++|.++++++.+++ +|.+..+.....|..... .. ....
T Consensus 136 ~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~----~Ga~~~~~~~~~~~~~~~~~~~~~~g 209 (325)
T 3jyn_A 136 YQVKPGEIILFHAAAGGVGSLACQWAKAL--GAKLIGTVSSPEKAAHAKA----LGAWETIDYSHEDVAKRVLELTDGKK 209 (325)
T ss_dssp SCCCTTCEEEESSTTSHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHH----HTCSEEEETTTSCHHHHHHHHTTTCC
T ss_pred cCCCCCCEEEEEcCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCCCEEEeCCCccHHHHHHHHhCCCC
Confidence 46789999998883 3466666777764 3589999999999887753 565532211111211111 11 1246
Q ss_pred CCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 407 CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 407 fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
+|+|+- |.|.. .+..+++.|++||+++..
T Consensus 210 ~Dvvid---~~g~~--------------------------~~~~~~~~l~~~G~iv~~ 238 (325)
T 3jyn_A 210 CPVVYD---GVGQD--------------------------TWLTSLDSVAPRGLVVSF 238 (325)
T ss_dssp EEEEEE---SSCGG--------------------------GHHHHHTTEEEEEEEEEC
T ss_pred ceEEEE---CCChH--------------------------HHHHHHHHhcCCCEEEEE
Confidence 998875 43321 267789999999998854
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=94.65 E-value=0.043 Score=50.43 Aligned_cols=100 Identities=18% Similarity=0.223 Sum_probs=59.2
Q ss_pred hcCCCCCCeEEEeCC--ccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccc-ccccC-CC
Q 009708 330 VVDPQPGQSIVDCCA--APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT-FADNS-TV 405 (528)
Q Consensus 330 ~l~~~~g~~VLDl~a--G~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~-~~~~~-~~ 405 (528)
..++++|++||..|+ |.|.....++... +.+|+++|.++++++.++ ..|....+.....|... +.... ..
T Consensus 33 ~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~--G~~V~~~~~~~~~~~~~~----~~g~~~~~d~~~~~~~~~~~~~~~~~ 106 (198)
T 1pqw_A 33 VGRLSPGERVLIHSATGGVGMAAVSIAKMI--GARIYTTAGSDAKREMLS----RLGVEYVGDSRSVDFADEILELTDGY 106 (198)
T ss_dssp TSCCCTTCEEEETTTTSHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHH----TTCCSEEEETTCSTHHHHHHHHTTTC
T ss_pred HhCCCCCCEEEEeeCCChHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHH----HcCCCEEeeCCcHHHHHHHHHHhCCC
Confidence 356788999999985 3344455555543 358999999998876654 35654211111111111 11111 23
Q ss_pred CCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 406 ~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
.+|.|+.. .| . ..+..+.+.|++||+++..
T Consensus 107 ~~D~vi~~---~g--~------------------------~~~~~~~~~l~~~G~~v~~ 136 (198)
T 1pqw_A 107 GVDVVLNS---LA--G------------------------EAIQRGVQILAPGGRFIEL 136 (198)
T ss_dssp CEEEEEEC---CC--T------------------------HHHHHHHHTEEEEEEEEEC
T ss_pred CCeEEEEC---Cc--h------------------------HHHHHHHHHhccCCEEEEE
Confidence 68988853 22 1 0267788999999998854
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=94.52 E-value=0.017 Score=56.21 Aligned_cols=69 Identities=13% Similarity=0.222 Sum_probs=45.0
Q ss_pred EEEcCccccccccC-CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcC
Q 009708 390 RTIHADLRTFADNS-TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466 (528)
Q Consensus 390 ~~~~~D~~~~~~~~-~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTc 466 (528)
+++++|+....... .++||+|++|||+.. +. .. |. ......+........|..+.++|+|||.+++..|
T Consensus 6 ~l~~gD~~~~l~~l~~~~vdlI~~DPPY~~-~~--~~----~d-~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~~~ 75 (260)
T 1g60_A 6 KIHQMNCFDFLDQVENKSVQLAVIDPPYNL-SK--AD----WD-SFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNT 75 (260)
T ss_dssp SEEECCHHHHHHHSCTTCEEEEEECCCCSS-CS--SG----GG-CCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred eEEechHHHHHHhccccccCEEEECCCCCC-Cc--cc----cc-ccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEEcC
Confidence 46889987755433 468999999999942 21 00 10 0002333444556778889999999999886654
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=94.43 E-value=0.046 Score=54.84 Aligned_cols=102 Identities=21% Similarity=0.132 Sum_probs=64.5
Q ss_pred HhcCCCCCCeEEEeCC--ccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccc-ccCCC
Q 009708 329 AVVDPQPGQSIVDCCA--APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA-DNSTV 405 (528)
Q Consensus 329 ~~l~~~~g~~VLDl~a--G~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~-~~~~~ 405 (528)
....+++|++||-.|| |.|..+++++... +.+|+++|.++++++.+. +.+|.+..+.....|..... ....+
T Consensus 143 ~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~ 217 (336)
T 4b7c_A 143 DVGQPKNGETVVISGAAGAVGSVAGQIARLK--GCRVVGIAGGAEKCRFLV---EELGFDGAIDYKNEDLAAGLKRECPK 217 (336)
T ss_dssp HTTCCCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHH---HTTCCSEEEETTTSCHHHHHHHHCTT
T ss_pred HhcCCCCCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHH---HHcCCCEEEECCCHHHHHHHHHhcCC
Confidence 4567889999999998 4466666777653 359999999999887662 34566532211111221111 11134
Q ss_pred CCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 406 ~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
.+|+|+- |.|. ..+..+++.|++||+++..
T Consensus 218 ~~d~vi~---~~g~--------------------------~~~~~~~~~l~~~G~iv~~ 247 (336)
T 4b7c_A 218 GIDVFFD---NVGG--------------------------EILDTVLTRIAFKARIVLC 247 (336)
T ss_dssp CEEEEEE---SSCH--------------------------HHHHHHHTTEEEEEEEEEC
T ss_pred CceEEEE---CCCc--------------------------chHHHHHHHHhhCCEEEEE
Confidence 6998875 4331 1377889999999998853
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.25 E-value=0.09 Score=54.32 Aligned_cols=51 Identities=16% Similarity=0.189 Sum_probs=38.5
Q ss_pred CCCCCCeEEEeCCcc-chHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCc
Q 009708 332 DPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS 387 (528)
Q Consensus 332 ~~~~g~~VLDl~aG~-G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~ 387 (528)
.+++|++||=.|+|+ |..++++|+.+ +..+|+++|.++.+++.++ .+|.+.
T Consensus 210 ~~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~~~----~lGa~~ 261 (404)
T 3ip1_A 210 GIRPGDNVVILGGGPIGLAAVAILKHA-GASKVILSEPSEVRRNLAK----ELGADH 261 (404)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCHHHHHHHH----HHTCSE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHH----HcCCCE
Confidence 578999999999865 55666777764 3348999999999998775 457653
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=94.21 E-value=0.063 Score=53.83 Aligned_cols=99 Identities=14% Similarity=0.073 Sum_probs=61.8
Q ss_pred cCCCCCCeEEEeCC--ccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccc-c-CCCC
Q 009708 331 VDPQPGQSIVDCCA--APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-N-STVK 406 (528)
Q Consensus 331 l~~~~g~~VLDl~a--G~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~-~-~~~~ 406 (528)
..+++|++||-.|+ |.|..++++++.. +.+|+++|.++++++.++ .+|.+..+.....|...... . ....
T Consensus 144 ~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~----~~ga~~~~~~~~~~~~~~~~~~~~~~g 217 (334)
T 3qwb_A 144 YHVKKGDYVLLFAAAGGVGLILNQLLKMK--GAHTIAVASTDEKLKIAK----EYGAEYLINASKEDILRQVLKFTNGKG 217 (334)
T ss_dssp SCCCTTCEEEESSTTBHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHH----HTTCSEEEETTTSCHHHHHHHHTTTSC
T ss_pred ccCCCCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHH----HcCCcEEEeCCCchHHHHHHHHhCCCC
Confidence 46789999999984 3455666677653 358999999999988664 45755311111112211111 1 1346
Q ss_pred CCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 407 CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 407 fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
+|+|+- |.|.. .+..++++|++||+++..
T Consensus 218 ~D~vid---~~g~~--------------------------~~~~~~~~l~~~G~iv~~ 246 (334)
T 3qwb_A 218 VDASFD---SVGKD--------------------------TFEISLAALKRKGVFVSF 246 (334)
T ss_dssp EEEEEE---CCGGG--------------------------GHHHHHHHEEEEEEEEEC
T ss_pred ceEEEE---CCChH--------------------------HHHHHHHHhccCCEEEEE
Confidence 998875 33311 267788899999998854
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=94.16 E-value=0.07 Score=53.78 Aligned_cols=99 Identities=14% Similarity=0.115 Sum_probs=63.3
Q ss_pred hcCCCCCCeEEEeCC--ccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccc-cC-CC
Q 009708 330 VVDPQPGQSIVDCCA--APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NS-TV 405 (528)
Q Consensus 330 ~l~~~~g~~VLDl~a--G~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~-~~-~~ 405 (528)
...+++|++||=.|| |.|..++++++.+ +.+|++++.++++++.+++ +|.+..+. ...|..+... .. ..
T Consensus 154 ~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~----~ga~~v~~-~~~~~~~~v~~~~~~~ 226 (342)
T 4eye_A 154 RGQLRAGETVLVLGAAGGIGTAAIQIAKGM--GAKVIAVVNRTAATEFVKS----VGADIVLP-LEEGWAKAVREATGGA 226 (342)
T ss_dssp TSCCCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHH----HTCSEEEE-SSTTHHHHHHHHTTTS
T ss_pred hcCCCCCCEEEEECCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHh----cCCcEEec-CchhHHHHHHHHhCCC
Confidence 456789999999987 4466777777764 3599999999999877664 57653111 1122211111 11 23
Q ss_pred CCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 406 ~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
.+|+|+- |.|.. .+..+++.|++||+++..
T Consensus 227 g~Dvvid---~~g~~--------------------------~~~~~~~~l~~~G~iv~~ 256 (342)
T 4eye_A 227 GVDMVVD---PIGGP--------------------------AFDDAVRTLASEGRLLVV 256 (342)
T ss_dssp CEEEEEE---SCC----------------------------CHHHHHHTEEEEEEEEEC
T ss_pred CceEEEE---CCchh--------------------------HHHHHHHhhcCCCEEEEE
Confidence 6998875 43321 166788999999998853
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=94.16 E-value=0.045 Score=54.46 Aligned_cols=92 Identities=10% Similarity=0.008 Sum_probs=61.1
Q ss_pred HhcCCCCCCeEEEeCCcc-chHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCC
Q 009708 329 AVVDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC 407 (528)
Q Consensus 329 ~~l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~f 407 (528)
....+++|++||=.|+|+ |..++++|+.++ .+|++++ ++++++.+++ +|.+. ++. |...+ ...+
T Consensus 136 ~~~~~~~g~~VlV~GaG~vG~~a~qlak~~G--a~Vi~~~-~~~~~~~~~~----lGa~~---v~~-d~~~v----~~g~ 200 (315)
T 3goh_A 136 EKIPLTKQREVLIVGFGAVNNLLTQMLNNAG--YVVDLVS-ASLSQALAAK----RGVRH---LYR-EPSQV----TQKY 200 (315)
T ss_dssp TTSCCCSCCEEEEECCSHHHHHHHHHHHHHT--CEEEEEC-SSCCHHHHHH----HTEEE---EES-SGGGC----CSCE
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEE-ChhhHHHHHH----cCCCE---EEc-CHHHh----CCCc
Confidence 445678999999999964 667778887753 4999999 9998887754 57643 233 42222 4679
Q ss_pred CEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 408 DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 408 D~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
|+|| | |+|... +..+++.|++||+++..
T Consensus 201 Dvv~-d--~~g~~~--------------------------~~~~~~~l~~~G~~v~~ 228 (315)
T 3goh_A 201 FAIF-D--AVNSQN--------------------------AAALVPSLKANGHIICI 228 (315)
T ss_dssp EEEE-C--C---------------------------------TTGGGEEEEEEEEEE
T ss_pred cEEE-E--CCCchh--------------------------HHHHHHHhcCCCEEEEE
Confidence 9886 3 433111 35578899999998865
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=93.96 E-value=0.26 Score=47.40 Aligned_cols=126 Identities=13% Similarity=0.025 Sum_probs=76.3
Q ss_pred CCCeEEEeCCccc-hHHHHHHHHc-CCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------C
Q 009708 335 PGQSIVDCCAAPG-GKTLYMASCL-SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------S 403 (528)
Q Consensus 335 ~g~~VLDl~aG~G-~kt~~la~~~-~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~ 403 (528)
.|.++|=.|++.+ |++..+|+.+ ..+.+|+.+|.++..++.+.+.++..+-.. +.++..|+.+.... .
T Consensus 5 ~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~~~~~~-~~~~~~Dv~~~~~v~~~~~~~~~~ 83 (256)
T 4fs3_A 5 ENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQLNQPE-AHLYQIDVQSDEEVINGFEQIGKD 83 (256)
T ss_dssp TTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHGGGTCSS-CEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCc-EEEEEccCCCHHHHHHHHHHHHHH
Confidence 4778999987653 4555555433 235689999999999998888888776543 67888998764221 1
Q ss_pred CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHH----HHHHHHHHHHHhccCcCCCEEEEE
Q 009708 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEEL----KILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 404 ~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l----~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
.+..|.++.++-..+...+.... ...+.++.... ......+...+..+++.||.+|..
T Consensus 84 ~G~iD~lvnnAg~~~~~~~~~~~---~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~IVni 145 (256)
T 4fs3_A 84 VGNIDGVYHSIAFANMEDLRGRF---SETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVAT 145 (256)
T ss_dssp HCCCSEEEECCCCCCGGGGTSCG---GGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTCEEEEEE
T ss_pred hCCCCEEEecccccccccccccc---ccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEE
Confidence 25799999887654432221111 11122222211 111223445667788889988854
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=93.92 E-value=0.09 Score=53.46 Aligned_cols=100 Identities=14% Similarity=0.100 Sum_probs=63.0
Q ss_pred hcCCCCCCeEEEeCC--ccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccc-ccCCCC
Q 009708 330 VVDPQPGQSIVDCCA--APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA-DNSTVK 406 (528)
Q Consensus 330 ~l~~~~g~~VLDl~a--G~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~-~~~~~~ 406 (528)
..++++|++||-.|+ |.|..+++++... +.+|++++.++++++.+++ +|.+..+.....|..+.. ......
T Consensus 158 ~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~--Ga~Vi~~~~~~~~~~~~~~----~Ga~~~~~~~~~~~~~~~~~~~~~g 231 (362)
T 2c0c_A 158 LGGLSEGKKVLVTAAAGGTGQFAMQLSKKA--KCHVIGTCSSDEKSAFLKS----LGCDRPINYKTEPVGTVLKQEYPEG 231 (362)
T ss_dssp HTCCCTTCEEEETTTTBTTHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----TTCSEEEETTTSCHHHHHHHHCTTC
T ss_pred hcCCCCCCEEEEeCCCcHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHH----cCCcEEEecCChhHHHHHHHhcCCC
Confidence 456889999999983 4466677777764 3589999999998877654 676531111111221111 111246
Q ss_pred CCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 407 CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 407 fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
+|+|+- |.|. ..+..+++.|++||+++..
T Consensus 232 ~D~vid---~~g~--------------------------~~~~~~~~~l~~~G~iv~~ 260 (362)
T 2c0c_A 232 VDVVYE---SVGG--------------------------AMFDLAVDALATKGRLIVI 260 (362)
T ss_dssp EEEEEE---CSCT--------------------------HHHHHHHHHEEEEEEEEEC
T ss_pred CCEEEE---CCCH--------------------------HHHHHHHHHHhcCCEEEEE
Confidence 898875 3331 1266788899999998854
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.87 E-value=0.13 Score=51.92 Aligned_cols=101 Identities=15% Similarity=0.118 Sum_probs=61.6
Q ss_pred cCCCCCCeEEEeCC--ccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEE-cCcccccccc-CCCC
Q 009708 331 VDPQPGQSIVDCCA--APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTI-HADLRTFADN-STVK 406 (528)
Q Consensus 331 l~~~~g~~VLDl~a--G~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~-~~D~~~~~~~-~~~~ 406 (528)
.++++|++||-.|+ |.|..+.+++... +.+|+++|.++.+++.++ .+|.+..+... ..|....... ..+.
T Consensus 165 ~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~--Ga~V~~~~~~~~~~~~~~----~~g~~~~~d~~~~~~~~~~~~~~~~~~ 238 (347)
T 2hcy_A 165 ANLMAGHWVAISGAAGGLGSLAVQYAKAM--GYRVLGIDGGEGKEELFR----SIGGEVFIDFTKEKDIVGAVLKATDGG 238 (347)
T ss_dssp TTCCTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEECSTTHHHHHH----HTTCCEEEETTTCSCHHHHHHHHHTSC
T ss_pred cCCCCCCEEEEECCCchHHHHHHHHHHHC--CCcEEEEcCCHHHHHHHH----HcCCceEEecCccHhHHHHHHHHhCCC
Confidence 46788999999998 3455666666653 358999999998887654 35654211110 0111111111 1126
Q ss_pred CCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 407 CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 407 fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
+|+|+... |. ...+..+++.|++||+++...
T Consensus 239 ~D~vi~~~---g~-------------------------~~~~~~~~~~l~~~G~iv~~g 269 (347)
T 2hcy_A 239 AHGVINVS---VS-------------------------EAAIEASTRYVRANGTTVLVG 269 (347)
T ss_dssp EEEEEECS---SC-------------------------HHHHHHHTTSEEEEEEEEECC
T ss_pred CCEEEECC---Cc-------------------------HHHHHHHHHHHhcCCEEEEEe
Confidence 89887632 21 013778899999999988543
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=93.84 E-value=0.091 Score=52.57 Aligned_cols=101 Identities=16% Similarity=0.102 Sum_probs=60.6
Q ss_pred HhcCCCCCCeEEEeCC--ccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEc-Ccccccc-ccCC
Q 009708 329 AVVDPQPGQSIVDCCA--APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH-ADLRTFA-DNST 404 (528)
Q Consensus 329 ~~l~~~~g~~VLDl~a--G~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~-~D~~~~~-~~~~ 404 (528)
...++++|++||-.|| |.|..+.+++... +.+|+++|.++++++.++ .+|....+.... .|..... ....
T Consensus 139 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~--G~~V~~~~~~~~~~~~~~----~~g~~~~~d~~~~~~~~~~~~~~~~ 212 (333)
T 1v3u_A 139 EVCGVKGGETVLVSAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKIAYLK----QIGFDAAFNYKTVNSLEEALKKASP 212 (333)
T ss_dssp TTSCCCSSCEEEEESTTBHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHH----HTTCSEEEETTSCSCHHHHHHHHCT
T ss_pred HhhCCCCCCEEEEecCCCcHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHH----hcCCcEEEecCCHHHHHHHHHHHhC
Confidence 3456789999999997 3444555555543 358999999998887663 346542111111 1111111 1112
Q ss_pred CCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 405 ~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
+.+|.|+.. .| . ..+..+++.|++||+++..
T Consensus 213 ~~~d~vi~~---~g--~------------------------~~~~~~~~~l~~~G~~v~~ 243 (333)
T 1v3u_A 213 DGYDCYFDN---VG--G------------------------EFLNTVLSQMKDFGKIAIC 243 (333)
T ss_dssp TCEEEEEES---SC--H------------------------HHHHHHHTTEEEEEEEEEC
T ss_pred CCCeEEEEC---CC--h------------------------HHHHHHHHHHhcCCEEEEE
Confidence 468988753 22 0 1267788999999998854
|
| >3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A* | Back alignment and structure |
|---|
Probab=93.79 E-value=0.16 Score=60.04 Aligned_cols=80 Identities=13% Similarity=0.218 Sum_probs=57.2
Q ss_pred CeEEEeCCccchHHHHHHHHcCCC-cEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccc-------------c
Q 009708 337 QSIVDCCAAPGGKTLYMASCLSGQ-GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-------------N 402 (528)
Q Consensus 337 ~~VLDl~aG~G~kt~~la~~~~~~-~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~-------------~ 402 (528)
-++|||+||.||.++-+-+. +- -.+.|+|+++.+++..+.|. ++ ..++++|+..+.. .
T Consensus 852 l~viDLFsG~GGlslGfe~A--G~~~vv~avEid~~A~~ty~~N~-----p~-~~~~~~DI~~l~~~~~~gdi~~~~~~~ 923 (1330)
T 3av4_A 852 LRTLDVFSGCGGLSEGFHQA--GISETLWAIEMWDPAAQAFRLNN-----PG-TTVFTEDCNVLLKLVMAGEVTNSLGQR 923 (1330)
T ss_dssp EEEEEETCTTSHHHHHHHHT--TSEEEEEEECCSHHHHHHHHHHC-----TT-SEEECSCHHHHHHHHTTTCSBCSSCCB
T ss_pred ceEEecccCccHHHHHHHHC--CCCceEEEEECCHHHHHHHHHhC-----CC-CcEeeccHHHHhHhhhccchhhhhhhh
Confidence 47999999999999887653 21 24789999999999888774 22 3456666553310 0
Q ss_pred C--CCCCCEEEEcCCCCCCccccC
Q 009708 403 S--TVKCDKVLLDAPCSGLGVLSK 424 (528)
Q Consensus 403 ~--~~~fD~Vl~D~Pcsg~G~~~~ 424 (528)
. .+.+|+|+.-|||.+....++
T Consensus 924 lp~~~~vDvl~GGpPCQ~FS~agr 947 (1330)
T 3av4_A 924 LPQKGDVEMLCGGPPCQGFSGMNR 947 (1330)
T ss_dssp CCCTTTCSEEEECCCCTTTCSSSC
T ss_pred ccccCccceEEecCCCcccccccc
Confidence 1 246899999999988766554
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=93.78 E-value=0.073 Score=53.73 Aligned_cols=94 Identities=16% Similarity=0.123 Sum_probs=58.9
Q ss_pred CCCeEEEeC-Cc-cchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccc-cccCCCCCCEEE
Q 009708 335 PGQSIVDCC-AA-PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF-ADNSTVKCDKVL 411 (528)
Q Consensus 335 ~g~~VLDl~-aG-~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~-~~~~~~~fD~Vl 411 (528)
+|++||=.| +| .|..++++|+.+ +.+|+++|.++++++.+++ +|.+..+. ...|.... .......+|+|+
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~----lGa~~vi~-~~~~~~~~~~~~~~~g~Dvv~ 222 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAY--GLRVITTASRNETIEWTKK----MGADIVLN-HKESLLNQFKTQGIELVDYVF 222 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEECCSHHHHHHHHH----HTCSEEEC-TTSCHHHHHHHHTCCCEEEEE
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHh----cCCcEEEE-CCccHHHHHHHhCCCCccEEE
Confidence 899999883 43 355667777764 3599999999999887765 57653111 11121111 111234699887
Q ss_pred EcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEE
Q 009708 412 LDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463 (528)
Q Consensus 412 ~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvy 463 (528)
- |+|.. ..+..++++|++||+++.
T Consensus 223 d---~~g~~-------------------------~~~~~~~~~l~~~G~iv~ 246 (346)
T 3fbg_A 223 C---TFNTD-------------------------MYYDDMIQLVKPRGHIAT 246 (346)
T ss_dssp E---SSCHH-------------------------HHHHHHHHHEEEEEEEEE
T ss_pred E---CCCch-------------------------HHHHHHHHHhccCCEEEE
Confidence 4 43311 136778899999999974
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=93.74 E-value=0.11 Score=52.34 Aligned_cols=101 Identities=14% Similarity=0.148 Sum_probs=61.7
Q ss_pred cCCCCCCeEEEeCCc--cchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccc-ccccCC-CC
Q 009708 331 VDPQPGQSIVDCCAA--PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT-FADNST-VK 406 (528)
Q Consensus 331 l~~~~g~~VLDl~aG--~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~-~~~~~~-~~ 406 (528)
..+++|++||-.|+| .|..+++++.... +.+|+++|.++++++.+++ +|.+..+.....|... ...... +.
T Consensus 166 ~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~-Ga~Vi~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~ 240 (347)
T 1jvb_A 166 ASLDPTKTLLVVGAGGGLGTMAVQIAKAVS-GATIIGVDVREEAVEAAKR----AGADYVINASMQDPLAEIRRITESKG 240 (347)
T ss_dssp TTCCTTCEEEEETTTSHHHHHHHHHHHHHT-CCEEEEEESSHHHHHHHHH----HTCSEEEETTTSCHHHHHHHHTTTSC
T ss_pred cCCCCCCEEEEECCCccHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----hCCCEEecCCCccHHHHHHHHhcCCC
Confidence 567899999999987 4445566666541 3589999999999887643 4654311111111100 111111 46
Q ss_pred CCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 407 CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 407 fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
+|.|+-. .|.. ..+..++++|++||+++..
T Consensus 241 ~d~vi~~---~g~~-------------------------~~~~~~~~~l~~~G~iv~~ 270 (347)
T 1jvb_A 241 VDAVIDL---NNSE-------------------------KTLSVYPKALAKQGKYVMV 270 (347)
T ss_dssp EEEEEES---CCCH-------------------------HHHTTGGGGEEEEEEEEEC
T ss_pred ceEEEEC---CCCH-------------------------HHHHHHHHHHhcCCEEEEE
Confidence 8988753 2211 1367788999999998853
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=93.65 E-value=0.091 Score=53.19 Aligned_cols=101 Identities=15% Similarity=0.162 Sum_probs=62.5
Q ss_pred hcCCCCCCeEEEeCC--ccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccc-ccCCCC
Q 009708 330 VVDPQPGQSIVDCCA--APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA-DNSTVK 406 (528)
Q Consensus 330 ~l~~~~g~~VLDl~a--G~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~-~~~~~~ 406 (528)
...+++|++||-.|+ |.|..++++++.. +.+|+++|.++++++.+++ +|.+..+.....|..... ......
T Consensus 162 ~~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~----lGa~~~~~~~~~~~~~~~~~~~~~g 235 (353)
T 4dup_A 162 MAGLTEGESVLIHGGTSGIGTTAIQLARAF--GAEVYATAGSTGKCEACER----LGAKRGINYRSEDFAAVIKAETGQG 235 (353)
T ss_dssp TTCCCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----HTCSEEEETTTSCHHHHHHHHHSSC
T ss_pred hcCCCCCCEEEEEcCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHh----cCCCEEEeCCchHHHHHHHHHhCCC
Confidence 346789999998843 3455666777654 3589999999999987764 566532211111211111 111356
Q ss_pred CCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 407 CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 407 fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
+|+|+- |.|.. .+..+++.|++||+++...
T Consensus 236 ~Dvvid---~~g~~--------------------------~~~~~~~~l~~~G~iv~~g 265 (353)
T 4dup_A 236 VDIILD---MIGAA--------------------------YFERNIASLAKDGCLSIIA 265 (353)
T ss_dssp EEEEEE---SCCGG--------------------------GHHHHHHTEEEEEEEEECC
T ss_pred ceEEEE---CCCHH--------------------------HHHHHHHHhccCCEEEEEE
Confidence 998875 43321 1667888999999988543
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=93.61 E-value=0.59 Score=45.81 Aligned_cols=121 Identities=13% Similarity=0.004 Sum_probs=73.7
Q ss_pred CCCeEEEeCCccc-hHHHHHHHHc-CCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------C
Q 009708 335 PGQSIVDCCAAPG-GKTLYMASCL-SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------S 403 (528)
Q Consensus 335 ~g~~VLDl~aG~G-~kt~~la~~~-~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~ 403 (528)
.|.+||=.|++.| |.+..++..+ ..+.+|+.++.++...+.+++..+..+ .+.++.+|+.+.... .
T Consensus 30 ~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dv~d~~~v~~~~~~~~~~ 106 (293)
T 3grk_A 30 QGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKKRVEPLAEELG---AFVAGHCDVADAASIDAVFETLEKK 106 (293)
T ss_dssp TTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHHT---CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC---CceEEECCCCCHHHHHHHHHHHHHh
Confidence 4778999998754 4666555543 234689999999776666666666554 367888998774321 1
Q ss_pred CCCCCEEEEcCCCCC----CccccCCchhhccCCHHHHHH----HHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 404 TVKCDKVLLDAPCSG----LGVLSKRADLRWNRRLEDMEE----LKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 404 ~~~fD~Vl~D~Pcsg----~G~~~~~pd~~~~~~~~~~~~----l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
.+..|.++.++-... .+.+.. .+.++... ...-...+++.+...++.+|.+|+.+
T Consensus 107 ~g~iD~lVnnAG~~~~~~~~~~~~~-------~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~is 169 (293)
T 3grk_A 107 WGKLDFLVHAIGFSDKDELTGRYID-------TSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLT 169 (293)
T ss_dssp TSCCSEEEECCCCCCHHHHTSCGGG-------CCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred cCCCCEEEECCccCCcccccccccc-------cCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEe
Confidence 247899998765432 111111 22233222 12223345677777777789888654
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=93.39 E-value=0.3 Score=46.65 Aligned_cols=126 Identities=13% Similarity=-0.011 Sum_probs=75.5
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC--CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC---------
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS--GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS--------- 403 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~--~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~--------- 403 (528)
.+.+||=.| |+|+.+.+++..+- .+.+|+.++.++..++.+.+.++..+. .+.++.+|+.+.....
T Consensus 3 ~~k~vlITG-asggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~ 79 (276)
T 1wma_A 3 GIHVALVTG-GNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGL--SPRFHQLDIDDLQSIRALRDFLRKE 79 (276)
T ss_dssp CCCEEEESS-CSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTC--CCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeC-CCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhcCC--eeEEEECCCCCHHHHHHHHHHHHHh
Confidence 355677555 56888888877653 356899999999888877777776553 3678889987643210
Q ss_pred CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcC
Q 009708 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466 (528)
Q Consensus 404 ~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTc 466 (528)
.+.+|.|+.++-....+.......-.|. ..+.....-...+++.+...++++|++|+.+.
T Consensus 80 ~g~id~li~~Ag~~~~~~~~~~~~~~~~---~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~sS 139 (276)
T 1wma_A 80 YGGLDVLVNNAGIAFKVADPTPFHIQAE---VTMKTNFFGTRDVCTELLPLIKPQGRVVNVSS 139 (276)
T ss_dssp HSSEEEEEECCCCCCCTTCCSCHHHHHH---HHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred cCCCCEEEECCcccccCCCccccHHHHH---hhhheeeeeHHHHHHHHHHhhCCCCEEEEECC
Confidence 1368999987654322211000001110 11111222234567777888877888887654
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=93.34 E-value=0.13 Score=51.74 Aligned_cols=99 Identities=16% Similarity=0.235 Sum_probs=62.2
Q ss_pred cCCCCCCeEEEeCC--ccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccc-ccccC-CCC
Q 009708 331 VDPQPGQSIVDCCA--APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT-FADNS-TVK 406 (528)
Q Consensus 331 l~~~~g~~VLDl~a--G~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~-~~~~~-~~~ 406 (528)
.++++|++||-.|+ |.|..+++++... +.+|+++|.++.+++.+++ +|.+..+.....|..+ +.... ...
T Consensus 162 ~~~~~g~~vlV~Gasg~iG~~~~~~a~~~--G~~Vi~~~~~~~~~~~~~~----~ga~~~~d~~~~~~~~~~~~~~~~~~ 235 (343)
T 2eih_A 162 LGVRPGDDVLVMAAGSGVSVAAIQIAKLF--GARVIATAGSEDKLRRAKA----LGADETVNYTHPDWPKEVRRLTGGKG 235 (343)
T ss_dssp SCCCTTCEEEECSTTSTTHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----HTCSEEEETTSTTHHHHHHHHTTTTC
T ss_pred cCCCCCCEEEEECCCchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHh----cCCCEEEcCCcccHHHHHHHHhCCCC
Confidence 36788999999998 4566677777764 3589999999999887753 4654311111111111 11111 246
Q ss_pred CCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 407 CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 407 fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
+|+|+-. .| +. .+..+++.|+++|+++..
T Consensus 236 ~d~vi~~---~g-~~-------------------------~~~~~~~~l~~~G~~v~~ 264 (343)
T 2eih_A 236 ADKVVDH---TG-AL-------------------------YFEGVIKATANGGRIAIA 264 (343)
T ss_dssp EEEEEES---SC-SS-------------------------SHHHHHHHEEEEEEEEES
T ss_pred ceEEEEC---CC-HH-------------------------HHHHHHHhhccCCEEEEE
Confidence 9988853 33 21 156678889999998854
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=93.34 E-value=0.085 Score=53.02 Aligned_cols=102 Identities=18% Similarity=0.167 Sum_probs=62.5
Q ss_pred HhcCCCCCCeEEEeCC--ccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEc-Cccccccc-cCC
Q 009708 329 AVVDPQPGQSIVDCCA--APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH-ADLRTFAD-NST 404 (528)
Q Consensus 329 ~~l~~~~g~~VLDl~a--G~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~-~D~~~~~~-~~~ 404 (528)
...++++|++||-.|| |.|..+++++... +.+|+++|.++.+++.+++ .+|.+..+.... .|...... ...
T Consensus 149 ~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~--G~~V~~~~~~~~~~~~~~~---~~g~~~~~d~~~~~~~~~~~~~~~~ 223 (345)
T 2j3h_A 149 EVCSPKEGETVYVSAASGAVGQLVGQLAKMM--GCYVVGSAGSKEKVDLLKT---KFGFDDAFNYKEESDLTAALKRCFP 223 (345)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH---TSCCSEEEETTSCSCSHHHHHHHCT
T ss_pred HHhCCCCCCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH---HcCCceEEecCCHHHHHHHHHHHhC
Confidence 3456789999999997 4455666666653 3589999999998877642 346543111100 11111111 112
Q ss_pred CCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 405 ~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
..+|+|+- |.|. ..+..+++.|++||+++..
T Consensus 224 ~~~d~vi~---~~g~--------------------------~~~~~~~~~l~~~G~~v~~ 254 (345)
T 2j3h_A 224 NGIDIYFE---NVGG--------------------------KMLDAVLVNMNMHGRIAVC 254 (345)
T ss_dssp TCEEEEEE---SSCH--------------------------HHHHHHHTTEEEEEEEEEC
T ss_pred CCCcEEEE---CCCH--------------------------HHHHHHHHHHhcCCEEEEE
Confidence 46898875 2220 1267788999999998853
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=93.31 E-value=0.21 Score=50.51 Aligned_cols=98 Identities=15% Similarity=0.075 Sum_probs=60.4
Q ss_pred cCCC-CCCeEEEeCCcc-chHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCC
Q 009708 331 VDPQ-PGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCD 408 (528)
Q Consensus 331 l~~~-~g~~VLDl~aG~-G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD 408 (528)
..++ +|++||=.|+|+ |..++++|+.++ .+|+++|.++++++.++ +.+|.+..+ -..|..... .....+|
T Consensus 175 ~~~~~~g~~VlV~GaG~vG~~a~qlak~~G--a~Vi~~~~~~~~~~~~~---~~lGa~~vi--~~~~~~~~~-~~~~g~D 246 (357)
T 2cf5_A 175 FGLKQPGLRGGILGLGGVGHMGVKIAKAMG--HHVTVISSSNKKREEAL---QDLGADDYV--IGSDQAKMS-ELADSLD 246 (357)
T ss_dssp TSTTSTTCEEEEECCSHHHHHHHHHHHHHT--CEEEEEESSTTHHHHHH---TTSCCSCEE--ETTCHHHHH-HSTTTEE
T ss_pred cCCCCCCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEeCChHHHHHHH---HHcCCceee--ccccHHHHH-HhcCCCC
Confidence 4667 899999998754 445566666643 58999999998887654 246765422 112211111 1124689
Q ss_pred EEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 409 KVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 409 ~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
+||- |+|... .+..++++|++||+++..
T Consensus 247 ~vid---~~g~~~-------------------------~~~~~~~~l~~~G~iv~~ 274 (357)
T 2cf5_A 247 YVID---TVPVHH-------------------------ALEPYLSLLKLDGKLILM 274 (357)
T ss_dssp EEEE---CCCSCC-------------------------CSHHHHTTEEEEEEEEEC
T ss_pred EEEE---CCCChH-------------------------HHHHHHHHhccCCEEEEe
Confidence 8874 333210 155677889999988754
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=93.28 E-value=0.11 Score=52.48 Aligned_cols=98 Identities=18% Similarity=0.125 Sum_probs=61.0
Q ss_pred hcCCCCCCeEEEeCCcc-chHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcC---cccccccc--C
Q 009708 330 VVDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA---DLRTFADN--S 403 (528)
Q Consensus 330 ~l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~---D~~~~~~~--~ 403 (528)
..++ +|++||-.|+|+ |..++++|+.++ ..+|+++|.++++++.++ .+|.+. ++.. |..+.... .
T Consensus 163 ~~~~-~g~~VlV~GaG~vG~~~~q~a~~~G-a~~Vi~~~~~~~~~~~~~----~~Ga~~---~~~~~~~~~~~~v~~~~~ 233 (348)
T 2d8a_A 163 AGPI-SGKSVLITGAGPLGLLGIAVAKASG-AYPVIVSEPSDFRRELAK----KVGADY---VINPFEEDVVKEVMDITD 233 (348)
T ss_dssp TSCC-TTCCEEEECCSHHHHHHHHHHHHTT-CCSEEEECSCHHHHHHHH----HHTCSE---EECTTTSCHHHHHHHHTT
T ss_pred hcCC-CCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHH----HhCCCE---EECCCCcCHHHHHHHHcC
Confidence 3467 899999999854 555666666542 338999999999988765 356653 2222 21111111 1
Q ss_pred CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 404 ~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
...+|+|+- |+|. ...+..+++.|++||+++..
T Consensus 234 g~g~D~vid---~~g~-------------------------~~~~~~~~~~l~~~G~iv~~ 266 (348)
T 2d8a_A 234 GNGVDVFLE---FSGA-------------------------PKALEQGLQAVTPAGRVSLL 266 (348)
T ss_dssp TSCEEEEEE---CSCC-------------------------HHHHHHHHHHEEEEEEEEEC
T ss_pred CCCCCEEEE---CCCC-------------------------HHHHHHHHHHHhcCCEEEEE
Confidence 236998875 3221 01367778889999998854
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=93.00 E-value=0.19 Score=50.25 Aligned_cols=100 Identities=15% Similarity=0.108 Sum_probs=61.4
Q ss_pred hcCCCCCCeEEEeCC--ccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccc-cccc-CCC
Q 009708 330 VVDPQPGQSIVDCCA--APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT-FADN-STV 405 (528)
Q Consensus 330 ~l~~~~g~~VLDl~a--G~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~-~~~~-~~~ 405 (528)
..++++|++||-.|+ |.|..+.+++... +.+|+++|.++++++.+++ +|.+..+.....|..+ +... ...
T Consensus 140 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~--G~~Vi~~~~~~~~~~~~~~----~g~~~~~d~~~~~~~~~i~~~~~~~ 213 (333)
T 1wly_A 140 THKVKPGDYVLIHAAAGGMGHIMVPWARHL--GATVIGTVSTEEKAETARK----LGCHHTINYSTQDFAEVVREITGGK 213 (333)
T ss_dssp TSCCCTTCEEEETTTTSTTHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----HTCSEEEETTTSCHHHHHHHHHTTC
T ss_pred hhCCCCCCEEEEECCccHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCCCEEEECCCHHHHHHHHHHhCCC
Confidence 346788999999985 4455666666653 3589999999988887754 4654211111111111 1110 124
Q ss_pred CCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 406 ~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
.+|+|+- |.|.. .+..+++.|++||+++..
T Consensus 214 ~~d~vi~---~~g~~--------------------------~~~~~~~~l~~~G~iv~~ 243 (333)
T 1wly_A 214 GVDVVYD---SIGKD--------------------------TLQKSLDCLRPRGMCAAY 243 (333)
T ss_dssp CEEEEEE---CSCTT--------------------------THHHHHHTEEEEEEEEEC
T ss_pred CCeEEEE---CCcHH--------------------------HHHHHHHhhccCCEEEEE
Confidence 6898885 33311 167788999999998753
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=92.79 E-value=0.15 Score=50.30 Aligned_cols=91 Identities=21% Similarity=0.150 Sum_probs=59.6
Q ss_pred CCCCCeEEEeCC--ccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcc-ccccccCCCCCCE
Q 009708 333 PQPGQSIVDCCA--APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL-RTFADNSTVKCDK 409 (528)
Q Consensus 333 ~~~g~~VLDl~a--G~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~-~~~~~~~~~~fD~ 409 (528)
+++|++||-.|+ |.|..+++++..+ +.+|+++|.++++++.++ .+|.+. + +..+- .++.... ..+|.
T Consensus 123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~----~~ga~~-~--~~~~~~~~~~~~~-~~~d~ 192 (302)
T 1iz0_A 123 ARPGEKVLVQAAAGALGTAAVQVARAM--GLRVLAAASRPEKLALPL----ALGAEE-A--ATYAEVPERAKAW-GGLDL 192 (302)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHT--TCEEEEEESSGGGSHHHH----HTTCSE-E--EEGGGHHHHHHHT-TSEEE
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHH----hcCCCE-E--EECCcchhHHHHh-cCceE
Confidence 788999999997 3456667777764 358999999999887764 357653 2 21111 1121111 46898
Q ss_pred EEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEE
Q 009708 410 VLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463 (528)
Q Consensus 410 Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvy 463 (528)
|+- ..- . .+..+++.|++||+++.
T Consensus 193 vid-~g~---~--------------------------~~~~~~~~l~~~G~~v~ 216 (302)
T 1iz0_A 193 VLE-VRG---K--------------------------EVEESLGLLAHGGRLVY 216 (302)
T ss_dssp EEE-CSC---T--------------------------THHHHHTTEEEEEEEEE
T ss_pred EEE-CCH---H--------------------------HHHHHHHhhccCCEEEE
Confidence 874 321 1 16778899999999884
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=92.67 E-value=0.94 Score=43.74 Aligned_cols=121 Identities=15% Similarity=0.089 Sum_probs=74.7
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccc---------cCC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD---------NST 404 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~---------~~~ 404 (528)
.|.++|=-|++. |.+..+|..+- .+.+|+.+|.+++.++.+.+.++..|.+ +..+.+|+.+... ...
T Consensus 8 ~gKvalVTGas~-GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~~--~~~~~~Dv~~~~~v~~~~~~~~~~~ 84 (255)
T 4g81_D 8 TGKTALVTGSAR-GLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKGYD--AHGVAFDVTDELAIEAAFSKLDAEG 84 (255)
T ss_dssp TTCEEEETTCSS-HHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCC--EEECCCCTTCHHHHHHHHHHHHHTT
T ss_pred CCCEEEEeCCCc-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCc--EEEEEeeCCCHHHHHHHHHHHHHHC
Confidence 377777777665 56666665442 3569999999999999888888887754 6788999877422 113
Q ss_pred CCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHH----HHHHHHHHHhccC---cCCCEEEEEc
Q 009708 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKI----LQDELLDAASLLV---KPGGVLVYST 465 (528)
Q Consensus 405 ~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~----~q~~lL~~a~~~L---kpGG~LvysT 465 (528)
++.|.++.++-....+.+... +.++.++..+ -...+.+.+...+ +.+|.+|..+
T Consensus 85 G~iDiLVNNAG~~~~~~~~~~-------~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~~G~IVnis 145 (255)
T 4g81_D 85 IHVDILINNAGIQYRKPMVEL-------ELENWQKVIDTNLTSAFLVSRSAAKRMIARNSGGKIINIG 145 (255)
T ss_dssp CCCCEEEECCCCCCCCCGGGC-------CHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEEC
T ss_pred CCCcEEEECCCCCCCCChhhC-------CHHHHHHHHHHHhHHHHHHHHHHHHHHHHccCCCEEEEEe
Confidence 578999987754433333332 3333332211 1223445555555 2467877543
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=92.64 E-value=0.61 Score=44.62 Aligned_cols=122 Identities=14% Similarity=0.198 Sum_probs=73.9
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
.|.+||=.|++ |+.+.++++.+- .+.+|+.+|.++..++.+.+.+ + ..+.++..|+.+.... ..
T Consensus 7 ~gk~~lVTGas-~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (255)
T 4eso_A 7 QGKKAIVIGGT-HGMGLATVRRLVEGGAEVLLTGRNESNIARIREEF---G--PRVHALRSDIADLNEIAVLGAAAGQTL 80 (255)
T ss_dssp TTCEEEEETCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---G--GGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C--CcceEEEccCCCHHHHHHHHHHHHHHh
Confidence 46788888865 566776666542 3468999999998887666544 2 2478889998874321 02
Q ss_pred CCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 405 ~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
+..|.++.++-.+..+.+...+.-.|. ..+.....-...+++.+...++.+|.+|+.+
T Consensus 81 g~id~lv~nAg~~~~~~~~~~~~~~~~---~~~~~N~~g~~~~~~~~~~~~~~~g~iv~is 138 (255)
T 4eso_A 81 GAIDLLHINAGVSELEPFDQVSEASYD---RQFAVNTKGAFFTVQRLTPLIREGGSIVFTS 138 (255)
T ss_dssp SSEEEEEECCCCCCCBCGGGCCHHHHH---HHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHH---HHHHHhhHHHHHHHHHHHHHHhcCCEEEEEC
Confidence 468999987655443332222221221 1111112223346777788888889888654
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.57 E-value=0.17 Score=50.47 Aligned_cols=99 Identities=13% Similarity=0.039 Sum_probs=60.2
Q ss_pred cCCCCCC-eEEEeCC--ccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCC
Q 009708 331 VDPQPGQ-SIVDCCA--APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC 407 (528)
Q Consensus 331 l~~~~g~-~VLDl~a--G~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~f 407 (528)
.++++|+ +||-.|+ |.|..++++|+.++ .+|++++.++++++.++ .+|.+..+.....|...........+
T Consensus 144 ~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~G--a~vi~~~~~~~~~~~~~----~lGa~~~i~~~~~~~~~~~~~~~~~~ 217 (328)
T 1xa0_A 144 HGLTPERGPVLVTGATGGVGSLAVSMLAKRG--YTVEASTGKAAEHDYLR----VLGAKEVLAREDVMAERIRPLDKQRW 217 (328)
T ss_dssp TTCCGGGCCEEESSTTSHHHHHHHHHHHHTT--CCEEEEESCTTCHHHHH----HTTCSEEEECC---------CCSCCE
T ss_pred cCCCCCCceEEEecCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHH----HcCCcEEEecCCcHHHHHHHhcCCcc
Confidence 3577786 8999987 45667778887643 57999999998887764 46765322211111000111112468
Q ss_pred CEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 408 DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 408 D~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
|+|+- |+|... +..+++.+++||+++..
T Consensus 218 d~vid---~~g~~~--------------------------~~~~~~~l~~~G~~v~~ 245 (328)
T 1xa0_A 218 AAAVD---PVGGRT--------------------------LATVLSRMRYGGAVAVS 245 (328)
T ss_dssp EEEEE---CSTTTT--------------------------HHHHHHTEEEEEEEEEC
T ss_pred cEEEE---CCcHHH--------------------------HHHHHHhhccCCEEEEE
Confidence 98764 333111 66788899999998853
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.55 E-value=0.19 Score=50.05 Aligned_cols=100 Identities=14% Similarity=0.044 Sum_probs=60.4
Q ss_pred hcCCCCCCeEEEeCC--ccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccc-cccc-CCC
Q 009708 330 VVDPQPGQSIVDCCA--APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT-FADN-STV 405 (528)
Q Consensus 330 ~l~~~~g~~VLDl~a--G~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~-~~~~-~~~ 405 (528)
..++++|++||-.|+ |.|..+.+++... +.+|+++|.++++++.+++ +|.+..+.....|... +... ...
T Consensus 135 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~--G~~V~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~ 208 (327)
T 1qor_A 135 TYEIKPDEQFLFHAAAGGVGLIACQWAKAL--GAKLIGTVGTAQKAQSALK----AGAWQVINYREEDLVERLKEITGGK 208 (327)
T ss_dssp TSCCCTTCEEEESSTTBHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHH----HTCSEEEETTTSCHHHHHHHHTTTC
T ss_pred hhCCCCCCEEEEECCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCCEEEECCCccHHHHHHHHhCCC
Confidence 346788999999984 3344555555553 3589999999998887754 4654211111111111 1111 123
Q ss_pred CCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 406 ~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
.+|.|+.. .| +. .+..++++|++||+++..
T Consensus 209 ~~D~vi~~---~g-~~-------------------------~~~~~~~~l~~~G~iv~~ 238 (327)
T 1qor_A 209 KVRVVYDS---VG-RD-------------------------TWERSLDCLQRRGLMVSF 238 (327)
T ss_dssp CEEEEEEC---SC-GG-------------------------GHHHHHHTEEEEEEEEEC
T ss_pred CceEEEEC---Cc-hH-------------------------HHHHHHHHhcCCCEEEEE
Confidence 68988863 33 11 267788899999998854
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=92.37 E-value=0.055 Score=54.36 Aligned_cols=67 Identities=12% Similarity=0.153 Sum_probs=43.4
Q ss_pred cEEEE-cCccccccccC-CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 388 VIRTI-HADLRTFADNS-TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 388 ~i~~~-~~D~~~~~~~~-~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
...++ ++|+....... .++||+|++|||+... . -.|.. ...........|..+.++|+|||.+++..
T Consensus 38 ~~~l~i~gD~l~~L~~l~~~svDlI~tDPPY~~~-~------d~~~~----~~~~~~~~~~~l~~~~rvLk~~G~i~i~~ 106 (319)
T 1eg2_A 38 TRHVYDVCDCLDTLAKLPDDSVQLIICDPPYNIM-L------ADWDD----HMDYIGWAKRWLAEAERVLSPTGSIAIFG 106 (319)
T ss_dssp EEEEEEECCHHHHHHTSCTTCEEEEEECCCSBCC-G------GGGGT----CSSHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cceEEECCcHHHHHHhCccCCcCEEEECCCCCCC-C------CCccC----HHHHHHHHHHHHHHHHHHcCCCeEEEEEc
Confidence 35677 99998765433 4689999999999431 0 01210 11122234556888899999999988653
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=92.33 E-value=1.2 Score=42.79 Aligned_cols=83 Identities=13% Similarity=0.089 Sum_probs=56.8
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc-----CCCCCC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-----STVKCD 408 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~-----~~~~fD 408 (528)
.|.+||=.|++ |+.+.++++.+- .+.+|+.+|.++..++.+.+.+...+....+.++.+|..+.... ..+..|
T Consensus 9 ~~k~~lVTGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id 87 (267)
T 3t4x_A 9 KGKTALVTGST-AGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEKYPKVD 87 (267)
T ss_dssp TTCEEEETTCS-SHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHHCCCCS
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHhcCCCC
Confidence 35677777755 667777766542 35689999999999888777777665444577888888763211 124789
Q ss_pred EEEEcCCCCC
Q 009708 409 KVLLDAPCSG 418 (528)
Q Consensus 409 ~Vl~D~Pcsg 418 (528)
.++.++-...
T Consensus 88 ~lv~nAg~~~ 97 (267)
T 3t4x_A 88 ILINNLGIFE 97 (267)
T ss_dssp EEEECCCCCC
T ss_pred EEEECCCCCC
Confidence 9998765543
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=92.30 E-value=0.72 Score=45.18 Aligned_cols=125 Identities=14% Similarity=0.021 Sum_probs=74.8
Q ss_pred CCCeEEEeCCcc-chHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------C
Q 009708 335 PGQSIVDCCAAP-GGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------S 403 (528)
Q Consensus 335 ~g~~VLDl~aG~-G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~ 403 (528)
.|.+||=.|++. ++.+..+++.+- .+.+|+.+|.++...+.+.+..+..+- +.++.+|+.+.... .
T Consensus 29 ~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~---~~~~~~Dv~d~~~v~~~~~~~~~~ 105 (296)
T 3k31_A 29 EGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAESLGV---KLTVPCDVSDAESVDNMFKVLAEE 105 (296)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHHTC---CEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCC---eEEEEcCCCCHHHHHHHHHHHHHH
Confidence 367888888764 466666665442 356899999998777777766666552 46788898774321 0
Q ss_pred CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHH----HHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEEL----KILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 404 ~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l----~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
.+..|.++.++-......+. .+ .+..+.++.... ..-...+++.+...++.+|.+|+.+
T Consensus 106 ~g~iD~lVnnAG~~~~~~~~-~~--~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~is 168 (296)
T 3k31_A 106 WGSLDFVVHAVAFSDKNELK-GR--YVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLS 168 (296)
T ss_dssp HSCCSEEEECCCCCCHHHHT-SC--GGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEE
T ss_pred cCCCCEEEECCCcCCccccc-CC--hhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEE
Confidence 14789999876543310000 00 111222333222 2233456777888888889888654
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=92.28 E-value=1.1 Score=42.86 Aligned_cols=83 Identities=14% Similarity=0.095 Sum_probs=55.8
Q ss_pred CCCeEEEeCC-ccchHHHHHHHHc-CCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------C
Q 009708 335 PGQSIVDCCA-APGGKTLYMASCL-SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------S 403 (528)
Q Consensus 335 ~g~~VLDl~a-G~G~kt~~la~~~-~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~ 403 (528)
.|.+||=.|+ |. |.+.+++..+ ..+.+|+.++.+...++.+.+.++..+-. .+.++.+|+.+.... .
T Consensus 21 ~~k~vlITGasg~-GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~Dl~~~~~v~~~~~~~~~~ 98 (266)
T 3o38_A 21 KGKVVLVTAAAGT-GIGSTTARRALLEGADVVISDYHERRLGETRDQLADLGLG-RVEAVVCDVTSTEAVDALITQTVEK 98 (266)
T ss_dssp TTCEEEESSCSSS-SHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCSS-CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCC-chHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCC-ceEEEEeCCCCHHHHHHHHHHHHHH
Confidence 3667888777 34 3455554433 23568999999999998888877665533 488999999874321 0
Q ss_pred CCCCCEEEEcCCCCCC
Q 009708 404 TVKCDKVLLDAPCSGL 419 (528)
Q Consensus 404 ~~~fD~Vl~D~Pcsg~ 419 (528)
.+..|.++.++-....
T Consensus 99 ~g~id~li~~Ag~~~~ 114 (266)
T 3o38_A 99 AGRLDVLVNNAGLGGQ 114 (266)
T ss_dssp HSCCCEEEECCCCCCC
T ss_pred hCCCcEEEECCCcCCC
Confidence 1468999987665443
|
| >3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.15 E-value=1.3 Score=43.25 Aligned_cols=80 Identities=13% Similarity=0.004 Sum_probs=55.4
Q ss_pred CCeEEEeCCccchHHHHHHHHcCCC----cEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLSGQ----GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN--------- 402 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~~~----~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~--------- 402 (528)
|.+||=.|++ ||.+..++..+-.. .+|+.++.+...++.+.+.+....-...+.++.+|+.+....
T Consensus 33 ~k~~lVTGas-~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 111 (287)
T 3rku_A 33 KKTVLITGAS-AGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIENLPQ 111 (287)
T ss_dssp TCEEEEESTT-SHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHTSCG
T ss_pred CCEEEEecCC-ChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 6788888865 56777776654211 289999999999988887776653233478889998875321
Q ss_pred CCCCCCEEEEcCCC
Q 009708 403 STVKCDKVLLDAPC 416 (528)
Q Consensus 403 ~~~~fD~Vl~D~Pc 416 (528)
..+..|.++.++-.
T Consensus 112 ~~g~iD~lVnnAG~ 125 (287)
T 3rku_A 112 EFKDIDILVNNAGK 125 (287)
T ss_dssp GGCSCCEEEECCCC
T ss_pred hcCCCCEEEECCCc
Confidence 12468999987654
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=92.12 E-value=1.7 Score=41.80 Aligned_cols=126 Identities=14% Similarity=0.063 Sum_probs=74.2
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcC-ChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------C
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDI-NKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------S 403 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~-s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~ 403 (528)
.|.+||=.|++ |+.+.++++.+- .+.+|+.++. +...++.+.+.++..+.. +.++.+|+.+.... .
T Consensus 17 ~~k~~lVTGas-~gIG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Dv~~~~~v~~~~~~~~~~ 93 (270)
T 3is3_A 17 DGKVALVTGSG-RGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALGSD--AIAIKADIRQVPEIVKLFDQAVAH 93 (270)
T ss_dssp TTCEEEESCTT-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCC--EEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCc--EEEEEcCCCCHHHHHHHHHHHHHH
Confidence 36678877765 566776666543 3457887665 566777777777776643 78889998874321 0
Q ss_pred CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcC
Q 009708 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466 (528)
Q Consensus 404 ~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTc 466 (528)
.+..|.++.++-....+.+...+.-.|. ..+.....-...+++.+...++++|.+|+.+.
T Consensus 94 ~g~id~lvnnAg~~~~~~~~~~~~~~~~---~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS 153 (270)
T 3is3_A 94 FGHLDIAVSNSGVVSFGHLKDVTEEEFD---RVFSLNTRGQFFVAREAYRHLTEGGRIVLTSS 153 (270)
T ss_dssp HSCCCEEECCCCCCCCCCGGGCCHHHHH---HHHHHHTHHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHH---HHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 1468999887655433332222211221 11111122233467777788888998887654
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=92.10 E-value=2.2 Score=41.00 Aligned_cols=124 Identities=16% Similarity=0.072 Sum_probs=76.2
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCC------------hHHHHHHHHHHHHcCCCccEEEEcCccccccc
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDIN------------KGRLRILNETAKLHQVNSVIRTIHADLRTFAD 401 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s------------~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~ 401 (528)
.|.+||=.|++ |+.+.++++.+- .+.+|+.+|.+ ...++.+...++..+. .+.++.+|+.+...
T Consensus 9 ~gk~vlVTGas-~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~ 85 (287)
T 3pxx_A 9 QDKVVLVTGGA-RGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGR--KAYTAEVDVRDRAA 85 (287)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTS--CEEEEECCTTCHHH
T ss_pred CCCEEEEeCCC-ChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcCC--ceEEEEccCCCHHH
Confidence 36678877766 566766666542 34689999987 7777777777776654 37888999887432
Q ss_pred c---------CCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcC
Q 009708 402 N---------STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466 (528)
Q Consensus 402 ~---------~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTc 466 (528)
. ..+..|.++.++-....+. . .+.-.|. ..+.....-...+++.+...++.+|.+|+.+.
T Consensus 86 v~~~~~~~~~~~g~id~lv~nAg~~~~~~-~-~~~~~~~---~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS 154 (287)
T 3pxx_A 86 VSRELANAVAEFGKLDVVVANAGICPLGA-H-LPVQAFA---DAFDVDFVGVINTVHAALPYLTSGASIITTGS 154 (287)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCCCT-T-CCTHHHH---HHHHHHTHHHHHHHHHHGGGCCTTCEEEEECC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCcCcccC-c-CCHHHHH---HHhhhhhhhhHHHHHHHHHHhhcCcEEEEecc
Confidence 1 0147899998775543331 1 1111111 11111222234567788888888999887643
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=92.06 E-value=1.1 Score=44.37 Aligned_cols=83 Identities=12% Similarity=0.019 Sum_probs=59.3
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
.|.+||=.|++ |+++.+++..+- .+.+|++++.++..++.+.+.+...+....+.++..|+.+.... ..
T Consensus 7 ~~k~vlVTGas-~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 85 (319)
T 3ioy_A 7 AGRTAFVTGGA-NGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEARF 85 (319)
T ss_dssp TTCEEEEETTT-STHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEcCCc-hHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHhC
Confidence 36678888866 667777776552 34689999999999998888887766544588899998874311 12
Q ss_pred CCCCEEEEcCCCCC
Q 009708 405 VKCDKVLLDAPCSG 418 (528)
Q Consensus 405 ~~fD~Vl~D~Pcsg 418 (528)
+..|.++.++-...
T Consensus 86 g~id~lv~nAg~~~ 99 (319)
T 3ioy_A 86 GPVSILCNNAGVNL 99 (319)
T ss_dssp CCEEEEEECCCCCC
T ss_pred CCCCEEEECCCcCC
Confidence 46899998765433
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=92.05 E-value=1 Score=44.25 Aligned_cols=83 Identities=17% Similarity=0.144 Sum_probs=59.0
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC---------C
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS---------T 404 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~---------~ 404 (528)
.|.+||=.|++ |+.+.+++..+- .+.+|+.++.++..++.+.+.++..+.. +.++..|+.+..... .
T Consensus 30 ~gk~vlVTGas-~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~--~~~~~~Dv~d~~~v~~~~~~~~~~~ 106 (301)
T 3tjr_A 30 DGRAAVVTGGA-SGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQGFD--AHGVVCDVRHLDEMVRLADEAFRLL 106 (301)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCC--EEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCc--eEEEEccCCCHHHHHHHHHHHHHhC
Confidence 47788888876 566766666542 3468999999999999888888776643 788899988743210 1
Q ss_pred CCCCEEEEcCCCCCCc
Q 009708 405 VKCDKVLLDAPCSGLG 420 (528)
Q Consensus 405 ~~fD~Vl~D~Pcsg~G 420 (528)
+..|.++.++-....+
T Consensus 107 g~id~lvnnAg~~~~~ 122 (301)
T 3tjr_A 107 GGVDVVFSNAGIVVAG 122 (301)
T ss_dssp SSCSEEEECCCCCCCB
T ss_pred CCCCEEEECCCcCCCC
Confidence 4789999877554433
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=92.03 E-value=0.2 Score=50.60 Aligned_cols=100 Identities=11% Similarity=0.093 Sum_probs=59.7
Q ss_pred hcCCCCCCeEEEeCC--ccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccc-cccc-CCC
Q 009708 330 VVDPQPGQSIVDCCA--APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT-FADN-STV 405 (528)
Q Consensus 330 ~l~~~~g~~VLDl~a--G~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~-~~~~-~~~ 405 (528)
..++++|++||-.|+ |.|..+++++... +.+|+++|.++++++.++ .+|.+..+.....|..+ +... ...
T Consensus 157 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~ 230 (354)
T 2j8z_A 157 VGNVQAGDYVLIHAGLSGVGTAAIQLTRMA--GAIPLVTAGSQKKLQMAE----KLGAAAGFNYKKEDFSEATLKFTKGA 230 (354)
T ss_dssp TSCCCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHH----HHTCSEEEETTTSCHHHHHHHHTTTS
T ss_pred hcCCCCCCEEEEECCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHH----HcCCcEEEecCChHHHHHHHHHhcCC
Confidence 346788999999884 3445555666553 358999999999988774 34654211111111111 1111 124
Q ss_pred CCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 406 ~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
.+|.|+- |.|... +..+++.|++||+++..
T Consensus 231 ~~d~vi~---~~G~~~--------------------------~~~~~~~l~~~G~iv~~ 260 (354)
T 2j8z_A 231 GVNLILD---CIGGSY--------------------------WEKNVNCLALDGRWVLY 260 (354)
T ss_dssp CEEEEEE---SSCGGG--------------------------HHHHHHHEEEEEEEEEC
T ss_pred CceEEEE---CCCchH--------------------------HHHHHHhccCCCEEEEE
Confidence 6898875 333111 56678889999998854
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=91.97 E-value=0.25 Score=51.56 Aligned_cols=51 Identities=10% Similarity=0.061 Sum_probs=37.9
Q ss_pred cCCCCCCeEEEeCC--ccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCc
Q 009708 331 VDPQPGQSIVDCCA--APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS 387 (528)
Q Consensus 331 l~~~~g~~VLDl~a--G~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~ 387 (528)
.++++|++||=.|+ |.|..++++++.+ +.+|++++.++++++.++ .+|.+.
T Consensus 216 ~~~~~g~~VlV~GasG~iG~~a~qla~~~--Ga~vi~~~~~~~~~~~~~----~lGa~~ 268 (447)
T 4a0s_A 216 AQMKQGDIVLIWGASGGLGSYAIQFVKNG--GGIPVAVVSSAQKEAAVR----ALGCDL 268 (447)
T ss_dssp TCCCTTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHH----HTTCCC
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHH----hcCCCE
Confidence 56789999999886 3355666777664 358999999999988764 467764
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=91.82 E-value=0.48 Score=48.08 Aligned_cols=98 Identities=16% Similarity=0.100 Sum_probs=58.5
Q ss_pred cCCC-CCCeEEEeCCcc-chHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCC
Q 009708 331 VDPQ-PGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCD 408 (528)
Q Consensus 331 l~~~-~g~~VLDl~aG~-G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD 408 (528)
..+. +|++||=.|+|+ |..++++|+.+ +.+|++++.++.+++.++ +.+|.+. + +-..+..... ...+.+|
T Consensus 182 ~~~~~~g~~VlV~GaG~vG~~~~q~a~~~--Ga~Vi~~~~~~~~~~~~~---~~lGa~~-v-~~~~~~~~~~-~~~~~~D 253 (366)
T 1yqd_A 182 FGLDEPGKHIGIVGLGGLGHVAVKFAKAF--GSKVTVISTSPSKKEEAL---KNFGADS-F-LVSRDQEQMQ-AAAGTLD 253 (366)
T ss_dssp TTCCCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCGGGHHHHH---HTSCCSE-E-EETTCHHHHH-HTTTCEE
T ss_pred cCcCCCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHH---HhcCCce-E-EeccCHHHHH-HhhCCCC
Confidence 4566 899999998754 44455666653 358999999998887654 2467653 1 1112211111 1124689
Q ss_pred EEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 409 KVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 409 ~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
+|+- |+|... .+..+++.|++||+++..
T Consensus 254 ~vid---~~g~~~-------------------------~~~~~~~~l~~~G~iv~~ 281 (366)
T 1yqd_A 254 GIID---TVSAVH-------------------------PLLPLFGLLKSHGKLILV 281 (366)
T ss_dssp EEEE---CCSSCC-------------------------CSHHHHHHEEEEEEEEEC
T ss_pred EEEE---CCCcHH-------------------------HHHHHHHHHhcCCEEEEE
Confidence 8875 333210 145567778889988754
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=91.81 E-value=1.6 Score=41.54 Aligned_cols=128 Identities=15% Similarity=0.033 Sum_probs=76.4
Q ss_pred CCCeEEEeCCccc-hHHHHHHHHc-CCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------C
Q 009708 335 PGQSIVDCCAAPG-GKTLYMASCL-SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------S 403 (528)
Q Consensus 335 ~g~~VLDl~aG~G-~kt~~la~~~-~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~ 403 (528)
.|.+||=.|++.| |.+..++..+ ..+.+|+.++.+....+.+.+..+..+-. .+.++.+|+.+.... .
T Consensus 6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~v~~~~~~~~~~ 84 (266)
T 3oig_A 6 EGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLDRN-DSIILPCDVTNDAEIETCFASIKEQ 84 (266)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHTSSSC-CCEEEECCCSSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHhcCCC-CceEEeCCCCCHHHHHHHHHHHHHH
Confidence 3678888887743 4565555544 23568999999987777777776666543 478889998874321 0
Q ss_pred CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHH----HHHHHHHHHHHhccCcCCCEEEEEcC
Q 009708 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEEL----KILQDELLDAASLLVKPGGVLVYSTC 466 (528)
Q Consensus 404 ~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l----~~~q~~lL~~a~~~LkpGG~LvysTc 466 (528)
.+.+|.++.++-....+.... ..+..+.++.... ..-...+++.+...++++|.+|+.+.
T Consensus 85 ~g~id~li~~Ag~~~~~~~~~---~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS 148 (266)
T 3oig_A 85 VGVIHGIAHCIAFANKEELVG---EYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTY 148 (266)
T ss_dssp HSCCCEEEECCCCCCGGGGSS---CGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEEC
T ss_pred hCCeeEEEEcccccccccccc---chhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEec
Confidence 146899998765543110000 0111233333322 22233467778888888898886543
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=91.80 E-value=0.17 Score=51.12 Aligned_cols=101 Identities=12% Similarity=0.058 Sum_probs=60.8
Q ss_pred hcCCCCCCeEEEeCC--ccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccc-cccc-CCC
Q 009708 330 VVDPQPGQSIVDCCA--APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT-FADN-STV 405 (528)
Q Consensus 330 ~l~~~~g~~VLDl~a--G~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~-~~~~-~~~ 405 (528)
..++++|++||-.|+ |.|..+++++... +.+|++++.++++++.++ .+|.+..+.....|... +... ...
T Consensus 165 ~~~~~~g~~vlV~GasggiG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~----~~ga~~~~d~~~~~~~~~~~~~~~~~ 238 (351)
T 1yb5_A 165 SACVKAGESVLVHGASGGVGLAACQIARAY--GLKILGTAGTEEGQKIVL----QNGAHEVFNHREVNYIDKIKKYVGEK 238 (351)
T ss_dssp TSCCCTTCEEEEETCSSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHH----HTTCSEEEETTSTTHHHHHHHHHCTT
T ss_pred hhCCCCcCEEEEECCCChHHHHHHHHHHHC--CCEEEEEeCChhHHHHHH----HcCCCEEEeCCCchHHHHHHHHcCCC
Confidence 356789999999997 3455556666653 358999999999887553 45655311111111111 1111 123
Q ss_pred CCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 406 ~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
.+|+|+- |.| . ..+..+++.|++||+++...
T Consensus 239 ~~D~vi~---~~G--~------------------------~~~~~~~~~l~~~G~iv~~g 269 (351)
T 1yb5_A 239 GIDIIIE---MLA--N------------------------VNLSKDLSLLSHGGRVIVVG 269 (351)
T ss_dssp CEEEEEE---SCH--H------------------------HHHHHHHHHEEEEEEEEECC
T ss_pred CcEEEEE---CCC--h------------------------HHHHHHHHhccCCCEEEEEe
Confidence 6898875 222 0 12566788999999988543
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=91.79 E-value=2.2 Score=41.12 Aligned_cols=122 Identities=16% Similarity=0.068 Sum_probs=74.5
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcC-ChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------C
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDI-NKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------S 403 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~-s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~ 403 (528)
.|.+||=.|++ |+.+..+++.+- .+.+|+.++. +...++.+.+.++..|.. +.++.+|+.+.... .
T Consensus 30 ~gk~~lVTGas-~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~Dv~d~~~v~~~~~~~~~~ 106 (271)
T 3v2g_A 30 AGKTAFVTGGS-RGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQAGGR--AVAIRADNRDAEAIEQAIRETVEA 106 (271)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCC--EEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCc--EEEEECCCCCHHHHHHHHHHHHHH
Confidence 46788888876 566766666543 3457888755 457777777777766643 77888998764321 0
Q ss_pred CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHH----HHHHHHHHHHHhccCcCCCEEEEEcC
Q 009708 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEEL----KILQDELLDAASLLVKPGGVLVYSTC 466 (528)
Q Consensus 404 ~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l----~~~q~~lL~~a~~~LkpGG~LvysTc 466 (528)
.+..|.++.++-....+.+... +.++.... ..-...+++.+...++++|.+|+.+.
T Consensus 107 ~g~iD~lvnnAg~~~~~~~~~~-------~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS 166 (271)
T 3v2g_A 107 LGGLDILVNSAGIWHSAPLEET-------TVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGS 166 (271)
T ss_dssp HSCCCEEEECCCCCCCCCGGGC-------CHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred cCCCcEEEECCCCCCCCChhhC-------CHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 2478999987654433332222 22332221 12233467777888888998887644
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=91.79 E-value=0.19 Score=50.84 Aligned_cols=99 Identities=12% Similarity=0.098 Sum_probs=58.8
Q ss_pred cCCCCC------CeEEEeCCcc-chHH-HHHH-HHcCCCcEEEEEcCChH---HHHHHHHHHHHcCCCccEEEEcCcccc
Q 009708 331 VDPQPG------QSIVDCCAAP-GGKT-LYMA-SCLSGQGLVYAIDINKG---RLRILNETAKLHQVNSVIRTIHADLRT 398 (528)
Q Consensus 331 l~~~~g------~~VLDl~aG~-G~kt-~~la-~~~~~~~~v~avD~s~~---~l~~~~~n~~~~g~~~~i~~~~~D~~~ 398 (528)
..+++| ++||-.|+|+ |..+ +++| +.+ +..+|+++|.+++ +++.++ .+|.+. +.....|..+
T Consensus 162 ~~~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~-Ga~~Vi~~~~~~~~~~~~~~~~----~lGa~~-v~~~~~~~~~ 235 (357)
T 2b5w_A 162 AYASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDK-GYENLYCLGRRDRPDPTIDIIE----ELDATY-VDSRQTPVED 235 (357)
T ss_dssp HHHTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTT-CCCEEEEEECCCSSCHHHHHHH----HTTCEE-EETTTSCGGG
T ss_pred cCCCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHc-CCcEEEEEeCCcccHHHHHHHH----HcCCcc-cCCCccCHHH
Confidence 456788 9999999843 3444 5555 432 2234999999998 887764 467643 2111112222
Q ss_pred ccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 399 FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 399 ~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
+... .+.||+||- |+|.. ..+..++++|++||+++..
T Consensus 236 i~~~-~gg~Dvvid---~~g~~-------------------------~~~~~~~~~l~~~G~iv~~ 272 (357)
T 2b5w_A 236 VPDV-YEQMDFIYE---ATGFP-------------------------KHAIQSVQALAPNGVGALL 272 (357)
T ss_dssp HHHH-SCCEEEEEE---CSCCH-------------------------HHHHHHHHHEEEEEEEEEC
T ss_pred HHHh-CCCCCEEEE---CCCCh-------------------------HHHHHHHHHHhcCCEEEEE
Confidence 1111 236898874 33311 1367788899999998854
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=91.77 E-value=1.9 Score=40.44 Aligned_cols=82 Identities=11% Similarity=0.091 Sum_probs=57.5
Q ss_pred CCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 405 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~~ 405 (528)
+.+||=.|+ +|+.+.++++.+- .+.+|+.++.++..++.+.+.++..+.. +.++..|+.+.... ..+
T Consensus 5 ~k~vlITGa-s~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (247)
T 3lyl_A 5 EKVALVTGA-SRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEKGFK--ARGLVLNISDIESIQNFFAEIKAENL 81 (247)
T ss_dssp TCEEEESSC-SSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTCC--EEEEECCTTCHHHHHHHHHHHHHTTC
T ss_pred CCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCc--eEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 557777775 4667776666543 3468999999999999888888777643 78889998764311 124
Q ss_pred CCCEEEEcCCCCCCc
Q 009708 406 KCDKVLLDAPCSGLG 420 (528)
Q Consensus 406 ~fD~Vl~D~Pcsg~G 420 (528)
..|.++.++-....+
T Consensus 82 ~id~li~~Ag~~~~~ 96 (247)
T 3lyl_A 82 AIDILVNNAGITRDN 96 (247)
T ss_dssp CCSEEEECCCCCCCC
T ss_pred CCCEEEECCCCCCCC
Confidence 689999876554333
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=91.61 E-value=2.1 Score=40.94 Aligned_cols=124 Identities=12% Similarity=0.045 Sum_probs=71.9
Q ss_pred CCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHH-cCCCccEEEEcCcccccccc---------CC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKL-HQVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~-~g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
|.+||=.|++ |+.+.++++.+- .+.+|+.+|.++..++.+.+.+.. .+-. .+.++.+|+.+.... ..
T Consensus 8 ~k~~lVTGas-~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~~ 85 (265)
T 3lf2_A 8 EAVAVVTGGS-SGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGA-RLFASVCDVLDALQVRAFAEACERTL 85 (265)
T ss_dssp TCEEEEETCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTC-CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCc-eEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 6678877766 556666665542 346899999999999888777766 4333 378888998774321 02
Q ss_pred CCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcC--CCEEEEE
Q 009708 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKP--GGVLVYS 464 (528)
Q Consensus 405 ~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~Lkp--GG~Lvys 464 (528)
+..|.++.++-....+.+...+.-.|. ..+.....-...+++.+...++. +|.+|+.
T Consensus 86 g~id~lvnnAg~~~~~~~~~~~~~~~~---~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~i 144 (265)
T 3lf2_A 86 GCASILVNNAGQGRVSTFAETTDEAWS---EELQLKFFSVIHPVRAFLPQLESRADAAIVCV 144 (265)
T ss_dssp CSCSEEEECCCCCCCBCTTTCCHHHHH---HHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEE
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHH---HHHHHHHHHHHHHHHHHHHHhhccCCeEEEEE
Confidence 468999987755443333222222221 11111122223345555555543 5666654
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=91.58 E-value=1.9 Score=41.22 Aligned_cols=78 Identities=13% Similarity=0.019 Sum_probs=55.6
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
.|.+||=.|++. +.+.+++..+- .+.+|+.+|.++..++.+.+.+...+. .+.++.+|+.+.... ..
T Consensus 10 ~~k~vlVTGas~-gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~~~ 86 (264)
T 3ucx_A 10 TDKVVVISGVGP-ALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDTGR--RALSVGTDITDDAQVAHLVDETMKAY 86 (264)
T ss_dssp TTCEEEEESCCT-THHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCc-HHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 467888888764 55665555442 356899999999999988888877664 378889998874321 12
Q ss_pred CCCCEEEEcCC
Q 009708 405 VKCDKVLLDAP 415 (528)
Q Consensus 405 ~~fD~Vl~D~P 415 (528)
+..|.++.++-
T Consensus 87 g~id~lv~nAg 97 (264)
T 3ucx_A 87 GRVDVVINNAF 97 (264)
T ss_dssp SCCSEEEECCC
T ss_pred CCCcEEEECCC
Confidence 47899998763
|
| >2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus} | Back alignment and structure |
|---|
Probab=91.51 E-value=0.17 Score=49.34 Aligned_cols=78 Identities=19% Similarity=0.201 Sum_probs=43.6
Q ss_pred cCccccccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchh
Q 009708 393 HADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEE 472 (528)
Q Consensus 393 ~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~E 472 (528)
..|+..... .+++|+|++|.....+|. +|. .- .++...++. +++.|..+|+|||.+|.-.--.-...
T Consensus 195 ~lDfg~p~~--~~k~DvV~SDMApn~sGh-------~yq-QC--~DHarii~L-al~fA~~vLkPGGtfV~KvyggaDr~ 261 (320)
T 2hwk_A 195 RLDLGIPGD--VPKYDIIFVNVRTPYKYH-------HYQ-QC--EDHAIKLSM-LTKKACLHLNPGGTCVSIGYGYADRA 261 (320)
T ss_dssp CGGGCSCTT--SCCEEEEEEECCCCCCSC-------HHH-HH--HHHHHHHHH-THHHHGGGEEEEEEEEEEECCCCSHH
T ss_pred ccccCCccc--cCcCCEEEEcCCCCCCCc-------ccc-cc--chHHHHHHH-HHHHHHHhcCCCceEEEEEecCCccc
Confidence 666655332 267999999955444443 000 00 222222333 89999999999999994433333223
Q ss_pred hHHHHHHHHhhC
Q 009708 473 NEERVEAFLLRH 484 (528)
Q Consensus 473 ne~~v~~~l~~~ 484 (528)
.+ .+...|++.
T Consensus 262 se-~lv~~LaR~ 272 (320)
T 2hwk_A 262 SE-SIIGAIARQ 272 (320)
T ss_dssp HH-HHHHHHHTT
T ss_pred HH-HHHHHHHHh
Confidence 34 444555543
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=91.26 E-value=0.23 Score=49.34 Aligned_cols=95 Identities=16% Similarity=0.175 Sum_probs=60.3
Q ss_pred CCCC--CCeEEEeCC--ccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCC
Q 009708 332 DPQP--GQSIVDCCA--APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC 407 (528)
Q Consensus 332 ~~~~--g~~VLDl~a--G~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~f 407 (528)
.+++ |+ ||=.|| +.|..++++|+.++ .+|++++.++++++.+++ +|.+..+. ..|...........+
T Consensus 142 ~~~~~~g~-VlV~Ga~G~vG~~aiqla~~~G--a~Vi~~~~~~~~~~~~~~----lGa~~vi~--~~~~~~~~~~~~~~~ 212 (324)
T 3nx4_A 142 GIRPQDGE-VVVTGASGGVGSTAVALLHKLG--YQVAAVSGRESTHGYLKS----LGANRILS--RDEFAESRPLEKQLW 212 (324)
T ss_dssp TCCGGGCC-EEESSTTSHHHHHHHHHHHHTT--CCEEEEESCGGGHHHHHH----HTCSEEEE--GGGSSCCCSSCCCCE
T ss_pred ccCCCCCe-EEEECCCcHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHh----cCCCEEEe--cCCHHHHHhhcCCCc
Confidence 3444 45 888876 45777788888753 489999999999988754 67664221 122111111113468
Q ss_pred CEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 408 DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 408 D~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
|.|+ | |+| . ..+..+++.|+++|+++..
T Consensus 213 d~v~-d--~~g--~------------------------~~~~~~~~~l~~~G~iv~~ 240 (324)
T 3nx4_A 213 AGAI-D--TVG--D------------------------KVLAKVLAQMNYGGCVAAC 240 (324)
T ss_dssp EEEE-E--SSC--H------------------------HHHHHHHHTEEEEEEEEEC
T ss_pred cEEE-E--CCC--c------------------------HHHHHHHHHHhcCCEEEEE
Confidence 8776 4 332 1 1377889999999999854
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=91.25 E-value=2.1 Score=40.85 Aligned_cols=79 Identities=19% Similarity=0.116 Sum_probs=56.8
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
.|.+||=.|++ |+.+.+++..+- .+.+|+.++.++..++.+.+.+...+. .+.++.+|+.+.... ..
T Consensus 28 ~~k~vlITGas-~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~v~~~~~~~~~~~ 104 (262)
T 3rkr_A 28 SGQVAVVTGAS-RGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAAGG--EAESHACDLSHSDAIAAFATGVLAAH 104 (262)
T ss_dssp TTCEEEESSTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--EEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCC-ChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhCC--ceeEEEecCCCHHHHHHHHHHHHHhc
Confidence 46678877764 677777776552 346899999999999988888877653 378889998764321 02
Q ss_pred CCCCEEEEcCCC
Q 009708 405 VKCDKVLLDAPC 416 (528)
Q Consensus 405 ~~fD~Vl~D~Pc 416 (528)
+..|.|+.++-.
T Consensus 105 g~id~lv~~Ag~ 116 (262)
T 3rkr_A 105 GRCDVLVNNAGV 116 (262)
T ss_dssp SCCSEEEECCCC
T ss_pred CCCCEEEECCCc
Confidence 468999987654
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=91.20 E-value=2.5 Score=41.23 Aligned_cols=122 Identities=10% Similarity=-0.036 Sum_probs=74.5
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCC--hHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDIN--KGRLRILNETAKLHQVNSVIRTIHADLRTFADN--------- 402 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s--~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~--------- 402 (528)
.|.+||=.|++ |+.+.++++.+- .+.+|+.++.+ ....+.+.+.++..|. .+.++.+|+.+....
T Consensus 48 ~~k~vlVTGas-~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~ 124 (294)
T 3r3s_A 48 KDRKALVTGGD-SGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEECGR--KAVLLPGDLSDESFARSLVHKARE 124 (294)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHTTC--CEEECCCCTTSHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHcCC--cEEEEEecCCCHHHHHHHHHHHHH
Confidence 36688888865 667777776543 34588888886 4556666666666664 378889998764311
Q ss_pred CCCCCCEEEEcCCCCC-CccccCCchhhccCCHHHHHH----HHHHHHHHHHHHhccCcCCCEEEEEcC
Q 009708 403 STVKCDKVLLDAPCSG-LGVLSKRADLRWNRRLEDMEE----LKILQDELLDAASLLVKPGGVLVYSTC 466 (528)
Q Consensus 403 ~~~~fD~Vl~D~Pcsg-~G~~~~~pd~~~~~~~~~~~~----l~~~q~~lL~~a~~~LkpGG~LvysTc 466 (528)
..+..|.++.++-... .+.+.. .+.++... ...-...+++.+...++.+|.+|+.+.
T Consensus 125 ~~g~iD~lv~nAg~~~~~~~~~~-------~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS 186 (294)
T 3r3s_A 125 ALGGLDILALVAGKQTAIPEIKD-------LTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSS 186 (294)
T ss_dssp HHTCCCEEEECCCCCCCCSSGGG-------CCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECC
T ss_pred HcCCCCEEEECCCCcCCCCCccc-------CCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECC
Confidence 0247899998765422 121111 22222222 222334567888888888999887543
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=91.19 E-value=0.18 Score=52.99 Aligned_cols=51 Identities=10% Similarity=0.017 Sum_probs=38.6
Q ss_pred cCCCCCCeEEEeCC--ccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCc
Q 009708 331 VDPQPGQSIVDCCA--APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS 387 (528)
Q Consensus 331 l~~~~g~~VLDl~a--G~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~ 387 (528)
..+++|++||=.|+ |.|..++++|+.+ +.++++++.++.+++.++ .+|.+.
T Consensus 224 ~~~~~g~~VlV~GasG~vG~~avqlak~~--Ga~vi~~~~~~~~~~~~~----~lGa~~ 276 (456)
T 3krt_A 224 AGMKQGDNVLIWGASGGLGSYATQFALAG--GANPICVVSSPQKAEICR----AMGAEA 276 (456)
T ss_dssp TCCCTTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHH----HHTCCE
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHc--CCeEEEEECCHHHHHHHH----hhCCcE
Confidence 46789999999987 3466777777764 358999999999988774 467664
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=91.14 E-value=0.67 Score=44.27 Aligned_cols=126 Identities=10% Similarity=-0.050 Sum_probs=75.1
Q ss_pred CCCCeEEEeCCc-cchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------
Q 009708 334 QPGQSIVDCCAA-PGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN--------- 402 (528)
Q Consensus 334 ~~g~~VLDl~aG-~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~--------- 402 (528)
..+.+||=.|++ +|+.+.++++.+- .+.+|+.++.+....+.+++..+..+ .+.++.+|+.+....
T Consensus 12 ~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dv~~~~~v~~~~~~~~~ 88 (271)
T 3ek2_A 12 LDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFG---SELVFPCDVADDAQIDALFASLKT 88 (271)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTT---CCCEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhHHHHHHHHHHcC---CcEEEECCCCCHHHHHHHHHHHHH
Confidence 357789988874 4777777776542 34689999998776666666666554 256788898774321
Q ss_pred CCCCCCEEEEcCCCCCCccccCCchhhcc-CCHHHHHHHH----HHHHHHHHHHhccCcCCCEEEEEc
Q 009708 403 STVKCDKVLLDAPCSGLGVLSKRADLRWN-RRLEDMEELK----ILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 403 ~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~-~~~~~~~~l~----~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
..+..|.++.++-....+.+... .+. .+.++..... .-...+++.+...++++|.+|+.+
T Consensus 89 ~~g~id~lv~nAg~~~~~~~~~~---~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~is 153 (271)
T 3ek2_A 89 HWDSLDGLVHSIGFAPREAIAGD---FLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLS 153 (271)
T ss_dssp HCSCEEEEEECCCCCCGGGGSSC---TTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred HcCCCCEEEECCccCccccccCc---cccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEe
Confidence 12468999987654332100000 011 2333333322 223456777778887788877654
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=91.08 E-value=2.1 Score=40.40 Aligned_cols=79 Identities=15% Similarity=0.083 Sum_probs=54.8
Q ss_pred CCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 405 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~~ 405 (528)
|.++|=.|++ |+.+..++..+- .+.+|+.++.++..++.+.+.++..+. .+.++.+|+.+.... ..+
T Consensus 7 ~k~~lVTGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dv~~~~~~~~~~~~~~~~~g 83 (247)
T 2jah_A 7 GKVALITGAS-SGIGEATARALAAEGAAVAIAARRVEKLRALGDELTAAGA--KVHVLELDVADRQGVDAAVASTVEALG 83 (247)
T ss_dssp TCEEEEESCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 5678877765 667777766543 345899999999988887777766553 377888998764321 014
Q ss_pred CCCEEEEcCCCC
Q 009708 406 KCDKVLLDAPCS 417 (528)
Q Consensus 406 ~fD~Vl~D~Pcs 417 (528)
..|.++.++-..
T Consensus 84 ~id~lv~nAg~~ 95 (247)
T 2jah_A 84 GLDILVNNAGIM 95 (247)
T ss_dssp CCSEEEECCCCC
T ss_pred CCCEEEECCCCC
Confidence 689999876543
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=91.05 E-value=2.3 Score=40.95 Aligned_cols=81 Identities=15% Similarity=0.047 Sum_probs=56.8
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCC-ccEEEEcCcccccccc---------C
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVN-SVIRTIHADLRTFADN---------S 403 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~-~~i~~~~~D~~~~~~~---------~ 403 (528)
.|.+||=.|++ |+.+.++++.+- .+.+|+.+|.++..++.+.+.++..+.. ..+.++.+|+.+.... .
T Consensus 10 ~~k~vlVTGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 88 (281)
T 3svt_A 10 QDRTYLVTGGG-SGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAVTAW 88 (281)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 36678877765 566776666542 3568999999999998888888776542 2578889998874321 0
Q ss_pred CCCCCEEEEcCCC
Q 009708 404 TVKCDKVLLDAPC 416 (528)
Q Consensus 404 ~~~fD~Vl~D~Pc 416 (528)
.+..|.++.++-.
T Consensus 89 ~g~id~lv~nAg~ 101 (281)
T 3svt_A 89 HGRLHGVVHCAGG 101 (281)
T ss_dssp HSCCCEEEECCCC
T ss_pred cCCCCEEEECCCc
Confidence 2468999987654
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=91.03 E-value=1.7 Score=41.92 Aligned_cols=79 Identities=15% Similarity=0.164 Sum_probs=57.4
Q ss_pred CCCeEEEeCCccchHHHHHHHHc-CCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCL-SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~-~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
.|.++|=-|++.| .+..+|..+ ..+.+|+.+|.+++.++.+.+.++..|.+ +.++.+|+.+.... ..
T Consensus 6 ~gKvalVTGas~G-IG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g~~--~~~~~~Dvt~~~~v~~~~~~~~~~~ 82 (254)
T 4fn4_A 6 KNKVVIVTGAGSG-IGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMGKE--VLGVKADVSKKKDVEEFVRRTFETY 82 (254)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCC--EEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCc--EEEEEccCCCHHHHHHHHHHHHHHc
Confidence 3778888887665 565555544 24579999999999999999988888754 77889999874321 12
Q ss_pred CCCCEEEEcCCC
Q 009708 405 VKCDKVLLDAPC 416 (528)
Q Consensus 405 ~~fD~Vl~D~Pc 416 (528)
++.|.++.++-.
T Consensus 83 G~iDiLVNNAGi 94 (254)
T 4fn4_A 83 SRIDVLCNNAGI 94 (254)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCCEEEECCcc
Confidence 578998887643
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=90.94 E-value=1.5 Score=42.36 Aligned_cols=83 Identities=11% Similarity=-0.030 Sum_probs=57.1
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
.+.+||=.|+ +|+.+..++..+- .+.+|+.++.++..++.+...++..+.. +.++..|+.+.... ..
T Consensus 27 ~~k~~lVTGa-s~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~Dv~d~~~v~~~~~~~~~~~ 103 (270)
T 3ftp_A 27 DKQVAIVTGA-SRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQAGLE--GRGAVLNVNDATAVDALVESTLKEF 103 (270)
T ss_dssp TTCEEEETTC-SSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTCC--CEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCc--EEEEEEeCCCHHHHHHHHHHHHHHc
Confidence 3667776665 4667776666542 3468999999999998888888777654 56788888764321 01
Q ss_pred CCCCEEEEcCCCCCCc
Q 009708 405 VKCDKVLLDAPCSGLG 420 (528)
Q Consensus 405 ~~fD~Vl~D~Pcsg~G 420 (528)
+..|.++.++-....+
T Consensus 104 g~iD~lvnnAg~~~~~ 119 (270)
T 3ftp_A 104 GALNVLVNNAGITQDQ 119 (270)
T ss_dssp SCCCEEEECCCCCCCB
T ss_pred CCCCEEEECCCCCCCC
Confidence 4689999877554433
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=90.76 E-value=1.3 Score=43.22 Aligned_cols=122 Identities=16% Similarity=0.070 Sum_probs=74.1
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
.|.++|=-|++.| .+..+|..+- .+.+|+.+|.+++.++.+.+ ..|-. +..+.+|+.+.... ..
T Consensus 28 ~gKvalVTGas~G-IG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~---~~g~~--~~~~~~Dv~~~~~v~~~~~~~~~~~ 101 (273)
T 4fgs_A 28 NAKIAVITGATSG-IGLAAAKRFVAEGARVFITGRRKDVLDAAIA---EIGGG--AVGIQADSANLAELDRLYEKVKAEA 101 (273)
T ss_dssp TTCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH---HHCTT--CEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH---HcCCC--eEEEEecCCCHHHHHHHHHHHHHHc
Confidence 4778888887665 5655555442 35699999999988876544 33433 56788898764321 12
Q ss_pred CCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 405 ~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
++.|.++.++-....+.+...++-.|.. -+.-...-...+.+.+..+++.+|.+|..+
T Consensus 102 G~iDiLVNNAG~~~~~~~~~~~~e~w~~---~~~vNl~g~~~~~~~~~p~m~~~G~IInis 159 (273)
T 4fgs_A 102 GRIDVLFVNAGGGSMLPLGEVTEEQYDD---TFDRNVKGVLFTVQKALPLLARGSSVVLTG 159 (273)
T ss_dssp SCEEEEEECCCCCCCCCTTSCCHHHHHH---HHHHHTHHHHHHHHHHTTTEEEEEEEEEEC
T ss_pred CCCCEEEECCCCCCCCChhhccHHHHHH---HHHHHhHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 5789888877554434333333333431 111112223346778888888888877553
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=90.75 E-value=0.3 Score=49.27 Aligned_cols=103 Identities=14% Similarity=0.093 Sum_probs=60.7
Q ss_pred HhcCCCCC--CeEEEeCC--ccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccc-cccC
Q 009708 329 AVVDPQPG--QSIVDCCA--APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF-ADNS 403 (528)
Q Consensus 329 ~~l~~~~g--~~VLDl~a--G~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~-~~~~ 403 (528)
...++++| ++||-.|+ |.|..+++++... +.++|+++|.++++++.+++ .+|.+..+.....|.... ....
T Consensus 152 ~~~~~~~g~~~~vlI~GasggiG~~~~~~a~~~-Ga~~Vi~~~~~~~~~~~~~~---~~g~~~~~d~~~~~~~~~~~~~~ 227 (357)
T 2zb4_A 152 EKGHITAGSNKTMVVSGAAGACGSVAGQIGHFL-GCSRVVGICGTHEKCILLTS---ELGFDAAINYKKDNVAEQLRESC 227 (357)
T ss_dssp HHSCCCTTSCCEEEESSTTBHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHHH---TSCCSEEEETTTSCHHHHHHHHC
T ss_pred HhcCCCCCCccEEEEECCCcHHHHHHHHHHHHC-CCCeEEEEeCCHHHHHHHHH---HcCCceEEecCchHHHHHHHHhc
Confidence 44578889 99999997 3344445555543 22389999999988876643 256542111111111111 1111
Q ss_pred CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 404 ~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
.+.+|+|+- |.|. ..+..++++|++||+++..
T Consensus 228 ~~~~d~vi~---~~G~--------------------------~~~~~~~~~l~~~G~iv~~ 259 (357)
T 2zb4_A 228 PAGVDVYFD---NVGG--------------------------NISDTVISQMNENSHIILC 259 (357)
T ss_dssp TTCEEEEEE---SCCH--------------------------HHHHHHHHTEEEEEEEEEC
T ss_pred CCCCCEEEE---CCCH--------------------------HHHHHHHHHhccCcEEEEE
Confidence 226898875 3331 1367788999999998853
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=90.73 E-value=0.29 Score=49.24 Aligned_cols=97 Identities=21% Similarity=0.147 Sum_probs=61.3
Q ss_pred hcCCCCCCeEEEeCC-c-cchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc--CCC
Q 009708 330 VVDPQPGQSIVDCCA-A-PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN--STV 405 (528)
Q Consensus 330 ~l~~~~g~~VLDl~a-G-~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~--~~~ 405 (528)
...+++|++||-.|| | .|..++++++.. +.+|+++ .++.+++.++ .+|.+. +. ...|....... ...
T Consensus 145 ~~~~~~g~~VlV~Ga~g~iG~~~~q~a~~~--Ga~Vi~~-~~~~~~~~~~----~lGa~~-i~-~~~~~~~~~~~~~~~~ 215 (343)
T 3gaz_A 145 RAQVQDGQTVLIQGGGGGVGHVAIQIALAR--GARVFAT-ARGSDLEYVR----DLGATP-ID-ASREPEDYAAEHTAGQ 215 (343)
T ss_dssp TTCCCTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEE-ECHHHHHHHH----HHTSEE-EE-TTSCHHHHHHHHHTTS
T ss_pred hcCCCCCCEEEEecCCCHHHHHHHHHHHHC--CCEEEEE-eCHHHHHHHH----HcCCCE-ec-cCCCHHHHHHHHhcCC
Confidence 456789999999984 3 466677777764 3589999 8988877654 457653 32 12222211111 134
Q ss_pred CCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 406 ~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
.+|+|+- |.|.. .+..++..|++||+++..
T Consensus 216 g~D~vid---~~g~~--------------------------~~~~~~~~l~~~G~iv~~ 245 (343)
T 3gaz_A 216 GFDLVYD---TLGGP--------------------------VLDASFSAVKRFGHVVSC 245 (343)
T ss_dssp CEEEEEE---SSCTH--------------------------HHHHHHHHEEEEEEEEES
T ss_pred CceEEEE---CCCcH--------------------------HHHHHHHHHhcCCeEEEE
Confidence 6998874 43311 267788899999998853
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=90.71 E-value=0.21 Score=49.72 Aligned_cols=99 Identities=19% Similarity=0.077 Sum_probs=60.5
Q ss_pred cCCCCCC-eEEEeCC--ccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCC
Q 009708 331 VDPQPGQ-SIVDCCA--APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC 407 (528)
Q Consensus 331 l~~~~g~-~VLDl~a--G~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~f 407 (528)
.++++|+ +||=.|| |.|..++++|+.++ .+|++++.++++++.+++ +|.+..+.....|...........+
T Consensus 145 ~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~G--a~vi~~~~~~~~~~~~~~----lGa~~v~~~~~~~~~~~~~~~~~~~ 218 (330)
T 1tt7_A 145 NGLSPEKGSVLVTGATGGVGGIAVSMLNKRG--YDVVASTGNREAADYLKQ----LGASEVISREDVYDGTLKALSKQQW 218 (330)
T ss_dssp TTCCGGGCCEEEESTTSHHHHHHHHHHHHHT--CCEEEEESSSSTHHHHHH----HTCSEEEEHHHHCSSCCCSSCCCCE
T ss_pred cCcCCCCceEEEECCCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH----cCCcEEEECCCchHHHHHHhhcCCc
Confidence 3567785 8999997 44566677777653 579999999888877653 5765322111111000111112468
Q ss_pred CEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 408 DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 408 D~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
|+|+- |+|.. .+..+++.+++||+++..
T Consensus 219 d~vid---~~g~~--------------------------~~~~~~~~l~~~G~iv~~ 246 (330)
T 1tt7_A 219 QGAVD---PVGGK--------------------------QLASLLSKIQYGGSVAVS 246 (330)
T ss_dssp EEEEE---SCCTH--------------------------HHHHHHTTEEEEEEEEEC
T ss_pred cEEEE---CCcHH--------------------------HHHHHHHhhcCCCEEEEE
Confidence 88764 33310 267788999999998854
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=90.67 E-value=2.3 Score=40.59 Aligned_cols=82 Identities=13% Similarity=0.038 Sum_probs=56.9
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
.|.+||=.|++ |+.+.+++..+- .+.+|+.++.++..++.+.+.++..+-. .+.++.+|+.+.... ..
T Consensus 9 ~~k~vlVTGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~~ 86 (262)
T 3pk0_A 9 QGRSVVVTGGT-KGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLGSG-KVIGVQTDVSDRAQCDALAGRAVEEF 86 (262)
T ss_dssp TTCEEEETTCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTSSS-CEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCC-cEEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 36677777755 667777766542 3458999999999998888877766533 478899998874321 01
Q ss_pred CCCCEEEEcCCCCC
Q 009708 405 VKCDKVLLDAPCSG 418 (528)
Q Consensus 405 ~~fD~Vl~D~Pcsg 418 (528)
+..|.++.++-...
T Consensus 87 g~id~lvnnAg~~~ 100 (262)
T 3pk0_A 87 GGIDVVCANAGVFP 100 (262)
T ss_dssp SCCSEEEECCCCCC
T ss_pred CCCCEEEECCCCCC
Confidence 47899998765443
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=90.64 E-value=1.9 Score=41.37 Aligned_cols=80 Identities=15% Similarity=0.068 Sum_probs=55.1
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc----------C
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN----------S 403 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~----------~ 403 (528)
.|.+||=.|+ +|+.+.+++..+- .+.+|+.++.++..++.+.+.++..+. .+.++.+|+.+.... .
T Consensus 20 ~~k~vlVTGa-s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~ 96 (273)
T 1ae1_A 20 KGTTALVTGG-SKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGL--NVEGSVCDLLSRTERDKLMQTVAHVF 96 (273)
T ss_dssp TTCEEEEESC-SSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEECC-cchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--ceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 3667887776 4667777766543 346899999999888877766666553 377888998764321 1
Q ss_pred CCCCCEEEEcCCCC
Q 009708 404 TVKCDKVLLDAPCS 417 (528)
Q Consensus 404 ~~~fD~Vl~D~Pcs 417 (528)
.+..|.++.++-..
T Consensus 97 ~g~id~lv~nAg~~ 110 (273)
T 1ae1_A 97 DGKLNILVNNAGVV 110 (273)
T ss_dssp TSCCCEEEECCCCC
T ss_pred CCCCcEEEECCCCC
Confidence 15789999876543
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=90.63 E-value=1.4 Score=41.91 Aligned_cols=83 Identities=11% Similarity=0.033 Sum_probs=57.4
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
.|.+||=.|++ |+.+.++++.+- .+.+|+.+|.++..++.+.+.++..+. .+.++.+|+.+.... ..
T Consensus 11 ~~k~vlVTGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~~ 87 (256)
T 3gaf_A 11 NDAVAIVTGAA-AGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQAGG--KAIGLECNVTDEQHREAVIKAALDQF 87 (256)
T ss_dssp TTCEEEECSCS-SHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--cEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 36677777765 566666665442 246899999999999888888877664 378889998874321 01
Q ss_pred CCCCEEEEcCCCCCCc
Q 009708 405 VKCDKVLLDAPCSGLG 420 (528)
Q Consensus 405 ~~fD~Vl~D~Pcsg~G 420 (528)
+..|.++.++-....+
T Consensus 88 g~id~lv~nAg~~~~~ 103 (256)
T 3gaf_A 88 GKITVLVNNAGGGGPK 103 (256)
T ss_dssp SCCCEEEECCCCCCCC
T ss_pred CCCCEEEECCCCCCCC
Confidence 4789999877654433
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=90.62 E-value=1.7 Score=41.81 Aligned_cols=80 Identities=13% Similarity=0.015 Sum_probs=55.8
Q ss_pred CCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 405 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~~ 405 (528)
+.+||=.|++ ||.+..++..+- .+.+|+.++.++..++.+.+.++..+. .+.++.+|+.+.... ..+
T Consensus 4 ~k~~lVTGas-~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~~g 80 (264)
T 3tfo_A 4 DKVILITGAS-GGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDAGG--TALAQVLDVTDRHSVAAFAQAAVDTWG 80 (264)
T ss_dssp TCEEEESSTT-SHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTC--EEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCEEEEeCCc-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 5567777765 566776666542 356899999999999888888877653 377888898764321 024
Q ss_pred CCCEEEEcCCCCC
Q 009708 406 KCDKVLLDAPCSG 418 (528)
Q Consensus 406 ~fD~Vl~D~Pcsg 418 (528)
..|.++.++-...
T Consensus 81 ~iD~lVnnAG~~~ 93 (264)
T 3tfo_A 81 RIDVLVNNAGVMP 93 (264)
T ss_dssp CCCEEEECCCCCC
T ss_pred CCCEEEECCCCCC
Confidence 7899998765433
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=90.58 E-value=0.98 Score=43.05 Aligned_cols=83 Identities=12% Similarity=-0.041 Sum_probs=57.9
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC--------CC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS--------TV 405 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~--------~~ 405 (528)
.|.+||=.|++ ||.+..++..+- .+.+|+.+|.++..++.+.+.++..|. .+.++.+|+.+..... .+
T Consensus 6 ~~k~vlVTGas-~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~~g 82 (252)
T 3h7a_A 6 RNATVAVIGAG-DYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAGG--RIVARSLDARNEDEVTAFLNAADAHA 82 (252)
T ss_dssp CSCEEEEECCS-SHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTC--EEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--eEEEEECcCCCHHHHHHHHHHHHhhC
Confidence 35678877766 556666666542 346899999999999988888877653 4788999987743210 14
Q ss_pred CCCEEEEcCCCCCCc
Q 009708 406 KCDKVLLDAPCSGLG 420 (528)
Q Consensus 406 ~fD~Vl~D~Pcsg~G 420 (528)
..|.++.++-....+
T Consensus 83 ~id~lv~nAg~~~~~ 97 (252)
T 3h7a_A 83 PLEVTIFNVGANVNF 97 (252)
T ss_dssp CEEEEEECCCCCCCC
T ss_pred CceEEEECCCcCCCC
Confidence 789999876654433
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=90.50 E-value=1.7 Score=41.86 Aligned_cols=81 Identities=21% Similarity=0.052 Sum_probs=55.4
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcC-------------ChHHHHHHHHHHHHcCCCccEEEEcCcccccc
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDI-------------NKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~-------------s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~ 400 (528)
.|.+||=.|++ |+.+.++++.+- .+.+|+.+|. ++..++.+.+.++..|. .+.++..|+.+..
T Consensus 14 ~gk~~lVTGas-~gIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~ 90 (280)
T 3pgx_A 14 QGRVAFITGAA-RGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQGR--KALTRVLDVRDDA 90 (280)
T ss_dssp TTCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTC--CEEEEECCTTCHH
T ss_pred CCCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCC--eEEEEEcCCCCHH
Confidence 46778877776 566666666542 3568999998 77888887777776664 3778889987643
Q ss_pred cc---------CCCCCCEEEEcCCCCC
Q 009708 401 DN---------STVKCDKVLLDAPCSG 418 (528)
Q Consensus 401 ~~---------~~~~fD~Vl~D~Pcsg 418 (528)
.. ..+..|.++.++-...
T Consensus 91 ~v~~~~~~~~~~~g~id~lvnnAg~~~ 117 (280)
T 3pgx_A 91 ALRELVADGMEQFGRLDVVVANAGVLS 117 (280)
T ss_dssp HHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCCC
Confidence 21 0147899998765543
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=90.48 E-value=3.3 Score=39.66 Aligned_cols=80 Identities=18% Similarity=0.054 Sum_probs=55.9
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
.+.+||=.|+ +|+.+.+++..+- .+.+|+++|.++..++.+.+.++..+. .+.++.+|+.+.... ..
T Consensus 30 ~~k~vlITGa-sggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dl~~~~~v~~~~~~~~~~~ 106 (272)
T 1yb1_A 30 TGEIVLITGA-GHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGA--KVHTFVVDCSNREDIYSSAKKVKAEI 106 (272)
T ss_dssp TTCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHHhcCC--eEEEEEeeCCCHHHHHHHHHHHHHHC
Confidence 3567887775 4677877776553 346899999999988887777776553 378889998764211 12
Q ss_pred CCCCEEEEcCCCC
Q 009708 405 VKCDKVLLDAPCS 417 (528)
Q Consensus 405 ~~fD~Vl~D~Pcs 417 (528)
+.+|.|+.++-..
T Consensus 107 g~iD~li~~Ag~~ 119 (272)
T 1yb1_A 107 GDVSILVNNAGVV 119 (272)
T ss_dssp CCCSEEEECCCCC
T ss_pred CCCcEEEECCCcC
Confidence 4689999876543
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=90.40 E-value=0.2 Score=50.36 Aligned_cols=97 Identities=19% Similarity=0.209 Sum_probs=59.8
Q ss_pred hcCCCCCCeEEEeCCcc-chHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcC---ccccccc-cCC
Q 009708 330 VVDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA---DLRTFAD-NST 404 (528)
Q Consensus 330 ~l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~---D~~~~~~-~~~ 404 (528)
..++ +|++||-.|+|+ |..++++|+.++ ..+|+++|.++++++.+++ + .+. ++.. |...... ...
T Consensus 160 ~~~~-~g~~VlV~GaG~vG~~~~q~a~~~G-a~~Vi~~~~~~~~~~~~~~----l-a~~---v~~~~~~~~~~~~~~~~~ 229 (343)
T 2dq4_A 160 GSGV-SGKSVLITGAGPIGLMAAMVVRASG-AGPILVSDPNPYRLAFARP----Y-ADR---LVNPLEEDLLEVVRRVTG 229 (343)
T ss_dssp TTCC-TTSCEEEECCSHHHHHHHHHHHHTT-CCSEEEECSCHHHHGGGTT----T-CSE---EECTTTSCHHHHHHHHHS
T ss_pred hCCC-CCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHH----h-HHh---ccCcCccCHHHHHHHhcC
Confidence 4567 899999999854 555667776642 2379999999998877654 2 221 2221 2111110 013
Q ss_pred CCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 405 ~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
..+|+|+- |+|. ...+..+++.|++||+++..
T Consensus 230 ~g~D~vid---~~g~-------------------------~~~~~~~~~~l~~~G~iv~~ 261 (343)
T 2dq4_A 230 SGVEVLLE---FSGN-------------------------EAAIHQGLMALIPGGEARIL 261 (343)
T ss_dssp SCEEEEEE---CSCC-------------------------HHHHHHHHHHEEEEEEEEEC
T ss_pred CCCCEEEE---CCCC-------------------------HHHHHHHHHHHhcCCEEEEE
Confidence 46998874 3321 11367788889999998854
|
| >3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=90.36 E-value=1 Score=44.08 Aligned_cols=82 Identities=11% Similarity=-0.004 Sum_probs=56.1
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
.|.+||=.|++ |+++..+++.+- .+.+|+.+|.++..++.+.+.++..+.. .+.++.+|+.+.... ..
T Consensus 40 ~~k~vlVTGas-~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~ 117 (293)
T 3rih_A 40 SARSVLVTGGT-KGIGRGIATVFARAGANVAVAARSPRELSSVTAELGELGAG-NVIGVRLDVSDPGSCADAARTVVDAF 117 (293)
T ss_dssp TTCEEEETTTT-SHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHTTSSSS-CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCC-cEEEEEEeCCCHHHHHHHHHHHHHHc
Confidence 36677766654 667777666542 3468999999999888877777665533 478899999874321 12
Q ss_pred CCCCEEEEcCCCCC
Q 009708 405 VKCDKVLLDAPCSG 418 (528)
Q Consensus 405 ~~fD~Vl~D~Pcsg 418 (528)
+..|.++.++-...
T Consensus 118 g~iD~lvnnAg~~~ 131 (293)
T 3rih_A 118 GALDVVCANAGIFP 131 (293)
T ss_dssp SCCCEEEECCCCCC
T ss_pred CCCCEEEECCCCCC
Confidence 46899998765543
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=90.32 E-value=1.3 Score=42.81 Aligned_cols=83 Identities=12% Similarity=0.036 Sum_probs=57.8
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
.|.+||=.|++ |+.+.++++.+- .+.+|+.++.++..++.+.+.++..+.. +.++.+|+.+.... ..
T Consensus 31 ~gk~~lVTGas-~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~Dl~d~~~v~~~~~~~~~~~ 107 (276)
T 3r1i_A 31 SGKRALITGAS-TGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGVGGK--ALPIRCDVTQPDQVRGMLDQMTGEL 107 (276)
T ss_dssp TTCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCC--CEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCe--EEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 36678877766 566766666542 3468999999999998888888776643 67888998774321 01
Q ss_pred CCCCEEEEcCCCCCCc
Q 009708 405 VKCDKVLLDAPCSGLG 420 (528)
Q Consensus 405 ~~fD~Vl~D~Pcsg~G 420 (528)
+..|.++.++-....+
T Consensus 108 g~iD~lvnnAg~~~~~ 123 (276)
T 3r1i_A 108 GGIDIAVCNAGIVSVQ 123 (276)
T ss_dssp SCCSEEEECCCCCCCC
T ss_pred CCCCEEEECCCCCCCC
Confidence 4799999877554433
|
| >4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=90.26 E-value=2 Score=41.36 Aligned_cols=81 Identities=11% Similarity=0.073 Sum_probs=57.1
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
.|.+||=.|++ |+.+..+++.+- .+.+|+.+|.++..++.+.+.++..|.. +.++.+|+.+.... ..
T Consensus 25 ~gk~~lVTGas-~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~--~~~~~~Dv~d~~~v~~~~~~~~~~~ 101 (271)
T 4ibo_A 25 GGRTALVTGSS-RGLGRAMAEGLAVAGARILINGTDPSRVAQTVQEFRNVGHD--AEAVAFDVTSESEIIEAFARLDEQG 101 (271)
T ss_dssp TTCEEEETTCS-SHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCC--EEECCCCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCc--eEEEEcCCCCHHHHHHHHHHHHHHC
Confidence 36677777754 667777666542 3468999999999998888888776643 78889998874321 12
Q ss_pred CCCCEEEEcCCCCC
Q 009708 405 VKCDKVLLDAPCSG 418 (528)
Q Consensus 405 ~~fD~Vl~D~Pcsg 418 (528)
+..|.++.++-...
T Consensus 102 g~iD~lv~nAg~~~ 115 (271)
T 4ibo_A 102 IDVDILVNNAGIQF 115 (271)
T ss_dssp CCCCEEEECCCCCC
T ss_pred CCCCEEEECCCCCC
Confidence 47899998765543
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} | Back alignment and structure |
|---|
Probab=90.18 E-value=2.1 Score=40.88 Aligned_cols=122 Identities=9% Similarity=-0.007 Sum_probs=73.5
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCC-CcEEEEEcCC---hHHHHHHHHHHHHcCCCccEEEEcCcccccccc--------
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDIN---KGRLRILNETAKLHQVNSVIRTIHADLRTFADN-------- 402 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~-~~~v~avD~s---~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~-------- 402 (528)
.|.+||=.|++ ||.+..++..+-. +.+|+.++.+ ...++.+.+.++..|. .+.++.+|+.+....
T Consensus 10 ~~k~vlVTGas-~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~ 86 (262)
T 3ksu_A 10 KNKVIVIAGGI-KNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQGA--KVALYQSDLSNEEEVAKLFDFAE 86 (262)
T ss_dssp TTCEEEEETCS-SHHHHHHHHHHTTSSCEEEEEESCGGGHHHHHHHHHHHHTTTC--EEEEEECCCCSHHHHHHHHHHHH
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEecCccCHHHHHHHHHHHHhcCC--cEEEEECCCCCHHHHHHHHHHHH
Confidence 36678877766 5677777776643 4578887654 4456655555555443 478889998774321
Q ss_pred -CCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHH----HHHHHHHHHHHHhccCcCCCEEEEEcC
Q 009708 403 -STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEE----LKILQDELLDAASLLVKPGGVLVYSTC 466 (528)
Q Consensus 403 -~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~----l~~~q~~lL~~a~~~LkpGG~LvysTc 466 (528)
..+..|.++.++-....+.+.. .+.++... ...-...+++.+...++++|.+|+.+.
T Consensus 87 ~~~g~iD~lvnnAg~~~~~~~~~-------~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~isS 148 (262)
T 3ksu_A 87 KEFGKVDIAINTVGKVLKKPIVE-------TSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIAT 148 (262)
T ss_dssp HHHCSEEEEEECCCCCCSSCGGG-------CCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECC
T ss_pred HHcCCCCEEEECCCCCCCCCccc-------CCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEec
Confidence 0146899998765433332222 22233322 222334567777888888898887644
|
| >1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A | Back alignment and structure |
|---|
Probab=90.15 E-value=0.91 Score=45.71 Aligned_cols=56 Identities=14% Similarity=0.234 Sum_probs=34.7
Q ss_pred hcCCCCCCeEEEeCC--ccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCc
Q 009708 330 VVDPQPGQSIVDCCA--APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS 387 (528)
Q Consensus 330 ~l~~~~g~~VLDl~a--G~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~ 387 (528)
..++++|++||=.|+ |.|..++++|+.++ ...|..++.++..-+. .+.++.+|.+.
T Consensus 162 ~~~~~~g~~VlV~Ga~G~vG~~aiqlak~~G-a~vi~~~~~~~~~~~~-~~~~~~lGa~~ 219 (357)
T 1zsy_A 162 FEQLQPGDSVIQNASNSGVGQAVIQIAAALG-LRTINVVRDRPDIQKL-SDRLKSLGAEH 219 (357)
T ss_dssp SSCCCTTCEEEESSTTSHHHHHHHHHHHHHT-CEEEEEECCCSCHHHH-HHHHHHTTCSE
T ss_pred HhccCCCCEEEEeCCcCHHHHHHHHHHHHcC-CEEEEEecCccchHHH-HHHHHhcCCcE
Confidence 356889999999997 45667788888753 3345555655432211 12345678764
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=90.13 E-value=3.8 Score=39.79 Aligned_cols=122 Identities=11% Similarity=0.029 Sum_probs=73.3
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChH-HHHHHHHHHHHcCCCccEEEEcCcccccccc---------C
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKG-RLRILNETAKLHQVNSVIRTIHADLRTFADN---------S 403 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~-~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~ 403 (528)
.|.+||=.|++ |+.+.++++.+- .+.+|+.++.+.. ..+.+.+.++..+. .+.++.+|+.+.... .
T Consensus 46 ~gk~vlVTGas-~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~ 122 (291)
T 3ijr_A 46 KGKNVLITGGD-SGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEGV--KCVLLPGDLSDEQHCKDIVQETVRQ 122 (291)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTTC--CEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCC--cEEEEECCCCCHHHHHHHHHHHHHH
Confidence 36788888865 566776666543 3468999998865 44555555555553 378899998874321 0
Q ss_pred CCCCCEEEEcCCCCCC-ccccCCchhhccCCHHHHHH----HHHHHHHHHHHHhccCcCCCEEEEEcC
Q 009708 404 TVKCDKVLLDAPCSGL-GVLSKRADLRWNRRLEDMEE----LKILQDELLDAASLLVKPGGVLVYSTC 466 (528)
Q Consensus 404 ~~~fD~Vl~D~Pcsg~-G~~~~~pd~~~~~~~~~~~~----l~~~q~~lL~~a~~~LkpGG~LvysTc 466 (528)
.+..|.++.++-.... +.+.. .+.++... ...-...+++.+...++.+|.+|+.+.
T Consensus 123 ~g~iD~lvnnAg~~~~~~~~~~-------~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~isS 183 (291)
T 3ijr_A 123 LGSLNILVNNVAQQYPQQGLEY-------ITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTAS 183 (291)
T ss_dssp HSSCCEEEECCCCCCCCSSGGG-------CCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEECC
T ss_pred cCCCCEEEECCCCcCCCCCccc-------CCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEec
Confidence 2468999987643211 11111 12222222 222334567888888888998887643
|
| >3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=90.12 E-value=2.6 Score=41.57 Aligned_cols=84 Identities=21% Similarity=0.132 Sum_probs=55.7
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCC------------hHHHHHHHHHHHHcCCCccEEEEcCccccccc
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDIN------------KGRLRILNETAKLHQVNSVIRTIHADLRTFAD 401 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s------------~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~ 401 (528)
.|.+||=.|++ |+++..++..+- .+.+|+.+|.+ +..++.+.+.++..+. .+.++.+|+.+...
T Consensus 45 ~gk~~lVTGas-~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Dv~d~~~ 121 (317)
T 3oec_A 45 QGKVAFITGAA-RGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGR--RIIARQADVRDLAS 121 (317)
T ss_dssp TTCEEEESSCS-SHHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHH
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhcCC--eEEEEECCCCCHHH
Confidence 46677777765 566766665542 35689999886 6777777666666664 37888999876432
Q ss_pred c---------CCCCCCEEEEcCCCCCCcc
Q 009708 402 N---------STVKCDKVLLDAPCSGLGV 421 (528)
Q Consensus 402 ~---------~~~~fD~Vl~D~Pcsg~G~ 421 (528)
. ..+..|.++.++-....+.
T Consensus 122 v~~~~~~~~~~~g~iD~lVnnAg~~~~~~ 150 (317)
T 3oec_A 122 LQAVVDEALAEFGHIDILVSNVGISNQGE 150 (317)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCCBC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCCCC
Confidence 1 0147899998876544443
|
| >4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.08 E-value=0.25 Score=49.75 Aligned_cols=98 Identities=19% Similarity=0.172 Sum_probs=55.2
Q ss_pred hcCCCCCCeEEEeCCc--cchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccc-ccCCCC
Q 009708 330 VVDPQPGQSIVDCCAA--PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA-DNSTVK 406 (528)
Q Consensus 330 ~l~~~~g~~VLDl~aG--~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~-~~~~~~ 406 (528)
...+++|++||=.|++ .|..++++|+.+ +..+|++++ ++.+.+.++ .|.+..+. ...|..... ...+..
T Consensus 137 ~~~~~~g~~VlV~Ga~G~vG~~a~qla~~~-g~~~V~~~~-~~~~~~~~~-----~ga~~~~~-~~~~~~~~~~~~~~~g 208 (349)
T 4a27_A 137 VANLREGMSVLVHSAGGGVGQAVAQLCSTV-PNVTVFGTA-STFKHEAIK-----DSVTHLFD-RNADYVQEVKRISAEG 208 (349)
T ss_dssp TSCCCTTCEEEESSTTSHHHHHHHHHHTTS-TTCEEEEEE-CGGGHHHHG-----GGSSEEEE-TTSCHHHHHHHHCTTC
T ss_pred hcCCCCCCEEEEEcCCcHHHHHHHHHHHHc-CCcEEEEeC-CHHHHHHHH-----cCCcEEEc-CCccHHHHHHHhcCCC
Confidence 4567899999999883 344555666543 246899988 665555443 56654222 222222111 112357
Q ss_pred CCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 407 CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 407 fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
+|+||- |+|.. .+..++++|++||+++..
T Consensus 209 ~Dvv~d---~~g~~--------------------------~~~~~~~~l~~~G~~v~~ 237 (349)
T 4a27_A 209 VDIVLD---CLCGD--------------------------NTGKGLSLLKPLGTYILY 237 (349)
T ss_dssp EEEEEE---ECC---------------------------------CTTEEEEEEEEEE
T ss_pred ceEEEE---CCCch--------------------------hHHHHHHHhhcCCEEEEE
Confidence 998874 43311 146688999999999854
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=90.06 E-value=1.8 Score=41.42 Aligned_cols=81 Identities=14% Similarity=0.035 Sum_probs=55.6
Q ss_pred CCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHH-cCCCccEEEEcCcccccccc---------CC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKL-HQVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~-~g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
|.+||=.|++ |+.+.++++.+- .+.+|+.++.++..++.+.+.+.. .+. .+.++.+|+.+.... ..
T Consensus 20 ~k~vlVTGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~~~ 96 (266)
T 4egf_A 20 GKRALITGAT-KGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQFGT--DVHTVAIDLAEPDAPAELARRAAEAF 96 (266)
T ss_dssp TCEEEETTTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCC--CEEEEECCTTSTTHHHHHHHHHHHHH
T ss_pred CCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCC--cEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 6677777765 566776666543 346899999999998887776655 443 378899998874321 01
Q ss_pred CCCCEEEEcCCCCCC
Q 009708 405 VKCDKVLLDAPCSGL 419 (528)
Q Consensus 405 ~~fD~Vl~D~Pcsg~ 419 (528)
+..|.++.++-....
T Consensus 97 g~id~lv~nAg~~~~ 111 (266)
T 4egf_A 97 GGLDVLVNNAGISHP 111 (266)
T ss_dssp TSCSEEEEECCCCCC
T ss_pred CCCCEEEECCCcCCC
Confidence 478999988755443
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=90.06 E-value=1.7 Score=41.81 Aligned_cols=126 Identities=13% Similarity=0.019 Sum_probs=73.7
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEE-cCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------C
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAI-DINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------S 403 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~av-D~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~ 403 (528)
.|.+||=.|++ |+.+..++..+- .+.+|+.+ ..++..++.+.+.++..+. .+.++.+|+.+.... .
T Consensus 26 ~~k~~lVTGas-~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~v~~~~~~~~~~ 102 (267)
T 3u5t_A 26 TNKVAIVTGAS-RGIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEAAGG--KALTAQADVSDPAAVRRLFATAEEA 102 (267)
T ss_dssp -CCEEEEESCS-SHHHHHHHHHHHHHTCEEEEEESSCSHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCC--eEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 36678877765 456666665442 24577766 5677778777777777664 377888998874321 0
Q ss_pred CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcC
Q 009708 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466 (528)
Q Consensus 404 ~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTc 466 (528)
.+..|.++.++-....+.+...++-.|. ..+.....-...+++.+...++.+|.+|+.+.
T Consensus 103 ~g~iD~lvnnAG~~~~~~~~~~~~~~~~---~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS 162 (267)
T 3u5t_A 103 FGGVDVLVNNAGIMPLTTIAETGDAVFD---RVIAVNLKGTFNTLREAAQRLRVGGRIINMST 162 (267)
T ss_dssp HSCEEEEEECCCCCCCCCGGGCCHHHHH---HHHHHHHHHHHHHHHHHHHHEEEEEEEEEECC
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHH---HHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeC
Confidence 1468999987655433333222222221 11111222233456777777788888887653
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=90.03 E-value=0.55 Score=46.56 Aligned_cols=95 Identities=15% Similarity=0.077 Sum_probs=59.3
Q ss_pred HhcCCCCCCeEEEeC-Cc-cchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccc-ccccCCC
Q 009708 329 AVVDPQPGQSIVDCC-AA-PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT-FADNSTV 405 (528)
Q Consensus 329 ~~l~~~~g~~VLDl~-aG-~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~-~~~~~~~ 405 (528)
....+++|++||=.| +| .|..++++|+.+ +.+|++++ ++.+++. ++.+|.+.. +..+-.+ +... ..
T Consensus 146 ~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~--Ga~vi~~~-~~~~~~~----~~~lGa~~~---i~~~~~~~~~~~-~~ 214 (321)
T 3tqh_A 146 NQAEVKQGDVVLIHAGAGGVGHLAIQLAKQK--GTTVITTA-SKRNHAF----LKALGAEQC---INYHEEDFLLAI-ST 214 (321)
T ss_dssp HHTTCCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEE-CHHHHHH----HHHHTCSEE---EETTTSCHHHHC-CS
T ss_pred HhcCCCCCCEEEEEcCCcHHHHHHHHHHHHc--CCEEEEEe-ccchHHH----HHHcCCCEE---EeCCCcchhhhh-cc
Confidence 446788999999885 44 366777888765 35899887 5555544 455787642 2221111 2111 24
Q ss_pred CCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEE
Q 009708 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463 (528)
Q Consensus 406 ~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvy 463 (528)
.+|+|+- |+|.. .+..++++|++||+++.
T Consensus 215 g~D~v~d---~~g~~--------------------------~~~~~~~~l~~~G~iv~ 243 (321)
T 3tqh_A 215 PVDAVID---LVGGD--------------------------VGIQSIDCLKETGCIVS 243 (321)
T ss_dssp CEEEEEE---SSCHH--------------------------HHHHHGGGEEEEEEEEE
T ss_pred CCCEEEE---CCCcH--------------------------HHHHHHHhccCCCEEEE
Confidence 6898874 43311 14678899999999885
|
| >1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A | Back alignment and structure |
|---|
Probab=90.02 E-value=0.52 Score=47.54 Aligned_cols=103 Identities=15% Similarity=0.118 Sum_probs=58.9
Q ss_pred cCCCCC-CeEEEeCC--ccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEc---Ccccccccc--
Q 009708 331 VDPQPG-QSIVDCCA--APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH---ADLRTFADN-- 402 (528)
Q Consensus 331 l~~~~g-~~VLDl~a--G~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~---~D~~~~~~~-- 402 (528)
.++++| ++||=.|+ +.|..++++|+.++ .+++++..++..+...++.++.+|.+..+.... .|+......
T Consensus 162 ~~~~~g~~~VlV~Ga~G~vG~~aiqlak~~G--a~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~i~~~t 239 (364)
T 1gu7_A 162 VKLTPGKDWFIQNGGTSAVGKYASQIGKLLN--FNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWI 239 (364)
T ss_dssp SCCCTTTCEEEESCTTSHHHHHHHHHHHHHT--CEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHH
T ss_pred hccCCCCcEEEECCCCcHHHHHHHHHHHHCC--CEEEEEecCccccHHHHHHHHhcCCeEEEecCccchHHHHHHHHHHh
Confidence 367889 99998886 34666778887653 577777655544322233445678764222111 122111110
Q ss_pred --CCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 403 --STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 403 --~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
....+|+||- |+|.. . +..++++|++||+++..
T Consensus 240 ~~~~~g~Dvvid---~~G~~-------------------------~-~~~~~~~l~~~G~~v~~ 274 (364)
T 1gu7_A 240 KQSGGEAKLALN---CVGGK-------------------------S-STGIARKLNNNGLMLTY 274 (364)
T ss_dssp HHHTCCEEEEEE---SSCHH-------------------------H-HHHHHHTSCTTCEEEEC
T ss_pred hccCCCceEEEE---CCCch-------------------------h-HHHHHHHhccCCEEEEe
Confidence 1246998874 33311 1 22678999999998854
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=89.85 E-value=2.6 Score=40.08 Aligned_cols=78 Identities=17% Similarity=0.104 Sum_probs=54.1
Q ss_pred CCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 405 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~~ 405 (528)
|.+||=.|++ |+.+.++++.+- .+.+|+.+|.++..++.+.+.++..+. .+.++.+|+.+.... ..+
T Consensus 6 ~k~vlVTGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~~~g 82 (257)
T 3imf_A 6 EKVVIITGGS-SGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQFPG--QILTVQMDVRNTDDIQKMIEQIDEKFG 82 (257)
T ss_dssp TCEEEETTTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCSTT--CEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 5677766654 667777766542 346899999999998888777665443 478889998874321 014
Q ss_pred CCCEEEEcCCC
Q 009708 406 KCDKVLLDAPC 416 (528)
Q Consensus 406 ~fD~Vl~D~Pc 416 (528)
..|.++.++-.
T Consensus 83 ~id~lv~nAg~ 93 (257)
T 3imf_A 83 RIDILINNAAG 93 (257)
T ss_dssp CCCEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 68999987654
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=89.67 E-value=3 Score=39.63 Aligned_cols=80 Identities=14% Similarity=0.048 Sum_probs=54.7
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc----------C
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN----------S 403 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~----------~ 403 (528)
.|.+||=.|+ +|+.+.+++..+- .+.+|+.++.++..++.+.+.++..+. .+.++.+|+.+.... .
T Consensus 8 ~~k~vlVTGa-s~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (260)
T 2ae2_A 8 EGCTALVTGG-SRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGF--KVEASVCDLSSRSERQELMNTVANHF 84 (260)
T ss_dssp TTCEEEEESC-SSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--EEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 3667887776 5677777766543 346899999999888877666665543 477888998764211 1
Q ss_pred CCCCCEEEEcCCCC
Q 009708 404 TVKCDKVLLDAPCS 417 (528)
Q Consensus 404 ~~~fD~Vl~D~Pcs 417 (528)
.+..|.++.++-..
T Consensus 85 ~g~id~lv~~Ag~~ 98 (260)
T 2ae2_A 85 HGKLNILVNNAGIV 98 (260)
T ss_dssp TTCCCEEEECCCCC
T ss_pred CCCCCEEEECCCCC
Confidence 15789999876543
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=89.65 E-value=4.3 Score=38.85 Aligned_cols=80 Identities=18% Similarity=0.085 Sum_probs=56.8
Q ss_pred CCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 405 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~~ 405 (528)
+.+||=.|+ +|+.+.++++.+- .+.+|++++.++..++.+.+.++..+....+.++.+|+.+.... ..+
T Consensus 32 ~k~vlVTGa-sggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g 110 (279)
T 1xg5_A 32 DRLALVTGA-SGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQHS 110 (279)
T ss_dssp TCEEEEEST-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHhCC
Confidence 567777775 5677777776542 34689999999999888877777777655678888998764321 013
Q ss_pred CCCEEEEcCCC
Q 009708 406 KCDKVLLDAPC 416 (528)
Q Consensus 406 ~fD~Vl~D~Pc 416 (528)
.+|.|+.++-.
T Consensus 111 ~iD~vi~~Ag~ 121 (279)
T 1xg5_A 111 GVDICINNAGL 121 (279)
T ss_dssp CCSEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 68999987644
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=89.65 E-value=3.1 Score=39.36 Aligned_cols=78 Identities=13% Similarity=-0.006 Sum_probs=52.9
Q ss_pred CCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 405 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~~ 405 (528)
+.+||=.|+ +|+.+.+++..+- .+.+|+.++.++..++.+.+.++..+. .+.++.+|+.+.... ..+
T Consensus 2 ~k~vlVTGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~v~~~~~~~~~~~g 78 (256)
T 1geg_A 2 KKVALVTGA-GQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGG--HAVAVKVDVSDRDQVFAAVEQARKTLG 78 (256)
T ss_dssp CCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHHHTT
T ss_pred CCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 345666665 4667777766543 345899999999888877776666553 377888898764311 024
Q ss_pred CCCEEEEcCCC
Q 009708 406 KCDKVLLDAPC 416 (528)
Q Consensus 406 ~fD~Vl~D~Pc 416 (528)
.+|.++.++-.
T Consensus 79 ~id~lv~nAg~ 89 (256)
T 1geg_A 79 GFDVIVNNAGV 89 (256)
T ss_dssp CCCEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 78999987654
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* | Back alignment and structure |
|---|
Probab=89.64 E-value=3.5 Score=39.70 Aligned_cols=120 Identities=18% Similarity=0.057 Sum_probs=69.7
Q ss_pred CCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHH-HHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGR-LRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~-l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
|.+||=.|+ +|+.+.++++.+- .+.+|+.++.++.. .+.+.+.++..|. .+.++.+|+.+.... ..
T Consensus 29 ~k~vlVTGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~ 105 (283)
T 1g0o_A 29 GKVALVTGA-GRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGS--DAACVKANVGVVEDIVRMFEEAVKIF 105 (283)
T ss_dssp TCEEEETTT-TSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHHhCC--CeEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 567777765 4677777776553 34589999988653 4555555555553 377888898764211 01
Q ss_pred CCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHH----HHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEEL----KILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 405 ~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l----~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
+..|.++.++-....+.+.. .+.++.... ..-...+++.+...++.+|.+|+.+
T Consensus 106 g~iD~lv~~Ag~~~~~~~~~-------~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is 163 (283)
T 1g0o_A 106 GKLDIVCSNSGVVSFGHVKD-------VTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMG 163 (283)
T ss_dssp SCCCEEEECCCCCCCCCGGG-------CCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEEC
T ss_pred CCCCEEEECCCcCCCCCccc-------CCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 46899998765433222211 222332221 1222345666677677788888654
|
| >3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=89.58 E-value=3.5 Score=39.86 Aligned_cols=126 Identities=11% Similarity=-0.011 Sum_probs=73.7
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChH-------HHHHHHHHHHHcCCCccEEEEcCcccccccc----
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKG-------RLRILNETAKLHQVNSVIRTIHADLRTFADN---- 402 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~-------~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---- 402 (528)
.|.+||=.|++ |+.+.++++.+- .+.+|+.++.++. .++.+.+.++..+. .+.++.+|+.+....
T Consensus 8 ~~k~vlVTGas-~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~v~~~~ 84 (285)
T 3sc4_A 8 RGKTMFISGGS-RGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAGG--QALPIVGDIRDGDAVAAAV 84 (285)
T ss_dssp TTCEEEEESCS-SHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHHTS--EEEEEECCTTSHHHHHHHH
T ss_pred CCCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEECChhhhhhhhHHHHHHHHHHHhcCC--cEEEEECCCCCHHHHHHHH
Confidence 36678877766 566776666553 3458999999876 45555555655553 478889998874321
Q ss_pred -----CCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCc--CCCEEEEEcC
Q 009708 403 -----STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVK--PGGVLVYSTC 466 (528)
Q Consensus 403 -----~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~Lk--pGG~LvysTc 466 (528)
..+..|.++.++-....+.+...+.-.|. ..+.-...-...+.+.+...++ .+|.+|+.+.
T Consensus 85 ~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~---~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS 152 (285)
T 3sc4_A 85 AKTVEQFGGIDICVNNASAINLGSIEEVPLKRFD---LMNGIQVRGTYAVSQSCIPHMKGRDNPHILTLSP 152 (285)
T ss_dssp HHHHHHHSCCSEEEECCCCCCCCCTTTSCHHHHH---HHHHHHHHHHHHHHHHHGGGTTTSSSCEEEECCC
T ss_pred HHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHH---HHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECC
Confidence 02479999987755443333322222221 1111122233446777777775 3577776543
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=89.57 E-value=2.1 Score=41.36 Aligned_cols=83 Identities=13% Similarity=0.041 Sum_probs=57.2
Q ss_pred CCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 405 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~~ 405 (528)
+.+||=.|++ |+.+.+++..+- .+.+|+.++.++..++.+.+.++..+. .+.++.+|+.+.... ..+
T Consensus 24 ~k~~lVTGas-~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~~g 100 (279)
T 3sju_A 24 PQTAFVTGVS-SGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAAGH--DVDGSSCDVTSTDEVHAAVAAAVERFG 100 (279)
T ss_dssp -CEEEEESTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTC--CEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred CCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--cEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 6678888865 566766665442 356899999999999888887776654 378889998764321 024
Q ss_pred CCCEEEEcCCCCCCcc
Q 009708 406 KCDKVLLDAPCSGLGV 421 (528)
Q Consensus 406 ~fD~Vl~D~Pcsg~G~ 421 (528)
..|.++.++-....+.
T Consensus 101 ~id~lv~nAg~~~~~~ 116 (279)
T 3sju_A 101 PIGILVNSAGRNGGGE 116 (279)
T ss_dssp SCCEEEECCCCCCCSC
T ss_pred CCcEEEECCCCCCCCC
Confidence 7899998776544333
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=89.52 E-value=0.61 Score=47.20 Aligned_cols=99 Identities=13% Similarity=0.071 Sum_probs=58.8
Q ss_pred hcCCC--C-------CCeEEEeCCcc-chHHHHHHHHcCCCcEEEEEcCCh---HHHHHHHHHHHHcCCCccEEEEcCcc
Q 009708 330 VVDPQ--P-------GQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINK---GRLRILNETAKLHQVNSVIRTIHADL 396 (528)
Q Consensus 330 ~l~~~--~-------g~~VLDl~aG~-G~kt~~la~~~~~~~~v~avD~s~---~~l~~~~~n~~~~g~~~~i~~~~~D~ 396 (528)
..+++ + |++||-.|+|+ |..+++++..+ +.+|+++|.++ ++++.++ .+|.+. +. ..|.
T Consensus 166 ~~~~~~~~~~~~~~~g~~VlV~GaG~vG~~~~q~a~~~--Ga~Vi~~~~~~~~~~~~~~~~----~~ga~~-v~--~~~~ 236 (366)
T 2cdc_A 166 QKRVPVWTCDDGTLNCRKVLVVGTGPIGVLFTLLFRTY--GLEVWMANRREPTEVEQTVIE----ETKTNY-YN--SSNG 236 (366)
T ss_dssp GGGSSCCSCTTSSSTTCEEEEESCHHHHHHHHHHHHHH--TCEEEEEESSCCCHHHHHHHH----HHTCEE-EE--CTTC
T ss_pred ccCccccccccccCCCCEEEEECCCHHHHHHHHHHHhC--CCEEEEEeCCccchHHHHHHH----HhCCce-ec--hHHH
Confidence 44566 7 99999999843 33445555543 24999999998 7776654 356542 21 1121
Q ss_pred ccccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHH-HHHhccCcCCCEEEEEc
Q 009708 397 RTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELL-DAASLLVKPGGVLVYST 465 (528)
Q Consensus 397 ~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL-~~a~~~LkpGG~LvysT 465 (528)
.+........+|+|+- |+|... .+ +.+++.|++||+++...
T Consensus 237 ~~~~~~~~~~~d~vid---~~g~~~-------------------------~~~~~~~~~l~~~G~iv~~g 278 (366)
T 2cdc_A 237 YDKLKDSVGKFDVIID---ATGADV-------------------------NILGNVIPLLGRNGVLGLFG 278 (366)
T ss_dssp SHHHHHHHCCEEEEEE---CCCCCT-------------------------HHHHHHGGGEEEEEEEEECS
T ss_pred HHHHHHhCCCCCEEEE---CCCChH-------------------------HHHHHHHHHHhcCCEEEEEe
Confidence 1110001146898875 322110 25 77889999999988543
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=89.40 E-value=2.3 Score=41.21 Aligned_cols=80 Identities=15% Similarity=0.021 Sum_probs=55.3
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
.+.+||=.|++ |+.+.+++..+- .+.+|+.+|.++..++.+.+.+...+. .+.++.+|+.+.... ..
T Consensus 27 ~~k~~lVTGas-~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~~ 103 (283)
T 3v8b_A 27 PSPVALITGAG-SGIGRATALALAADGVTVGALGRTRTEVEEVADEIVGAGG--QAIALEADVSDELQMRNAVRDLVLKF 103 (283)
T ss_dssp CCCEEEEESCS-SHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHTTTTC--CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 36678877765 566766665442 356899999999998887777765543 378889998774321 02
Q ss_pred CCCCEEEEcCCCC
Q 009708 405 VKCDKVLLDAPCS 417 (528)
Q Consensus 405 ~~fD~Vl~D~Pcs 417 (528)
+..|.++.++-..
T Consensus 104 g~iD~lVnnAg~~ 116 (283)
T 3v8b_A 104 GHLDIVVANAGIN 116 (283)
T ss_dssp SCCCEEEECCCCC
T ss_pred CCCCEEEECCCCC
Confidence 4799999876543
|
| >3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* | Back alignment and structure |
|---|
Probab=89.30 E-value=2.8 Score=39.92 Aligned_cols=80 Identities=13% Similarity=-0.018 Sum_probs=54.3
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEE-cCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------C
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAI-DINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------S 403 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~av-D~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~ 403 (528)
.|.+||=.|++ |+.+.++++.+- .+.+|+.+ +.++..++.+.+.++..+. .+.++.+|+.+.... .
T Consensus 3 ~~k~vlVTGas-~gIG~aia~~l~~~G~~vv~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (258)
T 3oid_A 3 QNKCALVTGSS-RGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIEKLGV--KVLVVKANVGQPAKIKEMFQQIDET 79 (258)
T ss_dssp CCCEEEESSCS-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTTC--CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEecCC-chHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCC--cEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 35677766654 677777776553 34577775 8999888888777776664 378889998874321 0
Q ss_pred CCCCCEEEEcCCCC
Q 009708 404 TVKCDKVLLDAPCS 417 (528)
Q Consensus 404 ~~~fD~Vl~D~Pcs 417 (528)
.++.|.++.++-..
T Consensus 80 ~g~id~lv~nAg~~ 93 (258)
T 3oid_A 80 FGRLDVFVNNAASG 93 (258)
T ss_dssp HSCCCEEEECCCCC
T ss_pred cCCCCEEEECCCCC
Confidence 24689999876543
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=89.27 E-value=2.7 Score=40.35 Aligned_cols=81 Identities=19% Similarity=0.133 Sum_probs=54.5
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcC-------------ChHHHHHHHHHHHHcCCCccEEEEcCcccccc
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDI-------------NKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~-------------s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~ 400 (528)
.|.+||=.|++ |+.+.+++..+- .+.+|+.+|. ++..++.+.+.++..+. .+.++..|+.+..
T Consensus 10 ~~k~~lVTGas-~GIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~ 86 (277)
T 3tsc_A 10 EGRVAFITGAA-RGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANR--RIVAAVVDTRDFD 86 (277)
T ss_dssp TTCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTC--CEEEEECCTTCHH
T ss_pred CCCEEEEECCc-cHHHHHHHHHHHHcCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCC--eEEEEECCCCCHH
Confidence 36678877766 556666665442 3568999998 67777777777766654 3788889987743
Q ss_pred cc---------CCCCCCEEEEcCCCCC
Q 009708 401 DN---------STVKCDKVLLDAPCSG 418 (528)
Q Consensus 401 ~~---------~~~~fD~Vl~D~Pcsg 418 (528)
.. ..+..|.++.++-...
T Consensus 87 ~v~~~~~~~~~~~g~id~lvnnAg~~~ 113 (277)
T 3tsc_A 87 RLRKVVDDGVAALGRLDIIVANAGVAA 113 (277)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCCCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCCC
Confidence 21 0146899998765543
|
| >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=89.16 E-value=4.2 Score=38.88 Aligned_cols=80 Identities=15% Similarity=0.074 Sum_probs=53.3
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHH-HHcCCCccEEEEcCcccccccc---------C
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETA-KLHQVNSVIRTIHADLRTFADN---------S 403 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~-~~~g~~~~i~~~~~D~~~~~~~---------~ 403 (528)
.+.+||=.|++ |+.+.++++.+- .+.+|++++.++..++.+.+.+ +..+. .+.++.+|+.+.... .
T Consensus 20 ~~k~~lVTGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~--~~~~~~~Dl~~~~~v~~~~~~~~~~ 96 (267)
T 1vl8_A 20 RGRVALVTGGS-RGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGV--ETMAFRCDVSNYEEVKKLLEAVKEK 96 (267)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCC--CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCC--eEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 35677777754 677777776543 3468999999998887766655 44443 367788898764211 0
Q ss_pred CCCCCEEEEcCCCC
Q 009708 404 TVKCDKVLLDAPCS 417 (528)
Q Consensus 404 ~~~fD~Vl~D~Pcs 417 (528)
.+.+|.++.++-..
T Consensus 97 ~g~iD~lvnnAg~~ 110 (267)
T 1vl8_A 97 FGKLDTVVNAAGIN 110 (267)
T ss_dssp HSCCCEEEECCCCC
T ss_pred cCCCCEEEECCCcC
Confidence 14689999876543
|
| >3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=89.13 E-value=3 Score=39.14 Aligned_cols=74 Identities=23% Similarity=0.267 Sum_probs=49.0
Q ss_pred CCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc--------CCCCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN--------STVKC 407 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~--------~~~~f 407 (528)
|.+||=.|+ +|+.+.++++.+..++.|++++.++..++.+.+ .. .+.++..|+.+.... ..+..
T Consensus 5 ~k~vlITGa-s~gIG~~~a~~l~~g~~v~~~~r~~~~~~~~~~------~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~i 76 (245)
T 3e9n_A 5 KKIAVVTGA-TGGMGIEIVKDLSRDHIVYALGRNPEHLAALAE------IE-GVEPIESDIVKEVLEEGGVDKLKNLDHV 76 (245)
T ss_dssp -CEEEEEST-TSHHHHHHHHHHTTTSEEEEEESCHHHHHHHHT------ST-TEEEEECCHHHHHHTSSSCGGGTTCSCC
T ss_pred CCEEEEEcC-CCHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHh------hc-CCcceecccchHHHHHHHHHHHHhcCCC
Confidence 556777775 467888888877667899999999888765543 22 377888887654211 12468
Q ss_pred CEEEEcCCCC
Q 009708 408 DKVLLDAPCS 417 (528)
Q Consensus 408 D~Vl~D~Pcs 417 (528)
|.++.++-..
T Consensus 77 d~lv~~Ag~~ 86 (245)
T 3e9n_A 77 DTLVHAAAVA 86 (245)
T ss_dssp SEEEECC---
T ss_pred CEEEECCCcC
Confidence 9999876543
|
| >2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=89.06 E-value=3 Score=40.25 Aligned_cols=121 Identities=13% Similarity=0.006 Sum_probs=67.7
Q ss_pred CCCeEEEeCCcc-chHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------C
Q 009708 335 PGQSIVDCCAAP-GGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------S 403 (528)
Q Consensus 335 ~g~~VLDl~aG~-G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~ 403 (528)
.|.+||=.|+++ |+.+.+++..+- .+.+|+.++.++..-+.+++..+..+ + +.++.+|+.+.... .
T Consensus 20 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~--~-~~~~~~Dl~~~~~v~~~~~~~~~~ 96 (285)
T 2p91_A 20 EGKRALITGVANERSIAYGIAKSFHREGAQLAFTYATPKLEKRVREIAKGFG--S-DLVVKCDVSLDEDIKNLKKFLEEN 96 (285)
T ss_dssp TTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTT--C-CCEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--C-eEEEEcCCCCHHHHHHHHHHHHHH
Confidence 367889888863 778877776553 34689999998752223333223333 2 45778888764211 1
Q ss_pred CCCCCEEEEcCCCCCC----ccccCCchhhccCCHHHHHHH----HHHHHHHHHHHhccCc-CCCEEEEEc
Q 009708 404 TVKCDKVLLDAPCSGL----GVLSKRADLRWNRRLEDMEEL----KILQDELLDAASLLVK-PGGVLVYST 465 (528)
Q Consensus 404 ~~~fD~Vl~D~Pcsg~----G~~~~~pd~~~~~~~~~~~~l----~~~q~~lL~~a~~~Lk-pGG~LvysT 465 (528)
.+..|.++.++-.... +.+. ..+.++.... ..-...+++.+...++ .+|++|+.+
T Consensus 97 ~g~iD~lv~~Ag~~~~~~~~~~~~-------~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~is 160 (285)
T 2p91_A 97 WGSLDIIVHSIAYAPKEEFKGGVI-------DTSREGFKIAMDISVYSLIALTRELLPLMEGRNGAIVTLS 160 (285)
T ss_dssp TSCCCEEEECCCCCCGGGGSSCGG-------GCCHHHHHHHHHHHTHHHHHHHHHHGGGGTTSCCEEEEEE
T ss_pred cCCCCEEEECCCCCCcccCCCCcc-------cCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCEEEEEc
Confidence 2478999987654321 1111 1222332221 1122345666666665 578888654
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=88.98 E-value=1.1 Score=45.30 Aligned_cols=95 Identities=13% Similarity=0.023 Sum_probs=59.6
Q ss_pred CCCCeEEEeCCc--cchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccc-ccCCCCCCEE
Q 009708 334 QPGQSIVDCCAA--PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA-DNSTVKCDKV 410 (528)
Q Consensus 334 ~~g~~VLDl~aG--~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~-~~~~~~fD~V 410 (528)
++|++||=.|++ .|..++++|+.+ +.+|+++. ++++++.+ +.+|.+..+.....|..+.. ....+.+|+|
T Consensus 163 ~~g~~VlV~Ga~G~vG~~a~qla~~~--Ga~Vi~~~-~~~~~~~~----~~lGa~~vi~~~~~~~~~~v~~~t~g~~d~v 235 (371)
T 3gqv_A 163 SKPVYVLVYGGSTATATVTMQMLRLS--GYIPIATC-SPHNFDLA----KSRGAEEVFDYRAPNLAQTIRTYTKNNLRYA 235 (371)
T ss_dssp SSCCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEE-CGGGHHHH----HHTTCSEEEETTSTTHHHHHHHHTTTCCCEE
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHHC--CCEEEEEe-CHHHHHHH----HHcCCcEEEECCCchHHHHHHHHccCCccEE
Confidence 789999999983 677888888874 35888884 88887755 45787642221122222111 1113459988
Q ss_pred EEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccC-cCCCEEEE
Q 009708 411 LLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLV-KPGGVLVY 463 (528)
Q Consensus 411 l~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~L-kpGG~Lvy 463 (528)
+- |+|.. ..+..+++.| ++||+++.
T Consensus 236 ~d---~~g~~-------------------------~~~~~~~~~l~~~~G~iv~ 261 (371)
T 3gqv_A 236 LD---CITNV-------------------------ESTTFCFAAIGRAGGHYVS 261 (371)
T ss_dssp EE---SSCSH-------------------------HHHHHHHHHSCTTCEEEEE
T ss_pred EE---CCCch-------------------------HHHHHHHHHhhcCCCEEEE
Confidence 74 43311 1367778888 69999885
|
| >2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A* | Back alignment and structure |
|---|
Probab=88.95 E-value=1.7 Score=41.75 Aligned_cols=121 Identities=12% Similarity=0.000 Sum_probs=69.2
Q ss_pred CCCeEEEeCCc-cchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------C
Q 009708 335 PGQSIVDCCAA-PGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------S 403 (528)
Q Consensus 335 ~g~~VLDl~aG-~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~ 403 (528)
.|.+||=.|++ +|+.+.+++..+- .+.+|+.++.++..-+.+++..+..+ . +.++.+|+.+.... .
T Consensus 5 ~~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~--~-~~~~~~D~~~~~~v~~~~~~~~~~ 81 (275)
T 2pd4_A 5 KGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRPIAQELN--S-PYVYELDVSKEEHFKSLYNSVKKD 81 (275)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTHHHHHHHHHHTT--C-CCEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--C-cEEEEcCCCCHHHHHHHHHHHHHH
Confidence 36688888886 4788888877653 34589999998762222333223333 2 56778888764211 1
Q ss_pred CCCCCEEEEcCCCCCC----ccccCCchhhccCCHHHHHHH----HHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 404 TVKCDKVLLDAPCSGL----GVLSKRADLRWNRRLEDMEEL----KILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 404 ~~~fD~Vl~D~Pcsg~----G~~~~~pd~~~~~~~~~~~~l----~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
.+..|.++.++-.... +.+. ..+.++.... ..-...+++.+...++++|++|+.+
T Consensus 82 ~g~id~lv~nAg~~~~~~~~~~~~-------~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is 144 (275)
T 2pd4_A 82 LGSLDFIVHSVAFAPKEALEGSLL-------ETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLS 144 (275)
T ss_dssp TSCEEEEEECCCCCCGGGGSSCGG-------GCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred cCCCCEEEECCccCccccCCCCcc-------cCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEe
Confidence 2468999887644321 1111 1222333221 2223446677777777778888654
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=88.93 E-value=4.1 Score=39.65 Aligned_cols=80 Identities=23% Similarity=0.156 Sum_probs=54.3
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCC------------hHHHHHHHHHHHHcCCCccEEEEcCccccccc
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDIN------------KGRLRILNETAKLHQVNSVIRTIHADLRTFAD 401 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s------------~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~ 401 (528)
.|.+||=.|++. |++..++..+- .+.+|+.+|.+ +..++.+.+.++..+. .+.++..|+.+...
T Consensus 27 ~gk~~lVTGas~-GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~ 103 (299)
T 3t7c_A 27 EGKVAFITGAAR-GQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGR--RIIASQVDVRDFDA 103 (299)
T ss_dssp TTCEEEEESTTS-HHHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHH
T ss_pred CCCEEEEECCCC-HHHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHhcCC--ceEEEECCCCCHHH
Confidence 466888888764 56666665442 35689999987 7777777777776664 37889999887432
Q ss_pred c---------CCCCCCEEEEcCCCC
Q 009708 402 N---------STVKCDKVLLDAPCS 417 (528)
Q Consensus 402 ~---------~~~~fD~Vl~D~Pcs 417 (528)
. ..+..|.++.++-..
T Consensus 104 v~~~~~~~~~~~g~iD~lv~nAg~~ 128 (299)
T 3t7c_A 104 MQAAVDDGVTQLGRLDIVLANAALA 128 (299)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHHHHHHhCCCCEEEECCCCC
Confidence 1 014789999876543
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=88.91 E-value=3.2 Score=39.42 Aligned_cols=80 Identities=18% Similarity=0.091 Sum_probs=53.1
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
.|.+||=.|++ |+.+.++++.+- .+.+|+.+|.++..++.+...+ +- .+.++.+|+.+.... ..
T Consensus 7 ~~k~vlVTGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~~--~~~~~~~D~~~~~~v~~~~~~~~~~~ 80 (259)
T 4e6p_A 7 EGKSALITGSA-RGIGRAFAEAYVREGATVAIADIDIERARQAAAEI---GP--AAYAVQMDVTRQDSIDAAIAATVEHA 80 (259)
T ss_dssp TTCEEEEETCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---CT--TEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---CC--CceEEEeeCCCHHHHHHHHHHHHHHc
Confidence 46678877755 677777766542 3468999999988876655443 32 367888998764321 12
Q ss_pred CCCCEEEEcCCCCCCc
Q 009708 405 VKCDKVLLDAPCSGLG 420 (528)
Q Consensus 405 ~~fD~Vl~D~Pcsg~G 420 (528)
+..|.++.++-....+
T Consensus 81 g~id~lv~~Ag~~~~~ 96 (259)
T 4e6p_A 81 GGLDILVNNAALFDLA 96 (259)
T ss_dssp SSCCEEEECCCCCCCB
T ss_pred CCCCEEEECCCcCCCC
Confidence 4799999887654433
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=88.88 E-value=1.5 Score=41.71 Aligned_cols=120 Identities=13% Similarity=-0.034 Sum_probs=70.6
Q ss_pred CCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcC-ChHHHHHHHHHHHHcCCCccEEEEcCccccccccC---------C
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDI-NKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS---------T 404 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~-s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~---------~ 404 (528)
+.+||=.|+ +|+.+.++++.+- .+.+|++++. ++..++.+.+.++..+. .+.++.+|+.+..... .
T Consensus 21 ~k~vlItGa-sggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~ 97 (274)
T 1ja9_A 21 GKVALTTGA-GRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGA--QGVAIQADISKPSEVVALFDKAVSHF 97 (274)
T ss_dssp TCEEEETTT-TSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhcCC--cEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 567876664 5778887777553 2458999998 88888777776666553 3778889987643210 1
Q ss_pred CCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHH----HHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEEL----KILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 405 ~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l----~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
+.+|.|+.++-....+.+.. .+.++.... ..-...+++.+...++.+|.+|+.+
T Consensus 98 ~~~d~vi~~Ag~~~~~~~~~-------~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~s 155 (274)
T 1ja9_A 98 GGLDFVMSNSGMEVWCDELE-------VTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTS 155 (274)
T ss_dssp SCEEEEECCCCCCCCCCGGG-------CCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred CCCCEEEECCCCCCCccccc-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCEEEEEc
Confidence 36899987665433222111 222222221 1222345555566555568877653
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* | Back alignment and structure |
|---|
Probab=88.86 E-value=4.5 Score=38.89 Aligned_cols=80 Identities=16% Similarity=0.077 Sum_probs=55.1
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
.+.+||=.|++ |+.+..++..+- .+.+|++++.++..++.+.+.++..+. .+.++.+|+.+.... ..
T Consensus 21 ~~k~vlVTGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~~~ 97 (277)
T 2rhc_B 21 DSEVALVTGAT-SGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGV--EADGRTCDVRSVPEIEALVAAVVERY 97 (277)
T ss_dssp TSCEEEEETCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--ceEEEECCCCCHHHHHHHHHHHHHHh
Confidence 36678877765 677777766543 345899999999988877777766553 377888998764211 12
Q ss_pred CCCCEEEEcCCCC
Q 009708 405 VKCDKVLLDAPCS 417 (528)
Q Consensus 405 ~~fD~Vl~D~Pcs 417 (528)
+.+|.++.++-..
T Consensus 98 g~iD~lv~~Ag~~ 110 (277)
T 2rhc_B 98 GPVDVLVNNAGRP 110 (277)
T ss_dssp CSCSEEEECCCCC
T ss_pred CCCCEEEECCCCC
Confidence 4689999876543
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A* | Back alignment and structure |
|---|
Probab=88.86 E-value=2.7 Score=40.54 Aligned_cols=80 Identities=23% Similarity=0.179 Sum_probs=53.5
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCC----------------hHHHHHHHHHHHHcCCCccEEEEcCccc
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDIN----------------KGRLRILNETAKLHQVNSVIRTIHADLR 397 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s----------------~~~l~~~~~n~~~~g~~~~i~~~~~D~~ 397 (528)
.|.+||=.|++. +.+.+++..+- .+.+|+.+|.+ ++.++.+.+.++..+. .+.++..|+.
T Consensus 10 ~~k~~lVTGas~-gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Dv~ 86 (286)
T 3uve_A 10 EGKVAFVTGAAR-GQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHNR--RIVTAEVDVR 86 (286)
T ss_dssp TTCEEEEESTTS-HHHHHHHHHHHHTTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTTC--CEEEEECCTT
T ss_pred CCCEEEEeCCCc-hHHHHHHHHHHHCCCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhcCC--ceEEEEcCCC
Confidence 466788887764 56666665542 35689999987 6777776666665553 4788899988
Q ss_pred ccccc---------CCCCCCEEEEcCCCC
Q 009708 398 TFADN---------STVKCDKVLLDAPCS 417 (528)
Q Consensus 398 ~~~~~---------~~~~fD~Vl~D~Pcs 417 (528)
+.... ..+..|.++.++-..
T Consensus 87 ~~~~v~~~~~~~~~~~g~id~lv~nAg~~ 115 (286)
T 3uve_A 87 DYDALKAAVDSGVEQLGRLDIIVANAGIG 115 (286)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECCccc
Confidence 64321 014789999876543
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=88.86 E-value=2.2 Score=40.61 Aligned_cols=126 Identities=13% Similarity=-0.007 Sum_probs=73.3
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEE-cCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------C
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAI-DINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------S 403 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~av-D~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~ 403 (528)
.|.+||=.|++ |+.+.+++..+- .+.+|+.+ +.+....+.+.+.++..+.. +.++.+|+.+.... .
T Consensus 7 ~~k~vlVTGas-~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Dv~~~~~v~~~~~~~~~~ 83 (259)
T 3edm_A 7 TNRTIVVAGAG-RDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKLGRS--ALAIKADLTNAAEVEAAISAAADK 83 (259)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHTTTSC--CEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCc--eEEEEcCCCCHHHHHHHHHHHHHH
Confidence 36678877765 556666665542 34578777 78888888777777766543 67888998774321 0
Q ss_pred CCCCCEEEEcCCCC-CCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcC
Q 009708 404 TVKCDKVLLDAPCS-GLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466 (528)
Q Consensus 404 ~~~fD~Vl~D~Pcs-g~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTc 466 (528)
.+..|.++.++-.. ..+.+...+.-.|. ..+.-...-...+++.+...++++|.+|+.+.
T Consensus 84 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~---~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS 144 (259)
T 3edm_A 84 FGEIHGLVHVAGGLIARKTIAEMDEAFWH---QVLDVNLTSLFLTAKTALPKMAKGGAIVTFSS 144 (259)
T ss_dssp HCSEEEEEECCCCCCCCCCTTTCCHHHHH---HHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred hCCCCEEEECCCccCCCCChhhCCHHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCEEEEEcC
Confidence 14689998876332 11222221111121 11111222234567777888877888886543
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=88.84 E-value=2.9 Score=39.34 Aligned_cols=79 Identities=14% Similarity=0.068 Sum_probs=56.3
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
.+.+||=.|++ |+.+.++++.+- .+.+|+.+|.++..++.+.+.++..+. .+.++.+|+.+.... ..
T Consensus 8 ~~k~vlITGas-~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (253)
T 3qiv_A 8 ENKVGIVTGSG-GGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADGG--TAISVAVDVSDPESAKAMADRTLAEF 84 (253)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--EEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCC-ChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 36678877765 667777766553 346899999999999888888777653 478889998874321 01
Q ss_pred CCCCEEEEcCCC
Q 009708 405 VKCDKVLLDAPC 416 (528)
Q Consensus 405 ~~fD~Vl~D~Pc 416 (528)
+..|.++.++-.
T Consensus 85 g~id~li~~Ag~ 96 (253)
T 3qiv_A 85 GGIDYLVNNAAI 96 (253)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCCEEEECCCc
Confidence 378999987654
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.81 E-value=1.2 Score=45.23 Aligned_cols=96 Identities=15% Similarity=0.087 Sum_probs=57.9
Q ss_pred CCCCCeEEEeCC-c-cchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEE
Q 009708 333 PQPGQSIVDCCA-A-PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKV 410 (528)
Q Consensus 333 ~~~g~~VLDl~a-G-~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~V 410 (528)
+++|++||=.|+ | .|..++++|+.+ +.+|++++ ++.+++.+ +.+|.+..+.....|..+.... ...+|+|
T Consensus 181 ~~~g~~VlV~Ga~G~vG~~~~qla~~~--Ga~Vi~~~-~~~~~~~~----~~lGa~~v~~~~~~~~~~~~~~-~~g~D~v 252 (375)
T 2vn8_A 181 NCTGKRVLILGASGGVGTFAIQVMKAW--DAHVTAVC-SQDASELV----RKLGADDVIDYKSGSVEEQLKS-LKPFDFI 252 (375)
T ss_dssp TCTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEE-CGGGHHHH----HHTTCSEEEETTSSCHHHHHHT-SCCBSEE
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHhC--CCEEEEEe-ChHHHHHH----HHcCCCEEEECCchHHHHHHhh-cCCCCEE
Confidence 778999999983 3 455667777764 35899998 77776654 4567653221111121111111 1469988
Q ss_pred EEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEE
Q 009708 411 LLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463 (528)
Q Consensus 411 l~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvy 463 (528)
|- |+|... ..+..+++.+++||+++.
T Consensus 253 id---~~g~~~------------------------~~~~~~~~~l~~~G~iv~ 278 (375)
T 2vn8_A 253 LD---NVGGST------------------------ETWAPDFLKKWSGATYVT 278 (375)
T ss_dssp EE---SSCTTH------------------------HHHGGGGBCSSSCCEEEE
T ss_pred EE---CCCChh------------------------hhhHHHHHhhcCCcEEEE
Confidence 74 333111 125678899999999885
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=88.73 E-value=5.2 Score=37.06 Aligned_cols=80 Identities=18% Similarity=0.003 Sum_probs=54.1
Q ss_pred CCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHH-HcCCCccEEEEcCcccccccc---C------C
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAK-LHQVNSVIRTIHADLRTFADN---S------T 404 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~-~~g~~~~i~~~~~D~~~~~~~---~------~ 404 (528)
+.+||=.|++ |+.+.++++.+- .+.+|+.++.++..++.+.+.+. ..+. .+.++.+|+.+.... . .
T Consensus 2 ~k~vlITGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~v~~~~~~~~~~~ 78 (235)
T 3l77_A 2 MKVAVITGAS-RGIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQGV--EVFYHHLDVSKAESVEEFSKKVLERF 78 (235)
T ss_dssp CCEEEEESCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCC--CEEEEECCTTCHHHHHHHCC-HHHHH
T ss_pred CCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCC--eEEEEEeccCCHHHHHHHHHHHHHhc
Confidence 4567766754 667777776553 34589999999999888777665 4443 378889998774321 0 1
Q ss_pred CCCCEEEEcCCCCC
Q 009708 405 VKCDKVLLDAPCSG 418 (528)
Q Consensus 405 ~~fD~Vl~D~Pcsg 418 (528)
+..|.++.++-...
T Consensus 79 g~id~li~~Ag~~~ 92 (235)
T 3l77_A 79 GDVDVVVANAGLGY 92 (235)
T ss_dssp SSCSEEEECCCCCC
T ss_pred CCCCEEEECCcccc
Confidence 36899998765443
|
| >4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=88.71 E-value=2.2 Score=41.15 Aligned_cols=80 Identities=13% Similarity=0.162 Sum_probs=56.0
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC--------CC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS--------TV 405 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~--------~~ 405 (528)
.|.+||=.|++ |+.+..++..+- .+.+|+.+|.++..++.+.+.+...+. .+.++.+|+.+..... .+
T Consensus 32 ~gk~~lVTGas-~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~~~~~~~~~~~~g 108 (275)
T 4imr_A 32 RGRTALVTGSS-RGIGAAIAEGLAGAGAHVILHGVKPGSTAAVQQRIIASGG--TAQELAGDLSEAGAGTDLIERAEAIA 108 (275)
T ss_dssp TTCEEEETTCS-SHHHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHHHHTTC--CEEEEECCTTSTTHHHHHHHHHHHHS
T ss_pred CCCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCC--eEEEEEecCCCHHHHHHHHHHHHHhC
Confidence 36678877755 667776666542 356899999999988888887777654 3788899987642210 14
Q ss_pred CCCEEEEcCCCC
Q 009708 406 KCDKVLLDAPCS 417 (528)
Q Consensus 406 ~fD~Vl~D~Pcs 417 (528)
..|.++.++-..
T Consensus 109 ~iD~lvnnAg~~ 120 (275)
T 4imr_A 109 PVDILVINASAQ 120 (275)
T ss_dssp CCCEEEECCCCC
T ss_pred CCCEEEECCCCC
Confidence 789999876543
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=88.61 E-value=3.6 Score=39.73 Aligned_cols=78 Identities=17% Similarity=0.093 Sum_probs=51.2
Q ss_pred CCCeEEEeCCccchHHHHHHHHc-CCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCL-SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~-~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
.|.+||=.|++ |+.+.+++..+ ..+.+|+.+|.++..++.+.+.+ +. .+.++.+|+.+.... ..
T Consensus 28 ~gk~vlVTGas-~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~---~~--~~~~~~~Dv~d~~~v~~~~~~~~~~~ 101 (277)
T 3gvc_A 28 AGKVAIVTGAG-AGIGLAVARRLADEGCHVLCADIDGDAADAAATKI---GC--GAAACRVDVSDEQQIIAMVDACVAAF 101 (277)
T ss_dssp TTCEEEETTTT-STHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH---CS--SCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc---CC--cceEEEecCCCHHHHHHHHHHHHHHc
Confidence 36677777765 55666666544 23568999999998877665544 33 367888898774321 01
Q ss_pred CCCCEEEEcCCCCC
Q 009708 405 VKCDKVLLDAPCSG 418 (528)
Q Consensus 405 ~~fD~Vl~D~Pcsg 418 (528)
+..|.++.++-...
T Consensus 102 g~iD~lvnnAg~~~ 115 (277)
T 3gvc_A 102 GGVDKLVANAGVVH 115 (277)
T ss_dssp SSCCEEEECCCCCC
T ss_pred CCCCEEEECCCCCC
Confidence 46899998765543
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=88.54 E-value=3.7 Score=38.64 Aligned_cols=78 Identities=10% Similarity=0.069 Sum_probs=54.3
Q ss_pred CCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC---------CC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS---------TV 405 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~---------~~ 405 (528)
+.+||=.|+ +|+.+.++++.+- .+.+|++++.++..++.+.+.++..+. .+.++.+|+.+..... .+
T Consensus 13 ~k~vlItGa-sggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~~ 89 (260)
T 3awd_A 13 NRVAIVTGG-AQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRMEGH--DVSSVVMDVTNTESVQNAVRSVHEQEG 89 (260)
T ss_dssp TCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--ceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 567887775 4777877776553 346899999999888777776666553 3788899987643210 13
Q ss_pred CCCEEEEcCCC
Q 009708 406 KCDKVLLDAPC 416 (528)
Q Consensus 406 ~fD~Vl~D~Pc 416 (528)
.+|.|+.++-.
T Consensus 90 ~id~vi~~Ag~ 100 (260)
T 3awd_A 90 RVDILVACAGI 100 (260)
T ss_dssp CCCEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 68999987644
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=88.26 E-value=5.3 Score=37.71 Aligned_cols=80 Identities=19% Similarity=0.064 Sum_probs=53.6
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcc--ccccc---------c
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL--RTFAD---------N 402 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~--~~~~~---------~ 402 (528)
.|.+||=.|++ |+.+..+++.+- .+.+|+.+|.++..++.+.+.+...+.. .+.++..|+ .+... .
T Consensus 11 ~~k~vlVTGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~ 88 (252)
T 3f1l_A 11 NDRIILVTGAS-DGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEETGR-QPQWFILDLLTCTSENCQQLAQRIAV 88 (252)
T ss_dssp TTCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSC-CCEEEECCTTTCCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCC-CceEEEEecccCCHHHHHHHHHHHHH
Confidence 36678877765 566766666542 3568999999999988887777665433 266788888 44211 0
Q ss_pred CCCCCCEEEEcCCC
Q 009708 403 STVKCDKVLLDAPC 416 (528)
Q Consensus 403 ~~~~fD~Vl~D~Pc 416 (528)
..+..|.++.++-.
T Consensus 89 ~~g~id~lv~nAg~ 102 (252)
T 3f1l_A 89 NYPRLDGVLHNAGL 102 (252)
T ss_dssp HCSCCSEEEECCCC
T ss_pred hCCCCCEEEECCcc
Confidence 12478999987654
|
| >3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=88.18 E-value=4.6 Score=38.77 Aligned_cols=84 Identities=14% Similarity=0.027 Sum_probs=55.9
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCC------------hHHHHHHHHHHHHcCCCccEEEEcCccccccc
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDIN------------KGRLRILNETAKLHQVNSVIRTIHADLRTFAD 401 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s------------~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~ 401 (528)
.|.+||=.|++ |+.+.++++.+- .+.+|+.+|.+ ...++.....++..+. .+.++..|+.+...
T Consensus 9 ~~k~~lVTGas-~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~ 85 (281)
T 3s55_A 9 EGKTALITGGA-RGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTGR--RCISAKVDVKDRAA 85 (281)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHH
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCeEEEEeCCccccccccccccHHHHHHHHHHHHhcCC--eEEEEeCCCCCHHH
Confidence 36688888865 566776666542 35689999987 6667766666666664 37888999877432
Q ss_pred c---------CCCCCCEEEEcCCCCCCcc
Q 009708 402 N---------STVKCDKVLLDAPCSGLGV 421 (528)
Q Consensus 402 ~---------~~~~fD~Vl~D~Pcsg~G~ 421 (528)
. ..+..|.++.++-.+..+.
T Consensus 86 v~~~~~~~~~~~g~id~lv~nAg~~~~~~ 114 (281)
T 3s55_A 86 LESFVAEAEDTLGGIDIAITNAGISTIAL 114 (281)
T ss_dssp HHHHHHHHHHHHTCCCEEEECCCCCCCCC
T ss_pred HHHHHHHHHHhcCCCCEEEECCCCCCCCC
Confidence 1 0147999998775544333
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=88.10 E-value=3.3 Score=39.37 Aligned_cols=79 Identities=19% Similarity=0.147 Sum_probs=54.1
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
.|.+||=.|++ |+.+.+++..+- .+.+|+.++.++..++.+.+.++..|. .+.++.+|+.+.... ..
T Consensus 6 ~~k~vlVTGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (262)
T 1zem_A 6 NGKVCLVTGAG-GNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGV--EARSYVCDVTSEEAVIGTVDSVVRDF 82 (262)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTS--CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEecCCCHHHHHHHHHHHHHHh
Confidence 36678877765 567777766543 346899999999888877776665553 377888998764311 01
Q ss_pred CCCCEEEEcCCC
Q 009708 405 VKCDKVLLDAPC 416 (528)
Q Consensus 405 ~~fD~Vl~D~Pc 416 (528)
+.+|.++.++-.
T Consensus 83 g~id~lv~nAg~ 94 (262)
T 1zem_A 83 GKIDFLFNNAGY 94 (262)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 468999987654
|
| >3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A* | Back alignment and structure |
|---|
Probab=88.05 E-value=4.3 Score=38.17 Aligned_cols=83 Identities=17% Similarity=0.030 Sum_probs=54.1
Q ss_pred CCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcC-ChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDI-NKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~-s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
+.+||=.|+ +|+.+.+++..+- .+.+|+.++. ++..++.+.+.++..+.. +.++.+|+.+.... ..
T Consensus 4 ~k~~lVTGa-s~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Dv~d~~~v~~~~~~~~~~~ 80 (246)
T 3osu_A 4 TKSALVTGA-SRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGVD--SFAIQANVADADEVKAMIKEVVSQF 80 (246)
T ss_dssp SCEEEETTC-SSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTSC--EEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCc--EEEEEccCCCHHHHHHHHHHHHHHc
Confidence 456666565 4677777776543 3457888776 667777777777776643 77888998764321 01
Q ss_pred CCCCEEEEcCCCCCCcc
Q 009708 405 VKCDKVLLDAPCSGLGV 421 (528)
Q Consensus 405 ~~fD~Vl~D~Pcsg~G~ 421 (528)
+..|.++.++-....+.
T Consensus 81 g~id~lv~nAg~~~~~~ 97 (246)
T 3osu_A 81 GSLDVLVNNAGITRDNL 97 (246)
T ss_dssp SCCCEEEECCCCCCCCC
T ss_pred CCCCEEEECCCCCCCCC
Confidence 47899998876544333
|
| >2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ... | Back alignment and structure |
|---|
Probab=88.04 E-value=0.81 Score=43.98 Aligned_cols=124 Identities=11% Similarity=0.093 Sum_probs=69.7
Q ss_pred CCCeEEEeCC-ccchHHHHHHHHcC-CCcEEEEEcCChHH-HHHHHHHHHHcCCCccEEEEcCcccccccc---------
Q 009708 335 PGQSIVDCCA-APGGKTLYMASCLS-GQGLVYAIDINKGR-LRILNETAKLHQVNSVIRTIHADLRTFADN--------- 402 (528)
Q Consensus 335 ~g~~VLDl~a-G~G~kt~~la~~~~-~~~~v~avD~s~~~-l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~--------- 402 (528)
.|.+||=.|+ |+|+.+..++..+. .+.+|+.++.++.. ++.+. +..+ ..+.++.+|+.+....
T Consensus 6 ~~k~vlVTGa~~s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~---~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~ 80 (269)
T 2h7i_A 6 DGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRIT---DRLP--AKAPLLELDVQNEEHLASLAGRVTE 80 (269)
T ss_dssp TTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEECSCHHHHHHHH---TTSS--SCCCEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecChHHHHHHHH---HhcC--CCceEEEccCCCHHHHHHHHHHHHH
Confidence 3678898898 48888888877553 34689999998765 23332 2223 2366788888764211
Q ss_pred CCC---CCCEEEEcCCCCCCccccCCchhhccCCHHHHHHH----HHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 403 STV---KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEEL----KILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 403 ~~~---~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l----~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
..+ .+|.++.++-..........| ....+.++.... ..-...+++.+...++++|.+|+.+
T Consensus 81 ~~g~~~~iD~lv~nAg~~~~~~~~~~~--~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is 148 (269)
T 2h7i_A 81 AIGAGNKLDGVVHSIGFMPQTGMGINP--FFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMD 148 (269)
T ss_dssp HHCTTCCEEEEEECCCCCCGGGSTTSC--GGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred HhCCCCCceEEEECCccCccccccccc--cccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCeEEEEc
Confidence 012 789999876432200000000 011233333222 2223346777788877788888654
|
| >1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A | Back alignment and structure |
|---|
Probab=87.98 E-value=4.7 Score=38.16 Aligned_cols=78 Identities=8% Similarity=-0.038 Sum_probs=53.6
Q ss_pred CCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc----------CC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN----------ST 404 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~----------~~ 404 (528)
+.+||=.|+ +|+.+.++++.+- .+.+|++++.++..++.+.+.++..+. .+.++.+|+.+.... ..
T Consensus 14 ~k~vlITGa-sggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~~ 90 (266)
T 1xq1_A 14 AKTVLVTGG-TKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGF--QVTGSVCDASLRPEREKLMQTVSSMFG 90 (266)
T ss_dssp TCEEEETTT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHHHHT
T ss_pred CCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--eeEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 567776665 6777877776553 345899999999888877776666553 377888898764211 01
Q ss_pred CCCCEEEEcCCC
Q 009708 405 VKCDKVLLDAPC 416 (528)
Q Consensus 405 ~~fD~Vl~D~Pc 416 (528)
+.+|.|+.++-.
T Consensus 91 ~~id~li~~Ag~ 102 (266)
T 1xq1_A 91 GKLDILINNLGA 102 (266)
T ss_dssp TCCSEEEEECCC
T ss_pred CCCcEEEECCCC
Confidence 578999987654
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=87.93 E-value=4 Score=39.78 Aligned_cols=81 Identities=19% Similarity=0.142 Sum_probs=55.0
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCC-ccEEEEcCcccccccc---------C
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVN-SVIRTIHADLRTFADN---------S 403 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~-~~i~~~~~D~~~~~~~---------~ 403 (528)
.|.+||=.|+ +|+.+..+++.+- .+.+|+.++.++..++.+.+.+...+.. ..+.++.+|+.+.... .
T Consensus 25 ~~k~vlVTGa-s~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 103 (297)
T 1xhl_A 25 SGKSVIITGS-SNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAK 103 (297)
T ss_dssp TTCEEEETTC-SSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHHHHHHHh
Confidence 3567776665 5677777776553 3468999999999888777777665531 1478888998764321 0
Q ss_pred CCCCCEEEEcCCC
Q 009708 404 TVKCDKVLLDAPC 416 (528)
Q Consensus 404 ~~~fD~Vl~D~Pc 416 (528)
.+.+|.++.++-.
T Consensus 104 ~g~iD~lvnnAG~ 116 (297)
T 1xhl_A 104 FGKIDILVNNAGA 116 (297)
T ss_dssp HSCCCEEEECCCC
T ss_pred cCCCCEEEECCCc
Confidence 1468999987654
|
| >4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A* | Back alignment and structure |
|---|
Probab=87.92 E-value=4.7 Score=38.60 Aligned_cols=83 Identities=12% Similarity=-0.039 Sum_probs=55.7
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcC-ChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------C
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDI-NKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------S 403 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~-s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~ 403 (528)
.|.+||=.|++ |+.+.+++..+- .+.+|+.++. ++..++.+.+.++..+. .+.++.+|+.+.... .
T Consensus 27 ~~k~vlVTGas-~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~D~~d~~~v~~~~~~~~~~ 103 (269)
T 4dmm_A 27 TDRIALVTGAS-RGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAAGG--EAFAVKADVSQESEVEALFAAVIER 103 (269)
T ss_dssp TTCEEEETTCS-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCC--cEEEEECCCCCHHHHHHHHHHHHHH
Confidence 36677777755 667777666543 3458888888 77788877777777654 377888998874321 0
Q ss_pred CCCCCEEEEcCCCCCCc
Q 009708 404 TVKCDKVLLDAPCSGLG 420 (528)
Q Consensus 404 ~~~fD~Vl~D~Pcsg~G 420 (528)
.+..|.++.++-....+
T Consensus 104 ~g~id~lv~nAg~~~~~ 120 (269)
T 4dmm_A 104 WGRLDVLVNNAGITRDT 120 (269)
T ss_dssp HSCCCEEEECCCCCCCC
T ss_pred cCCCCEEEECCCCCCCC
Confidence 14789999887554433
|
| >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* | Back alignment and structure |
|---|
Probab=87.85 E-value=6.5 Score=37.92 Aligned_cols=79 Identities=15% Similarity=0.032 Sum_probs=53.6
Q ss_pred CCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHc-CCCccEEEEcCcccccccc---------CC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLH-QVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~-g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
|.+||=.|+ +|+.+.+++..+- .+.+|++++.++..++.+.+.+... +. .+.++.+|+.+.... ..
T Consensus 26 ~k~vlITGa-sggiG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~ 102 (302)
T 1w6u_A 26 GKVAFITGG-GTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGN--KVHAIQCDVRDPDMVQNTVSELIKVA 102 (302)
T ss_dssp TCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSS--CEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCC--ceEEEEeCCCCHHHHHHHHHHHHHHc
Confidence 567877775 4677777776553 3468999999998887766665543 42 378889998764210 12
Q ss_pred CCCCEEEEcCCCC
Q 009708 405 VKCDKVLLDAPCS 417 (528)
Q Consensus 405 ~~fD~Vl~D~Pcs 417 (528)
+.+|.|+.++-..
T Consensus 103 g~id~li~~Ag~~ 115 (302)
T 1w6u_A 103 GHPNIVINNAAGN 115 (302)
T ss_dssp CSCSEEEECCCCC
T ss_pred CCCCEEEECCCCC
Confidence 4689999876543
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=87.81 E-value=4.4 Score=37.91 Aligned_cols=79 Identities=16% Similarity=0.073 Sum_probs=54.9
Q ss_pred CCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC---------CC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS---------TV 405 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~---------~~ 405 (528)
+.+||=.| |+|+.+.++++.+- .+.+|++++.++..++.+.+.++..+. .+.++.+|+.+..... .+
T Consensus 11 ~~~vlVtG-asggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~~ 87 (255)
T 1fmc_A 11 GKCAIITG-AGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGG--QAFACRCDITSEQELSALADFAISKLG 87 (255)
T ss_dssp TCEEEETT-TTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCEEEEEC-CccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhCC--ceEEEEcCCCCHHHHHHHHHHHHHhcC
Confidence 56777666 46788888877653 345899999999888877777766553 3778889987643210 13
Q ss_pred CCCEEEEcCCCC
Q 009708 406 KCDKVLLDAPCS 417 (528)
Q Consensus 406 ~fD~Vl~D~Pcs 417 (528)
.+|.|+.++-..
T Consensus 88 ~~d~vi~~Ag~~ 99 (255)
T 1fmc_A 88 KVDILVNNAGGG 99 (255)
T ss_dssp SCCEEEECCCCC
T ss_pred CCCEEEECCCCC
Confidence 689999876543
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=87.80 E-value=0.28 Score=49.41 Aligned_cols=95 Identities=12% Similarity=-0.032 Sum_probs=53.9
Q ss_pred CCC-CeEEEeCCccch---HHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC--CCCC
Q 009708 334 QPG-QSIVDCCAAPGG---KTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS--TVKC 407 (528)
Q Consensus 334 ~~g-~~VLDl~aG~G~---kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~--~~~f 407 (528)
++| ++|| +..|+|+ .++++|+.+ +.+|+++|.++++++.++ .+|.+..+.....|........ ...+
T Consensus 162 ~~g~~~vl-i~gg~g~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~----~~Ga~~~~~~~~~~~~~~v~~~~~~~g~ 234 (349)
T 3pi7_A 162 QEGEKAFV-MTAGASQLCKLIIGLAKEE--GFRPIVTVRRDEQIALLK----DIGAAHVLNEKAPDFEATLREVMKAEQP 234 (349)
T ss_dssp HHCCSEEE-ESSTTSHHHHHHHHHHHHH--TCEEEEEESCGGGHHHHH----HHTCSEEEETTSTTHHHHHHHHHHHHCC
T ss_pred hCCCCEEE-EeCCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHH----HcCCCEEEECCcHHHHHHHHHHhcCCCC
Confidence 456 4555 4444444 445566554 359999999999988775 4576532211111211111100 1369
Q ss_pred CEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 408 DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 408 D~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
|+|+- |.|.. .+..+++.|++||+++..
T Consensus 235 D~vid---~~g~~--------------------------~~~~~~~~l~~~G~iv~~ 262 (349)
T 3pi7_A 235 RIFLD---AVTGP--------------------------LASAIFNAMPKRARWIIY 262 (349)
T ss_dssp CEEEE---SSCHH--------------------------HHHHHHHHSCTTCEEEEC
T ss_pred cEEEE---CCCCh--------------------------hHHHHHhhhcCCCEEEEE
Confidence 98874 43311 145678889999999864
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=87.79 E-value=4.9 Score=38.10 Aligned_cols=79 Identities=18% Similarity=0.127 Sum_probs=53.1
Q ss_pred CCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHc-CCCccEEEEcCcccccccc---------CC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLH-QVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~-g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
|.+||=.|++ |+.+.++++.+- .+.+|++++.++..++.+.+.+... +. .+.++.+|+.+.... ..
T Consensus 7 ~k~vlVTGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~ 83 (263)
T 3ai3_A 7 GKVAVITGSS-SGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKFGV--RVLEVAVDVATPEGVDAVVESVRSSF 83 (263)
T ss_dssp TCEEEEESCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCC--CEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCC-chHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhcCC--ceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 5677877755 667777776543 3458999999998887766655543 43 377888998764311 01
Q ss_pred CCCCEEEEcCCCC
Q 009708 405 VKCDKVLLDAPCS 417 (528)
Q Consensus 405 ~~fD~Vl~D~Pcs 417 (528)
+..|.++.++-..
T Consensus 84 g~id~lv~~Ag~~ 96 (263)
T 3ai3_A 84 GGADILVNNAGTG 96 (263)
T ss_dssp SSCSEEEECCCCC
T ss_pred CCCCEEEECCCCC
Confidence 3689999876543
|
| >2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=87.67 E-value=5.1 Score=38.54 Aligned_cols=80 Identities=13% Similarity=0.029 Sum_probs=55.2
Q ss_pred CCeEEEeCCccchHHHHHHHHcCC-CcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 405 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~~-~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~~ 405 (528)
+.+||=.|++ |+.+..++..+-. +.+|++++.++..++.+.+.++..+. .+.++.+|+.+.... ..+
T Consensus 44 ~k~vlITGas-ggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dl~d~~~v~~~~~~~~~~~~ 120 (285)
T 2c07_A 44 NKVALVTGAG-RGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGY--ESSGYAGDVSKKEEISEVINKILTEHK 120 (285)
T ss_dssp SCEEEEESTT-SHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTC--CEEEEECCTTCHHHHHHHHHHHHHHCS
T ss_pred CCEEEEECCC-cHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCC--ceeEEECCCCCHHHHHHHHHHHHHhcC
Confidence 5678877755 7788888876643 45899999998888777666665543 377888998764221 124
Q ss_pred CCCEEEEcCCCCC
Q 009708 406 KCDKVLLDAPCSG 418 (528)
Q Consensus 406 ~fD~Vl~D~Pcsg 418 (528)
.+|.|+.++-...
T Consensus 121 ~id~li~~Ag~~~ 133 (285)
T 2c07_A 121 NVDILVNNAGITR 133 (285)
T ss_dssp CCCEEEECCCCCC
T ss_pred CCCEEEECCCCCC
Confidence 6899998765443
|
| >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* | Back alignment and structure |
|---|
Probab=87.66 E-value=3.6 Score=38.78 Aligned_cols=79 Identities=16% Similarity=0.048 Sum_probs=53.2
Q ss_pred CCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcC-ChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDI-NKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~-s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
+.+||=.|+ +|+.+.+++..+- .+.+|++++. ++..++.+.+.++..+. .+.++.+|+.+.... ..
T Consensus 7 ~k~vlITGa-sggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~ 83 (261)
T 1gee_A 7 GKVVVITGS-STGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGG--EAIAVKGDVTVESDVINLVQSAIKEF 83 (261)
T ss_dssp TCEEEETTC-SSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC--EEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHhcCC--ceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 567776665 5777877776542 3468999999 88877777666665543 477888998764311 01
Q ss_pred CCCCEEEEcCCCC
Q 009708 405 VKCDKVLLDAPCS 417 (528)
Q Consensus 405 ~~fD~Vl~D~Pcs 417 (528)
+.+|.|+.++-..
T Consensus 84 g~id~li~~Ag~~ 96 (261)
T 1gee_A 84 GKLDVMINNAGLE 96 (261)
T ss_dssp SCCCEEEECCCCC
T ss_pred CCCCEEEECCCCC
Confidence 3689999876543
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=87.61 E-value=4.8 Score=38.74 Aligned_cols=121 Identities=12% Similarity=0.078 Sum_probs=68.0
Q ss_pred CCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 405 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~~ 405 (528)
|.+||=.|++ |+.+.+++..+- .+.+|+.+|.++..++.+.+. .+. .+.++..|+.+.... ..+
T Consensus 27 ~k~vlVTGas-~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~---~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~~g 100 (277)
T 4dqx_A 27 QRVCIVTGGG-SGIGRATAELFAKNGAYVVVADVNEDAAVRVANE---IGS--KAFGVRVDVSSAKDAESMVEKTTAKWG 100 (277)
T ss_dssp TCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH---HCT--TEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH---hCC--ceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 6678877765 566776666542 346899999998877665543 332 377888998764321 014
Q ss_pred CCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcC--CCEEEEEc
Q 009708 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKP--GGVLVYST 465 (528)
Q Consensus 406 ~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~Lkp--GG~LvysT 465 (528)
..|.++.++-....+.+...+.-.|. ..+.....-...+++.+...++. +|.+|+.+
T Consensus 101 ~iD~lv~nAg~~~~~~~~~~~~~~~~---~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~is 159 (277)
T 4dqx_A 101 RVDVLVNNAGFGTTGNVVTIPEETWD---RIMSVNVKGIFLCSKYVIPVMRRNGGGSIINTT 159 (277)
T ss_dssp CCCEEEECCCCCCCBCTTTSCHHHHH---HHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEEC
T ss_pred CCCEEEECCCcCCCCCcccCCHHHHH---HHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEEC
Confidence 78999987765443333322222221 01111111222345555555543 56777654
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=87.61 E-value=5.7 Score=37.72 Aligned_cols=80 Identities=14% Similarity=0.057 Sum_probs=53.4
Q ss_pred CCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 405 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~~ 405 (528)
|.+||=.|++ |+.+.+++..+- .+.+|+.++.++..++.+.+.+........+.++.+|+.+.... ..+
T Consensus 13 ~k~vlVTGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g 91 (267)
T 1iy8_A 13 DRVVLITGGG-SGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERFG 91 (267)
T ss_dssp TCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 6678877764 677777766543 34689999999988887766665541112377888998764321 013
Q ss_pred CCCEEEEcCCC
Q 009708 406 KCDKVLLDAPC 416 (528)
Q Consensus 406 ~fD~Vl~D~Pc 416 (528)
.+|.++.++-.
T Consensus 92 ~id~lv~nAg~ 102 (267)
T 1iy8_A 92 RIDGFFNNAGI 102 (267)
T ss_dssp CCSEEEECCCC
T ss_pred CCCEEEECCCc
Confidence 68999987644
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=87.53 E-value=3.3 Score=39.56 Aligned_cols=118 Identities=17% Similarity=0.062 Sum_probs=66.4
Q ss_pred CCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 405 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~~ 405 (528)
+.+||=.|++ |+.+.++++.+- .+.+|+.++.++..++.+.+ ..+ ..+.++.+|+.+.... ..+
T Consensus 6 ~k~vlITGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~---~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~~g 79 (263)
T 2a4k_A 6 GKTILVTGAA-SGIGRAALDLFAREGASLVAVDREERLLAEAVA---ALE--AEAIAVVADVSDPKAVEAVFAEALEEFG 79 (263)
T ss_dssp TCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH---TCC--SSEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH---Hhc--CceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 5677777764 667777766543 34589999999887665443 222 3477888998764311 014
Q ss_pred CCCEEEEcCCCCCCccccCCchhhccCCHHHHHHH----HHHHHHHHHHHhccCcCCCEEEEEcC
Q 009708 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEEL----KILQDELLDAASLLVKPGGVLVYSTC 466 (528)
Q Consensus 406 ~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l----~~~q~~lL~~a~~~LkpGG~LvysTc 466 (528)
..|.++.++-....+.+.. .+.++.... ..-...+++.+...++.+|.+|+.+.
T Consensus 80 ~iD~lvnnAg~~~~~~~~~-------~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS 137 (263)
T 2a4k_A 80 RLHGVAHFAGVAHSALSWN-------LPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGS 137 (263)
T ss_dssp CCCEEEEGGGGTTTTC-----------CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred CCcEEEECCCCCCCCChhh-------CCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 6899998765433222211 222222221 11223345556665554788876543
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=87.43 E-value=3.1 Score=39.40 Aligned_cols=85 Identities=14% Similarity=0.012 Sum_probs=56.4
Q ss_pred CCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCC-ccEEEEcCcccccccc---------CC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVN-SVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~-~~i~~~~~D~~~~~~~---------~~ 404 (528)
+.++|=.|++ |+.+..+++.+- .+.+|+.++.++..++.+.+.+...+-. ..+.++.+|+.+.... ..
T Consensus 7 ~k~~lVTGas-~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 85 (250)
T 3nyw_A 7 KGLAIITGAS-QGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQKY 85 (250)
T ss_dssp CCEEEEESTT-SHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHHhc
Confidence 5677877766 566666665442 2468999999999998888777665221 2477888998874321 01
Q ss_pred CCCCEEEEcCCCCCCcc
Q 009708 405 VKCDKVLLDAPCSGLGV 421 (528)
Q Consensus 405 ~~fD~Vl~D~Pcsg~G~ 421 (528)
+..|.++.++-....+.
T Consensus 86 g~iD~lvnnAg~~~~~~ 102 (250)
T 3nyw_A 86 GAVDILVNAAAMFMDGS 102 (250)
T ss_dssp CCEEEEEECCCCCCCCC
T ss_pred CCCCEEEECCCcCCCCC
Confidence 46899998765544333
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=87.38 E-value=2.5 Score=40.89 Aligned_cols=80 Identities=15% Similarity=0.058 Sum_probs=54.2
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
.|.+||=.|++ |+.+.++++.+- .+.+|+.+|.++..++.+.+.+...+-. .+.++.+|+.+.... ..
T Consensus 32 ~gk~~lVTGas-~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~ 109 (281)
T 4dry_A 32 EGRIALVTGGG-TGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIGGRTGN-IVRAVVCDVGDPDQVAALFAAVRAEF 109 (281)
T ss_dssp --CEEEETTTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSS-CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCC-eEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 36677777755 677777776552 3568999999999988877777655433 357888998774321 02
Q ss_pred CCCCEEEEcCCC
Q 009708 405 VKCDKVLLDAPC 416 (528)
Q Consensus 405 ~~fD~Vl~D~Pc 416 (528)
+..|.++.++-.
T Consensus 110 g~iD~lvnnAG~ 121 (281)
T 4dry_A 110 ARLDLLVNNAGS 121 (281)
T ss_dssp SCCSEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 478999987654
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=87.29 E-value=2.8 Score=40.48 Aligned_cols=79 Identities=13% Similarity=0.030 Sum_probs=53.9
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcC-ChHHHHHHHHHHHHcCCCccEEEEcCccccccccC---------
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDI-NKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS--------- 403 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~-s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~--------- 403 (528)
.+.+||=.|++ |+.+.++++.+- .+.+|+.+|. ++..++.+.+.+...|. .+.++.+|+.+.....
T Consensus 28 ~~k~~lVTGas-~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~ 104 (280)
T 4da9_A 28 ARPVAIVTGGR-RGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELSGLGA--RVIFLRADLADLSSHQATVDAVVAE 104 (280)
T ss_dssp CCCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHTTC--CEEEEECCTTSGGGHHHHHHHHHHH
T ss_pred CCCEEEEecCC-CHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcCC--cEEEEEecCCCHHHHHHHHHHHHHH
Confidence 46678877765 566666665542 3468999985 78888877777776664 3788999998753210
Q ss_pred CCCCCEEEEcCCC
Q 009708 404 TVKCDKVLLDAPC 416 (528)
Q Consensus 404 ~~~fD~Vl~D~Pc 416 (528)
.+..|.++.++-.
T Consensus 105 ~g~iD~lvnnAg~ 117 (280)
T 4da9_A 105 FGRIDCLVNNAGI 117 (280)
T ss_dssp HSCCCEEEEECC-
T ss_pred cCCCCEEEECCCc
Confidence 1478999987654
|
| >3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=87.03 E-value=2.5 Score=40.95 Aligned_cols=79 Identities=15% Similarity=0.009 Sum_probs=54.5
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
.|.+||=.|++ |+.+..++..+- .+.+|+.+|.++..++.+.+.+...+. .+.++.+|+.+.... ..
T Consensus 7 ~gk~vlVTGas-~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~~~ 83 (280)
T 3tox_A 7 EGKIAIVTGAS-SGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAGGGG--EAAALAGDVGDEALHEALVELAVRRF 83 (280)
T ss_dssp TTCEEEESSTT-SHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHTTTTC--CEEECCCCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 36677777765 566766665542 356899999999998887777655443 478889998874321 01
Q ss_pred CCCCEEEEcCCC
Q 009708 405 VKCDKVLLDAPC 416 (528)
Q Consensus 405 ~~fD~Vl~D~Pc 416 (528)
+..|.++.++-.
T Consensus 84 g~iD~lvnnAg~ 95 (280)
T 3tox_A 84 GGLDTAFNNAGA 95 (280)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 468999987654
|
| >2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=86.89 E-value=3.4 Score=38.50 Aligned_cols=78 Identities=15% Similarity=0.098 Sum_probs=51.9
Q ss_pred CCeEEEeCCccchHHHHHHHHcCC-Cc-------EEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc-----
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLSG-QG-------LVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN----- 402 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~~-~~-------~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~----- 402 (528)
+.+||=.|+ +|+.+.+++..+-. +. +|++++.++..++.+...+...+ ..+.++.+|+.+....
T Consensus 2 ~k~vlITGa-sggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~ 78 (244)
T 2bd0_A 2 KHILLITGA-GKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEG--ALTDTITADISDMADVRRLTT 78 (244)
T ss_dssp CEEEEEETT-TSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTT--CEEEEEECCTTSHHHHHHHHH
T ss_pred CCEEEEECC-CChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHHHHHHHccC--CeeeEEEecCCCHHHHHHHHH
Confidence 345665664 57777777765432 23 79999999988887776665544 2478889998764211
Q ss_pred ----CCCCCCEEEEcCCC
Q 009708 403 ----STVKCDKVLLDAPC 416 (528)
Q Consensus 403 ----~~~~fD~Vl~D~Pc 416 (528)
..+.+|.|+.++-.
T Consensus 79 ~~~~~~g~id~li~~Ag~ 96 (244)
T 2bd0_A 79 HIVERYGHIDCLVNNAGV 96 (244)
T ss_dssp HHHHHTSCCSEEEECCCC
T ss_pred HHHHhCCCCCEEEEcCCc
Confidence 02468999987644
|
| >1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=86.64 E-value=4.1 Score=39.15 Aligned_cols=82 Identities=15% Similarity=0.093 Sum_probs=54.6
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCC-ccEEEEcCcccccccc---------C
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVN-SVIRTIHADLRTFADN---------S 403 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~-~~i~~~~~D~~~~~~~---------~ 403 (528)
.|.+||=.|+ +|+.+.+++..+- .+.+|+.++.++..++.+.+.+...+.. ..+.++.+|+.+.... .
T Consensus 5 ~~k~vlVTGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 83 (280)
T 1xkq_A 5 SNKTVIITGS-SNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQ 83 (280)
T ss_dssp TTCEEEETTC-SSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCCHHHHHHHHHHHHHh
Confidence 3567777775 4667777766543 3468999999999888777666654431 1478889998764311 0
Q ss_pred CCCCCEEEEcCCCC
Q 009708 404 TVKCDKVLLDAPCS 417 (528)
Q Consensus 404 ~~~fD~Vl~D~Pcs 417 (528)
.+.+|.++.++-..
T Consensus 84 ~g~iD~lv~nAg~~ 97 (280)
T 1xkq_A 84 FGKIDVLVNNAGAA 97 (280)
T ss_dssp HSCCCEEEECCCCC
T ss_pred cCCCCEEEECCCCC
Confidence 14689999876543
|
| >2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=86.63 E-value=5.5 Score=37.33 Aligned_cols=79 Identities=16% Similarity=0.062 Sum_probs=53.2
Q ss_pred CCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcC-ChHHHHHHHHHHHHcCCCccEEEEcCccccccccC---------C
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDI-NKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS---------T 404 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~-s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~---------~ 404 (528)
|.+||=.|+ +|+.+.++++.+- .+.+|+.++. ++..++.+.+.++..+. .+.++.+|+.+..... .
T Consensus 4 ~k~vlVTGa-s~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (246)
T 2uvd_A 4 GKVALVTGA-SRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKKLGS--DAIAVRADVANAEDVTNMVKQTVDVF 80 (246)
T ss_dssp TCEEEETTC-SSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCC--cEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 556776664 5777777776553 3458999998 88888777776666553 3778888987643210 1
Q ss_pred CCCCEEEEcCCCC
Q 009708 405 VKCDKVLLDAPCS 417 (528)
Q Consensus 405 ~~fD~Vl~D~Pcs 417 (528)
+..|.++.++-..
T Consensus 81 g~id~lv~nAg~~ 93 (246)
T 2uvd_A 81 GQVDILVNNAGVT 93 (246)
T ss_dssp SCCCEEEECCCCC
T ss_pred CCCCEEEECCCCC
Confidence 3689999876543
|
| >2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A* | Back alignment and structure |
|---|
Probab=86.59 E-value=1.8 Score=41.32 Aligned_cols=120 Identities=14% Similarity=0.013 Sum_probs=67.9
Q ss_pred CCeEEEeCCc-cchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC---------C
Q 009708 336 GQSIVDCCAA-PGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS---------T 404 (528)
Q Consensus 336 g~~VLDl~aG-~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~---------~ 404 (528)
+.+||=.|++ +|+.+.++++.+- .+.+|+.++.++..-+.+++..+..+ . +.++.+|+.+..... .
T Consensus 8 ~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~--~-~~~~~~D~~~~~~v~~~~~~~~~~~ 84 (261)
T 2wyu_A 8 GKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALG--G-ALLFRADVTQDEELDALFAGVKEAF 84 (261)
T ss_dssp TCEEEEESCCSSSSHHHHHHHHHHHHTCEEEEEESCGGGHHHHHHHHHHTT--C-CEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--C-cEEEECCCCCHHHHHHHHHHHHHHc
Confidence 6688888886 3777877776542 24689999998762223333323333 2 567888987643210 1
Q ss_pred CCCCEEEEcCCCCCC----ccccCCchhhccCCHHHHHHH----HHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 405 VKCDKVLLDAPCSGL----GVLSKRADLRWNRRLEDMEEL----KILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 405 ~~fD~Vl~D~Pcsg~----G~~~~~pd~~~~~~~~~~~~l----~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
+..|.++.++-.... +.+. ..+.++.... ..-...+++.+...++.+|++|+.+
T Consensus 85 g~iD~lv~~Ag~~~~~~~~~~~~-------~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is 146 (261)
T 2wyu_A 85 GGLDYLVHAIAFAPREAMEGRYI-------DTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLT 146 (261)
T ss_dssp SSEEEEEECCCCCCHHHHSSCGG-------GCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEE
T ss_pred CCCCEEEECCCCCCcccCCCCcc-------cCCHHHHHHHHHHhhHHHHHHHHHHHHHhccCCEEEEEe
Confidence 368999987654321 1111 1222332222 1223346677777776678888654
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* | Back alignment and structure |
|---|
Probab=86.46 E-value=4.4 Score=38.18 Aligned_cols=78 Identities=22% Similarity=0.148 Sum_probs=52.0
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
.|.+||=.|++ |+.+..+++.+- .+.+|+.+|.++..++.+...+ +. .+.++.+|+.+.... ..
T Consensus 5 ~gk~vlVTGas-~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---~~--~~~~~~~Dv~~~~~v~~~~~~~~~~~ 78 (247)
T 3rwb_A 5 AGKTALVTGAA-QGIGKAIAARLAADGATVIVSDINAEGAKAAAASI---GK--KARAIAADISDPGSVKALFAEIQALT 78 (247)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH---CT--TEEECCCCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---CC--ceEEEEcCCCCHHHHHHHHHHHHHHC
Confidence 36678877765 566766666542 3568999999998877665443 32 478889998764321 01
Q ss_pred CCCCEEEEcCCCCC
Q 009708 405 VKCDKVLLDAPCSG 418 (528)
Q Consensus 405 ~~fD~Vl~D~Pcsg 418 (528)
+..|.++.++-...
T Consensus 79 g~id~lv~nAg~~~ 92 (247)
T 3rwb_A 79 GGIDILVNNASIVP 92 (247)
T ss_dssp SCCSEEEECCCCCC
T ss_pred CCCCEEEECCCCCC
Confidence 46899998765543
|
| >4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* | Back alignment and structure |
|---|
Probab=86.31 E-value=5.9 Score=38.02 Aligned_cols=79 Identities=9% Similarity=-0.071 Sum_probs=53.7
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHH-cCCCccEEEEcCcccccccc---------C
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKL-HQVNSVIRTIHADLRTFADN---------S 403 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~-~g~~~~i~~~~~D~~~~~~~---------~ 403 (528)
.|.+||=.|++ |+.+.++++.+- .+.+|+.++.+...++.+...+.. .+. .+.++.+|+.+.... .
T Consensus 26 ~~k~~lVTGas-~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~~ 102 (277)
T 4fc7_A 26 RDKVAFITGGG-SGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGATGR--RCLPLSMDVRAPPAVMAAVDQALKE 102 (277)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHHSS--CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCC--cEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 36678877765 567777776553 345899999999887766665543 343 378889998764221 0
Q ss_pred CCCCCEEEEcCCC
Q 009708 404 TVKCDKVLLDAPC 416 (528)
Q Consensus 404 ~~~fD~Vl~D~Pc 416 (528)
.+..|.++.++-.
T Consensus 103 ~g~id~lv~nAg~ 115 (277)
T 4fc7_A 103 FGRIDILINCAAG 115 (277)
T ss_dssp HSCCCEEEECCCC
T ss_pred cCCCCEEEECCcC
Confidence 1478999987654
|
| >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=86.30 E-value=6.2 Score=38.14 Aligned_cols=80 Identities=13% Similarity=0.049 Sum_probs=54.2
Q ss_pred CCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcC---CCccEEEEcCccccccccC--------
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQ---VNSVIRTIHADLRTFADNS-------- 403 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g---~~~~i~~~~~D~~~~~~~~-------- 403 (528)
+.+||=.|+ +|+.+.+++..+- .+.+|+.++.++..++.+.+.++... ....+.++.+|+.+.....
T Consensus 18 ~k~vlVTGa-sggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 96 (303)
T 1yxm_A 18 GQVAIVTGG-ATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKSTLD 96 (303)
T ss_dssp TCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCHHHHHHHHHHHHH
Confidence 567887775 5777877776553 34689999999988887777665521 1124788999987643210
Q ss_pred -CCCCCEEEEcCCC
Q 009708 404 -TVKCDKVLLDAPC 416 (528)
Q Consensus 404 -~~~fD~Vl~D~Pc 416 (528)
.+.+|.|+.++-.
T Consensus 97 ~~g~id~li~~Ag~ 110 (303)
T 1yxm_A 97 TFGKINFLVNNGGG 110 (303)
T ss_dssp HHSCCCEEEECCCC
T ss_pred HcCCCCEEEECCCC
Confidence 1368999987654
|
| >3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=86.23 E-value=4.8 Score=38.80 Aligned_cols=83 Identities=12% Similarity=0.065 Sum_probs=54.9
Q ss_pred CCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcC-ChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDI-NKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~-s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
+.+||=.|++ |+.+.+++..+- .+.+|+.+|. ++..++.+.+.++...- ..+.++.+|+.+.... ..
T Consensus 25 ~k~~lVTGas-~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 102 (281)
T 3v2h_A 25 TKTAVITGST-SGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAGLSS-GTVLHHPADMTKPSEIADMMAMVADRF 102 (281)
T ss_dssp TCEEEEETCS-SHHHHHHHHHHHHTTCEEEEECCCCHHHHHHHHHHHHTTCS-SCEEEECCCTTCHHHHHHHHHHHHHHT
T ss_pred CCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHhhccC-CcEEEEeCCCCCHHHHHHHHHHHHHHC
Confidence 6678888865 566776666542 3468999998 67777777666655422 2478899998764321 12
Q ss_pred CCCCEEEEcCCCCCCc
Q 009708 405 VKCDKVLLDAPCSGLG 420 (528)
Q Consensus 405 ~~fD~Vl~D~Pcsg~G 420 (528)
+..|.++.++-....+
T Consensus 103 g~iD~lv~nAg~~~~~ 118 (281)
T 3v2h_A 103 GGADILVNNAGVQFVE 118 (281)
T ss_dssp SSCSEEEECCCCCCCC
T ss_pred CCCCEEEECCCCCCCC
Confidence 4789999877654433
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=86.11 E-value=5.5 Score=40.49 Aligned_cols=97 Identities=14% Similarity=0.146 Sum_probs=67.3
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCcc-EEEEcCccccccccCCCCCCEEEEc
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSV-IRTIHADLRTFADNSTVKCDKVLLD 413 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~-i~~~~~D~~~~~~~~~~~fD~Vl~D 413 (528)
.+..||.++.+-|..++.++.. .++.+.=|--....++.|++++|+++. +++... .. .....||.|++-
T Consensus 38 ~~~~~~~~~d~~gal~~~~~~~-----~~~~~~ds~~~~~~~~~n~~~~~~~~~~~~~~~~--~~---~~~~~~~~v~~~ 107 (375)
T 4dcm_A 38 IRGPVLILNDAFGALSCALAEH-----KPYSIGDSYISELATRENLRLNGIDESSVKFLDS--TA---DYPQQPGVVLIK 107 (375)
T ss_dssp CCSCEEEECCSSSHHHHHTGGG-----CCEEEESCHHHHHHHHHHHHHTTCCGGGSEEEET--TS---CCCSSCSEEEEE
T ss_pred CCCCEEEECCCCCHHHHhhccC-----CceEEEhHHHHHHHHHHHHHHcCCCccceEeccc--cc---ccccCCCEEEEE
Confidence 4568999999999999988743 345553366666789999999999752 444321 11 224679999987
Q ss_pred CCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 414 APCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 414 ~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
.|-+ ...+ ...|..+...|++|+.|+..
T Consensus 108 lpk~----------------~~~l-------~~~L~~l~~~l~~~~~i~~~ 135 (375)
T 4dcm_A 108 VPKT----------------LALL-------EQQLRALRKVVTSDTRIIAG 135 (375)
T ss_dssp CCSC----------------HHHH-------HHHHHHHHTTCCTTSEEEEE
T ss_pred cCCC----------------HHHH-------HHHHHHHHhhCCCCCEEEEE
Confidence 7752 1222 23488889999999988643
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=86.06 E-value=5.2 Score=37.46 Aligned_cols=79 Identities=18% Similarity=0.122 Sum_probs=51.2
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc-----CCCCC
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-----STVKC 407 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~-----~~~~f 407 (528)
.++.+||=.|++ |+.+.+++..+- .+.+|+.++.++..++.+.+.+. ..+.++.+|..+.... .....
T Consensus 12 ~~~k~vlVTGas-~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~i 85 (249)
T 3f9i_A 12 LTGKTSLITGAS-SGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNALK-----DNYTIEVCNLANKEECSNLISKTSNL 85 (249)
T ss_dssp CTTCEEEETTTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC-----SSEEEEECCTTSHHHHHHHHHTCSCC
T ss_pred CCCCEEEEECCC-ChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhc-----cCccEEEcCCCCHHHHHHHHHhcCCC
Confidence 346678877765 667777766543 34689999999988877655442 2477888888764321 12468
Q ss_pred CEEEEcCCCCC
Q 009708 408 DKVLLDAPCSG 418 (528)
Q Consensus 408 D~Vl~D~Pcsg 418 (528)
|.++.++-...
T Consensus 86 d~li~~Ag~~~ 96 (249)
T 3f9i_A 86 DILVCNAGITS 96 (249)
T ss_dssp SEEEECCC---
T ss_pred CEEEECCCCCC
Confidence 99998776543
|
| >1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=85.87 E-value=1.2 Score=44.79 Aligned_cols=52 Identities=13% Similarity=0.240 Sum_probs=37.9
Q ss_pred cCCCCCCeEEEeCCcc-chHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCc
Q 009708 331 VDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS 387 (528)
Q Consensus 331 l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~ 387 (528)
.++++|++||=.|+|+ |..++++|+.+. +.+|+++|.++++++.++ .+|.+.
T Consensus 182 ~~~~~g~~VlV~GaG~vG~~avqlak~~~-Ga~Vi~~~~~~~~~~~~~----~lGa~~ 234 (359)
T 1h2b_A 182 RTLYPGAYVAIVGVGGLGHIAVQLLKVMT-PATVIALDVKEEKLKLAE----RLGADH 234 (359)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHHC-CCEEEEEESSHHHHHHHH----HTTCSE
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHH----HhCCCE
Confidence 5788999999999853 334556666641 248999999999988764 467653
|
| >4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A | Back alignment and structure |
|---|
Probab=85.85 E-value=3.9 Score=39.05 Aligned_cols=81 Identities=16% Similarity=0.034 Sum_probs=54.7
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcC-ChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------C
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDI-NKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------S 403 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~-s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~ 403 (528)
.|.+||=.|++ |+.+.+++..+- .+.+|+.++. ++...+.+.+.++..+.. +.++..|+.+.... .
T Consensus 28 ~~k~vlITGas-~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~~~D~~~~~~v~~~~~~~~~~ 104 (271)
T 4iin_A 28 TGKNVLITGAS-KGIGAEIAKTLASMGLKVWINYRSNAEVADALKNELEEKGYK--AAVIKFDAASESDFIEAIQTIVQS 104 (271)
T ss_dssp SCCEEEETTCS-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCC--EEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCc--eEEEECCCCCHHHHHHHHHHHHHh
Confidence 36678777765 566766666542 3458999888 677777777777776643 78889998764321 0
Q ss_pred CCCCCEEEEcCCCCC
Q 009708 404 TVKCDKVLLDAPCSG 418 (528)
Q Consensus 404 ~~~fD~Vl~D~Pcsg 418 (528)
.+..|.++.++-...
T Consensus 105 ~g~id~li~nAg~~~ 119 (271)
T 4iin_A 105 DGGLSYLVNNAGVVR 119 (271)
T ss_dssp HSSCCEEEECCCCCC
T ss_pred cCCCCEEEECCCcCC
Confidence 247899998765543
|
| >2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=85.84 E-value=3.9 Score=39.40 Aligned_cols=80 Identities=16% Similarity=0.063 Sum_probs=53.8
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
.+.+||=.|++ |+.+..+++.+- .+.+|+.+|.++..++.+.+.+...+ .+.++.+|+.+.... ..
T Consensus 28 ~~k~vlVTGas-~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~Dv~d~~~v~~~~~~~~~~~ 103 (276)
T 2b4q_A 28 AGRIALVTGGS-RGIGQMIAQGLLEAGARVFICARDAEACADTATRLSAYG---DCQAIPADLSSEAGARRLAQALGELS 103 (276)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHTTSS---CEEECCCCTTSHHHHHHHHHHHHHHC
T ss_pred CCCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---ceEEEEeeCCCHHHHHHHHHHHHHhc
Confidence 36678877764 677777766543 34689999999988876666554433 377888998764211 12
Q ss_pred CCCCEEEEcCCCCC
Q 009708 405 VKCDKVLLDAPCSG 418 (528)
Q Consensus 405 ~~fD~Vl~D~Pcsg 418 (528)
+..|.++.++-...
T Consensus 104 g~iD~lvnnAg~~~ 117 (276)
T 2b4q_A 104 ARLDILVNNAGTSW 117 (276)
T ss_dssp SCCSEEEECCCCCC
T ss_pred CCCCEEEECCCCCC
Confidence 47899998765433
|
| >2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* | Back alignment and structure |
|---|
Probab=85.69 E-value=7.6 Score=36.63 Aligned_cols=79 Identities=11% Similarity=0.048 Sum_probs=53.4
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
.|.+||=.|+ +|+.+.+++..+- .+.+|+.++.++..++.+.+.++..+. .+.++.+|+.+.... ..
T Consensus 13 ~~k~vlVTGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~ 89 (260)
T 2zat_A 13 ENKVALVTAS-TDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEGL--SVTGTVCHVGKAEDRERLVAMAVNLH 89 (260)
T ss_dssp TTCEEEESSC-SSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--ceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 3567776665 5677777776543 345899999999888777766666553 367788888764211 01
Q ss_pred CCCCEEEEcCCC
Q 009708 405 VKCDKVLLDAPC 416 (528)
Q Consensus 405 ~~fD~Vl~D~Pc 416 (528)
+..|.++.++-.
T Consensus 90 g~iD~lv~~Ag~ 101 (260)
T 2zat_A 90 GGVDILVSNAAV 101 (260)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 468999987654
|
| >1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=85.68 E-value=4.5 Score=38.25 Aligned_cols=77 Identities=22% Similarity=0.210 Sum_probs=50.5
Q ss_pred CCeEEEeCCccchHHHHHHHHcCC-C---cEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC--------
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLSG-Q---GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS-------- 403 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~~-~---~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~-------- 403 (528)
+.+||=.|+ +|+.+.++++.+-. + .+|++++.++..++.+++..+. + ..+.++.+|+.+.....
T Consensus 21 ~k~vlITGa-sggIG~~la~~L~~~G~~~~~V~~~~r~~~~~~~~~~l~~~-~--~~~~~~~~Dl~~~~~v~~~~~~~~~ 96 (267)
T 1sny_A 21 MNSILITGC-NRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKN-H--SNIHILEIDLRNFDAYDKLVADIEG 96 (267)
T ss_dssp CSEEEESCC-SSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHHH-C--TTEEEEECCTTCGGGHHHHHHHHHH
T ss_pred CCEEEEECC-CCcHHHHHHHHHHhcCCCCcEEEEEecChhhhHHHHHhhcc-C--CceEEEEecCCChHHHHHHHHHHHH
Confidence 557777765 57888888876643 3 5899999988766655443333 2 24788899987643210
Q ss_pred -CC--CCCEEEEcCCC
Q 009708 404 -TV--KCDKVLLDAPC 416 (528)
Q Consensus 404 -~~--~fD~Vl~D~Pc 416 (528)
.+ .+|.|+.++-.
T Consensus 97 ~~g~~~id~li~~Ag~ 112 (267)
T 1sny_A 97 VTKDQGLNVLFNNAGI 112 (267)
T ss_dssp HHGGGCCSEEEECCCC
T ss_pred hcCCCCccEEEECCCc
Confidence 01 68999987644
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=85.64 E-value=3.9 Score=39.42 Aligned_cols=81 Identities=15% Similarity=-0.025 Sum_probs=56.9
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccc-ccc---------C
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF-ADN---------S 403 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~-~~~---------~ 403 (528)
.+.+||=.|++ ||++.+++..+- .+.+|+.++.++..++.+.+.++..+-. .+.++..|+.+. ... .
T Consensus 11 ~~k~vlITGas-~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~Dl~~~~~~v~~~~~~~~~~ 88 (311)
T 3o26_A 11 KRRCAVVTGGN-KGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSNHE-NVVFHQLDVTDPIATMSSLADFIKTH 88 (311)
T ss_dssp -CCEEEESSCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCC-SEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCcEEEEecCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEccCCCcHHHHHHHHHHHHHh
Confidence 35677766655 677777776552 3568999999999988887777766544 488899999875 210 0
Q ss_pred CCCCCEEEEcCCCC
Q 009708 404 TVKCDKVLLDAPCS 417 (528)
Q Consensus 404 ~~~fD~Vl~D~Pcs 417 (528)
.+..|.++.++-..
T Consensus 89 ~g~iD~lv~nAg~~ 102 (311)
T 3o26_A 89 FGKLDILVNNAGVA 102 (311)
T ss_dssp HSSCCEEEECCCCC
T ss_pred CCCCCEEEECCccc
Confidence 24799999876554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 528 | ||||
| d1sqga2 | 284 | c.66.1.38 (A:145-428) Ribosomal RNA small subunit | 1e-42 | |
| d1ixka_ | 313 | c.66.1.38 (A:) Hypothetical methyltransferase PH13 | 4e-40 | |
| d2b9ea1 | 293 | c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) | 1e-26 | |
| d1sqga1 | 140 | a.79.1.3 (A:5-144) Ribosomal RNA small subunit met | 7e-17 | |
| d2as0a2 | 324 | c.66.1.51 (A:73-396) Hypothetical protein PH1915, | 6e-15 | |
| d1eyva_ | 131 | a.79.1.1 (A:) Antitermination factor NusB {Mycobac | 7e-15 | |
| d1tzva_ | 141 | a.79.1.1 (A:) Antitermination factor NusB {Thermot | 2e-12 | |
| d1ey1a_ | 139 | a.79.1.1 (A:) Antitermination factor NusB {Escheri | 2e-11 | |
| d1wxxa2 | 318 | c.66.1.51 (A:65-382) Hypothetical protein TTHA1280 | 3e-11 | |
| d2b78a2 | 317 | c.66.1.51 (A:69-385) Hypothetical protein SMu776, | 2e-08 | |
| d1g8aa_ | 227 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyro | 3e-08 | |
| d1yb2a1 | 250 | c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T | 1e-07 | |
| d1m6ya2 | 192 | c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransf | 2e-07 | |
| d2b25a1 | 324 | c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 | 3e-07 | |
| d2frna1 | 260 | c.66.1.47 (A:19-278) Hypothetical protein PH0793 { | 3e-07 | |
| d1nt2a_ | 209 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Arch | 3e-06 | |
| d1i9ga_ | 264 | c.66.1.13 (A:) Probable methyltransferase Rv2118c | 3e-06 | |
| d1wg8a2 | 182 | c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransf | 2e-05 | |
| d1o54a_ | 266 | c.66.1.13 (A:) Hypothetical protein TM0748 {Thermo | 3e-05 | |
| d1g8sa_ | 230 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Meth | 3e-04 | |
| d2igta1 | 309 | c.66.1.51 (A:1-309) Putative methyltransferase Atu | 5e-04 | |
| d1ri5a_ | 252 | c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf | 6e-04 | |
| d2oyra1 | 250 | c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shi | 8e-04 | |
| d1ej0a_ | 180 | c.66.1.2 (A:) RNA methyltransferase FtsJ {Escheric | 0.002 | |
| d1u2za_ | 406 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 0.003 |
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Score = 151 bits (381), Expect = 1e-42
Identities = 89/298 (29%), Positives = 140/298 (46%), Gaps = 14/298 (4%)
Query: 229 HPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHE 288
HP W+++R K E+ ++ NN P LR N +R + L+ + +
Sbjct: 1 HPSWLLKRLQKAYP-EQWQSIVEANNQRPPMWLRINRTH-HSRDSWLALLD--EAGMKGF 56
Query: 289 LSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGG 348
+ +R++T V ++G VQD SA + + PQ G+ I+D CAAPGG
Sbjct: 57 PHADYPDAVRLETP-APVHALPGFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGG 115
Query: 349 KTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCD 408
KT ++ V A+DI++ RL + + K + + D
Sbjct: 116 KTTHILEVAPEAQ-VVAVDIDEQRLSRVYDNLKRLGMK-ATVKQGDGRYPSQWCGEQQFD 173
Query: 409 KVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 468
++LLDAPCS GV+ + D++W RR D+ EL LQ E+LDA +K GG LVY+TCS+
Sbjct: 174 RILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV 233
Query: 469 DPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLVR 526
PEEN +++AFL R + + + + P DG F A+L++
Sbjct: 234 LPEENSLQIKAFLQRTADAELCETG-------TPEQPGKQNLPGAEEGDGFFYAKLIK 284
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 145 bits (366), Expect = 4e-40
Identities = 90/309 (29%), Positives = 146/309 (47%), Gaps = 17/309 (5%)
Query: 227 YSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVP 286
+ R+ + G E AI++ R N+ K ++ DLV +LN K
Sbjct: 12 LGYSKLFADRYFQLWG-ERAIRIAEAMEKPLPRCFRVNTLK-ISVQDLVKRLN--KKGFQ 67
Query: 287 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 346
+ E + ++ GL +Q+ S+ +DP+PG+ + D AAP
Sbjct: 68 FKRVPWAKEGFCLTREPFSITSTPEFLTGLIYIQEASSMYPPVALDPKPGEIVADMAAAP 127
Query: 347 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVK 406
GGKT Y+A + G++YA D+++ RLR V +VI + L N +
Sbjct: 128 GGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNV--E 185
Query: 407 CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466
DK+LLDAPC+G G + K + +WNR ++D++ + LQ LL+ ++KPGG+LVYSTC
Sbjct: 186 FDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTC 245
Query: 467 SIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSD---------PIKHSLD 517
S++PEENE ++ L + + + P P+ G S+ P H
Sbjct: 246 SLEPEENEFVIQWA-LDNFDVELLPLKYGEPA-LTNPFGIELSEEIKNARRLYPDVHETS 303
Query: 518 GAFAARLVR 526
G F A++ +
Sbjct: 304 GFFIAKIRK 312
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Score = 107 bits (267), Expect = 1e-26
Identities = 70/289 (24%), Positives = 112/289 (38%), Gaps = 25/289 (8%)
Query: 261 LRANSRKGVTRADLVMQLN----------------LLKLQVPHELSLHLDEFIRVKTGLQ 304
+R N+ K D+V L + E +
Sbjct: 6 VRVNTLK-TCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFLLDPLMPELLVFPAQ-T 63
Query: 305 NVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVY 364
++ + L + G +QD ++ L ++DP PG ++D CAAPG KT ++A+ L QG ++
Sbjct: 64 DLHEHPLYRAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIF 123
Query: 365 AIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF-ADNSTVKCDKVLLDAPCSGLGVLS 423
A D++ RL + V+ L +D + +LLD CSG G+ S
Sbjct: 124 AFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILLDPSCSGSGMPS 183
Query: 424 KRADLRWNRRLEDMEELKILQDELLDAASLLVKP-GGVLVYSTCSIDPEENEERVEAFLL 482
++ + + + + L P LVYSTCS+ EENE+ V L
Sbjct: 184 RQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPSLQRLVYSTCSLCQEENEDVVRDALQ 243
Query: 483 RHP-EFSIDPADGLVP----SDFVTKHGFFFSDPIKHSLDGAFAARLVR 526
++P F + PA P S F + P G F A + R
Sbjct: 244 QNPGAFRLAPALPAWPHRGLSTFPGAEHCLRASPETTLSSGFFVAVIER 292
|
| >d1sqga1 a.79.1.3 (A:5-144) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), N-terminal domain {Escherichia coli [TaxId: 562]} Length = 140 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: NusB-like superfamily: NusB-like family: RmsB N-terminal domain-like domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 75.5 bits (185), Expect = 7e-17
Identities = 28/112 (25%), Positives = 54/112 (48%), Gaps = 5/112 (4%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+ + D+D L+ ++ G +R LD LI L + + + + ++ +G Y+++
Sbjct: 30 QKVSDKDKALLQELCFGVLRTLSQLDWLINKLMA--RPMTGKQRTVHYLIMVGLYQLLYT 87
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGND 216
+PP+A + E V A RP L+NG+LR+ + L L + +D
Sbjct: 88 RIPPHAALAETVEGAIAIKRPQLKGLINGVLRQ--FQRQQEEL-LAEFNASD 136
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 324 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 73.8 bits (180), Expect = 6e-15
Identities = 36/179 (20%), Positives = 61/179 (34%), Gaps = 21/179 (11%)
Query: 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH 393
QPG ++D GG ++ ++G V ID + + E AKL+ V ++ I
Sbjct: 144 QPGDRVLDVFTYTGGFAIHA--AIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIV 201
Query: 394 ADLRTF---ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDA 450
K D V+LD P + +D++ + A
Sbjct: 202 GSAFEEMEKLQKKGEKFDIVVLDPPAFV-------------QHEKDLKAGLRAYFNVNFA 248
Query: 451 ASLLVKPGGVLVYSTCS--IDPEENEERV-EAFLLRHPEFSIDPADGLVPSDFVTKHGF 506
LVK GG+LV +CS +D + ++ + A + D
Sbjct: 249 GLNLVKDGGILVTCSCSQHVDLQMFKDMIIAAGAKAGKFLKMLEPYRTQAPDHPILMAS 307
|
| >d1eyva_ a.79.1.1 (A:) Antitermination factor NusB {Mycobacterium tuberculosis [TaxId: 1773]} Length = 131 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: NusB-like superfamily: NusB-like family: Antitermination factor NusB domain: Antitermination factor NusB species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 69.4 bits (169), Expect = 7e-15
Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 2/104 (1%)
Query: 97 ERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRI 156
R K R + G ++D LI T + + ILR+
Sbjct: 29 TRAALAEAKPDIARLHPYTAAVARGVSEHAAHIDDLITAHLRG-WTLDRLPAVDRAILRV 87
Query: 157 GFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLV 199
+E++ +P VVDE V+LAK + VNG+L +++
Sbjct: 88 SVWELLHAADVPEPVVVDEAVQLAKELSTDDSPGFVNGVLGQVM 131
|
| >d1tzva_ a.79.1.1 (A:) Antitermination factor NusB {Thermotoga maritima [TaxId: 2336]} Length = 141 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: NusB-like superfamily: NusB-like family: Antitermination factor NusB domain: Antitermination factor NusB species: Thermotoga maritima [TaxId: 2336]
Score = 62.1 bits (150), Expect = 2e-12
Identities = 20/99 (20%), Positives = 37/99 (37%), Gaps = 2/99 (2%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
+ D + + G +D LI + + + +LR+ YE+
Sbjct: 34 ILDETYDKKAKEDARRYIRGIKENLSMIDDLISRYLEKWS-LNRLSVVDRNVLRLATYEL 92
Query: 162 VKLDMPPYA-VVDENVRLAKVALRPGAGNLVNGILRKLV 199
+ P +DE + +AK +G VNGIL ++
Sbjct: 93 LFEKDIPIEVTIDEAIEIAKRYGTENSGKFVNGILDRIA 131
|
| >d1ey1a_ a.79.1.1 (A:) Antitermination factor NusB {Escherichia coli [TaxId: 562]} Length = 139 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: NusB-like superfamily: NusB-like family: Antitermination factor NusB domain: Antitermination factor NusB species: Escherichia coli [TaxId: 562]
Score = 59.3 bits (143), Expect = 2e-11
Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 3/96 (3%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+D+ D D+ +++ G YLD L+ + + + + +LRI YE+ K
Sbjct: 38 QDVKDVDVLYFRELLAGVATNTAYLDGLMK--PYLSRLLEELGQVEKAVLRIALYELSKR 95
Query: 165 -DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLV 199
D+P ++E + LAK + VNG+L K
Sbjct: 96 SDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAA 131
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Score = 62.2 bits (150), Expect = 3e-11
Identities = 42/189 (22%), Positives = 67/189 (35%), Gaps = 22/189 (11%)
Query: 330 VVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN--S 387
++ G+ +D + GG L++A G V A+D + LR E A+L+ +
Sbjct: 140 YMERFRGERALDVFSYAGGFALHLAL---GFREVVAVDSSAEALRRAEENARLNGLGNVR 196
Query: 388 VIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDEL 447
V+ DL + + D V+LD P G R E+
Sbjct: 197 VLEANAFDLLRRLEKEGERFDLVVLDPPAFAKGKKDVERAYRA-------------YKEV 243
Query: 448 LDAASLLVKPGGVLVYSTCS--IDPEENEERV-EAFLLRHPEFSIDPADGLVPSDFVTKH 504
A L+K GG+L ++CS + V EA H + G P D
Sbjct: 244 NLRAIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQDAHRLLRVVEKRGQ-PFDHPVLL 302
Query: 505 GFFFSDPIK 513
+ +K
Sbjct: 303 NHPETHYLK 311
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} Length = 317 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Score = 53.3 bits (127), Expect = 2e-08
Identities = 16/155 (10%), Positives = 60/155 (38%), Gaps = 21/155 (13%)
Query: 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSV-IRTIH 393
G+++++ + ++ A G ++D+ K + + + ++ + +
Sbjct: 144 AGKTVLNLFSYTAAFSVAAAMG--GAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVV 201
Query: 394 ADLRTF---ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDA 450
D+ + A + D +++D P + R +++ + +L+
Sbjct: 202 MDVFDYFKYARRHHLTYDIIIIDPPS-------------FARNKKEVFSVSKDYHKLIRQ 248
Query: 451 ASLLVKPGGVLVYSTCS--IDPEENEERVEAFLLR 483
++ G+++ ST + + + ++++E +
Sbjct: 249 GLEILSENGLIIASTNAANMTVSQFKKQIEKGFGK 283
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 52.4 bits (125), Expect = 3e-08
Identities = 30/180 (16%), Positives = 57/180 (31%), Gaps = 31/180 (17%)
Query: 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTI 392
+PG+S++ A G +++ + +G ++ I+ + LR L + + I
Sbjct: 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGD 130
Query: 393 HADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAAS 452
+ K D + D L+D A
Sbjct: 131 ATKPEEYRAL-VPKVDVIFEDVAQPT------------------------QAKILIDNAE 165
Query: 453 LLVKPGGVLVYST--CSIDPEENEERVEAFL--LRHPEFSIDPADGLVPSDFVTKHGFFF 508
+ +K GG + + SID + E+V + F + L P + H F
Sbjct: 166 VYLKRGGYGMIAVKSRSIDVTKEPEQVFREVERELSEYFEVIERLNLEP--YEKDHALFV 223
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Score = 50.4 bits (120), Expect = 1e-07
Identities = 19/132 (14%), Positives = 49/132 (37%), Gaps = 2/132 (1%)
Query: 288 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 347
EL + FI + +++ + + A ++ +PG I++ G
Sbjct: 40 ELIVSGKSFIVSDFSPMYFGR--VIRRNTQIISEIDASYIIMRCGLRPGMDILEVGVGSG 97
Query: 348 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC 407
+ Y+ L+G+G + ++ ++ L+ + +RT +D+ F +
Sbjct: 98 NMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQMYDA 157
Query: 408 DKVLLDAPCSGL 419
+ P + +
Sbjct: 158 VIADIPDPWNHV 169
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Score = 49.0 bits (116), Expect = 2e-07
Identities = 34/175 (19%), Positives = 60/175 (34%), Gaps = 19/175 (10%)
Query: 327 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLH-QV 385
V+ + P+ + I+DC GG + + G + ID++ LRI E K
Sbjct: 15 VIEFLKPEDEKIILDCTVGEGGHSRAILEHCPG-CRIIGIDVDSEVLRIAEEKLKEFSDR 73
Query: 386 NSVIRTIHADLRTFADNSTV-KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQ 444
S+ + + + + K D +L+D S +L+
Sbjct: 74 VSLFKVSYREADFLLKTLGIEKVDGILMDLGVS-------------TYQLKGENRELENL 120
Query: 445 DELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSD 499
E L A L+ PGG +V + V+ + I + PS+
Sbjct: 121 KEFLKKAEDLLNPGGRIV---VISFHSLEDRIVKETFRNSKKLRILTEKPVRPSE 172
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.2 bits (119), Expect = 3e-07
Identities = 26/157 (16%), Positives = 58/157 (36%), Gaps = 17/157 (10%)
Query: 311 LLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINK 370
L+K G + ++++++D PG ++++ + GG +L+++ + QG V + ++ K
Sbjct: 74 LMKRGTAITFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRK 133
Query: 371 GRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRW 430
+ + K + + + + + DN + G L +
Sbjct: 134 DHHDLAKKNYKHWRDSWKLSHVEE----WPDNVDFIHKDI--------SGATEDIKSLTF 181
Query: 431 NRRLEDMEELKILQDELLDAASLLVKPGGVLV-YSTC 466
+ DM L +K GGV Y
Sbjct: 182 DAVALDMLN----PHVTLPVFYPHLKHGGVCAVYVVN 214
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Score = 49.8 bits (118), Expect = 3e-07
Identities = 28/147 (19%), Positives = 49/147 (33%), Gaps = 30/147 (20%)
Query: 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH 393
+P + +VD A G +L +A G+ V AI+ + + L E L++V + +
Sbjct: 106 KPDELVVDMFAGIGHLSLPIAVY--GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYN 163
Query: 394 ADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASL 453
D R F D++L+ E + A
Sbjct: 164 MDNRDF--PGENIADRILMGYVVR--------------------------THEFIPKALS 195
Query: 454 LVKPGGVLVYSTCSIDPEENEERVEAF 480
+ K G ++ Y + E E F
Sbjct: 196 IAKDGAIIHYHNTVPEKLMPREPFETF 222
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 45.9 bits (108), Expect = 3e-06
Identities = 23/149 (15%), Positives = 44/149 (29%), Gaps = 24/149 (16%)
Query: 331 VDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIR 390
+ + + ++ AA G ++A + +G++YA++ + L E + N +
Sbjct: 52 LKLRGDERVLYLGAASGTTVSHLAD-IVDEGIIYAVEYSAKPFEKLLELVRERN-NIIPL 109
Query: 391 TIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDA 450
A K D + D + K +
Sbjct: 110 LFDASKPWKYSGIVEKVDLIYQDIAQKNQIEILKANAEFF-------------------- 149
Query: 451 ASLLVKPGGVLVYSTCSIDPEENEERVEA 479
L K V++ SID E V
Sbjct: 150 --LKEKGEVVIMVKARSIDSTAEPEEVFK 176
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 264 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 46.5 bits (110), Expect = 3e-06
Identities = 29/172 (16%), Positives = 49/172 (28%), Gaps = 31/172 (18%)
Query: 311 LLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINK 370
+ G + + A +V D PG +++ A G TL + + G V + +
Sbjct: 72 SMPRGPQVIYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRA 131
Query: 371 GRLRIL--NETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADL 428
N + Q R + +DL + D+ +LD
Sbjct: 132 DHAEHARRNVSGCYGQPPDNWRLVVSDLADS-ELPDGSVDRAVLDMLA------PWEVLD 184
Query: 429 RWNRRLEDMEELKILQDELLDAASLLVKPGGVLV-YSTCSIDPEENEERVEA 479
+R L GGVL+ Y E + A
Sbjct: 185 AVSRLL---------------------VAGGVLMVYVATVTQLSRIVEALRA 215
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} Length = 182 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Score = 43.2 bits (101), Expect = 2e-05
Identities = 38/173 (21%), Positives = 60/173 (34%), Gaps = 21/173 (12%)
Query: 327 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN 386
+ ++ +PG VD G + G V +D + + + L +
Sbjct: 10 ALDLLAVRPGGVYVDATLGGAGHARGILER---GGRVIGLDQDPEAVAR-AKGLHLPGLT 65
Query: 387 SVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDE 446
V R A + D +L D LGV S D + +EL E
Sbjct: 66 VVQGNFRHLKRHLAALGVERVDGILAD-----LGVSSFHLD-------DPSDEL-NALKE 112
Query: 447 LLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSD 499
L+ A+ ++ PGG LV + V+ F LR + LVPS+
Sbjct: 113 FLEQAAEVLAPGGRLVVIAF---HSLEDRVVKRF-LRESGLKVLTKKPLVPSE 161
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Score = 43.6 bits (102), Expect = 3e-05
Identities = 15/105 (14%), Positives = 35/105 (33%)
Query: 311 LLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINK 370
+K V + + + ++D + G I+D G +A + G V+A + +
Sbjct: 79 NMKRRTQIVYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKRE 138
Query: 371 GRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAP 415
++ + + D+ D V + + P
Sbjct: 139 EFAKLAESNLTKWGLIERVTIKVRDISEGFDEKDVDALFLDVPDP 183
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 40.5 bits (94), Expect = 3e-04
Identities = 13/76 (17%), Positives = 28/76 (36%), Gaps = 1/76 (1%)
Query: 328 VAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS 387
+ V+ + I+ A+ G ++A +VYAI+ +R L + +
Sbjct: 67 LKVMPIKRDSKILYLGASAGTTPSHVADIADKG-IVYAIEYAPRIMRELLDACAERENII 125
Query: 388 VIRTIHADLRTFADNS 403
I + +A+
Sbjct: 126 PILGDANKPQEYANIV 141
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Score = 39.8 bits (92), Expect = 5e-04
Identities = 41/264 (15%), Positives = 71/264 (26%), Gaps = 40/264 (15%)
Query: 243 QEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTG 302
+ VW N+D F G+ R K + L L +
Sbjct: 52 WRPLVPDRVWQNADAIF-TGDTDEDGMGRWRF------PKEALGETWPLSLLG-VEFLGR 103
Query: 303 LQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGL 362
G+ E + + L AV +++ G +L +
Sbjct: 104 FTAFRHVGVFPEQIVHWEW----LKNAVETADRPLKVLNLFGYTGVASLV---AAAAGAE 156
Query: 363 VYAIDINKGRLRILNE-TAKLHQVNSVIRTIHADLRTF---ADNSTVKCDKVLLDAPCSG 418
V +D +K + E + IR I D F + D +L D P G
Sbjct: 157 VTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILTDPPKFG 216
Query: 419 LGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS---IDPEENEE 475
G ++ +L +LD ++ P + + T E
Sbjct: 217 RG------------THGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRASFYSMHE 264
Query: 476 RVEAFL------LRHPEFSIDPAD 493
+ + + E I A
Sbjct: 265 LMRETMRGAGGVVASGELVIREAG 288
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Score = 39.5 bits (91), Expect = 6e-04
Identities = 26/182 (14%), Positives = 53/182 (29%), Gaps = 23/182 (12%)
Query: 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH 393
+ G S++D GG L G G Y +DI + + A+ + +
Sbjct: 23 KRGDSVLDLGCGKGGDLLKYERA--GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRA 80
Query: 394 ADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASL 453
D + + D + D +
Sbjct: 81 QDSYGRHMDLGKEFDVI------------------SSQFSFHYAFSTSESLDIAQRNIAR 122
Query: 454 LVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSI-DPADGLVPSDFVTKHGFFFSDPI 512
++PGG + + + ER + + + + I VP + V ++ F D +
Sbjct: 123 HLRPGGYFIMTVP--SRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSV 180
Query: 513 KH 514
+
Sbjct: 181 NN 182
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Score = 38.8 bits (90), Expect = 8e-04
Identities = 23/124 (18%), Positives = 40/124 (32%), Gaps = 7/124 (5%)
Query: 333 PQPGQSIVDCCAAPGGKTLYMAS-----CLSGQGLVYAIDINKGRLRILNETAKLHQVNS 387
+VD A G +AS + + V A ++ G R + +
Sbjct: 86 GDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQE 145
Query: 388 VIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDEL 447
++ IHA T + T + V LD + R + + + D L
Sbjct: 146 RLQLIHASSLTALTDITPRPQVVYLDPMFPHKQKSALVKKE--MRVFQSLVGPDLDADGL 203
Query: 448 LDAA 451
L+ A
Sbjct: 204 LEPA 207
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} Length = 180 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Score = 37.1 bits (85), Expect = 0.002
Identities = 25/123 (20%), Positives = 47/123 (38%), Gaps = 8/123 (6%)
Query: 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH 393
+PG ++VD AAPGG + Y+ + + G+G + A D+ ++ + + R
Sbjct: 21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-----MDPIVGVDFLQGDFRDEL 75
Query: 394 ADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASL 453
K V++ + R +E L++ +D L S
Sbjct: 76 VMKALLERVGDSKVQ-VVMSDMAPNMSGTPAVDIPRAMYLVELA--LEMCRDVLAPGGSF 132
Query: 454 LVK 456
+VK
Sbjct: 133 VVK 135
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.7 bits (87), Expect = 0.003
Identities = 19/136 (13%), Positives = 40/136 (29%), Gaps = 13/136 (9%)
Query: 327 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN 386
V + G + +D + G + A G L + +I + L
Sbjct: 208 VYQQCQLKKGDTFMDLGSGVGNCVVQAAL-ECGCALSFGCEIMDDASDL----TILQYEE 262
Query: 387 SVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDE 446
R +R ++K V + + + D+ E+L ++
Sbjct: 263 LKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELIP----QCDVILVNNFLFDEDLNKKVEK 318
Query: 447 LLDAASLLVKPGGVLV 462
+L K G ++
Sbjct: 319 IL----QTAKVGCKII 330
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 528 | |||
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 100.0 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 100.0 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1ey1a_ | 139 | Antitermination factor NusB {Escherichia coli [Tax | 99.95 | |
| d1tzva_ | 141 | Antitermination factor NusB {Thermotoga maritima [ | 99.94 | |
| d1eyva_ | 131 | Antitermination factor NusB {Mycobacterium tubercu | 99.93 | |
| d1sqga1 | 140 | Ribosomal RNA small subunit methyltransferase B, R | 99.92 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.84 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.84 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 99.8 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.69 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 99.69 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.68 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.67 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.65 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.61 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.58 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.58 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.56 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 99.56 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.56 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.55 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.55 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.53 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.53 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.52 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.5 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.47 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.45 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.42 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.41 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 99.41 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 99.41 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.4 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 99.39 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.38 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.38 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.38 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.37 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.36 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 99.36 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.35 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.34 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.34 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.33 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 99.32 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.31 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.31 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 99.3 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.3 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.28 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.27 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 99.26 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 99.26 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.25 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.25 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.24 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 99.24 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 99.24 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 99.21 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.2 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 99.2 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 99.2 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 99.19 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 99.18 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.14 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.12 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 99.09 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.08 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.06 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.05 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.04 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.03 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.03 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.03 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.02 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 99.01 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 99.01 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 98.99 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 98.95 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.94 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 98.94 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 98.9 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 98.73 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.65 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 98.62 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.58 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.52 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.49 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 98.44 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.42 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 98.4 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.4 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.38 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.25 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 98.25 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.15 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 98.12 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 98.09 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 98.01 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 97.9 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 97.74 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 97.74 | |
| d1o9ga_ | 249 | rRNA methyltransferase AviRa {Streptomyces viridoc | 97.63 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 97.5 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 97.48 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 97.46 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 97.44 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 97.42 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 97.28 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 97.25 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 97.24 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 97.21 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 97.17 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 97.15 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 96.94 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 96.8 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 96.8 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.75 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 96.74 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 96.62 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 96.6 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 96.52 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 96.5 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 96.4 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 96.15 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 96.11 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 95.91 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 95.89 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 95.86 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 95.82 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 95.74 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 95.61 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 95.51 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 95.47 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 95.25 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 94.75 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 94.69 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 94.64 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 94.49 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 94.48 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 93.79 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 93.78 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 93.65 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 93.27 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 93.16 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 93.06 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 92.97 | |
| d2py6a1 | 395 | Methyltransferase FkbM {Methylobacillus flagellatu | 92.91 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 92.66 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 92.31 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 92.18 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 92.0 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 91.78 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 91.47 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 91.36 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 91.33 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 91.11 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 90.99 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 90.93 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 90.69 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 90.47 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 90.25 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 90.16 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 89.39 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 89.16 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 89.15 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 89.12 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 88.97 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 88.94 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 88.58 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 88.27 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 88.21 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 87.95 | |
| d2oo3a1 | 271 | Uncharacterized protein LPG1296 {Legionella pneumo | 87.79 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 87.6 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 87.46 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 87.27 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 86.99 | |
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 86.9 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 85.74 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 85.41 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 85.22 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 84.98 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 84.79 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 84.55 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 83.64 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 83.53 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 83.32 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 81.74 | |
| d2fr1a1 | 259 | Erythromycin synthase, eryAI, 1st ketoreductase mo | 80.87 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 80.82 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 80.27 |
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=2.5e-61 Score=488.88 Aligned_cols=300 Identities=28% Similarity=0.418 Sum_probs=259.5
Q ss_pred HHHHHhhhcChHHHHHHHHHHhCHHHHHHHHHhcCCCCCeEEEEcCCCCCCHHHHHHHHhhcCCCCCceecccCCceEEe
Q 009708 220 ARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRV 299 (528)
Q Consensus 220 ~~~ls~~~s~P~w~~~~~~~~~g~~~~~~~~~~~~~~~~~~~rvn~~k~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~ 299 (528)
++.+ ++|+||+||+++|.+.||+ +++++++++++++|+++|||++| .+++++++.|++.|+ ..+..+++++.+.+
T Consensus 6 ~~~~-~~~~~p~wl~~~~~~~~Ge-e~~~l~~a~~~~~p~~iRvN~~k-~~~e~~~~~L~~~g~--~~~~~~~~~~~~~~ 80 (313)
T d1ixka_ 6 LDKL-LRLGYSKLFADRYFQLWGE-RAIRIAEAMEKPLPRCFRVNTLK-ISVQDLVKRLNKKGF--QFKRVPWAKEGFCL 80 (313)
T ss_dssp HHHH-HHTTCCHHHHHHHHHHHTT-HHHHHHHHTTSCCCCEEEECTTT-SCHHHHHHHHHHTTC--EEEEETTEEEEEEE
T ss_pred hhHH-HHcCCCHHHHHHHHHHhhH-HHHHHHHHcCCCCCeEEEEcCCc-CCHHHHHHHHHhCCC--ceEECCCCcchhhh
Confidence 4455 7899999999999999995 68999999999999999999999 699999999999765 45677888888887
Q ss_pred eCCccchhcccccccceeEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHH
Q 009708 300 KTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNET 379 (528)
Q Consensus 300 ~~~~~~~~~~~~~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n 379 (528)
..+...+..++.|++|++++||.+|++++.++++++|++|||+||||||||+++++.+.+.+.|+|+|+++.+++.+++|
T Consensus 81 ~~~~~~l~~~~~~~~G~~~vQD~aS~l~~~~l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~ 160 (313)
T d1ixka_ 81 TREPFSITSTPEFLTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLN 160 (313)
T ss_dssp EECSSCGGGSHHHHTTSEEECCHHHHHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHH
T ss_pred ccCCCccccCHhhhhceEEEecccccchhhcccCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHH
Confidence 65444577888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCccEEEEcCccccccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCC
Q 009708 380 AKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459 (528)
Q Consensus 380 ~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG 459 (528)
++++|+.+ +.+++.|...+... ...||.||+||||||+|+++++|+++|.++.+++.+++.+|.+||.+|+++|||||
T Consensus 161 ~~r~~~~~-i~~~~~d~~~~~~~-~~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG 238 (313)
T d1ixka_ 161 LSRLGVLN-VILFHSSSLHIGEL-NVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGG 238 (313)
T ss_dssp HHHHTCCS-EEEESSCGGGGGGG-CCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEE
T ss_pred HHHHHhhc-cccccccccccccc-cccccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCc
Confidence 99999987 77888888876543 46899999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCCchhhHHHHHHHHhhCCCceEecCCCCCCC--c------cccCCceEEEcCCCCCCCceEEEEEEec
Q 009708 460 VLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPS--D------FVTKHGFFFSDPIKHSLDGAFAARLVRA 527 (528)
Q Consensus 460 ~LvysTcs~~~~Ene~~v~~~l~~~~~~~~~~~~~~~~~--~------~~~~~g~~~~~P~~~~~dGff~a~l~k~ 527 (528)
+|||||||++++|||+||.+||+++ +++++++....+. . .....+++|++||.+++||||+|+|+|.
T Consensus 239 ~lVYsTCSl~~eENE~VV~~~L~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGfFiA~l~Kv 313 (313)
T d1ixka_ 239 ILVYSTCSLEPEENEFVIQWALDNF-DVELLPLKYGEPALTNPFGIELSEEIKNARRLYPDVHETSGFFIAKIRKL 313 (313)
T ss_dssp EEEEEESCCCGGGTHHHHHHHHHHS-SEEEECCCSSEECCSSGGGCCCCGGGGGSEEECTTTSSSCSEEEEEEEEC
T ss_pred EEEEeeccCChHhHHHHHHHHHhcC-CCEEeecccCCccccCccccccccccCCcEEECCCCCCcccEEEEEEEEC
Confidence 9999999999999999999999877 5777766532211 0 0122457899999999999999999984
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.8e-61 Score=483.96 Aligned_cols=284 Identities=31% Similarity=0.447 Sum_probs=255.1
Q ss_pred ChHHHHHHHHHHhCHHHHHHHHHhcCCCCCeEEEEcCCCCCCHHHHHHHHhhcCCCCCceecccCCceEEeeCCccchhc
Q 009708 229 HPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQ 308 (528)
Q Consensus 229 ~P~w~~~~~~~~~g~~~~~~~~~~~~~~~~~~~rvn~~k~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (528)
||+||+++|.+.||+ ++++++++++++||+++|||++| .+++++.+.|++.|+ .....+++++.+++..+. .+..
T Consensus 1 HP~WLv~~~~~~~ge-e~~~l~~a~~~~~p~~lRvN~~k-~s~~~~~~~L~~~gi--~~~~~~~~p~~l~l~~~~-~l~~ 75 (284)
T d1sqga2 1 HPSWLLKRLQKAYPE-QWQSIVEANNQRPPMWLRINRTH-HSRDSWLALLDEAGM--KGFPHADYPDAVRLETPA-PVHA 75 (284)
T ss_dssp SCHHHHHHHHHHCTT-THHHHHHHHTSCCCEEEEECTTT-CCHHHHHHHHHHTTC--CEECCTTCTTEEEESSCC-CGGG
T ss_pred CcHHHHHHHHHHCHH-HHHHHHHHCCCCCCeEEEECCCC-CCHHHHHHHHHhcCC--ceeecCCCCccceecccc-chhh
Confidence 799999999999995 59999999999999999999999 799999999999665 445667788888887643 5677
Q ss_pred ccccccceeEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCcc
Q 009708 309 AGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSV 388 (528)
Q Consensus 309 ~~~~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~ 388 (528)
++.|.+|++++||.+|++++.++++++|++|||+||||||||+++++.+. .+.|+|+|+++.+++.++++++++|+++
T Consensus 76 ~~~~~~G~~~vQD~sS~l~~~~L~~~~g~~vLD~CAaPGgKt~~la~l~~-~~~i~a~d~~~~R~~~l~~~~~r~g~~~- 153 (284)
T d1sqga2 76 LPGFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAP-EAQVVAVDIDEQRLSRVYDNLKRLGMKA- 153 (284)
T ss_dssp STTGGGTSEEECCHHHHTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHCT-TCEEEEEESSTTTHHHHHHHHHHTTCCC-
T ss_pred ChhhhccEEEeccccccccccccCccccceeEeccCccccchhhhhhhhh-hhhhhhhhcchhhhhhHhhhhhcccccc-
Confidence 88999999999999999999999999999999999999999999999865 4899999999999999999999999986
Q ss_pred EEEEcCccccccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCC
Q 009708 389 IRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 468 (528)
Q Consensus 389 i~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~ 468 (528)
+.+...|...........||.||+||||||+|+++++||++|.+++.++.++.++|.+||++|+++|||||+|||||||+
T Consensus 154 ~~~~~~~~~~~~~~~~~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~ 233 (284)
T d1sqga2 154 TVKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV 233 (284)
T ss_dssp EEEECCTTCTHHHHTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred eeeeccccccchhcccccccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecC
Confidence 55666665443333356899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhHHHHHHHHhhCCCceEecCCCCCCCccccCCceEEEcCCCCCCCceEEEEEEe
Q 009708 469 DPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLVR 526 (528)
Q Consensus 469 ~~~Ene~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~~~dGff~a~l~k 526 (528)
+++|||+||++||++|++|++.+... ....+++++||.+++||||+|+|+|
T Consensus 234 ~~~ENE~vv~~~l~~~~~~~~~~~~~-------~~~~~~~~~P~~~~~dGFF~A~l~K 284 (284)
T d1sqga2 234 LPEENSLQIKAFLQRTADAELCETGT-------PEQPGKQNLPGAEEGDGFFYAKLIK 284 (284)
T ss_dssp CGGGTHHHHHHHHHHCTTCEECSSBC-------SSSBSEEECCCTTSCCSEEEEEEEC
T ss_pred chhhCHHHHHHHHHhCCCcEEecCCC-------CCCCcEEECCCCCCcccEEEEEEEC
Confidence 99999999999999999999876531 1234579999999999999999987
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.1e-52 Score=421.93 Aligned_cols=267 Identities=26% Similarity=0.355 Sum_probs=217.9
Q ss_pred CCeEEEEcCCCCCCHHHHHHHHhhcCCCC----------------CceecccCCceEEeeCCccchhcccccccceeEee
Q 009708 257 PSFSLRANSRKGVTRADLVMQLNLLKLQV----------------PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQ 320 (528)
Q Consensus 257 ~~~~~rvn~~k~~~~~~~~~~L~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~Q 320 (528)
.|.++||||+| ++++++.+.|++.|+.. .+..++++++.++++... .+..++.|++|+|++|
T Consensus 2 lP~~~RVNtlk-~~~ee~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~-~l~~~~~~~~G~~~~Q 79 (293)
T d2b9ea1 2 LPRFVRVNTLK-TCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFLLDPLMPELLVFPAQT-DLHEHPLYRAGHLILQ 79 (293)
T ss_dssp CCEEEEECTTT-CCHHHHHHHHHHTTCEEEEECSSHHHHHTCCTTEEEECSSSTTEEEECTTC-CCTTSHHHHTTSEEEC
T ss_pred CCeEEEECCCc-CCHHHHHHHHHHcCCccccccccchhhhhcccccccccCCCCCeEEeCCCC-CcccChHHhCcEEEEc
Confidence 47899999999 79999999999987632 123456778888776543 5677889999999999
Q ss_pred cchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccc
Q 009708 321 DESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400 (528)
Q Consensus 321 d~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~ 400 (528)
|.+|++++.++++++|++|||+||||||||+++|+++++.++|+|+|+++.+++.+++|++++|+++ +.+.+.|+..+.
T Consensus 80 D~sS~l~~~~L~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~-~~~~~~d~~~~~ 158 (293)
T d2b9ea1 80 DRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSC-CELAEEDFLAVS 158 (293)
T ss_dssp CTGGGHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEECCGGGSC
T ss_pred CCcccccccccCCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccc-eeeeehhhhhhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999997 889999998765
Q ss_pred ccC--CCCCCEEEEcCCCCCCccccCCchhhccCCHH--HHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHH
Q 009708 401 DNS--TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLE--DMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEER 476 (528)
Q Consensus 401 ~~~--~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~--~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~ 476 (528)
... .++||.||+||||||+|+++++|+.+|.++.. ++..+..+|+++|.+|+. ++|||+|||||||++++|||++
T Consensus 159 ~~~~~~~~fD~VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~~-l~~gG~lvYsTCSl~~~ENe~v 237 (293)
T d2b9ea1 159 PSDPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALT-FPSLQRLVYSTCSLCQEENEDV 237 (293)
T ss_dssp TTCGGGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTT-CTTCCEEEEEESCCCGGGTHHH
T ss_pred ccccccceeeEEeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhhh-cccccEEEEeeccCChhHhHHH
Confidence 432 36799999999999999999999999976554 478999999999999995 7999999999999999999999
Q ss_pred HHHHHhhCCC-ceEecCCCCCCCc----cccCCceEEEcCCCCCCCceEEEEEEec
Q 009708 477 VEAFLLRHPE-FSIDPADGLVPSD----FVTKHGFFFSDPIKHSLDGAFAARLVRA 527 (528)
Q Consensus 477 v~~~l~~~~~-~~~~~~~~~~~~~----~~~~~g~~~~~P~~~~~dGff~a~l~k~ 527 (528)
|++||++||+ +++.+..+.++.. +....++++++||.+++||||+|+|+|.
T Consensus 238 V~~~L~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGfFiA~L~ki 293 (293)
T d2b9ea1 238 VRDALQQNPGAFRLAPALPAWPHRGLSTFPGAEHCLRASPETTLSSGFFVAVIERV 293 (293)
T ss_dssp HHHHHTTSTTTEEECCCCTTCCCBCCSSSTTGGGSEEECHHHHSSCSEEEEEEEEC
T ss_pred HHHHHHhCCCCEEeccCcccccccccccCCCCCCEEEECCCCCCccCEEEEEEEEC
Confidence 9999999997 6777665544432 2345678999999999999999999983
|
| >d1ey1a_ a.79.1.1 (A:) Antitermination factor NusB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: NusB-like superfamily: NusB-like family: Antitermination factor NusB domain: Antitermination factor NusB species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=1.7e-28 Score=218.58 Aligned_cols=129 Identities=21% Similarity=0.282 Sum_probs=115.3
Q ss_pred CCChHHHHHHHHHHHHHhCCCchHHHhhcCCCCCCCccchhhhhcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009708 56 EVSPHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICL 135 (528)
Q Consensus 56 ~~~~aR~~A~~~Ly~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lv~gv~~~~~~LD~~i~~ 135 (528)
+|+.||+.|+|+||+++.++...+.+...+ .....+++.|+.|+++|++|++++...||.+|.+
T Consensus 5 ~R~~aR~~a~q~Ly~~~~~~~~~~~~~~~~----------------~~~~~~~~~d~~~~~~l~~gv~~~~~~id~~I~~ 68 (139)
T d1ey1a_ 5 ARRRARECAVQALYSWQLSQNDIADVEYQF----------------LAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKP 68 (139)
T ss_dssp CCCSHHHHHHHHHHHHHHHCCCSHHHHHHH----------------HHTTTSSSCCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHH----------------HHhcccchhhHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 345789999999999998888777765542 2234678889999999999999999999999999
Q ss_pred hccCCCCCCcccHHHHHHHHHHHHHHHhcC-CCCchhHHHHHHHHHHhcCCCchhhHHHHHHHHHhhc
Q 009708 136 LCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLK 202 (528)
Q Consensus 136 ~l~~~~~~~~l~~~~~~iLrlg~~el~~~~-~p~~~~inEaV~lak~~~~~~~~~fVN~VL~~~~r~~ 202 (528)
+++ |+++++++++++|||+|+|||+|++ +|++++|||||+|||.|+++++++||||||++++++-
T Consensus 69 ~l~--~~~~r~~~~~~~ILr~a~~El~~~~~~p~~viInE~Velak~~~~~~~~~fVNgVL~~i~k~~ 134 (139)
T d1ey1a_ 69 YLS--RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVI 134 (139)
T ss_dssp CCC--SCTTTSCHHHHHHHHHHHHHHHSCSSCCSHHHHHHHHHHTTTTTCSSSSHHHHHHHHHHHHHH
T ss_pred HHH--hhHHhcChHHHHHHHHHHHHHHHccCCCceehHHHHHHHHHHhCCCCccchHHHHHHHHHHHh
Confidence 997 7799999999999999999999975 9999999999999999999999999999999999863
|
| >d1tzva_ a.79.1.1 (A:) Antitermination factor NusB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: NusB-like superfamily: NusB-like family: Antitermination factor NusB domain: Antitermination factor NusB species: Thermotoga maritima [TaxId: 2336]
Probab=99.94 E-value=1.6e-27 Score=212.72 Aligned_cols=128 Identities=19% Similarity=0.234 Sum_probs=113.1
Q ss_pred CChHHHHHHHHHHHHHhCCC-chHHHhhcCCCCCCCccchhhhhcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009708 57 VSPHRAVSAVRLMRIQFGGA-FADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICL 135 (528)
Q Consensus 57 ~~~aR~~A~~~Ly~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lv~gv~~~~~~LD~~i~~ 135 (528)
|+.+|+.|+|+||+++.++. ..+.+.+.. ....+++.|+.|+++|++|+++++..||++|.+
T Consensus 5 R~~aR~~a~q~Ly~~~~~~~~~~~~~~~~~-----------------~~~~~~~~d~~~~~~lv~g~~~~~~~id~~I~~ 67 (141)
T d1tzva_ 5 RRRMRLAVFKALFQHEFRRDEDLEQILEEI-----------------LDETYDKKAKEDARRYIRGIKENLSMIDDLISR 67 (141)
T ss_dssp HHHHHHHHHHHHHHHTTCTTSCHHHHHHHH-----------------CCTTSCHHHHHHHHHHHHHHHHTHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHhcCCccHHHHHHHH-----------------HHhccchhHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 44689999999999987654 444454432 234688999999999999999999999999999
Q ss_pred hccCCCCCCcccHHHHHHHHHHHHHHHhc-CCCCchhHHHHHHHHHHhcCCCchhhHHHHHHHHHhhc
Q 009708 136 LCHDEKTFSSMEPLLLQILRIGFYEIVKL-DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLK 202 (528)
Q Consensus 136 ~l~~~~~~~~l~~~~~~iLrlg~~el~~~-~~p~~~~inEaV~lak~~~~~~~~~fVN~VL~~~~r~~ 202 (528)
++++ |+++++++++++|||+|+||++|+ ++|++++|||||++||.|+++++++|||||||+++++.
T Consensus 68 ~~~~-~~~~rl~~~~~~iLr~a~~El~~~~~~p~~v~InEaVelak~~~~~~~~~fVNaVL~~i~r~~ 134 (141)
T d1tzva_ 68 YLEK-WSLNRLSVVDRNVLRLATYELLFEKDIPIEVTIDEAIEIAKRYGTENSGKFVNGILDRIAKEH 134 (141)
T ss_dssp TCSS-SCGGGSCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred hccc-CChHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCCCcccchHHHHHHHHHHHc
Confidence 9876 999999999999999999999996 59999999999999999999999999999999999974
|
| >d1eyva_ a.79.1.1 (A:) Antitermination factor NusB {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: NusB-like superfamily: NusB-like family: Antitermination factor NusB domain: Antitermination factor NusB species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.93 E-value=8.3e-27 Score=205.36 Aligned_cols=127 Identities=22% Similarity=0.245 Sum_probs=110.7
Q ss_pred ChHHHHHHHHHHHHHhCCCchHHHhhcCCCCCCCccchhhhhcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 009708 58 SPHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLC 137 (528)
Q Consensus 58 ~~aR~~A~~~Ly~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lv~gv~~~~~~LD~~i~~~l 137 (528)
+.||+.|+|+||+++.++...+++.+.. ... .+.....+.|++|+++|++|++++...||.+|.+++
T Consensus 3 ~~aR~~a~q~Ly~~~~~~~~~~~~~~~~----------~~~---~~~~~~~~~~~~~~~~l~~gv~~~~~~id~~I~~~l 69 (131)
T d1eyva_ 3 HQARKRAVALLFEAEVRGISAAEVVDTR----------AAL---AEAKPDIARLHPYTAAVARGVSEHAAHIDDLITAHL 69 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTSCHHHHHHHH----------HHH---HHHCTTSCCCCHHHHHHHHHHHHTHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHhhCcCHHHHHHHH----------HHH---HhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Confidence 4689999999999999888887776531 000 112334566788999999999999999999999999
Q ss_pred cCCCCCCcccHHHHHHHHHHHHHHHhcC-CCCchhHHHHHHHHHHhcCCCchhhHHHHHHHH
Q 009708 138 HDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKL 198 (528)
Q Consensus 138 ~~~~~~~~l~~~~~~iLrlg~~el~~~~-~p~~~~inEaV~lak~~~~~~~~~fVN~VL~~~ 198 (528)
++ |+++++++++++|||+|+||++|.+ +|.+++|||+|++||.|+++++++||||||+++
T Consensus 70 ~~-~~~~~l~~i~~~iLr~a~~El~~~~~~p~~viInE~V~lak~~~~~~~~kfiNaVL~ki 130 (131)
T d1eyva_ 70 RG-WTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAKELSTDDSPGFVNGVLGQV 130 (131)
T ss_dssp TT-CCGGGSCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHSCTTHHHHHHHHHHHH
T ss_pred hh-hHHHHhhHHHHHHHHHHHHHHHhcccCCchhHHHHHHHHHHHhCCCcccchhHHHHHhc
Confidence 75 9999999999999999999999965 999999999999999999999999999999997
|
| >d1sqga1 a.79.1.3 (A:5-144) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: NusB-like superfamily: NusB-like family: RmsB N-terminal domain-like domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=1.4e-25 Score=199.51 Aligned_cols=125 Identities=22% Similarity=0.345 Sum_probs=113.5
Q ss_pred hHHHHHHHHHHHHHhCCCchHHHhhcCCCCCCCccchhhhhcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 009708 59 PHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCH 138 (528)
Q Consensus 59 ~aR~~A~~~Ly~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lv~gv~~~~~~LD~~i~~~l~ 138 (528)
++|++|+|+||++...+.+.+.+++.. ...+++.|+.|+++||+||+|+...||++|+++++
T Consensus 2 ~~R~~A~q~L~~v~~~g~~l~~~l~~~------------------~~~l~~~dr~~~~~lv~gvlr~~~~ld~~i~~~l~ 63 (140)
T d1sqga1 2 NLRSMAAQAVEQVVEQGQSLSNILPPL------------------QQKVSDKDKALLQELCFGVLRTLSQLDWLINKLMA 63 (140)
T ss_dssp CHHHHHHHHHHHHHHHCCCHHHHHHHH------------------HTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHHHcCCCHHHHHHHH------------------HHhCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHhh
Confidence 479999999999988788777766542 23588999999999999999999999999999998
Q ss_pred CCCCCCcccHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCCchhhHHHHHHHHHhhcC
Q 009708 139 DEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKD 203 (528)
Q Consensus 139 ~~~~~~~l~~~~~~iLrlg~~el~~~~~p~~~~inEaV~lak~~~~~~~~~fVN~VL~~~~r~~~ 203 (528)
+++.++++++++|||+|+||++|+++|++++|||||++||.|+++++++|||||||++.|+++
T Consensus 64 --~~~~~~~~~~~~iLr~a~~el~~~~~p~~avvneaV~lak~~~~~~~~~fVNaVLr~~~r~~~ 126 (140)
T d1sqga1 64 --RPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAIAIKRPQLKGLINGVLRQFQRQQE 126 (140)
T ss_dssp --SCCCGGGHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHH
T ss_pred --cccchhhHHHHHHHHHHHHHHHcCCCCCccchHHHHHHHHHhCCCcccchhHHHHHHHHhCcH
Confidence 456899999999999999999999999999999999999999999999999999999999764
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.84 E-value=1.7e-21 Score=196.03 Aligned_cols=160 Identities=24% Similarity=0.256 Sum_probs=129.2
Q ss_pred cccccceeEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccE
Q 009708 310 GLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVI 389 (528)
Q Consensus 310 ~~~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i 389 (528)
..++.|.|..|.....+ .. ...|++|||+|||+|++++++|.. ..+|+++|+|+.+++.+++|++++|+++ +
T Consensus 124 ~~~~tG~flDqr~~r~~-~~---~~~g~rVLDl~~gtG~~s~~~a~g---~~~V~~vD~s~~al~~a~~n~~~ngl~~-~ 195 (318)
T d1wxxa2 124 AGQKTGAYLDQRENRLY-ME---RFRGERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGLGN-V 195 (318)
T ss_dssp TTSCCCCCGGGHHHHHH-GG---GCCEEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTCTT-E
T ss_pred hccccccchhhhhhHHH-HH---HhCCCeeeccCCCCcHHHHHHHhc---CCcEEeecchHHHHHHHHHHHHHcCCCC-c
Confidence 45788999998876543 22 235889999999999999998753 5689999999999999999999999986 8
Q ss_pred EEEcCcccccccc---CCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcC
Q 009708 390 RTIHADLRTFADN---STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466 (528)
Q Consensus 390 ~~~~~D~~~~~~~---~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTc 466 (528)
+++++|+.++... ..++||+|++||||++.+. .++......|.+++..+.++|||||+|+|+||
T Consensus 196 ~~i~~d~~~~~~~~~~~~~~fD~Vi~DpP~~~~~~-------------~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~sc 262 (318)
T d1wxxa2 196 RVLEANAFDLLRRLEKEGERFDLVVLDPPAFAKGK-------------KDVERAYRAYKEVNLRAIKLLKEGGILATASC 262 (318)
T ss_dssp EEEESCHHHHHHHHHHTTCCEEEEEECCCCSCCST-------------TSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred ceeeccHHHHhhhhHhhhcCCCEEEEcCCccccch-------------HHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 9999999876432 2578999999999987553 45667777899999999999999999999999
Q ss_pred C--CCchhhHHHHHHHHhh-CCCceEe
Q 009708 467 S--IDPEENEERVEAFLLR-HPEFSID 490 (528)
Q Consensus 467 s--~~~~Ene~~v~~~l~~-~~~~~~~ 490 (528)
| +..++.++++...... ...+++.
T Consensus 263 s~~~~~~~f~~~v~~a~~~a~~~~~~~ 289 (318)
T d1wxxa2 263 SHHMTEPLFYAMVAEAAQDAHRLLRVV 289 (318)
T ss_dssp CTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CcccCHHHHHHHHHHHHHHcCCCEEEE
Confidence 9 4556666777665544 3445544
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.84 E-value=1.6e-20 Score=189.45 Aligned_cols=156 Identities=26% Similarity=0.225 Sum_probs=128.6
Q ss_pred cccccceeEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccE
Q 009708 310 GLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVI 389 (528)
Q Consensus 310 ~~~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i 389 (528)
..++.|.|..|.....++..++ ++|++|||+|||+|+++++++.. +..+|+++|+|+.+++.+++|++.+|+.+++
T Consensus 122 ~~~~tG~flDqr~~r~~~~~~~--~~g~~VLDl~~g~G~~si~~a~~--ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~ 197 (324)
T d2as0a2 122 RGQKTGFFLDQRENRLALEKWV--QPGDRVLDVFTYTGGFAIHAAIA--GADEVIGIDKSPRAIETAKENAKLNGVEDRM 197 (324)
T ss_dssp SSSSSCCCSTTHHHHHHHGGGC--CTTCEEEETTCTTTHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHTTCGGGE
T ss_pred cccccCcccchhhHHHHHHhhc--CCCCeeecccCcccchhhhhhhc--CCcEEEeecCCHHHHHHHHHHHHHcCCCccc
Confidence 3467899999988888887664 57899999999999999999874 4569999999999999999999999998789
Q ss_pred EEEcCcccccccc---CCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcC
Q 009708 390 RTIHADLRTFADN---STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466 (528)
Q Consensus 390 ~~~~~D~~~~~~~---~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTc 466 (528)
+++++|+.+.... ...+||+|++||||++.+ ..+.......|.+++..|.++|+|||+|+|+||
T Consensus 198 ~~~~~d~~~~~~~~~~~~~~fD~Vi~DpP~~~~~-------------~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~ 264 (324)
T d2as0a2 198 KFIVGSAFEEMEKLQKKGEKFDIVVLDPPAFVQH-------------EKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSC 264 (324)
T ss_dssp EEEESCHHHHHHHHHHTTCCEEEEEECCCCSCSS-------------GGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEEC
T ss_pred eeeechhhhhhHHHHhccCCCCchhcCCccccCC-------------HHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 9999999875432 256899999999997633 255666777889999999999999999999999
Q ss_pred CCC--chhhHHHHHHHHh
Q 009708 467 SID--PEENEERVEAFLL 482 (528)
Q Consensus 467 s~~--~~Ene~~v~~~l~ 482 (528)
|.+ .++..++|.....
T Consensus 265 s~~~~~~~f~~~v~~a~~ 282 (324)
T d2as0a2 265 SQHVDLQMFKDMIIAAGA 282 (324)
T ss_dssp CTTSCHHHHHHHHHHHHH
T ss_pred CccCCHHHHHHHHHHHHH
Confidence 965 3444455554443
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=99.80 E-value=3.6e-20 Score=185.98 Aligned_cols=158 Identities=11% Similarity=0.172 Sum_probs=121.3
Q ss_pred ccccccceeEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCC-c
Q 009708 309 AGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN-S 387 (528)
Q Consensus 309 ~~~~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~-~ 387 (528)
...++.|.|..|......++.. ..+|.+|||+|||+|+++++++. .+...|++||+|+..++.+++|++.+|++ .
T Consensus 120 ~~g~ktGlflDqR~~r~~l~~~--~~~g~~VLdlf~~~G~~sl~aa~--~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~ 195 (317)
T d2b78a2 120 NDGLMTGIFLDQRQVRNELING--SAAGKTVLNLFSYTAAFSVAAAM--GGAMATTSVDLAKRSRALSLAHFEANHLDMA 195 (317)
T ss_dssp SSSSCCSSCGGGHHHHHHHHHT--TTBTCEEEEETCTTTHHHHHHHH--TTBSEEEEEESCTTHHHHHHHHHHHTTCCCT
T ss_pred ccccccCCcHHHHHHHHHHHHH--hhCCCceeecCCCCcHHHHHHHh--CCCceEEEecCCHHHHHHHHHHHHHhcccCc
Confidence 3457889999887765444333 34689999999999999998876 34568999999999999999999999985 4
Q ss_pred cEEEEcCcccccccc---CCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 388 VIRTIHADLRTFADN---STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 388 ~i~~~~~D~~~~~~~---~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
+++++++|+.++... ..++||+|++|||+.+ +++ +.+..+.+.|.+++..+.++|+|||+|+|+
T Consensus 196 ~~~~i~~d~~~~l~~~~~~~~~fD~Ii~DPP~f~-----~~~--------~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~ 262 (317)
T d2b78a2 196 NHQLVVMDVFDYFKYARRHHLTYDIIIIDPPSFA-----RNK--------KEVFSVSKDYHKLIRQGLEILSENGLIIAS 262 (317)
T ss_dssp TEEEEESCHHHHHHHHHHTTCCEEEEEECCCCC------------------CCCCHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred ceEEEEccHHHHHHHHHhhcCCCCEEEEcChhhc-----cch--------hHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 689999999876542 2568999999999854 222 233335556788999999999999999999
Q ss_pred cCCCC--chhhHHHHHHHHhh
Q 009708 465 TCSID--PEENEERVEAFLLR 483 (528)
Q Consensus 465 Tcs~~--~~Ene~~v~~~l~~ 483 (528)
|||.+ .++....+...+.+
T Consensus 263 scs~~~~~~~f~~~v~~a~~~ 283 (317)
T d2b78a2 263 TNAANMTVSQFKKQIEKGFGK 283 (317)
T ss_dssp ECCTTSCHHHHHHHHHHHHTT
T ss_pred eCCccCCHHHHHHHHHHHHHH
Confidence 99944 44445666665544
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.69 E-value=7e-17 Score=157.78 Aligned_cols=127 Identities=17% Similarity=0.275 Sum_probs=107.4
Q ss_pred ccccceeEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEE
Q 009708 311 LLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIR 390 (528)
Q Consensus 311 ~~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~ 390 (528)
.++.+--++....+.+++..++++||++|||+|||+|+.|.++|+.+++.|+|+++|+++.+++.+++|+++.|+.+++.
T Consensus 79 ~~~r~~qiiypkd~~~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~ 158 (266)
T d1o54a_ 79 NMKRRTQIVYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVT 158 (266)
T ss_dssp TCCC-CCCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEE
T ss_pred hccCCccccchHHHHHHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcE
Confidence 35556666667778889999999999999999999999999999998888999999999999999999999999987899
Q ss_pred EEcCccccccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEE-EEcC
Q 009708 391 TIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV-YSTC 466 (528)
Q Consensus 391 ~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lv-ysTc 466 (528)
+...|...... ...||.|++|.|. .| +.|+++.++|||||+|+ |+.|
T Consensus 159 ~~~~d~~~~~~--~~~~D~V~~d~p~------------p~---------------~~l~~~~~~LKpGG~lv~~~P~ 206 (266)
T d1o54a_ 159 IKVRDISEGFD--EKDVDALFLDVPD------------PW---------------NYIDKCWEALKGGGRFATVCPT 206 (266)
T ss_dssp EECCCGGGCCS--CCSEEEEEECCSC------------GG---------------GTHHHHHHHEEEEEEEEEEESS
T ss_pred EEecccccccc--ccceeeeEecCCC------------HH---------------HHHHHHHhhcCCCCEEEEEeCc
Confidence 99999755332 3679999999886 12 25899999999999987 4444
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.69 E-value=2.1e-17 Score=163.84 Aligned_cols=159 Identities=19% Similarity=0.181 Sum_probs=117.7
Q ss_pred ccccccceeEeecchHHHHHHhcC-CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCc
Q 009708 309 AGLLKEGLCAVQDESAGLVVAVVD-PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS 387 (528)
Q Consensus 309 ~~~~~~G~~~~Qd~~s~l~~~~l~-~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~ 387 (528)
...++.|.|..|...-..+...+. ...|.+|||+|||+|+++++++.. +.+|++||.|+.+++.+++|++.+|+.+
T Consensus 105 ~~~~~tG~f~dqr~nr~~~~~~~~~~~~~~rVLdlf~~tG~~sl~aa~~---GA~V~~VD~s~~al~~a~~N~~ln~~~~ 181 (309)
T d2igta1 105 TAFRHVGVFPEQIVHWEWLKNAVETADRPLKVLNLFGYTGVASLVAAAA---GAEVTHVDASKKAIGWAKENQVLAGLEQ 181 (309)
T ss_dssp CSSSCCSCCGGGHHHHHHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHT---TCEEEEECSCHHHHHHHHHHHHHHTCTT
T ss_pred cCCCccccccchhHHHHHHHHHHhhccCCCeEEEecCCCcHHHHHHHhC---CCeEEEEeChHHHHHHHHHhhhhhcccC
Confidence 355789999999998887776543 456789999999999999998864 4589999999999999999999999875
Q ss_pred -cEEEEcCccccccccC---CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEE
Q 009708 388 -VIRTIHADLRTFADNS---TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463 (528)
Q Consensus 388 -~i~~~~~D~~~~~~~~---~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvy 463 (528)
.++++++|+..+.... ..+||+|++|||+.+.|.-. ..|. +...+..++..+..+|+|||.+++
T Consensus 182 ~~~~~i~~D~~~~l~~~~~~~~~fD~IilDPP~f~~~~~~----~~~~--------~~~~~~~l~~~~~~ll~~~g~~ll 249 (309)
T d2igta1 182 APIRWICEDAMKFIQREERRGSTYDIILTDPPKFGRGTHG----EVWQ--------LFDHLPLMLDICREILSPKALGLV 249 (309)
T ss_dssp SCEEEECSCHHHHHHHHHHHTCCBSEEEECCCSEEECTTC----CEEE--------HHHHHHHHHHHHHHTBCTTCCEEE
T ss_pred CcEEEEeCCHHHhHHHHhhcCCCCCEEEECCCcccccccc----hhHH--------HHHHHHHHHHHHHHhcCCCCCEEE
Confidence 5899999999875432 57899999999996544311 1121 222344578889999999997665
Q ss_pred EcC-CC--CchhhHHHHHHHHh
Q 009708 464 STC-SI--DPEENEERVEAFLL 482 (528)
Q Consensus 464 sTc-s~--~~~Ene~~v~~~l~ 482 (528)
+|| +. .+..-++.+...+.
T Consensus 250 ~t~~s~~~s~~~~~~~~~~~~~ 271 (309)
T d2igta1 250 LTAYSIRASFYSMHELMRETMR 271 (309)
T ss_dssp EEECCTTSCHHHHHHHHHHHTT
T ss_pred EecCCCCCCHHHHHHHHHHHHH
Confidence 554 42 33333444444443
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.68 E-value=3.1e-17 Score=158.57 Aligned_cols=114 Identities=20% Similarity=0.406 Sum_probs=92.1
Q ss_pred cchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccc
Q 009708 321 DESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400 (528)
Q Consensus 321 d~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~ 400 (528)
...+.++...++++||++|||+|||+|..|..+|+.+++.|+|+++|+++.+++.|++|+++++..+++++.++|+.+..
T Consensus 71 pkD~~~Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~ 150 (250)
T d1yb2a1 71 EIDASYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFI 150 (250)
T ss_dssp ----------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCC
T ss_pred HHHHHHHHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeeccc
Confidence 34444566778999999999999999999999999988889999999999999999999999866556999999998764
Q ss_pred ccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEE
Q 009708 401 DNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463 (528)
Q Consensus 401 ~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvy 463 (528)
. ...||.|++|.|.. | +.|+++.+.|||||+|+.
T Consensus 151 ~--~~~fD~V~ld~p~p------------~---------------~~l~~~~~~LKpGG~lv~ 184 (250)
T d1yb2a1 151 S--DQMYDAVIADIPDP------------W---------------NHVQKIASMMKPGSVATF 184 (250)
T ss_dssp C--SCCEEEEEECCSCG------------G---------------GSHHHHHHTEEEEEEEEE
T ss_pred c--cceeeeeeecCCch------------H---------------HHHHHHHHhcCCCceEEE
Confidence 3 36799999998861 2 248899999999999983
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.67 E-value=1.8e-16 Score=154.26 Aligned_cols=127 Identities=24% Similarity=0.295 Sum_probs=106.5
Q ss_pred ccccceeEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHc--CCCcc
Q 009708 311 LLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLH--QVNSV 388 (528)
Q Consensus 311 ~~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~--g~~~~ 388 (528)
.++.+.-++....+.++...++++||++|||+|||+|..|.++|..+++.|+|+++|+++++++.+++|++.. +...+
T Consensus 72 ~~~r~tqiiypkD~s~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~n 151 (264)
T d1i9ga_ 72 SMPRGPQVIYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDN 151 (264)
T ss_dssp TSCSCSCCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTT
T ss_pred hccCCccccchHHHHHHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCce
Confidence 3556666677777888899999999999999999999999999999999999999999999999999999985 33345
Q ss_pred EEEEcCccccccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 389 IRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 389 i~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
+.++++|+.+... ....||.|++|.|. .| ..+.++.+.|||||+|+..+
T Consensus 152 v~~~~~d~~~~~~-~~~~fDaV~ldlp~------------P~---------------~~l~~~~~~LkpGG~lv~~~ 200 (264)
T d1i9ga_ 152 WRLVVSDLADSEL-PDGSVDRAVLDMLA------------PW---------------EVLDAVSRLLVAGGVLMVYV 200 (264)
T ss_dssp EEEECSCGGGCCC-CTTCEEEEEEESSC------------GG---------------GGHHHHHHHEEEEEEEEEEE
T ss_pred EEEEecccccccc-cCCCcceEEEecCC------------HH---------------HHHHHHHhccCCCCEEEEEe
Confidence 9999999987532 24789999999887 23 24888999999999987433
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.65 E-value=2.9e-16 Score=145.25 Aligned_cols=128 Identities=20% Similarity=0.251 Sum_probs=103.1
Q ss_pred HHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCC
Q 009708 325 GLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 404 (528)
Q Consensus 325 ~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~ 404 (528)
.++...+++++|++|||+|||+|..++.+|.. .++|+|+|+++.+++.+++|++++|+.++++++++|+.+.... .
T Consensus 23 ~~il~~l~~~~g~~VLDiGcGsG~~s~~lA~~---~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~-~ 98 (186)
T d1l3ia_ 23 CLIMCLAEPGKNDVAVDVGCGTGGVTLELAGR---VRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCK-I 98 (186)
T ss_dssp HHHHHHHCCCTTCEEEEESCTTSHHHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTT-S
T ss_pred HHHHHhcCCCCCCEEEEEECCeEccccccccc---ceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccc-c
Confidence 45555689999999999999999999999864 4699999999999999999999999977799999999876543 3
Q ss_pred CCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHHHhhC
Q 009708 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRH 484 (528)
Q Consensus 405 ~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~l~~~ 484 (528)
..||.|+++.+.. . ..++++.+.++|||||++++..+ ..|+...+.+++..+
T Consensus 99 ~~~D~v~~~~~~~------------------~-------~~~~~~~~~~~LkpgG~lvi~~~---~~e~~~~~~~~l~~~ 150 (186)
T d1l3ia_ 99 PDIDIAVVGGSGG------------------E-------LQEILRIIKDKLKPGGRIIVTAI---LLETKFEAMECLRDL 150 (186)
T ss_dssp CCEEEEEESCCTT------------------C-------HHHHHHHHHHTEEEEEEEEEEEC---BHHHHHHHHHHHHHT
T ss_pred CCcCEEEEeCccc------------------c-------chHHHHHHHHHhCcCCEEEEEee---ccccHHHHHHHHHHc
Confidence 6899999876531 1 13468899999999999997654 345555566666664
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.61 E-value=7.5e-16 Score=143.39 Aligned_cols=134 Identities=19% Similarity=0.290 Sum_probs=105.8
Q ss_pred cchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCc-cEEEEcCccccc
Q 009708 321 DESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS-VIRTIHADLRTF 399 (528)
Q Consensus 321 d~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~-~i~~~~~D~~~~ 399 (528)
|.++.++.+.+.+.++++|||+|||+|..++.++.. ..+|+++|+|+.+++.+++|++.+++.+ .++++.+|..+.
T Consensus 38 d~~t~lLi~~l~~~~~~~VLDiGcG~G~~~~~la~~---~~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~ 114 (194)
T d1dusa_ 38 DKGTKILVENVVVDKDDDILDLGCGYGVIGIALADE---VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYEN 114 (194)
T ss_dssp CHHHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTT
T ss_pred CHHHHHHHHhCCcCCCCeEEEEeecCChhHHHHHhh---ccccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhh
Confidence 667888999999999999999999999999998875 4589999999999999999999999875 589999998764
Q ss_pred cccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHH
Q 009708 400 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEA 479 (528)
Q Consensus 400 ~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~ 479 (528)
.. .++||+|++|||+.. ..+ ....+++.+.++|||||+|+....... +.+.+..
T Consensus 115 ~~--~~~fD~Ii~~~p~~~--------------~~~-------~~~~~l~~~~~~LkpgG~l~i~~~~~~---~~~~~~~ 168 (194)
T d1dusa_ 115 VK--DRKYNKIITNPPIRA--------------GKE-------VLHRIIEEGKELLKDNGEIWVVIQTKQ---GAKSLAK 168 (194)
T ss_dssp CT--TSCEEEEEECCCSTT--------------CHH-------HHHHHHHHHHHHEEEEEEEEEEEESTH---HHHHHHH
T ss_pred hc--cCCceEEEEcccEEe--------------cch-------hhhhHHHHHHHhcCcCcEEEEEEeCcC---CHHHHHH
Confidence 32 468999999999731 111 224569999999999999876543332 2344555
Q ss_pred HHhh
Q 009708 480 FLLR 483 (528)
Q Consensus 480 ~l~~ 483 (528)
++.+
T Consensus 169 ~l~~ 172 (194)
T d1dusa_ 169 YMKD 172 (194)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.58 E-value=2.9e-15 Score=145.67 Aligned_cols=126 Identities=22% Similarity=0.347 Sum_probs=99.4
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEE
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 412 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~ 412 (528)
..+|++|||+|||+|.+++.+|.. +.++|+|+|+|+.+++.+++|++.+|+.++++++++|+..+... ..||.|++
T Consensus 105 ~~~g~~VlD~~aG~G~~~l~~a~~--~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~~--~~~D~Ii~ 180 (260)
T d2frna1 105 AKPDELVVDMFAGIGHLSLPIAVY--GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGE--NIADRILM 180 (260)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHH--TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCC--SCEEEEEE
T ss_pred cCCccEEEECcceEcHHHHHHHHh--CCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhccC--CCCCEEEE
Confidence 457999999999999999999986 35699999999999999999999999999999999999987653 67999999
Q ss_pred cCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc-C--CCCchhhHHHHHHHHhhCCCceE
Q 009708 413 DAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST-C--SIDPEENEERVEAFLLRHPEFSI 489 (528)
Q Consensus 413 D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT-c--s~~~~Ene~~v~~~l~~~~~~~~ 489 (528)
|+|+++. ++|..|.++|++||+|.|.. | ....++..+.+....... ++++
T Consensus 181 ~~p~~~~--------------------------~~l~~a~~~l~~gG~lh~~~~~~~~~~~~~~~e~~~~~~~~~-g~~v 233 (260)
T d2frna1 181 GYVVRTH--------------------------EFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEY-GYDV 233 (260)
T ss_dssp CCCSSGG--------------------------GGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHT-TCEE
T ss_pred CCCCchH--------------------------HHHHHHHhhcCCCCEEEEEeccccccchhhHHHHHHHHHHHc-CCce
Confidence 9998542 24788999999999986543 2 122233344555555543 4444
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.58 E-value=9.5e-15 Score=139.10 Aligned_cols=108 Identities=20% Similarity=0.263 Sum_probs=88.7
Q ss_pred cCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc--CCCCCC
Q 009708 331 VDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN--STVKCD 408 (528)
Q Consensus 331 l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~--~~~~fD 408 (528)
+.++||++|||+|||+|.++.++|+.+++.|+|+|+|+++.+++.++++++..+ + +..+..|....... ....+|
T Consensus 69 l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~--~-~~~i~~d~~~~~~~~~~~~~vD 145 (227)
T d1g8aa_ 69 FPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERR--N-IVPILGDATKPEEYRALVPKVD 145 (227)
T ss_dssp CCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCT--T-EEEEECCTTCGGGGTTTCCCEE
T ss_pred cccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcC--C-ceEEEEECCCcccccccccceE
Confidence 457899999999999999999999999889999999999999999999987654 3 56777777654332 246789
Q ss_pred EEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 409 KVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 409 ~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
.|++|.++.. .+..++.++.++|||||++++++
T Consensus 146 ~i~~d~~~~~------------------------~~~~~l~~~~~~LkpgG~lvi~~ 178 (227)
T d1g8aa_ 146 VIFEDVAQPT------------------------QAKILIDNAEVYLKRGGYGMIAV 178 (227)
T ss_dssp EEEECCCSTT------------------------HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEEccccc------------------------hHHHHHHHHHHhcccCCeEEEEE
Confidence 9999998832 22346999999999999988653
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=7.5e-15 Score=146.88 Aligned_cols=128 Identities=20% Similarity=0.370 Sum_probs=101.8
Q ss_pred cccceeEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcC-------
Q 009708 312 LKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQ------- 384 (528)
Q Consensus 312 ~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g------- 384 (528)
++.+--++....+.+++..++++||++|||+|||+|..|++||..+++.|+|+++|+++++++.|++|+++.+
T Consensus 75 ~~r~tqiiypkD~~~Il~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~ 154 (324)
T d2b25a1 75 MKRGTAITFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSH 154 (324)
T ss_dssp SCCSSCCCCHHHHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTC
T ss_pred cCCCCcccccccHHHHHHHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhh
Confidence 4455555556667788888999999999999999999999999999989999999999999999999999753
Q ss_pred ---CCccEEEEcCccccccccC-CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCE
Q 009708 385 ---VNSVIRTIHADLRTFADNS-TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGV 460 (528)
Q Consensus 385 ---~~~~i~~~~~D~~~~~~~~-~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~ 460 (528)
..+++++.+.|+....... ...||.|++|.|. .|. .|.++.++|||||+
T Consensus 155 ~~~~~~nv~~~~~di~~~~~~~~~~~fD~V~LD~p~------------P~~---------------~l~~~~~~LKpGG~ 207 (324)
T d2b25a1 155 VEEWPDNVDFIHKDISGATEDIKSLTFDAVALDMLN------------PHV---------------TLPVFYPHLKHGGV 207 (324)
T ss_dssp SSCCCCCEEEEESCTTCCC-------EEEEEECSSS------------TTT---------------THHHHGGGEEEEEE
T ss_pred hhccccceeEEecchhhcccccCCCCcceEeecCcC------------HHH---------------HHHHHHHhccCCCE
Confidence 3345899999987654322 4579999999875 121 38899999999999
Q ss_pred EE-EEcC
Q 009708 461 LV-YSTC 466 (528)
Q Consensus 461 Lv-ysTc 466 (528)
|+ |+.|
T Consensus 208 lv~~~P~ 214 (324)
T d2b25a1 208 CAVYVVN 214 (324)
T ss_dssp EEEEESS
T ss_pred EEEEeCC
Confidence 87 5544
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.56 E-value=6.4e-15 Score=136.67 Aligned_cols=147 Identities=21% Similarity=0.280 Sum_probs=116.5
Q ss_pred HHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc----
Q 009708 327 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---- 402 (528)
Q Consensus 327 ~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---- 402 (528)
+++++.+++|+.|||+|||+||.|..+++.++ .++|+|+|.++.+++.++++++.++ +++.++++++.++...
T Consensus 15 vi~~l~~~~~~~~lD~t~G~Gghs~~il~~~~-~~~vi~~D~d~~~l~~a~~~l~~~~--~r~~~~~~~f~~~~~~~~~~ 91 (192)
T d1m6ya2 15 VIEFLKPEDEKIILDCTVGEGGHSRAILEHCP-GCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYREADFLLKTL 91 (192)
T ss_dssp HHHHHCCCTTCEEEETTCTTSHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGGGHHHHHHHT
T ss_pred HHHhhCCCCCCEEEEecCCCcHHHHHHHhcCC-CCeEEEeechHHHHHHHHHhhcccc--ccccchhHHHhhHHHHHHHc
Confidence 56778899999999999999999999999875 6899999999999999999998876 3489999988775321
Q ss_pred CCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHHHh
Q 009708 403 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLL 482 (528)
Q Consensus 403 ~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~l~ 482 (528)
..++||.|+.|..||+.=+ ++..+....+.+.|..++.+|+|||++++.| ++..|+ ..|..|+.
T Consensus 92 ~~~~vdgIl~DlGvSs~Ql-------------d~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~--f~s~Ed-r~vk~~f~ 155 (192)
T d1m6ya2 92 GIEKVDGILMDLGVSTYQL-------------KGENRELENLKEFLKKAEDLLNPGGRIVVIS--FHSLED-RIVKETFR 155 (192)
T ss_dssp TCSCEEEEEEECSCCHHHH-------------HTSHTHHHHHHHHHHHGGGGEEEEEEEEEEE--SSHHHH-HHHHHHHH
T ss_pred CCCCcceeeeccchhHhhh-------------hhhhccchhHHHHHHHHHHhcCCCCeeeeec--cccHHH-HHHHHHHh
Confidence 1468999999999874211 1222334456778999999999999999754 566665 57889999
Q ss_pred hCCCceEecC
Q 009708 483 RHPEFSIDPA 492 (528)
Q Consensus 483 ~~~~~~~~~~ 492 (528)
.++.+.+..-
T Consensus 156 ~~~~~~~i~~ 165 (192)
T d1m6ya2 156 NSKKLRILTE 165 (192)
T ss_dssp HCSSEEESCS
T ss_pred hccccccCCC
Confidence 9988776543
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.56 E-value=9.9e-15 Score=142.57 Aligned_cols=139 Identities=12% Similarity=0.084 Sum_probs=105.2
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEc
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLD 413 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D 413 (528)
..+.+|||+|||+|..++.++...+ ..+|+|+|+|+.+++.|++|++++|+++ ++++++|...... ..+||+|++|
T Consensus 107 ~~~~~vlDlGtGSG~I~i~la~~~p-~~~v~avDis~~Al~~A~~Na~~~~~~~-v~~~~~d~~~~~~--~~~fDlIvsN 182 (274)
T d2b3ta1 107 EQPCRILDLGTGTGAIALALASERP-DCEIIAVDRMPDAVSLAQRNAQHLAIKN-IHILQSDWFSALA--GQQFAMIVSN 182 (274)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCT-TSEEEEECSSHHHHHHHHHHHHHHTCCS-EEEECCSTTGGGT--TCCEEEEEEC
T ss_pred ccccceeeeehhhhHHHHHHHhhCC-cceeeeccchhHHHhHHHHHHHHhCccc-ceeeecccccccC--CCceeEEEec
Confidence 3456899999999999999998854 6799999999999999999999999975 9999999877543 3689999999
Q ss_pred CCCCCCccc-------cCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHHHhhC
Q 009708 414 APCSGLGVL-------SKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRH 484 (528)
Q Consensus 414 ~Pcsg~G~~-------~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~l~~~ 484 (528)
||+-....+ ...|...+. .-.......++++..+.++|+|||.+++- +... ..+.+..++.++
T Consensus 183 PPYi~~~~~~~~~~v~~~eP~~AL~----~g~dGl~~~~~i~~~a~~~L~~~G~l~lE---ig~~-q~~~v~~~l~~~ 252 (274)
T d2b3ta1 183 PPYIDEQDPHLQQGDVRFEPLTALV----AADSGMADIVHIIEQSRNALVSGGFLLLE---HGWQ-QGEAVRQAFILA 252 (274)
T ss_dssp CCCBCTTCHHHHSSGGGSSCSTTTB----CHHHHTHHHHHHHHHHGGGEEEEEEEEEE---CCSS-CHHHHHHHHHHT
T ss_pred chhhhhhhhcccccccccchhhhcc----cccccchHHHHHHHHHHHhcCCCCEEEEE---ECch-HHHHHHHHHHHC
Confidence 999654322 222222211 12344566788999999999999999964 2222 234566777665
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.55 E-value=6.9e-15 Score=131.51 Aligned_cols=80 Identities=20% Similarity=0.309 Sum_probs=73.0
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDA 414 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~ 414 (528)
.|.+|||+|||+|+.++.++.+ +..+|+++|.++.+++.+++|++.+++.++++++++|+..+......+||+|++||
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~r--ga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DP 91 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSR--GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDP 91 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHT--TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECC
T ss_pred CCCeEEEcCCccCHHHHHHHHh--CcceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEech
Confidence 5889999999999999988875 45699999999999999999999999998999999999987665568899999999
Q ss_pred CC
Q 009708 415 PC 416 (528)
Q Consensus 415 Pc 416 (528)
|+
T Consensus 92 Py 93 (152)
T d2esra1 92 PY 93 (152)
T ss_dssp SS
T ss_pred hh
Confidence 98
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.55 E-value=1.3e-14 Score=138.44 Aligned_cols=117 Identities=14% Similarity=0.178 Sum_probs=95.6
Q ss_pred hHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc
Q 009708 323 SAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 402 (528)
Q Consensus 323 ~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~ 402 (528)
+..+++..++++||++|||+|||+|..+..+++. .++|+|+|+|+.+++.|++++...|+++ +.++++|+.+++.
T Consensus 4 ~~~~l~~~~~~~~~~rILDiGcGtG~~~~~la~~---~~~v~gvD~S~~~l~~A~~~~~~~~~~~-~~~~~~d~~~~~~- 78 (234)
T d1xxla_ 4 SLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPY---VQECIGVDATKEMVEVASSFAQEKGVEN-VRFQQGTAESLPF- 78 (234)
T ss_dssp HHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHHHHHHHHTCCS-EEEEECBTTBCCS-
T ss_pred HHHHHHHHhCCCCCCEEEEeCCcCcHHHHHHHHh---CCeEEEEeCChhhhhhhhhhhccccccc-ccccccccccccc-
Confidence 3467888899999999999999999999999986 3689999999999999999999999986 9999999988653
Q ss_pred CCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcC
Q 009708 403 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466 (528)
Q Consensus 403 ~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTc 466 (528)
..++||+|++- +++...++ ...+|+++.++|||||++++++-
T Consensus 79 ~~~~fD~v~~~------~~l~~~~d----------------~~~~l~~~~r~LkpgG~~~~~~~ 120 (234)
T d1xxla_ 79 PDDSFDIITCR------YAAHHFSD----------------VRKAVREVARVLKQDGRFLLVDH 120 (234)
T ss_dssp CTTCEEEEEEE------SCGGGCSC----------------HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccccceeeee------ceeecccC----------------HHHHHHHHHHeeCCCcEEEEEEc
Confidence 34789999972 22222221 13469999999999999987643
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.53 E-value=1.6e-14 Score=136.05 Aligned_cols=133 Identities=20% Similarity=0.199 Sum_probs=98.6
Q ss_pred cCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC--CCCCC
Q 009708 331 VDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS--TVKCD 408 (528)
Q Consensus 331 l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~--~~~fD 408 (528)
+.++||++|||+|||+|+.+.++++.++ .++|+|+|+|+.+++.++++++..+ ++.++.+|+....... ...+|
T Consensus 52 l~lkpg~~VLDlGcG~G~~~~~la~~v~-~g~V~gvDis~~~i~~a~~~a~~~~---ni~~i~~d~~~~~~~~~~~~~vd 127 (209)
T d1nt2a_ 52 LKLRGDERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLELVRERN---NIIPLLFDASKPWKYSGIVEKVD 127 (209)
T ss_dssp CCCCSSCEEEEETCTTSHHHHHHHHHTT-TSEEEEECCCHHHHHHHHHHHHHCS---SEEEECSCTTCGGGTTTTCCCEE
T ss_pred CCCCCCCEEEEeCCcCCHHHHHHHHhcc-CCeEEEEeCCHHHHHHHHHHhhccC---CceEEEeeccCccccccccceEE
Confidence 5689999999999999999999999874 5799999999999999999998864 3889999988754322 34577
Q ss_pred EEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc---CCCCchhhHHHHHHHHhh-C
Q 009708 409 KVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST---CSIDPEENEERVEAFLLR-H 484 (528)
Q Consensus 409 ~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT---cs~~~~Ene~~v~~~l~~-~ 484 (528)
.|+.|.++. ..+..++.++.++|||||++++++ |.-...+.+.+....... .
T Consensus 128 ~v~~~~~~~------------------------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~d~~~~~~~~~~~~~~~l~ 183 (209)
T d1nt2a_ 128 LIYQDIAQK------------------------NQIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEVFKSVLKEME 183 (209)
T ss_dssp EEEECCCST------------------------THHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCHHHHHHHHHHHHH
T ss_pred EEEecccCh------------------------hhHHHHHHHHHHHhccCCeEEEEEEccccCCCCCHHHHHHHHHHHHH
Confidence 777776652 112346999999999999998764 334444444555444332 2
Q ss_pred CCceEec
Q 009708 485 PEFSIDP 491 (528)
Q Consensus 485 ~~~~~~~ 491 (528)
.+|++..
T Consensus 184 ~gf~i~E 190 (209)
T d1nt2a_ 184 GDFKIVK 190 (209)
T ss_dssp TTSEEEE
T ss_pred cCCEEEE
Confidence 4676644
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.53 E-value=1.3e-14 Score=139.44 Aligned_cols=120 Identities=18% Similarity=0.167 Sum_probs=97.7
Q ss_pred ecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccc
Q 009708 320 QDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 399 (528)
Q Consensus 320 Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~ 399 (528)
++.....+...+.+.||++|||+|||+|..+..+++.. +.+|+|+|+|+.+++.+++++...|+.++++++++|+..+
T Consensus 18 ~~~~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~--~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~ 95 (245)
T d1nkva_ 18 TEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDH--GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY 95 (245)
T ss_dssp CHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHT--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTC
T ss_pred CHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhc--CCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhc
Confidence 34556678889999999999999999999999998863 3699999999999999999999999998899999999887
Q ss_pred cccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 400 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 400 ~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
.. .++||.|++-- ++..-++ ...+++++.++|||||++++..
T Consensus 96 ~~--~~~fD~v~~~~------~~~~~~d----------------~~~~l~~~~r~LkPGG~l~i~~ 137 (245)
T d1nkva_ 96 VA--NEKCDVAACVG------ATWIAGG----------------FAGAEELLAQSLKPGGIMLIGE 137 (245)
T ss_dssp CC--SSCEEEEEEES------CGGGTSS----------------SHHHHHHHTTSEEEEEEEEEEE
T ss_pred cc--cCceeEEEEEe------hhhccCC----------------HHHHHHHHHHHcCcCcEEEEEe
Confidence 43 47899998621 1111111 1236899999999999999764
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.52 E-value=1.1e-14 Score=137.58 Aligned_cols=110 Identities=13% Similarity=0.181 Sum_probs=90.6
Q ss_pred HHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC
Q 009708 324 AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS 403 (528)
Q Consensus 324 s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~ 403 (528)
...+.+.+++++|++|||+|||+|..|..+|+.+++.++|+++|+++.+++.++++++..++.+ +.++++|+......
T Consensus 64 ~a~~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n-~~~~~~d~~~~~~~- 141 (213)
T d1dl5a1 64 MALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIEN-VIFVCGDGYYGVPE- 141 (213)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEESCGGGCCGG-
T ss_pred hHHHHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccc-cccccCchHHcccc-
Confidence 3456678899999999999999999999999998888999999999999999999999999987 78889998775443
Q ss_pred CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEE
Q 009708 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463 (528)
Q Consensus 404 ~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvy 463 (528)
..+||+|+++..+. .-| +..++.|||||+||.
T Consensus 142 ~~~fD~I~~~~~~~------~~p----------------------~~l~~~LkpGG~lv~ 173 (213)
T d1dl5a1 142 FSPYDVIFVTVGVD------EVP----------------------ETWFTQLKEGGRVIV 173 (213)
T ss_dssp GCCEEEEEECSBBS------CCC----------------------HHHHHHEEEEEEEEE
T ss_pred ccchhhhhhhccHH------HhH----------------------HHHHHhcCCCcEEEE
Confidence 36799999865441 112 223456999999985
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.50 E-value=1.1e-14 Score=138.07 Aligned_cols=114 Identities=13% Similarity=0.174 Sum_probs=91.1
Q ss_pred HHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCC
Q 009708 327 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVK 406 (528)
Q Consensus 327 ~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~ 406 (528)
+.+.+.++++++|||+|||+|..+..+++. ..+|+|+|+|+.+++.++++++..+.++ ++++++|+.+++. ..++
T Consensus 7 ll~~~~l~~~~rVLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~i~~A~~~~~~~~~~~-i~~~~~d~~~l~~-~~~~ 81 (231)
T d1vl5a_ 7 LMQIAALKGNEEVLDVATGGGHVANAFAPF---VKKVVAFDLTEDILKVARAFIEGNGHQQ-VEYVQGDAEQMPF-TDER 81 (231)
T ss_dssp HHHHHTCCSCCEEEEETCTTCHHHHHHGGG---SSEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEECCC-CCCS-CTTC
T ss_pred HHHhcCCCCcCEEEEecccCcHHHHHHHHh---CCEEEEEECCHHHHhhhhhccccccccc-ccccccccccccc-cccc
Confidence 455678899999999999999999999875 4689999999999999999999999886 8999999998753 3478
Q ss_pred CCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 407 CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 407 fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
||+|++.- ++.+-+| ...+|+++.++|||||+|++.+-+
T Consensus 82 fD~v~~~~------~l~~~~d----------------~~~~l~~~~r~LkpgG~l~i~~~~ 120 (231)
T d1vl5a_ 82 FHIVTCRI------AAHHFPN----------------PASFVSEAYRVLKKGGQLLLVDNS 120 (231)
T ss_dssp EEEEEEES------CGGGCSC----------------HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred cccccccc------cccccCC----------------HHHHHHHHHHhcCCCcEEEEEeCC
Confidence 99999631 2222111 234699999999999999986543
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.47 E-value=7.4e-14 Score=135.04 Aligned_cols=134 Identities=17% Similarity=0.186 Sum_probs=98.8
Q ss_pred cchHHHHHHhcC--CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccc
Q 009708 321 DESAGLVVAVVD--PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 398 (528)
Q Consensus 321 d~~s~l~~~~l~--~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~ 398 (528)
.++.+++...+. .++|++|||+|||+|..++.+++. +.+|+|+|+|+.+++.+++|++++|++. +++++|...
T Consensus 104 H~TT~l~l~~l~~~~~~g~~VLDiGcGsG~l~i~aa~~---g~~V~gvDis~~av~~A~~na~~n~~~~--~~~~~d~~~ 178 (254)
T d2nxca1 104 HETTRLALKALARHLRPGDKVLDLGTGSGVLAIAAEKL---GGKALGVDIDPMVLPQAEANAKRNGVRP--RFLEGSLEA 178 (254)
T ss_dssp SHHHHHHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCGGGHHHHHHHHHHTTCCC--EEEESCHHH
T ss_pred cchhhHHHHHHHhhcCccCEEEEcccchhHHHHHHHhc---CCEEEEEECChHHHHHHHHHHHHcCCce--eEEeccccc
Confidence 445556665554 578999999999999999988764 4689999999999999999999999974 678888876
Q ss_pred ccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHH
Q 009708 399 FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVE 478 (528)
Q Consensus 399 ~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~ 478 (528)
... .++||+|+++... .. ..+++..+.+.|||||+|++|.- ..+..+.+.
T Consensus 179 ~~~--~~~fD~V~ani~~------------------~~-------l~~l~~~~~~~LkpGG~lilSgi---l~~~~~~v~ 228 (254)
T d2nxca1 179 ALP--FGPFDLLVANLYA------------------EL-------HAALAPRYREALVPGGRALLTGI---LKDRAPLVR 228 (254)
T ss_dssp HGG--GCCEEEEEEECCH------------------HH-------HHHHHHHHHHHEEEEEEEEEEEE---EGGGHHHHH
T ss_pred ccc--ccccchhhhcccc------------------cc-------HHHHHHHHHHhcCCCcEEEEEec---chhhHHHHH
Confidence 443 3689999986221 11 23457888899999999997642 223444555
Q ss_pred HHHhhCCCceEe
Q 009708 479 AFLLRHPEFSID 490 (528)
Q Consensus 479 ~~l~~~~~~~~~ 490 (528)
..+.++ +|++.
T Consensus 229 ~~~~~~-Gf~~~ 239 (254)
T d2nxca1 229 EAMAGA-GFRPL 239 (254)
T ss_dssp HHHHHT-TCEEE
T ss_pred HHHHHC-CCEEE
Confidence 666655 46554
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.45 E-value=8.6e-14 Score=136.57 Aligned_cols=116 Identities=12% Similarity=0.099 Sum_probs=93.5
Q ss_pred HHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCC
Q 009708 327 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVK 406 (528)
Q Consensus 327 ~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~ 406 (528)
+.....+.+|.+|||+|||+|+.+..+++.. +.+|+|+|+|+.+++.++++++..|+.++++++++|+.+++. ..++
T Consensus 59 l~~~~~l~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~-~~~s 135 (282)
T d2o57a1 59 LAMTGVLQRQAKGLDLGAGYGGAARFLVRKF--GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPC-EDNS 135 (282)
T ss_dssp HHHTTCCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSS-CTTC
T ss_pred HHHhcCCCCCCEEEEeCCCCcHHHhhhhccC--CcEEEEEeccchhhhhhhcccccccccccccccccccccccc-cccc
Confidence 3444567889999999999999999999874 468999999999999999999999998889999999998753 3478
Q ss_pred CCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 407 CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 407 fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
||+|++- +++.+-|+ ...+|+++.++|||||+|++.+..
T Consensus 136 fD~V~~~------~~l~h~~d----------------~~~~l~~~~~~LkpgG~l~~~~~~ 174 (282)
T d2o57a1 136 YDFIWSQ------DAFLHSPD----------------KLKVFQECARVLKPRGVMAITDPM 174 (282)
T ss_dssp EEEEEEE------SCGGGCSC----------------HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred cchhhcc------chhhhccC----------------HHHHHHHHHHhcCCCcEEEEEEee
Confidence 9999862 22222221 124699999999999999987654
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=1.1e-13 Score=131.41 Aligned_cols=122 Identities=16% Similarity=0.134 Sum_probs=94.3
Q ss_pred cceeEeecchHHHHHHhc--CCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCC----c
Q 009708 314 EGLCAVQDESAGLVVAVV--DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN----S 387 (528)
Q Consensus 314 ~G~~~~Qd~~s~l~~~~l--~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~----~ 387 (528)
.|.+..|-.....+.++| +++||++|||+|||+|..|..+|+++++.++|+++|+++.+++.+++|+++.++. +
T Consensus 53 ~~~~is~P~~~a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~ 132 (224)
T d1i1na_ 53 FQATISAPHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSG 132 (224)
T ss_dssp TTEEECCHHHHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTS
T ss_pred chhhhhhhHHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCccccccc
Confidence 355555433344555566 6789999999999999999999998888899999999999999999999987753 2
Q ss_pred cEEEEcCccccccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 388 VIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 388 ~i~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
++.++++|+...... ...||+|+++..+. .- .+...+.|||||+||..
T Consensus 133 ~~~~~~gD~~~~~~~-~~~fD~I~~~~~~~------~i----------------------p~~l~~~LkpGG~LV~p 180 (224)
T d1i1na_ 133 RVQLVVGDGRMGYAE-EAPYDAIHVGAAAP------VV----------------------PQALIDQLKPGGRLILP 180 (224)
T ss_dssp SEEEEESCGGGCCGG-GCCEEEEEECSBBS------SC----------------------CHHHHHTEEEEEEEEEE
T ss_pred ceEEEEeecccccch-hhhhhhhhhhcchh------hc----------------------CHHHHhhcCCCcEEEEE
Confidence 488899998875543 36899999875441 11 23356789999999953
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.41 E-value=1.1e-12 Score=129.24 Aligned_cols=133 Identities=13% Similarity=0.076 Sum_probs=101.8
Q ss_pred ecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccc
Q 009708 320 QDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 399 (528)
Q Consensus 320 Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~ 399 (528)
|.....++++.+++++|++|||+|||.|+.+.++|+.. +.+|+|+++|+..++.++++++..|+.+++++...|....
T Consensus 46 q~~k~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~--g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~ 123 (291)
T d1kpia_ 46 QYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEY--DVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF 123 (291)
T ss_dssp HHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC
T ss_pred HHHHHHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhc--CcceeeccchHHHHHHHHHHHHhhccchhhhhhhhccccc
Confidence 33445667788899999999999999999999999875 3699999999999999999999999998899888887532
Q ss_pred cccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCch
Q 009708 400 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPE 471 (528)
Q Consensus 400 ~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~ 471 (528)
.++||.|++- |++-+-++..-. ...+.+..+++.+.++|||||+++..+.++...
T Consensus 124 ----~~~fD~i~si------e~~eH~~~~~~~-------~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~~~~ 178 (291)
T d1kpia_ 124 ----DEPVDRIVSL------GAFEHFADGAGD-------AGFERYDTFFKKFYNLTPDDGRMLLHTITIPDK 178 (291)
T ss_dssp ----CCCCSEEEEE------SCGGGTTCCSSC-------CSTTHHHHHHHHHHHTSCTTCEEEEEEEECCCH
T ss_pred ----ccccceEeec------hhHHhcchhhhh-------hHHHHHHHHHHHHHHhCCCCCceEEEEEeccCc
Confidence 3689999863 333222211000 011234567999999999999999888776543
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=99.41 E-value=2e-13 Score=124.27 Aligned_cols=81 Identities=14% Similarity=0.131 Sum_probs=64.9
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccc-cccCCCCCCEEE
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF-ADNSTVKCDKVL 411 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~-~~~~~~~fD~Vl 411 (528)
...|.+|||+|||+|+.++.++.+ +.+++++|+|+.+++.+++|++.+|+.+++....+|.... ......+||+|+
T Consensus 39 ~~~g~~vLDl~~G~G~~~i~a~~~---ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If 115 (171)
T d1ws6a1 39 YPRRGRFLDPFAGSGAVGLEAASE---GWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAF 115 (171)
T ss_dssp CTTCCEEEEETCSSCHHHHHHHHT---TCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEE
T ss_pred ccCCCeEEEeccccchhhhhhhhc---cchhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeE
Confidence 356889999999999999988775 4689999999999999999999999987555444443321 122346899999
Q ss_pred EcCCC
Q 009708 412 LDAPC 416 (528)
Q Consensus 412 ~D~Pc 416 (528)
+|||+
T Consensus 116 ~DPPY 120 (171)
T d1ws6a1 116 MAPPY 120 (171)
T ss_dssp ECCCT
T ss_pred Ecccc
Confidence 99998
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=99.41 E-value=3.8e-13 Score=123.75 Aligned_cols=80 Identities=16% Similarity=0.224 Sum_probs=71.6
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDA 414 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~ 414 (528)
.+.+|||+|||+|..++.++.+ +..+|++||.++..++.+++|++.++..+ ++++++|+..+......+||+|++||
T Consensus 43 ~~~~vLDlfaGsG~~giealsr--Ga~~v~~VE~~~~a~~~~k~N~~~~~~~~-~~ii~~d~~~~l~~~~~~fDlIf~DP 119 (183)
T d2fpoa1 43 VDAQCLDCFAGSGALGLEALSR--YAAGATLIEMDRAVSQQLIKNLATLKAGN-ARVVNSNAMSFLAQKGTPHNIVFVDP 119 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHT--TCSEEEEECSCHHHHHHHHHHHHHTTCCS-EEEECSCHHHHHSSCCCCEEEEEECC
T ss_pred chhhhhhhhccccceeeeEEec--CcceeEEEEEeechhhHHHHHHhhccccc-eeeeeecccccccccccccCEEEEcC
Confidence 4779999999999999998886 45699999999999999999999999876 89999999988765567899999999
Q ss_pred CCC
Q 009708 415 PCS 417 (528)
Q Consensus 415 Pcs 417 (528)
|+.
T Consensus 120 PY~ 122 (183)
T d2fpoa1 120 PFR 122 (183)
T ss_dssp SSS
T ss_pred ccc
Confidence 983
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.40 E-value=9.6e-13 Score=123.02 Aligned_cols=115 Identities=14% Similarity=0.143 Sum_probs=91.0
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc-CCCCCCEEEEc
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCDKVLLD 413 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~-~~~~fD~Vl~D 413 (528)
++..|||+|||+|..++.+|+. .+...++|+|+++.++..+.+++++.|++| +.++++|+..+... ..+.+|.|++.
T Consensus 29 ~~PlvLeIGcG~G~~~~~lA~~-~p~~~~iGiD~~~~~i~~a~~~~~~~~l~N-v~~~~~Da~~l~~~~~~~~~d~v~i~ 106 (204)
T d2fcaa1 29 DNPIHIEVGTGKGQFISGMAKQ-NPDINYIGIELFKSVIVTAVQKVKDSEAQN-VKLLNIDADTLTDVFEPGEVKRVYLN 106 (204)
T ss_dssp CCCEEEEECCTTSHHHHHHHHH-CTTSEEEEECSCHHHHHHHHHHHHHSCCSS-EEEECCCGGGHHHHCCTTSCCEEEEE
T ss_pred CCceEEEEEecCcHHHHHHHHh-CCCCcEEEeecchHHHHHHHHHHHHHhccC-chhcccchhhhhcccCchhhhccccc
Confidence 3558999999999999999997 567899999999999999999999999987 99999999887543 25789999877
Q ss_pred CCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 414 APCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 414 ~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
-|.- +.+.+..+.+. ++..+|+.+.++|||||.|++.|
T Consensus 107 fp~P----~~k~~h~k~Rl----------~~~~~l~~~~r~LkpgG~l~i~T 144 (204)
T d2fcaa1 107 FSDP----WPKKRHEKRRL----------TYSHFLKKYEEVMGKGGSIHFKT 144 (204)
T ss_dssp SCCC----CCSGGGGGGST----------TSHHHHHHHHHHHTTSCEEEEEE
T ss_pred cccc----cchhhhcchhh----------hHHHHHHHHHHhCCCCcEEEEEE
Confidence 5542 11112222211 23467999999999999999877
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=99.39 E-value=4.3e-13 Score=123.25 Aligned_cols=81 Identities=21% Similarity=0.300 Sum_probs=72.0
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---CCCCCCEE
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---STVKCDKV 410 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---~~~~fD~V 410 (528)
..|.+|||+|||+|+.++.++.+ +..+|++||.++..++.+++|++.++..++++++++|+..+... ...+||+|
T Consensus 40 ~~~~~vLDlfaGsG~~g~ea~sr--Ga~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlI 117 (182)
T d2fhpa1 40 FDGGMALDLYSGSGGLAIEAVSR--GMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLV 117 (182)
T ss_dssp CSSCEEEETTCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred cCCCEEEEcccccccccceeeec--chhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcceE
Confidence 46889999999999999999886 46689999999999999999999999987899999999876543 24689999
Q ss_pred EEcCCC
Q 009708 411 LLDAPC 416 (528)
Q Consensus 411 l~D~Pc 416 (528)
++|||+
T Consensus 118 flDPPY 123 (182)
T d2fhpa1 118 LLDPPY 123 (182)
T ss_dssp EECCCG
T ss_pred Eechhh
Confidence 999998
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.38 E-value=1.2e-12 Score=123.98 Aligned_cols=115 Identities=18% Similarity=0.125 Sum_probs=89.6
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEE
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVL 411 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl 411 (528)
.+++.+|||+|||+|..+..+++.+. +..+|+|+|+|+.+++.|+++++..+....+++.++|..++.. ..+|.|+
T Consensus 37 ~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~---~~~d~i~ 113 (225)
T d1im8a_ 37 VTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI---KNASMVI 113 (225)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCC---CSEEEEE
T ss_pred cCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhcccc---ccceeeE
Confidence 35788999999999999999998653 4679999999999999999999998887778999999887653 5688887
Q ss_pred EcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCc
Q 009708 412 LDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDP 470 (528)
Q Consensus 412 ~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~ 470 (528)
+. +. +.. .+.++. ..+|+++++.|||||.+++++.+...
T Consensus 114 ~~---~~---l~~-------~~~~d~-------~~~l~~i~~~LkpgG~li~~~~~~~~ 152 (225)
T d1im8a_ 114 LN---FT---LQF-------LPPEDR-------IALLTKIYEGLNPNGVLVLSEKFRFE 152 (225)
T ss_dssp EE---SC---GGG-------SCGGGH-------HHHHHHHHHHEEEEEEEEEEEECCCS
T ss_pred Ee---ee---ccc-------cChhhH-------HHHHHHHHHhCCCCceeecccccccc
Confidence 62 21 111 112232 24699999999999999988665443
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.38 E-value=1.1e-12 Score=121.57 Aligned_cols=108 Identities=21% Similarity=0.226 Sum_probs=87.0
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEE
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 412 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~ 412 (528)
+.+| +|||+|||+|..+..++++ +.+|+|+|+|+.+++.++++++..|+++ +++...|+..+.. .++||+|++
T Consensus 29 ~~~g-rvLDiGcG~G~~~~~la~~---g~~v~gvD~s~~~l~~a~~~~~~~~~~~-~~~~~~d~~~~~~--~~~fD~I~~ 101 (198)
T d2i6ga1 29 VAPG-RTLDLGCGNGRNSLYLAAN---GYDVTAWDKNPASMANLERIKAAEGLDN-LQTDLVDLNTLTF--DGEYDFILS 101 (198)
T ss_dssp SCSC-EEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCTT-EEEEECCTTTCCC--CCCEEEEEE
T ss_pred CCCC-cEEEECCCCCHHHHHHHHH---hhhhccccCcHHHHHHHHHHhhhccccc-hhhhheecccccc--cccccEEEE
Confidence 4455 9999999999999999986 4689999999999999999999999986 8899999987664 378999997
Q ss_pred cCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 413 DAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 413 D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
.... ..-| .... ..+++.+.++|+|||++++.+..
T Consensus 102 ~~~~------~~~~-------~~~~-------~~~l~~~~~~L~pgG~~~~~~~~ 136 (198)
T d2i6ga1 102 TVVM------MFLE-------AQTI-------PGLIANMQRCTKPGGYNLIVAAM 136 (198)
T ss_dssp ESCG------GGSC-------TTHH-------HHHHHHHHHTEEEEEEEEEEEEB
T ss_pred eeee------ecCC-------HHHH-------HHHHHHHHHHcCCCcEEEEEEec
Confidence 5433 1111 1222 34699999999999999987654
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.38 E-value=1.4e-12 Score=127.89 Aligned_cols=118 Identities=13% Similarity=0.180 Sum_probs=94.1
Q ss_pred hHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc
Q 009708 323 SAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 402 (528)
Q Consensus 323 ~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~ 402 (528)
.-..+.+.++++||++|||+|||.|+.+.++++.. +.+|+|+|+|+..++.++++++..|+...+.+...|...+.
T Consensus 40 k~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~--g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~~-- 115 (280)
T d2fk8a1 40 KVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERF--DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA-- 115 (280)
T ss_dssp HHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC--
T ss_pred HHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhC--ceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhhc--
Confidence 34556777889999999999999999999998874 36999999999999999999999999888888888877653
Q ss_pred CCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcC
Q 009708 403 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466 (528)
Q Consensus 403 ~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTc 466 (528)
++||.|++- +++-+-++ .. ...+++.+.++|||||+++..+.
T Consensus 116 --~~fD~i~si------~~~eh~~~-------~~-------~~~~f~~i~~~LkpgG~~~i~~i 157 (280)
T d2fk8a1 116 --EPVDRIVSI------EAFEHFGH-------EN-------YDDFFKRCFNIMPADGRMTVQSS 157 (280)
T ss_dssp --CCCSEEEEE------SCGGGTCG-------GG-------HHHHHHHHHHHSCTTCEEEEEEE
T ss_pred --cchhhhhHh------hHHHHhhh-------hh-------HHHHHHHHHhccCCCceEEEEEe
Confidence 679999862 22222111 11 24569999999999999998653
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.37 E-value=1.3e-12 Score=124.97 Aligned_cols=111 Identities=22% Similarity=0.245 Sum_probs=86.5
Q ss_pred CCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEE
Q 009708 332 DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVL 411 (528)
Q Consensus 332 ~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl 411 (528)
...++.+|||+|||+|..+..+++. +.+|+|||+|+.+++.++++++..+.. ++++++|+.++.. +++||.|+
T Consensus 38 ~~~~~~~iLDiGcGtG~~~~~l~~~---~~~v~gvD~s~~mi~~a~~~~~~~~~~--i~~~~~d~~~l~~--~~~fD~I~ 110 (251)
T d1wzna1 38 AKREVRRVLDLACGTGIPTLELAER---GYEVVGLDLHEEMLRVARRKAKERNLK--IEFLQGDVLEIAF--KNEFDAVT 110 (251)
T ss_dssp CSSCCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCC--CEEEESCGGGCCC--CSCEEEEE
T ss_pred cCCCCCEEEEeCCCCCccchhhccc---ceEEEEEeecccccccccccccccccc--chheehhhhhccc--ccccchHh
Confidence 4556779999999999999999985 468999999999999999999998874 7899999998864 36899999
Q ss_pred EcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCC
Q 009708 412 LDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 468 (528)
Q Consensus 412 ~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~ 468 (528)
+ ++. ++.. .+..+. .++|+++.++|||||+++.....+
T Consensus 111 ~----~~~-~~~~-------~~~~~~-------~~~L~~~~~~LkpgG~lii~~~~~ 148 (251)
T d1wzna1 111 M----FFS-TIMY-------FDEEDL-------RKLFSKVAEALKPGGVFITDFPCW 148 (251)
T ss_dssp E----CSS-GGGG-------SCHHHH-------HHHHHHHHHHEEEEEEEEEEEEC-
T ss_pred h----hhh-hhhc-------CChHHH-------HHHHHHHHHHcCCCcEEEEEeccc
Confidence 6 211 1111 122222 356999999999999999876553
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.36 E-value=1.5e-12 Score=127.91 Aligned_cols=119 Identities=16% Similarity=0.218 Sum_probs=96.7
Q ss_pred hHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc
Q 009708 323 SAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 402 (528)
Q Consensus 323 ~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~ 402 (528)
-..++++.++++||++|||+|||.|+.++++|+.. +.+|+|+++|+..++.++++++..|+.+++++..+|...++
T Consensus 50 k~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~--g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~-- 125 (285)
T d1kpga_ 50 KIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKY--DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD-- 125 (285)
T ss_dssp HHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC--
T ss_pred HHHHHHHHcCCCCCCEEEEecCcchHHHHHHHhcC--CcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhccc--
Confidence 34667788899999999999999999999999874 47999999999999999999999999988999999987654
Q ss_pred CCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 403 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 403 ~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
++||.|++= |++-+-.. +.+..+++.+.++|||||+++..+.+
T Consensus 126 --~~fD~i~si------~~~eh~~~--------------~~~~~~~~~~~r~LkpgG~~~l~~i~ 168 (285)
T d1kpga_ 126 --EPVDRIVSI------GAFEHFGH--------------ERYDAFFSLAHRLLPADGVMLLHTIT 168 (285)
T ss_dssp --CCCSEEEEE------SCGGGTCT--------------TTHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred --ccccceeee------hhhhhcCc--------------hhHHHHHHHHHhhcCCCCcEEEEEEe
Confidence 579999852 22211110 11245799999999999999977665
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=99.36 E-value=3.7e-12 Score=129.01 Aligned_cols=152 Identities=21% Similarity=0.245 Sum_probs=107.1
Q ss_pred HHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC--
Q 009708 326 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS-- 403 (528)
Q Consensus 326 l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~-- 403 (528)
.+.+++++.++++|||++||.|.+|+.+|+. ..+|+|+|.++..++.|++|++.+|++| ++++++|........
T Consensus 203 ~v~~~~~~~~~~~vlDLycG~G~fsl~La~~---~~~V~gvE~~~~ai~~A~~na~~n~i~n-~~~~~~~~~~~~~~~~~ 278 (358)
T d1uwva2 203 RALEWLDVQPEDRVLDLFCGMGNFTLPLATQ---AASVVGVEGVPALVEKGQQNARLNGLQN-VTFYHENLEEDVTKQPW 278 (358)
T ss_dssp HHHHHHTCCTTCEEEEESCTTTTTHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEECCTTSCCSSSGG
T ss_pred HHHHhhccCCCceEEEecccccccchhcccc---ccEEEeccCcHHHHHHHHHhHHhccccc-ceeeecchhhhhhhhhh
Confidence 3556678888999999999999999999874 5799999999999999999999999997 899999887654322
Q ss_pred -CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHHHh
Q 009708 404 -TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLL 482 (528)
Q Consensus 404 -~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~l~ 482 (528)
...||+|++|||-+|.+- .+ ....+ ++| -+|||.+|....- ..-+..+++
T Consensus 279 ~~~~~d~vilDPPR~G~~~--------------~~-----------~~l~~-~~~-~~ivYVSCnp~Tl--aRDl~~l~~ 329 (358)
T d1uwva2 279 AKNGFDKVLLDPARAGAAG--------------VM-----------QQIIK-LEP-IRIVYVSCNPATL--ARDSEALLK 329 (358)
T ss_dssp GTTCCSEEEECCCTTCCHH--------------HH-----------HHHHH-HCC-SEEEEEESCHHHH--HHHHHHHHH
T ss_pred hhccCceEEeCCCCccHHH--------------HH-----------HHHHH-cCC-CEEEEEeCCHHHH--HHHHHHHHH
Confidence 467999999999987321 12 22222 133 4799999963221 111222333
Q ss_pred hCCCceEecCCCCCCCccccCCceEEEcCCCCCCCceEEEEEEe
Q 009708 483 RHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLVR 526 (528)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~~~dGff~a~l~k 526 (528)
.+|++..+.+ +-.+||.+..+- +|.|+|
T Consensus 330 --~gy~l~~i~~------------~D~FP~T~HvE~--v~~l~R 357 (358)
T d1uwva2 330 --AGYTIARLAM------------LDMFPHTGHLES--MVLFSR 357 (358)
T ss_dssp --TTCEEEEEEE------------ECCSTTSSCCEE--EEEEEC
T ss_pred --CCCeEeEEEE------------EecCCCCccEEE--EEEEEe
Confidence 3566655421 234677766665 667766
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.35 E-value=1.5e-12 Score=122.19 Aligned_cols=106 Identities=18% Similarity=0.269 Sum_probs=83.2
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEc
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLD 413 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D 413 (528)
.++++|||+|||+|..+..+++. +.+|+|+|+|+.+++.+++++...+.. +.++++|+.+++. ..++||+|++-
T Consensus 36 ~~~~~ILDiGcG~G~~~~~la~~---~~~v~giD~S~~~i~~ak~~~~~~~~~--~~~~~~d~~~l~~-~~~~fD~I~~~ 109 (226)
T d1ve3a1 36 KKRGKVLDLACGVGGFSFLLEDY---GFEVVGVDISEDMIRKAREYAKSRESN--VEFIVGDARKLSF-EDKTFDYVIFI 109 (226)
T ss_dssp CSCCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCC--CEEEECCTTSCCS-CTTCEEEEEEE
T ss_pred CCCCEEEEECCCcchhhhhHhhh---hcccccccccccchhhhhhhhcccccc--ccccccccccccc-cCcCceEEEEe
Confidence 46789999999999999999975 468999999999999999999888754 5788899988753 34789999963
Q ss_pred CCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 414 APCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 414 ~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
+++.. ....+. .++|+++.++|||||++++.+
T Consensus 110 ------~~l~~-------~~~~d~-------~~~l~~i~~~LkpgG~lii~~ 141 (226)
T d1ve3a1 110 ------DSIVH-------FEPLEL-------NQVFKEVRRVLKPSGKFIMYF 141 (226)
T ss_dssp ------SCGGG-------CCHHHH-------HHHHHHHHHHEEEEEEEEEEE
T ss_pred ------cchhh-------CChhHH-------HHHHHHHHHHcCcCcEEEEEE
Confidence 12221 112232 346999999999999988654
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.34 E-value=2.5e-12 Score=122.47 Aligned_cols=106 Identities=19% Similarity=0.241 Sum_probs=81.1
Q ss_pred cCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCE-
Q 009708 331 VDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDK- 409 (528)
Q Consensus 331 l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~- 409 (528)
+.++||++|||+|||+|..+.++|.. .+.+.|+|+|+|+.+++.++++++..+ + +.++..|...........+|.
T Consensus 70 l~ikpG~~VLDlGcGsG~~~~~la~~-~~~g~V~aVDiS~~~i~~a~~~a~~~~--n-i~~i~~d~~~~~~~~~~~~~v~ 145 (230)
T d1g8sa_ 70 MPIKRDSKILYLGASAGTTPSHVADI-ADKGIVYAIEYAPRIMRELLDACAERE--N-IIPILGDANKPQEYANIVEKVD 145 (230)
T ss_dssp CCCCTTCEEEEESCCSSHHHHHHHHH-TTTSEEEEEESCHHHHHHHHHHTTTCT--T-EEEEECCTTCGGGGTTTCCCEE
T ss_pred CCCCCCCEEEEeCEEcCHHHHHHHHh-CCCCEEEEEeCcHHHHHHHHHHHhhhc--c-cceEEEeeccCcccccccceeE
Confidence 45789999999999999999999997 456899999999999999998876643 3 667888887765544344554
Q ss_pred -EEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 410 -VLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 410 -Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
++.|..+. . ....++.++.++|||||+++.+
T Consensus 146 ~i~~~~~~~-----------------~-------~~~~~l~~~~r~LKpgG~~~i~ 177 (230)
T d1g8sa_ 146 VIYEDVAQP-----------------N-------QAEILIKNAKWFLKKGGYGMIA 177 (230)
T ss_dssp EEEECCCST-----------------T-------HHHHHHHHHHHHEEEEEEEEEE
T ss_pred Eeeccccch-----------------H-------HHHHHHHHHHHhcccCceEEEE
Confidence 44443331 1 1234689999999999998876
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.34 E-value=1.1e-12 Score=126.43 Aligned_cols=113 Identities=17% Similarity=0.169 Sum_probs=86.7
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEE
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 412 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~ 412 (528)
..+|.+|||+|||+|+.+..++.. +.++|+|+|+|+.+++.|+++++..+....+.+.++|+........++||+|++
T Consensus 22 ~~~~~~VLDlGCG~G~~~~~~~~~--~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~ 99 (252)
T d1ri5a_ 22 TKRGDSVLDLGCGKGGDLLKYERA--GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISS 99 (252)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHH--TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEE
T ss_pred CCCcCEEEEecccCcHHHHHHHHc--CCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEE
Confidence 457889999999999999988875 346899999999999999999998888767999999997654434568999986
Q ss_pred cCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 413 DAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 413 D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
. +++...+ .+.+++ ..++.++.++|||||+++.++
T Consensus 100 ~------~~l~~~~-----~~~~~~-------~~~l~~i~~~Lk~gG~~i~~~ 134 (252)
T d1ri5a_ 100 Q------FSFHYAF-----STSESL-------DIAQRNIARHLRPGGYFIMTV 134 (252)
T ss_dssp E------SCGGGGG-----SSHHHH-------HHHHHHHHHTEEEEEEEEEEE
T ss_pred c------ceeeecC-----CCHHHH-------HHHHHHHhceeCCCCEEEEEe
Confidence 3 1111110 122333 446999999999999998654
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.33 E-value=1.8e-12 Score=124.08 Aligned_cols=106 Identities=16% Similarity=0.183 Sum_probs=83.2
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDA 414 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~ 414 (528)
++.+|||+|||+|..+..+++. +.+|+|+|.|+.+++.|+++++..|.+ ++++++|+.++.. .++||.|++-
T Consensus 37 ~~~~vLDiGCG~G~~~~~l~~~---g~~v~GvD~S~~ml~~A~~~~~~~~~~--v~~~~~d~~~~~~--~~~fD~i~~~- 108 (246)
T d1y8ca_ 37 VFDDYLDLACGTGNLTENLCPK---FKNTWAVDLSQEMLSEAENKFRSQGLK--PRLACQDISNLNI--NRKFDLITCC- 108 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGG---SSEEEEECSCHHHHHHHHHHHHHTTCC--CEEECCCGGGCCC--SCCEEEEEEC-
T ss_pred CCCeEEEEeCcCCHHHHHHHHh---CCccEeeccchhhhhhccccccccCcc--ceeeccchhhhcc--ccccccccee-
Confidence 3569999999999999999876 458999999999999999999988874 7899999998753 3689999961
Q ss_pred CCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 415 PCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 415 Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
++..+. ..+.++. ..+|+.+.++|||||.+++..
T Consensus 109 -~~~~~~---------~~~~~~~-------~~~l~~~~~~LkpgG~~i~~~ 142 (246)
T d1y8ca_ 109 -LDSTNY---------IIDSDDL-------KKYFKAVSNHLKEGGVFIFDI 142 (246)
T ss_dssp -TTGGGG---------CCSHHHH-------HHHHHHHHTTEEEEEEEEEEE
T ss_pred -eeeeec---------cCCHHHH-------HHHHHHHHHhCCCCeEEEEEe
Confidence 111111 1223333 345999999999999999754
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.32 E-value=2.7e-12 Score=119.70 Aligned_cols=81 Identities=17% Similarity=0.267 Sum_probs=68.6
Q ss_pred HhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCC
Q 009708 329 AVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCD 408 (528)
Q Consensus 329 ~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD 408 (528)
...+.-.|.+|||+|||+|+.++.++.+ +..+|+|+|+|+.+++.+++|++.++.. .+++++|+..+. .+||
T Consensus 40 ~~~~dl~g~~vLDlg~GtG~l~i~a~~~--g~~~v~~vdi~~~~~~~a~~N~~~~~~~--~~~~~~d~~~~~----~~fD 111 (201)
T d1wy7a1 40 YSLGDIEGKVVADLGAGTGVLSYGALLL--GAKEVICVEVDKEAVDVLIENLGEFKGK--FKVFIGDVSEFN----SRVD 111 (201)
T ss_dssp HHTTSSTTCEEEEETCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHTGGGTTS--EEEEESCGGGCC----CCCS
T ss_pred HhcCCCCCCEEEECcCcchHHHHHHHHc--CCCEEEEEcCcHHHHHHHHHHHHHcCCC--ceEEECchhhhC----CcCc
Confidence 3444456889999999999999988764 4569999999999999999999999876 678899987753 6799
Q ss_pred EEEEcCCCC
Q 009708 409 KVLLDAPCS 417 (528)
Q Consensus 409 ~Vl~D~Pcs 417 (528)
+|++||||.
T Consensus 112 ~Vi~nPP~~ 120 (201)
T d1wy7a1 112 IVIMNPPFG 120 (201)
T ss_dssp EEEECCCCS
T ss_pred EEEEcCccc
Confidence 999999994
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.31 E-value=1.5e-12 Score=122.56 Aligned_cols=119 Identities=15% Similarity=0.218 Sum_probs=95.2
Q ss_pred ccceeEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEE
Q 009708 313 KEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTI 392 (528)
Q Consensus 313 ~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~ 392 (528)
..|.+..+......+.+.+++++|++|||+|||+|..|..+|...+ ++|+++|+++..++.+++|+++.|+.| +.++
T Consensus 56 ~~g~~is~P~~~a~ml~~L~l~~g~~VLeIGsGsGY~taila~l~g--~~V~~ie~~~~l~~~a~~~l~~~g~~n-v~~~ 132 (215)
T d1jg1a_ 56 PAGQTVSAPHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLERAGVKN-VHVI 132 (215)
T ss_dssp STTCEECCHHHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHTTCCS-EEEE
T ss_pred chhhhhhhhhhHHHHHHhhccCccceEEEecCCCChhHHHHHHhhC--ceeEEEeccHHHHHHHHHHHHHcCCce-eEEE
Confidence 3566666555556677889999999999999999999999998753 679999999999999999999999987 8999
Q ss_pred cCccccccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEE
Q 009708 393 HADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463 (528)
Q Consensus 393 ~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvy 463 (528)
++|...-.+. ..+||+|++.+.+. .-| ......|||||+||.
T Consensus 133 ~gd~~~g~~~-~~pfD~Iiv~~a~~------~ip----------------------~~l~~qL~~gGrLv~ 174 (215)
T d1jg1a_ 133 LGDGSKGFPP-KAPYDVIIVTAGAP------KIP----------------------EPLIEQLKIGGKLII 174 (215)
T ss_dssp ESCGGGCCGG-GCCEEEEEECSBBS------SCC----------------------HHHHHTEEEEEEEEE
T ss_pred ECccccCCcc-cCcceeEEeecccc------cCC----------------------HHHHHhcCCCCEEEE
Confidence 9999875433 37899999865442 222 123456999999995
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.31 E-value=4.5e-12 Score=118.35 Aligned_cols=114 Identities=18% Similarity=0.162 Sum_probs=90.1
Q ss_pred CCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC-CCCCCEEEEcC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS-TVKCDKVLLDA 414 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~-~~~fD~Vl~D~ 414 (528)
+..|||+|||+|..++.+|+. .+...++|+|+++.++..+.+++++.+++| +.++++|+..+.... ..++|.|++.-
T Consensus 32 ~plvLdIGcG~G~~~~~lA~~-~p~~~~iGid~~~~~v~~a~~~~~~~~l~N-i~~~~~da~~l~~~~~~~~~~~i~i~f 109 (204)
T d1yzha1 32 NPIHVEVGSGKGAFVSGMAKQ-NPDINYIGIDIQKSVLSYALDKVLEVGVPN-IKLLWVDGSDLTDYFEDGEIDRLYLNF 109 (204)
T ss_dssp CCEEEEESCTTSHHHHHHHHH-CTTSEEEEEESCHHHHHHHHHHHHHHCCSS-EEEEECCSSCGGGTSCTTCCSEEEEES
T ss_pred CCeEEEEeccCCHHHHHHHHH-CCCCceEEEeccHHHHHHHHHhhhhhcccc-ceeeecCHHHHhhhccCCceehhcccc
Confidence 458999999999999999997 457899999999999999999999999997 999999998876433 56899998865
Q ss_pred CCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 415 PCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 415 Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
|.- +.+....+.+ + +|..+|+.+.++|||||.|.++|
T Consensus 110 PdP----w~K~~h~krR--------l--~~~~~l~~~~~~LkpgG~l~i~T 146 (204)
T d1yzha1 110 SDP----WPKKRHEKRR--------L--TYKTFLDTFKRILPENGEIHFKT 146 (204)
T ss_dssp CCC----CCSGGGGGGS--------T--TSHHHHHHHHHHSCTTCEEEEEE
T ss_pred ccc----ccchhhhhhh--------h--hHHHHHHHHHHhCCCCcEEEEEE
Confidence 541 1111111111 1 34567999999999999999877
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=99.30 E-value=7.8e-12 Score=121.46 Aligned_cols=120 Identities=13% Similarity=0.199 Sum_probs=88.6
Q ss_pred CCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAP 415 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~P 415 (528)
..+|+|+|||+|..++.+++. +..+|+|+|+|+.+++.+++|++++|+.+++.+.++|.........++||+|++|||
T Consensus 111 ~~~vld~g~GsG~i~~~la~~--~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVsNPP 188 (271)
T d1nv8a_ 111 IKTVADIGTGSGAIGVSVAKF--SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPP 188 (271)
T ss_dssp CCEEEEESCTTSHHHHHHHHH--SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCC
T ss_pred ccEEEEeeeeeehhhhhhhhc--ccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccccccCcccEEEEccc
Confidence 458999999999999998864 468999999999999999999999999988999999988765544578999999999
Q ss_pred CCCCccccCCchhhccCCHHH-H---HHHHHHHHHHHHHHhccCcCCCEEEE
Q 009708 416 CSGLGVLSKRADLRWNRRLED-M---EELKILQDELLDAASLLVKPGGVLVY 463 (528)
Q Consensus 416 csg~G~~~~~pd~~~~~~~~~-~---~~l~~~q~~lL~~a~~~LkpGG~Lvy 463 (528)
|-...-. ..++++|. +.. + ......+++++ .++|+|||.+++
T Consensus 189 YI~~~~~-l~~~~~~E--P~~AL~gg~dGl~~~r~i~---~~~L~~~G~l~~ 234 (271)
T d1nv8a_ 189 YVKSSAH-LPKDVLFE--PPEALFGGEDGLDFYREFF---GRYDTSGKIVLM 234 (271)
T ss_dssp CBCGGGS-CTTSCCCS--CHHHHBCTTTSCHHHHHHH---HHCCCTTCEEEE
T ss_pred ccCcccc-cceeeeec--cccccccccchHHHHHHHH---HHhcCCCCEEEE
Confidence 9543321 11222221 110 0 11123455565 368999998874
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.30 E-value=2.5e-12 Score=121.71 Aligned_cols=115 Identities=18% Similarity=0.192 Sum_probs=87.5
Q ss_pred cceeEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEc
Q 009708 314 EGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH 393 (528)
Q Consensus 314 ~G~~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~ 393 (528)
.|....+-.....+.+.+++++|++|||+|||+|..|..+|.+ .++|+++|+++..++.+++++... . ++.+++
T Consensus 49 ~g~~~~~p~~~a~ml~~L~l~~g~~VLdIG~GsGy~ta~La~l---~~~V~aiE~~~~~~~~A~~~~~~~--~-nv~~~~ 122 (224)
T d1vbfa_ 49 PGINTTALNLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEI---VDKVVSVEINEKMYNYASKLLSYY--N-NIKLIL 122 (224)
T ss_dssp TTEEECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEEESCHHHHHHHHHHHTTC--S-SEEEEE
T ss_pred CCCceehhhhHHHHHHHhhhcccceEEEecCCCCHHHHHHHHH---hcccccccccHHHHHHHHHHHhcc--c-cccccc
Confidence 3444444434445677889999999999999999999999987 479999999999999999987653 4 489999
Q ss_pred CccccccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEE
Q 009708 394 ADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463 (528)
Q Consensus 394 ~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvy 463 (528)
+|.....+. ..+||+|++++.+. .- .....+.|||||+||.
T Consensus 123 ~d~~~g~~~-~~pfD~Iiv~~a~~------~i----------------------p~~l~~qLk~GGrLV~ 163 (224)
T d1vbfa_ 123 GDGTLGYEE-EKPYDRVVVWATAP------TL----------------------LCKPYEQLKEGGIMIL 163 (224)
T ss_dssp SCGGGCCGG-GCCEEEEEESSBBS------SC----------------------CHHHHHTEEEEEEEEE
T ss_pred Cchhhcchh-hhhHHHHHhhcchh------hh----------------------hHHHHHhcCCCCEEEE
Confidence 998764332 36799999865441 11 2234567999999995
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.28 E-value=1.6e-12 Score=119.13 Aligned_cols=116 Identities=8% Similarity=0.037 Sum_probs=85.1
Q ss_pred hcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCC-----------ccEEEEcCcccc
Q 009708 330 VVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN-----------SVIRTIHADLRT 398 (528)
Q Consensus 330 ~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~-----------~~i~~~~~D~~~ 398 (528)
.+.+.||.+|||+|||+|..+.++|++ +.+|+|+|+|+.+++.++++++..+.. ..++++++|+..
T Consensus 15 ~l~~~~~~rvLd~GCG~G~~a~~la~~---G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 91 (201)
T d1pjza_ 15 SLNVVPGARVLVPLCGKSQDMSWLSGQ---GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFA 91 (201)
T ss_dssp HHCCCTTCEEEETTTCCSHHHHHHHHH---CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSS
T ss_pred HcCCCCCCEEEEecCcCCHHHHHHHHc---CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccc
Confidence 357889999999999999999999986 579999999999999999988655431 124677777777
Q ss_pred ccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCC
Q 009708 399 FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 468 (528)
Q Consensus 399 ~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~ 468 (528)
+.......||.|++-- ++..- ...+. ...++.++++|||||.++..+.+.
T Consensus 92 l~~~~~~~~D~i~~~~------~l~~l-------~~~~~-------~~~~~~i~~~LkpgG~l~l~~~~~ 141 (201)
T d1pjza_ 92 LTARDIGHCAAFYDRA------AMIAL-------PADMR-------ERYVQHLEALMPQACSGLLITLEY 141 (201)
T ss_dssp STHHHHHSEEEEEEES------CGGGS-------CHHHH-------HHHHHHHHHHSCSEEEEEEEEESS
T ss_pred cccccccceeEEEEEe------eeEec-------chhhh-------HHHHHHHHHhcCCCcEEEEEEccc
Confidence 6544345799988521 11111 11222 345899999999999987766553
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.27 E-value=2e-12 Score=122.90 Aligned_cols=111 Identities=17% Similarity=0.160 Sum_probs=85.7
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC-CCCCCEEEE
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS-TVKCDKVLL 412 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~-~~~fD~Vl~ 412 (528)
.+|.+|||+|||+|..+..+++. +..+|+++|+|+.+++.++++++..+.. +.++..|+....... .++||.|+.
T Consensus 52 ~~g~~VLdIGcG~G~~a~~~a~~--~~~~v~~id~s~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~fD~i~f 127 (229)
T d1zx0a1 52 SKGGRVLEVGFGMAIAASKVQEA--PIDEHWIIECNDGVFQRLRDWAPRQTHK--VIPLKGLWEDVAPTLPDGHFDGILY 127 (229)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTS--CEEEEEEEECCHHHHHHHHHHGGGCSSE--EEEEESCHHHHGGGSCTTCEEEEEE
T ss_pred cCCCeEEEeeccchHHHHHHHHc--CCCeEEEeCCCHHHHHHHHHHhhhcccc--cccccccccccccccccccccceee
Confidence 56889999999999999999875 2368999999999999999998876643 677888877654332 468999999
Q ss_pred cCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 413 DAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 413 D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
|+..+..... +. ..+..+++++.++|||||+|+|.+
T Consensus 128 D~~~~~~~~~-~~----------------~~~~~~~~~~~r~LkpGG~~~~~~ 163 (229)
T d1zx0a1 128 DTYPLSEETW-HT----------------HQFNFIKNHAFRLLKPGGVLTYCN 163 (229)
T ss_dssp CCCCCBGGGT-TT----------------HHHHHHHHTHHHHEEEEEEEEECC
T ss_pred cccccccccc-cc----------------cCHHHHHHHHHHHcCCCcEEEEEe
Confidence 9876543321 11 123456899999999999999854
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=99.26 E-value=8.3e-12 Score=114.58 Aligned_cols=81 Identities=19% Similarity=0.187 Sum_probs=68.8
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCc-cEEEEcCccccccccC--CCCCCEEE
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS-VIRTIHADLRTFADNS--TVKCDKVL 411 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~-~i~~~~~D~~~~~~~~--~~~fD~Vl 411 (528)
.|.+|||+|||+|..++.++.+ +..+|+.||.++..++.+++|++.+++.+ ...++..|+..+.... ..+||+|+
T Consensus 43 ~~~~vLDlFaGsG~~glEalSR--GA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIF 120 (183)
T d2ifta1 43 HQSECLDGFAGSGSLGFEALSR--QAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVF 120 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHT--TCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEE
T ss_pred ccceEeecccCccceeeeeeee--cceeeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEE
Confidence 4779999999999999999986 56799999999999999999999998864 4677888877654422 35799999
Q ss_pred EcCCCC
Q 009708 412 LDAPCS 417 (528)
Q Consensus 412 ~D~Pcs 417 (528)
+|||+.
T Consensus 121 lDPPY~ 126 (183)
T d2ifta1 121 LDPPFH 126 (183)
T ss_dssp ECCCSS
T ss_pred echhHh
Confidence 999994
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=9e-12 Score=117.52 Aligned_cols=142 Identities=17% Similarity=0.164 Sum_probs=107.8
Q ss_pred HHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc-
Q 009708 324 AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN- 402 (528)
Q Consensus 324 s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~- 402 (528)
.+++..++......+||++|||+|..|+++|..++.+|+|+++|+++...+.+++++++.|+.++++++.+|+.+..+.
T Consensus 48 g~lL~~L~~~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~ 127 (219)
T d2avda1 48 AQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDEL 127 (219)
T ss_dssp HHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhh
Confidence 4455555544456699999999999999999988878999999999999999999999999999999999999775432
Q ss_pred ----CCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCC-----ch--
Q 009708 403 ----STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSID-----PE-- 471 (528)
Q Consensus 403 ----~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~-----~~-- 471 (528)
...+||.|++|+.-+. |...++.+.++|+|||.|++...-+. +.
T Consensus 128 ~~~~~~~~fD~ifiD~dk~~-------------------------y~~~~~~~~~lL~~GGvii~Dn~l~~G~v~~~~~~ 182 (219)
T d2avda1 128 LAAGEAGTFDVAVVDADKEN-------------------------CSAYYERCLQLLRPGGILAVLRVLWRGKVLQPPKG 182 (219)
T ss_dssp HHTTCTTCEEEEEECSCSTT-------------------------HHHHHHHHHHHEEEEEEEEEECCSGGGGGGSCCTT
T ss_pred hhhcccCCccEEEEeCCHHH-------------------------HHHHHHHHHHHhcCCcEEEEeCCcccCcccCcccC
Confidence 1468999999976532 23457788899999999998765432 11
Q ss_pred -hhHHHHH---HHHhhCCCceEe
Q 009708 472 -ENEERVE---AFLLRHPEFSID 490 (528)
Q Consensus 472 -Ene~~v~---~~l~~~~~~~~~ 490 (528)
+....+. +++.++|+|...
T Consensus 183 d~~~~~ir~~~~~i~~d~r~~~~ 205 (219)
T d2avda1 183 DVAAECVRNLNERIRRDVRVYIS 205 (219)
T ss_dssp CHHHHHHHHHHHHHHHCTTEEEE
T ss_pred CHHHHHHHHHHHHHHhCCCEEEE
Confidence 1112233 445667776643
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.25 E-value=9.6e-12 Score=117.98 Aligned_cols=140 Identities=12% Similarity=0.061 Sum_probs=99.2
Q ss_pred HHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCC----------------CccE
Q 009708 326 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQV----------------NSVI 389 (528)
Q Consensus 326 l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~----------------~~~i 389 (528)
.+..++.+.+|.+|||+|||+|..+..+|+. +.+|+|||+|+.+++.++++....+. ...+
T Consensus 36 ~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~---G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 112 (229)
T d2bzga1 36 HLDTFLKGKSGLRVFFPLCGKAVEMKWFADR---GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNI 112 (229)
T ss_dssp HHHHHHTTCCSCEEEETTCTTCTHHHHHHHT---TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSE
T ss_pred HHHHhcCCCCCCEEEEeCCCCcHHHHHHHhC---CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcE
Confidence 3445667788999999999999999999985 56999999999999998887654221 1248
Q ss_pred EEEcCccccccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCC
Q 009708 390 RTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSID 469 (528)
Q Consensus 390 ~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~ 469 (528)
+++++|+..+.......||+|+. +. ++.. ..+.+. ...++.+.++|||||++++.+++..
T Consensus 113 ~~~~~d~~~l~~~~~~~fd~i~~---~~---~l~~-------~~~~~r-------~~~~~~~~~~LkpgG~~~l~~~~~~ 172 (229)
T d2bzga1 113 SLYCCSIFDLPRTNIGKFDMIWD---RG---ALVA-------INPGDR-------KCYADTMFSLLGKKFQYLLCVLSYD 172 (229)
T ss_dssp EEEESCGGGGGGSCCCCEEEEEE---SS---STTT-------SCGGGH-------HHHHHHHHHTEEEEEEEEEEEEECC
T ss_pred EEEEcchhhccccccCceeEEEE---EE---EEEe-------ccchhh-------HHHHHHHHhhcCCcceEEEEEcccC
Confidence 89999999887666678999975 21 1111 111222 2358889999999999998887754
Q ss_pred chh--------hHHHHHHHHhhCCCceEe
Q 009708 470 PEE--------NEERVEAFLLRHPEFSID 490 (528)
Q Consensus 470 ~~E--------ne~~v~~~l~~~~~~~~~ 490 (528)
+.+ .++.+..++. +.|++.
T Consensus 173 ~~~~~gpp~~~~~~el~~lf~--~~~~i~ 199 (229)
T d2bzga1 173 PTKHPGPPFYVPHAEIERLFG--KICNIR 199 (229)
T ss_dssp TTTCCCSSCCCCHHHHHHHHT--TTEEEE
T ss_pred CCCCCCCCCCCCHHHHHHHhc--CCCEEE
Confidence 322 2344556664 345543
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.25 E-value=5.4e-12 Score=123.68 Aligned_cols=114 Identities=21% Similarity=0.144 Sum_probs=89.7
Q ss_pred HHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCC
Q 009708 326 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 405 (528)
Q Consensus 326 l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~ 405 (528)
++-.+..+..+.+|||+|||+|..+..++...+.+++|+|+|+|+.+++.++++++..+.+ ++++++|+..+.. .+
T Consensus 18 l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~--~~f~~~d~~~~~~--~~ 93 (281)
T d2gh1a1 18 LVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYD--SEFLEGDATEIEL--ND 93 (281)
T ss_dssp HHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSE--EEEEESCTTTCCC--SS
T ss_pred HHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccccccc--ccccccccccccc--cC
Confidence 3334445667789999999999999999987766689999999999999999999988863 8899999987653 36
Q ss_pred CCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 406 ~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
+||+|++..- +.+-++ ...+|+++.+.|||||.++..+
T Consensus 94 ~fD~v~~~~~------l~~~~d----------------~~~~l~~~~~~LkpgG~lii~~ 131 (281)
T d2gh1a1 94 KYDIAICHAF------LLHMTT----------------PETMLQKMIHSVKKGGKIICFE 131 (281)
T ss_dssp CEEEEEEESC------GGGCSS----------------HHHHHHHHHHTEEEEEEEEEEE
T ss_pred CceEEEEehh------hhcCCC----------------HHHHHHHHHHHcCcCcEEEEEE
Confidence 7999997432 222111 1246999999999999998765
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.24 E-value=6e-12 Score=118.76 Aligned_cols=110 Identities=17% Similarity=0.168 Sum_probs=85.6
Q ss_pred CCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEE
Q 009708 332 DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVL 411 (528)
Q Consensus 332 ~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl 411 (528)
...++.+|||+|||+|..+..++.. ...+|+|+|+|+.+++.|++++...+..+ ++++++|+.++... .++||+|+
T Consensus 57 ~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~l~~ak~~~~~~~~~~-~~f~~~d~~~~~~~-~~~fD~I~ 132 (222)
T d2ex4a1 57 NKTGTSCALDCGAGIGRITKRLLLP--LFREVDMVDITEDFLVQAKTYLGEEGKRV-RNYFCCGLQDFTPE-PDSYDVIW 132 (222)
T ss_dssp -CCCCSEEEEETCTTTHHHHHTTTT--TCSEEEEEESCHHHHHHHHHHTGGGGGGE-EEEEECCGGGCCCC-SSCEEEEE
T ss_pred CCCCCCEEEEeccCCCHhhHHHHHh--cCCEEEEeecCHHHhhccccccccccccc-cccccccccccccc-cccccccc
Confidence 4566789999999999999888654 24589999999999999999998888765 79999999987643 57899999
Q ss_pred EcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 412 LDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 412 ~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
+. +++.+-|+ .+ ..++|+++.++|||||.+++++
T Consensus 133 ~~------~~l~h~~~-------~~-------~~~~l~~i~~~Lk~~G~~~i~~ 166 (222)
T d2ex4a1 133 IQ------WVIGHLTD-------QH-------LAEFLRRCKGSLRPNGIIVIKD 166 (222)
T ss_dssp EE------SCGGGSCH-------HH-------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred cc------cccccchh-------hh-------hhhHHHHHHHhcCCcceEEEEE
Confidence 63 22322221 22 2346999999999999998763
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=99.24 E-value=9e-12 Score=116.92 Aligned_cols=153 Identities=20% Similarity=0.219 Sum_probs=106.8
Q ss_pred chHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccc
Q 009708 322 ESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD 401 (528)
Q Consensus 322 ~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~ 401 (528)
.-+.+++.++.+.+|++|||.|||+|++...+.+.+.....++|+|+++..+.. .....++++|......
T Consensus 6 ~i~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~----------~~~~~~~~~~~~~~~~ 75 (223)
T d2ih2a1 6 EVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDL----------PPWAEGILADFLLWEP 75 (223)
T ss_dssp HHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCC----------CTTEEEEESCGGGCCC
T ss_pred HHHHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhh----------cccceeeeeehhcccc
Confidence 346788889999999999999999999999988887777889999999876532 2224677888876543
Q ss_pred cCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHH-------HHHHHHHHHHHHHhccCcCCCEEEEEc-CCCCchhh
Q 009708 402 NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDME-------ELKILQDELLDAASLLVKPGGVLVYST-CSIDPEEN 473 (528)
Q Consensus 402 ~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~-------~l~~~q~~lL~~a~~~LkpGG~LvysT-cs~~~~En 473 (528)
..+||.|+.|||+.........+............ ....++..++..++++|++||++++.+ +++...++
T Consensus 76 --~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~~~l~~~~ 153 (223)
T d2ih2a1 76 --GEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLED 153 (223)
T ss_dssp --SSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTCGG
T ss_pred --ccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEeeeeccCcc
Confidence 36899999999996655433322111100000000 112256678999999999999988776 55655566
Q ss_pred HHHHHHHHhhCCC
Q 009708 474 EERVEAFLLRHPE 486 (528)
Q Consensus 474 e~~v~~~l~~~~~ 486 (528)
...+.++|.++-.
T Consensus 154 ~~~lR~~l~~~~~ 166 (223)
T d2ih2a1 154 FALLREFLAREGK 166 (223)
T ss_dssp GHHHHHHHHHHSE
T ss_pred hHHHHHHHHhcCC
Confidence 6677777776533
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.24 E-value=2.8e-11 Score=116.46 Aligned_cols=146 Identities=11% Similarity=0.084 Sum_probs=97.8
Q ss_pred CCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccc-----cCCCCCCEE
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-----NSTVKCDKV 410 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~-----~~~~~fD~V 410 (528)
.-+|||+|||+|..++.++...+ ..+++|+|+|+.+++.|++|++++++.+++.+++.+...... ...++||.|
T Consensus 62 ~~~~LDiGtGsg~I~~~l~~~~~-~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i 140 (250)
T d2h00a1 62 LRRGIDIGTGASCIYPLLGATLN-GWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 140 (250)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred cceEEEeCCCchHHHHHHHHhCC-CccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeEE
Confidence 45899999999999999999865 579999999999999999999999999999988766543221 123579999
Q ss_pred EEcCCCCCCccccCC-chhhccCC-HH--------H-HHH--HHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHH
Q 009708 411 LLDAPCSGLGVLSKR-ADLRWNRR-LE--------D-MEE--LKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERV 477 (528)
Q Consensus 411 l~D~Pcsg~G~~~~~-pd~~~~~~-~~--------~-~~~--l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v 477 (528)
++|||+..+.-.... .+.+.... +. . ..+ -.....++++++..+++..|.+. |-+...++-..+
T Consensus 141 vsNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~~F~~~ii~es~~~~~~~g~~t---~~ig~~~~l~~i 217 (250)
T d2h00a1 141 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYS---CMLGKKCSLAPL 217 (250)
T ss_dssp EECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEE---EEESSTTSHHHH
T ss_pred EecCcccccchhhhccccccccccCchhhcCccccccccccchhhHHHHHHHHHHHHhhcCcEEE---EEecchhhHHHH
Confidence 999999643321110 00000000 00 0 000 02356788999999999999775 233444555556
Q ss_pred HHHHhhCC
Q 009708 478 EAFLLRHP 485 (528)
Q Consensus 478 ~~~l~~~~ 485 (528)
...|.+..
T Consensus 218 ~~~L~~~g 225 (250)
T d2h00a1 218 KEELRIQG 225 (250)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHcC
Confidence 77777653
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.21 E-value=7.2e-12 Score=118.56 Aligned_cols=120 Identities=13% Similarity=0.167 Sum_probs=89.5
Q ss_pred cceeEeecchHHHHHHhc--CCCCCCeEEEeCCccchHHHHHHHHcCC-----CcEEEEEcCChHHHHHHHHHHHHc---
Q 009708 314 EGLCAVQDESAGLVVAVV--DPQPGQSIVDCCAAPGGKTLYMASCLSG-----QGLVYAIDINKGRLRILNETAKLH--- 383 (528)
Q Consensus 314 ~G~~~~Qd~~s~l~~~~l--~~~~g~~VLDl~aG~G~kt~~la~~~~~-----~~~v~avD~s~~~l~~~~~n~~~~--- 383 (528)
.|....|......+.++| ++++|++|||+|||+|..|..++..++. ..+|+++|++++.++.+++|+...
T Consensus 57 ~~~~is~P~~~a~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~ 136 (223)
T d1r18a_ 57 GGVTISAPHMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRS 136 (223)
T ss_dssp TTEEECCHHHHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred CCceeehhhhHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchh
Confidence 455554433334455555 6889999999999999999999988643 348999999999999999987654
Q ss_pred --CCCccEEEEcCccccccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEE
Q 009708 384 --QVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVL 461 (528)
Q Consensus 384 --g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~L 461 (528)
++.+ +.++++|+....+. ..+||+|++++.+. .-| ....+.|||||+|
T Consensus 137 ~~~~~n-v~~~~~d~~~~~~~-~~~fD~Iiv~~a~~------~~p----------------------~~l~~~Lk~gG~l 186 (223)
T d1r18a_ 137 MLDSGQ-LLIVEGDGRKGYPP-NAPYNAIHVGAAAP------DTP----------------------TELINQLASGGRL 186 (223)
T ss_dssp HHHHTS-EEEEESCGGGCCGG-GCSEEEEEECSCBS------SCC----------------------HHHHHTEEEEEEE
T ss_pred hcCccE-EEEEeccccccccc-ccceeeEEEEeech------hch----------------------HHHHHhcCCCcEE
Confidence 3444 89999999875443 36899999976652 112 2235789999999
Q ss_pred EE
Q 009708 462 VY 463 (528)
Q Consensus 462 vy 463 (528)
|.
T Consensus 187 V~ 188 (223)
T d1r18a_ 187 IV 188 (223)
T ss_dssp EE
T ss_pred EE
Confidence 94
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.20 E-value=3.3e-11 Score=116.02 Aligned_cols=125 Identities=17% Similarity=0.155 Sum_probs=96.8
Q ss_pred ecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccc
Q 009708 320 QDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 399 (528)
Q Consensus 320 Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~ 399 (528)
++.....+...++..+..+|||+|||+|..+..+++.. +..+++++|+ +.+++.+++++...|+.++++++.+|+++.
T Consensus 65 ~~~~~~~~~~~~d~~~~~~VLDvGcG~G~~~~~la~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~ 142 (253)
T d1tw3a2 65 QDVAFDAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRA-PHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEP 142 (253)
T ss_dssp TTTTTHHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSC
T ss_pred HHHHHHHHHhhcCCccCCEEEEeCCCCCHHHHHHHHhc-ceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhh
Confidence 44455566677777778899999999999999999984 5689999998 678999999999999988899999998763
Q ss_pred cccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCC
Q 009708 400 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSID 469 (528)
Q Consensus 400 ~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~ 469 (528)
. +.+||+|++- .++.. ++.++. .++|+++.+.|||||+|++......
T Consensus 143 ~---~~~~D~v~~~------~vlh~-------~~d~~~-------~~~L~~~~~~LkPGG~l~i~e~~~~ 189 (253)
T d1tw3a2 143 L---PRKADAIILS------FVLLN-------WPDHDA-------VRILTRCAEALEPGGRILIHERDDL 189 (253)
T ss_dssp C---SSCEEEEEEE------SCGGG-------SCHHHH-------HHHHHHHHHTEEEEEEEEEEECCBC
T ss_pred c---ccchhheeec------ccccc-------CCchhh-------HHHHHHHHHhcCCCcEEEEEeccCC
Confidence 3 3579999862 12221 222332 3469999999999999998766543
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=99.20 E-value=4.6e-12 Score=126.82 Aligned_cols=160 Identities=15% Similarity=0.130 Sum_probs=108.4
Q ss_pred ceeEeecchHHHHH----HhcCCCCCCeEEEeCCccchHHHHHHHHcCC----CcEEEEEcCChHHHHHHHHHHHHcCCC
Q 009708 315 GLCAVQDESAGLVV----AVVDPQPGQSIVDCCAAPGGKTLYMASCLSG----QGLVYAIDINKGRLRILNETAKLHQVN 386 (528)
Q Consensus 315 G~~~~Qd~~s~l~~----~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~----~~~v~avD~s~~~l~~~~~n~~~~g~~ 386 (528)
|.++..+.-+.+++ .++.++++.+|||.|||+|++.+.+...+.. ..+++|+|+++.++..++.|+...+..
T Consensus 93 g~~~TP~~i~~~m~~l~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~ 172 (328)
T d2f8la1 93 NHQMTPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQK 172 (328)
T ss_dssp GGCCCCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCC
T ss_pred CeEECcHHHHHHHHHHHHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhh
Confidence 33444444444443 4456778889999999999999998876532 347999999999999999999998876
Q ss_pred ccEEEEcCccccccccCCCCCCEEEEcCCCCCCccccCCc--hhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEE-
Q 009708 387 SVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRA--DLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY- 463 (528)
Q Consensus 387 ~~i~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~p--d~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvy- 463 (528)
. .+.++|...... ..+||+|++|||++......+.. +........ ..+.-++..++++|+|||++++
T Consensus 173 ~--~~~~~d~~~~~~--~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~------~~~~~Fi~~~~~~Lk~~G~~~~I 242 (328)
T d2f8la1 173 M--TLLHQDGLANLL--VDPVDVVISDLPVGYYPDDENAKTFELCREEGHS------FAHFLFIEQGMRYTKPGGYLFFL 242 (328)
T ss_dssp C--EEEESCTTSCCC--CCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCE------EHHHHHHHHHHHTEEEEEEEEEE
T ss_pred h--hhhccccccccc--cccccccccCCCCCCCccchhhhhcchhcccCcc------hHHHHHHHHHHHhcCCCCceEEE
Confidence 4 566777655332 36899999999995432211100 000111111 1234589999999999998764
Q ss_pred EcCCCCchhhHHHHHHHHhhC
Q 009708 464 STCSIDPEENEERVEAFLLRH 484 (528)
Q Consensus 464 sTcs~~~~Ene~~v~~~l~~~ 484 (528)
..+++........+..+|.++
T Consensus 243 ~p~~~l~~~~~~~lR~~L~~~ 263 (328)
T d2f8la1 243 VPDAMFGTSDFAKVDKFIKKN 263 (328)
T ss_dssp EEGGGGGSTTHHHHHHHHHHH
T ss_pred ecCccccCchhHHHHHHHHhC
Confidence 456666666666777777665
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.20 E-value=5.4e-11 Score=112.63 Aligned_cols=119 Identities=19% Similarity=0.174 Sum_probs=97.0
Q ss_pred HHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc-
Q 009708 324 AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN- 402 (528)
Q Consensus 324 s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~- 402 (528)
.+++..++......+||++|++.|.-|+.+|+.++..|+|+++|.++...+.+++++++.|+.++|+++++|+.+..+.
T Consensus 48 g~~L~~L~~~~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l 127 (227)
T d1susa1 48 GQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEM 127 (227)
T ss_dssp HHHHHHHHHHHTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHH
Confidence 3444444444445699999999999999999998878999999999999999999999999999999999999876442
Q ss_pred -----CCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 403 -----STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 403 -----~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
..++||.|++|+--.. +...++.+..+|+|||.||+-..-
T Consensus 128 ~~~~~~~~~fD~iFiDa~k~~-------------------------y~~~~e~~~~ll~~gGiii~DNvl 172 (227)
T d1susa1 128 IKDEKNHGSYDFIFVDADKDN-------------------------YLNYHKRLIDLVKVGGVIGYDNTL 172 (227)
T ss_dssp HHCGGGTTCBSEEEECSCSTT-------------------------HHHHHHHHHHHBCTTCCEEEETTT
T ss_pred HhccccCCceeEEEeccchhh-------------------------hHHHHHHHHhhcCCCcEEEEccCC
Confidence 1468999999975421 234577888999999999987654
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.19 E-value=2.6e-11 Score=112.17 Aligned_cols=77 Identities=18% Similarity=0.215 Sum_probs=63.1
Q ss_pred HHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCC
Q 009708 328 VAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC 407 (528)
Q Consensus 328 ~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~f 407 (528)
+...+--.|.+|||+|||+|..++.++.+ +..+|+++|+++.+++.+++|+. + ++++++|+.++. ++|
T Consensus 41 ~~~~~dl~Gk~VLDlGcGtG~l~i~a~~~--ga~~V~~vDid~~a~~~ar~N~~-----~-~~~~~~D~~~l~----~~f 108 (197)
T d1ne2a_ 41 IYNDGNIGGRSVIDAGTGNGILACGSYLL--GAESVTAFDIDPDAIETAKRNCG-----G-VNFMVADVSEIS----GKY 108 (197)
T ss_dssp HHHHTSSBTSEEEEETCTTCHHHHHHHHT--TBSEEEEEESCHHHHHHHHHHCT-----T-SEEEECCGGGCC----CCE
T ss_pred HHHcCCCCCCEEEEeCCCCcHHHHHHHHc--CCCcccccccCHHHHHHHHHccc-----c-ccEEEEehhhcC----Ccc
Confidence 33444446899999999999999877764 34689999999999999999853 2 678999997754 679
Q ss_pred CEEEEcCCC
Q 009708 408 DKVLLDAPC 416 (528)
Q Consensus 408 D~Vl~D~Pc 416 (528)
|.|++|||+
T Consensus 109 D~Vi~NPPf 117 (197)
T d1ne2a_ 109 DTWIMNPPF 117 (197)
T ss_dssp EEEEECCCC
T ss_pred eEEEeCccc
Confidence 999999998
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.18 E-value=2.2e-11 Score=114.52 Aligned_cols=142 Identities=17% Similarity=0.186 Sum_probs=103.7
Q ss_pred HHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC
Q 009708 324 AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS 403 (528)
Q Consensus 324 s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~ 403 (528)
.+++..++......+|||+|||.|..|+.+|+.++.+++|+++|+++..++.++++++..|+.++|+++.+|+.+..+..
T Consensus 45 G~lL~~lv~~~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l 124 (214)
T d2cl5a1 45 GQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQL 124 (214)
T ss_dssp HHHHHHHHHHHCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGH
T ss_pred HHHHHHHHHhhCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccch
Confidence 33444444333446999999999999999999887789999999999999999999999999989999999998764321
Q ss_pred -----CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHH
Q 009708 404 -----TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVE 478 (528)
Q Consensus 404 -----~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~ 478 (528)
...||.|++|..... .. ....+..++++|||||+||+-.. +.+... + ..
T Consensus 125 ~~~~~~~~~D~ifiD~~~~~------------------~~-----~~~~l~~~~~lLkpGGvIv~Ddv-l~~g~~-~-~~ 178 (214)
T d2cl5a1 125 KKKYDVDTLDMVFLDHWKDR------------------YL-----PDTLLLEKCGLLRKGTVLLADNV-IVPGTP-D-FL 178 (214)
T ss_dssp HHHSCCCCEEEEEECSCGGG------------------HH-----HHHHHHHHTTCEEEEEEEEESCC-CCCCCH-H-HH
T ss_pred hhcccccccceeeecccccc------------------cc-----cHHHHHHHhCccCCCcEEEEeCc-CCCCCh-H-HH
Confidence 357999999944311 00 01136778899999998886543 333322 2 33
Q ss_pred HHHhhCCCceEec
Q 009708 479 AFLLRHPEFSIDP 491 (528)
Q Consensus 479 ~~l~~~~~~~~~~ 491 (528)
.+++..+.|....
T Consensus 179 ~~vr~~~~~~~~~ 191 (214)
T d2cl5a1 179 AYVRGSSSFECTH 191 (214)
T ss_dssp HHHHHCTTEEEEE
T ss_pred HHHhccCceeehh
Confidence 5667777776543
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.14 E-value=5e-11 Score=117.10 Aligned_cols=125 Identities=14% Similarity=0.164 Sum_probs=86.6
Q ss_pred HHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCc---cEEEEcCccccccc
Q 009708 325 GLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS---VIRTIHADLRTFAD 401 (528)
Q Consensus 325 ~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~---~i~~~~~D~~~~~~ 401 (528)
.++...+...++.+|||+|||+|..+..+++. +.+|+|+|+|+.+++.|+++....+... ...+...|+..+..
T Consensus 46 ~~l~~~l~~~~~~~vLD~GcG~G~~~~~la~~---g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (292)
T d1xvaa_ 46 AWLLGLLRQHGCHRVLDVACGTGVDSIMLVEE---GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDK 122 (292)
T ss_dssp HHHHHHHHHTTCCEEEESSCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHH
T ss_pred HHHHHHhhhcCCCEEEEecCCCcHHHHHHHHc---CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeecccccccc
Confidence 45556666677889999999999999999985 3589999999999999999998877542 13344555544322
Q ss_pred c--CCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcC
Q 009708 402 N--STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466 (528)
Q Consensus 402 ~--~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTc 466 (528)
. ....||.|++--. ++..-|+..+ +.++ +..+|+++.++|||||+|++.+.
T Consensus 123 ~~~~~~~fd~v~~~~~-----~~~~~~~~~~--~~~~-------~~~~l~~~~~~LkpgG~li~~~~ 175 (292)
T d1xvaa_ 123 DVPAGDGFDAVICLGN-----SFAHLPDSKG--DQSE-------HRLALKNIASMVRPGGLLVIDHR 175 (292)
T ss_dssp HSCCTTCEEEEEECSS-----CGGGSCCTTS--SSHH-------HHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccCCCCCceEEEEecC-----chhhcCCccc--ChHH-------HHHHHHHHHHHcCcCcEEEEeec
Confidence 1 2467999996211 2222222111 1122 34569999999999999998653
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.12 E-value=3.8e-11 Score=113.79 Aligned_cols=100 Identities=19% Similarity=0.247 Sum_probs=74.7
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEc
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLD 413 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D 413 (528)
.++.+|||+|||+|..+..+++. +.+|+|+|+|+.+++.++++ +... ++.+|+.+++. ..++||+|++-
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~l~~a~~~----~~~~---~~~~~~~~l~~-~~~~fD~ii~~ 109 (246)
T d2avna1 41 KNPCRVLDLGGGTGKWSLFLQER---GFEVVLVDPSKEMLEVAREK----GVKN---VVEAKAEDLPF-PSGAFEAVLAL 109 (246)
T ss_dssp CSCCEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHH----TCSC---EEECCTTSCCS-CTTCEEEEEEC
T ss_pred CCCCEEEEECCCCchhccccccc---ceEEEEeecccccccccccc----cccc---ccccccccccc-ccccccceeee
Confidence 35779999999999999999874 46999999999999998875 3332 46788887653 34789999862
Q ss_pred CCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 414 APCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 414 ~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
. +++.+-|| ..++|+++.++|||||.++.++
T Consensus 110 ~-----~~~~~~~d----------------~~~~l~~i~r~Lk~gG~~ii~~ 140 (246)
T d2avna1 110 G-----DVLSYVEN----------------KDKAFSEIRRVLVPDGLLIATV 140 (246)
T ss_dssp S-----SHHHHCSC----------------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred c-----chhhhhhh----------------HHHHHHHHHhhcCcCcEEEEEE
Confidence 1 11211111 2346899999999999999765
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=99.09 E-value=1.3e-10 Score=106.21 Aligned_cols=139 Identities=19% Similarity=0.280 Sum_probs=102.5
Q ss_pred HHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc----
Q 009708 327 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---- 402 (528)
Q Consensus 327 ~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---- 402 (528)
+..++.+++|+.++|+++|.||.+..+.+. .++|+|+|.++.+++.++.. - ..++.+++.++.++...
T Consensus 10 vl~~l~~~~g~~~vD~T~G~GGhs~~iL~~---~~~viaiD~D~~ai~~a~~~----~-~~~~~~~~~~f~~~~~~l~~~ 81 (182)
T d1wg8a2 10 ALDLLAVRPGGVYVDATLGGAGHARGILER---GGRVIGLDQDPEAVARAKGL----H-LPGLTVVQGNFRHLKRHLAAL 81 (182)
T ss_dssp HHHHHTCCTTCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHT----C-CTTEEEEESCGGGHHHHHHHT
T ss_pred HHHhcCCCCCCEEEEeCCCCcHHHHHHhcc---cCcEEEEhhhhhHHHHHhhc----c-ccceeEeehHHHHHHHHHHHc
Confidence 346678999999999999999999988874 68999999999999887653 2 33589999988776432
Q ss_pred CCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHHHh
Q 009708 403 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLL 482 (528)
Q Consensus 403 ~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~l~ 482 (528)
..+.+|.|+.|.-+|+... ++..+....+...|+.++.+|++||++++.++ +..|+ ..|..|++
T Consensus 82 ~~~~vdgIl~DLGvSs~ql-------------d~~~re~~~~~~~L~~~~~~lk~gg~~~ii~f--hs~Ed-~ivk~~~~ 145 (182)
T d1wg8a2 82 GVERVDGILADLGVSSFHL-------------DDPSDELNALKEFLEQAAEVLAPGGRLVVIAF--HSLED-RVVKRFLR 145 (182)
T ss_dssp TCSCEEEEEEECSCCHHHH-------------HCGGTHHHHHHHHHHHHHHHEEEEEEEEEEEC--SHHHH-HHHHHHHH
T ss_pred CCCccCEEEEEccCCHHHh-------------hcchHHHHHHHHHHHHHHhhhCCCCeEEEEec--ccchh-HHHHHHHh
Confidence 1367999999988776544 11112223455689999999999999998764 44443 46677777
Q ss_pred hCCCceEe
Q 009708 483 RHPEFSID 490 (528)
Q Consensus 483 ~~~~~~~~ 490 (528)
+. .++..
T Consensus 146 e~-~~k~i 152 (182)
T d1wg8a2 146 ES-GLKVL 152 (182)
T ss_dssp HH-CSEES
T ss_pred hc-cceec
Confidence 54 35544
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.08 E-value=1.9e-10 Score=110.82 Aligned_cols=114 Identities=15% Similarity=0.117 Sum_probs=84.9
Q ss_pred HHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCC
Q 009708 326 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 405 (528)
Q Consensus 326 l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~ 405 (528)
.....+...++.+|||+|||+|..|..++... ...|+++|+++.+++.|++++.. .+ .++++++|+.++... .+
T Consensus 84 ~fl~~l~~~~~~~vLD~GcG~G~~t~~ll~~~--~~~v~~vD~s~~~l~~a~~~~~~--~~-~~~~~~~d~~~~~~~-~~ 157 (254)
T d1xtpa_ 84 NFIASLPGHGTSRALDCGAGIGRITKNLLTKL--YATTDLLEPVKHMLEEAKRELAG--MP-VGKFILASMETATLP-PN 157 (254)
T ss_dssp HHHHTSTTCCCSEEEEETCTTTHHHHHTHHHH--CSEEEEEESCHHHHHHHHHHTTT--SS-EEEEEESCGGGCCCC-SS
T ss_pred HHHhhCCCCCCCeEEEecccCChhhHHHHhhc--CceEEEEcCCHHHHHhhhccccc--cc-cceeEEccccccccC-CC
Confidence 33445556677899999999999999988653 35899999999999999987653 23 478999999887643 47
Q ss_pred CCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 406 ~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
+||+|++--. +.+- +..++ .++|+++.+.|||||+|++..
T Consensus 158 ~fD~I~~~~v------l~hl-------~d~d~-------~~~l~~~~~~LkpgG~iii~e 197 (254)
T d1xtpa_ 158 TYDLIVIQWT------AIYL-------TDADF-------VKFFKHCQQALTPNGYIFFKE 197 (254)
T ss_dssp CEEEEEEESC------GGGS-------CHHHH-------HHHHHHHHHHEEEEEEEEEEE
T ss_pred ccceEEeecc------cccc-------chhhh-------HHHHHHHHHhcCCCcEEEEEe
Confidence 8999997432 2221 22222 346999999999999999754
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.06 E-value=1.2e-10 Score=115.60 Aligned_cols=115 Identities=16% Similarity=0.172 Sum_probs=84.6
Q ss_pred hcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCE
Q 009708 330 VVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDK 409 (528)
Q Consensus 330 ~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~ 409 (528)
.....+|.+|||+|||+|..++.+|+. +..+|+|+|.++.+. .++++.+.++..++++++++|+.++... ..+||+
T Consensus 30 ~~~~~~~~~VLDiGcG~G~lsl~aa~~--Ga~~V~aid~s~~~~-~a~~~~~~~~~~~~i~~~~~~~~~l~~~-~~~~D~ 105 (311)
T d2fyta1 30 NPHIFKDKVVLDVGCGTGILSMFAAKA--GAKKVLGVDQSEILY-QAMDIIRLNKLEDTITLIKGKIEEVHLP-VEKVDV 105 (311)
T ss_dssp CGGGTTTCEEEEETCTTSHHHHHHHHT--TCSEEEEEESSTHHH-HHHHHHHHTTCTTTEEEEESCTTTSCCS-CSCEEE
T ss_pred ccccCCcCEEEEECCCCCHHHHHHHHc--CCCEEEEEeCHHHHH-HHHHHHHHhCCCccceEEEeeHHHhcCc-cccceE
Confidence 334557889999999999999998875 346999999999876 4666777788877899999999887543 468999
Q ss_pred EEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 410 VLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 410 Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
|+++..-+.... . .. ...++....++|||||+++-+.++
T Consensus 106 Ivse~~~~~~~~--e----------~~-------~~~~~~a~~~~Lkp~G~iip~~~~ 144 (311)
T d2fyta1 106 IISEWMGYFLLF--E----------SM-------LDSVLYAKNKYLAKGGSVYPDICT 144 (311)
T ss_dssp EEECCCBTTBTT--T----------CH-------HHHHHHHHHHHEEEEEEEESCEEE
T ss_pred EEEeeeeeeccc--c----------cc-------cHHHHHHHHhcCCCCcEEeccccc
Confidence 998755432111 0 11 123466667899999999844433
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.05 E-value=1.6e-10 Score=112.10 Aligned_cols=96 Identities=20% Similarity=0.285 Sum_probs=75.8
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEE
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 412 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~ 412 (528)
+.++.+|||+|||+|..+..+++.. ++.+++|+|+|+.+++.++++. ++ ++++++|+.+++. ..++||.|++
T Consensus 82 ~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~~giD~s~~~~~~a~~~~-----~~-~~~~~~d~~~l~~-~~~sfD~v~~ 153 (268)
T d1p91a_ 82 DDKATAVLDIGCGEGYYTHAFADAL-PEITTFGLDVSKVAIKAAAKRY-----PQ-VTFCVASSHRLPF-SDTSMDAIIR 153 (268)
T ss_dssp CTTCCEEEEETCTTSTTHHHHHHTC-TTSEEEEEESCHHHHHHHHHHC-----TT-SEEEECCTTSCSB-CTTCEEEEEE
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHHC-CCCEEEEecchHhhhhhhhccc-----cc-ccceeeehhhccC-CCCCEEEEee
Confidence 4567799999999999999999874 4579999999999999887642 33 7899999988764 3578999985
Q ss_pred c-CCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcC
Q 009708 413 D-APCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466 (528)
Q Consensus 413 D-~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTc 466 (528)
. .|. . ++++.++|||||+|+++|-
T Consensus 154 ~~~~~-------------------~-----------~~e~~rvLkpgG~l~~~~p 178 (268)
T d1p91a_ 154 IYAPC-------------------K-----------AEELARVVKPGGWVITATP 178 (268)
T ss_dssp ESCCC-------------------C-----------HHHHHHHEEEEEEEEEEEE
T ss_pred cCCHH-------------------H-----------HHHHHHHhCCCcEEEEEee
Confidence 3 222 0 4556788999999998764
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.04 E-value=7.1e-10 Score=106.80 Aligned_cols=120 Identities=18% Similarity=0.130 Sum_probs=92.5
Q ss_pred hHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc
Q 009708 323 SAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 402 (528)
Q Consensus 323 ~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~ 402 (528)
....+...++..+..+|||+|||+|..+..+++.. +..+++++|+ +..++.++++++..|+.+++.++.+|.....
T Consensus 69 ~~~~~~~~~d~~~~~~vlDvG~G~G~~~~~l~~~~-P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~-- 144 (256)
T d1qzza2 69 AYEAPADAYDWSAVRHVLDVGGGNGGMLAAIALRA-PHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPL-- 144 (256)
T ss_dssp TTHHHHHTSCCTTCCEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCC--
T ss_pred HHHHHHhcCCCccCCEEEEECCCCCHHHHHHHHhh-cCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeeccccc--
Confidence 34445556666777899999999999999999984 5689999997 7899999999999999888999999987632
Q ss_pred CCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 403 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 403 ~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
+..||+|++-- ++. .++.++. .++|+++.+.|||||+|++....
T Consensus 145 -p~~~D~v~~~~------vLh-------~~~d~~~-------~~lL~~i~~~LkpgG~llI~d~~ 188 (256)
T d1qzza2 145 -PVTADVVLLSF------VLL-------NWSDEDA-------LTILRGCVRALEPGGRLLVLDRA 188 (256)
T ss_dssp -SCCEEEEEEES------CGG-------GSCHHHH-------HHHHHHHHHHEEEEEEEEEEECC
T ss_pred -cccchhhhccc------ccc-------ccCcHHH-------HHHHHHHHhhcCCcceeEEEEec
Confidence 24699998621 122 1222332 34699999999999999877643
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.03 E-value=9.9e-11 Score=116.43 Aligned_cols=108 Identities=14% Similarity=0.186 Sum_probs=83.5
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEc
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLD 413 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D 413 (528)
.+|.+|||+|||+|..++.+|+. +..+|+|+|.++. ...++++++.+|+.++|+++++|+.++... .++||+|+++
T Consensus 32 ~~~~~VLDiGcG~G~ls~~aa~~--Ga~~V~avd~s~~-~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~-~~~~D~ivs~ 107 (316)
T d1oria_ 32 FKDKVVLDVGSGTGILCMFAAKA--GARKVIGIECSSI-SDYAVKIVKANKLDHVVTIIKGKVEEVELP-VEKVDIIISE 107 (316)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHT--TCSEEEEEECSTT-HHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SSCEEEEEEC
T ss_pred CCcCEEEEEecCCcHHHHHHHHh--CCCEEEEEcCcHH-HhhhhhHHHHhCCccccceEeccHHHcccc-cceeEEEeee
Confidence 46889999999999999988875 3468999999976 577788899999998899999999887532 4689999987
Q ss_pred CCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 414 APCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 414 ~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
...+. ... ...+ ..++....++|||||.++-+
T Consensus 108 ~~~~~--l~~----------e~~~-------~~~l~~~~r~Lkp~G~iiP~ 139 (316)
T d1oria_ 108 WMGYC--LFY----------ESML-------NTVLHARDKWLAPDGLIFPD 139 (316)
T ss_dssp CCBBT--BTB----------TCCH-------HHHHHHHHHHEEEEEEEESC
T ss_pred eeeee--ecc----------HHHH-------HHHHHHHHhcCCCCeEEEee
Confidence 55432 111 0112 23578888999999998733
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.03 E-value=2.6e-10 Score=107.53 Aligned_cols=100 Identities=16% Similarity=0.153 Sum_probs=75.9
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEc
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLD 413 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D 413 (528)
..+.+|||+|||+|..+..+++. ..+|+|+|+|+.+++.++++.. +.++++++|+.++.. .++||+|++
T Consensus 19 ~~~~~VLDiGcG~G~~~~~l~~~---g~~v~giD~s~~~i~~a~~~~~-----~~~~~~~~~~~~~~~--~~~fD~I~~- 87 (225)
T d2p7ia1 19 FRPGNLLELGSFKGDFTSRLQEH---FNDITCVEASEEAISHAQGRLK-----DGITYIHSRFEDAQL--PRRYDNIVL- 87 (225)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTT---CSCEEEEESCHHHHHHHHHHSC-----SCEEEEESCGGGCCC--SSCEEEEEE-
T ss_pred CCCCcEEEEeCCCcHHHHHHHHc---CCeEEEEeCcHHHhhhhhcccc-----ccccccccccccccc--ccccccccc-
Confidence 44668999999999999988864 4579999999999999987632 248899999887653 478999986
Q ss_pred CCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHh-ccCcCCCEEEEEc
Q 009708 414 APCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAAS-LLVKPGGVLVYST 465 (528)
Q Consensus 414 ~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~-~~LkpGG~LvysT 465 (528)
.+++.+-+| ...+|..+. ++|||||.+++++
T Consensus 88 -----~~vleh~~d----------------~~~~l~~i~~~~Lk~gG~l~i~~ 119 (225)
T d2p7ia1 88 -----THVLEHIDD----------------PVALLKRINDDWLAEGGRLFLVC 119 (225)
T ss_dssp -----ESCGGGCSS----------------HHHHHHHHHHTTEEEEEEEEEEE
T ss_pred -----cceeEecCC----------------HHHHHHHHHHHhcCCCceEEEEe
Confidence 234433222 133477776 7899999999765
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.03 E-value=9.1e-11 Score=117.28 Aligned_cols=110 Identities=17% Similarity=0.185 Sum_probs=83.7
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEE
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 412 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~ 412 (528)
..+|.+|||+|||+|..++.+|+. +..+|+|+|.++ ++..++++.+.+|..++++++++|+.++... .++||+|++
T Consensus 36 ~~~~~~VLDlGcGtG~ls~~aa~~--Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~-~~~~D~i~s 111 (328)
T d1g6q1_ 36 LFKDKIVLDVGCGTGILSMFAAKH--GAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHLP-FPKVDIIIS 111 (328)
T ss_dssp HHTTCEEEEETCTTSHHHHHHHHT--CCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCS-SSCEEEEEE
T ss_pred cCCcCEEEEeCCCCCHHHHHHHHh--CCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhccCc-ccceeEEEE
Confidence 346899999999999999988875 356999999996 6789999999999988899999999887532 468999998
Q ss_pred cCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 413 DAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 413 D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
+........ ...+ ..++....++|||||+++-+.
T Consensus 112 e~~~~~~~~------------e~~~-------~~~~~a~~r~LkpgG~iiP~~ 145 (328)
T d1g6q1_ 112 EWMGYFLLY------------ESMM-------DTVLYARDHYLVEGGLIFPDK 145 (328)
T ss_dssp CCCBTTBST------------TCCH-------HHHHHHHHHHEEEEEEEESCE
T ss_pred Eecceeecc------------chhH-------HHHHHHHHhccCCCeEEEeee
Confidence 754422110 0111 234667778999999997333
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.02 E-value=7.8e-10 Score=110.41 Aligned_cols=114 Identities=11% Similarity=0.086 Sum_probs=84.3
Q ss_pred HHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHc-------CCC-ccEEEEcCccc
Q 009708 326 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLH-------QVN-SVIRTIHADLR 397 (528)
Q Consensus 326 l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~-------g~~-~~i~~~~~D~~ 397 (528)
-+...++++++++|||+|||+|..++++|... +..+++|||+++.+++.++++.+.. |+. ..++++++|+.
T Consensus 142 ~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~-~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~ 220 (328)
T d1nw3a_ 142 QMIDEIKMTDDDLFVDLGSGVGQVVLQVAAAT-NCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFL 220 (328)
T ss_dssp HHHHHSCCCTTCEEEEETCTTSHHHHHHHHHC-CCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTT
T ss_pred HHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECccc
Confidence 34566789999999999999999999999874 4568999999999999998876653 332 34899999998
Q ss_pred cccccC-CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEE
Q 009708 398 TFADNS-TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463 (528)
Q Consensus 398 ~~~~~~-~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvy 463 (528)
+.+... ....|+|+++--+. . .++. ..|.+..+.|||||++|.
T Consensus 221 ~~~~~~~~~~advi~~~~~~f-------~---------~~~~-------~~l~e~~r~LKpGg~iv~ 264 (328)
T d1nw3a_ 221 SEEWRERIANTSVIFVNNFAF-------G---------PEVD-------HQLKERFANMKEGGRIVS 264 (328)
T ss_dssp SHHHHHHHHHCSEEEECCTTT-------C---------HHHH-------HHHHHHHTTCCTTCEEEE
T ss_pred ccccccccCcceEEEEcceec-------c---------hHHH-------HHHHHHHHhCCCCcEEEE
Confidence 764321 11357888753331 1 1222 237888899999999984
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=99.01 E-value=2.9e-10 Score=117.62 Aligned_cols=162 Identities=17% Similarity=0.170 Sum_probs=113.9
Q ss_pred cceeEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCC------------cEEEEEcCChHHHHHHHHHHH
Q 009708 314 EGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQ------------GLVYAIDINKGRLRILNETAK 381 (528)
Q Consensus 314 ~G~~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~------------~~v~avD~s~~~l~~~~~n~~ 381 (528)
.|.|+....-+.+++.++.+.++.+|+|.|||+|++.+.+.+++... ..++|+|+++.....++.|+.
T Consensus 141 ~G~f~TP~~Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~ 220 (425)
T d2okca1 141 AGQYFTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLY 220 (425)
T ss_dssp CGGGCCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHH
T ss_pred chhhccchhhhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhh
Confidence 47888888888999999999999999999999999999988876432 249999999999999999999
Q ss_pred HcCCCc-cEEEEcCccccccccCCCCCCEEEEcCCCCCCccccCCch-hhccCCHHHHHHHHHHHHHHHHHHhccCcCCC
Q 009708 382 LHQVNS-VIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRAD-LRWNRRLEDMEELKILQDELLDAASLLVKPGG 459 (528)
Q Consensus 382 ~~g~~~-~i~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd-~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG 459 (528)
.+|... ...+.+.|...... ..+||+|+.|||++....-..... ..+..... ..+..++.++..+|++||
T Consensus 221 l~g~~~~~~~i~~~d~l~~~~--~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~------~~~~~Fi~~~~~~Lk~~G 292 (425)
T d2okca1 221 LHGIGTDRSPIVCEDSLEKEP--STLVDVILANPPFGTRPAGSVDINRPDFYVETK------NNQLNFLQHMMLMLKTGG 292 (425)
T ss_dssp HTTCCSSCCSEEECCTTTSCC--SSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCS------CHHHHHHHHHHHHEEEEE
T ss_pred hcCCccccceeecCchhhhhc--ccccceEEecCCCCCCccccchhhhhhcccccc------cHHHHHHHHHHHhcCCCC
Confidence 988752 24566777765432 368999999999954332111100 00111111 123447999999999999
Q ss_pred EEEEEcC--CCCchhhHHHHHHHHhh
Q 009708 460 VLVYSTC--SIDPEENEERVEAFLLR 483 (528)
Q Consensus 460 ~LvysTc--s~~~~Ene~~v~~~l~~ 483 (528)
++++.+- ++.....+..+.++|.+
T Consensus 293 ~~~iI~p~~~L~~~~~~~~iR~~Ll~ 318 (425)
T d2okca1 293 RAAVVLPDNVLFEAGAGETIRKRLLQ 318 (425)
T ss_dssp EEEEEEEHHHHHCSTHHHHHHHHHHH
T ss_pred eEEEEechHHhhhhhhHHHHHHHHHH
Confidence 8776644 34343333445555544
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=99.01 E-value=5e-10 Score=102.06 Aligned_cols=126 Identities=22% Similarity=0.293 Sum_probs=90.6
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccc-------cCCC
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-------NSTV 405 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~-------~~~~ 405 (528)
.+++.+|||+|||||+++..+++.+.+.+.|+++|+.+- ..+++ +.++++|...... ....
T Consensus 20 ~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~-----------~~i~~-~~~~~~d~~~~~~~~~~~~~~~~~ 87 (180)
T d1ej0a_ 20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM-----------DPIVG-VDFLQGDFRDELVMKALLERVGDS 87 (180)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC-----------CCCTT-EEEEESCTTSHHHHHHHHHHHTTC
T ss_pred cCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc-----------cccCC-ceEeecccccchhhhhhhhhccCc
Confidence 467899999999999999999998888899999998762 23554 7889999876321 1246
Q ss_pred CCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHHHhhC
Q 009708 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRH 484 (528)
Q Consensus 406 ~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~l~~~ 484 (528)
+||+|++|...--+|. ...+-....++-...+.-|.++|++||.+| |.+...+....+...|..+
T Consensus 88 ~~DlVlSD~ap~~sg~-----------~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV---~K~F~g~~~~~l~~~l~~~ 152 (180)
T d1ej0a_ 88 KVQVVMSDMAPNMSGT-----------PAVDIPRAMYLVELALEMCRDVLAPGGSFV---VKVFQGEGFDEYLREIRSL 152 (180)
T ss_dssp CEEEEEECCCCCCCSC-----------HHHHHHHHHHHHHHHHHHHHHHEEEEEEEE---EEEESSTTHHHHHHHHHHH
T ss_pred ceeEEEecccchhccc-----------chhHHHHHHHHHHHHHHhhhhccCCCCcEE---EEEecCccHHHHHHHHHhh
Confidence 7999999955444443 112333344455566888999999999999 5555555555566666654
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=98.99 E-value=1.5e-10 Score=107.31 Aligned_cols=97 Identities=13% Similarity=0.153 Sum_probs=72.8
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEc
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLD 413 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D 413 (528)
.++.+|||+|||+|..+..++ +++|+|+|+.+++.++++ .++++++|+.+++. ..++||+|++.
T Consensus 35 ~~~~~vLDiGcG~G~~~~~~~-------~~~giD~s~~~~~~a~~~--------~~~~~~~d~~~l~~-~~~~fD~I~~~ 98 (208)
T d1vlma_ 35 LPEGRGVEIGVGTGRFAVPLK-------IKIGVEPSERMAEIARKR--------GVFVLKGTAENLPL-KDESFDFALMV 98 (208)
T ss_dssp CCSSCEEEETCTTSTTHHHHT-------CCEEEESCHHHHHHHHHT--------TCEEEECBTTBCCS-CTTCEEEEEEE
T ss_pred CCCCeEEEECCCCcccccccc-------eEEEEeCChhhccccccc--------cccccccccccccc-ccccccccccc
Confidence 356689999999998876653 368999999999998763 27889999988754 34789999962
Q ss_pred CCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCC
Q 009708 414 APCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 468 (528)
Q Consensus 414 ~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~ 468 (528)
.++..-++ ...+|.++.++|+|||.+++.+...
T Consensus 99 ------~~l~h~~d----------------~~~~l~~~~~~L~pgG~l~i~~~~~ 131 (208)
T d1vlma_ 99 ------TTICFVDD----------------PERALKEAYRILKKGGYLIVGIVDR 131 (208)
T ss_dssp ------SCGGGSSC----------------HHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred ------cccccccc----------------cccchhhhhhcCCCCceEEEEecCC
Confidence 22332222 1246899999999999999877543
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=98.95 E-value=5.3e-10 Score=118.66 Aligned_cols=163 Identities=12% Similarity=0.120 Sum_probs=109.2
Q ss_pred cceeEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCC-----------------cEEEEEcCChHHHHHH
Q 009708 314 EGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQ-----------------GLVYAIDINKGRLRIL 376 (528)
Q Consensus 314 ~G~~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~-----------------~~v~avD~s~~~l~~~ 376 (528)
.|.|+....-+.+++.++.+.++.+|+|.|||+|++.+.+.+.+... ..++|+|+++.....+
T Consensus 143 ~GqfyTP~~Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la 222 (524)
T d2ar0a1 143 AGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLA 222 (524)
T ss_dssp --CCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHH
T ss_pred cchhccccchhHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHH
Confidence 58889888889999999999999999999999999999887765321 2589999999999999
Q ss_pred HHHHHHcCCCccE----EEEcCccccccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHh
Q 009708 377 NETAKLHQVNSVI----RTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAAS 452 (528)
Q Consensus 377 ~~n~~~~g~~~~i----~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~ 452 (528)
+.|+-.+|....+ .+...+..........+||+|+.|||++...-...........+ ..+.-++.+++
T Consensus 223 ~~nl~l~~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~--------~~~~~Fi~~~l 294 (524)
T d2ar0a1 223 LMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTS--------NKQLCFMQHII 294 (524)
T ss_dssp HHHHHTTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCS--------CHHHHHHHHHH
T ss_pred HHHHHhhcccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccc--------cccHHHHHHHH
Confidence 9999888875321 12223332222122367999999999965433221111000011 11234899999
Q ss_pred ccCcCCCEEEEEcC-CC-CchhhHHHHHHHHhhC
Q 009708 453 LLVKPGGVLVYSTC-SI-DPEENEERVEAFLLRH 484 (528)
Q Consensus 453 ~~LkpGG~LvysTc-s~-~~~Ene~~v~~~l~~~ 484 (528)
+.||+||++++.+- ++ +....+..+.++|-++
T Consensus 295 ~~Lk~gGr~aiIlP~~~Lf~~~~~~~iR~~Ll~~ 328 (524)
T d2ar0a1 295 ETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDK 328 (524)
T ss_dssp HHEEEEEEEEEEEEHHHHHCCTHHHHHHHHHHHH
T ss_pred HhccccCcEEEEEehHHhhhhhhhHHHHHHHHHc
Confidence 99999999887653 33 2333344455555443
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.94 E-value=5.8e-10 Score=112.93 Aligned_cols=105 Identities=21% Similarity=0.179 Sum_probs=84.2
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCc--------------cEEEEcCcccccc
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS--------------VIRTIHADLRTFA 400 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~--------------~i~~~~~D~~~~~ 400 (528)
.+.+|||++||+|..++..|...+ ..+|+++|+|+..++.+++|++.+++.+ .+.+.+.|+..+.
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~~-~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~ 123 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALETP-AEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLM 123 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSS-CSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHH
T ss_pred CCCEEEEcCCCccHHHHHHHHhCC-CCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhh
Confidence 467999999999999998887654 5689999999999999999999998753 3567778877665
Q ss_pred ccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 401 DNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 401 ~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
......||+|.+||.-|. ..+|+.|.+.++.||.| +.|||
T Consensus 124 ~~~~~~fDvIDiDPfGs~--------------------------~pfldsAi~a~~~~Gll-~vTaT 163 (375)
T d2dula1 124 AERHRYFHFIDLDPFGSP--------------------------MEFLDTALRSAKRRGIL-GVTAT 163 (375)
T ss_dssp HHSTTCEEEEEECCSSCC--------------------------HHHHHHHHHHEEEEEEE-EEEEC
T ss_pred HhhcCcCCcccCCCCCCc--------------------------HHHHHHHHHHhccCCEE-EEEec
Confidence 544578999999984332 13699999999988854 56676
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.94 E-value=3.1e-09 Score=108.28 Aligned_cols=113 Identities=12% Similarity=0.134 Sum_probs=79.6
Q ss_pred HHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcC-------CC-ccEEE-EcCccc
Q 009708 327 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQ-------VN-SVIRT-IHADLR 397 (528)
Q Consensus 327 ~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g-------~~-~~i~~-~~~D~~ 397 (528)
+...+++++|++|||+|||+|..++++|...+ ..+|+|||+++.+++.|+++++..+ .. ..+.+ ..+|..
T Consensus 208 Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g-~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~ 286 (406)
T d1u2za_ 208 VYQQCQLKKGDTFMDLGSGVGNCVVQAALECG-CALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFV 286 (406)
T ss_dssp HHHHTTCCTTCEEEEESCTTSHHHHHHHHHHC-CSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCST
T ss_pred HHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechh
Confidence 44567899999999999999999999998754 4689999999999999999988643 11 11222 344444
Q ss_pred ccccc--CCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEE
Q 009708 398 TFADN--STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463 (528)
Q Consensus 398 ~~~~~--~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvy 463 (528)
..... .-..+|+|+++--|.. .++ ...|.++++.|||||+||.
T Consensus 287 ~~~~~d~~~~~adVV~inn~~f~----------------~~l-------~~~L~ei~r~LKPGGrIVs 331 (406)
T d1u2za_ 287 DNNRVAELIPQCDVILVNNFLFD----------------EDL-------NKKVEKILQTAKVGCKIIS 331 (406)
T ss_dssp TCHHHHHHGGGCSEEEECCTTCC----------------HHH-------HHHHHHHHTTCCTTCEEEE
T ss_pred hccccccccccceEEEEecccCc----------------hHH-------HHHHHHHHHhcCCCcEEEE
Confidence 32211 1235788988633311 222 2348889999999999984
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.90 E-value=1.6e-09 Score=103.36 Aligned_cols=139 Identities=20% Similarity=0.103 Sum_probs=84.5
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccE-----------------------
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVI----------------------- 389 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i----------------------- 389 (528)
..+|.+|||+|||+|..+..++.. +..+|+|+|+|+.+++.++++++..+.....
T Consensus 49 ~~~g~~vLDlGcG~G~~~~~~~~~--~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (257)
T d2a14a1 49 GLQGDTLIDIGSGPTIYQVLAACD--SFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEK 126 (257)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGGG--TEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred CCCCCEEEEECCCCCHhHHHHhcc--ccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHH
Confidence 356789999999999988777653 2347999999999999999999876543100
Q ss_pred ------EEEcCcccc--c-cccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCE
Q 009708 390 ------RTIHADLRT--F-ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGV 460 (528)
Q Consensus 390 ------~~~~~D~~~--~-~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~ 460 (528)
.....+... . .....++||+|++. .++ +.+.........+++++.++|||||+
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~------~~l------------~~~~~~~~~~~~~l~~i~~~LkpGG~ 188 (257)
T d2a14a1 127 LRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTL------LAM------------ECACCSLDAYRAALCNLASLLKPGGH 188 (257)
T ss_dssp HHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEE------SCH------------HHHCSSHHHHHHHHHHHHTTEEEEEE
T ss_pred HhhhhhcccccccccccccccccCCcccEEeeh------hhH------------HHhcccHHHHHHHHHHHHhccCCCcE
Confidence 011111110 0 11124679998852 111 11111112334569999999999999
Q ss_pred EEEEcCCCCc------------hhhHHHHHHHHhhCCCceEecC
Q 009708 461 LVYSTCSIDP------------EENEERVEAFLLRHPEFSIDPA 492 (528)
Q Consensus 461 LvysTcs~~~------------~Ene~~v~~~l~~~~~~~~~~~ 492 (528)
++.++..-.. .-+.+.+...+++. +|+++.+
T Consensus 189 li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a-Gf~v~~~ 231 (257)
T d2a14a1 189 LVTTVTLRLPSYMVGKREFSCVALEKGEVEQAVLDA-GFDIEQL 231 (257)
T ss_dssp EEEEEESSCCEEEETTEEEECCCCCHHHHHHHHHHT-TEEEEEE
T ss_pred EEEEEecccccceeccccccccCCCHHHHHHHHHHC-CCEEEEE
Confidence 9987643211 01234455666653 5765543
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.73 E-value=8e-09 Score=100.13 Aligned_cols=113 Identities=11% Similarity=0.009 Sum_probs=76.2
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHcC-----CCcEEEEEcCChHHHHHHHHHHHHcCCCccE--EEEcCcccccc-----
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCLS-----GQGLVYAIDINKGRLRILNETAKLHQVNSVI--RTIHADLRTFA----- 400 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~~-----~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i--~~~~~D~~~~~----- 400 (528)
.+++.+|||+|||+|..+..++..+. ....++|+|+|+.+++.++++++....-..+ .+.+.++..+.
T Consensus 38 ~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (280)
T d1jqea_ 38 TKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLE 117 (280)
T ss_dssp TCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTT
T ss_pred CCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcc
Confidence 34445899999999999988876542 1346899999999999999998764332223 44555544321
Q ss_pred ccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 401 DNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 401 ~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
.....+||+|++- .++..-+| . ..+|+++.++|+|||.|++.+.+
T Consensus 118 ~~~~~~fD~I~~~------~~l~~~~d---------~-------~~~l~~l~~~LkpgG~l~i~~~~ 162 (280)
T d1jqea_ 118 KKELQKWDFIHMI------QMLYYVKD---------I-------PATLKFFHSLLGTNAKMLIIVVS 162 (280)
T ss_dssp SSSCCCEEEEEEE------SCGGGCSC---------H-------HHHHHHHHHTEEEEEEEEEEEEC
T ss_pred cCCCCceeEEEEc------cceecCCC---------H-------HHHHHHHHhhCCCCCEEEEEEec
Confidence 1225789999962 12222221 1 23599999999999999876554
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.65 E-value=9.3e-08 Score=93.23 Aligned_cols=118 Identities=13% Similarity=0.167 Sum_probs=87.1
Q ss_pred cCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcC--C-CccEEEEcCccccccccCCCCC
Q 009708 331 VDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQ--V-NSVIRTIHADLRTFADNSTVKC 407 (528)
Q Consensus 331 l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g--~-~~~i~~~~~D~~~~~~~~~~~f 407 (528)
+.+.| .+||-+|.|.|+.+..+++. .+..+|++||+++..++.+++.+.... + +.+++++.+|+..+.....++|
T Consensus 86 ~~~~p-k~VLiiGgG~G~~~r~~l~~-~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~y 163 (295)
T d1inla_ 86 LHPNP-KKVLIIGGGDGGTLREVLKH-DSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEF 163 (295)
T ss_dssp HSSSC-CEEEEEECTTCHHHHHHTTS-TTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCE
T ss_pred hCCCC-ceEEEecCCchHHHHHHHhc-CCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCC
Confidence 44444 59999999999998888875 345689999999999999999765432 1 3579999999999987777889
Q ss_pred CEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 408 DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 408 D~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
|+|++|.+....|...+ -...++++.+.+.|+|||+++.-+-+
T Consensus 164 DvIi~D~~dp~~~~~~~-----------------L~t~efy~~~~~~L~~~Gi~v~q~~s 206 (295)
T d1inla_ 164 DVIIIDSTDPTAGQGGH-----------------LFTEEFYQACYDALKEDGVFSAETED 206 (295)
T ss_dssp EEEEEEC---------------------------CCSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred CEEEEcCCCCCcCchhh-----------------hccHHHHHHHHhhcCCCcEEEEecCC
Confidence 99999986532121000 01356789999999999999976544
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.62 E-value=1.8e-08 Score=97.10 Aligned_cols=113 Identities=18% Similarity=0.161 Sum_probs=72.0
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCC--------------------------
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN-------------------------- 386 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~-------------------------- 386 (528)
...|.+|||+|||||..++..+.. ...+|+|+|+|+.+++.++++++..+..
T Consensus 52 ~~~g~~vLDiGcG~g~~~~~~~~~--~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 129 (263)
T d2g72a1 52 EVSGRTLIDIGSGPTVYQLLSACS--HFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQ 129 (263)
T ss_dssp CSCCSEEEEETCTTCCGGGTTGGG--GCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHH
T ss_pred CCCCcEEEEeccCCCHHHHHHhcc--cCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHH
Confidence 446889999999999887655543 2458999999999999999887643311
Q ss_pred ---ccEEEEcCccccccc-----cCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCC
Q 009708 387 ---SVIRTIHADLRTFAD-----NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPG 458 (528)
Q Consensus 387 ---~~i~~~~~D~~~~~~-----~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpG 458 (528)
....+...|+..-.. ...+.||+|++- .. .+.+..-.......|+++.++||||
T Consensus 130 ~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~---~~---------------l~~i~~~~~~~~~~l~~~~~~LkPG 191 (263)
T d2g72a1 130 LRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSA---FC---------------LEAVSPDLASFQRALDHITTLLRPG 191 (263)
T ss_dssp HHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEE---SC---------------HHHHCSSHHHHHHHHHHHHTTEEEE
T ss_pred hhhhhhccccccccCCCccccCCcCcCccCeeeeH---HH---------------HHHHccCHHHHHHHHHHHHHHcCCC
Confidence 011234455543221 113579999861 10 0111000112356799999999999
Q ss_pred CEEEEEc
Q 009708 459 GVLVYST 465 (528)
Q Consensus 459 G~LvysT 465 (528)
|+|++.+
T Consensus 192 G~li~~~ 198 (263)
T d2g72a1 192 GHLLLIG 198 (263)
T ss_dssp EEEEEEE
T ss_pred CEEEEec
Confidence 9998654
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.58 E-value=5.4e-08 Score=95.90 Aligned_cols=115 Identities=15% Similarity=0.178 Sum_probs=86.1
Q ss_pred CCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHc--C--CCccEEEEcCccccccccCCCCC
Q 009708 332 DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLH--Q--VNSVIRTIHADLRTFADNSTVKC 407 (528)
Q Consensus 332 ~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~--g--~~~~i~~~~~D~~~~~~~~~~~f 407 (528)
.+. ..+||.+|.|.|+.+.++++. .+..+|++||+++..++.+++.+... + -+.+++++.+|+..+......+|
T Consensus 75 ~~~-pk~VLiiG~G~G~~~~~ll~~-~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~y 152 (312)
T d1uira_ 75 HPE-PKRVLIVGGGEGATLREVLKH-PTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERY 152 (312)
T ss_dssp SSC-CCEEEEEECTTSHHHHHHTTS-TTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCE
T ss_pred CCC-cceEEEeCCCchHHHHHHHhc-CCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcc
Confidence 344 458999999999999888765 44679999999999999999987543 1 13569999999999877666789
Q ss_pred CEEEEcCCC--CCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 408 DKVLLDAPC--SGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 408 D~Vl~D~Pc--sg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
|+|++|++- ...+. +... ...++++.+.+.|+|||+++.-+
T Consensus 153 DvIi~D~~dp~~~~~~----~~~L-------------~t~eF~~~~~~~L~p~Gvlv~~~ 195 (312)
T d1uira_ 153 DVVIIDLTDPVGEDNP----ARLL-------------YTVEFYRLVKAHLNPGGVMGMQT 195 (312)
T ss_dssp EEEEEECCCCBSTTCG----GGGG-------------SSHHHHHHHHHTEEEEEEEEEEE
T ss_pred cEEEEeCCCcccccch----hhhh-------------hhHHHHHHHHHhcCCCceEEEec
Confidence 999999742 21111 0000 12456888999999999988654
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.52 E-value=1e-07 Score=92.38 Aligned_cols=131 Identities=12% Similarity=0.126 Sum_probs=90.7
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHc---------CCCccEEEEcCccccccccCCC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLH---------QVNSVIRTIHADLRTFADNSTV 405 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~---------g~~~~i~~~~~D~~~~~~~~~~ 405 (528)
...+||-+|+|.|+.+..++.. +..+|++||+++..++.+++.+... .-+.+++++.+|+..+... .+
T Consensus 72 ~p~~vLiiG~G~G~~~~~~l~~--~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~-~~ 148 (276)
T d1mjfa_ 72 KPKRVLVIGGGDGGTVREVLQH--DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NR 148 (276)
T ss_dssp CCCEEEEEECTTSHHHHHHTTS--CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CC
T ss_pred CCceEEEecCCchHHHHHHHHh--CCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhc-cC
Confidence 3469999999999998888764 4468999999999999999765322 2245799999999988754 47
Q ss_pred CCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC--CCchhhHHHHHHHHhh
Q 009708 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS--IDPEENEERVEAFLLR 483 (528)
Q Consensus 406 ~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs--~~~~Ene~~v~~~l~~ 483 (528)
+||+|++|++.. .|... . -...++++.+.+.|+|||++|.-+-+ ..++....+...+-+.
T Consensus 149 ~yDvIi~D~~~~-~~~~~---------------~--L~t~eF~~~~~~~L~~~Gv~v~q~~s~~~~~~~~~~~~~tl~~~ 210 (276)
T d1mjfa_ 149 GFDVIIADSTDP-VGPAK---------------V--LFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKV 210 (276)
T ss_dssp CEEEEEEECCCC-C----------------------TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCC-CCCcc---------------c--ccCHHHHHhhHhhcCCCceEEEecCCcchhHHHHHHHHHHHHhh
Confidence 899999998762 22200 0 01245788999999999998854322 3344444444444444
Q ss_pred CCC
Q 009708 484 HPE 486 (528)
Q Consensus 484 ~~~ 486 (528)
.+.
T Consensus 211 F~~ 213 (276)
T d1mjfa_ 211 FDR 213 (276)
T ss_dssp CSE
T ss_pred CCe
Confidence 443
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.49 E-value=1.9e-07 Score=88.28 Aligned_cols=88 Identities=14% Similarity=0.163 Sum_probs=72.1
Q ss_pred hHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc
Q 009708 323 SAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 402 (528)
Q Consensus 323 ~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~ 402 (528)
...-++..+++.++++||++|||+|..|..+++. ..+|+|||+++..++.++++... .+ +++++++|+.++...
T Consensus 9 i~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~---~~~v~avE~D~~l~~~l~~~~~~--~~-n~~i~~~D~l~~~~~ 82 (235)
T d1qama_ 9 NIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQR---CNFVTAIEIDHKLCKTTENKLVD--HD-NFQVLNKDILQFKFP 82 (235)
T ss_dssp HHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEECSCHHHHHHHHHHTTT--CC-SEEEECCCGGGCCCC
T ss_pred HHHHHHHhcCCCCCCeEEEECCCchHHHHHHHhC---cCceEEEeeccchHHHHHHHhhc--cc-chhhhhhhhhhcccc
Confidence 3456777888999999999999999999999986 46899999999999999886543 34 499999999987543
Q ss_pred CCCCCCEEEEcCCCC
Q 009708 403 STVKCDKVLLDAPCS 417 (528)
Q Consensus 403 ~~~~fD~Vl~D~Pcs 417 (528)
. .....|+.|.|+.
T Consensus 83 ~-~~~~~vv~NLPYn 96 (235)
T d1qama_ 83 K-NQSYKIFGNIPYN 96 (235)
T ss_dssp S-SCCCEEEEECCGG
T ss_pred c-cccceeeeeehhh
Confidence 2 3345789999993
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=98.44 E-value=1.6e-07 Score=89.11 Aligned_cols=90 Identities=21% Similarity=0.182 Sum_probs=74.4
Q ss_pred HHHHHHhcCCCCC--CeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCC--------ccEEEEc
Q 009708 324 AGLVVAVVDPQPG--QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN--------SVIRTIH 393 (528)
Q Consensus 324 s~l~~~~l~~~~g--~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~--------~~i~~~~ 393 (528)
.+.++.++..+++ .+|||+.||.|..++.+|.. +++|+++|.++.....++++++++... .++++++
T Consensus 75 ~~~l~kA~gl~~~~~~~VlD~TaGlG~Da~vlA~~---G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~ 151 (250)
T d2oyra1 75 GEAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIH 151 (250)
T ss_dssp GSHHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHH---TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEE
T ss_pred hhHHHHHhcCCCCCCCEEEECCCcccHHHHHHHhC---CCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeec
Confidence 3456666665554 48999999999999999987 478999999999999999988876432 2689999
Q ss_pred CccccccccCCCCCCEEEEcCCC
Q 009708 394 ADLRTFADNSTVKCDKVLLDAPC 416 (528)
Q Consensus 394 ~D~~~~~~~~~~~fD~Vl~D~Pc 416 (528)
+|+.++.......||+|.+||++
T Consensus 152 ~Ds~~~L~~~~~~~DvIYlDPMF 174 (250)
T d2oyra1 152 ASSLTALTDITPRPQVVYLDPMF 174 (250)
T ss_dssp SCHHHHSTTCSSCCSEEEECCCC
T ss_pred CcHHHHHhccCCCCCEEEECCCC
Confidence 99998876656789999999998
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.42 E-value=3.2e-07 Score=89.79 Aligned_cols=115 Identities=13% Similarity=0.137 Sum_probs=84.2
Q ss_pred cCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCC---CccEEEEcCccccccccCCCCC
Q 009708 331 VDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQV---NSVIRTIHADLRTFADNSTVKC 407 (528)
Q Consensus 331 l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~---~~~i~~~~~D~~~~~~~~~~~f 407 (528)
+.+. ..+||-+|.|.|+.+..+++. .+..+|+.||+++..++.+++.+..+.. +.+++++.+|+..+......+|
T Consensus 103 ~~~~-pk~VLIiGgG~G~~~rellk~-~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~y 180 (312)
T d2b2ca1 103 AHPD-PKRVLIIGGGDGGILREVLKH-ESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEF 180 (312)
T ss_dssp HSSS-CCEEEEESCTTSHHHHHHTTC-TTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCE
T ss_pred cCCC-CCeEEEeCCCchHHHHHHHHc-CCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCC
Confidence 3444 458999999999999988875 3446999999999999999987654321 2469999999999887667889
Q ss_pred CEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 408 DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 408 D~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
|+|++|++-. .|. + ..-...++++.+.+.|+|||++|.-+
T Consensus 181 DvII~D~~dp-~~~----~-------------~~L~t~eFy~~~~~~L~~~Gi~v~q~ 220 (312)
T d2b2ca1 181 DVIITDSSDP-VGP----A-------------ESLFGQSYYELLRDALKEDGILSSQG 220 (312)
T ss_dssp EEEEECCC-------------------------------HHHHHHHHEEEEEEEEEEC
T ss_pred CEEEEcCCCC-CCc----c-------------hhhhhHHHHHHHHhhcCCCcEEEEec
Confidence 9999997752 111 0 01133567899999999999998754
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.40 E-value=4.3e-07 Score=87.68 Aligned_cols=88 Identities=13% Similarity=0.157 Sum_probs=75.5
Q ss_pred HHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC
Q 009708 324 AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS 403 (528)
Q Consensus 324 s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~ 403 (528)
...++..+++.+++.||++|+|+|..|..+++. ..+|+|+|+++..++.+++.+.......+++++++|+..+..
T Consensus 10 ~~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~---~~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~-- 84 (278)
T d1zq9a1 10 INSIIDKAALRPTDVVLEVGPGTGNMTVKLLEK---AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDL-- 84 (278)
T ss_dssp HHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHH---SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCC--
T ss_pred HHHHHHHhCCCCCCEEEEECCCchHHHHHHHhc---CCcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhh--
Confidence 456677788889999999999999999999986 469999999999999999998877665679999999987653
Q ss_pred CCCCCEEEEcCCCC
Q 009708 404 TVKCDKVLLDAPCS 417 (528)
Q Consensus 404 ~~~fD~Vl~D~Pcs 417 (528)
..++.|+.|.|++
T Consensus 85 -~~~~~vV~NLPY~ 97 (278)
T d1zq9a1 85 -PFFDTCVANLPYQ 97 (278)
T ss_dssp -CCCSEEEEECCGG
T ss_pred -hhhhhhhcchHHH
Confidence 3467899999984
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.40 E-value=7e-07 Score=86.10 Aligned_cols=112 Identities=13% Similarity=0.097 Sum_probs=86.1
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHc-CC--CccEEEEcCccccccccCCCCCCEEE
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLH-QV--NSVIRTIHADLRTFADNSTVKCDKVL 411 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~-g~--~~~i~~~~~D~~~~~~~~~~~fD~Vl 411 (528)
...+||-+|.|.|+.+..+.+. .+..+|+.||+++..++.+++.+..+ +. +.+++++.+|+..+......+||+|+
T Consensus 75 ~p~~vLiiGgG~G~~~~~~l~~-~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi 153 (274)
T d1iy9a_ 75 NPEHVLVVGGGDGGVIREILKH-PSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (274)
T ss_dssp SCCEEEEESCTTCHHHHHHTTC-TTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CcceEEecCCCCcHHHHHHHhc-CCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEE
Confidence 3469999999999999988865 34579999999999999999976542 21 34699999999998876678899999
Q ss_pred EcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 412 LDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 412 ~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
+|++.. .|. +... ..+++.+.+.+.|+|||+++.-+
T Consensus 154 ~D~~~p-~~~----~~~L-------------~t~eFy~~~~~~L~~~Gv~v~q~ 189 (274)
T d1iy9a_ 154 VDSTEP-VGP----AVNL-------------FTKGFYAGIAKALKEDGIFVAQT 189 (274)
T ss_dssp ESCSSC-CSC----CCCC-------------STTHHHHHHHHHEEEEEEEEEEC
T ss_pred EcCCCC-CCc----chhh-------------ccHHHHHHHHhhcCCCceEEEec
Confidence 998763 221 1000 12456888999999999998654
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.38 E-value=3.4e-07 Score=88.86 Aligned_cols=113 Identities=14% Similarity=0.153 Sum_probs=84.6
Q ss_pred CCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcC---CCccEEEEcCccccccccCCCCCCEEEE
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQ---VNSVIRTIHADLRTFADNSTVKCDKVLL 412 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g---~~~~i~~~~~D~~~~~~~~~~~fD~Vl~ 412 (528)
.++||-+|.|.|+.+..+.+. .+..+|+.||+++..++.+++.+..+. -+.+++++.+|+..+.....++||+|++
T Consensus 79 pk~vLiiGgG~G~~~~~~l~~-~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi~ 157 (285)
T d2o07a1 79 PRKVLIIGGGDGGVLREVVKH-PSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIIT 157 (285)
T ss_dssp CCEEEEEECTTSHHHHHHTTC-TTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEE
T ss_pred cCeEEEeCCCchHHHHHHHHc-CCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEEE
Confidence 468999999999999888765 445799999999999999998765321 1357999999999988766678999999
Q ss_pred cCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 413 DAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 413 D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
|++-. .|. + . .-.+.++++.+.+.|+|||+++.-+-+
T Consensus 158 D~~~p-~~~----~-----------~--~L~t~eF~~~~~~~L~~~Gi~v~q~~s 194 (285)
T d2o07a1 158 DSSDP-MGP----A-----------E--SLFKESYYQLMKTALKEDGVLCCQGEC 194 (285)
T ss_dssp ECC-----------------------------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred cCCCC-CCc----c-----------c--ccccHHHHHHHHHhcCCCCeEEEeccc
Confidence 97642 121 0 0 113456799999999999999875434
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.25 E-value=3.2e-06 Score=82.03 Aligned_cols=133 Identities=15% Similarity=0.142 Sum_probs=94.3
Q ss_pred CCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcC---CCccEEEEcCccccccccC-CCCCCEEE
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQ---VNSVIRTIHADLRTFADNS-TVKCDKVL 411 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g---~~~~i~~~~~D~~~~~~~~-~~~fD~Vl 411 (528)
..+||=+|-|.|+....+++. .+..+|+.||+++..++.+++.+.... -+.+++++.+|+..+.... .++||+|+
T Consensus 81 pk~VLiiGgG~G~~~r~~l~~-~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvIi 159 (290)
T d1xj5a_ 81 PKKVLVIGGGDGGVLREVARH-ASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVI 159 (290)
T ss_dssp CCEEEEETCSSSHHHHHHTTC-TTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEE
T ss_pred CcceEEecCCchHHHHHHHhc-ccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEEE
Confidence 358999999999999888765 344689999999999999999764321 2456999999999887544 45899999
Q ss_pred EcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCC--chhhHHHHHHHHhhCCCc
Q 009708 412 LDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSID--PEENEERVEAFLLRHPEF 487 (528)
Q Consensus 412 ~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~--~~Ene~~v~~~l~~~~~~ 487 (528)
+|++-. .|. +... ...++++.+.+.|+|||++|.-+-|.. ++.-...+..+.+-.|..
T Consensus 160 ~D~~dp-~~~----~~~L-------------~t~eF~~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~i~~~l~~vF~~~ 219 (290)
T d1xj5a_ 160 VDSSDP-IGP----AKEL-------------FEKPFFQSVARALRPGGVVCTQAESLWLHMDIIEDIVSNCREIFKGS 219 (290)
T ss_dssp ECCCCT-TSG----GGGG-------------GSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCSSC
T ss_pred EcCCCC-CCc----chhh-------------CCHHHHHHHHHhcCCCcEEEEecCCcHHHHHHHHHHHhhhhhhcccc
Confidence 998752 222 1101 235678899999999999998765543 222233444444445543
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=98.25 E-value=1.7e-06 Score=79.74 Aligned_cols=101 Identities=15% Similarity=0.235 Sum_probs=82.4
Q ss_pred CCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAP 415 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~P 415 (528)
+.+|+|+|||.|-=++-+|-. .+..+++.+|.+..++..+++-...+|++| +++++..+.++.. ..+||.|++=+=
T Consensus 66 ~~~ilDiGsGaG~PGi~laI~-~p~~~~~Lves~~KK~~FL~~~~~~L~L~n-v~v~~~R~E~~~~--~~~fD~V~sRA~ 141 (207)
T d1jsxa_ 66 GERFIDVGTGPGLPGIPLSIV-RPEAHFTLLDSLGKRVRFLRQVQHELKLEN-IEPVQSRVEEFPS--EPPFDGVISRAF 141 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHH-CTTSEEEEEESCHHHHHHHHHHHHHTTCSS-EEEEECCTTTSCC--CSCEEEEECSCS
T ss_pred CCceeeeeccCCceeeehhhh-cccceEEEEecchHHHHHHHHHHHHcCCcc-eeeeccchhhhcc--ccccceehhhhh
Confidence 568999999999999888865 457899999999999999999999999986 8999999887653 257999985222
Q ss_pred CCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcC
Q 009708 416 CSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466 (528)
Q Consensus 416 csg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTc 466 (528)
+ .+ ..++.-+..++++||.++...-
T Consensus 142 ~-------------------~~-------~~ll~~~~~~l~~~g~~~~~KG 166 (207)
T d1jsxa_ 142 A-------------------SL-------NDMVSWCHHLPGEQGRFYALKG 166 (207)
T ss_dssp S-------------------SH-------HHHHHHHTTSEEEEEEEEEEES
T ss_pred c-------------------CH-------HHHHHHHHHhcCCCcEEEEECC
Confidence 2 11 2358889999999999886654
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.15 E-value=1.4e-07 Score=89.74 Aligned_cols=93 Identities=16% Similarity=0.240 Sum_probs=73.5
Q ss_pred Eeecch-HHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcc
Q 009708 318 AVQDES-AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL 396 (528)
Q Consensus 318 ~~Qd~~-s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~ 396 (528)
++.|.. ..-++..+++.++++|||+|||+|..|..+++. ..+|+|||+++.+++.+++++. ...+++++++|+
T Consensus 11 FL~d~~ii~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~---~~~v~aIE~D~~l~~~l~~~~~---~~~n~~ii~~D~ 84 (245)
T d1yuba_ 11 FLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI---SKQVTSIELDSHLFNLSSEKLK---LNTRVTLIHQDI 84 (245)
T ss_dssp BCCCTTTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHH---SSEEEESSSSCSSSSSSSCTTT---TCSEEEECCSCC
T ss_pred ccCCHHHHHHHHHhcCCCCCCeEEEECCCccHHHHHHHhh---cCceeEeeecccchhhhhhhhh---hccchhhhhhhh
Confidence 334443 456778889999999999999999999999986 4699999999999988776543 223599999999
Q ss_pred ccccccCCCCCCEEEEcCCCC
Q 009708 397 RTFADNSTVKCDKVLLDAPCS 417 (528)
Q Consensus 397 ~~~~~~~~~~fD~Vl~D~Pcs 417 (528)
.++... ...++.|+.+.|+.
T Consensus 85 l~~~~~-~~~~~~vv~NLPY~ 104 (245)
T d1yuba_ 85 LQFQFP-NKQRYKIVGNIPYH 104 (245)
T ss_dssp TTTTCC-CSSEEEEEEECCSS
T ss_pred hccccc-cceeeeEeeeeehh
Confidence 987543 35567899999984
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=98.12 E-value=1.7e-05 Score=74.09 Aligned_cols=133 Identities=15% Similarity=0.081 Sum_probs=71.9
Q ss_pred CCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEE
Q 009708 332 DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVL 411 (528)
Q Consensus 332 ~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl 411 (528)
.++++.+|+|+||||||++-.++.+. +...|.|+++--...+. -...+.++. +.+++...+-.... .++..|.|+
T Consensus 63 ~~~~~~~vvDlG~~pGgws~~~a~~~-~v~~V~g~~iG~d~~e~-P~~~~~~~~-ni~~~~~~~dv~~l--~~~~~D~vl 137 (257)
T d2p41a1 63 LVTPEGKVVDLGCGRGGWSYYCGGLK-NVREVKGLTKGGPGHEE-PIPMSTYGW-NLVRLQSGVDVFFI--PPERCDTLL 137 (257)
T ss_dssp SSCCCEEEEEETCTTSHHHHHHHTST-TEEEEEEECCCSTTSCC-CCCCCSTTG-GGEEEECSCCTTTS--CCCCCSEEE
T ss_pred CccCCCeEEEecCCCChHHHHHHhhc-CCCceeEEEecCccccC-Ccccccccc-ccccchhhhhHHhc--CCCcCCEEE
Confidence 35677899999999999999998763 23467777773111000 000011111 23444433322111 246799999
Q ss_pred EcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHHHhhCC
Q 009708 412 LDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHP 485 (528)
Q Consensus 412 ~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~l~~~~ 485 (528)
||.--| +|. + .+++.-. .++|+-|.++|+|||.+|.-.-..+.++-.+.++.|-.++.
T Consensus 138 cDm~es-s~~----~---------~vd~~Rt--l~vLela~~wLk~gg~FvvKVl~py~~~v~e~le~lq~~fg 195 (257)
T d2p41a1 138 CDIGES-SPN----P---------TVEAGRT--LRVLNLVENWLSNNTQFCVKVLNPYMSSVIEKMEALQRKHG 195 (257)
T ss_dssp ECCCCC-CSS----H---------HHHHHHH--HHHHHHHHHHCCTTCEEEEEESCCCSHHHHHHHHHHHHHHC
T ss_pred eeCCCC-CCC----c---------hhhhhhH--HHHHHHHHHHcccCCEEEEEECCCCChHHHHHHHHHHHHhC
Confidence 995332 332 1 2222211 25688899999999988743322223333334444444443
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=98.09 E-value=5.8e-06 Score=77.67 Aligned_cols=106 Identities=22% Similarity=0.242 Sum_probs=84.3
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc--CCCCCCEEE
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN--STVKCDKVL 411 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~--~~~~fD~Vl 411 (528)
.++.+|+|+|+|.|-=++-+|-.+ +..+++-+|.+..++..++.-.+.+|++| +.+++..+..+... ..++||.|+
T Consensus 69 ~~~~~ilDiGSGaGfPGi~laI~~-p~~~v~Lves~~KK~~FL~~v~~~L~L~n-~~i~~~R~E~~~~~~~~~~~~D~v~ 146 (239)
T d1xdza_ 69 NQVNTICDVGAGAGFPSLPIKICF-PHLHVTIVDSLNKRITFLEKLSEALQLEN-TTFCHDRAETFGQRKDVRESYDIVT 146 (239)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHTCSS-EEEEESCHHHHTTCTTTTTCEEEEE
T ss_pred cCCCeEEeecCCCchHHHHHHHhC-CCccceeecchHHHHHHHHHHHHHhCCCC-cEEEeehhhhccccccccccceEEE
Confidence 346789999999999998888764 46899999999999999999999999997 78889888766432 246799998
Q ss_pred EcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 412 LDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 412 ~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
+=+=. .+ ..++.-+..++++||++++.--.
T Consensus 147 sRAva-------------------~l-------~~ll~~~~~~l~~~g~~i~~KG~ 176 (239)
T d1xdza_ 147 ARAVA-------------------RL-------SVLSELCLPLVKKNGLFVALKAA 176 (239)
T ss_dssp EECCS-------------------CH-------HHHHHHHGGGEEEEEEEEEEECC
T ss_pred Ehhhh-------------------CH-------HHHHHHHhhhcccCCEEEEECCC
Confidence 63222 11 23588899999999998866544
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=98.01 E-value=3.2e-06 Score=80.32 Aligned_cols=89 Identities=16% Similarity=0.171 Sum_probs=69.2
Q ss_pred HHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC
Q 009708 324 AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS 403 (528)
Q Consensus 324 s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~ 403 (528)
..-+++.+++.+++.||++|||+|..|..|++. ..+|+|+|+++..++.+++... ..++++++++|+..+....
T Consensus 10 ~~~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~---~~~v~aiEiD~~l~~~L~~~~~---~~~~~~ii~~D~l~~~~~~ 83 (252)
T d1qyra_ 10 IDSIVSAINPQKGQAMVEIGPGLAALTEPVGER---LDQLTVIELDRDLAARLQTHPF---LGPKLTIYQQDAMTFNFGE 83 (252)
T ss_dssp HHHHHHHHCCCTTCCEEEECCTTTTTHHHHHTT---CSCEEEECCCHHHHHHHHTCTT---TGGGEEEECSCGGGCCHHH
T ss_pred HHHHHHhcCCCCCCEEEEECCCchHHHHHHHcc---CCceEEEEeccchhHHHHHHhh---hccchhHHhhhhhhhcccc
Confidence 345677888899999999999999999999875 4689999999999999876432 2245999999998764321
Q ss_pred ----CCCCCEEEEcCCCCC
Q 009708 404 ----TVKCDKVLLDAPCSG 418 (528)
Q Consensus 404 ----~~~fD~Vl~D~Pcsg 418 (528)
....-.|+.|.|++-
T Consensus 84 ~~~~~~~~~~vvgNlPY~I 102 (252)
T d1qyra_ 84 LAEKMGQPLRVFGNLPYNI 102 (252)
T ss_dssp HHHHHTSCEEEEEECCTTT
T ss_pred cccccCCCeEEEecchHHH
Confidence 122347889999953
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.90 E-value=2.2e-05 Score=74.03 Aligned_cols=110 Identities=16% Similarity=0.120 Sum_probs=77.2
Q ss_pred HHHHhcC-CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCC
Q 009708 326 LVVAVVD-PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 404 (528)
Q Consensus 326 l~~~~l~-~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~ 404 (528)
-++...+ .....+|||+|||+|..+..+++.. +..+++.+|+. .. ++..+..++++++.+|+++..+
T Consensus 71 ~l~~~~~~f~~~~~vlDiGGG~G~~~~~l~~~~-P~l~~~v~Dlp-~v-------i~~~~~~~ri~~~~gd~~~~~p--- 138 (244)
T d1fp1d2 71 RMLEIYTGFEGISTLVDVGGGSGRNLELIISKY-PLIKGINFDLP-QV-------IENAPPLSGIEHVGGDMFASVP--- 138 (244)
T ss_dssp HHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEECH-HH-------HTTCCCCTTEEEEECCTTTCCC---
T ss_pred HHHHhcccccCCcEEEEecCCCcHHHHHHHHHC-CCCeEEEecch-hh-------hhccCCCCCeEEecCCcccccc---
Confidence 3444455 3445799999999999999999984 57899999973 33 3344555679999999875332
Q ss_pred CCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCC
Q 009708 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 468 (528)
Q Consensus 405 ~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~ 468 (528)
..|+|++-- ++ +.++.++.. ++|+++.+.|+|||+|++....+
T Consensus 139 -~~D~~~l~~------vL-------h~~~de~~~-------~iL~~~~~aL~pgg~llI~e~v~ 181 (244)
T d1fp1d2 139 -QGDAMILKA------VC-------HNWSDEKCI-------EFLSNCHKALSPNGKVIIVEFIL 181 (244)
T ss_dssp -CEEEEEEES------SG-------GGSCHHHHH-------HHHHHHHHHEEEEEEEEEEEEEE
T ss_pred -cceEEEEeh------hh-------hhCCHHHHH-------HHHHHHHHHcCCCcEEEEEEEEe
Confidence 358888621 11 223444443 45999999999999999876543
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=97.74 E-value=4.8e-05 Score=68.95 Aligned_cols=109 Identities=20% Similarity=0.219 Sum_probs=64.6
Q ss_pred CCeEEEeCCccchHHHH----HHHHcC---CCcEEEEEcCChHHHHHHHHHH--------------HH----cCCC----
Q 009708 336 GQSIVDCCAAPGGKTLY----MASCLS---GQGLVYAIDINKGRLRILNETA--------------KL----HQVN---- 386 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~----la~~~~---~~~~v~avD~s~~~l~~~~~n~--------------~~----~g~~---- 386 (528)
.-+||++|||+|--.-. +.+... ..-+|+|.|+|+..++.|++.. .+ .+..
T Consensus 25 ~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~~~ 104 (193)
T d1af7a2 25 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGL 104 (193)
T ss_dssp CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSE
T ss_pred CeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCccce
Confidence 34899999999985433 333222 1247999999999999887421 11 1100
Q ss_pred --------ccEEEEcCccccccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCC
Q 009708 387 --------SVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPG 458 (528)
Q Consensus 387 --------~~i~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpG 458 (528)
..+.+...+.........+.||+|+| -+ ++. ..+ .+.|.++++.....|+||
T Consensus 105 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~C----RN--VLi-------Yf~-------~~~~~~vl~~l~~~L~pG 164 (193)
T d1af7a2 105 VRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFC----RN--VMI-------YFD-------KTTQEDILRRFVPLLKPD 164 (193)
T ss_dssp EEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEE----CS--SGG-------GSC-------HHHHHHHHHHHGGGEEEE
T ss_pred eehHHHHHHHHHHhhhhccccccCCCCCccEEEe----eh--hHH-------hcC-------HHHHHHHHHHHHHHhCCC
Confidence 01222223332222122467999996 22 111 111 134677899999999999
Q ss_pred CEEEEE
Q 009708 459 GVLVYS 464 (528)
Q Consensus 459 G~Lvys 464 (528)
|+|+..
T Consensus 165 G~L~lG 170 (193)
T d1af7a2 165 GLLFAG 170 (193)
T ss_dssp EEEEEC
T ss_pred cEEEEe
Confidence 999854
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=97.74 E-value=9e-06 Score=76.13 Aligned_cols=145 Identities=13% Similarity=0.137 Sum_probs=86.4
Q ss_pred cceeEeecchHHH-HHHhcC-CCCCCeEEEeCCccchHHHHHHHHc---CCCcEEEEEcCChHHHHHHHHHHHHcCCCcc
Q 009708 314 EGLCAVQDESAGL-VVAVVD-PQPGQSIVDCCAAPGGKTLYMASCL---SGQGLVYAIDINKGRLRILNETAKLHQVNSV 388 (528)
Q Consensus 314 ~G~~~~Qd~~s~l-~~~~l~-~~~g~~VLDl~aG~G~kt~~la~~~---~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~ 388 (528)
.|.-.+|.+.-.. ..+++. .+ ..+||++|++.|+-++.++..+ +..++|+++|+++.+..... ... .+
T Consensus 58 ~G~p~~k~p~d~~~~~eli~~~K-Pk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~-----~~~-~~ 130 (232)
T d2bm8a1 58 RGLRMLKDPDTQAVYHDMLWELR-PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA-----SDM-EN 130 (232)
T ss_dssp TTEECCSCHHHHHHHHHHHHHHC-CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG-----GGC-TT
T ss_pred cceecccCHHHHHHHHHHHHHhC-CCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhh-----ccc-cc
Confidence 5777777654322 222322 23 3489999999999998887654 45789999999876543221 112 35
Q ss_pred EEEEcCccccccc--c-CCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 389 IRTIHADLRTFAD--N-STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 389 i~~~~~D~~~~~~--~-~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
++++.+|..+... . ....+|.|++|.--+. ... + .+ +. ...+|++||++|+-.
T Consensus 131 I~~i~gDs~~~~~~~~l~~~~~dlIfID~~H~~----------------~~v--~----~~-~~-~~~lLk~GG~iIveD 186 (232)
T d2bm8a1 131 ITLHQGDCSDLTTFEHLREMAHPLIFIDNAHAN----------------TFN--I----MK-WA-VDHLLEEGDYFIIED 186 (232)
T ss_dssp EEEEECCSSCSGGGGGGSSSCSSEEEEESSCSS----------------HHH--H----HH-HH-HHHTCCTTCEEEECS
T ss_pred eeeeecccccHHHHHHHHhcCCCEEEEcCCcch----------------HHH--H----HH-HH-HhcccCcCCEEEEEc
Confidence 9999999765322 1 1346899999964321 111 1 11 22 357999999988743
Q ss_pred -CCCCchhhHHHHHHHHhhCC-CceE
Q 009708 466 -CSIDPEENEERVEAFLLRHP-EFSI 489 (528)
Q Consensus 466 -cs~~~~Ene~~v~~~l~~~~-~~~~ 489 (528)
++.....+++-+.+++.... .++.
T Consensus 187 ~i~~~~~~~~~~~~e~~~~~~~~~~~ 212 (232)
T d2bm8a1 187 MIPYWYRYAPQLFSEYLGAFRDVLSM 212 (232)
T ss_dssp CHHHHHHHCHHHHHHHHHTTTTTEEE
T ss_pred CCccccccCchHHHHHHhhhccEEEe
Confidence 22233333444445555443 3444
|
| >d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase AviRa domain: rRNA methyltransferase AviRa species: Streptomyces viridochromogenes [TaxId: 1938]
Probab=97.63 E-value=1.6e-05 Score=75.01 Aligned_cols=82 Identities=15% Similarity=-0.001 Sum_probs=64.8
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCC---------------------------------------CcEEEEEcCChHHHHH
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSG---------------------------------------QGLVYAIDINKGRLRI 375 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~---------------------------------------~~~v~avD~s~~~l~~ 375 (528)
.+..++|.|||+|.+.+.+|....+ ...++|.|+++.+++.
T Consensus 50 ~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~~ 129 (249)
T d1o9ga_ 50 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA 129 (249)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred CCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHHH
Confidence 3457999999999999987764210 1257899999999998
Q ss_pred H---HHHHHHcCCCccEEEEcCcccccccc----CCCCCCEEEEcCCC
Q 009708 376 L---NETAKLHQVNSVIRTIHADLRTFADN----STVKCDKVLLDAPC 416 (528)
Q Consensus 376 ~---~~n~~~~g~~~~i~~~~~D~~~~~~~----~~~~fD~Vl~D~Pc 416 (528)
+ ++|+++.|+...|.+.+.|+++..+. .+...++|++|||+
T Consensus 130 A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPY 177 (249)
T d1o9ga_ 130 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPY 177 (249)
T ss_dssp HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCG
T ss_pred HHHHHHHHHHcCCCceeeeeecchhccCcchhccCCCCCCEEEeCCCc
Confidence 8 56999999998899999998765431 24567999999999
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=97.50 E-value=6.8e-05 Score=66.73 Aligned_cols=105 Identities=18% Similarity=0.226 Sum_probs=69.4
Q ss_pred HHHhcCCCCCCeEEEeCCcc-chHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccc-ccc-C
Q 009708 327 VVAVVDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF-ADN-S 403 (528)
Q Consensus 327 ~~~~l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~-~~~-~ 403 (528)
.+...++++|++||=+|||+ |..++++++.+ +..+|+++|.++.+++.++ .+|.+..+.....+..+. ... .
T Consensus 19 a~~~a~~~~g~~VlI~GaG~vGl~~~q~ak~~-Ga~~Vi~~d~~~~r~~~a~----~lGa~~~i~~~~~~~~~~v~~~t~ 93 (174)
T d1jqba2 19 GAELADIEMGSSVVVIGIGAVGLMGIAGAKLR-GAGRIIGVGSRPICVEAAK----FYGATDILNYKNGHIEDQVMKLTN 93 (174)
T ss_dssp HHHHTTCCTTCCEEEECCSHHHHHHHHHHHTT-TCSCEEEECCCHHHHHHHH----HHTCSEEECGGGSCHHHHHHHHTT
T ss_pred HHHHhCCCCCCEEEEEcCCcchhhhhhhhhcc-cccccccccchhhhHHHHH----hhCccccccccchhHHHHHHHHhh
Confidence 34567889999999999998 67778888764 3457999999999998875 467653221111111111 111 1
Q ss_pred CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 404 ~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
...||+||- |+|.. ..++.++++++|+|+++..
T Consensus 94 g~G~D~vid---~~g~~-------------------------~~~~~a~~~~~~~G~iv~~ 126 (174)
T d1jqba2 94 GKGVDRVIM---AGGGS-------------------------ETLSQAVKMVKPGGIISNI 126 (174)
T ss_dssp TSCEEEEEE---CSSCT-------------------------THHHHHHHHEEEEEEEEEC
T ss_pred ccCcceEEE---ccCCH-------------------------HHHHHHHHHHhcCCEEEEE
Confidence 345998875 33211 1378889999999999853
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.48 E-value=0.0002 Score=67.18 Aligned_cols=98 Identities=17% Similarity=0.112 Sum_probs=70.8
Q ss_pred CCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAP 415 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~P 415 (528)
..+|||+|+|+|..+..+++.. +..+++..|.. .. ++..+..++++++.+|+.+.. ..+|++++--
T Consensus 81 ~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dlp-~v-------i~~~~~~~rv~~~~gD~f~~~----p~aD~~~l~~- 146 (244)
T d1fp2a2 81 LESIVDVGGGTGTTAKIICETF-PKLKCIVFDRP-QV-------VENLSGSNNLTYVGGDMFTSI----PNADAVLLKY- 146 (244)
T ss_dssp CSEEEEETCTTSHHHHHHHHHC-TTCEEEEEECH-HH-------HTTCCCBTTEEEEECCTTTCC----CCCSEEEEES-
T ss_pred ceEEEEecCCccHHHHHHHHhC-CCCeEEEecCH-HH-------HHhCcccCceEEEecCcccCC----CCCcEEEEEe-
Confidence 3589999999999999999984 56799999983 33 334566678999999987632 3579988621
Q ss_pred CCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCC---CEEEEEcC
Q 009708 416 CSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPG---GVLVYSTC 466 (528)
Q Consensus 416 csg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpG---G~LvysTc 466 (528)
+.+.++.++. .++|+++.+.|+|| |++++..-
T Consensus 147 ------------vLHdw~d~~~-------~~iL~~~~~al~pgg~~~~lli~e~ 181 (244)
T d1fp2a2 147 ------------ILHNWTDKDC-------LRILKKCKEAVTNDGKRGKVTIIDM 181 (244)
T ss_dssp ------------CGGGSCHHHH-------HHHHHHHHHHHSGGGCCCEEEEEEC
T ss_pred ------------ecccCChHHH-------HHHHHHHHHHcCcccCCcEEEEEEe
Confidence 1122344444 34599999999998 77776543
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.46 E-value=0.00028 Score=62.11 Aligned_cols=106 Identities=21% Similarity=0.292 Sum_probs=69.7
Q ss_pred HHhcCCCCCCeEEEeCCccchHH-HHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccc----cc
Q 009708 328 VAVVDPQPGQSIVDCCAAPGGKT-LYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA----DN 402 (528)
Q Consensus 328 ~~~l~~~~g~~VLDl~aG~G~kt-~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~----~~ 402 (528)
....++++|++||=+|||+.|.. .+++.. .+..+|+++|.++.+++.++ ++|.+..+..-..|..... ..
T Consensus 19 ~~~~~~~~gd~VlI~G~G~iG~~~~~~a~~-~G~~~Vi~~d~~~~rl~~a~----~~Ga~~~~~~~~~~~~~~~~~~~~~ 93 (171)
T d1pl8a2 19 CRRGGVTLGHKVLVCGAGPIGMVTLLVAKA-MGAAQVVVTDLSATRLSKAK----EIGADLVLQISKESPQEIARKVEGQ 93 (171)
T ss_dssp HHHHTCCTTCEEEEECCSHHHHHHHHHHHH-TTCSEEEEEESCHHHHHHHH----HTTCSEEEECSSCCHHHHHHHHHHH
T ss_pred HHHhCCCCCCEEEEECCCccHHHHHHHHHH-cCCceEEeccCCHHHHHHHH----HhCCccccccccccccccccccccc
Confidence 34567899999999999987754 455555 34558999999999998765 4577642221112221111 11
Q ss_pred CCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcC
Q 009708 403 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466 (528)
Q Consensus 403 ~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTc 466 (528)
.+..+|+|+- |+|. ...++.+.+++++||++++...
T Consensus 94 ~g~g~Dvvid---~~G~-------------------------~~~~~~a~~~~~~gG~iv~~G~ 129 (171)
T d1pl8a2 94 LGCKPEVTIE---CTGA-------------------------EASIQAGIYATRSGGTLVLVGL 129 (171)
T ss_dssp HTSCCSEEEE---CSCC-------------------------HHHHHHHHHHSCTTCEEEECSC
T ss_pred CCCCceEEEe---ccCC-------------------------chhHHHHHHHhcCCCEEEEEec
Confidence 2457998875 4331 1247889999999999997554
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=97.44 E-value=9.6e-05 Score=65.94 Aligned_cols=104 Identities=18% Similarity=0.176 Sum_probs=69.0
Q ss_pred HhcCCCCCCeEEEeCCcc-chHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccc-----c
Q 009708 329 AVVDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-----N 402 (528)
Q Consensus 329 ~~l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~-----~ 402 (528)
....+++|++||-.|||+ |..++++|+.++ ..+|+++|.++.+++.++ ++|.+..+.....|..+... .
T Consensus 22 ~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~G-a~~Vi~~~~~~~~~~~a~----~lGa~~vi~~~~~~~~~~~~~i~~~~ 96 (182)
T d1vj0a2 22 EYPESFAGKTVVIQGAGPLGLFGVVIARSLG-AENVIVIAGSPNRLKLAE----EIGADLTLNRRETSVEERRKAIMDIT 96 (182)
T ss_dssp TCSSCCBTCEEEEECCSHHHHHHHHHHHHTT-BSEEEEEESCHHHHHHHH----HTTCSEEEETTTSCHHHHHHHHHHHT
T ss_pred HHhCCCCCCEEEEECCCccchhheecccccc-cccccccccccccccccc----cccceEEEeccccchHHHHHHHHHhh
Confidence 445678999999999986 667778888753 348999999999998765 45765422222223222211 1
Q ss_pred CCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 403 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 403 ~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
....||+||- |+|... .++.+.+++++||++++.-
T Consensus 97 ~~~g~Dvvid---~vG~~~-------------------------~~~~a~~~l~~~G~iv~~G 131 (182)
T d1vj0a2 97 HGRGADFILE---ATGDSR-------------------------ALLEGSELLRRGGFYSVAG 131 (182)
T ss_dssp TTSCEEEEEE---CSSCTT-------------------------HHHHHHHHEEEEEEEEECC
T ss_pred CCCCceEEee---cCCchh-------------------------HHHHHHHHhcCCCEEEEEe
Confidence 1346998874 433211 3778899999999998654
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.42 E-value=0.00035 Score=65.40 Aligned_cols=101 Identities=14% Similarity=0.115 Sum_probs=69.9
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDA 414 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~ 414 (528)
...+|||+|||+|..+..+++.. ++.+++.+|+.+. + +......+++++.+|+++..+ ..|.+++-
T Consensus 81 ~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dlp~v-i-------~~~~~~~r~~~~~~d~~~~~P----~ad~~~l~- 146 (243)
T d1kyza2 81 GLKSLVDVGGGTGAVINTIVSKY-PTIKGINFDLPHV-I-------EDAPSYPGVEHVGGDMFVSIP----KADAVFMK- 146 (243)
T ss_dssp SCSEEEEETCTTSHHHHHHHHHC-TTSEEEEEECTTT-T-------TTCCCCTTEEEEECCTTTCCC----CCSCEECS-
T ss_pred CCcEEEEecCCCcHHHHHHHHHC-CCCeEEEcccHHh-h-------hhcccCCceEEecccccccCC----CcceEEEE-
Confidence 34689999999999999999985 5789999998643 2 333445679999999875332 24544431
Q ss_pred CCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCC
Q 009708 415 PCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 468 (528)
Q Consensus 415 Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~ 468 (528)
.++.. ++.++. ..+|+++.+.|+|||++++..+.+
T Consensus 147 -----~vlh~-------~~d~~~-------~~iL~~~~~al~pgg~~li~d~~~ 181 (243)
T d1kyza2 147 -----WICHD-------WSDEHC-------LKFLKNCYEALPDNGKVIVAECIL 181 (243)
T ss_dssp -----SSSTT-------SCHHHH-------HHHHHHHHHHCCSSSCEEEEECEE
T ss_pred -----EEeec-------CCHHHH-------HHHHHHHHHhcCCCceEEEEEEEe
Confidence 11211 233333 346999999999999988876654
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.28 E-value=0.00031 Score=61.65 Aligned_cols=101 Identities=12% Similarity=0.103 Sum_probs=66.0
Q ss_pred hcCCCCCCeEEEeCCcc-chHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCC
Q 009708 330 VVDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCD 408 (528)
Q Consensus 330 ~l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD 408 (528)
..++++|++||-+|+|+ |..++++++.+ +.+|+++|.++.+++.++ ++|.+..+ ...+-.+......+.||
T Consensus 22 ~~~~~~g~~vlI~GaG~vG~~a~q~ak~~--G~~vi~~~~~~~k~~~a~----~lGa~~~i--~~~~~~~~~~~~~~~~d 93 (168)
T d1piwa2 22 RNGCGPGKKVGIVGLGGIGSMGTLISKAM--GAETYVISRSSRKREDAM----KMGADHYI--ATLEEGDWGEKYFDTFD 93 (168)
T ss_dssp HTTCSTTCEEEEECCSHHHHHHHHHHHHH--TCEEEEEESSSTTHHHHH----HHTCSEEE--EGGGTSCHHHHSCSCEE
T ss_pred HhCcCCCCEEEEECCCCcchhHHHHhhhc--cccccccccchhHHHHhh----ccCCcEEe--eccchHHHHHhhhcccc
Confidence 45788999999999984 45666777765 368999999999998765 46866422 12222222222346799
Q ss_pred EEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 409 KVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 409 ~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
.|+. |.+.+.- . .+..+.+++++||+++..
T Consensus 94 ~vi~---~~~~~~~---~--------------------~~~~~~~~l~~~G~iv~~ 123 (168)
T d1piwa2 94 LIVV---CASSLTD---I--------------------DFNIMPKAMKVGGRIVSI 123 (168)
T ss_dssp EEEE---CCSCSTT---C--------------------CTTTGGGGEEEEEEEEEC
T ss_pred eEEE---EecCCcc---c--------------------hHHHHHHHhhccceEEEe
Confidence 8875 3332210 0 034578899999999864
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=97.25 E-value=0.00045 Score=61.24 Aligned_cols=103 Identities=18% Similarity=0.171 Sum_probs=69.9
Q ss_pred HhcCCCCCCeEEEeCCcc-chHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccc--ccc-ccCC
Q 009708 329 AVVDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR--TFA-DNST 404 (528)
Q Consensus 329 ~~l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~--~~~-~~~~ 404 (528)
...++++|++||=+|||+ |..++++++.+ +...|+++|.++.+++.++ ++|.+..+.....|.. ... ....
T Consensus 22 ~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~-Ga~~Vi~~d~~~~r~~~a~----~~Ga~~~i~~~~~~~~~~~~~~~~~~ 96 (174)
T d1e3ia2 22 NTAKVTPGSTCAVFGLGCVGLSAIIGCKIA-GASRIIAIDINGEKFPKAK----ALGATDCLNPRELDKPVQDVITELTA 96 (174)
T ss_dssp TTSCCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHH----HTTCSEEECGGGCSSCHHHHHHHHHT
T ss_pred HhhCCCCCCEEEEECCChHHHHHHHHHHHh-CCceeeeeccchHHHHHHH----HhCCCcccCCccchhhhhhhHhhhhc
Confidence 456789999999999999 66777777765 4568999999999986654 5677642221122211 111 1124
Q ss_pred CCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCC-CEEEEE
Q 009708 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPG-GVLVYS 464 (528)
Q Consensus 405 ~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpG-G~Lvys 464 (528)
..+|+||- |+|.. ..+..+++.+++| |+++..
T Consensus 97 ~G~d~vie---~~G~~-------------------------~~~~~a~~~~~~g~G~~v~v 129 (174)
T d1e3ia2 97 GGVDYSLD---CAGTA-------------------------QTLKAAVDCTVLGWGSCTVV 129 (174)
T ss_dssp SCBSEEEE---SSCCH-------------------------HHHHHHHHTBCTTTCEEEEC
T ss_pred CCCcEEEE---ecccc-------------------------hHHHHHHHHhhcCCeEEEec
Confidence 67999975 55422 2488899999996 999864
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=97.24 E-value=0.00028 Score=63.80 Aligned_cols=115 Identities=17% Similarity=0.137 Sum_probs=70.1
Q ss_pred HHhcCCCCCCeEEEeCCccch-HHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcC---ccccccc--
Q 009708 328 VAVVDPQPGQSIVDCCAAPGG-KTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA---DLRTFAD-- 401 (528)
Q Consensus 328 ~~~l~~~~g~~VLDl~aG~G~-kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~---D~~~~~~-- 401 (528)
+...++++|++||-+|||+.| .++.+|+.+ +..+|+++|.++.+++.++ ++|.+. ++.. |......
T Consensus 18 ~~~a~v~~G~tVlV~GaG~vGl~a~~~ak~~-ga~~Vi~~d~~~~rl~~a~----~~Ga~~---~~~~~~~~~~~~i~~~ 89 (195)
T d1kola2 18 AVTAGVGPGSTVYVAGAGPVGLAAAASARLL-GAAVVIVGDLNPARLAHAK----AQGFEI---ADLSLDTPLHEQIAAL 89 (195)
T ss_dssp HHHTTCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHH----HTTCEE---EETTSSSCHHHHHHHH
T ss_pred HHHhCCCCCCEEEEECcCHHHHHHHHHHHhh-cccceeeecccchhhHhhh----hccccE---EEeCCCcCHHHHHHHH
Confidence 456788999999999999955 666777654 4679999999999998765 456542 2222 2211111
Q ss_pred cCCCCCCEEEEcC--CCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 402 NSTVKCDKVLLDA--PCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 402 ~~~~~fD~Vl~D~--Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
.....+|.++-.. |+.+.... ...... . .+.++.+.+.++|||++++.-
T Consensus 90 t~g~g~D~vid~vG~~~~~~~~~-----~~~~~~---~-------~~~l~~~~~~~r~gG~v~~~G 140 (195)
T d1kola2 90 LGEPEVDCAVDAVGFEARGHGHE-----GAKHEA---P-------ATVLNSLMQVTRVAGKIGIPG 140 (195)
T ss_dssp HSSSCEEEEEECCCTTCBCSSTT-----GGGSBC---T-------THHHHHHHHHEEEEEEEEECS
T ss_pred hCCCCcEEEEECccccccCCccc-----ceeecC---c-------HHHHHHHHHHHhcCCEEEEee
Confidence 1134689887421 22111110 000000 0 124888999999999998653
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=97.21 E-value=0.00074 Score=64.88 Aligned_cols=79 Identities=16% Similarity=0.356 Sum_probs=61.2
Q ss_pred eEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcCCCC
Q 009708 338 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCS 417 (528)
Q Consensus 338 ~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~Pcs 417 (528)
+|||++||.||.++-+-+. +--.+.++|+++.+.+..+.|. ++ .++++|+.++....-..+|+++.-|||.
T Consensus 2 k~~~lF~G~Gg~~~gl~~a--G~~~~~a~e~d~~a~~~~~~N~-----~~--~~~~~Di~~~~~~~~~~~dll~~g~PCq 72 (324)
T d1dcta_ 2 NLISLFSGAGGLDLGFQKA--GFRIICANEYDKSIWKTYESNH-----SA--KLIKGDISKISSDEFPKCDGIIGGPPCQ 72 (324)
T ss_dssp EEEEESCSSCHHHHHHHHH--TCEEEEEEECCHHHHHHHHHHC-----CS--EEEESCTTTSCGGGSCCCSEEEECCCCT
T ss_pred eEEEeCcCcCHHHHHHHHC--CCEEEEEEeCCHHHHHHHHHHC-----CC--CCccCChhhCCHhHcccccEEeeccccc
Confidence 6999999999998876553 2335679999999999888774 33 4577899887655445799999999998
Q ss_pred CCccccCC
Q 009708 418 GLGVLSKR 425 (528)
Q Consensus 418 g~G~~~~~ 425 (528)
+....++.
T Consensus 73 ~fS~ag~~ 80 (324)
T d1dcta_ 73 SWSEGGSL 80 (324)
T ss_dssp TTSSSSCC
T ss_pred cccccccc
Confidence 87665543
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=97.17 E-value=0.00026 Score=62.64 Aligned_cols=105 Identities=19% Similarity=0.206 Sum_probs=68.7
Q ss_pred HHhcCCCCCCeEEEeCCccch-HHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccc-cCCC
Q 009708 328 VAVVDPQPGQSIVDCCAAPGG-KTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NSTV 405 (528)
Q Consensus 328 ~~~l~~~~g~~VLDl~aG~G~-kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~-~~~~ 405 (528)
...++++||++||=+|||+-| .++++++.++ ...|+++|.++.+++.+++ +|.+..+..-..|..+... ..++
T Consensus 21 ~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g-~~~v~~~~~~~~k~~~a~~----~Ga~~~i~~~~~~~~~~i~~~t~g 95 (174)
T d1f8fa2 21 INALKVTPASSFVTWGAGAVGLSALLAAKVCG-ASIIIAVDIVESRLELAKQ----LGATHVINSKTQDPVAAIKEITDG 95 (174)
T ss_dssp HTTTCCCTTCEEEEESCSHHHHHHHHHHHHHT-CSEEEEEESCHHHHHHHHH----HTCSEEEETTTSCHHHHHHHHTTS
T ss_pred HHhhCCCCCCEEEEeCCCHHHhhhhhcccccc-cceeeeeccHHHHHHHHHH----cCCeEEEeCCCcCHHHHHHHHcCC
Confidence 345678999999999998766 4456666543 5688999999999988764 5765422111122222111 1235
Q ss_pred CCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 406 ~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
.||.|+- |+|.. ..++.+.++++|+|++++..
T Consensus 96 g~D~vid---~~G~~-------------------------~~~~~~~~~~~~~G~i~~~G 127 (174)
T d1f8fa2 96 GVNFALE---STGSP-------------------------EILKQGVDALGILGKIAVVG 127 (174)
T ss_dssp CEEEEEE---CSCCH-------------------------HHHHHHHHTEEEEEEEEECC
T ss_pred CCcEEEE---cCCcH-------------------------HHHHHHHhcccCceEEEEEe
Confidence 7998885 44422 24778899999999998643
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=97.15 E-value=0.00061 Score=65.99 Aligned_cols=81 Identities=21% Similarity=0.365 Sum_probs=62.4
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDA 414 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~ 414 (528)
.+-+|||++||.||.++.+-+. +--.|.|+|+++.+++..+.|.. + ..++|+.++.......+|+|+.-|
T Consensus 10 ~~lrv~~lFsG~Gg~~~gl~~a--G~~~v~a~e~d~~a~~~~~~N~~-----~---~~~~Di~~~~~~~~~~~Dll~ggp 79 (327)
T d2c7pa1 10 TGLRFIDLFAGLGGFRLALESC--GAECVYSNEWDKYAQEVYEMNFG-----E---KPEGDITQVNEKTIPDHDILCAGF 79 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHHT--TCEEEEEECCCHHHHHHHHHHHS-----C---CCBSCGGGSCGGGSCCCSEEEEEC
T ss_pred CCCeEEEECccccHHHHHHHHC--CCeEEEEEeCCHHHHHHHHHHCC-----C---CCcCchhcCchhhcceeeeeeccc
Confidence 4679999999999999887553 23357789999999999998862 2 236888887655445799999999
Q ss_pred CCCCCccccCC
Q 009708 415 PCSGLGVLSKR 425 (528)
Q Consensus 415 Pcsg~G~~~~~ 425 (528)
||.+....++.
T Consensus 80 PCq~fS~ag~~ 90 (327)
T d2c7pa1 80 PCQAFSISGKQ 90 (327)
T ss_dssp CCTTTCTTSCC
T ss_pred ccchhhhhhhh
Confidence 99877665543
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=96.94 E-value=0.0043 Score=53.90 Aligned_cols=103 Identities=15% Similarity=0.201 Sum_probs=67.8
Q ss_pred HhcCCCCCCeEEEeCCcc-chHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccc----c----c
Q 009708 329 AVVDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR----T----F 399 (528)
Q Consensus 329 ~~l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~----~----~ 399 (528)
...++++|++||-+|||+ |..++++++.+ +.+|+++|.++.+++.+++ +|.+. .+...+.. . +
T Consensus 20 ~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~--Ga~vi~v~~~~~r~~~a~~----~ga~~--~~~~~~~~~~~~~~~~~~ 91 (170)
T d1e3ja2 20 RRAGVQLGTTVLVIGAGPIGLVSVLAAKAY--GAFVVCTARSPRRLEVAKN----CGADV--TLVVDPAKEEESSIIERI 91 (170)
T ss_dssp HHHTCCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH----TTCSE--EEECCTTTSCHHHHHHHH
T ss_pred HHhCCCCCCEEEEEcccccchhhHhhHhhh--cccccccchHHHHHHHHHH----cCCcE--EEeccccccccchhhhhh
Confidence 445788999999999986 44556677664 3599999999999987765 46552 22221111 1 1
Q ss_pred cccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 400 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 400 ~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
....+..+|+|+- |+|. ...+..+.+++++||++++..+.
T Consensus 92 ~~~~g~g~D~vid---~~g~-------------------------~~~~~~a~~~~~~~G~iv~~G~~ 131 (170)
T d1e3ja2 92 RSAIGDLPNVTID---CSGN-------------------------EKCITIGINITRTGGTLMLVGMG 131 (170)
T ss_dssp HHHSSSCCSEEEE---CSCC-------------------------HHHHHHHHHHSCTTCEEEECSCC
T ss_pred hcccccCCceeee---cCCC-------------------------hHHHHHHHHHHhcCCceEEEecC
Confidence 1112467998874 3331 12378889999999999976543
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.80 E-value=0.00071 Score=65.62 Aligned_cols=82 Identities=13% Similarity=0.245 Sum_probs=52.4
Q ss_pred CeEEEeCCccchHHHHHHHHcCCCcE-EEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC--CCCCCEEEEc
Q 009708 337 QSIVDCCAAPGGKTLYMASCLSGQGL-VYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS--TVKCDKVLLD 413 (528)
Q Consensus 337 ~~VLDl~aG~G~kt~~la~~~~~~~~-v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~--~~~fD~Vl~D 413 (528)
-+|+|+|||.||.++.+-.. +-..+ |.|+|+++.+++..+.|. ++ ..++++|+.++.... ...+|+++.-
T Consensus 3 ~kv~~lF~G~Gg~~~gl~~a-G~~~~~~~a~E~~~~a~~~~~~n~-----~~-~~~~~~di~~~~~~~~~~~~~Dll~gg 75 (343)
T d1g55a_ 3 LRVLELYSGVGGMHHALRES-CIPAQVVAAIDVNTVANEVYKYNF-----PH-TQLLAKTIEGITLEEFDRLSFDMILMS 75 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHH-TCSEEEEEEECCCHHHHHHHHHHC-----TT-SCEECSCGGGCCHHHHHHHCCSEEEEC
T ss_pred CEEEEcCcCccHHHHHHHHc-CCCCeEEEEEECCHHHHHHHHHHC-----CC-CCcccCchhhCCHhHcCCCCccEEEee
Confidence 37999999999998776443 21123 779999999999888773 22 346778887664322 2368999999
Q ss_pred CCCCCCccccCC
Q 009708 414 APCSGLGVLSKR 425 (528)
Q Consensus 414 ~Pcsg~G~~~~~ 425 (528)
|||.+..+.++.
T Consensus 76 pPCq~fS~ag~~ 87 (343)
T d1g55a_ 76 PPCQPFTRIGRQ 87 (343)
T ss_dssp CC----------
T ss_pred cccccccccccc
Confidence 999887765543
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.80 E-value=0.00057 Score=60.20 Aligned_cols=102 Identities=12% Similarity=0.060 Sum_probs=66.4
Q ss_pred HHhcCCCCCCeEEEeCC--ccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccc--cC
Q 009708 328 VAVVDPQPGQSIVDCCA--APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD--NS 403 (528)
Q Consensus 328 ~~~l~~~~g~~VLDl~a--G~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~--~~ 403 (528)
....++++|++||-.|+ |.|..++++|+.+ +.+|++++.++++++.++ .+|.+..+.....|..+... ..
T Consensus 21 ~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~--G~~vi~~~~~~~~~~~~~----~~Ga~~vi~~~~~~~~~~i~~~t~ 94 (174)
T d1yb5a2 21 IHSACVKAGESVLVHGASGGVGLAACQIARAY--GLKILGTAGTEEGQKIVL----QNGAHEVFNHREVNYIDKIKKYVG 94 (174)
T ss_dssp HTTSCCCTTCEEEEETCSSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHH----HTTCSEEEETTSTTHHHHHHHHHC
T ss_pred HHHhCCCCCCEEEEEecccccccccccccccc--Cccccccccccccccccc----ccCcccccccccccHHHHhhhhhc
Confidence 34557889999999996 4566777888875 368999998988877654 57877532211222222111 12
Q ss_pred CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 404 ~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
...||+|+- |.| + ..++.+++.|+|+|++|..
T Consensus 95 ~~g~d~v~d---~~g-~-------------------------~~~~~~~~~l~~~G~iv~~ 126 (174)
T d1yb5a2 95 EKGIDIIIE---MLA-N-------------------------VNLSKDLSLLSHGGRVIVV 126 (174)
T ss_dssp TTCEEEEEE---SCH-H-------------------------HHHHHHHHHEEEEEEEEEC
T ss_pred cCCceEEee---ccc-H-------------------------HHHHHHHhccCCCCEEEEE
Confidence 456898774 322 1 1377788999999999854
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.75 E-value=0.0016 Score=56.62 Aligned_cols=103 Identities=17% Similarity=0.165 Sum_probs=64.5
Q ss_pred HhcCCCCCCeEEEeCCccch-HHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCC
Q 009708 329 AVVDPQPGQSIVDCCAAPGG-KTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC 407 (528)
Q Consensus 329 ~~l~~~~g~~VLDl~aG~G~-kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~f 407 (528)
...++++|++||=+|||+=| .++++++.+ +.+|+++|.++.+++.++ .+|.+..+.....|..+........+
T Consensus 21 ~~~~~~~g~~VlV~GaG~vG~~~~~~ak~~--G~~Vi~~~~~~~~~~~a~----~~Ga~~~i~~~~~~~~~~~~~~~~g~ 94 (166)
T d1llua2 21 KQTNARPGQWVAISGIGGLGHVAVQYARAM--GLHVAAIDIDDAKLELAR----KLGASLTVNARQEDPVEAIQRDIGGA 94 (166)
T ss_dssp HHHTCCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHH----HTTCSEEEETTTSCHHHHHHHHHSSE
T ss_pred HHhCCCCCCEEEEeeccccHHHHHHHHHHc--CCccceecchhhHHHhhh----ccCccccccccchhHHHHHHHhhcCC
Confidence 44678999999999998754 445666664 369999999999997764 56776422211122211111111335
Q ss_pred CEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 408 DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 408 D~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
|.++.+ ++.+ ..+..+.++|++||+++...
T Consensus 95 ~~~i~~---~~~~-------------------------~~~~~~~~~l~~~G~iv~~G 124 (166)
T d1llua2 95 HGVLVT---AVSN-------------------------SAFGQAIGMARRGGTIALVG 124 (166)
T ss_dssp EEEEEC---CSCH-------------------------HHHHHHHTTEEEEEEEEECC
T ss_pred cccccc---cccc-------------------------hHHHHHHHHhcCCcEEEEEE
Confidence 555543 2211 13778899999999998654
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.74 E-value=0.0014 Score=56.90 Aligned_cols=104 Identities=17% Similarity=0.210 Sum_probs=65.6
Q ss_pred HhcCCCCCCeEEEeCCccchHH-HHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCC
Q 009708 329 AVVDPQPGQSIVDCCAAPGGKT-LYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC 407 (528)
Q Consensus 329 ~~l~~~~g~~VLDl~aG~G~kt-~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~f 407 (528)
...+++||++||=.|||+-|.. +.++.. . +.+|+++|.++.+++.++ .+|.+..+.....|...........+
T Consensus 21 ~~~~~~~g~~vlv~G~G~iG~~a~~~a~~-~-g~~v~~~~~~~~r~~~~k----~~Ga~~~~~~~~~~~~~~~~~~~~~~ 94 (168)
T d1rjwa2 21 KVTGAKPGEWVAIYGIGGLGHVAVQYAKA-M-GLNVVAVDIGDEKLELAK----ELGADLVVNPLKEDAAKFMKEKVGGV 94 (168)
T ss_dssp HHHTCCTTCEEEEECCSTTHHHHHHHHHH-T-TCEEEEECSCHHHHHHHH----HTTCSEEECTTTSCHHHHHHHHHSSE
T ss_pred HHhCCCCCCEEEEeecccchhhhhHHHhc-C-CCeEeccCCCHHHhhhhh----hcCcceecccccchhhhhcccccCCC
Confidence 3457889999999999987655 444444 3 458999999999987764 46776422111122222111112345
Q ss_pred CEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcC
Q 009708 408 DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466 (528)
Q Consensus 408 D~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTc 466 (528)
|.++.|+.- ...+..+.+.+++||++++.-+
T Consensus 95 ~~~v~~~~~----------------------------~~~~~~a~~~l~~~G~i~~~g~ 125 (168)
T d1rjwa2 95 HAAVVTAVS----------------------------KPAFQSAYNSIRRGGACVLVGL 125 (168)
T ss_dssp EEEEESSCC----------------------------HHHHHHHHHHEEEEEEEEECCC
T ss_pred ceEEeecCC----------------------------HHHHHHHHHHhccCCceEeccc
Confidence 666665432 1237889999999999987543
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.62 E-value=0.0017 Score=63.09 Aligned_cols=71 Identities=10% Similarity=0.111 Sum_probs=54.7
Q ss_pred HHHHHHhcCCC------CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccc
Q 009708 324 AGLVVAVVDPQ------PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 397 (528)
Q Consensus 324 s~l~~~~l~~~------~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~ 397 (528)
..-+++.+++. .++.|||+|.|+|..|..+....+ ..+|+++|+++..++.+++... .++++++++|+.
T Consensus 26 ~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~-~~~v~~iE~D~~~~~~L~~~~~----~~~~~ii~~D~l 100 (322)
T d1i4wa_ 26 YNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYC-PRQYSLLEKRSSLYKFLNAKFE----GSPLQILKRDPY 100 (322)
T ss_dssp HHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHC-CSEEEEECCCHHHHHHHHHHTT----TSSCEEECSCTT
T ss_pred HHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHhcc----CCCcEEEeCchh
Confidence 44455555533 467899999999999999987632 3589999999999999987653 234889999998
Q ss_pred cc
Q 009708 398 TF 399 (528)
Q Consensus 398 ~~ 399 (528)
.+
T Consensus 101 ~~ 102 (322)
T d1i4wa_ 101 DW 102 (322)
T ss_dssp CH
T ss_pred hc
Confidence 65
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=96.60 E-value=0.0013 Score=57.35 Aligned_cols=102 Identities=12% Similarity=0.135 Sum_probs=66.6
Q ss_pred HHHhcCCCCCCeEEEeCC-ccc-hHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccc---
Q 009708 327 VVAVVDPQPGQSIVDCCA-APG-GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD--- 401 (528)
Q Consensus 327 ~~~~l~~~~g~~VLDl~a-G~G-~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~--- 401 (528)
.....++++|++||=.|| |+. ..+++++..+ +...|+++|.++.+++.+++ +|.+. ++..+-.++..
T Consensus 19 al~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~-g~~~V~~~~~~~~~~~~~~~----~Ga~~---~i~~~~~~~~~~~~ 90 (170)
T d1jvba2 19 AVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAV-SGATIIGVDVREEAVEAAKR----AGADY---VINASMQDPLAEIR 90 (170)
T ss_dssp HHHHTTCCTTCEEEEETTTSHHHHHHHHHHHHH-TCCEEEEEESSHHHHHHHHH----HTCSE---EEETTTSCHHHHHH
T ss_pred HHHHhCCCCCCEEEEEeccccceeeeeeccccc-ccccccccccchhhHHHHHH----cCCce---eeccCCcCHHHHHH
Confidence 344567899999999996 544 4456666664 34689999999999888764 57653 22222222211
Q ss_pred --cCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 402 --NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 402 --~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
..+..||.|+- |+|.. ..++.+.++++|||+++..
T Consensus 91 ~~~~~~~~d~vid---~~g~~-------------------------~~~~~a~~~l~~~G~iv~~ 127 (170)
T d1jvba2 91 RITESKGVDAVID---LNNSE-------------------------KTLSVYPKALAKQGKYVMV 127 (170)
T ss_dssp HHTTTSCEEEEEE---SCCCH-------------------------HHHTTGGGGEEEEEEEEEC
T ss_pred HHhhcccchhhhc---ccccc-------------------------hHHHhhhhhcccCCEEEEe
Confidence 11456897775 43321 2367789999999998854
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=96.52 E-value=0.0024 Score=55.94 Aligned_cols=100 Identities=14% Similarity=0.192 Sum_probs=65.3
Q ss_pred CCCCCCeEEEeCCccchHH-HHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcc-cccccc-CCCCCC
Q 009708 332 DPQPGQSIVDCCAAPGGKT-LYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL-RTFADN-STVKCD 408 (528)
Q Consensus 332 ~~~~g~~VLDl~aG~G~kt-~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~-~~~~~~-~~~~fD 408 (528)
.++||++||=.|||+.|.. ++++..++ ...|+++|.++.+++.++ .+|.+..+. ...|. ...... ....+|
T Consensus 29 ~~~~g~~vli~GaG~vG~~~~~~a~~~g-~~~vv~~~~~~~k~~~~~----~~ga~~~i~-~~~~~~~~~~~~~~~~g~d 102 (172)
T d1h2ba2 29 TLYPGAYVAIVGVGGLGHIAVQLLKVMT-PATVIALDVKEEKLKLAE----RLGADHVVD-ARRDPVKQVMELTRGRGVN 102 (172)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHHC-CCEEEEEESSHHHHHHHH----HTTCSEEEE-TTSCHHHHHHHHTTTCCEE
T ss_pred ccCCCCEEEEeCCChHHHHHHHHHHhhc-CcccccccchhHHHHHHh----hcccceeec-CcccHHHHHHHhhCCCCce
Confidence 3678999999999887655 56666543 568999999999987766 456553221 11121 111111 235689
Q ss_pred EEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 409 KVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 409 ~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
.|+- |+|.. ..++.+.+.+++||+++..-
T Consensus 103 ~vid---~~g~~-------------------------~~~~~a~~~l~~~G~iv~~G 131 (172)
T d1h2ba2 103 VAMD---FVGSQ-------------------------ATVDYTPYLLGRMGRLIIVG 131 (172)
T ss_dssp EEEE---SSCCH-------------------------HHHHHGGGGEEEEEEEEECC
T ss_pred EEEE---ecCcc-------------------------hHHHHHHHHHhCCCEEEEEe
Confidence 8875 33311 13788999999999999644
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=96.50 E-value=0.0052 Score=53.93 Aligned_cols=80 Identities=10% Similarity=0.086 Sum_probs=52.5
Q ss_pred HHhcCCCCCCeEEEeCCccchHH-HHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccc--cc-cccC
Q 009708 328 VAVVDPQPGQSIVDCCAAPGGKT-LYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR--TF-ADNS 403 (528)
Q Consensus 328 ~~~l~~~~g~~VLDl~aG~G~kt-~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~--~~-~~~~ 403 (528)
....++++|++||=+|||+.|.. +++++.+ +..+|+++|.++++++.++ .+|.+..+.....|.. .. ....
T Consensus 20 ~~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~-G~~~Vi~~d~~~~kl~~a~----~lGa~~~i~~~~~d~~~~~~~~~~~ 94 (174)
T d1p0fa2 20 VNTAKVTPGSTCAVFGLGGVGFSAIVGCKAA-GASRIIGVGTHKDKFPKAI----ELGATECLNPKDYDKPIYEVICEKT 94 (174)
T ss_dssp HTTTCCCTTCEEEEECCSHHHHHHHHHHHHH-TCSEEEEECSCGGGHHHHH----HTTCSEEECGGGCSSCHHHHHHHHT
T ss_pred HHhhCCCCCCEEEEECCCchhHHHHHHHHHc-CCceeeccCChHHHHHHHH----HcCCcEEEcCCCchhHHHHHHHHhc
Confidence 34567899999999999987754 4566554 3578999999999998765 5787643222222311 11 1112
Q ss_pred CCCCCEEEE
Q 009708 404 TVKCDKVLL 412 (528)
Q Consensus 404 ~~~fD~Vl~ 412 (528)
...+|.|+-
T Consensus 95 ~~G~d~vid 103 (174)
T d1p0fa2 95 NGGVDYAVE 103 (174)
T ss_dssp TSCBSEEEE
T ss_pred CCCCcEEEE
Confidence 457999886
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=96.40 E-value=0.008 Score=52.81 Aligned_cols=79 Identities=13% Similarity=0.125 Sum_probs=51.2
Q ss_pred HhcCCCCCCeEEEeCCccchHH-HHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccc-c-ccc-cCC
Q 009708 329 AVVDPQPGQSIVDCCAAPGGKT-LYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR-T-FAD-NST 404 (528)
Q Consensus 329 ~~l~~~~g~~VLDl~aG~G~kt-~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~-~-~~~-~~~ 404 (528)
...++++|++|+=.|||+.|.. +++++. .+..+|+++|.++++++.+++ +|.+..+.....|.. . ... ...
T Consensus 23 ~~~~~~~g~tVlI~G~GgvGl~ai~~ak~-~G~~~Vi~vd~~~~kl~~Ak~----~GA~~~in~~~~~~~~~~~~~~~~g 97 (176)
T d1d1ta2 23 KTGKVKPGSTCVVFGLGGVGLSVIMGCKS-AGASRIIGIDLNKDKFEKAMA----VGATECISPKDSTKPISEVLSEMTG 97 (176)
T ss_dssp TTSCCCTTCEEEEECCSHHHHHHHHHHHH-TTCSEEEEECSCGGGHHHHHH----HTCSEEECGGGCSSCHHHHHHHHHT
T ss_pred HhhCCCCCCEEEEECCCchhHHHHHHHHH-cCCceEEEecCcHHHHHHHHh----cCCcEEECccccchHHHHHHHHhcc
Confidence 4456899999999999987754 455554 445799999999999987654 576642221122211 1 111 124
Q ss_pred CCCCEEEE
Q 009708 405 VKCDKVLL 412 (528)
Q Consensus 405 ~~fD~Vl~ 412 (528)
..+|.|+-
T Consensus 98 ~G~d~vi~ 105 (176)
T d1d1ta2 98 NNVGYTFE 105 (176)
T ss_dssp SCCCEEEE
T ss_pred ccceEEEE
Confidence 67998886
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=96.15 E-value=0.011 Score=51.33 Aligned_cols=100 Identities=13% Similarity=0.102 Sum_probs=66.0
Q ss_pred HhcCCCCCCeEEEeCCcc-chHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCC
Q 009708 329 AVVDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC 407 (528)
Q Consensus 329 ~~l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~f 407 (528)
...++++|++||=.|||+ |..++++|+.+ +.+++++|.++++++.++ ++|.+. ++..+-........+.+
T Consensus 24 ~~~~~~~G~~VlI~GaG~vG~~a~qlak~~--Ga~~i~~~~~~~~~~~a~----~lGad~---~i~~~~~~~~~~~~~~~ 94 (168)
T d1uufa2 24 RHWQAGPGKKVGVVGIGGLGHMGIKLAHAM--GAHVVAFTTSEAKREAAK----ALGADE---VVNSRNADEMAAHLKSF 94 (168)
T ss_dssp HHTTCCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSGGGHHHHH----HHTCSE---EEETTCHHHHHTTTTCE
T ss_pred HHhCCCCCCEEEEeccchHHHHHHHHhhcc--cccchhhccchhHHHHHh----ccCCcE---EEECchhhHHHHhcCCC
Confidence 456789999999999876 44666777764 357889999999887654 567764 22222222122223579
Q ss_pred CEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 408 DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 408 D~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
|.|+- |+|... .+..+..++++||+++...
T Consensus 95 D~vid---~~g~~~-------------------------~~~~~~~~l~~~G~iv~~G 124 (168)
T d1uufa2 95 DFILN---TVAAPH-------------------------NLDDFTTLLKRDGTMTLVG 124 (168)
T ss_dssp EEEEE---CCSSCC-------------------------CHHHHHTTEEEEEEEEECC
T ss_pred ceeee---eeecch-------------------------hHHHHHHHHhcCCEEEEec
Confidence 98886 333221 1677899999999999644
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=96.11 E-value=0.0033 Score=58.03 Aligned_cols=45 Identities=16% Similarity=0.251 Sum_probs=38.7
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHH
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAK 381 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~ 381 (528)
.+|+.|||.+||+|..+.++... +-+-+|+|+++..++.|+++++
T Consensus 211 ~~gd~VlDpF~GSGTT~~aa~~~---~R~~ig~El~~~y~~~a~~Rl~ 255 (256)
T d1g60a_ 211 NPNDLVLDCFMGSGTTAIVAKKL---GRNFIGCDMNAEYVNQANFVLN 255 (256)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHH
T ss_pred CCCCEEEECCCCchHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHHc
Confidence 67999999999999877665543 4689999999999999999876
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=95.91 E-value=0.026 Score=48.95 Aligned_cols=54 Identities=15% Similarity=0.175 Sum_probs=40.5
Q ss_pred HhcCCCCCCeEEEeCCccchHH-HHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCc
Q 009708 329 AVVDPQPGQSIVDCCAAPGGKT-LYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS 387 (528)
Q Consensus 329 ~~l~~~~g~~VLDl~aG~G~kt-~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~ 387 (528)
...++++|++||=.|||.++.. .+++.. .+..+|+++|.++.+++.++ ++|...
T Consensus 22 ~~~~vk~GdtVlV~GaGG~G~~~~~~~~~-~g~~~Vi~~~~~~~k~~~a~----~~Ga~~ 76 (176)
T d2jhfa2 22 KVAKVTQGSTCAVFGLGGVGLSVIMGCKA-AGAARIIGVDINKDKFAKAK----EVGATE 76 (176)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHH-TTCSEEEEECSCGGGHHHHH----HTTCSE
T ss_pred HhhCCCCCCEEEEECCCCcHHHHHHHHHH-cCCceEEeecCcHHHHHHHH----HhCCee
Confidence 4567899999999999876644 455554 44579999999999998765 456653
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=95.89 E-value=0.0054 Score=57.26 Aligned_cols=49 Identities=14% Similarity=0.112 Sum_probs=41.3
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcC
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQ 384 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g 384 (528)
..+|+.|||.+||+|..+.++..+ +-+.+|+|+++..++.++++++...
T Consensus 205 s~~gdiVLDpF~GSGTT~~Aa~~l---gR~~ig~El~~~y~~~a~~Ri~~~~ 253 (279)
T d1eg2a_ 205 SHPGSTVLDFFAGSGVTARVAIQE---GRNSICTDAAPVFKEYYQKQLTFLQ 253 (279)
T ss_dssp SCTTCEEEETTCTTCHHHHHHHHH---TCEEEEEESSTHHHHHHHHHHHHC-
T ss_pred cCCCCEEEecCCCCcHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhh
Confidence 358999999999999977766554 3589999999999999999998754
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.86 E-value=0.047 Score=50.62 Aligned_cols=95 Identities=16% Similarity=0.086 Sum_probs=67.1
Q ss_pred CCCeEEEeCCccchHHHHHHHHc-CCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCL-SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~-~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
.|..||=.|++. |.+..+|+.+ ..+.+|+.+|.++..++.+.+.++..+..+.+.++++|+.+.... ..
T Consensus 9 k~Kv~lITGas~-GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~~ 87 (257)
T d1xg5a_ 9 RDRLALVTGASG-GIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQH 87 (257)
T ss_dssp TTCEEEEESTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence 367888888775 5666666654 235689999999999999999999888776788899999874211 12
Q ss_pred CCCCEEEEcCCCCCCccccCCchhhc
Q 009708 405 VKCDKVLLDAPCSGLGVLSKRADLRW 430 (528)
Q Consensus 405 ~~fD~Vl~D~Pcsg~G~~~~~pd~~~ 430 (528)
+..|.++.++.....+.+...++-.|
T Consensus 88 g~iD~lVnnAg~~~~~~~~~~~~~~~ 113 (257)
T d1xg5a_ 88 SGVDICINNAGLARPDTLLSGSTSGW 113 (257)
T ss_dssp CCCSEEEECCCCCCCCCTTTCCHHHH
T ss_pred CCCCEEEecccccCCCccccccHHHH
Confidence 57999998876654444433333333
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=95.82 E-value=0.01 Score=51.79 Aligned_cols=96 Identities=21% Similarity=0.238 Sum_probs=64.2
Q ss_pred HhcCCCCCCeEEEeCC-cc-chHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCC
Q 009708 329 AVVDPQPGQSIVDCCA-AP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVK 406 (528)
Q Consensus 329 ~~l~~~~g~~VLDl~a-G~-G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~ 406 (528)
...++++|++||=.|+ |+ |..++++|+.+ +.+|++++.++++++.++ .+|.+..+. ..|..... .....
T Consensus 21 ~~~~~~~g~~VlI~ga~G~vG~~aiqlak~~--G~~vi~~~~~~~~~~~~~----~lGa~~~i~--~~~~~~~~-~~~~g 91 (171)
T d1iz0a2 21 KRAQARPGEKVLVQAAAGALGTAAVQVARAM--GLRVLAAASRPEKLALPL----ALGAEEAAT--YAEVPERA-KAWGG 91 (171)
T ss_dssp HHTTCCTTCEEEESSTTBHHHHHHHHHHHHT--TCEEEEEESSGGGSHHHH----HTTCSEEEE--GGGHHHHH-HHTTS
T ss_pred HHhCCCCCCEEEEEeccccchhhhhhhhccc--cccccccccccccccccc----ccccceeee--hhhhhhhh-hcccc
Confidence 4457899999998885 44 55667788774 368999999998887654 468774221 22211111 12456
Q ss_pred CCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEE
Q 009708 407 CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463 (528)
Q Consensus 407 fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvy 463 (528)
+|+|| | |+| .. +..+.+.|++||+++.
T Consensus 92 ~D~v~-d--~~G-~~--------------------------~~~~~~~l~~~G~~v~ 118 (171)
T d1iz0a2 92 LDLVL-E--VRG-KE--------------------------VEESLGLLAHGGRLVY 118 (171)
T ss_dssp EEEEE-E--CSC-TT--------------------------HHHHHTTEEEEEEEEE
T ss_pred ccccc-c--ccc-hh--------------------------HHHHHHHHhcCCcEEE
Confidence 99775 5 555 12 5678899999999884
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=95.74 E-value=0.015 Score=50.52 Aligned_cols=55 Identities=15% Similarity=0.228 Sum_probs=41.5
Q ss_pred HhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCc
Q 009708 329 AVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS 387 (528)
Q Consensus 329 ~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~ 387 (528)
...++++|++|+=.|||+++....+.....+...|+++|.++++++.++ .+|.+.
T Consensus 22 ~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~----~~GAd~ 76 (175)
T d1cdoa2 22 NTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAK----VFGATD 76 (175)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH----HTTCCE
T ss_pred HhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHH----HcCCcE
Confidence 4557899999999999996655443333345679999999999997754 578764
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=95.61 E-value=0.023 Score=49.16 Aligned_cols=103 Identities=14% Similarity=0.134 Sum_probs=65.4
Q ss_pred HhcCCCCCCeEEEeCCccch-HHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEc--Ccccccc-ccCC
Q 009708 329 AVVDPQPGQSIVDCCAAPGG-KTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH--ADLRTFA-DNST 404 (528)
Q Consensus 329 ~~l~~~~g~~VLDl~aG~G~-kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~--~D~~~~~-~~~~ 404 (528)
...+++||++||=.|||..+ .++++++.++ ...|+++|.++.+++.++ ++|.+..+.... .+..... ....
T Consensus 22 ~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G-~~~vi~~~~~~~k~~~ak----~lGa~~~i~~~~~~~~~~~~~~~~~~ 96 (176)
T d2fzwa2 22 NTAKLEPGSVCAVFGLGGVGLAVIMGCKVAG-ASRIIGVDINKDKFARAK----EFGATECINPQDFSKPIQEVLIEMTD 96 (176)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCGGGHHHHH----HHTCSEEECGGGCSSCHHHHHHHHTT
T ss_pred HhhCCCCCCEEEEecchhHHHHHHHHHHHHh-cCceEEEcccHHHHHHHH----HhCCcEEEeCCchhhHHHHHHHHHcC
Confidence 45678999999988887544 5566777653 568999999999987655 567764221111 0111111 1124
Q ss_pred CCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 405 ~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
..+|.|+- |+| . ...++.+..++++||.+++.
T Consensus 97 ~g~D~vid---~~G--~-----------------------~~~~~~~~~~~~~g~~~~~v 128 (176)
T d2fzwa2 97 GGVDYSFE---CIG--N-----------------------VKVMRAALEACHKGWGVSVV 128 (176)
T ss_dssp SCBSEEEE---CSC--C-----------------------HHHHHHHHHTBCTTTCEEEE
T ss_pred CCCcEeee---cCC--C-----------------------HHHHHHHHHhhcCCceeEEE
Confidence 57999885 332 1 12477889999999887754
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=95.51 E-value=0.013 Score=50.97 Aligned_cols=102 Identities=15% Similarity=0.020 Sum_probs=65.1
Q ss_pred HhcCCCCCCeEEEeCCcc--chHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc--CC
Q 009708 329 AVVDPQPGQSIVDCCAAP--GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN--ST 404 (528)
Q Consensus 329 ~~l~~~~g~~VLDl~aG~--G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~--~~ 404 (528)
+..+++||++||=.|+|+ |...+++|+.+ +.+|++++.++++++.++ .+|.+..+..-..|..+-... .+
T Consensus 22 ~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~--Ga~Vi~~~~s~~k~~~~~----~lGa~~vi~~~~~d~~~~v~~~t~g 95 (179)
T d1qora2 22 KTYEIKPDEQFLFHAAAGGVGLIACQWAKAL--GAKLIGTVGTAQKAQSAL----KAGAWQVINYREEDLVERLKEITGG 95 (179)
T ss_dssp TTSCCCTTCEEEESSTTBHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHH----HHTCSEEEETTTSCHHHHHHHHTTT
T ss_pred HHhCCCCCCEEEEEccccccchHHHHHHHHh--CCeEeecccchHHHHHHH----hcCCeEEEECCCCCHHHHHHHHhCC
Confidence 445688999998885554 55778888875 469999999999988765 457764222122232221111 24
Q ss_pred CCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 405 ~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
..+|+|+ |.-. |- .+..+...++++|+++...
T Consensus 96 ~g~d~v~-d~~g---~~-------------------------~~~~~~~~l~~~G~~v~~g 127 (179)
T d1qora2 96 KKVRVVY-DSVG---RD-------------------------TWERSLDCLQRRGLMVSFG 127 (179)
T ss_dssp CCEEEEE-ECSC---GG-------------------------GHHHHHHTEEEEEEEEECC
T ss_pred CCeEEEE-eCcc---HH-------------------------HHHHHHHHHhcCCeeeecc
Confidence 5688765 4222 11 2667888999999877533
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=95.47 E-value=0.0049 Score=58.64 Aligned_cols=49 Identities=8% Similarity=0.019 Sum_probs=39.9
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcC
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQ 384 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g 384 (528)
..+|+.|||.+||+|..+.++..+ +-+.+|+|++++.++.+++++....
T Consensus 248 s~~gdiVlDpF~GSGTT~~AA~~l---gR~~Ig~El~~~y~~~a~~Rl~~~~ 296 (320)
T d1booa_ 248 TEPDDLVVDIFGGSNTTGLVAERE---SRKWISFEMKPEYVAASAFRFLDNN 296 (320)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHGGGSCSC
T ss_pred ccCCCEEEecCCCCcHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHHHhcc
Confidence 357999999999999877665553 4689999999999999988766543
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.25 E-value=0.011 Score=51.64 Aligned_cols=101 Identities=18% Similarity=0.226 Sum_probs=64.0
Q ss_pred HHhcCCCCCCeEEEeC--CccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc--C
Q 009708 328 VAVVDPQPGQSIVDCC--AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN--S 403 (528)
Q Consensus 328 ~~~l~~~~g~~VLDl~--aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~--~ 403 (528)
.....+++|++||=.| .|.|..++++|..+ +.++++++-+++..+.++ ..|.+..+.....|..+.... .
T Consensus 18 ~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~--g~~vi~~~~~~~~~~~l~----~~Ga~~vi~~~~~~~~~~v~~~t~ 91 (183)
T d1pqwa_ 18 CEVGRLSPGERVLIHSATGGVGMAAVSIAKMI--GARIYTTAGSDAKREMLS----RLGVEYVGDSRSVDFADEILELTD 91 (183)
T ss_dssp HTTSCCCTTCEEEETTTTSHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHH----TTCCSEEEETTCSTHHHHHHHHTT
T ss_pred HHHhCCCCCCEEEEECCCCCcccccchhhccc--cccceeeecccccccccc----cccccccccCCccCHHHHHHHHhC
Confidence 3455688999999765 45566778888775 368888888888776654 568764222111222221111 1
Q ss_pred CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEE
Q 009708 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463 (528)
Q Consensus 404 ~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvy 463 (528)
+..||+|+. |.| | +.++.+++.|+++|++|.
T Consensus 92 ~~g~d~v~d---~~g-~-------------------------~~~~~~~~~l~~~G~~v~ 122 (183)
T d1pqwa_ 92 GYGVDVVLN---SLA-G-------------------------EAIQRGVQILAPGGRFIE 122 (183)
T ss_dssp TCCEEEEEE---CCC-T-------------------------HHHHHHHHTEEEEEEEEE
T ss_pred CCCEEEEEe---ccc-c-------------------------hHHHHHHHHhcCCCEEEE
Confidence 457999884 322 1 136778899999999884
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.75 E-value=0.077 Score=49.37 Aligned_cols=125 Identities=14% Similarity=0.031 Sum_probs=78.1
Q ss_pred CCeEEEeCCccchHHHHHHHHcC--CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLS--GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~--~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
|.+|-=+--|++|++..+|+.+- ++.+|+.++.++++++.+.+.++..+.. +.++..|+.+.... ..
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~--~~~~~~Dvs~~~sv~~~~~~~~~~~ 79 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLS--PRFHQLDIDDLQSIRALRDFLRKEY 79 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCC--CEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCc--EEEEEEecCCHHHHHHHHHHHHHhc
Confidence 56664344455677777766542 3569999999999999999998887754 67888999774321 12
Q ss_pred CCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 405 ~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
+..|+++.|+=....+......+..|. ..+.-...-...+.+.++.+++++|++|..+
T Consensus 80 g~iDiLVnNAGi~~~~~~~~~~~~~~~---~~~~vN~~g~~~l~~~~lp~m~~~g~ivnis 137 (275)
T d1wmaa1 80 GGLDVLVNNAGIAFKVADPTPFHIQAE---VTMKTNFFGTRDVCTELLPLIKPQGRVVNVS 137 (275)
T ss_dssp SSEEEEEECCCCCCCTTCCSCHHHHHH---HHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred CCcEEEEEcCCcCCCCCcccCCHHHHH---HHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence 579999988654332222211111221 1111112223356778888999999988654
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=94.69 E-value=0.16 Score=46.60 Aligned_cols=93 Identities=12% Similarity=0.091 Sum_probs=65.1
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccc---------cCC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD---------NST 404 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~---------~~~ 404 (528)
++..+|=.|++ +|.+..+|..+- .+.+|+.+|.+++.++.+.+.++..|.+ +.++.+|+++... ...
T Consensus 9 enKvalITGas-~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g~~--~~~~~~Dvt~~~~v~~~~~~~~~~~ 85 (251)
T d2c07a1 9 ENKVALVTGAG-RGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYE--SSGYAGDVSKKEEISEVINKILTEH 85 (251)
T ss_dssp SSCEEEEESTT-SHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTCC--EEEEECCTTCHHHHHHHHHHHHHHC
T ss_pred CCCEEEEeCCC-CHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCc--EEEEEccCCCHHHHHHHHHHHHHhc
Confidence 36677777765 567887777664 3459999999999999999888877754 7788999987421 113
Q ss_pred CCCCEEEEcCCCCCCccccCCchhhc
Q 009708 405 VKCDKVLLDAPCSGLGVLSKRADLRW 430 (528)
Q Consensus 405 ~~fD~Vl~D~Pcsg~G~~~~~pd~~~ 430 (528)
+..|.++.++.....+.+...++-.|
T Consensus 86 g~iDilvnnag~~~~~~~~~~~~~~~ 111 (251)
T d2c07a1 86 KNVDILVNNAGITRDNLFLRMKNDEW 111 (251)
T ss_dssp SCCCEEEECCCCCCCCCTTTCCHHHH
T ss_pred CCceeeeeccccccccccccccHHHH
Confidence 67999998876655554443333334
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=94.64 E-value=0.013 Score=55.57 Aligned_cols=67 Identities=13% Similarity=0.075 Sum_probs=46.9
Q ss_pred EEEcCccccccccC-CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 390 RTIHADLRTFADNS-TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 390 ~~~~~D~~~~~~~~-~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
+++++|+.+..... .+++|+|+.|||+. +|. + +........+......+.+..+.++|+|+|.++..
T Consensus 14 ~l~~GD~le~l~~l~~~sVdli~tDPPY~-~~~---~----~~~~~~~~~~y~~~~~~~l~~~~rvLk~~G~i~i~ 81 (320)
T d1booa_ 14 SMYIGDSLELLESFPEESISLVMTSPPFA-LQR---K----KEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVD 81 (320)
T ss_dssp EEEESCHHHHGGGSCSSCEEEEEECCCCS-SSC---S----CSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEehhHHHHHhhCccCCCCEEEECCCCc-CCC---C----CCCCCCCHHHHHHHHHHHHHHHHHhCcccCccccc
Confidence 68999998765543 57899999999994 221 1 11111233455566677899999999999988754
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=94.49 E-value=0.049 Score=47.85 Aligned_cols=105 Identities=15% Similarity=0.136 Sum_probs=63.5
Q ss_pred HHhcCCCCCCeEEEeCCc---cchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccc---
Q 009708 328 VAVVDPQPGQSIVDCCAA---PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD--- 401 (528)
Q Consensus 328 ~~~l~~~~g~~VLDl~aG---~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~--- 401 (528)
.....++||++||=..+| .|..++++|+.++ .+|+++--++...+...+.++.+|.+..+..-..|...+..
T Consensus 21 ~~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~G--a~vI~~v~~~~~~~~~~~~~~~lGad~vi~~~~~~~~~~~~~v~ 98 (189)
T d1gu7a2 21 THYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLN--FNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIK 98 (189)
T ss_dssp HSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHT--CEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHH
T ss_pred HHHhCCCCCCEEEEEeCCCchHHHHHHHHHhhcC--CeEEEEEecccccchHHhhhhhccccEEEeccccchhHHHHHHH
Confidence 345678899877766333 3456678888763 57887755666666666777888988533211112222111
Q ss_pred ----cCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEE
Q 009708 402 ----NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463 (528)
Q Consensus 402 ----~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvy 463 (528)
.....+|+|| |+- | | ..+..+++.|++||++|.
T Consensus 99 ~~~~~~g~~vdvv~-D~v--g-~-------------------------~~~~~~~~~l~~~G~~v~ 135 (189)
T d1gu7a2 99 EWIKQSGGEAKLAL-NCV--G-G-------------------------KSSTGIARKLNNNGLMLT 135 (189)
T ss_dssp HHHHHHTCCEEEEE-ESS--C-H-------------------------HHHHHHHHTSCTTCEEEE
T ss_pred HHHhhccCCceEEE-ECC--C-c-------------------------chhhhhhhhhcCCcEEEE
Confidence 1135688776 432 2 0 125667889999999884
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=94.48 E-value=0.028 Score=49.14 Aligned_cols=103 Identities=16% Similarity=0.100 Sum_probs=66.0
Q ss_pred HHHHhcCCCCCCeEEEeCCcc--chHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccc--cc
Q 009708 326 LVVAVVDPQPGQSIVDCCAAP--GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF--AD 401 (528)
Q Consensus 326 l~~~~l~~~~g~~VLDl~aG~--G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~--~~ 401 (528)
.+.+..++++|++||=.|++. |..++++|+.+ +.+|+++..++++++.++ ..|.+..+.....|..+. ..
T Consensus 20 al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~--Ga~vi~~~~~~~~~~~~~----~~Ga~~vi~~~~~~~~~~~~~~ 93 (182)
T d1v3va2 20 GLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKIAYLK----QIGFDAAFNYKTVNSLEEALKK 93 (182)
T ss_dssp HHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHH----HTTCSEEEETTSCSCHHHHHHH
T ss_pred HHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHcc--CCEEEEeCCCHHHHHHHH----hhhhhhhcccccccHHHHHHHH
Confidence 344567889999999777754 44667777764 469999999998876654 457764221111111111 11
Q ss_pred cCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEE
Q 009708 402 NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463 (528)
Q Consensus 402 ~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvy 463 (528)
.....+|+|+ | |.| .+.++.+++.|++||+++.
T Consensus 94 ~~~~Gvd~v~-D--~vG--------------------------~~~~~~~~~~l~~~G~~v~ 126 (182)
T d1v3va2 94 ASPDGYDCYF-D--NVG--------------------------GEFLNTVLSQMKDFGKIAI 126 (182)
T ss_dssp HCTTCEEEEE-E--SSC--------------------------HHHHHHHGGGEEEEEEEEE
T ss_pred hhcCCCceeE-E--ecC--------------------------chhhhhhhhhccCCCeEEe
Confidence 1245699876 3 333 1237788999999999884
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=93.79 E-value=0.31 Score=44.74 Aligned_cols=125 Identities=9% Similarity=-0.027 Sum_probs=73.5
Q ss_pred CCCeEEEeCCccchHHHHHHHHc-CCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccc----------cC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCL-SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD----------NS 403 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~-~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~----------~~ 403 (528)
.|.++|=.|++. |.+..+|..+ ..+.+|+.+|.++..++.+.+.++..+.. +..+.+|+.+... .+
T Consensus 7 kgK~alVTGas~-GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~--~~~~~~Dv~~~~~v~~~~~~~~~~~ 83 (259)
T d1xq1a_ 7 KAKTVLVTGGTK-GIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQ--VTGSVCDASLRPEREKLMQTVSSMF 83 (259)
T ss_dssp TTCEEEETTTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCC--EEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCc--eEEEeccCCCHHHHHHHHHHHHHHh
Confidence 377788888764 5566665544 23569999999999999988888877653 7788889876321 11
Q ss_pred CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCc--CCCEEEEEc
Q 009708 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVK--PGGVLVYST 465 (528)
Q Consensus 404 ~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~Lk--pGG~LvysT 465 (528)
.+..|.++.++.....+.+...+.-.|.. .+.-...-...+.+.+...++ .+|.+|..+
T Consensus 84 ~g~idilvnnAG~~~~~~~~~~~~~~~~~---~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~is 144 (259)
T d1xq1a_ 84 GGKLDILINNLGAIRSKPTLDYTAEDFSF---HISTNLESAYHLSQLAHPLLKASGCGNIIFMS 144 (259)
T ss_dssp TTCCSEEEEECCC------CCCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHSSCEEEEEC
T ss_pred CCCcccccccccccCCCchhhCCHHHHHH---HHHHHhhhheeeehhhhhcccccccccccccc
Confidence 35789999887765544443333333321 111111122234455555553 468887654
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=93.78 E-value=0.22 Score=45.80 Aligned_cols=125 Identities=17% Similarity=0.105 Sum_probs=74.6
Q ss_pred CCCeEEEeCCccchHHHHHHHHc-CCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCL-SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~-~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
.|.++|=.|++. |++..+|..+ ..+.+|+.+|.+++.++.+.+.++..|.+ +..+.+|+.+.... ..
T Consensus 4 ~gK~alITGas~-GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~--~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (260)
T d1zema1 4 NGKVCLVTGAGG-NIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVE--ARSYVCDVTSEEAVIGTVDSVVRDF 80 (260)
T ss_dssp TTCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTSC--EEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCc--EEEEEccCCCHHHHHHHHHHHHHHh
Confidence 477888888765 5565555543 23568999999999999999988887754 67888998764211 12
Q ss_pred CCCCEEEEcCCCCCC-ccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccC--cCCCEEEEEc
Q 009708 405 VKCDKVLLDAPCSGL-GVLSKRADLRWNRRLEDMEELKILQDELLDAASLLV--KPGGVLVYST 465 (528)
Q Consensus 405 ~~fD~Vl~D~Pcsg~-G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~L--kpGG~LvysT 465 (528)
+..|.++.++-..+. +.+...++-.|... +.....-...+.+.+...+ +.+|.+|+.+
T Consensus 81 g~iDilVnnaG~~~~~~~~~~~~~~~~~~~---~~vnl~~~~~~~~~~~~~m~~~~~G~II~is 141 (260)
T d1zema1 81 GKIDFLFNNAGYQGAFAPVQDYPSDDFARV---LTINVTGAFHVLKAVSRQMITQNYGRIVNTA 141 (260)
T ss_dssp SCCCEEEECCCCCCCCBCGGGCCHHHHHHH---HHHHTHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred CCCCeehhhhccccccCccccccHHHHHhh---ccccccccccchhhHHhhhhhhcCCCCCeee
Confidence 579999987665432 43333333334311 1111111222344444333 4678887653
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=93.65 E-value=0.02 Score=52.38 Aligned_cols=66 Identities=17% Similarity=0.313 Sum_probs=45.6
Q ss_pred EEEcCccccccccC-CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEE
Q 009708 390 RTIHADLRTFADNS-TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463 (528)
Q Consensus 390 ~~~~~D~~~~~~~~-~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvy 463 (528)
+++++|+.+..... .+++|+|+.|||+. .|. . + |. ......+........+.++.++|+|||.++.
T Consensus 6 ~i~~gDcle~l~~lpd~sVdliitdPPY~-~~~--~--~--~d-~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~ 72 (256)
T d1g60a_ 6 KIHQMNCFDFLDQVENKSVQLAVIDPPYN-LSK--A--D--WD-SFDSHNEFLAFTYRWIDKVLDKLDKDGSLYI 72 (256)
T ss_dssp SEEECCHHHHHHHSCTTCEEEEEECCCCS-SCS--S--G--GG-CCSSHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEEeccHHHHHhhCcCCCcCEEEECCCCC-CCc--C--c--Cc-CCCCHHHHHHHHHHHHHHhhhccccCccccc
Confidence 36899998865543 57899999999983 221 0 0 11 1123445566677889999999999998873
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=93.27 E-value=0.47 Score=43.64 Aligned_cols=125 Identities=16% Similarity=0.035 Sum_probs=78.6
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCC-hHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------C
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDIN-KGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------S 403 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s-~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~ 403 (528)
.|.++|=.|++. |++..+++.+- .+.+|+.+|.+ ++.++.+.+.++..|.+ +.++.+|..+.... .
T Consensus 17 ~gK~~lITGas~-GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g~~--~~~~~~D~~~~~~v~~~~~~~~~~ 93 (272)
T d1g0oa_ 17 EGKVALVTGAGR-GIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSD--AACVKANVGVVEDIVRMFEEAVKI 93 (272)
T ss_dssp TTCEEEETTTTS-HHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCC--EEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCC-HHHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhhCCc--eeeEeCCCCCHHHHHHHHHHHHHH
Confidence 377788888765 55665555442 34589888886 66778888888887764 67888898763211 1
Q ss_pred CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 404 ~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
.+..|.++.++.....+.+....+..|. ..+.....-...+.+.+...++.+|.++..+
T Consensus 94 ~g~idilV~nag~~~~~~~~~~~~~~~~---~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~ 152 (272)
T d1g0oa_ 94 FGKLDIVCSNSGVVSFGHVKDVTPEEFD---RVFTINTRGQFFVAREAYKHLEIGGRLILMG 152 (272)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHH---HHHHHHTHHHHHHHHHHHHHSCTTCEEEEEC
T ss_pred hCCCCccccccccchhhhhhhhhhhHHH---HHhhhccceeeeecccccccccccccccccc
Confidence 2578999888776555544444433343 1122222334556777788888888766543
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=93.16 E-value=0.012 Score=54.74 Aligned_cols=64 Identities=13% Similarity=0.158 Sum_probs=43.0
Q ss_pred EEEcCccccccccC-CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 390 RTIHADLRTFADNS-TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 390 ~~~~~D~~~~~~~~-~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
.++.+|+.+..... .+++|+|+.|||+. .|. . .|... .+........+.++.++|||||.++..
T Consensus 6 ~~~~~D~le~l~~l~d~SIDliitDPPYn-~~~--~----~~~~~----~~y~~~~~~~~~e~~rvLk~~G~~~~~ 70 (279)
T d1eg2a_ 6 VYDVCDCLDTLAKLPDDSVQLIICDPPYN-IML--A----DWDDH----MDYIGWAKRWLAEAERVLSPTGSIAIF 70 (279)
T ss_dssp EEEECCHHHHHHTSCTTCEEEEEECCCSB-CCG--G----GGGTC----SSHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred eEEechHHHHHhhCcCCCccEEEECCCCC-CCc--c----cccCH----HHHHHHHHHHHHHHHHHhCCCccEEEe
Confidence 46789998865543 57899999999983 121 1 12111 123344566799999999999988753
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=93.06 E-value=0.54 Score=43.00 Aligned_cols=80 Identities=14% Similarity=0.065 Sum_probs=57.0
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccc----------cC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD----------NS 403 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~----------~~ 403 (528)
.|.++|=.|++ +|.+..+|..+- .+.+|+.+|.+++.++.+.+.++..|.. +.++.+|+.+... ..
T Consensus 7 ~GK~alITGas-~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~--~~~~~~Dv~~~~~v~~~~~~~~~~~ 83 (259)
T d2ae2a_ 7 EGCTALVTGGS-RGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFK--VEASVCDLSSRSERQELMNTVANHF 83 (259)
T ss_dssp TTCEEEEESCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCE--EEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCC--ceEEEeeCCCHHHHHHHHHHHHHHh
Confidence 47788888876 456666665542 3469999999999999998888877643 6778889876321 12
Q ss_pred CCCCCEEEEcCCCC
Q 009708 404 TVKCDKVLLDAPCS 417 (528)
Q Consensus 404 ~~~fD~Vl~D~Pcs 417 (528)
..+.|.++.++-..
T Consensus 84 ~~~idilvnnAG~~ 97 (259)
T d2ae2a_ 84 HGKLNILVNNAGIV 97 (259)
T ss_dssp TTCCCEEEECCCCC
T ss_pred CCCceEEEECCcee
Confidence 34689998876543
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.97 E-value=0.071 Score=46.51 Aligned_cols=101 Identities=13% Similarity=0.014 Sum_probs=63.0
Q ss_pred cCCCCCCeEEEeCCc--cchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccc-cccCCCCC
Q 009708 331 VDPQPGQSIVDCCAA--PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF-ADNSTVKC 407 (528)
Q Consensus 331 l~~~~g~~VLDl~aG--~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~-~~~~~~~f 407 (528)
-..++|++||=.|++ -|..++++|+.+ +.+|++.--+++..+.++ .+|.+..+. ...+..+. ....++.|
T Consensus 27 g~~~~g~~VLI~gaaGGVG~~aiQlak~~--Ga~Viat~~s~~k~~~~~----~lGa~~vi~-~~~~~~~~~~~~~~~gv 99 (176)
T d1xa0a2 27 GLTPERGPVLVTGATGGVGSLAVSMLAKR--GYTVEASTGKAAEHDYLR----VLGAKEVLA-REDVMAERIRPLDKQRW 99 (176)
T ss_dssp TCCGGGCCEEESSTTSHHHHHHHHHHHHT--TCCEEEEESCTTCHHHHH----HTTCSEEEE-CC---------CCSCCE
T ss_pred CCCCCCCEEEEEeccchHHHHHHHHHHHc--CCceEEecCchHHHHHHH----hcccceeee-cchhHHHHHHHhhccCc
Confidence 345678889888754 455677888774 478999998888887664 567774332 12111111 11124679
Q ss_pred CEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 408 DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 408 D~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
|+|+ |.- |-. .+..+.+.|++||+++.+...
T Consensus 100 D~vi-d~v--gg~--------------------------~~~~~l~~l~~~Griv~~G~~ 130 (176)
T d1xa0a2 100 AAAV-DPV--GGR--------------------------TLATVLSRMRYGGAVAVSGLT 130 (176)
T ss_dssp EEEE-ECS--TTT--------------------------THHHHHHTEEEEEEEEECSCC
T ss_pred CEEE-EcC--Cch--------------------------hHHHHHHHhCCCceEEEeecc
Confidence 9765 422 111 278889999999999976554
|
| >d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: FkbM-like domain: Methyltransferase FkbM species: Methylobacillus flagellatus [TaxId: 405]
Probab=92.91 E-value=0.097 Score=51.63 Aligned_cols=56 Identities=18% Similarity=0.233 Sum_probs=47.6
Q ss_pred cCCCCCCeEEEeCCccchHHHHHHHHcCC-CcEEEEEcCChHHHHHHHHHHHHcCCC
Q 009708 331 VDPQPGQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVN 386 (528)
Q Consensus 331 l~~~~g~~VLDl~aG~G~kt~~la~~~~~-~~~v~avD~s~~~l~~~~~n~~~~g~~ 386 (528)
+.+.+++.++|+||-.|..+..++....+ .++|+|+|.++...+.+++|++.++..
T Consensus 208 ~~l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~~~ 264 (395)
T d2py6a1 208 LRFSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDT 264 (395)
T ss_dssp CCCCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTS
T ss_pred cCcCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhcccc
Confidence 34567889999999999999888776554 368999999999999999999988764
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=92.66 E-value=0.55 Score=42.98 Aligned_cols=82 Identities=13% Similarity=0.057 Sum_probs=57.0
Q ss_pred CCCeEEEeCCccchHHHHHHHHc-CCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCL-SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~-~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
.|.++|=.|++.| .+..++..+ ..+.+|+.+|.+++.++.+...+...+....+..+.+|+.+.... ..
T Consensus 3 ~gK~alITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~ 81 (258)
T d1iy8a_ 3 TDRVVLITGGGSG-LGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERF 81 (258)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHHh
Confidence 3667888887654 555555433 235699999999999998888777665554578889998774321 12
Q ss_pred CCCCEEEEcCCCC
Q 009708 405 VKCDKVLLDAPCS 417 (528)
Q Consensus 405 ~~fD~Vl~D~Pcs 417 (528)
+..|.++.++-..
T Consensus 82 G~iDiLVnnAG~~ 94 (258)
T d1iy8a_ 82 GRIDGFFNNAGIE 94 (258)
T ss_dssp SCCSEEEECCCCC
T ss_pred CCCCEEEECCccc
Confidence 5799998876543
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.31 E-value=0.14 Score=44.69 Aligned_cols=105 Identities=13% Similarity=0.108 Sum_probs=65.0
Q ss_pred HHHhcCCCCC--CeEEEeC--CccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc
Q 009708 327 VVAVVDPQPG--QSIVDCC--AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 402 (528)
Q Consensus 327 ~~~~l~~~~g--~~VLDl~--aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~ 402 (528)
+....++++| ++||=.| .|.|..++++|+.++ ...|+++..+++....+ .+.+|.+..+.....|..+....
T Consensus 20 l~~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~G-a~~vi~~~~~~e~~~~l---~~~~gad~vi~~~~~~~~~~~~~ 95 (187)
T d1vj1a2 20 VQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLG-CSRVVGICGTQEKCLFL---TSELGFDAAVNYKTGNVAEQLRE 95 (187)
T ss_dssp HHHHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTT-CSEEEEEESSHHHHHHH---HHHSCCSEEEETTSSCHHHHHHH
T ss_pred HHHHhCCCCCCCCEEEEECCCchhhHHHHHHHHHcC-CcceecccchHHHHhhh---hhcccceEEeeccchhHHHHHHH
Confidence 3455567776 7788766 467889999998864 44688777776665443 33467664333222233222211
Q ss_pred -CCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 403 -STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 403 -~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
.+..+|+|+ |+- | | +.+..+++.|++||+++..
T Consensus 96 ~~~~GvDvv~-D~v--G-g-------------------------~~~~~~~~~l~~~G~iv~~ 129 (187)
T d1vj1a2 96 ACPGGVDVYF-DNV--G-G-------------------------DISNTVISQMNENSHIILC 129 (187)
T ss_dssp HCTTCEEEEE-ESS--C-H-------------------------HHHHHHHTTEEEEEEEEEC
T ss_pred HhccCceEEE-ecC--C-c-------------------------hhHHHHhhhccccccEEEe
Confidence 245699886 432 2 1 1377889999999999853
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=92.18 E-value=0.32 Score=44.54 Aligned_cols=125 Identities=13% Similarity=-0.016 Sum_probs=76.2
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHcCC-CcEEEE-EcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc--------
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCLSG-QGLVYA-IDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-------- 402 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~~~-~~~v~a-vD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~-------- 402 (528)
|-.|.+||=.| |+||.+.++|..+.. +.+|+. .+.+...++.+.+.++..|.+ +.++.+|+.+....
T Consensus 3 ~L~GK~alITG-as~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g~~--~~~~~~D~~~~~~v~~~~~~~~ 79 (259)
T d1ja9a_ 3 PLAGKVALTTG-AGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQ--GVAIQADISKPSEVVALFDKAV 79 (259)
T ss_dssp TTTTCEEEETT-TTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCC--EEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCCEEEEeC-CCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcCCC--ceEecCCCCCHHHHHHHHHHHH
Confidence 44588888666 557778777766533 346765 577888889999999988864 67889998763211
Q ss_pred -CCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEE
Q 009708 403 -STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463 (528)
Q Consensus 403 -~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvy 463 (528)
..+..|.++.++.-...+.+...++-.|. ..+.....-...+++.+...++.+|.+++
T Consensus 80 ~~~g~idilinnag~~~~~~~~~~~~~~~~---~~~~~n~~~~~~~~~~~~~~m~~~g~~ii 138 (259)
T d1ja9a_ 80 SHFGGLDFVMSNSGMEVWCDELEVTQELFD---KVFNLNTRGQFFVAQQGLKHCRRGGRIIL 138 (259)
T ss_dssp HHHSCEEEEECCCCCCCCCCGGGCCHHHHH---HHHHHHTHHHHHHHHHHHHHEEEEEEEEE
T ss_pred HHcCCCcEEEeccccccccccccchHHHHH---HHHhhccceeeeehhhhhhhhhcCCcccc
Confidence 12568988887665444443333332332 11222222233456666666676665543
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=92.00 E-value=0.57 Score=42.43 Aligned_cols=122 Identities=15% Similarity=0.082 Sum_probs=71.0
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
.|.++|=.|++. |.+..+|+.+- .+.+|+.+|.+++.++.+.+.+. .....+..|+.+.... ..
T Consensus 3 ~gK~alITGas~-GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 76 (243)
T d1q7ba_ 3 EGKIALVTGASR-GIGRAIAETLAARGAKVIGTATSENGAQAISDYLG-----ANGKGLMLNVTDPASIESVLEKIRAEF 76 (243)
T ss_dssp TTCEEEESSCSS-HHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHG-----GGEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCC-HHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhC-----CCCcEEEEEecCHHHhhhhhhhhhccc
Confidence 366777777764 55666665542 35689999999998887766542 2356778898764211 13
Q ss_pred CCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccC--cCCCEEEEEc
Q 009708 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLV--KPGGVLVYST 465 (528)
Q Consensus 405 ~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~L--kpGG~LvysT 465 (528)
++.|.++.++-....+.+...+.-.|.. .+.-...-...+.+.+...+ +.+|.+|+.+
T Consensus 77 g~iDilVnnAg~~~~~~~~~~~~~~~~~---~~~vNl~~~~~~~~~~~~~m~~~~~G~II~is 136 (243)
T d1q7ba_ 77 GEVDILVNNAGITRDNLLMRMKDEEWND---IIETNLSSVFRLSKAVMRAMMKKRHGRIITIG 136 (243)
T ss_dssp CSCSEEEECCCCCCCCCGGGCCHHHHHH---HHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred CCcceehhhhhhcccccccccccccccc---ccceeechhhhhHHHHHHHHHHcCCCEeeeec
Confidence 5799999877554444443333333421 11111112223455555555 3468877653
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=91.78 E-value=0.62 Score=42.51 Aligned_cols=80 Identities=15% Similarity=0.080 Sum_probs=57.7
Q ss_pred CCCeEEEeCCccchHHHHHHHHc-CCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCL-SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~-~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
.|.++|=.|++ +|.+..+|..+ ..+.+|+.+|.+++.++.+.+.++..|.+ +.++.+|+.+.... ..
T Consensus 10 ~gK~alITGas-~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g~~--~~~~~~Dvs~~~~~~~~~~~~~~~~ 86 (255)
T d1fmca_ 10 DGKCAIITGAG-AGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQ--AFACRCDITSEQELSALADFAISKL 86 (255)
T ss_dssp TTCEEEETTTT-SHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTCC--EEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCc--EEEEEccCCCHHHHHHHHHHHHHHc
Confidence 47777866655 56777777655 34569999999999999999988887754 67888999874321 12
Q ss_pred CCCCEEEEcCCCC
Q 009708 405 VKCDKVLLDAPCS 417 (528)
Q Consensus 405 ~~fD~Vl~D~Pcs 417 (528)
+..|.++.++-..
T Consensus 87 g~iDilvnnAG~~ 99 (255)
T d1fmca_ 87 GKVDILVNNAGGG 99 (255)
T ss_dssp SSCCEEEECCCCC
T ss_pred CCCCEeeeCCcCC
Confidence 5799888765543
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.47 E-value=0.75 Score=41.68 Aligned_cols=83 Identities=17% Similarity=0.059 Sum_probs=58.7
Q ss_pred CCCeEEEeCCccchHHHHHHHHc-CCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccc---------cCC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCL-SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD---------NST 404 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~-~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~---------~~~ 404 (528)
.|..||=.|++.| .+..+|..+ ..+.+|+.+|.+++.++.+.+.++..|.. +..+.+|+++... ...
T Consensus 6 ~Gkv~lITGas~G-IG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~~~~--~~~~~~Dvs~~~~v~~~~~~i~~~~ 82 (244)
T d1yb1a_ 6 TGEIVLITGAGHG-IGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAK--VHTFVVDCSNREDIYSSAKKVKAEI 82 (244)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCC--EEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCc--EEEEEeeCCCHHHHHHHHHHHHHHc
Confidence 3778888888765 444444433 23579999999999999999999887743 7788899987532 113
Q ss_pred CCCCEEEEcCCCCCCc
Q 009708 405 VKCDKVLLDAPCSGLG 420 (528)
Q Consensus 405 ~~fD~Vl~D~Pcsg~G 420 (528)
+..|.++.++-.+..+
T Consensus 83 g~idilinnag~~~~~ 98 (244)
T d1yb1a_ 83 GDVSILVNNAGVVYTS 98 (244)
T ss_dssp CCCSEEEECCCCCCCC
T ss_pred CCCceeEeeccccccc
Confidence 5789998866554433
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=91.36 E-value=0.73 Score=41.93 Aligned_cols=122 Identities=16% Similarity=0.018 Sum_probs=68.7
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
.|.++|=.|++ +|.+..+|..+- .+.+|+.+|.+++.++.+.+.+ +- ...++.+|+.+.... ..
T Consensus 5 ~gK~alITGas-~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~---~~--~~~~~~~Dv~~~~~~~~~~~~~~~~~ 78 (253)
T d1hxha_ 5 QGKVALVTGGA-SGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAEL---GE--RSMFVRHDVSSEADWTLVMAAVQRRL 78 (253)
T ss_dssp TTCEEEETTTT-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH---CT--TEEEECCCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---CC--CeEEEEeecCCHHHHHHHHHHHHHHh
Confidence 46778877765 556666665442 3568999999998887765543 42 356788898764221 12
Q ss_pred CCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCc-CCCEEEEEc
Q 009708 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVK-PGGVLVYST 465 (528)
Q Consensus 405 ~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~Lk-pGG~LvysT 465 (528)
+..|.++.++-....+.+...+.-.|.. .+.-...-...+.+.+...++ .||.+|..+
T Consensus 79 g~iDilVnnAG~~~~~~~~~~~~~~~~~---~~~vNl~~~~~~~~~~~~~m~~~~G~Iv~is 137 (253)
T d1hxha_ 79 GTLNVLVNNAGILLPGDMETGRLEDFSR---LLKINTESVFIGCQQGIAAMKETGGSIINMA 137 (253)
T ss_dssp CSCCEEEECCCCCCCBCTTTCCHHHHHH---HHHHHTHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred CCCCeEEecccccCCCCcccCCHHHHHH---HHHHhhhHHHHHHHHHHHHHHhcCCceeccc
Confidence 5789999877544333333222222321 111111112234455555554 578877553
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=91.33 E-value=0.86 Score=41.56 Aligned_cols=87 Identities=15% Similarity=0.038 Sum_probs=61.6
Q ss_pred CCCeEEEeCCccchHHHHHHHHc-CCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccc----------cC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCL-SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD----------NS 403 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~-~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~----------~~ 403 (528)
.|.+||=.|++ +|.+..+|..+ ..+.+|+.++.++..++.+.+.++..+.. +.++.+|+.+... ..
T Consensus 5 ~gK~alITGas-~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~~~--~~~~~~D~s~~~~~~~~~~~~~~~~ 81 (258)
T d1ae1a_ 5 KGTTALVTGGS-KGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLN--VEGSVCDLLSRTERDKLMQTVAHVF 81 (258)
T ss_dssp TTCEEEEESCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCC--EEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCC--ceEEEeecCCHHHHHHHHHHHHHHh
Confidence 47788888886 55666666443 34579999999999999999988888754 6778899876431 12
Q ss_pred CCCCCEEEEcCCCCCCccccC
Q 009708 404 TVKCDKVLLDAPCSGLGVLSK 424 (528)
Q Consensus 404 ~~~fD~Vl~D~Pcsg~G~~~~ 424 (528)
.+..|+++.++.....+.+..
T Consensus 82 ~g~idilinnag~~~~~~~~~ 102 (258)
T d1ae1a_ 82 DGKLNILVNNAGVVIHKEAKD 102 (258)
T ss_dssp TSCCCEEEECCCCCCCCCTTT
T ss_pred CCCcEEEeccccccccCcccc
Confidence 356888888776655444433
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=91.11 E-value=0.67 Score=42.18 Aligned_cols=81 Identities=12% Similarity=0.012 Sum_probs=56.2
Q ss_pred EEEeCCccchHHHHHHHHc-CCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCCCCC
Q 009708 339 IVDCCAAPGGKTLYMASCL-SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STVKCD 408 (528)
Q Consensus 339 VLDl~aG~G~kt~~la~~~-~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~~~fD 408 (528)
+|=.|++ +|.+..+|..+ ..+.+|+.+|.+++.++.+.+.++..|.+ +.++.+|+.+.... ..+..|
T Consensus 4 alITGas-~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~g~~--~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD 80 (255)
T d1gega_ 4 ALVTGAG-QGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGH--AVAVKVDVSDRDQVFAAVEQARKTLGGFD 80 (255)
T ss_dssp EEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCC--EEEEECCTTSHHHHHHHHHHHHHHTTCCC
T ss_pred EEEcCCc-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCc--EEEEEeeCCCHHHHHHHHHHHHHHhCCcc
Confidence 4556655 56666666554 23569999999999999999988887754 67888999874321 136799
Q ss_pred EEEEcCCCCCCccc
Q 009708 409 KVLLDAPCSGLGVL 422 (528)
Q Consensus 409 ~Vl~D~Pcsg~G~~ 422 (528)
.++.++-....+.+
T Consensus 81 ilVnnAG~~~~~~~ 94 (255)
T d1gega_ 81 VIVNNAGVAPSTPI 94 (255)
T ss_dssp EEEECCCCCCCBCG
T ss_pred EEEecccccccCcH
Confidence 99887654433333
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=90.99 E-value=0.97 Score=40.98 Aligned_cols=124 Identities=12% Similarity=0.005 Sum_probs=70.5
Q ss_pred CCCeEEEeCCccchHHHHHHHHc-CCCcEEEEEcCChHHHHHHHHHH-HHcCCCccEEEEcCcccccccc---------C
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCL-SGQGLVYAIDINKGRLRILNETA-KLHQVNSVIRTIHADLRTFADN---------S 403 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~-~~~~~v~avD~s~~~l~~~~~n~-~~~g~~~~i~~~~~D~~~~~~~---------~ 403 (528)
.|.++|=.|++. |.+..+|..+ ..+.+|+.+|.+++.++.+.+.+ +..|.+ +.++.+|+.+.... .
T Consensus 4 ~gK~~lITGas~-GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~g~~--~~~~~~Dv~~~~~v~~~~~~~~~~ 80 (251)
T d1vl8a_ 4 RGRVALVTGGSR-GLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVE--TMAFRCDVSNYEEVKKLLEAVKEK 80 (251)
T ss_dssp TTCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCC--EEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCc--EEEEEccCCCHHHHHHHHHHHHHH
Confidence 377888888775 5566555543 23568999999999987766655 455543 67788998764211 1
Q ss_pred CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCc--CCCEEEEE
Q 009708 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVK--PGGVLVYS 464 (528)
Q Consensus 404 ~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~Lk--pGG~Lvys 464 (528)
.+..|.++.++-....+.+...+.-.|.. .+.-...-...+.+.+...++ .+|.+|..
T Consensus 81 ~g~iDiLVnnAG~~~~~~~~~~~~e~~~~---~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~i 140 (251)
T d1vl8a_ 81 FGKLDTVVNAAGINRRHPAEEFPLDEFRQ---VIEVNLFGTYYVCREAFSLLRESDNPSIINI 140 (251)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHH---HHHHHTHHHHHHHHHHHHHHTTCSSCEEEEE
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHH---HHHhhhhhhhhhhhhhhhccccccccccccc
Confidence 25799998876443333332222222321 111111222344555566564 35666654
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=90.93 E-value=0.96 Score=40.99 Aligned_cols=92 Identities=10% Similarity=0.021 Sum_probs=58.9
Q ss_pred CCCeEEEeCCccchHHHHHHHHc-CCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCL-SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~-~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
.|.++|=.|++ +|.+..+|..+ ..+.+|+.+|.+++.++.+.+.+. ..+.+.++.+|+.+.... ..
T Consensus 5 ~gK~alVTGas-~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (251)
T d1zk4a1 5 DGKVAIITGGT-LGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVG---TPDQIQFFQHDSSDEDGWTKLFDATEKAF 80 (251)
T ss_dssp TTCEEEETTTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC---CTTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC---CCCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 36677777765 45666666544 235789999999998887776653 234588899999874321 12
Q ss_pred CCCCEEEEcCCCCCCccccCCchhhc
Q 009708 405 VKCDKVLLDAPCSGLGVLSKRADLRW 430 (528)
Q Consensus 405 ~~fD~Vl~D~Pcsg~G~~~~~pd~~~ 430 (528)
+..|.++.++.....+.+...++-.|
T Consensus 81 G~iDiLVnnAg~~~~~~~~~~~~~~~ 106 (251)
T d1zk4a1 81 GPVSTLVNNAGIAVNKSVEETTTAEW 106 (251)
T ss_dssp SSCCEEEECCCCCCCCCTTTCCHHHH
T ss_pred CCceEEEeccccccccchhcccccch
Confidence 57998888765544444433333334
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=90.69 E-value=1.2 Score=40.25 Aligned_cols=83 Identities=18% Similarity=0.123 Sum_probs=58.3
Q ss_pred CCeEEEeCCccchHHHHHHHHc-CCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCL-SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 405 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~-~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~~ 405 (528)
|..+|=.|++ +|.+..+|..+ ..+.+|+.+|.+++.++.+.+.++..|.+ +.++.+|+.+.... ..+
T Consensus 2 gKValITGas-~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g~~--~~~~~~Dvs~~~~v~~~~~~~~~~~g 78 (257)
T d2rhca1 2 SEVALVTGAT-SGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVE--ADGRTCDVRSVPEIEALVAAVVERYG 78 (257)
T ss_dssp CCEEEEESCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCC--EEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred CCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCc--EEEEEeecCCHHHHHHHHHHHHHHhC
Confidence 5555777765 55666666654 23569999999999999999988887754 77889998774321 136
Q ss_pred CCCEEEEcCCCCCCcc
Q 009708 406 KCDKVLLDAPCSGLGV 421 (528)
Q Consensus 406 ~fD~Vl~D~Pcsg~G~ 421 (528)
+.|.++.++-....+.
T Consensus 79 ~iDilVnnAG~~~~~~ 94 (257)
T d2rhca1 79 PVDVLVNNAGRPGGGA 94 (257)
T ss_dssp SCSEEEECCCCCCCSC
T ss_pred CCCEEEecccccCCCC
Confidence 7899988765544343
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.47 E-value=1.6 Score=39.39 Aligned_cols=63 Identities=24% Similarity=0.103 Sum_probs=45.9
Q ss_pred CCeEEEeCCccchHHHHHHHHc----CCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccc
Q 009708 336 GQSIVDCCAAPGGKTLYMASCL----SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 399 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~----~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~ 399 (528)
|..+|=-|++. |++..+|..+ ..+.+|+.++.++..++.+.+.+...+...++.++.+|+.+.
T Consensus 6 gKvalITGas~-GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvs~~ 72 (259)
T d1oaaa_ 6 CAVCVLTGASR-GFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTE 72 (259)
T ss_dssp SEEEEESSCSS-HHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSH
T ss_pred CCEEEEeCCCC-HHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEEEccCCCH
Confidence 54555556554 5677776654 245699999999999999988887665555688899998774
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=90.25 E-value=0.64 Score=42.40 Aligned_cols=124 Identities=15% Similarity=0.061 Sum_probs=71.5
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCC-hHHHHHHHHHHHH-cCCCccEEEEcCcccccccc---------
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDIN-KGRLRILNETAKL-HQVNSVIRTIHADLRTFADN--------- 402 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s-~~~l~~~~~n~~~-~g~~~~i~~~~~D~~~~~~~--------- 402 (528)
.|.++|=.|++ +|.+..+|..+- .+.+|+.+|.+ +..++.+.+.+.. .|.. +.++.+|+.+....
T Consensus 3 ~gK~alITGas-~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~g~~--~~~~~~Dv~~~~~v~~~~~~~~~ 79 (260)
T d1x1ta1 3 KGKVAVVTGST-SGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVK--VLYDGADLSKGEAVRGLVDNAVR 79 (260)
T ss_dssp TTCEEEETTCS-SHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHTSC--EEEECCCTTSHHHHHHHHHHHHH
T ss_pred CcCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHhcCCc--EEEEECCCCCHHHHHHHHHHHHH
Confidence 46677766665 556666665442 35689999986 5677777766544 4433 77889999874321
Q ss_pred CCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcC--CCEEEEE
Q 009708 403 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKP--GGVLVYS 464 (528)
Q Consensus 403 ~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~Lkp--GG~Lvys 464 (528)
..++.|.++.++-....+.+...++-.|.. .+.-...-...+.+.+...++. +|.+|..
T Consensus 80 ~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~---~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~i 140 (260)
T d1x1ta1 80 QMGRIDILVNNAGIQHTALIEDFPTEKWDA---ILALNLSAVFHGTAAALPHMKKQGFGRIINI 140 (260)
T ss_dssp HHSCCSEEEECCCCCCCCCGGGCCHHHHHH---HHHHHTHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred HhCCCcEEEeecccccCCchhhhhHHhhhh---hhhccccccccccchhhhhHhhcCCceEeec
Confidence 125799999887655444444333333431 1111112223345555555543 5677644
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=90.16 E-value=1 Score=41.33 Aligned_cols=80 Identities=19% Similarity=0.139 Sum_probs=57.9
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCC-ccEEEEcCcccccccc---------C
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVN-SVIRTIHADLRTFADN---------S 403 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~-~~i~~~~~D~~~~~~~---------~ 403 (528)
.|.++|=.|++. |.+..+|..+- .+.+|+.+|.+++.++.+.+.++..|.. .++..+.+|+.+.... .
T Consensus 3 ~gK~alITGas~-GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 81 (274)
T d1xhla_ 3 SGKSVIITGSSN-GIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAK 81 (274)
T ss_dssp TTCEEEETTCSS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCc-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHHH
Confidence 367788888765 55666655442 3569999999999999999999888764 3588899998774321 1
Q ss_pred CCCCCEEEEcCC
Q 009708 404 TVKCDKVLLDAP 415 (528)
Q Consensus 404 ~~~fD~Vl~D~P 415 (528)
.+..|.++.++-
T Consensus 82 ~G~iDilVnnAG 93 (274)
T d1xhla_ 82 FGKIDILVNNAG 93 (274)
T ss_dssp HSCCCEEEECCC
T ss_pred cCCceEEEeecc
Confidence 257898888754
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=89.39 E-value=1.1 Score=40.52 Aligned_cols=90 Identities=16% Similarity=0.127 Sum_probs=58.9
Q ss_pred CCCeEEEeCCccchHHHHHHHHc-CCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCL-SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~-~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
.|.++|=.|++. |.+..+|+.+ ..+.+|+.+|.+++.++.+.+.+ + +.+.++.+|+.+.... ..
T Consensus 5 ~gK~alITGas~-GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 78 (244)
T d1nffa_ 5 TGKVALVSGGAR-GMGASHVRAMVAEGAKVVFGDILDEEGKAMAAEL---A--DAARYVHLDVTQPAQWKAAVDTAVTAF 78 (244)
T ss_dssp TTCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT---G--GGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---h--CcceEEEeecCCHHHHHHHHHHHHHHh
Confidence 477888888775 4566665544 23569999999998887766543 2 3477888998764321 12
Q ss_pred CCCCEEEEcCCCCCCccccCCchhhc
Q 009708 405 VKCDKVLLDAPCSGLGVLSKRADLRW 430 (528)
Q Consensus 405 ~~fD~Vl~D~Pcsg~G~~~~~pd~~~ 430 (528)
+..|.++.++.....+.+...++-.|
T Consensus 79 g~idilinnAG~~~~~~~~~~~~~~~ 104 (244)
T d1nffa_ 79 GGLHVLVNNAGILNIGTIEDYALTEW 104 (244)
T ss_dssp SCCCEEEECCCCCCCBCTTTSCHHHH
T ss_pred CCCeEEEECCcccCCCchhhCCHHHH
Confidence 57899998877655555444443344
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.16 E-value=1.7 Score=40.43 Aligned_cols=89 Identities=13% Similarity=0.056 Sum_probs=59.3
Q ss_pred CCCeEEEeCCccchHHHHHHHHc-CCCcEEEEEcCChHHHHHHHHHHHHcCC---CccEEEEcCcccccccc--------
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCL-SGQGLVYAIDINKGRLRILNETAKLHQV---NSVIRTIHADLRTFADN-------- 402 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~-~~~~~v~avD~s~~~l~~~~~n~~~~g~---~~~i~~~~~D~~~~~~~-------- 402 (528)
.|.++|=.|++. |++..+|+.+ ..+.+|+.+|.+++.++.+.+.++.... ..++.++.+|+.+....
T Consensus 11 ~gKvalITGas~-GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~ 89 (297)
T d1yxma1 11 QGQVAIVTGGAT-GIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKSTL 89 (297)
T ss_dssp TTCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHHHH
Confidence 577888777665 5666666544 3356999999999999888777765321 23478889998864321
Q ss_pred -CCCCCCEEEEcCCCCCCccccC
Q 009708 403 -STVKCDKVLLDAPCSGLGVLSK 424 (528)
Q Consensus 403 -~~~~fD~Vl~D~Pcsg~G~~~~ 424 (528)
..+..|.++.++.....+.+..
T Consensus 90 ~~~G~iDiLVnnAg~~~~~~~~~ 112 (297)
T d1yxma1 90 DTFGKINFLVNNGGGQFLSPAEH 112 (297)
T ss_dssp HHHSCCCEEEECCCCCCCCCGGG
T ss_pred HHhCCeEEEEeeccccccCchhh
Confidence 1257999988775544444433
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=89.15 E-value=1.6 Score=39.78 Aligned_cols=81 Identities=17% Similarity=0.074 Sum_probs=54.9
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCCh-HHHHHHHHHHHHcCCCccEEEEcCcccccccc---------C
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINK-GRLRILNETAKLHQVNSVIRTIHADLRTFADN---------S 403 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~-~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~ 403 (528)
.|.++|=.|++. |.+..+|..+- .+.+|+.++.+. ..++.+.+.++..|.+ +.++.+|+.+.... .
T Consensus 6 ~gK~alITGas~-GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~g~~--~~~~~~Dvt~~~~v~~~~~~~~~~ 82 (261)
T d1geea_ 6 EGKVVVITGSST-GLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGE--AIAVKGDVTVESDVINLVQSAIKE 82 (261)
T ss_dssp TTCEEEETTCSS-HHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCE--EEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCc-HHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHhcCCc--EEEEEccCCCHHHHHHHHHHHHHH
Confidence 367777777765 45666665543 346899999874 5788888888887754 67888999764221 1
Q ss_pred CCCCCEEEEcCCCCC
Q 009708 404 TVKCDKVLLDAPCSG 418 (528)
Q Consensus 404 ~~~fD~Vl~D~Pcsg 418 (528)
.++.|.++.++-...
T Consensus 83 ~G~iDiLVnnAG~~~ 97 (261)
T d1geea_ 83 FGKLDVMINNAGLEN 97 (261)
T ss_dssp HSCCCEEEECCCCCC
T ss_pred hCCCCEeeccceecC
Confidence 257898888765443
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=89.12 E-value=0.58 Score=42.28 Aligned_cols=120 Identities=17% Similarity=0.122 Sum_probs=69.0
Q ss_pred EEEeCCccchHHHHHHHHcCCC--------cEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccc---------
Q 009708 339 IVDCCAAPGGKTLYMASCLSGQ--------GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD--------- 401 (528)
Q Consensus 339 VLDl~aG~G~kt~~la~~~~~~--------~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~--------- 401 (528)
||=.|++. |.+..+|..+-.. ..|+.++.+++.++.+.+.++..|.. +.++.+|+++...
T Consensus 4 vlITGas~-GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~~--~~~~~~Dvt~~~~v~~~~~~~~ 80 (240)
T d2bd0a1 4 LLITGAGK-GIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGAL--TDTITADISDMADVRRLTTHIV 80 (240)
T ss_dssp EEEETTTS-HHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCE--EEEEECCTTSHHHHHHHHHHHH
T ss_pred EEEccCCC-HHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcCCc--EEEEEecCCCHHHHHHHHHHHH
Confidence 55566665 5666666544211 24899999999999998888877743 6788899987432
Q ss_pred cCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCc--CCCEEEEE
Q 009708 402 NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVK--PGGVLVYS 464 (528)
Q Consensus 402 ~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~Lk--pGG~Lvys 464 (528)
...+..|.++.++-....+.+...++-.|.. .+.-...-...+.+.+...++ .+|.++..
T Consensus 81 ~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~---~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~i 142 (240)
T d2bd0a1 81 ERYGHIDCLVNNAGVGRFGALSDLTEEDFDY---TMNTNLKGTFFLTQALFALMERQHSGHIFFI 142 (240)
T ss_dssp HHTSCCSEEEECCCCCCCCCGGGCCHHHHHH---HHHHHTHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHcCCcceeecccccccCCccccCCHHHHhh---cCCEeehHHHHHHHHHhHHHHhcCCCceEEE
Confidence 1135799998876554434333322222321 111111122234555555553 46777654
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=88.97 E-value=2 Score=39.49 Aligned_cols=84 Identities=14% Similarity=0.033 Sum_probs=55.9
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHH-cCCCccEEEEcCccccccc---------cC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKL-HQVNSVIRTIHADLRTFAD---------NS 403 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~-~g~~~~i~~~~~D~~~~~~---------~~ 403 (528)
.|.++|=.|++. |.+..+|..+- .+.+|+.+|.+...++.+.+.+.. .|. .+.++.+|+.+... ..
T Consensus 24 ~gK~alITGas~-GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~g~--~~~~~~~D~~~~~~v~~~~~~~~~~ 100 (294)
T d1w6ua_ 24 QGKVAFITGGGT-GLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGN--KVHAIQCDVRDPDMVQNTVSELIKV 100 (294)
T ss_dssp TTCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSS--CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCC-HHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhcCC--ceEEEEecccChHHHHHHhhhhhhh
Confidence 477888888764 56666665543 356999999999998877765543 343 36788889876432 11
Q ss_pred CCCCCEEEEcCCCCCCcc
Q 009708 404 TVKCDKVLLDAPCSGLGV 421 (528)
Q Consensus 404 ~~~fD~Vl~D~Pcsg~G~ 421 (528)
.+..|.++.++-....+.
T Consensus 101 ~g~iDilvnnAg~~~~~~ 118 (294)
T d1w6ua_ 101 AGHPNIVINNAAGNFISP 118 (294)
T ss_dssp TCSCSEEEECCCCCCCSC
T ss_pred ccccchhhhhhhhccccc
Confidence 467898887665443333
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=88.94 E-value=1.3 Score=39.94 Aligned_cols=120 Identities=16% Similarity=0.034 Sum_probs=68.9
Q ss_pred EEEeCCccchHHHHHHHHcC-CCcEEEEEc-CChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCCCC
Q 009708 339 IVDCCAAPGGKTLYMASCLS-GQGLVYAID-INKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STVKC 407 (528)
Q Consensus 339 VLDl~aG~G~kt~~la~~~~-~~~~v~avD-~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~~~f 407 (528)
||=.| |++|.+..+|..+- .+.+|+..| .++..++.+.+.++..|. ++.++.+|+.+.... ..+..
T Consensus 4 ~lITG-as~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 80 (244)
T d1edoa_ 4 VVVTG-ASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGG--QAITFGGDVSKEADVEAMMKTAIDAWGTI 80 (244)
T ss_dssp EEETT-CSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHTC--EEEEEECCTTSHHHHHHHHHHHHHHSSCC
T ss_pred EEEeC-CCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCC--cEEEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 44445 44567777776553 345787665 477888888888888774 367888999874321 13679
Q ss_pred CEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccC--cCCCEEEEE
Q 009708 408 DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLV--KPGGVLVYS 464 (528)
Q Consensus 408 D~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~L--kpGG~Lvys 464 (528)
|.++.++-....+.+...+.-.|... ++-...-...+.+.+...+ +.+|.+|..
T Consensus 81 DiLVnnAg~~~~~~~~~~~~~~~~~~---~~vNl~~~~~~~~~~~~~m~~~~~G~IVni 136 (244)
T d1edoa_ 81 DVVVNNAGITRDTLLIRMKKSQWDEV---IDLNLTGVFLCTQAATKIMMKKRKGRIINI 136 (244)
T ss_dssp SEEEECCCCCCCCCGGGCCHHHHHHH---HHHHTHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred CccccccccccccchhccchHHHHHH---HhhhhhhHHHHHHHHHHHHHHcCCcEEEEE
Confidence 99888765544443333333333211 1111112223455555544 357887754
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.58 E-value=1.5 Score=39.83 Aligned_cols=88 Identities=15% Similarity=0.026 Sum_probs=57.7
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
.|.++|=.|++.| .+..+|..+. .+.+|+.++.+++.++.+.+........ .+..+..|....... ..
T Consensus 13 ~GK~alITGassG-IG~aiA~~la~~G~~Vil~~r~~~~l~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~ 90 (269)
T d1xu9a_ 13 QGKKVIVTGASKG-IGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAA-SAHYIAGTMEDMTFAEQFVAQAGKLM 90 (269)
T ss_dssp TTCEEEESSCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCS-EEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhhhhcc-cchhhhhhhhhHHHHHHHHHHHHHHh
Confidence 4788888888765 5665555442 3569999999999999888776555433 366677776543211 12
Q ss_pred CCCCEEEEcCCCCCCccccC
Q 009708 405 VKCDKVLLDAPCSGLGVLSK 424 (528)
Q Consensus 405 ~~fD~Vl~D~Pcsg~G~~~~ 424 (528)
+..|.++.++.....+.+..
T Consensus 91 g~~~~li~nag~~~~~~~~~ 110 (269)
T d1xu9a_ 91 GGLDMLILNHITNTSLNLFH 110 (269)
T ss_dssp TSCSEEEECCCCCCCCCCCC
T ss_pred CCcccccccccccccccccc
Confidence 56898888866554444433
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=88.27 E-value=2.6 Score=37.65 Aligned_cols=128 Identities=14% Similarity=0.021 Sum_probs=71.2
Q ss_pred CCCeEEEeCCccchHHHHHHHHc-CCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCL-SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~-~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
.|.++|=.|++ +|.+..+|+.+ ..+.+|+.++.+.+.++.+ .+.++ ..+.++.+|+.+.... ..
T Consensus 4 ~gK~alItGas-~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~---~~~~~--~~~~~~~~Dls~~~~i~~~~~~i~~~~ 77 (241)
T d2a4ka1 4 SGKTILVTGAA-SGIGRAALDLFAREGASLVAVDREERLLAEA---VAALE--AEAIAVVADVSDPKAVEAVFAEALEEF 77 (241)
T ss_dssp TTCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHH---HHTCC--SSEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHH---HHHcC--CceEEEEecCCCHHHHHHHHHHHHHHh
Confidence 47778888877 55666666655 3457999999998877544 34444 3477888998764321 12
Q ss_pred CCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEE-EcCCCCch
Q 009708 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY-STCSIDPE 471 (528)
Q Consensus 405 ~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvy-sTcs~~~~ 471 (528)
++.|.++.++.-...+.+...++-.|. +.+.-...-...+.+.+...++.++.+++ ++++..+.
T Consensus 78 g~iDiLinnAg~~~~~~~~~~~~~~~~---~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss~a~~~~ 142 (241)
T d2a4ka1 78 GRLHGVAHFAGVAHSALSWNLPLEAWE---KVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGLGA 142 (241)
T ss_dssp SCCCEEEEGGGGTTTTC----CHHHHH---HHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTCCH
T ss_pred CCccEeccccccccccchhhhhccccc---cccccccccccccccccccccccccceeeccccccccc
Confidence 579999887644333333333332332 11111122223345555666666666554 44444443
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=88.21 E-value=0.74 Score=41.55 Aligned_cols=129 Identities=13% Similarity=0.005 Sum_probs=72.7
Q ss_pred CCCeEEEeCCccc-hHHHHHHHHc-CCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccc---------cC
Q 009708 335 PGQSIVDCCAAPG-GKTLYMASCL-SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD---------NS 403 (528)
Q Consensus 335 ~g~~VLDl~aG~G-~kt~~la~~~-~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~---------~~ 403 (528)
.|.+||=.|++.| |.+..+|..+ ..+.+|+.++.++...+.+++.....+... .+..|...... ..
T Consensus 4 ~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 80 (258)
T d1qsga_ 4 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDI---VLQCDVAEDASIDTMFAELGKV 80 (258)
T ss_dssp TTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHHHHHHHTTCCC---EEECCTTCHHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHhhcCCcc---eeecccchHHHHHHHHHHhhhc
Confidence 4788998888774 4444444433 235789999999888888888777766442 34444433211 11
Q ss_pred CCCCCEEEEcCCCCCCccccCCchhhccC--CHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcC
Q 009708 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNR--RLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466 (528)
Q Consensus 404 ~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~--~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTc 466 (528)
....|.++.++.....+.+...+...+.. ......-.......+.+.+...+++|+.+++.+.
T Consensus 81 ~~~~d~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~iss 145 (258)
T d1qsga_ 81 WPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSY 145 (258)
T ss_dssp CSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred ccccceEEEeecccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCcEEEEecc
Confidence 35678777765444333332222111110 0111222233444566777788888888876554
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=87.95 E-value=1 Score=41.01 Aligned_cols=81 Identities=16% Similarity=0.008 Sum_probs=52.8
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
.|.++|=.|++.| .+..+|+.+- .+.+|+.+|.+++.++.+.+ ..+ +.+.++.+|+.+.... ..
T Consensus 4 ~gK~alVTGas~G-IG~aia~~la~~Ga~V~~~~r~~~~~~~~~~---~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 77 (254)
T d1hdca_ 4 SGKTVIITGGARG-LGAEAARQAVAAGARVVLADVLDEEGAATAR---ELG--DAARYQHLDVTIEEDWQRVVAYAREEF 77 (254)
T ss_dssp CCSEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH---TTG--GGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH---HhC--CceEEEEcccCCHHHHHHHHHHHHHHc
Confidence 4778888888765 5555555442 35689999999987765543 333 3578899999864321 12
Q ss_pred CCCCEEEEcCCCCCCcc
Q 009708 405 VKCDKVLLDAPCSGLGV 421 (528)
Q Consensus 405 ~~fD~Vl~D~Pcsg~G~ 421 (528)
++.|.++.++-.+..+.
T Consensus 78 g~iDilVnnAg~~~~~~ 94 (254)
T d1hdca_ 78 GSVDGLVNNAGISTGMF 94 (254)
T ss_dssp SCCCEEEECCCCCCCSC
T ss_pred CCccEEEecCccccccc
Confidence 57898887765443333
|
| >d2oo3a1 c.66.1.59 (A:9-279) Uncharacterized protein LPG1296 {Legionella pneumophila [TaxId: 446]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: LPG1296-like domain: Uncharacterized protein LPG1296 species: Legionella pneumophila [TaxId: 446]
Probab=87.79 E-value=1.1 Score=41.28 Aligned_cols=69 Identities=16% Similarity=0.215 Sum_probs=49.2
Q ss_pred CccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---CCCCCCEEEEcCCC
Q 009708 344 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---STVKCDKVLLDAPC 416 (528)
Q Consensus 344 aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---~~~~fD~Vl~D~Pc 416 (528)
-.||+=.+ ++..+.++-+++.+|+.+.-.+.+++|+.. +.++.+.+.|....... ..++=-+|++|||+
T Consensus 89 ~YPGSP~i-a~~llR~~Drl~l~ELHp~e~~~L~~~~~~---~~~~~v~~~DG~~~l~allPP~~rRgLVLIDPpY 160 (271)
T d2oo3a1 89 YYPGSPYF-AINQLRSQDRLYLCELHPTEYNFLLKLPHF---NKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSY 160 (271)
T ss_dssp EEECHHHH-HHHHSCTTSEEEEECCSHHHHHHHTTSCCT---TSCEEEECSCHHHHHHHHCSCTTSCEEEEECCCC
T ss_pred cCCCCHHH-HHHhCCCCCceEEeecCHHHHHHHHHHhcc---CCCceEEcCchHHHHHhhCCCCCCceEEEecCCc
Confidence 45665444 334456678999999999999999877543 33589999998764321 12445699999999
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=87.60 E-value=1.9 Score=39.35 Aligned_cols=82 Identities=15% Similarity=0.095 Sum_probs=58.4
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCC-ccEEEEcCcccccccc---------C
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVN-SVIRTIHADLRTFADN---------S 403 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~-~~i~~~~~D~~~~~~~---------~ 403 (528)
.|.++|=.|++ +|.+..+|..+- .+.+|+.+|.+++.++.+.+.++..+.. ..+.++.+|+.+.... .
T Consensus 4 ~gK~alVTGas-~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 82 (272)
T d1xkqa_ 4 SNKTVIITGSS-NGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQ 82 (272)
T ss_dssp TTCEEEETTCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCcC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 36677777766 556666665442 3569999999999999999999887764 3578899998764311 1
Q ss_pred CCCCCEEEEcCCCC
Q 009708 404 TVKCDKVLLDAPCS 417 (528)
Q Consensus 404 ~~~fD~Vl~D~Pcs 417 (528)
.+..|.++.++-..
T Consensus 83 ~g~iDilvnnAG~~ 96 (272)
T d1xkqa_ 83 FGKIDVLVNNAGAA 96 (272)
T ss_dssp HSCCCEEEECCCCC
T ss_pred hCCceEEEeCCccc
Confidence 25789998875443
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=87.46 E-value=2.2 Score=38.75 Aligned_cols=78 Identities=17% Similarity=0.062 Sum_probs=53.8
Q ss_pred CCCeEEEeCCccchHHHHHHHHc-CCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCL-SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~-~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
.|.++|=.|++. |.+..+|+.+ ..+.+|+.+|.++..++.+.+.+.. .+.+.++.+|+.+.... ..
T Consensus 5 ~gKvalITGas~-GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (268)
T d2bgka1 5 QDKVAIITGGAG-GIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGS---PDVISFVHCDVTKDEDVRNLVDTTIAKH 80 (268)
T ss_dssp TTCEEEEESTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC---TTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCc-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcC---CCceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 477888888765 5666666554 3356999999999988877666543 33477888998764211 12
Q ss_pred CCCCEEEEcCCC
Q 009708 405 VKCDKVLLDAPC 416 (528)
Q Consensus 405 ~~fD~Vl~D~Pc 416 (528)
+..|.++.++-.
T Consensus 81 g~iD~lVnnAG~ 92 (268)
T d2bgka1 81 GKLDIMFGNVGV 92 (268)
T ss_dssp SCCCEEEECCCC
T ss_pred CCcceecccccc
Confidence 578999887643
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=87.27 E-value=0.45 Score=40.68 Aligned_cols=98 Identities=17% Similarity=0.117 Sum_probs=60.6
Q ss_pred CCCCCeEEEeCC--ccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccc--ccccCCCCCC
Q 009708 333 PQPGQSIVDCCA--APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT--FADNSTVKCD 408 (528)
Q Consensus 333 ~~~g~~VLDl~a--G~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~--~~~~~~~~fD 408 (528)
..+++.||=-|+ |-|..++++|+.++ .+|++..-+++..+.++ .+|.+. + +...|... .....++.+|
T Consensus 21 ~~~~~~VLV~gaaGgVG~~avQlAk~~G--a~Viat~~s~~k~~~~~----~lGad~-v-i~~~~~~~~~~~~~~~~gvd 92 (167)
T d1tt7a2 21 SPEKGSVLVTGATGGVGGIAVSMLNKRG--YDVVASTGNREAADYLK----QLGASE-V-ISREDVYDGTLKALSKQQWQ 92 (167)
T ss_dssp CGGGCCEEEESTTSHHHHHHHHHHHHHT--CCEEEEESSSSTHHHHH----HHTCSE-E-EEHHHHCSSCCCSSCCCCEE
T ss_pred CCCCCEEEEeCCcchHHHHHHHHHHHcC--CceEEEecCHHHHHHHH----hhcccc-e-EeccchhchhhhcccCCCce
Confidence 345667776553 44556778888764 68999999988877654 467764 2 12222111 1111245688
Q ss_pred EEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 409 KVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 409 ~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
.|+ |.-. | ..+..+++.|+++|++|..-+.
T Consensus 93 ~vi-d~vg---g-------------------------~~~~~~~~~l~~~G~iv~~G~~ 122 (167)
T d1tt7a2 93 GAV-DPVG---G-------------------------KQLASLLSKIQYGGSVAVSGLT 122 (167)
T ss_dssp EEE-ESCC---T-------------------------HHHHHHHTTEEEEEEEEECCCS
T ss_pred EEE-ecCc---H-------------------------HHHHHHHHHhccCceEEEeecc
Confidence 776 3322 1 1378889999999999865554
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.99 E-value=1.8 Score=38.78 Aligned_cols=80 Identities=19% Similarity=0.176 Sum_probs=52.9
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc-----CCCCCC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-----STVKCD 408 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~-----~~~~fD 408 (528)
.|.++|=.|++. |.+..+|+.+- .+.+|+.+|.++..++.+.+.. .+ +..++.|+.+.... .-++.|
T Consensus 6 ~GK~~lITGas~-GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~-----~~-~~~~~~Dv~d~~~v~~~~~~~g~iD 78 (244)
T d1pr9a_ 6 AGRRVLVTGAGK-GIGRGTVQALHATGARVVAVSRTQADLDSLVREC-----PG-IEPVCVDLGDWEATERALGSVGPVD 78 (244)
T ss_dssp TTCEEEEESTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS-----TT-CEEEECCTTCHHHHHHHHTTCCCCC
T ss_pred CCCEEEEeCCCC-HHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhc-----CC-CeEEEEeCCCHHHHHHHHHHhCCce
Confidence 478899888775 56666666542 3569999999998887665432 22 56778888764221 135789
Q ss_pred EEEEcCCCCCCcc
Q 009708 409 KVLLDAPCSGLGV 421 (528)
Q Consensus 409 ~Vl~D~Pcsg~G~ 421 (528)
.++.++.....+.
T Consensus 79 ilVnnAg~~~~~~ 91 (244)
T d1pr9a_ 79 LLVNNAAVALLQP 91 (244)
T ss_dssp EEEECCCCCCCBC
T ss_pred EEEeccccccccc
Confidence 8888765544333
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=86.90 E-value=0.48 Score=45.22 Aligned_cols=121 Identities=17% Similarity=0.120 Sum_probs=61.5
Q ss_pred eEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChH-----HHHHHHHHHHHcCCCccEEEEcCccccccccC----CCCC
Q 009708 338 SIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKG-----RLRILNETAKLHQVNSVIRTIHADLRTFADNS----TVKC 407 (528)
Q Consensus 338 ~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~-----~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~----~~~f 407 (528)
+||=.| |+|-.+.+++..+- .+-+|+++|.... +++.+...... ...+++++.+|+++..... ...+
T Consensus 3 ~vLITG-atGfiGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 79 (357)
T d1db3a_ 3 VALITG-VTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHT--CNPKFHLHYGDLSDTSNLTRILREVQP 79 (357)
T ss_dssp EEEEET-TTSHHHHHHHHHHHHTTCEEEEECC-----------------------CCEEECCCCSSCHHHHHHHHHHHCC
T ss_pred EEEEeC-CCcHHHHHHHHHHHHCcCEEEEEECCCcccchhhHHHHHhhhhh--cCCCeEEEEeecCCHHHHHHHHhccCC
Confidence 444555 45888888877653 3458999998433 33332222111 1234889999987654211 2368
Q ss_pred CEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhcc-CcCCCEEEE-EcCCC
Q 009708 408 DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLL-VKPGGVLVY-STCSI 468 (528)
Q Consensus 408 D~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~-LkpGG~Lvy-sTcs~ 468 (528)
|.|+.=+-+++.+.-..+|+.- ...-..-...+|+.|.+. ++...++|| |||++
T Consensus 80 d~v~h~aa~~~~~~~~~~~~~~-------~~~Nv~gt~nllea~~~~~~~~~~r~i~~SS~~v 135 (357)
T d1db3a_ 80 DEVYNLGAMSHVAVSFESPEYT-------ADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSEL 135 (357)
T ss_dssp SEEEECCCCCTTTTTTSCHHHH-------HHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGG
T ss_pred CEEEEeecccccchhhhCHHHH-------HHHHHHHHHHHHHHHHHhCCCCCcEEEEEEchhh
Confidence 9998755554444323333221 122223344567777654 344455665 77764
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=85.74 E-value=2.1 Score=38.51 Aligned_cols=119 Identities=17% Similarity=0.157 Sum_probs=67.8
Q ss_pred CCCeEEEeCCccchHHHHHHHHc-CCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCL-SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~-~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
.|.++|=.|++ +|.+..+|+.+ ..+.+|+.+|.+++..+.+++ .+ ..++..|+.+.... ..
T Consensus 4 ~GK~alITGas-~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~----~~----~~~~~~Dv~~~~~v~~~~~~~~~~~ 74 (248)
T d2d1ya1 4 AGKGVLVTGGA-RGIGRAIAQAFAREGALVALCDLRPEGKEVAEA----IG----GAFFQVDLEDERERVRFVEEAAYAL 74 (248)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESSTTHHHHHHH----HT----CEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----cC----CeEEEEeCCCHHHHHHHHHHHHHhc
Confidence 47788888865 45666666554 335799999999887665432 23 24677888764211 12
Q ss_pred CCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcC--CCEEEEEc
Q 009708 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKP--GGVLVYST 465 (528)
Q Consensus 405 ~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~Lkp--GG~LvysT 465 (528)
++.|.++.++-....+.+...++-.|.. .+.-...-...+.+.+...++. +|.+|..+
T Consensus 75 G~iDiLVnnAG~~~~~~~~~~~~e~~~~---~~~vNl~g~~~~~~~~~p~m~~~~~G~Ii~is 134 (248)
T d2d1ya1 75 GRVDVLVNNAAIAAPGSALTVRLPEWRR---VLEVNLTAPMHLSALAAREMRKVGGGAIVNVA 134 (248)
T ss_dssp SCCCEEEECCCCCCCBCTTTCCHHHHHH---HHHHHTHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred CCCCeEEEeCcCCCCCChhhCCHHHHHH---HHHhhhhhHhhhhhhhcccccccccccccccc
Confidence 5789998877655444433333333321 1111112223455666666543 57777543
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.41 E-value=1.8 Score=39.08 Aligned_cols=76 Identities=17% Similarity=0.106 Sum_probs=51.5
Q ss_pred CCCeEEEeCCccchHHHHHHHHc-CCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCL-SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~-~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
.|.++|=.|++. |.+..+|..+ ..+.+|+.+|.+++.++.+.+.. .+ +.++.+|+.+.... ..
T Consensus 5 ~GK~alITGas~-GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~-----~~-~~~~~~Dvs~~~~v~~~~~~~~~~~ 77 (250)
T d1ydea1 5 AGKVVVVTGGGR-GIGAGIVRAFVNSGARVVICDKDESGGRALEQEL-----PG-AVFILCDVTQEDDVKTLVSETIRRF 77 (250)
T ss_dssp TTCEEEEETCSS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC-----TT-EEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc-----CC-CeEEEccCCCHHHHHHHHHHHHHhc
Confidence 477888888765 5666666544 23569999999998887665432 23 67788998774321 12
Q ss_pred CCCCEEEEcCCCC
Q 009708 405 VKCDKVLLDAPCS 417 (528)
Q Consensus 405 ~~fD~Vl~D~Pcs 417 (528)
++.|.++.++-..
T Consensus 78 g~iDilVnnAG~~ 90 (250)
T d1ydea1 78 GRLDCVVNNAGHH 90 (250)
T ss_dssp SCCCEEEECCCCC
T ss_pred CCCCEEEeccccc
Confidence 5789999877543
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=85.22 E-value=7.5 Score=35.92 Aligned_cols=83 Identities=12% Similarity=-0.029 Sum_probs=56.5
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHc-CCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC--CCCCCE
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCL-SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS--TVKCDK 409 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~-~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~--~~~fD~ 409 (528)
.++|.+||=.|+. |-.+.+++..+ ..+.+|+++..+.......+.............++.+|+.+..... -...|.
T Consensus 8 ~~~gk~VlVTG~s-GfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 86 (342)
T d1y1pa1 8 LPEGSLVLVTGAN-GFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAG 86 (342)
T ss_dssp SCTTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSE
T ss_pred CCCcCEEEEECCC-CHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcccchh
Confidence 4568899988876 99999888754 3345899988888887777666555544444566778887643221 245788
Q ss_pred EEEcCCC
Q 009708 410 VLLDAPC 416 (528)
Q Consensus 410 Vl~D~Pc 416 (528)
|+..+-.
T Consensus 87 v~~~a~~ 93 (342)
T d1y1pa1 87 VAHIASV 93 (342)
T ss_dssp EEECCCC
T ss_pred hhhhccc
Confidence 8764433
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=84.98 E-value=2.2 Score=38.65 Aligned_cols=80 Identities=16% Similarity=0.065 Sum_probs=57.1
Q ss_pred CCCeEEEeCCccchHHHHHHHHc-CCCcEEEEEcCChHHHHHHHHHHHHcCCC-ccEEEEcCcccccccc---------C
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCL-SGQGLVYAIDINKGRLRILNETAKLHQVN-SVIRTIHADLRTFADN---------S 403 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~-~~~~~v~avD~s~~~l~~~~~n~~~~g~~-~~i~~~~~D~~~~~~~---------~ 403 (528)
.|..+|=.|++ +|.+..+|..+ ..+.+|+.+|.+++.++.+.+.+...+.. .++.++.+|+.+.... .
T Consensus 4 ~gKvalVTGas-~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~ 82 (264)
T d1spxa_ 4 AEKVAIITGSS-NGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGK 82 (264)
T ss_dssp TTCEEEETTTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCcC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 36667777766 56666666554 34579999999999999999988887754 3588899998764321 1
Q ss_pred CCCCCEEEEcCC
Q 009708 404 TVKCDKVLLDAP 415 (528)
Q Consensus 404 ~~~fD~Vl~D~P 415 (528)
.++.|.++.++-
T Consensus 83 ~g~iDilvnnAG 94 (264)
T d1spxa_ 83 FGKLDILVNNAG 94 (264)
T ss_dssp HSCCCEEEECCC
T ss_pred hCCCCEeecccc
Confidence 257898887643
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=84.79 E-value=2.4 Score=38.30 Aligned_cols=82 Identities=18% Similarity=0.063 Sum_probs=53.7
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
.|.++|=.|++. |.+..+|..+- .+.+|+.+|.+++.++.+.+. .|- .+..+.+|+.+.... ..
T Consensus 4 ~gK~alVTGas~-GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~---~~~--~~~~~~~Dvt~~~~v~~~~~~~~~~~ 77 (256)
T d1k2wa_ 4 DGKTALITGSAR-GIGRAFAEAYVREGARVAIADINLEAARATAAE---IGP--AACAIALDVTDQASIDRCVAELLDRW 77 (256)
T ss_dssp TTEEEEEETCSS-HHHHHHHHHHHHTTEEEEEEESCHHHHHHHHHH---HCT--TEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH---hCC--ceEEEEeeCCCHHHHHHHHHHHHHHh
Confidence 366788888664 56666665442 356899999998887766544 343 367888998764321 12
Q ss_pred CCCCEEEEcCCCCCCccc
Q 009708 405 VKCDKVLLDAPCSGLGVL 422 (528)
Q Consensus 405 ~~fD~Vl~D~Pcsg~G~~ 422 (528)
+..|.++.++-....+.+
T Consensus 78 g~iDilVnnAg~~~~~~~ 95 (256)
T d1k2wa_ 78 GSIDILVNNAALFDLAPI 95 (256)
T ss_dssp SCCCEEEECCCCCCCCCG
T ss_pred CCccEEEeeccccccccc
Confidence 579999887665444433
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=84.55 E-value=3.1 Score=37.28 Aligned_cols=81 Identities=15% Similarity=0.059 Sum_probs=51.5
Q ss_pred CCCeEEEeCCccchHHHHHHHHc-CCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCL-SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~-~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
.|..+|=.|++ +|.+..+|+.+ ..+.+|+.+|.++.. .++..++..|- ++..+.+|+.+.... ..
T Consensus 4 ~gKvalVTGas-~GIG~aia~~la~~Ga~V~~~~~~~~~--~~~~~~~~~g~--~~~~~~~Dvs~~~~v~~~~~~~~~~~ 78 (247)
T d2ew8a1 4 KDKLAVITGGA-NGIGRAIAERFAVEGADIAIADLVPAP--EAEAAIRNLGR--RVLTVKCDVSQPGDVEAFGKQVISTF 78 (247)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESSCCH--HHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCchH--HHHHHHHHcCC--cEEEEEeeCCCHHHHHHHHHHHHHHc
Confidence 36777877765 45666666554 235689999998753 34445566664 377889999764321 12
Q ss_pred CCCCEEEEcCCCCCCc
Q 009708 405 VKCDKVLLDAPCSGLG 420 (528)
Q Consensus 405 ~~fD~Vl~D~Pcsg~G 420 (528)
++.|.++.++-....+
T Consensus 79 G~iDilVnnAG~~~~~ 94 (247)
T d2ew8a1 79 GRCDILVNNAGIYPLI 94 (247)
T ss_dssp SCCCEEEECCCCCCCC
T ss_pred CCCCEEEECCCCCCCC
Confidence 5799888876554333
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=83.64 E-value=0.84 Score=41.30 Aligned_cols=124 Identities=13% Similarity=-0.007 Sum_probs=70.5
Q ss_pred CCCeEEEeCCccc-hHHHHHHHHc-CCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------C
Q 009708 335 PGQSIVDCCAAPG-GKTLYMASCL-SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------S 403 (528)
Q Consensus 335 ~g~~VLDl~aG~G-~kt~~la~~~-~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~ 403 (528)
.|.++|=.|++.+ |.+..+|+.+ ..+.+|+..+.++...+.+++.....+. ..++.+|+.+.... .
T Consensus 7 ~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~~---~~~~~~D~~~~~~v~~~~~~~~~~ 83 (256)
T d1ulua_ 7 SGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALGG---ALLFRADVTQDEELDALFAGVKEA 83 (256)
T ss_dssp TTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTTC---CEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHhhhccCc---ccccccccCCHHHHHHHHHHHHHh
Confidence 4788999998663 4555555443 2356899999998887777776666542 45678888764211 1
Q ss_pred CCCCCEEEEcCCCCCC-ccccCCchhhccCCHHHHHH----HHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 404 TVKCDKVLLDAPCSGL-GVLSKRADLRWNRRLEDMEE----LKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 404 ~~~fD~Vl~D~Pcsg~-G~~~~~pd~~~~~~~~~~~~----l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
.+..|.++.++-.... ....... ..+.++... ...-...+.+.+..+++.+|.+|..+
T Consensus 84 ~g~iDilVnnag~~~~~~~~~~~~----~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~Iv~is 146 (256)
T d1ulua_ 84 FGGLDYLVHAIAFAPREAMEGRYI----DTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLT 146 (256)
T ss_dssp HSSEEEEEECCCCCCHHHHSSCGG----GCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEE
T ss_pred cCCceEEEeccccccccccccchh----hhhhhhhhHhhhhhHHHHHHHHHHHHHHhccCCEEEEEe
Confidence 2568877765433211 0000111 112222221 11223345667778888889887554
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=83.53 E-value=2.4 Score=38.22 Aligned_cols=83 Identities=13% Similarity=0.075 Sum_probs=55.2
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHH-HHcCCCccEEEEcCccccccc---------cC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETA-KLHQVNSVIRTIHADLRTFAD---------NS 403 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~-~~~g~~~~i~~~~~D~~~~~~---------~~ 403 (528)
.|.++|=.|++ +|.+..+|+.+- .+.+|+.+|.++..+..+.+.+ +..|.+ +.++.+|+.+... ..
T Consensus 8 ~gK~alITGas-~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~g~~--~~~~~~Dv~~~~~v~~~~~~~~~~ 84 (260)
T d1h5qa_ 8 VNKTIIVTGGN-RGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVK--TKAYQCDVSNTDIVTKTIQQIDAD 84 (260)
T ss_dssp TTEEEEEETTT-SHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHTCC--EEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCc--eEEEEccCCCHHHHHHHHHHHHHH
Confidence 36778888865 566766666542 3568999999988877665554 445543 6788999876431 11
Q ss_pred CCCCCEEEEcCCCCCCc
Q 009708 404 TVKCDKVLLDAPCSGLG 420 (528)
Q Consensus 404 ~~~fD~Vl~D~Pcsg~G 420 (528)
.+..|.++.++..+..+
T Consensus 85 ~g~iDilVnnAg~~~~~ 101 (260)
T d1h5qa_ 85 LGPISGLIANAGVSVVK 101 (260)
T ss_dssp SCSEEEEEECCCCCCCS
T ss_pred hCCCcEecccccccccC
Confidence 35789888876554333
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=83.32 E-value=3.2 Score=34.46 Aligned_cols=106 Identities=16% Similarity=0.149 Sum_probs=60.0
Q ss_pred eEEEeCCccchHHHHHHHHcC---CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcC
Q 009708 338 SIVDCCAAPGGKTLYMASCLS---GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDA 414 (528)
Q Consensus 338 ~VLDl~aG~G~kt~~la~~~~---~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~ 414 (528)
+|+=+||| ..+..+|..+. ...+|+++|.++..++.+++ .|..+. .. .+..... ....|+|++-.
T Consensus 3 ~I~IIG~G--~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~----~~~~~~--~~-~~~~~~~---~~~~dlIila~ 70 (171)
T d2g5ca2 3 NVLIVGVG--FMGGSFAKSLRRSGFKGKIYGYDINPESISKAVD----LGIIDE--GT-TSIAKVE---DFSPDFVMLSS 70 (171)
T ss_dssp EEEEESCS--HHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHH----TTSCSE--EE-SCGGGGG---GTCCSEEEECS
T ss_pred EEEEEccC--HHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHH----hhcchh--hh-hhhhhhh---ccccccccccC
Confidence 46667775 44444443332 23489999999999877654 344321 11 2222211 13579999866
Q ss_pred CCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHHHh
Q 009708 415 PCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLL 482 (528)
Q Consensus 415 Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~l~ 482 (528)
|- ..+ .++++....+++++ .++..+||.-..--+ .+...+.
T Consensus 71 p~------------------~~~-------~~vl~~l~~~~~~~-~ii~d~~s~k~~~~~-~~~~~~~ 111 (171)
T d2g5ca2 71 PV------------------RTF-------REIAKKLSYILSED-ATVTDQGSVKGKLVY-DLENILG 111 (171)
T ss_dssp CH------------------HHH-------HHHHHHHHHHSCTT-CEEEECCSCCTHHHH-HHHHHHG
T ss_pred Cc------------------hhh-------hhhhhhhhcccccc-ccccccccccHHHHH-HHHHhhc
Confidence 64 222 23466777778865 577788887554333 3344444
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=81.74 E-value=4.1 Score=33.63 Aligned_cols=93 Identities=15% Similarity=0.109 Sum_probs=52.9
Q ss_pred EEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcCCCC
Q 009708 339 IVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCS 417 (528)
Q Consensus 339 VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~Pcs 417 (528)
|.=+|+ |..+..+|..+. .+-+|+++|.+++.++.+++ .|.-+ ....+.. . -...|+|++-.|.
T Consensus 3 I~iIG~--G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~----~~~~~---~~~~~~~-~----~~~~DiIilavp~- 67 (165)
T d2f1ka2 3 IGVVGL--GLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVE----RQLVD---EAGQDLS-L----LQTAKIIFLCTPI- 67 (165)
T ss_dssp EEEECC--SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH----TTSCS---EEESCGG-G----GTTCSEEEECSCH-
T ss_pred EEEEee--cHHHHHHHHHHHHCCCEEEEEECCchHHHHHHH----hhccc---eeeeecc-c----ccccccccccCcH-
Confidence 444555 445444444332 34589999999988776543 44322 1122221 1 1458999986553
Q ss_pred CCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCch
Q 009708 418 GLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPE 471 (528)
Q Consensus 418 g~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~ 471 (528)
..+ .+++++....++++- +|..+.+....
T Consensus 68 -----------------~~~-------~~vl~~l~~~l~~~~-iv~~~~s~~~~ 96 (165)
T d2f1ka2 68 -----------------QLI-------LPTLEKLIPHLSPTA-IVTDVASVKTA 96 (165)
T ss_dssp -----------------HHH-------HHHHHHHGGGSCTTC-EEEECCSCCHH
T ss_pred -----------------hhh-------hhhhhhhhhhccccc-ceeeccccchH
Confidence 222 234777788888765 55566666443
|
| >d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Erythromycin synthase, eryAI, 1st ketoreductase module species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=80.87 E-value=4.6 Score=35.98 Aligned_cols=88 Identities=13% Similarity=0.066 Sum_probs=52.1
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHcCCC--cEEEEEcC---ChHHHHHHHHHHHHcCCCccEEEEcCcccccccc-----
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQ--GLVYAIDI---NKGRLRILNETAKLHQVNSVIRTIHADLRTFADN----- 402 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~~~~--~~v~avD~---s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~----- 402 (528)
.+|+.+||=.| |+||++..++..+-.. .+|+-+-. +.+..+.+.+.++..|. .+.++.+|+.+....
T Consensus 6 ~~p~gt~lVTG-gs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~--~v~~~~~Dv~d~~~~~~~~~ 82 (259)
T d2fr1a1 6 WKPTGTVLVTG-GTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGA--RTTVAACDVTDRESVRELLG 82 (259)
T ss_dssp CCCCSEEEEET-TTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTC--EEEEEECCTTCHHHHHHHHH
T ss_pred cCCcCEEEEEC-CCcHHHHHHHHHHHHCCCCEEEEEeCCccCHHHHHHHHHHHHhccc--cccccccccchHHHHHHhhc
Confidence 35677899888 4667777776655322 25665533 33444555555566664 388899998764211
Q ss_pred ---CCCCCCEEEEcCCCCCCcccc
Q 009708 403 ---STVKCDKVLLDAPCSGLGVLS 423 (528)
Q Consensus 403 ---~~~~fD~Vl~D~Pcsg~G~~~ 423 (528)
.....|.|+.++.....+.+.
T Consensus 83 ~i~~~~~i~~vv~~ag~~~~~~~~ 106 (259)
T d2fr1a1 83 GIGDDVPLSAVFHAAATLDDGTVD 106 (259)
T ss_dssp TSCTTSCEEEEEECCCCCCCCCGG
T ss_pred cccccccccccccccccccccccc
Confidence 123577888776654444433
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=80.82 E-value=6 Score=35.09 Aligned_cols=79 Identities=19% Similarity=0.101 Sum_probs=51.2
Q ss_pred CCCeEEEeCCccchHHHHHHHHc-CCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCL-SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~-~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
.|.++|=.|++.| .+..+|+.+ ..+.+|+.+|.+++.++.+.+. .+ +..+.+|+.+.... ..
T Consensus 4 ~gK~~lITGas~G-IG~aia~~l~~~G~~V~~~~r~~~~l~~~~~~---~~----~~~~~~Dv~~~~~v~~~~~~~~~~~ 75 (242)
T d1ulsa_ 4 KDKAVLITGAAHG-IGRATLELFAKEGARLVACDIEEGPLREAAEA---VG----AHPVVMDVADPASVERGFAEALAHL 75 (242)
T ss_dssp TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT---TT----CEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH---cC----CeEEEEecCCHHHHHHHHHHHHHhc
Confidence 3677888887754 666666554 3356999999999888766542 22 45678898764321 12
Q ss_pred CCCCEEEEcCCCCCCcc
Q 009708 405 VKCDKVLLDAPCSGLGV 421 (528)
Q Consensus 405 ~~fD~Vl~D~Pcsg~G~ 421 (528)
+..|.++.++-.+..+.
T Consensus 76 g~iDilVnnAG~~~~~~ 92 (242)
T d1ulsa_ 76 GRLDGVVHYAGITRDNF 92 (242)
T ss_dssp SSCCEEEECCCCCCCCC
T ss_pred CCceEEEECCcccccCc
Confidence 57998888765443333
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=80.27 E-value=3.3 Score=37.00 Aligned_cols=80 Identities=16% Similarity=0.131 Sum_probs=52.4
Q ss_pred CCCeEEEeCCccchHHHHHHHHc-CCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc-----CCCCCC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCL-SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-----STVKCD 408 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~-~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~-----~~~~fD 408 (528)
.|.++|=.|++. |.+..+++.+ ..+.+|+.+|.+++.++.+.+.. .+ +..++.|+.+.... .-++.|
T Consensus 4 ~GK~alITGas~-GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~-----~~-~~~~~~Dv~~~~~v~~~~~~~g~iD 76 (242)
T d1cyda_ 4 SGLRALVTGAGK-GIGRDTVKALHASGAKVVAVTRTNSDLVSLAKEC-----PG-IEPVCVDLGDWDATEKALGGIGPVD 76 (242)
T ss_dssp TTCEEEEESTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS-----TT-CEEEECCTTCHHHHHHHHTTCCCCS
T ss_pred CCCEEEEeCCCc-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc-----CC-CeEEEEeCCCHHHHHHHHHHcCCCe
Confidence 477888888665 5666666544 34579999999998876665432 22 56778888764321 135789
Q ss_pred EEEEcCCCCCCcc
Q 009708 409 KVLLDAPCSGLGV 421 (528)
Q Consensus 409 ~Vl~D~Pcsg~G~ 421 (528)
.++.++-....+.
T Consensus 77 ilVnnAg~~~~~~ 89 (242)
T d1cyda_ 77 LLVNNAALVIMQP 89 (242)
T ss_dssp EEEECCCCCCCBC
T ss_pred EEEECCccccchh
Confidence 9888765544333
|