Citrus Sinensis ID: 009713

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------53

MSGQTRKKIQKKMKIRGYGLRMDALDEILSFVNRFPDAEDEAIDLLLDQFEHESSLKSSIIDKESVNRVTSVLLQAEAAAEGDSGSASNHSAIRVIDAFLVPKFRYDSIKKHFYQHAGSLPIHGEASAKAALYRDRFLLLFQRVSRDQHFSRPSFDVVNSEFGSCEISTIQSLVGQTGRRWVMGVISQLEDGHFYLEDLAASVEIDLSKAKITTGFFTENTIVVAEGEMLVDGIFQVITCGFPPLEDRDQSLKLLAGYDFFGGGTLKKEDTLRLADLEKRAANDMFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSRFLFIPGPDDAGPSTVLPRCALPKYLTEELQKYIPNAIFSSNPCRIKFYTQEIVFFRQDLLYRMRRSCLIPPSREETDDPFEHLVATITHQSHLCPLPLTVQPIIWNYDHSLHLYPTPHAIVLADKSEQKAFKYTGITCFNPGSFSSDSTFVAYRPCTQEVEFSAL

ccHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHccccccccccccEEEEcccccccccccccccEEccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccEEHHHHHcccccEEEEEEEEEcccccEEEEEcccEEEEEccccccccccccccEEEEEEEEEEEccEEEEEEEccccccccHHHHHHcccccccccccccHHHHHHHHHHHHHccccEEEEEEccccccHHHHHHHHHHHccccccccccEEEEEEccccccccccccccccHHHHHHHHHHHHHHccccccccEEEEEEccccccccccccccccccHHHHHHHHccccccEEEEccEEEEEccEEEEEEcHHHHHHHHHcccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccEEEEcccccccEEEEccEEEEcccccccccEEEEEEcccccEEEccc

ccHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHcccccccccHHHEEEEEcccccccEEEcccccEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHcHccccccccccccccccEEEEEHHHHccccccEEEEEEEEEcccccEEEEccccEEEEEcccccccccEEcccEEEEEEEEEEEccEEEEEEccccccccHHHHHHHHccccccccccccHHHHHHHHHHHHcccccEEEEEEccEcccHHHHHHHHHHHHcccccccccEEEEEEccccccccccccccHHHHHHHHHHHHHHHHHccHHHcccEEEEEcccccccccccccccccHHHHHHHHHHHcccEEEEccccEEEEcccEEEEEHHHHHHHHHHcccccccccccccHHHHHHHHHHHcccccccccccccEEccHHHHEEEcccccEEEEEcccccEEEEEccEEEEcccccccccEEEEEEccccEEEcccc

MSGQTRKKIQKKMKIRGYGLRMDALDEILSFvnrfpdaeDEAIDLLLDQFEhesslkssiidkesvNRVTSVLLQAEAaaegdsgsasnhsAIRVIDAflvpkfrydsIKKHFyqhagslpihgeASAKAALYRDRFLLLFQRvsrdqhfsrpsfdvvnsefgsceiSTIQSLVGQTGRRWVMGVISQLEDGHFYLEDLAASVEIDlskakittgfftenTIVVAEGEMLVDGIFQVItcgfppledrDQSLKLLAgydffgggtlkkedTLRLADLEKRAANDMFVILSDiwldneevMGKLEVVLDGFESVEVVPSLFVFMgnfcshpcnlsfhsFSSLRLQFGKLGQmiaahprlkehsrflfipgpddagpstvlprcalpkYLTEELQKYipnaifssnpcrikfyTQEIVFFRQDLLYRMRrsclippsreetddpFEHLVATIThqshlcplpltvqpiiwnydhslhlyptphaiVLADKSEQKAFkytgitcfnpgsfssdstfvayrpctqevefsal

msgqtrkkiqkkmkirgyglRMDALDEILSFVNRFPDAEDEAIDLLLDQFEHESSlkssiidkesvnRVTSVLLQAEAAaegdsgsasnhsaIRVIDAFLVPKFRYDSIKKHFYQHAGSLPIHGEASAKAALYRDRFLLLFQRVSRDQHFSRPSFDVVNSEFGSCEISTIQSLVGQTGRRWVMGVISQLEDGHFYLEDLAASVEIDLSKAKITTGFFTENTIVVAEGEMLVDGIFQVITCGFPPLEDRDQSLKLLAGYDFfgggtlkkedTLRLADLEKRAANDMFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSRFLFIPGPDDAGPSTVLPRCALPKYLTEELQKYIPNAIFSSNPCRIKFYTQEIVFFRQDLLYRMRRSCLIPPSREETDDPFEHLVATITHQSHLCPLPLTVQPIIWNYDHSLHLYPTPHAIVLADKSEQKAFKYTGITCFNPGSFSSDSTFVAYRPCTQEVEFSAL

MSGQTRKKIQKKMKIRGYGLRMDALDEILSFVNRFPdaedeaidllldQFEHESSLKSSIIDKESVNRVTSVLLQaeaaaegdsgsasNHSAIRVIDAFLVPKFRYDSIKKHFYQHAGSLPIHGEASAKAALYRDRFLLLFQRVSRDQHFSRPSFDVVNSEFGSCEISTIQSLVGQTGRRWVMGVISQLEDGHFYLEDLAASVEIDLSKAKITTGFFTENTIVVAEGEMLVDGIFQVITCGFPPLEDRDQSLKLLAGYDFFGGGTLKKEDTLRLADLEKRAANDMFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSRFLFIPGPDDAGPSTVLPRCALPKYLTEELQKYIPNAIFSSNPCRIKFYTQEIVFFRQDLLYRMRRSCLIPPSREETDDPFEHLVATITHQSHLCPLPLTVQPIIWNYDHSLHLYPTPHAIVLADKSEQKAFKYTGITCFNPGSFSSDSTFVAYRPCTQEVEFSAL

*************KIRGYGLRMDALDEILSFVNRFPDAEDEAIDLLLDQF*********************V*******************AIRVIDAFLVPKFRYDSIKKHFYQHAGSLPIHGEASAKAALYRDRFLLLFQRVSRDQHFSRPSFDVVNSEFGSCEISTIQSLVGQTGRRWVMGVISQLEDGHFYLEDLAASVEIDLSKAKITTGFFTENTIVVAEGEMLVDGIFQVITCGFPPLEDRDQSLKLLAGYDFFGGGTLKKEDTLRLADLEKRAANDMFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSRFLFIPGPDDAGPSTVLPRCALPKYLTEELQKYIPNAIFSSNPCRIKFYTQEIVFFRQDLLYRMRRSCLIP*******DPFEHLVATITHQSHLCPLPLTVQPIIWNYDHSLHLYPTPHAIVLADKSEQKAFKYTGITCFNPGSFSSDSTFVAYRPCT********

*****RK**QKKMKIRGYGLRMDALDEILSFVNRFPDAEDEAIDLLLDQF****************************************SAIRVIDAFLVPKFRYDSIKKHFY**********EASAKAALYRDRFLLLFQRVSRDQ*******************STIQSLVGQTGRRWVMGVISQLEDGHFYLEDLAASVEIDLSKAKITTGFFTENTIVVAEGEMLVDGIFQVITCGFPPLEDRDQSLKLLAGYDFFGGGTL*************RAANDMFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSRFLFIPGPDDAGPSTVLPRCALPKYLTEELQKYIPNAIFSSNPCRIKFYTQEIVFFRQDLLYRMRRSCL************EHLVATITHQSHLCPLPLTVQPIIWNYDHSLHLYPTPHAIVLADKSEQKAFKYTGITCFNPGSFSSDSTFVAYRPCTQEVEFS*L

************MKIRGYGLRMDALDEILSFVNRFPDAEDEAIDLLLDQFEHESSLKSSIIDKESVNRVTSVLLQAE***********NHSAIRVIDAFLVPKFRYDSIKKHFYQHAGSLPIHGEASAKAALYRDRFLLLFQRVSRDQHFSRPSFDVVNSEFGSCEISTIQSLVGQTGRRWVMGVISQLEDGHFYLEDLAASVEIDLSKAKITTGFFTENTIVVAEGEMLVDGIFQVITCGFPPLEDRDQSLKLLAGYDFFGGGTLKKEDTLRLADLEKRAANDMFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSRFLFIPGPDDAGPSTVLPRCALPKYLTEELQKYIPNAIFSSNPCRIKFYTQEIVFFRQDLLYRMRRSCLIPPSREETDDPFEHLVATITHQSHLCPLPLTVQPIIWNYDHSLHLYPTPHAIVLADKSEQKAFKYTGITCFNPGSFSSDSTFVAYRPCTQEVEFSAL

*SGQTRKKIQKKMKIRGYGLRMDALDEILSFVNRFPDAEDEAIDLLLDQFEHESSLKSSIIDKESVNRVTSVLLQAEAAAEGDSGSASNHSAIRVIDAFLVPKFRYDSIKKHFYQHAGSLPIHGEASAKAALYRDRFLLLFQRVSRDQHFSRPSFDVVNSEFGSCEISTIQSLVGQTGRRWVMGVISQLEDGHFYLEDLAASVEIDLSKAKITTGFFTENTIVVAEGEMLVDGIFQVITCGFPPLEDRDQSLKLLAGYDFFGGGTLKKEDTLRLADLEKRAANDMFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSRFLFIPGPDDAGPSTVLPRCALPKYLTEELQKYIPNAIFSSNPCRIKFYTQEIVFFRQDLLYRMRRSCLIPPSREETDDPFEHLVATITHQSHLCPLPLTVQPIIWNYDHSLHLYPTPHAIVLADKSEQKAFKYTGITCFNPGSFSSDSTFVAYRPCTQEVE****

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		528	2.2.26 [Sep-21-2011]
Q54Y85		676	DNA polymerase epsilon su	yes	no	0.952	0.744	0.345	6e-88
Q5ZKQ6		527	DNA polymerase epsilon su	yes	no	0.954	0.956	0.346	1e-83
A7YWS7		527	DNA polymerase epsilon su	yes	no	0.952	0.954	0.353	4e-82
O54956		527	DNA polymerase epsilon su	yes	no	0.954	0.956	0.353	3e-81
P56282		527	DNA polymerase epsilon su	yes	no	0.956	0.958	0.341	3e-80
P0CN24		541	DNA polymerase epsilon su	yes	no	0.835	0.815	0.349	1e-73
P0CN25		541	DNA polymerase epsilon su	N/A	no	0.835	0.815	0.349	1e-73
O94263		594	DNA polymerase epsilon su	yes	no	0.780	0.693	0.334	2e-66
Q19196		534	Probable DNA polymerase e	yes	no	0.926	0.915	0.290	1e-49
Q6FSK8		719	DNA polymerase epsilon su	yes	no	0.810	0.595	0.272	2e-44

>sp\|Q54Y85\|DPOE2_DICDI DNA polymerase epsilon subunit 2 OS=Dictyostelium discoideum GN=pole2 PE=3 SV=1	Back alignment and function desciption

 Score =  325 bits (832), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 184/532 (34%), Positives = 294/532 (55%), Gaps = 29/532 (5%)

Query: 1   MSGQTRKKIQKKMKIRGYGLRMDALDEILSFVNRFPDAEDEAIDLLLDQFEHESSLKSSI 60
           M  Q +K+I K   + G+ ++ DA+  I++ +        + ID LL   +    L++  
Sbjct: 1   MDIQWKKQITKSFSLTGFSIKADAMKCIINRIKNEGYDITQLIDNLLKNLDKSQYLQTI- 59

Query: 61  IDKESVNRVTSVLLQAEAAAEGDSGSASNHSAIRVIDAFLVPKFRYDSIKKHFYQHAG-S 119
              E   ++   +         +S  A    A++VIDAF  P F +DS  K F +     
Sbjct: 60  ---EGCFKLIDTI---------NSSDAIEKEALKVIDAFNTPLFNFDSNSKQFIKSENFD 107

Query: 120 LPIHGEASAKAALYRDRFLLLFQRVSRDQHFSRPSF--DVVNSEFGSCEISTIQSLVGQT 177
             +HG +++K+ LYR R+L + QR  R+ +FS P    D + +E+ +  I+ + SL+G T
Sbjct: 108 RSLHGSSNSKSDLYRKRYLKVLQRTERNDYFSTPVLASDKLKNEYQT--ITPLSSLLGNT 165

Query: 178 GRRWVMGVISQLEDGHFYLEDLAASVEIDLSKAKITTGFFTENTIVVAEGEMLVDGIFQV 237
           GR+ V+G ISQ+E+  FY+EDL  +V+ID+SKAK   G  T N+I+ A GE  +DG+F  
Sbjct: 166 GRKHVLGTISQIEEDQFYIEDLNTNVKIDISKAKFEFGIVTINSIIQASGE-FIDGVFIA 224

Query: 238 ITCGFPPLEDRDQSLKLLAGYDFFGGGTLKKEDTLRLADLEKRAANDMFVILSDIWLDNE 297
                PP E+R ++LK L   D FG    KK    +L   EK   ++  + LSD+WLD+E
Sbjct: 225 DKIQLPPTEERCETLKFLQNIDMFGERPQKKT-MEQLIKYEKEKEDNSILFLSDVWLDSE 283

Query: 298 EVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPR 357
            VM +L+ +  G++  +  P   + MGNF  HP  L   +   L+  F +L  +I  +P 
Sbjct: 284 RVMERLDYLFGGYK--DCPPFAMILMGNFTEHP--LINGTQYQLKKYFNQLAMVIQKYPN 339

Query: 358 LKEHSRFLFIPGPDDAGPS--TVLPRCALPKYLTEELQKYIPNAIFSSNPCRIKFYTQEI 415
           + + ++F+F+PGP D   S   +LP+  +     ++    IP + F++NPCRI++ +QEI
Sbjct: 340 IHQFTQFIFVPGPTDPTGSLLNILPKFPISNVFIKDFISLIPKSTFTTNPCRIRYCSQEI 399

Query: 416 VFFRQDLLYRMRRSCLIPPSREETDDPFEHLVATITHQSHLCPLPLTVQPIIWNYDHSLH 475
           + FR DL  +MRR C++ PS  ++ D  +HL+  I   SHLC L L  +PI WNYDH++ 
Sbjct: 400 IIFRDDLTNKMRRHCILEPS--QSCDISQHLIELICSNSHLCNLTLEDKPIYWNYDHAMS 457

Query: 476 LYPTPHAIVLADKSEQ-KAFKYTGITCFNPGSFSSDSTFVAYRPCTQEVEFS 526
           +YP P  +V+ DKS Q +  +  G    NP SFS+D +F  Y P  ++  ++
Sbjct: 458 VYPLPDLLVIGDKSNQYEHSRADGTYSMNPSSFSTDYSFAHYIPANKQFYYN 509

Participates in DNA repair and in chromosomal DNA replication.
Dictyostelium discoideum (taxid: 44689)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 7

>sp\|Q5ZKQ6\|DPOE2_CHICK DNA polymerase epsilon subunit 2 OS=Gallus gallus GN=POLE2 PE=2 SV=1	Back alignment and function description

>sp\|A7YWS7\|DPOE2_BOVIN DNA polymerase epsilon subunit 2 OS=Bos taurus GN=POLE2 PE=2 SV=1	Back alignment and function description

>sp\|O54956\|DPOE2_MOUSE DNA polymerase epsilon subunit 2 OS=Mus musculus GN=Pole2 PE=2 SV=2	Back alignment and function description

>sp\|P56282\|DPOE2_HUMAN DNA polymerase epsilon subunit 2 OS=Homo sapiens GN=POLE2 PE=1 SV=2	Back alignment and function description

>sp\|P0CN24\|DPB2_CRYNJ DNA polymerase epsilon subunit B OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=DPB2 PE=3 SV=1	Back alignment and function description

>sp\|P0CN25\|DPB2_CRYNB DNA polymerase epsilon subunit B OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=DPB2 PE=3 SV=1	Back alignment and function description

>sp\|O94263\|DPB2_SCHPO DNA polymerase epsilon subunit B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dpb2 PE=1 SV=1	Back alignment and function description

>sp\|Q19196\|DPOE2_CAEEL Probable DNA polymerase epsilon subunit 2 OS=Caenorhabditis elegans GN=pole-2 PE=3 SV=2	Back alignment and function description

>sp\|Q6FSK8\|DPB2_CANGA DNA polymerase epsilon subunit B OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=DPB2 PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		528
225455720		527	PREDICTED: DNA polymerase epsilon subuni	0.998	1.0	0.804	0.0
297734108		527	unnamed protein product [Vitis vinifera]	0.998	1.0	0.793	0.0
255580392		536	DNA polymerase epsilon subunit B, putati	1.0	0.985	0.794	0.0
356560075		525	PREDICTED: DNA polymerase epsilon subuni	0.988	0.994	0.771	0.0
449507384		536	PREDICTED: DNA polymerase epsilon subuni	0.988	0.973	0.758	0.0
224120420		518	predicted protein [Populus trichocarpa]	0.967	0.986	0.766	0.0
145361161		526	DNA polymerase epsilon subunit B2 [Arabi	0.962	0.965	0.754	0.0
62320640		526	DNA polymerase epsilon subunit B -like p	0.962	0.965	0.752	0.0
297812329		526	hypothetical protein ARALYDRAFT_489063 [	0.962	0.965	0.756	0.0
226531428		533	DNA polymerase epsilon subunit 2 [Zea ma	0.996	0.986	0.719	0.0

>gi\|225455720\|ref\|XP_002267181.1\| PREDICTED: DNA polymerase epsilon subunit 2-like [Vitis vinifera]	Back alignment and taxonomy information

 Score =  902 bits (2332), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/528 (80%), Positives = 475/528 (89%), Gaps = 1/528 (0%)

Query: 1   MSGQTRKKIQKKMKIRGYGLRMDALDEILSFVNRFPDAEDEAIDLLLDQFEHESSLKSSI 60
           M   TRKK+Q+K KIRGY L+++ALDEILSF++ F DAEDEAIDLLLD+ E+ES LKSSI
Sbjct: 1   MGAATRKKVQRKFKIRGYTLKVEALDEILSFLSHFQDAEDEAIDLLLDELENES-LKSSI 59

Query: 61  IDKESVNRVTSVLLQAEAAAEGDSGSASNHSAIRVIDAFLVPKFRYDSIKKHFYQHAGSL 120
           +DKESV+RV S+LL+AEAA E   G+ S  SA+R++DAFL+ KF YD IKK FY++ G L
Sbjct: 60  LDKESVHRVVSLLLEAEAAVEETPGAISTRSALRIVDAFLMSKFCYDPIKKIFYENTGRL 119

Query: 121 PIHGEASAKAALYRDRFLLLFQRVSRDQHFSRPSFDVVNSEFGSCEISTIQSLVGQTGRR 180
            IHG+ASAK+ALYR+RFLLLFQR+SRDQHFS+P+FD   S FGSCEIS IQSL+GQTG+R
Sbjct: 120 AIHGDASAKSALYRNRFLLLFQRLSRDQHFSKPAFDTEMSHFGSCEISPIQSLIGQTGKR 179

Query: 181 WVMGVISQLEDGHFYLEDLAASVEIDLSKAKITTGFFTENTIVVAEGEMLVDGIFQVITC 240
           WVMGVISQLEDGHF+LEDL ASVEI+LS AKITTGFF+ENTI+VAEGEM +DGIFQV TC
Sbjct: 180 WVMGVISQLEDGHFFLEDLTASVEINLSNAKITTGFFSENTIIVAEGEMFLDGIFQVSTC 239

Query: 241 GFPPLEDRDQSLKLLAGYDFFGGGTLKKEDTLRLADLEKRAANDMFVILSDIWLDNEEVM 300
           GFPPLEDRD+SL  L+G DFFGGGTL +E+TLRLA LEK+A NDMFVILSD+WLDNEE M
Sbjct: 240 GFPPLEDRDESLASLSGLDFFGGGTLTREETLRLAGLEKKAVNDMFVILSDVWLDNEETM 299

Query: 301 GKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKE 360
           GKL  VLDG+E+VEVVPSLF+FMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIA+HPRLKE
Sbjct: 300 GKLATVLDGYENVEVVPSLFIFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIASHPRLKE 359

Query: 361 HSRFLFIPGPDDAGPSTVLPRCALPKYLTEELQKYIPNAIFSSNPCRIKFYTQEIVFFRQ 420
           HS+FLFIPGPDDAGPSTVLPRCALP YLTEE +KYIPNAIFSSNPCRIKFYTQEIV FRQ
Sbjct: 360 HSQFLFIPGPDDAGPSTVLPRCALPNYLTEEFKKYIPNAIFSSNPCRIKFYTQEIVLFRQ 419

Query: 421 DLLYRMRRSCLIPPSREETDDPFEHLVATITHQSHLCPLPLTVQPIIWNYDHSLHLYPTP 480
           DLLYRMRRSCL+PPS EET DPFEHLVATITHQSHLCPLPL+VQPIIWNYDH LHLYP P
Sbjct: 420 DLLYRMRRSCLVPPSPEETSDPFEHLVATITHQSHLCPLPLSVQPIIWNYDHCLHLYPNP 479

Query: 481 HAIVLADKSEQKAFKYTGITCFNPGSFSSDSTFVAYRPCTQEVEFSAL 528
           H IVL D+SEQKAFKYTGI CFNPGSFS++STFVAYRPCTQEVE SAL
Sbjct: 480 HTIVLGDRSEQKAFKYTGIMCFNPGSFSNESTFVAYRPCTQEVELSAL 527

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|297734108\|emb\|CBI15355.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255580392\|ref\|XP_002531023.1\| DNA polymerase epsilon subunit B, putative [Ricinus communis] gi\|223529398\|gb\|EEF31361.1\| DNA polymerase epsilon subunit B, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|356560075\|ref\|XP_003548321.1\| PREDICTED: DNA polymerase epsilon subunit 2-like [Glycine max]	Back alignment and taxonomy information

>gi\|449507384\|ref\|XP_004163016.1\| PREDICTED: DNA polymerase epsilon subunit 2-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|224120420\|ref\|XP_002318325.1\| predicted protein [Populus trichocarpa] gi\|222858998\|gb\|EEE96545.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|145361161\|ref\|NP_680197.2\| DNA polymerase epsilon subunit B2 [Arabidopsis thaliana] gi\|63147392\|gb\|AAY34169.1\| At5g22110 [Arabidopsis thaliana] gi\|332005601\|gb\|AED92984.1\| DNA polymerase epsilon subunit B2 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|62320640\|dbj\|BAD95306.1\| DNA polymerase epsilon subunit B -like protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|297812329\|ref\|XP_002874048.1\| hypothetical protein ARALYDRAFT_489063 [Arabidopsis lyrata subsp. lyrata] gi\|297319885\|gb\|EFH50307.1\| hypothetical protein ARALYDRAFT_489063 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|226531428\|ref\|NP_001147081.1\| DNA polymerase epsilon subunit 2 [Zea mays] gi\|195607112\|gb\|ACG25386.1\| DNA polymerase epsilon subunit 2 [Zea mays] gi\|414869832\|tpg\|DAA48389.1\| TPA: DNA polymerase epsilon subunit 2 [Zea mays]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		528
TAIR\|locus:504956460		526	DPB2 "DNA polymerase epsilon s	0.990	0.994	0.726	3.8e-204
DICTYBASE\|DDB_G0278367		676	DDB_G0278367 "putative DNA pol	0.950	0.742	0.341	7.6e-80
ZFIN\|ZDB-GENE-020419-16		527	pole2 "polymerase (DNA directe	0.965	0.967	0.345	2.1e-77
UNIPROTKB\|Q5ZKQ6		527	POLE2 "DNA polymerase epsilon	0.814	0.815	0.376	5e-76
RGD\|1311962		527	Pole2 "polymerase (DNA directe	0.893	0.895	0.357	6.3e-76
UNIPROTKB\|E2RCT9		527	DNAAF2 "Uncharacterized protei	0.960	0.962	0.340	2.1e-75
UNIPROTKB\|A7YWS7		527	POLE2 "DNA polymerase epsilon	0.954	0.956	0.340	3.5e-75
UNIPROTKB\|F1SHZ5		527	POLE2 "Uncharacterized protein	0.962	0.963	0.341	3.5e-75
UNIPROTKB\|F1MKI8		527	POLE2 "DNA polymerase epsilon	0.954	0.956	0.340	4.5e-75
UNIPROTKB\|J9PBE8		547	DNAAF2 "Uncharacterized protei	0.952	0.919	0.339	5.7e-75

TAIR\|locus:504956460 DPB2 "DNA polymerase epsilon subunit B2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1975 (700.3 bits), Expect = 3.8e-204, P = 3.8e-204
 Identities = 383/527 (72%), Positives = 431/527 (81%)

Query:     2 SGQTRKKIQKKMKIRGYGLRMDALDEILSFVNRFPXXXXXXXXXXXXQFEHESSLKSSII 61
             + Q RKKIQKK K RGY L+ DALDEIL F ++FP                E+  KSS +
Sbjct:     4 TSQKRKKIQKKFKNRGYNLKFDALDEILVFADQFPDDDDGEAIDLLLDNLQETH-KSSTV 62

Query:    62 DKESVNRVTSVLLQXXXXXXXXXXXXXNHSAIRVIDAFLVPKFRYDSIKKHFYQHAGSLP 121
             D ESV  + + LL                S++ +IDAFLVPKF YDS+KK F +H  SLP
Sbjct:    63 DAESVRGLINRLLGAHNAPEEPTTSA---SSLAIIDAFLVPKFGYDSVKKKFNEHTSSLP 119

Query:   122 IHGEASAKAALYRDRFLLLFQRVSRDQHFSRPSFDVVNSEFGSCEISTIQSLVGQTGRRW 181
             IHGEASAK ALYR+RF+LL QRVSR +HFSRP+FD   S+F + EIS+IQSL+ Q GR+W
Sbjct:   120 IHGEASAKTALYRERFMLLSQRVSRAEHFSRPAFDAEMSQFENNEISSIQSLISQRGRKW 179

Query:   182 VMGVISQLEDGHFYLEDLAASVEIDLSKAKITTGFFTENTIVVAEGEMLVDGIFQVITCG 241
             VMGVISQLEDGHFYLEDL+ASVEIDLSKAKITTGFFTENTI++AEGEM V+GIFQVITCG
Sbjct:   180 VMGVISQLEDGHFYLEDLSASVEIDLSKAKITTGFFTENTIILAEGEMQVNGIFQVITCG 239

Query:   242 FPPLEDRDQSLKLLAGYDFFGGGTLKKEDTLRLADLEKRAANDMFVILSDIWLDNEEVMG 301
             FPPLEDRD++LK  + YDFFGGGTL KE+ ++LADLE++A ND FVILSDIWLD+EEVM 
Sbjct:   240 FPPLEDRDKTLKAHSEYDFFGGGTLTKEEMIKLADLERQAVNDTFVILSDIWLDDEEVMR 299

Query:   302 KLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEH 361
             KLE VLDGFESVE VPSLFVFMGNFCS PCNLSF S+SSLR QFGKLG+MI  HPRLKE+
Sbjct:   300 KLETVLDGFESVETVPSLFVFMGNFCSRPCNLSFGSYSSLREQFGKLGRMIGNHPRLKEN 359

Query:   362 SRFLFIPGPDDAGPSTVLPRCALPKYLTEELQKYIPNAIFSSNPCRIKFYTQEIVFFRQD 421
             SRFLFIPGP+DAGPSTVLPRCALPKYLTEEL+  IPNAIFSSNPCR+KFY QEIVFFRQD
Sbjct:   360 SRFLFIPGPEDAGPSTVLPRCALPKYLTEELRNIIPNAIFSSNPCRVKFYNQEIVFFRQD 419

Query:   422 LLYRMRRSCLIPPSREETDDPFEHLVATITHQSHLCPLPLTVQPIIWNYDHSLHLYPTPH 481
             LLYRMRRSCL+ PS EET+DPF+HLV TITHQSHLCPLPL VQPIIWNYDH+L LYPTPH
Sbjct:   420 LLYRMRRSCLVTPSSEETNDPFKHLVYTITHQSHLCPLPLMVQPIIWNYDHALRLYPTPH 479

Query:   482 AIVLADKSEQKAFKYTGITCFNPGSFSSDSTFVAYRPCTQEVEFSAL 528
              IVL DKSEQ+  K+ G TCFNPGSFS+DSTFVAYRP TQEVE SAL
Sbjct:   480 TIVLGDKSEQEVCKFGGTTCFNPGSFSTDSTFVAYRPSTQEVELSAL 526

GO:0003677 "DNA binding" evidence=IEA

GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0006260 "DNA replication" evidence=IEA

GO:0006261 "DNA-dependent DNA replication" evidence=IEA

GO:0008622 "epsilon DNA polymerase complex" evidence=IPI

DICTYBASE\|DDB_G0278367 DDB_G0278367 "putative DNA polymerase epsilon subunit B" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-020419-16 pole2 "polymerase (DNA directed), epsilon 2" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5ZKQ6 POLE2 "DNA polymerase epsilon subunit 2" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

RGD\|1311962 Pole2 "polymerase (DNA directed), epsilon 2, accessory subunit" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|E2RCT9 DNAAF2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|A7YWS7 POLE2 "DNA polymerase epsilon subunit 2" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|F1SHZ5 POLE2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|F1MKI8 POLE2 "DNA polymerase epsilon subunit 2" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|J9PBE8 DNAAF2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A7YWS7	DPOE2_BOVIN	2, ., 7, ., 7, ., 7	0.3531	0.9526	0.9544	yes	no
O54956	DPOE2_MOUSE	2, ., 7, ., 7, ., 7	0.3538	0.9545	0.9563	yes	no
P0CN24	DPB2_CRYNJ	2, ., 7, ., 7, ., 7	0.3493	0.8352	0.8151	yes	no
Q5ZKQ6	DPOE2_CHICK	2, ., 7, ., 7, ., 7	0.3463	0.9545	0.9563	yes	no
P56282	DPOE2_HUMAN	2, ., 7, ., 7, ., 7	0.3414	0.9564	0.9582	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.7	0.766
4th Layer	2.7.7.7	0.824

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		528
pfam04042		189	pfam04042, DNA_pol_E_B, DNA polymerase alpha/epsil	4e-49
PTZ00235		291	PTZ00235, PTZ00235, DNA polymerase epsilon subunit	6e-22

>gnl\|CDD\|217857 pfam04042, DNA_pol_E_B, DNA polymerase alpha/epsilon subunit B	Back alignment and domain information

 Score =  167 bits (425), Expect = 4e-49
 Identities = 61/191 (31%), Positives = 84/191 (43%), Gaps = 7/191 (3%)

Query: 302 KLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEH 361
            L  +LDG+      P   +  G F S P NL   S  +L   F  L  +     +L   
Sbjct: 2   LLRDLLDGY--NAAPPDRLILAGPFLSAPHNLIASSKVNLTYDFLFLKLLDGILEQLLSS 59

Query: 362 SRFLFIPGPDDAGPSTVLPRCALPKYLTEELQKYIPNAIFSSNPCRIKFYTQEIVFFRQD 421
           +  + +PGP+D   STVLP+   P+ L  + +KY  +  F +NPCR      EIV    D
Sbjct: 60  TPVILVPGPNDPTNSTVLPQPPFPRCLFPKSKKYN-SLQFVTNPCRFSINGVEIVVTSGD 118

Query: 422 LLYRMRRSCLIPPSREETDDPFEHLVATITHQSHLCPL-PLTVQPIIWNYDHSLHLYPTP 480
            +  + R  L   S EE       LV TI  Q HL PL P T+ P  ++ D    L P P
Sbjct: 119 NVKDLLRYSLKFSSSEE---RLLRLVETILRQRHLYPLAPDTLGPYPYDKDDPFVLDPLP 175

Query: 481 HAIVLADKSEQ 491
              ++ DK   
Sbjct: 176 DVFIVGDKLPP 186

This family contains a number of DNA polymerase subunits. The B subunit of the DNA polymerase alpha plays an essential role at the initial stage of DNA replication in S. cerevisiae and is phosphorylated in a cell cycle-dependent manner. DNA polymerase epsilon is essential for cell viability and chromosomal DNA replication in budding yeast. In addition, DNA polymerase epsilon may be involved in DNA repair and cell-cycle checkpoint control. The enzyme consists of at least four subunits in mammalian cells as well as in yeast. The largest subunit of DNA polymerase epsilon is responsible for polymerase epsilon is responsible for polymerase activity. In mouse, the DNA polymerase epsilon subunit B is the second largest subunit of the DNA polymerase. A part of the N-terminal was found to be responsible for the interaction with SAP18. Experimental evidence suggests that this subunit may recruit histone deacetylase to the replication fork to modify the chromatin structure. Length = 189

>gnl\|CDD\|185521 PTZ00235, PTZ00235, DNA polymerase epsilon subunit B; Provisional	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		528
KOG3818		525	consensus DNA polymerase epsilon, subunit B [Repli	100.0
PTZ00235		291	DNA polymerase epsilon subunit B; Provisional	100.0
PRK04036		504	DNA polymerase II small subunit; Validated	100.0
KOG1625		600	consensus DNA polymerase alpha-primase complex, po	100.0
COG1311		481	HYS2 Archaeal DNA polymerase II, small subunit/DNA	100.0
PF04042		209	DNA_pol_E_B: DNA polymerase alpha/epsilon subunit	100.0
cd07386		243	MPP_DNA_pol_II_small_archeal_C archeal DNA polymer	99.97
cd07387		257	MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2	99.97
COG5214		581	POL12 DNA polymerase alpha-primase complex, polyme	99.95
KOG2732		435	consensus DNA polymerase delta, regulatory subunit	99.95
PF12213		73	Dpoe2NT: DNA polymerases epsilon N terminal; Inter	99.47
PRK05340		241	UDP-2,3-diacylglucosamine hydrolase; Provisional	98.8
PRK09453		182	phosphodiesterase; Provisional	98.77
cd07398		217	MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and relat	98.69
TIGR01854		231	lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase.	98.69
cd00841		155	MPP_YfcE Escherichia coli YfcE and related protein	98.57
cd07394		178	MPP_Vps29 Homo sapiens Vps29 and related proteins,	98.54
COG2908		237	Uncharacterized protein conserved in bacteria [Fun	98.47
PF12850		156	Metallophos_2: Calcineurin-like phosphoesterase su	98.42
TIGR00040		158	yfcE phosphoesterase, MJ0936 family. Members of th	98.41
COG0622		172	Predicted phosphoesterase [General function predic	98.35
cd07402		240	MPP_GpdQ Enterobacter aerogenes GpdQ and related p	98.16
PHA02546		340	47 endonuclease subunit; Provisional	98.08
PF14582		255	Metallophos_3: Metallophosphoesterase, calcineurin	98.06
cd07388		224	MPP_Tt1561 Thermus thermophilus Tt1561 and related	98.03
cd07400		144	MPP_YydB Bacillus subtilis YydB and related protei	97.92
cd07379		135	MPP_239FB Homo sapiens 239FB and related proteins,	97.82
cd07392		188	MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and rel	97.81
cd00840		223	MPP_Mre11_N Mre11 nuclease, N-terminal metallophos	97.76
COG2129		226	Predicted phosphoesterases, related to the Icc pro	97.69
cd08165		156	MPP_MPPE1 human MPPE1 and related proteins, metall	97.49
cd07385		223	MPP_YkuE_C Bacillus subtilis YkuE and related prot	97.35
TIGR00619		253	sbcd exonuclease SbcD. This family is based on the	97.32
PRK11148		275	cyclic 3',5'-adenosine monophosphate phosphodieste	97.32
COG0420		390	SbcD DNA repair exonuclease [DNA replication, reco	97.27
cd07395		262	MPP_CSTP1 Homo sapiens CSTP1 and related proteins,	97.22
cd07396		267	MPP_Nbla03831 Homo sapiens Nbla03831 and related p	97.2
PRK11340		271	phosphodiesterase YaeI; Provisional	97.04
cd07391		172	MPP_PF1019 Pyrococcus furiosus PF1019 and related	97.03
cd07384		171	MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and re	97.01
COG1409		301	Icc Predicted phosphohydrolases [General function	96.86
cd07404		166	MPP_MS158 Microscilla MS158 and related proteins,	96.76
PRK10966		407	exonuclease subunit SbcD; Provisional	96.76
PF00149		200	Metallophos: Calcineurin-like phosphoesterase; Int	96.69
cd07383		199	MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase	96.68
cd07401		256	MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metal	96.64
cd07424		207	MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase do	96.63
cd07390		168	MPP_AQ1575 Aquifex aeolicus AQ1575 and related pro	96.62
cd07399		214	MPP_YvnB Bacillus subtilis YvnB and related protei	96.56
cd04490		79	PolII_SU_OBF PolII_SU_OBF: A subfamily of OB folds	96.56
TIGR03729		239	acc_ester putative phosphoesterase. Members of thi	96.53
cd08166		195	MPP_Cdc1_like_1 uncharacterized subgroup related t	96.47
TIGR00583		405	mre11 DNA repair protein (mre11). All proteins in	96.45
cd07393		232	MPP_DR1119 Deinococcus radiodurans DR1119 and rela	96.35
PRK09968		218	serine/threonine-specific protein phosphatase 2; P	96.18
TIGR00024		225	SbcD_rel_arch putative phosphoesterase, SbcD/Mre11	96.15
cd07423		234	MPP_PrpE Bacillus subtilis PrpE and related protei	95.82
COG1407		235	Predicted ICC-like phosphoesterases [General funct	95.81
cd08163		257	MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related	95.66
PHA02239		235	putative protein phosphatase	95.21
cd07403		129	MPP_TTHA0053 Thermus thermophilus TTHA0053 and rel	95.12
PRK13254		148	cytochrome c-type biogenesis protein CcmE; Reviewe	94.66
cd08164		193	MPP_Ted1 Saccharomyces cerevisiae Ted1 and related	94.56
COG4186		186	Predicted phosphoesterase or phosphohydrolase [Gen	94.52
cd00839		294	MPP_PAPs purple acid phosphatases of the metalloph	94.42
PF03100		131	CcmE: CcmE; InterPro: IPR004329 CcmE is the produc	94.4
cd00838		131	MPP_superfamily metallophosphatase superfamily, me	94.37
KOG3662		410	consensus Cell division control protein/predicted	93.7
cd07378		277	MPP_ACP5 Homo sapiens acid phosphatase 5 and relat	93.17
COG1408		284	Predicted phosphohydrolases [General function pred	92.86
cd07425		208	MPP_Shelphs Shewanella-like phosphatases, metallop	92.76
PRK13150		159	cytochrome c-type biogenesis protein CcmE; Reviewe	92.74
PRK00166		275	apaH diadenosine tetraphosphatase; Reviewed	92.61
cd00845		252	MPP_UshA_N_like Escherichia coli UshA-like family,	92.49
COG2332		153	CcmE Cytochrome c-type biogenesis protein CcmE [Po	91.94
PRK13165		160	cytochrome c-type biogenesis protein CcmE; Reviewe	91.9
cd07397		238	MPP_DevT Myxococcus xanthus DevT and related prote	91.89
cd00844		262	MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-t	91.67
PRK13159		155	cytochrome c-type biogenesis protein CcmE; Reviewe	91.34
cd00144		225	MPP_PPP_family phosphoprotein phosphatases of the	90.57
PRK11439		218	pphA serine/threonine protein phosphatase 1; Provi	90.2
cd07422		257	MPP_ApaH Escherichia coli ApaH and related protein	89.99
PF01336		75	tRNA_anti-codon: OB-fold nucleic acid binding doma	89.69
PLN02533		427	probable purple acid phosphatase	89.15
cd07421		304	MPP_Rhilphs Rhilph phosphatases, metallophosphatas	88.87
cd07413		222	MPP_PA3087 Pseudomonas aeruginosa PA3087 and relat	87.8
cd07408		257	MPP_SA0022_N Staphylococcus aureus SA0022 and rela	87.32
cd00842		296	MPP_ASMase acid sphingomyelinase and related prote	85.88
cd04489		78	ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB fol	84.57
cd07406		257	MPP_CG11883_N Drosophila melanogaster CG11883 and	83.78
TIGR00668		279	apaH bis(5'-nucleosyl)-tetraphosphatase (symmetric	83.06
PRK06920		1107	dnaE DNA polymerase III DnaE; Reviewed	82.94
cd04478		95	RPA2_DBD_D RPA2_DBD_D: A subfamily of OB folds cor	82.18
PF04076		103	BOF: Bacterial OB fold (BOF) protein; InterPro: IP	82.04
PRK05629		318	hypothetical protein; Validated	81.45

>KOG3818 consensus DNA polymerase epsilon, subunit B [Replication, recombination and repair]	Back alignment and domain information

Probab=100.00  E-value=9e-128  Score=973.86  Aligned_cols=510  Identities=32%  Similarity=0.589  Sum_probs=474.5

Q ss_pred             hHHHHHHHHHHHhcCCccCHHHHHHHHHhhccCCCCh-HHHHHHHHHHHhcccCCCcceeeHHHHHHHHHHHHHhhhccc
Q 009713            3 GQTRKKIQKKMKIRGYGLRMDALDEILSFVNRFPDAE-DEAIDLLLDQFEHESSLKSSIIDKESVNRVTSVLLQAEAAAE   81 (528)
Q Consensus         3 ~~~r~~i~~~fk~~gl~l~~~al~~l~~~~~~~~~~~-~~~~~~~~~~i~k~~~~~~~~vd~~~l~~~~~~~~~~~~~~~   81 (528)
                      +.+|+.+-.+||+.|.+++++|.++|+++.......+ .+|++.+++.|++|. +.+..+..+.+++++++|+.      
T Consensus         6 ~~L~~~as~~fk~~G~l~R~~~ik~L~e~~~~~~~~er~~~i~~i~e~iq~q~-l~s~~~~r~~~~~avq~~~~------   78 (525)
T KOG3818|consen    6 DRLRELASFVFKLCGHLWRSEAIKLLVELALDWKKEERKKWINKIIELIQKQK-LNSPHEEREAIEAAVQECSS------   78 (525)
T ss_pred             HHHHHHHHHHHhhhhHHHHHhHHHHHHHHHhhhHHHHhhhhHHHHHHHHHhhc-cCCchhhHHHHHHHHHHhhh------
Confidence            4899999999999999999999999999987766554 489999999999996 99999999999999999976      


Q ss_pred             CCCCCCCCCCceEEeCCCCCCCeeeecccceeec-cCCCCCccCChhHHHHHHHHHHHHHHHHHhccCCCCCCcccc-cc
Q 009713           82 GDSGSASNHSAIRVIDAFLVPKFRYDSIKKHFYQ-HAGSLPIHGEASAKAALYRDRFLLLFQRVSRDQHFSRPSFDV-VN  159 (528)
Q Consensus        82 ~~~~~~~~~~~~~vi~af~~P~~~y~~~~k~f~~-~~~~~~l~~~~~~k~~~f~~Ry~~l~~rl~R~~~F~~~~~~~-~~  159 (528)
                        ++..+++++|+|||||++|||.||+++|+|+. ...+++|++++.+|++|||+||.+++||++||++|++|...+ ..
T Consensus        79 --sg~~~~e~~F~vidAf~~prF~Yn~~~kkFvl~~k~~~~l~~~~~~ks~m~~~Ry~i~~qR~mR~e~Fq~pv~~s~~~  156 (525)
T KOG3818|consen   79 --SGTQDAEKYFNVIDAFSLPRFDYNSDRKKFVLPNKPKPSLLADPSDKSDMFRQRYFIVKQRTMRNELFQPPVSGSGRC  156 (525)
T ss_pred             --cccccHHHHHhhcchhcCCccccCchheEEEecCCCCccccCChHHHHHHHHHHHHHHHHHHHhhhccCCCccCCchh
Confidence              35578899999999999999999999999976 455569999999999999999999999999999999984433 33


Q ss_pred             CCCCccceeeccccc-CCCCcE-EEEEEEEEcCCCcEEEEeCCcEEEEEeccccccceeeccCeEEEEEEEEeeCCeEEE
Q 009713          160 SEFGSCEISTIQSLV-GQTGRR-WVMGVISQLEDGHFYLEDLAASVEIDLSKAKITTGFFTENTIVVAEGEMLVDGIFQV  237 (528)
Q Consensus       160 ~~~~~~~it~I~~Ll-g~~g~~-~vlGml~~~~~g~~~LED~sg~V~Ldls~~~~~~g~f~~G~vV~veG~~~~~g~F~V  237 (528)
                      .+.+++++|||++|+ |+.++. .|+|||+|..+|+|+|||++|+|+||+++++++.|+|||||+|+|||.|. +|+|+|
T Consensus       157 ~q~~~fklt~ienLL~t~~~~~~lvLGlLTq~k~G~~~lEDpsgsVqlDlsqa~fh~glf~egC~VL~EG~f~-~~vf~V  235 (525)
T KOG3818|consen  157 AQLKKFKLTPIENLLSTRALQSFLVLGLLTQLKEGKFHLEDPSGSVQLDLSQAKFHHGLFCEGCFVLVEGTFE-SGVFHV  235 (525)
T ss_pred             hhccccceeEHHHhhccccccceeeeehhhhccCCcEEEeCCCCcEEEeecccccccceeccceEEEEeeeee-cceEEE
Confidence            455679999999999 677766 79999999999999999999999999999999999999999999999995 699999


Q ss_pred             EEecCCCCCCchhhhhhhcCcccCCCCCC-chhhhHHHHHHHHhccCCeEEEEeCCccCcHhHHHHHHHHHhcccCCCCC
Q 009713          238 ITCGFPPLEDRDQSLKLLAGYDFFGGGTL-KKEDTLRLADLEKRAANDMFVILSDIWLDNEEVMGKLEVVLDGFESVEVV  316 (528)
Q Consensus       238 ~~i~~Pp~e~r~~s~~~~~~~d~fG~~~~-~~~~~~~l~~~e~~~~~~~~v~lSdv~ld~~~~le~L~~ll~~~~~~~~~  316 (528)
                      +++|+||.|+|+.|++.+||+|+||+++. +.+...+|+.+|++++|.++||+||||||+.++|++|+++|+||+++  +
T Consensus       236 ~~lg~PP~E~~~~tr~~~gN~n~~Gg~~~~~~k~sA~L~~lE~~~~d~~fVfLSdV~LD~~~vm~aL~kifqgy~~~--p  313 (525)
T KOG3818|consen  236 NELGFPPVERREVTRKELGNLNWLGGDSKIAFKCSARLRSLEAENTDTSFVFLSDVFLDDKKVMEALRKIFQGYKDA--P  313 (525)
T ss_pred             eeccCCCCCcchhHHHHhccCcccCCcchhhhHHHHHHHHHHHhCcCceEEEEehhccccHHHHHHHHHHHhhccCC--C
Confidence            99999999999999999999999999864 56788999999999999999999999999999999999999999986  9


Q ss_pred             CeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHHcCCCCCCceeEEEecCCCCCCCCCCCCCCCCchhhHHHHhhhC
Q 009713          317 PSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSRFLFIPGPDDAGPSTVLPRCALPKYLTEELQKYI  396 (528)
Q Consensus       317 P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~~~p~l~~~~~~v~VPG~~Dp~~~~~lPqpplp~~~~~~l~~~~  396 (528)
                      |.+||+||+|+|.|.+.  ++...|+++|+.||..|+.++...++|+|||||||+|||.+++|||||||+.|++++.+.+
T Consensus       314 P~~iIlcG~FtS~p~~~--~s~~~~k~~f~~LA~~l~~~~~~~ekT~fIFVPGP~Dp~~~~iLPr~piP~~~~~~i~kv~  391 (525)
T KOG3818|consen  314 PTAIILCGSFTSSPRQT--SSSDQLKDGFRWLAAQLTCFRKDYEKTQFIFVPGPNDPWVDNILPRPPIPSLFTKHISKVC  391 (525)
T ss_pred             CeEEEEecccccccccc--chHHHHHHHHHHHHhhccccccccccceEEEecCCCCCCcCccCCCCCchHHHHHHHHhhc
Confidence            99999999999999764  4678999999999999999998889999999999999999999999999999999999999


Q ss_pred             CceEEecCCeEEEEccEEEEEEehHHHHHHhhcccCCCCCCCCCChHHHHHHHHhcCCCCCCCCCCCccccCCCCCcccc
Q 009713          397 PNAIFSSNPCRIKFYTQEIVFFRQDLLYRMRRSCLIPPSREETDDPFEHLVATITHQSHLCPLPLTVQPIIWNYDHSLHL  476 (528)
Q Consensus       397 ~n~~~~sNPcri~~~~~eIvi~rdDl~~~l~r~~i~~p~~~~~~d~~~~l~ktiL~Q~hL~Pl~~~~~pi~w~~d~~L~L  476 (528)
                      ||++|+||||||.||+|||||||+|+++|+|||++.+|.+.  ....+|+|||||+||||+|+++.++||+|||||+|+|
T Consensus       392 ~~tvfasNPcRIqy~sQEIvVfR~DL~~kfcRn~l~Fp~~~--~qipq~~vkTIL~QgHLsP~p~~~~PV~WD~D~aLsl  469 (525)
T KOG3818|consen  392 KNTVFASNPCRIQYCSQEIVVFRDDLSGKFCRNSLNFPITV--EQIPQHLVKTILDQGHLSPFPQHIRPVLWDFDHALSL  469 (525)
T ss_pred             CCceeccCCeeeEeecceEEEEhHhhhhHHhhccccCCCcH--HHHHHHHHHHHhhccccCCCccccCccccCcccceEe
Confidence            99999999999999999999999999999999999998644  3678999999999999999999999999999999999


Q ss_pred             cCCCcEEEecCCCCcc-eEEeCCeEEEcCCCC-CCCcEEEEEECCCCeEEeccC
Q 009713          477 YPTPHAIVLADKSEQK-AFKYTGITCFNPGSF-SSDSTFVAYRPCTQEVEFSAL  528 (528)
Q Consensus       477 ~p~Pdvlil~d~~~~f-~~~y~gc~~vNpGsf-~~~~sf~~y~p~~~~~e~~~~  528 (528)
                      ||+||+||++|++.+| .++|+||.|+|||+| .++++|.+|+|+++++|.|++
T Consensus       470 ~PlPdlmvl~Ds~~sf~~vt~~gC~v~NPGSF~~s~~~f~vy~P~~k~ve~sei  523 (525)
T KOG3818|consen  470 YPLPDLMVLADSFSSFFDVTYAGCIVINPGSFSRSNYTFKVYYPSQKTVEDSEI  523 (525)
T ss_pred             ccCcceEEeecccccccccccCCceeeCCCcccccceeEEEEecccceeecccc
Confidence            9999999999999765 479999999999999 688999999999999999985

>PTZ00235 DNA polymerase epsilon subunit B; Provisional	Back alignment and domain information

>PRK04036 DNA polymerase II small subunit; Validated	Back alignment and domain information

>KOG1625 consensus DNA polymerase alpha-primase complex, polymerase-associated subunit B [Replication, recombination and repair]	Back alignment and domain information

>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]	Back alignment and domain information

>PF04042 DNA_pol_E_B: DNA polymerase alpha/epsilon subunit B; InterPro: IPR007185 DNA polymerase epsilon is essential for cell viability and chromosomal DNA replication in budding yeast	Back alignment and domain information

>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain	Back alignment and domain information

>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain	Back alignment and domain information

>COG5214 POL12 DNA polymerase alpha-primase complex, polymerase-associated subunit B [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG2732 consensus DNA polymerase delta, regulatory subunit 55 [Replication, recombination and repair]	Back alignment and domain information

>PF12213 Dpoe2NT: DNA polymerases epsilon N terminal; InterPro: IPR024639 This domain is found in the N-terminal of DNA polymerase epsilon subunit B proteins	Back alignment and domain information

>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional	Back alignment and domain information

>PRK09453 phosphodiesterase; Provisional	Back alignment and domain information

>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain	Back alignment and domain information

>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase	Back alignment and domain information

>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain	Back alignment and domain information

>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain	Back alignment and domain information

>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily []	Back alignment and domain information

>TIGR00040 yfcE phosphoesterase, MJ0936 family	Back alignment and domain information

>COG0622 Predicted phosphoesterase [General function prediction only]	Back alignment and domain information

>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain	Back alignment and domain information

>PHA02546 47 endonuclease subunit; Provisional	Back alignment and domain information

>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A	Back alignment and domain information

>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain	Back alignment and domain information

>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain	Back alignment and domain information

>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain	Back alignment and domain information

>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain	Back alignment and domain information

>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain	Back alignment and domain information

>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]	Back alignment and domain information

>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain	Back alignment and domain information

>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain	Back alignment and domain information

>TIGR00619 sbcd exonuclease SbcD	Back alignment and domain information

>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional	Back alignment and domain information

>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]	Back alignment and domain information

>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain	Back alignment and domain information

>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain	Back alignment and domain information

>PRK11340 phosphodiesterase YaeI; Provisional	Back alignment and domain information

>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain	Back alignment and domain information

>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain	Back alignment and domain information

>COG1409 Icc Predicted phosphohydrolases [General function prediction only]	Back alignment and domain information

>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain	Back alignment and domain information

>PRK10966 exonuclease subunit SbcD; Provisional	Back alignment and domain information

>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11	Back alignment and domain information

>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain	Back alignment and domain information

>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain	Back alignment and domain information

>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain	Back alignment and domain information

>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain	Back alignment and domain information

>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain	Back alignment and domain information

>cd04490 PolII_SU_OBF PolII_SU_OBF: A subfamily of OB folds corresponding to the OB fold found in Pyrococcus abyssi DNA polymerase II (PolII) small subunit	Back alignment and domain information

>TIGR03729 acc_ester putative phosphoesterase	Back alignment and domain information

>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain	Back alignment and domain information

>TIGR00583 mre11 DNA repair protein (mre11)	Back alignment and domain information

>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain	Back alignment and domain information

>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional	Back alignment and domain information

>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related	Back alignment and domain information

>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain	Back alignment and domain information

>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]	Back alignment and domain information

>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain	Back alignment and domain information

>PHA02239 putative protein phosphatase	Back alignment and domain information

>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain	Back alignment and domain information

>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed	Back alignment and domain information

>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain	Back alignment and domain information

>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]	Back alignment and domain information

>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain	Back alignment and domain information

>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria	Back alignment and domain information

>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain	Back alignment and domain information

>KOG3662 consensus Cell division control protein/predicted DNA repair exonuclease [Replication, recombination and repair]	Back alignment and domain information

>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain	Back alignment and domain information

>COG1408 Predicted phosphohydrolases [General function prediction only]	Back alignment and domain information

>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain	Back alignment and domain information

>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed	Back alignment and domain information

>PRK00166 apaH diadenosine tetraphosphatase; Reviewed	Back alignment and domain information

>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain	Back alignment and domain information

>COG2332 CcmE Cytochrome c-type biogenesis protein CcmE [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK13165 cytochrome c-type biogenesis protein CcmE; Reviewed	Back alignment and domain information

>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain	Back alignment and domain information

>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain	Back alignment and domain information

>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed	Back alignment and domain information

>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain	Back alignment and domain information

>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional	Back alignment and domain information

>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain	Back alignment and domain information

>PF01336 tRNA_anti-codon: OB-fold nucleic acid binding domain; InterPro: IPR004365 The OB-fold (oligonucleotide/oligosaccharide-binding fold) is found in all three kingdoms and its common architecture presents a binding face that has adapted to bind different ligands	Back alignment and domain information

>PLN02533 probable purple acid phosphatase	Back alignment and domain information

>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain	Back alignment and domain information

>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain	Back alignment and domain information

>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain	Back alignment and domain information

>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain	Back alignment and domain information

>cd04489 ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold domain of Escherichia coli exodeoxyribonuclease VII (ExoVII) large subunit	Back alignment and domain information

>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain	Back alignment and domain information

>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	Back alignment and domain information

>PRK06920 dnaE DNA polymerase III DnaE; Reviewed	Back alignment and domain information

>cd04478 RPA2_DBD_D RPA2_DBD_D: A subfamily of OB folds corresponding to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32)	Back alignment and domain information

>PF04076 BOF: Bacterial OB fold (BOF) protein; InterPro: IPR005220 Proteins in this entry have an OB-fold fold (oligonucleotide/oligosaccharide binding motif)	Back alignment and domain information

>PRK05629 hypothetical protein; Validated	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		528
3flo_A		460	DNA polymerase alpha subunit B; protein-protein co	9e-13
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-09
2v6z_M		99	DNA polymerase epsilon subunit 2; DNA replication,	6e-06
3e0j_A		476	DNA polymerase subunit delta-2; DNA polymerase del	5e-05

>3flo_A DNA polymerase alpha subunit B; protein-protein complex, phosphoesterase fold, OB fold, zinc-binding motif, DNA replication; HET: DNA; 2.50A {Saccharomyces cerevisiae} Length = 460	Back alignment and structure

 Score = 69.4 bits (169), Expect = 9e-13
 Identities = 56/357 (15%), Positives = 104/357 (29%), Gaps = 77/357 (21%)

Query: 201 ASVEIDLSKAKITTGFFTENTIVVAEGEMLVDGIFQVITCGFPPLEDRDQSLKLLAGYDF 260
             V +DLS+      FF    IV  +G+      F V +    P  +             
Sbjct: 83  RRVRLDLSQVN-ELSFFL-GQIVAFKGKNANGDYFTVNSILPLPYPNS------------ 128

Query: 261 FGGGTLKKEDTLRLADLEKRAANDMFVILSDIW-LDNEEVMGKLEVVLDGFESVEVVPSL 319
                +     L+        ++   ++    +  ++   +  L+  +D   + EV P +
Sbjct: 129 ----PVSTSQELQEFQANLEGSSLKVIVTCGPYFANDNFSLELLQEFIDSINN-EVKPHV 183

Query: 320 FVFMGNF--CSHPCNLSF---------HSFSSLRLQFGKLGQMIAAHPRLKEHSRFLFIP 368
            +  G F   +HP   S              +L   F KL   I     +  H + + IP
Sbjct: 184 LIMFGPFIDITHPLIASGKLPNFPQFKTQPKTLDELFLKLFTPILK--TISPHIQTVLIP 241

Query: 369 GPDDAGPST-VLPRCALPKYLTEELQKYIPNAIFSSNPCRIKFYTQEIVFFRQDLLYRMR 427
              DA  +    P+ +L +   + LQ    N    +NP   +           D    ++
Sbjct: 242 STKDAISNHAAYPQASLIR---KALQLPKRNFKCMANPSSFQINEIYFGCSNVDTFKDLK 298

Query: 428 RSCLIPPSREETDDPFEHLVATITHQSHLCPL-PLTVQPIIWNYDHSLHLYP-------- 478
                  +        + +   I  Q    P+ P +++  I   D S             
Sbjct: 299 EVIKGGTTSSR--YRLDRVSEHILQQRRYYPIFPGSIRTRIKPKDVSTKKETNDMESKEE 356

Query: 479 -------------------------TPHAIVLADKSEQKAF--KYTGITCFNPGSFS 508
                                    +P  +++   SE + F      +   NPG F 
Sbjct: 357 KVYEHISGADLDVSYLGLTEFVGGFSPDIMIIP--SELQHFARVVQNVVVINPGRFI 411

PyMOL of 3flo

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>2v6z_M DNA polymerase epsilon subunit 2; DNA replication, DPOE2, transferase, AAA protein family; HET: DNA; NMR {Homo sapiens} Length = 99	Back alignment and structure

>3e0j_A DNA polymerase subunit delta-2; DNA polymerase delta, P66 subunit, P50 subunit, human, DNA replication, DNA-directed DNA polymerase; HET: DNA; 3.00A {Homo sapiens} Length = 476	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		528
3flo_A		460	DNA polymerase alpha subunit B; protein-protein co	100.0
3e0j_A		476	DNA polymerase subunit delta-2; DNA polymerase del	100.0
2v6z_M		99	DNA polymerase epsilon subunit 2; DNA replication,	99.42
1s3l_A		190	Hypothetical protein MJ0936; phosphodiesterase, nu	98.79
2yvt_A		260	Hypothetical protein AQ_1956; structural genomics,	98.6
2kkn_A		178	Uncharacterized protein; protein phosphatase 2A ho	98.52
1z2w_A		192	Vacuolar protein sorting 29; VPS29, retromer, phos	98.51
1su1_A		208	Hypothetical protein YFCE; structural genomics, ph	98.5
1uf3_A		228	Hypothetical protein TT1561; metallo-dependent pho	98.45
2a22_A		215	Vacuolar protein sorting 29; alpha-beta-BETA-alpha	98.44
3ib7_A		330	ICC protein; metallophosphoesterase, alpha-beta fo	98.36
4fbk_A		472	DNA repair and telomere maintenance protein NBS1,	98.27
1nnw_A		252	Hypothetical protein; structural genomics, PSI, pr	98.24
3ck2_A		176	Conserved uncharacterized protein (predicted phosp	98.18
4fbw_A		417	DNA repair protein RAD32; DNA double-strand break	98.11
3av0_A		386	DNA double-strand break repair protein MRE11; DNA	98.04
3t1i_A		431	Double-strand break repair protein MRE11A; DNA rep	97.94
3rqz_A		246	Metallophosphoesterase; PSI-biology, midwest cente	97.9
2q8u_A		336	Exonuclease, putative; structural genomics, joint	97.87
3qfm_A		270	SAPH, putative uncharacterized protein; sandwich f	97.86
3tho_B		379	Exonuclease, putative; adenosine triphosphate, bac	97.82
1xm7_A		195	Hypothetical protein AQ_1665; structural genomics,	97.57
3d03_A		274	Phosphohydrolase; glycerophosphodiesterase, metall	97.45
1ii7_A		333	MRE11 nuclease; RAD50, DNA double-strand break rep	96.95
1g5b_A		221	Serine/threonine protein phosphatase; bacteriophag	96.94
2qjc_A		262	Diadenosine tetraphosphatase, putative; putative d	96.86
2nxf_A		322	Putative dimetal phosphatase; dinuclear metal cent	96.85
2xmo_A		443	LMO2642 protein; phosphodiesterase, hydrolase; 1.7	96.54
3rl5_A		296	Metallophosphoesterase mpped2; alpha-beta fold, me	94.67
1ute_A		313	Protein (II purple acid phosphatase); tartrate res	94.6
1sr3_A		136	APO-CCME; OB fold, beta barrel, flexible C-termina	94.42
1j6q_A		136	Cytochrome C maturation protein E; all-beta protei	94.02
2kct_A		94	Cytochrome C-type biogenesis protein CCME; solutio	93.83
2ie4_C		309	PP2A-alpha;, serine/threonine-protein phosphatase	92.83
2dfj_A		280	Diadenosinetetraphosphatase; helices and strands m	92.35
1fjm_A		330	Protein serine/threonine phosphatase-1 (alpha ISO	90.47
1wao_1		477	Serine/threonine protein phosphatase 5; hydrolase,	90.31
3tgh_A		342	Glideosome-associated protein 50; phosphatase fold	90.13
2z72_A		342	Protein-tyrosine-phosphatase; cold-active enzyme,	88.4
1xzw_A		426	Purple acid phosphatase; hydrolase; HET: NAG FUC M	88.13
2k50_A		115	Replication factor A related protein; uncharacteri	87.63
2qfp_A		424	Purple acid phosphatase; binuclear, Fe-Zn, hydrola	87.62
4gop_B		136	Putative uncharacterized protein; OB fold, ssDNA b	86.06
3e7a_A		299	PP-1A, serine/threonine-protein phosphatase PP1-al	85.29
3icf_A		335	PPT, serine/threonine-protein phosphatase T; IRO m	85.27
3h63_A		315	Serine/threonine-protein phosphatase 5; metalloenz	84.18
3kdf_D		132	Replication protein A 32 kDa subunit; wheat GERM c	83.95
1aui_A		521	Calcineurin, serine/threonine phosphatase 2B; hydr	82.87
1nnx_A		109	Protein YGIW; structural genomics, hypothetical pr	82.5
3mxn_B		150	RECQ-mediated genome instability protein 2; bloom	82.09
2k75_A		106	Uncharacterized protein TA0387; closed beta barrel	81.88
3ll8_A		357	Serine/threonine-protein phosphatase 2B catalytic	80.76

>3flo_A DNA polymerase alpha subunit B; protein-protein complex, phosphoesterase fold, OB fold, zinc motif, DNA replication, nucleus; HET: DNA; 2.50A {Saccharomyces cerevisiae}	Back alignment and structure

Probab=100.00  E-value=8.7e-46  Score=391.91  Aligned_cols=352  Identities=16%  Similarity=0.230  Sum_probs=255.3

Q ss_pred             ChhHHHHHHHHHHHHHHHHHhccCCCCCCccccccCCCCccceeecccccCCCCcEEEEEEEEEcC---CCc-----EEE
Q 009713          125 EASAKAALYRDRFLLLFQRVSRDQHFSRPSFDVVNSEFGSCEISTIQSLVGQTGRRWVMGVISQLE---DGH-----FYL  196 (528)
Q Consensus       125 ~~~~k~~~f~~Ry~~l~~rl~R~~~F~~~~~~~~~~~~~~~~it~I~~Llg~~g~~~vlGml~~~~---~g~-----~~L  196 (528)
                      .-.++++++.+|-....+.+..+-......|            .+.  ..-++..++++|+|+++.   +|+     +.|
T Consensus         8 kl~e~~~vLd~~I~~~~~~~~~~~~~~~~~f------------~~p--~~~sq~~v~~vGRI~~Ds~~~egkLn~~Sl~L   73 (460)
T 3flo_A            8 NLQEASDVLDDQIESFTKIIQNHYKLSPNDF------------ADP--TIQSQSEIYAVGRIVPDSPTYDKFLNPESLSL   73 (460)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHTCCGGGB------------CCT--TSCCSSCEEEEEEEEESSSSCCSCCCTTSEEE
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhCCCcccc------------CCc--ccCccccEEEEEEEeeCCCCCCCCcchhheEE
Confidence            3556777777777777776665421110001            111  122556789999999886   776     489


Q ss_pred             EeC-----CcEEEEEeccccccceeeccCeEEEEEEEEeeCCeEEEEEecCCCCCCchhhhhhhcCcccCCCCCCchhhh
Q 009713          197 EDL-----AASVEIDLSKAKITTGFFTENTIVVAEGEMLVDGIFQVITCGFPPLEDRDQSLKLLAGYDFFGGGTLKKEDT  271 (528)
Q Consensus       197 ED~-----sg~V~Ldls~~~~~~g~f~~G~vV~veG~~~~~g~F~V~~i~~Pp~e~r~~s~~~~~~~d~fG~~~~~~~~~  271 (528)
                      |-.     ..+|+||+++.. +.++ +|||||+++|+++.|+.|.|++|.-+|.-+...+               +..+ 
T Consensus        74 E~sr~~g~G~rV~Ldls~l~-~~sl-FPGQIVav~G~N~~G~~f~v~ei~~~P~~~~p~s---------------~~~~-  135 (460)
T 3flo_A           74 ETSRMGGVGRRVRLDLSQVN-ELSF-FLGQIVAFKGKNANGDYFTVNSILPLPYPNSPVS---------------TSQE-  135 (460)
T ss_dssp             ECCHHHHTTCEEEEECTTCC-CEEE-CTTCEEEEEEECSSSSCEEEEEECCCCCCCCCEE---------------EHHH-
T ss_pred             EeccccCCCeEEEeecccCC-ceee-cCCCEEEEEEEcCCCCEEEEeeeccCCCCCCCCC---------------CHHH-
Confidence            954     349999999864 3455 5999999999998888999999975554322111               1111 


Q ss_pred             HHHHHH-HHh-ccCCeEEEEeCCccCcHh-HHHHHHHHHhcccCCCCCCeEEEEEccCCCCCCC--CCC---------cc
Q 009713          272 LRLADL-EKR-AANDMFVILSDIWLDNEE-VMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCN--LSF---------HS  337 (528)
Q Consensus       272 ~~l~~~-e~~-~~~~~~v~lSdv~ld~~~-~le~L~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~--~~~---------~~  337 (528)
                        +... ++. ....+++++|++|+.+.+ .+++|.+|++++.+. .+|+++||||||+|..+.  ..+         ..
T Consensus       136 --l~~~~~~~~~~~l~ivvAsGPyT~sdnl~yepL~~Ll~~v~~~-~kPdvLIL~GPFvD~~hp~i~~G~~p~~~~~~~~  212 (460)
T 3flo_A          136 --LQEFQANLEGSSLKVIVTCGPYFANDNFSLELLQEFIDSINNE-VKPHVLIMFGPFIDITHPLIASGKLPNFPQFKTQ  212 (460)
T ss_dssp             --HHHHHHHHTSSCEEEEEEESCCSCSSCCCCHHHHHHHHHCCCC-CCCSEEEEESCSSBTTCHHHHHTCCCCCTTCSSC
T ss_pred             --hhhhhhhccCCCcEEEEEeCCccCCCccChHHHHHHHHHHHhc-cCCCEEEEecCcccccCcccccCccccccccccc
Confidence              1111 111 245689999999988764 479999999987662 379999999999987421  111         11


Q ss_pred             hhHHHHHHHHH-HHHHHcCCCCCCceeEEEecCCCCCCC-CCCCCCCCCchhhHHHHhhhCC-ceEEecCCeEEEEccEE
Q 009713          338 FSSLRLQFGKL-GQMIAAHPRLKEHSRFLFIPGPDDAGP-STVLPRCALPKYLTEELQKYIP-NAIFSSNPCRIKFYTQE  414 (528)
Q Consensus       338 ~~~~~~~f~~l-a~~l~~~p~l~~~~~~v~VPG~~Dp~~-~~~lPqpplp~~~~~~l~~~~~-n~~~~sNPcri~~~~~e  414 (528)
                      ..+|.+.|+++ +.+|.+   +..+++||||||++|+++ ..+||||||++...    ...+ |++|+||||+|++++++
T Consensus       213 ~~t~~~lF~~~i~~il~~---l~~~t~VVlVPS~rD~~~~~~v~PQPpf~~k~l----~l~k~nv~~~sNPc~~~in~v~  285 (460)
T 3flo_A          213 PKTLDELFLKLFTPILKT---ISPHIQTVLIPSTKDAISNHAAYPQASLIRKAL----QLPKRNFKCMANPSSFQINEIY  285 (460)
T ss_dssp             CSSHHHHHHHHTHHHHTT---SCTTSEEEEECCTTBTTCSCCSBSBCCCCTTTT----TCCTTTEEECCBSEEEEETTEE
T ss_pred             ccCHHHHHHHHHHHHHHh---ccCCCEEEEeCCcccccCCCCCcCCCCCChhhh----cCCcccEEEeCCCEEEEECCEE
Confidence            46889999975 677764   567899999999999984 58999999997532    2234 99999999999999999


Q ss_pred             EEEEehHHHHHHhhcccCCCCCCCCCChHHHHHHHHhcCCCCCCCCCCCccccC--------------------CCCC--
Q 009713          415 IVFFRQDLLYRMRRSCLIPPSREETDDPFEHLVATITHQSHLCPLPLTVQPIIW--------------------NYDH--  472 (528)
Q Consensus       415 Ivi~rdDl~~~l~r~~i~~p~~~~~~d~~~~l~ktiL~Q~hL~Pl~~~~~pi~w--------------------~~d~--  472 (528)
                      |++++.|++.+|+ +....+. ....|++.++++|||+||||||++|...++.|                    +|++  
T Consensus       286 igvss~Dil~~L~-e~~~~~~-~~~~dr~~Rl~~hlL~Qr~~yPL~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (460)
T 3flo_A          286 FGCSNVDTFKDLK-EVIKGGT-TSSRYRLDRVSEHILQQRRYYPIFPGSIRTRIKPKDVSTKKETNDMESKEEKVYEHIS  363 (460)
T ss_dssp             EEECCSCHHHHCC-CEEECHH-HHHSCHHHHHHHHHHHHTBSCCCSSCCEEC-------------------------CCE
T ss_pred             EEEEcHHHHHHHH-HhhcCCC-CccccHHHHHHHHHhhcCcccCcCCCcccccccccccccccccccccccccccccccC
Confidence            9999999999996 3332211 12348999999999999999999999988887                    2221  


Q ss_pred             --cc--------cc--cCCCcEEEecCCCCcceEEeCCeEEEcCCCCCC---C-cEEEEEECCC
Q 009713          473 --SL--------HL--YPTPHAIVLADKSEQKAFKYTGITCFNPGSFSS---D-STFVAYRPCT  520 (528)
Q Consensus       473 --~L--------~L--~p~Pdvlil~d~~~~f~~~y~gc~~vNpGsf~~---~-~sf~~y~p~~  520 (528)
                        .|        .+  +.+||+||+++...+|+..++||+|||||+|..   + |||+...-..
T Consensus       364 g~~Ldv~yl~l~e~~~~~~PDilI~PS~l~~F~kvv~~~v~INPG~l~k~~~g~GTya~l~i~~  427 (460)
T 3flo_A          364 GADLDVSYLGLTEFVGGFSPDIMIIPSELQHFARVVQNVVVINPGRFIRATGNRGSYAQITVQC  427 (460)
T ss_dssp             ECCBCGGGGGGGBCGGGCCCSEEECCCSSCCEEEEETTEEEEECCCSBCTTSCBCEEEEEEECC
T ss_pred             CcccceeccchhhcccCCCCCEEEcCCCCcCceEEeCCEEEECcccccCCCCCCceeEEEEEeC
Confidence              12        22  789999999999999999999999999999953   3 9998665443

PyMOL of 3flo

>3e0j_A DNA polymerase subunit delta-2; DNA polymerase delta, P66 subunit, P50 subunit, human, DNA replication, DNA-directed DNA polymerase; HET: DNA; 3.00A {Homo sapiens}	Back alignment and structure

>2v6z_M DNA polymerase epsilon subunit 2; DNA replication, DPOE2, transferase, AAA protein family; HET: DNA; NMR {Homo sapiens}	Back alignment and structure

>1s3l_A Hypothetical protein MJ0936; phosphodiesterase, nuclease, structural genomics, BSGC struc funded by NIH; 2.40A {Methanocaldococcus jannaschii} SCOP: d.159.1.7 PDB: 1s3m_A 1s3n_A 2ahd_A	Back alignment and structure

>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.60A {Aquifex aeolicus} SCOP: d.159.1.6	Back alignment and structure

>2kkn_A Uncharacterized protein; protein phosphatase 2A homologue, structural genomics, PSI- 2, protein structure initiative; NMR {Thermotoga maritima}	Back alignment and structure

>1z2w_A Vacuolar protein sorting 29; VPS29, retromer, phosphatase, manganese, protein transport; 2.00A {Mus musculus} SCOP: d.159.1.7 PDB: 1z2x_A 3lh6_A 3lh7_A 3psn_A 3pso_A 1w24_A 2r17_A	Back alignment and structure

>1su1_A Hypothetical protein YFCE; structural genomics, phosphoesterase, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.25A {Escherichia coli} SCOP: d.159.1.7	Back alignment and structure

>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6	Back alignment and structure

>2a22_A Vacuolar protein sorting 29; alpha-beta-BETA-alpha sandwich, structural genomics, structural genomics consortium, SGC, protein transport; 2.20A {Cryptosporidium parvum} SCOP: d.159.1.7	Back alignment and structure

>3ib7_A ICC protein; metallophosphoesterase, alpha-beta fold, swapped-dimer, HYDR; HET: BTB; 1.60A {Mycobacterium tuberculosis} PDB: 3ib8_A* 2hy1_A 2hyp_A 2hyo_A	Back alignment and structure

>4fbk_A DNA repair and telomere maintenance protein NBS1, protein RAD32 chimeric protein; DNA double-strand break repair, nuclease; HET: DNA; 2.38A {Schizosaccharomyces pombe} PDB: 4fbq_A*	Back alignment and structure

>1nnw_A Hypothetical protein; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 1.90A {Pyrococcus furiosus} SCOP: d.159.1.5 PDB: 2gju_A	Back alignment and structure

>3ck2_A Conserved uncharacterized protein (predicted phosphoesterase COG0622); structural genomics, predicted phosphodiesterase, PSI-2; HET: SRT; 2.30A {Streptococcus pneumoniae} SCOP: d.159.1.7	Back alignment and structure

>4fbw_A DNA repair protein RAD32; DNA double-strand break repair, nuclease, hydrolase; HET: DNA; 2.20A {Schizosaccharomyces pombe} PDB: 4fcx_B*	Back alignment and structure

>3av0_A DNA double-strand break repair protein MRE11; DNA repair, calcineurin-like phosphoesterase, ABC transporte domain-like; HET: DNA AGS; 3.10A {Methanocaldococcus jannaschii} PDB: 3auz_A*	Back alignment and structure

>3t1i_A Double-strand break repair protein MRE11A; DNA repair, MRN complex, metallophosphatase, exonuclease, endonuclease, RAD50, NBS1, hydrolase; 3.00A {Homo sapiens}	Back alignment and structure

>3rqz_A Metallophosphoesterase; PSI-biology, midwest center for structural genomics, MCSG, Zn binding, hydrolase; 1.95A {Sphaerobacter thermophilus} SCOP: d.159.1.0	Back alignment and structure

>2q8u_A Exonuclease, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.20A {Thermotoga maritima MSB8} PDB: 3thn_A	Back alignment and structure

>3qfm_A SAPH, putative uncharacterized protein; sandwich fold, asymmetric AP4A hydrolase, phosphodiesterase, binding, Mn2+ binding, hydrolase; 1.90A {Streptococcus pneumoniae} PDB: 3qfn_A 3qfo_A*	Back alignment and structure

>3tho_B Exonuclease, putative; adenosine triphosphate, bacterial proteins, DNA breaks, DOUB stranded, DNA repair, DNA repair enzymes; HET: ADP; 2.61A {Thermotoga maritima} PDB: 3qg5_C	Back alignment and structure

>1xm7_A Hypothetical protein AQ_1665; structural genomics, protein structure initi midwest center for structural genomics, PSI, MCSG, unknown; 2.40A {Aquifex aeolicus} SCOP: d.159.1.8	Back alignment and structure

>3d03_A Phosphohydrolase; glycerophosphodiesterase, metallohydrolase, phosphatase, metal ION; 1.90A {Enterobacter aerogenes} SCOP: d.159.1.11 PDB: 2zoa_A 2zo9_B 2dxn_A 2dxl_A	Back alignment and structure

>1ii7_A MRE11 nuclease; RAD50, DNA double-strand break repair, DAMP, manganese, replication; HET: DA; 2.20A {Pyrococcus furiosus} SCOP: d.159.1.4 PDB: 3dsc_A* 3dsd_A* 1s8e_A	Back alignment and structure

>1g5b_A Serine/threonine protein phosphatase; bacteriophage lambda, Ser/Thr protein phosphatase, ppase, manganese, sulfate, viral protein; 2.15A {Enterobacteria phage lambda} SCOP: d.159.1.3	Back alignment and structure

>2qjc_A Diadenosine tetraphosphatase, putative; putative diadenosine tetraphosphatase, monomer, PSI- 2, protein structure initiative, nysgrc; 2.05A {Trypanosoma brucei}	Back alignment and structure

>2nxf_A Putative dimetal phosphatase; dinuclear metal center phosphatase, metalloprotein, metallophosphoesterase, protein structure initiative; 1.70A {Danio rerio} SCOP: d.159.1.12	Back alignment and structure

>2xmo_A LMO2642 protein; phosphodiesterase, hydrolase; 1.70A {Listeria monocytogenes}	Back alignment and structure

>3rl5_A Metallophosphoesterase mpped2; alpha-beta fold, metallophosphodiesterase, active site mutan nucleotide polymorphism, hydrolase; 1.26A {Rattus norvegicus} PDB: 3rl3_A* 3rl4_A*	Back alignment and structure

>1ute_A Protein (II purple acid phosphatase); tartrate resistant acid phosphatase metalloenzyme, uteroferrin, hydrolase; HET: NAG; 1.55A {Sus scrofa} SCOP: d.159.1.1 PDB: 1war_A* 2bq8_X 1qfc_A* 1qhw_A*	Back alignment and structure

>1sr3_A APO-CCME; OB fold, beta barrel, flexible C-terminal domain, chaperone; NMR {Escherichia coli} SCOP: b.40.9.1	Back alignment and structure

>1j6q_A Cytochrome C maturation protein E; all-beta protein, heme delivery,cytochrome C maturation, OB- (oligonucleotide binding)fold; NMR {Shewanella putrefaciens} SCOP: b.40.9.1 PDB: 1lm0_A	Back alignment and structure

>2kct_A Cytochrome C-type biogenesis protein CCME; solution structure, heme chaperone, cytochrome C biogenesis, OB-fold domain, NESG, PSI-2; NMR {Desulfovibrio vulgaris str}	Back alignment and structure

>2ie4_C PP2A-alpha;, serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform; protein-protein complex, heat repeat, signaling protein; HET: OKA; 2.60A {Homo sapiens} SCOP: d.159.1.3 PDB: 2npp_C* 3dw8_C* 3k7v_C* 3k7w_C* 3c5w_C 2ie3_C* 3fga_C* 2iae_C* 3p71_C* 2nym_C* 2nyl_C*	Back alignment and structure

>2dfj_A Diadenosinetetraphosphatase; helices and strands mixture, hydrolase; 2.72A {Shigella flexneri 2A}	Back alignment and structure

>1fjm_A Protein serine/threonine phosphatase-1 (alpha ISO 1); hydrolase, toxin, hydrolase-hydrolase inhibitor complex; HET: 1ZN; 2.10A {Oryctolagus cuniculus} SCOP: d.159.1.3	Back alignment and structure

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3	Back alignment and structure

>3tgh_A Glideosome-associated protein 50; phosphatase fold, NOT A phosphatase, motor protein, structur protein, membrane protein; 1.70A {Plasmodium falciparum 3D7}	Back alignment and structure

>2z72_A Protein-tyrosine-phosphatase; cold-active enzyme, psychrophIle, hydrolase; 1.10A {Shewanella SP} PDB: 1v73_A 2zbm_A	Back alignment and structure

>1xzw_A Purple acid phosphatase; hydrolase; HET: NAG FUC MAN; 2.50A {Ipomoea batatas} SCOP: b.1.12.1 d.159.1.1	Back alignment and structure

>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}	Back alignment and structure

>2qfp_A Purple acid phosphatase; binuclear, Fe-Zn, hydrolase; HET: NAG NDG; 2.20A {Phaseolus vulgaris} SCOP: b.1.12.1 d.159.1.1 PDB: 2qfr_A* 1kbp_A* 3kbp_A* 4kbp_A*	Back alignment and structure

>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}	Back alignment and structure

>3e7a_A PP-1A, serine/threonine-protein phosphatase PP1-alpha Ca subunit; carbohydrate metabolism, cell cycle, cell division; HET: 1ZN; 1.63A {Homo sapiens} SCOP: d.159.1.3 PDB: 3e7b_A* 3egg_A* 3egh_A* 3hvq_A 3v4y_A* 3n5u_A 1jk7_A* 1it6_A* 2bcd_A* 2bdx_A* 2o8g_A 2o8a_A 1u32_A* 1s70_A*	Back alignment and structure

>3icf_A PPT, serine/threonine-protein phosphatase T; IRO metalloprotein, structural genomics, PSI-2, protein structu initiative; 2.30A {Saccharomyces cerevisiae}	Back alignment and structure

>3h63_A Serine/threonine-protein phosphatase 5; metalloenzyme, inhibitors, drug design, cytoplasm, hydrolase, iron, manganese, metal-binding, nucleus; HET: NHC; 1.30A {Homo sapiens} SCOP: d.159.1.3 PDB: 3h60_A* 3h61_A* 3h62_C* 3h64_A* 3h66_A 3h67_A* 3h68_A* 3h69_A* 1s95_A	Back alignment and structure

>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B	Back alignment and structure

>1aui_A Calcineurin, serine/threonine phosphatase 2B; hydrolase, immunosuppression; 2.10A {Homo sapiens} SCOP: d.159.1.3	Back alignment and structure

>1nnx_A Protein YGIW; structural genomics, hypothetical protein, OB-fold, structure 2 function project, S2F, unknown function; 1.45A {Escherichia coli} SCOP: b.40.10.1	Back alignment and structure

>3mxn_B RECQ-mediated genome instability protein 2; bloom syndrome, helicase, RMI, topoisomerase, replication PR replication; 1.55A {Homo sapiens} PDB: 4day_B 3nbh_B	Back alignment and structure

>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}	Back alignment and structure

>3ll8_A Serine/threonine-protein phosphatase 2B catalytic alpha isoform; protein-peptide docking, protein targeting, AKA beta-augmentation, calmodulin-binding, membrane, hydrolase; 2.00A {Homo sapiens} PDB: 2p6b_A 1m63_A* 1tco_A* 1mf8_A* 2jog_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		528
d1s3la_		165	Putative phosphodiesterase MJ0936 {Methanococcus j	98.75
d1uf3a_		228	Hypothetical protein TT1561 {Thermus thermophilus	98.64
d2yvta1		257	Uncharacterized protein Aq_1956 {Aquifex aeolicus	98.63
d1su1a_		184	Phosphodiesterase yfcE {Escherichia coli [TaxId: 5	98.59
d2a22a1		193	Vacuolar protein sorting 29, VPS29 {Cryptosporidiu	98.52
d1z2wa1		182	Vacuolar protein sorting 29, VPS29 {Mouse (Mus mus	98.46
d1nnwa_		251	Hypothetical protein PF1291 {Archaeon Pyrococcus f	98.36
d3ck2a1		173	Uncharacterized protein SP1879 {Streptococcus pneu	98.21
d2hy1a1		256	Rv0805 cyclic nucleotide phosphodiesterase {Mycoba	98.14
d1ii7a_		333	Mre11 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	98.09
d3d03a1		271	Glycerophosphodiesterase GpdQ {Enterobacter aeroge	97.76
d1xm7a_		188	Hypothetical protein aq_1666 {Aquifex aeolicus [Ta	97.25
d2nxfa1		320	Uncharacterized C17orf48 homolog zgc:64213 {Zebraf	96.25
d1sr3a_		114	Heme chaperone CcmE {Escherichia coli [TaxId: 562]	93.83
d1j6qa_		100	Heme chaperone CcmE {Shewanella putrefaciens [TaxI	93.53
d1g5ba_		219	lambda ser/thr protein phosphatase {Bacteriophage	91.5
d1nnxa_		106	Hypothetical protein YgiW {Escherichia coli [TaxId	89.32
d2qfra2		312	Plant purple acid phosphatase, catalytic domain {K	88.57
d1utea_		302	Mammalian purple acid phosphatase {Pig (Sus scrofa	87.96
d1e1oa1		143	Lysyl-tRNA synthetase (LysRS) {Escherichia coli, g	82.54

>d1s3la_ d.159.1.7 (A:) Putative phosphodiesterase MJ0936 {Methanococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: YfcE-like
domain: Putative phosphodiesterase MJ0936
species: Methanococcus jannaschii [TaxId: 2190]

Probab=98.75  E-value=2.4e-07  Score=82.94  Aligned_cols=158  Identities=13%  Similarity=0.119  Sum_probs=105.1

Q ss_pred             eEEEEeCCccCcHhHHHHHHHHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHHcCCCCCCceeE
Q 009713          285 MFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSRF  364 (528)
Q Consensus       285 ~~v~lSdv~ld~~~~le~L~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~~~p~l~~~~~~  364 (528)
                      ++.++||+| +   .+++|+++++.+...  .|+.+|++||++..         ..       + +.+.+     ...++
T Consensus         2 kI~iiSDiH-g---n~~al~~vl~~~~~~--~~D~ii~~GD~~~~---------~~-------~-~~l~~-----~~~~~   53 (165)
T d1s3la_           2 KIGIMSDTH-D---HLPNIRKAIEIFNDE--NVETVIHCGDFVSL---------FV-------I-KEFEN-----LNANI   53 (165)
T ss_dssp             EEEEECCCT-T---CHHHHHHHHHHHHHS--CCSEEEECSCCCST---------HH-------H-HHGGG-----CSSEE
T ss_pred             EEEEEEeCC-C---CHHHHHHHHHHHHhc--CCCEEEECCCccCH---------HH-------H-HHHhh-----cCccE
Confidence            478999999 3   345666666655443  69999999999842         11       1 12221     23589


Q ss_pred             EEecCCCCCCCCCCCCCCCCchhhHHHHhhhCCceEEecCCeEEEEccEEEEEEehHHHHHHhhcccCCCCCCCCCChHH
Q 009713          365 LFIPGPDDAGPSTVLPRCALPKYLTEELQKYIPNAIFSSNPCRIKFYTQEIVFFRQDLLYRMRRSCLIPPSREETDDPFE  444 (528)
Q Consensus       365 v~VPG~~Dp~~~~~lPqpplp~~~~~~l~~~~~n~~~~sNPcri~~~~~eIvi~rdDl~~~l~r~~i~~p~~~~~~d~~~  444 (528)
                      +.|.||+|...          ........ ........+-+.++.+.+..|.++|..--                 +..+
T Consensus        54 ~~v~GN~D~~~----------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~l~Hg~~~-----------------~~~~  105 (165)
T d1s3la_          54 IATYGNNDGER----------CKLKEWLK-DINEENIIDDFISVEIDDLKFFITHGHHQ-----------------SVLE  105 (165)
T ss_dssp             EEECCTTCCCH----------HHHHHHHH-HHCTTCEEESEEEEEETTEEEEEEESCCH-----------------HHHH
T ss_pred             EEEcccccccc----------hhhhHhhh-hhcccccCChhhceEECCcEEEEEECCcc-----------------cHHH
Confidence            99999999531          01111111 12233344567788999999999986210                 1112


Q ss_pred             HHHHHHhcCCCCCCCCCCCccccCCCCCcccccCCCcEEEecCCCCcceEEeCCeEEEcCCCCC----CCcEEEEEECCC
Q 009713          445 HLVATITHQSHLCPLPLTVQPIIWNYDHSLHLYPTPHAIVLADKSEQKAFKYTGITCFNPGSFS----SDSTFVAYRPCT  520 (528)
Q Consensus       445 ~l~ktiL~Q~hL~Pl~~~~~pi~w~~d~~L~L~p~Pdvlil~d~~~~f~~~y~gc~~vNpGsf~----~~~sf~~y~p~~  520 (528)
                      .+++                            ..-+|+++.||+|.++...++|..++||||..    ...+|+.|+..+
T Consensus       106 ~~~~----------------------------~~~~d~v~~GHtH~~~~~~~~~~~~iNPGSvg~p~~~~~s~~ild~~~  157 (165)
T d1s3la_         106 MAIK----------------------------SGLYDVVIYGHTHERVFEEVDDVLVINPGECCGYLTGIPTIGILDTEK  157 (165)
T ss_dssp             HHHH----------------------------HSCCSEEEEECSSCCEEEEETTEEEEECCCSSCTTTSCCEEEEEETTT
T ss_pred             HHhh----------------------------cCCCCEEEECCcCcceEEEECCEEEEECCCCCCCCCCCCEEEEEEccC
Confidence            2211                            12358999999999999999999999999984    235899999999


Q ss_pred             CeEEec
Q 009713          521 QEVEFS  526 (528)
Q Consensus       521 ~~~e~~  526 (528)
                      ++++.-
T Consensus       158 ~~~~~i  163 (165)
T d1s3la_         158 KEYREI  163 (165)
T ss_dssp             TEEEEE
T ss_pred             CeEEEE
Confidence            998863

PyMOL of d1s3la_

>d1uf3a_ d.159.1.6 (A:) Hypothetical protein TT1561 {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d2yvta1 d.159.1.6 (A:4-260) Uncharacterized protein Aq_1956 {Aquifex aeolicus [TaxId: 63363]}	Back information, alignment and structure

>d1su1a_ d.159.1.7 (A:) Phosphodiesterase yfcE {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2a22a1 d.159.1.7 (A:4-196) Vacuolar protein sorting 29, VPS29 {Cryptosporidium parvum [TaxId: 5807]}	Back information, alignment and structure

>d1z2wa1 d.159.1.7 (A:1-182) Vacuolar protein sorting 29, VPS29 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1nnwa_ d.159.1.5 (A:) Hypothetical protein PF1291 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	Back information, alignment and structure

>d3ck2a1 d.159.1.7 (A:1-173) Uncharacterized protein SP1879 {Streptococcus pneumoniae [TaxId: 1313]}	Back information, alignment and structure

>d2hy1a1 d.159.1.11 (A:10-265) Rv0805 cyclic nucleotide phosphodiesterase {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1ii7a_ d.159.1.4 (A:) Mre11 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	Back information, alignment and structure

>d3d03a1 d.159.1.11 (A:1-271) Glycerophosphodiesterase GpdQ {Enterobacter aerogenes [TaxId: 548]}	Back information, alignment and structure

>d1xm7a_ d.159.1.8 (A:) Hypothetical protein aq_1666 {Aquifex aeolicus [TaxId: 63363]}	Back information, alignment and structure

>d2nxfa1 d.159.1.12 (A:3-322) Uncharacterized C17orf48 homolog zgc:64213 {Zebrafish (Danio rerio) [TaxId: 7955]}	Back information, alignment and structure

>d1sr3a_ b.40.9.1 (A:) Heme chaperone CcmE {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1j6qa_ b.40.9.1 (A:) Heme chaperone CcmE {Shewanella putrefaciens [TaxId: 24]}	Back information, alignment and structure

>d1g5ba_ d.159.1.3 (A:) lambda ser/thr protein phosphatase {Bacteriophage lambda [TaxId: 10710]}	Back information, alignment and structure

>d1nnxa_ b.40.10.1 (A:) Hypothetical protein YgiW {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2qfra2 d.159.1.1 (A:121-432) Plant purple acid phosphatase, catalytic domain {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}	Back information, alignment and structure

>d1utea_ d.159.1.1 (A:) Mammalian purple acid phosphatase {Pig (Sus scrofa) [TaxId: 9823]}	Back information, alignment and structure

>d1e1oa1 b.40.4.1 (A:11-153) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]}	Back information, alignment and structure