Citrus Sinensis ID: 009717

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------
MEKRIKSASLLLDASLGHCFVHGLEHQNANVIYNCLRAYAAIDNTRNAEEIFCNTVVAPLMQKIIPHGPSEALAGASGDELESDYEQIKQCVEKDCKFLLDISSAENSGLHVFDFLANSILKEVLSAIQKGKPGAFSPGRPTQFLRNYKSSLDFLAYLEGYCPSRSAVAKFRAEAIYVEFMKQWNVGVYFSLRFQEIAGALDSALTAASLAPVQNSNSNQGNSQALTLKQSVTLLDSMKSCWRQDVFLLPCSDKFLRLSLQLLSRYSNWLSSGLAARSSGHASFNPGNEWAISAAPDDFIYIIHDINCLATEVSGDYLTHVLQLLSSCSSEVLDLVKQSILEGGKSLSSMLPVVINTIVDALVEKAVEDLRQLKGITATYRMTNKPLPVRHSPYVSGVLRPLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHELAAELISVARKTESSLLKIRQGAQRRAGASSDVSDHNVSDTDKICMQLFLDIQEYGRSLAALGVQAADIPPYRSLWQCVAPSDRQSLIKF
cHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHcHHHHHHccccccccccHHHHccccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHccccccccccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHcccccccccccc
ccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHccHHHHHHHHHccccHEEEEHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHccccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccHHcHHHHHHHHHHHHHHHHHccccc
MEKRIKSASLLLDASLGHCFVHGLEHQNANVIYNCLRAYAAIDNTRNAEEIFCNTVVAPLmqkiiphgpsealagasgdelESDYEQIKQCVEKDCKFLLDISsaensglhvFDFLANSILKEVLSAIqkgkpgafspgrptqFLRNYKSSLDFLAYLEGYCPSRSAVAKFRAEAIYVEFMKQWNVGVYFSLRFQEIAGALDSALTAaslapvqnsnsnqgnsqALTLKQSVTLLDSMkscwrqdvfllpcsdKFLRLSLQLLSRYSNWLSSGLaarssghasfnpgnewaisaapddfiyIIHDINCLATEVSGDYLTHVLQLLSSCSSEVLDLVKQSILEGGKSLSSMLPVVINTIVDALVEKAVEDLRQLKGITAtyrmtnkplpvrhspyvsgvlrpLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHELAAELISVARKTESSLLKIRQGAqrragassdvsdhnvsdtDKICMQLFLDIQEYGRSLAALgvqaadippyrslwqcvapsdrqslikf
MEKRIKSASLLLDASLGHCFVHGLEHQNANVIYNCLRAYAAIDNTRNAEEIFCNTVVAPLMQKIIPHGPSEALAGASGDELESDYEQIKQCVEKDCKFLLDISSAENSGLHVFDFLANSILKEVLSAIQkgkpgafspgrpTQFLRNYKSSLDFLAYLEGYCPSRSAVAKFRAEAIYVEFMKQWNVGVYFSLRFQEIAGALDSALTAASLAPVQnsnsnqgnsQALTLKQSVTLLDSMKSCWRQDVFLLPCSDKFLRLSLQLLSRYSNWLSSGLAARSSGHASFNPGNEWAISAAPDDFIYIIHDINCLATEVSGDYLTHVLQLLSSCSSEVLDLVKQSILEGGKSLSSMLPVVINTIVDALVEKAVEDLRQLKGItatyrmtnkplpvrhspyvsgVLRPLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHELAAELISVARKTESSLLKIRQgaqrragassdvsdhnvsDTDKICMQLFLDIQEYGRSLAALGVQAADIPPYRSLWQCVApsdrqslikf
MEKRIKSASLLLDASLGHCFVHGLEHQNANVIYNCLRAYAAIDNTRNAEEIFCNTVVAPLMQKIIPHGPSEALAGASGDELESDYEQIKQCVEKDCKFLLDISSAENSGLHVFDFLANSILKEVLSAIQKGKPGAFSPGRPTQFLRNYKSSLDFLAYLEGYCPSRSAVAKFRAEAIYVEFMKQWNVGVYFSLRFQEIagaldsaltaaslaPVqnsnsnqgnsqALTLKQSVTLLDSMKSCWRQDVFLLPCSDKFlrlslqllsrYSNWLSSGLAARSSGHASFNPGNEWAISAAPDDFIYIIHDINCLATEVSGDYLTHVLQLLSSCSSEVLDLVKQSILEGGKSLSSMLPVVINTIVDALVEKAVEDLRQLKGITATYRMTNKPLPVRHSPYVSGVLRPLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHELAAELISVARKTESSLLKIRQGAQRRAGASSDVSDHNVSDTDKICMQLFLDIQEYGRSLAALGVQAADIPPYRSLWQCVAPSDRQSLIKF
*********LLLDASLGHCFVHGLEHQNANVIYNCLRAYAAIDNTRNAEEIFCNTVVAPLMQKIIPH*****************YEQIKQCVEKDCKFLLDISSAENSGLHVFDFLANSILKEVLSAIQKGK***F****PTQFLRNYKSSLDFLAYLEGYCPSRSAVAKFRAEAIYVEFMKQWNVGVYFSLRFQEIAGALDSALTA********************LKQSVTLLDSMKSCWRQDVFLLPCSDKFLRLSLQLLSRYSNWLSSGLAARS*GHASFNPGNEWAISAAPDDFIYIIHDINCLATEVSGDYLTHVLQLLSSCSSEVLDLVKQSILEGGKSLSSMLPVVINTIVDALVEKAVEDLRQLKGITATYRMTNKPLPVRHSPYVSGVLRPLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHELAAELISVAR******************************TDKICMQLFLDIQEYGRSLAALGVQAADIPPYRSLWQCVA**********
*EKRIKSASLLLDASLGHCFVHGLEHQNANVIYNCLRAYAAIDNTRNAEEIFCNTVVAPLMQKIIP****************SDYEQIKQCVEKDCKFLLDISSA**SGLHVFDFLANSILKEVLSAIQKGKPGAFSPGRPTQFLRNYKSSLDFLAYLEGYCPSRSAVAKFRAEAIYVEFMKQWNVGVYFSLRFQEIAGALDSALTA****************QALTLKQSVTLLDSMKSCWRQDVFLLPCSDKFLRLSLQLLSRYSNWLSS***********************PDDFIYIIHDINCLATEVSGDYLTHVLQLLSSCSSEVLDLVKQSILEGGKSLSSMLPVVINTIVDALVEKAVEDLRQLKGITATYRM***P*PVRHSPYVSGVLRPLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHELAAELISVARK*******************************KICMQLFLDIQEYGRSLAALGVQAADIPPYRSLWQCVAPSD*******
MEKRIKSASLLLDASLGHCFVHGLEHQNANVIYNCLRAYAAIDNTRNAEEIFCNTVVAPLMQKIIPHGPSEALAGASGDELESDYEQIKQCVEKDCKFLLDISSAENSGLHVFDFLANSILKEVLSAIQKGKPGAFSPGRPTQFLRNYKSSLDFLAYLEGYCPSRSAVAKFRAEAIYVEFMKQWNVGVYFSLRFQEIAGALDSALTAASLAPV*********SQALTLKQSVTLLDSMKSCWRQDVFLLPCSDKFLRLSLQLLSRYSNWLSSGLAARSSGHASFNPGNEWAISAAPDDFIYIIHDINCLATEVSGDYLTHVLQLLSSCSSEVLDLVKQSILEGGKSLSSMLPVVINTIVDALVEKAVEDLRQLKGITATYRMTNKPLPVRHSPYVSGVLRPLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHELAAELISVARKTESSL*********************VSDTDKICMQLFLDIQEYGRSLAALGVQAADIPPYRSLWQCVAPSDRQSLIKF
MEKRIKSASLLLDASLGHCFVHGLEHQNANVIYNCLRAYAAIDNTRNAEEIFCNTVVAPLMQKIIPHGPSEALAGASGDELESDYEQIKQCVEKDCKFLLDISSAENSGLHVFDFLANSILKEVLSAIQKGKPGAFSPGRPTQFLRNYKSSLDFLAYLEGYCPSRSAVAKFRAEAIYVEFMKQWNVGVYFSLRFQEIAGALDSALTAA***************QALTLKQSVTLLDSMKSCWRQDVFLLPCSDKFLRLSLQLLSRYSNWLSSGLAAR*************AISAAPDDFIYIIHDINCLATEVSGDYLTHVLQLLSSCSSEVLDLVKQSILEGGKSLSSMLPVVINTIVDALVEKAVEDLRQLKGITATYRMTNKPLPVRHSPYVSGVLRPLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHELAAELISVARKTESSLLKIR*G***************VSDTDKICMQLFLDIQEYGRSLAALGVQAADIPPYRSLWQCVAPSDRQS****
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MEKRIKSASLLLDASLGHCFVHGLEHQNANVIYNCLRAYAAIDNTRNAEEIFCNTVVAPLMQKIIPHGPSEALAGASGDELESDYEQIKQCVEKDCKFLLDISSAENSGLHVFDFLANSILKEVLSAIQKGKPGAFSPGRPTQFLRNYKSSLDFLAYLEGYCPSRSAVAKFRAEAIYVEFMKQWNVGVYFSLRFQEIAGALDSALTAASLAPVQNSNSNQGNSQALTLKQSVTLLDSMKSCWRQDVFLLPCSDKFLRLSLQLLSRYSNWLSSGLAARSSGHASFNPGNEWAISAAPDDFIYIIHDINCLATEVSGDYLTHVLQLLSSCSSEVLDLVKQSILEGGKSLSSMLPVVINTIVDALVEKAVEDLRQLKGITATYRMTNKPLPVRHSPYVSGVLRPLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHELAAELISVARKTESSLLKIRQGAQRRAGASSDVSDHNVSDTDKICMQLFLDIQEYGRSLAALGVQAADIPPYRSLWQCVAPSDRQSLIKF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query527 2.2.26 [Sep-21-2011]
Q921L5731 Conserved oligomeric Golg yes no 0.941 0.678 0.275 4e-52
Q14746738 Conserved oligomeric Golg yes no 0.952 0.680 0.274 1e-51
Q54UC2904 Conserved oligomeric Golg yes no 0.757 0.441 0.257 7e-40
Q9VF78710 Conserved oligomeric Golg yes no 0.867 0.643 0.28 3e-37
Q21444681 Conserved oligomeric Golg yes no 0.679 0.525 0.195 1e-08
>sp|Q921L5|COG2_MOUSE Conserved oligomeric Golgi complex subunit 2 OS=Mus musculus GN=Cog2 PE=2 SV=2 Back     alignment and function desciption
 Score =  206 bits (524), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 148/538 (27%), Positives = 260/538 (48%), Gaps = 42/538 (7%)

Query: 4   RIKSASLLLDASLGHCFVHGLEHQNANVIYNCLRAYAAIDNTRNAEEIFCNTVVAPLMQK 63
           RI   + +L  SL    + GL+  + +++ +CLR YA ID T++AE +    +V P + +
Sbjct: 199 RIAGITAMLQQSLEGLLLEGLQTSDVDIVRHCLRTYATIDKTQDAEALVGQVLVKPYVNE 258

Query: 64  IIPHGPSEALAGASGDELESDYEQIKQCVEKDCKFLLDI-----SSAENSGLHVFDFLAN 118
           +I     E    +    L+  Y ++ + V   C+ L ++     SS + + +  +DFL N
Sbjct: 259 VI----VEQFVESHPSSLQLMYNKLLEFVPHHCRLLREVTGGAVSSEKGTIVPGYDFLVN 314

Query: 119 SILKEVLSAIQKGKPGAFSPGRPTQFLRNYKSSLDFLAYLEGYCPSRSAVAKFRAEAIYV 178
           S+  E++  +++  P  F+PG P  F + Y  S+DF+   E  C S+++V + RA   Y 
Sbjct: 315 SVWPEIVRGLEEKLPSLFNPGDPDAFHQKYTVSMDFVQRFERQCGSQASVKRLRAHPAYH 374

Query: 179 EFMKQWNVGVYFSLRFQEIAGALDSALTAASLAPVQNSNSNQGNSQALTLKQSVTLLDSM 238
            F  +WN+ VYF +RF+E+AG+L++ALT          ++  G+   L       +  S+
Sbjct: 375 NFSNKWNLPVYFQIRFREVAGSLEAALTDGL------EDAPAGSPYCLLASHRTWI--SL 426

Query: 239 KSCWRQDVFLLPCSDKFLRLSLQLLSRYSNWLSSGLAARSSGHASFNPGNEWAISAAPDD 298
             CW  ++FL   + +  RL+LQ+L+R+S ++S       S  ++         S  P +
Sbjct: 427 GKCWSDEMFLPLLAHRLWRLTLQILARFSVFVSELSVRPVSNESAKETKKPLTGSKDPSE 486

Query: 299 ------------------FIYIIHDINCLATEVSGDYLTHVLQLLSSCSSEVLDLVKQSI 340
                              +Y++ D+  L  E   D L  V Q L     +    +  ++
Sbjct: 487 DQGSHASEASAASISSTQLVYVVSDLGRL-QEWLPDLLETVKQKLEMIGFKNFSSISAAL 545

Query: 341 LEGGKSLSSMLPVVINTIVDALVEKAVEDLRQLKGITATYRMTNKPLPVRHSPYVSGVLR 400
            +   +LS+ +P + + IV  L E     L+    +   YR TNK +P   S YV   L+
Sbjct: 546 EDSQSALSAHVPALSSRIVQDLSESCFSYLKSALEVPRLYRRTNKEVPSTASSYVDSALK 605

Query: 401 PLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHELAAELISVARKTESSLLKIRQGA 460
           PL  L  G      + P      L +A +  T RY E  +++++  +K E SL +++Q  
Sbjct: 606 PLYQLQSGHG--DKVQPAVMQSWLQEALSDSTHRYFETVSDVLNSVKKMEESLKRLKQA- 662

Query: 461 QRRAGASSDVSDH--NVSDTDKICMQLFLDIQEYGRSLAALGVQAADIPPYRSLWQCV 516
            RR+ A++ VS     +SD DKI +QL LD++  G  +  +G+Q +DI  + +L + V
Sbjct: 663 -RRSPATNPVSSSGGGMSDDDKIRLQLALDVEHLGEQIQRMGLQTSDIKSFPALMELV 719
Required for normal Golgi morphology and function.
Mus musculus (taxid: 10090)
>sp|Q14746|COG2_HUMAN Conserved oligomeric Golgi complex subunit 2 OS=Homo sapiens GN=COG2 PE=1 SV=1 Back     alignment and function description
>sp|Q54UC2|COG2_DICDI Conserved oligomeric Golgi complex subunit 2 OS=Dictyostelium discoideum GN=cog2 PE=3 SV=1 Back     alignment and function description
>sp|Q9VF78|COG2_DROME Conserved oligomeric Golgi complex subunit 2 OS=Drosophila melanogaster GN=ldlCp PE=2 SV=1 Back     alignment and function description
>sp|Q21444|COG2_CAEEL Conserved oligomeric Golgi complex subunit 2 OS=Caenorhabditis elegans GN=cogc-2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query527
255540279 756 Conserved oligomeric Golgi complex compo 1.0 0.697 0.779 0.0
225456291 751 PREDICTED: conserved oligomeric Golgi co 0.992 0.696 0.76 0.0
356563194 755 PREDICTED: conserved oligomeric Golgi co 1.0 0.698 0.747 0.0
356514011 755 PREDICTED: conserved oligomeric Golgi co 1.0 0.698 0.738 0.0
224136109 757 predicted protein [Populus trichocarpa] 1.0 0.696 0.727 0.0
449441234 754 PREDICTED: conserved oligomeric Golgi co 0.998 0.697 0.740 0.0
147767731 777 hypothetical protein VITISV_007347 [Viti 0.992 0.673 0.718 0.0
224121966 755 predicted protein [Populus trichocarpa] 0.996 0.695 0.737 0.0
297799512 756 hypothetical protein ARALYDRAFT_492352 [ 0.990 0.690 0.699 0.0
357477117 754 Conserved oligomeric Golgi complex subun 0.998 0.697 0.721 0.0
>gi|255540279|ref|XP_002511204.1| Conserved oligomeric Golgi complex component, putative [Ricinus communis] gi|223550319|gb|EEF51806.1| Conserved oligomeric Golgi complex component, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  865 bits (2236), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/527 (77%), Positives = 464/527 (88%)

Query: 1   MEKRIKSASLLLDASLGHCFVHGLEHQNANVIYNCLRAYAAIDNTRNAEEIFCNTVVAPL 60
           MEKRI+SASLLLDASLGHCFV GLEH++ N IYNCLRAYAAIDNT +AEEIF  T+VAPL
Sbjct: 230 MEKRIQSASLLLDASLGHCFVDGLEHRDENAIYNCLRAYAAIDNTNSAEEIFRTTIVAPL 289

Query: 61  MQKIIPHGPSEALAGASGDELESDYEQIKQCVEKDCKFLLDISSAENSGLHVFDFLANSI 120
           + KIIPHGPS  +AG SGD LE+DY QIKQC+EKDCKFLL+ISSAENSGLH FDFLANSI
Sbjct: 290 IHKIIPHGPSGTVAGVSGDGLENDYYQIKQCIEKDCKFLLEISSAENSGLHAFDFLANSI 349

Query: 121 LKEVLSAIQKGKPGAFSPGRPTQFLRNYKSSLDFLAYLEGYCPSRSAVAKFRAEAIYVEF 180
           LKEVLSAIQKGKPGAFSPGRPT+FL NYKSSLDFLA+LEGYCPSRSAVAKFR E +YVEF
Sbjct: 350 LKEVLSAIQKGKPGAFSPGRPTEFLMNYKSSLDFLAHLEGYCPSRSAVAKFRTEVVYVEF 409

Query: 181 MKQWNVGVYFSLRFQEIAGALDSALTAASLAPVQNSNSNQGNSQALTLKQSVTLLDSMKS 240
           MKQWNVGVYFSLRFQEIAGALDSAL+A SL PV+N +S Q N Q LTLKQS TLL+S+KS
Sbjct: 410 MKQWNVGVYFSLRFQEIAGALDSALSATSLVPVENLHSGQTNLQDLTLKQSATLLESLKS 469

Query: 241 CWRQDVFLLPCSDKFLRLSLQLLSRYSNWLSSGLAARSSGHASFNPGNEWAISAAPDDFI 300
           CWR+DV +L CSDKFLRLSLQLL+RYSNWLSSG+AAR  G+   N   EWAISA PDDF+
Sbjct: 470 CWREDVLILSCSDKFLRLSLQLLARYSNWLSSGIAARKMGNLGSNTVYEWAISAVPDDFV 529

Query: 301 YIIHDINCLATEVSGDYLTHVLQLLSSCSSEVLDLVKQSILEGGKSLSSMLPVVINTIVD 360
           YIIHD+ CLAT V GDYL H+LQLLS  S++VLDLVKQSIL+ GKSL+ + P+ IN I++
Sbjct: 530 YIIHDLTCLATVVCGDYLDHILQLLSPSSADVLDLVKQSILQSGKSLNDLAPLAINAIIE 589

Query: 361 ALVEKAVEDLRQLKGITATYRMTNKPLPVRHSPYVSGVLRPLKTLLEGERAMTYLTPEAK 420
            LV +AVEDLRQ+KGI+ATYRMTNKPLPVRHSPYVSGVL PLK  L+GERA+TYLT E +
Sbjct: 590 TLVNRAVEDLRQVKGISATYRMTNKPLPVRHSPYVSGVLHPLKAFLDGERAITYLTKETR 649

Query: 421 NELLLDAATQITSRYHELAAELISVARKTESSLLKIRQGAQRRAGASSDVSDHNVSDTDK 480
            ELL+ AAT++TSRY+ELAAE +SVARKTE SLL+IRQGAQRR GASSDVSD +V+++DK
Sbjct: 650 KELLVGAATELTSRYYELAAETVSVARKTEVSLLRIRQGAQRRGGASSDVSDQSVTNSDK 709

Query: 481 ICMQLFLDIQEYGRSLAALGVQAADIPPYRSLWQCVAPSDRQSLIKF 527
           ICMQLFLDIQEYGRSLAALGV+AADIP Y SLWQCVAP DRQ++I F
Sbjct: 710 ICMQLFLDIQEYGRSLAALGVEAADIPAYYSLWQCVAPPDRQNVISF 756

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225456291|ref|XP_002279916.1| PREDICTED: conserved oligomeric Golgi complex subunit 2 [Vitis vinifera] gi|297734402|emb|CBI15649.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356563194|ref|XP_003549849.1| PREDICTED: conserved oligomeric Golgi complex subunit 2-like [Glycine max] Back     alignment and taxonomy information
>gi|356514011|ref|XP_003525701.1| PREDICTED: conserved oligomeric Golgi complex subunit 2-like [Glycine max] Back     alignment and taxonomy information
>gi|224136109|ref|XP_002322242.1| predicted protein [Populus trichocarpa] gi|222869238|gb|EEF06369.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449441234|ref|XP_004138387.1| PREDICTED: conserved oligomeric Golgi complex subunit 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|147767731|emb|CAN71854.1| hypothetical protein VITISV_007347 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224121966|ref|XP_002318717.1| predicted protein [Populus trichocarpa] gi|222859390|gb|EEE96937.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297799512|ref|XP_002867640.1| hypothetical protein ARALYDRAFT_492352 [Arabidopsis lyrata subsp. lyrata] gi|297313476|gb|EFH43899.1| hypothetical protein ARALYDRAFT_492352 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|357477117|ref|XP_003608844.1| Conserved oligomeric Golgi complex subunit [Medicago truncatula] gi|355509899|gb|AES91041.1| Conserved oligomeric Golgi complex subunit [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query527
TAIR|locus:2126808756 AT4G24840 "AT4G24840" [Arabido 0.990 0.690 0.638 4e-177
ZFIN|ZDB-GENE-040426-2671730 cog2 "component of oligomeric 0.939 0.678 0.271 5.8e-49
MGI|MGI:1923582731 Cog2 "component of oligomeric 0.954 0.688 0.256 5.3e-45
UNIPROTKB|E1C7Y1739 COG2 "Uncharacterized protein" 0.360 0.257 0.321 7.3e-44
UNIPROTKB|F1P8W5678 COG2 "Uncharacterized protein" 0.958 0.744 0.252 3.5e-37
UNIPROTKB|F5H1E5622 COG2 "Conserved oligomeric Gol 0.960 0.813 0.249 1.2e-36
UNIPROTKB|B7Z2Y2679 COG2 "cDNA FLJ55945, highly si 0.960 0.745 0.249 2.1e-36
UNIPROTKB|Q14746738 COG2 "Conserved oligomeric Gol 0.960 0.685 0.249 2.9e-36
UNIPROTKB|F1RG46664 COG2 "Uncharacterized protein" 0.960 0.762 0.254 3.9e-36
UNIPROTKB|F1MQ89739 COG2 "Uncharacterized protein" 0.956 0.682 0.25 6.2e-36
TAIR|locus:2126808 AT4G24840 "AT4G24840" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1720 (610.5 bits), Expect = 4.0e-177, P = 4.0e-177
 Identities = 335/525 (63%), Positives = 408/525 (77%)

Query:     1 MEKRIKSASLLLDASLGHCFVHGLEHQNANVIYNCLRAYAAIDNTRNAEEIFCNTVVAPL 60
             MEKRI+SAS+LLDASLGHCF+ GL + + +V+YNCLRAYAAIDNT  AEEIF  T+VAP 
Sbjct:   233 MEKRIQSASVLLDASLGHCFIDGLNNSDTSVLYNCLRAYAAIDNTNAAEEIFRTTIVAPF 292

Query:    61 MQKIIPHGPSEALAGASGDELESDYEQIKQCVEKDCKFLLDISSAENSGLHVFDFLANSI 120
             +QKII H  +   AG S DELE+DY+QIK  + KDCK LL+ISS + SGLHVFDFLANSI
Sbjct:   293 IQKIITHETTTNAAGTSEDELENDYKQIKHFIAKDCKMLLEISSTDKSGLHVFDFLANSI 352

Query:   121 LKEVLSAIQKGKPGAFSPGRPTQFLRNYKSSLDFLAYLEGYCPSRSAVAKFRAEAIYVEF 180
             LKEVL AIQK KPGAFSPGRPT+FL+NYK+SLDFLAYLEGYCPSRSAV KFRAEAI VEF
Sbjct:   353 LKEVLWAIQKVKPGAFSPGRPTEFLKNYKASLDFLAYLEGYCPSRSAVTKFRAEAICVEF 412

Query:   181 MKQWNVGVYFSLRFQEIXXXXXXXXXXXXXXPVXXXXXXXXXXXALTLKQSVTLLDSMKS 240
             MKQWNVGVYFSLRFQEI               V            L L+QS TLL+ ++S
Sbjct:   413 MKQWNVGVYFSLRFQEIAGALDSALTSPSL--VFIQDSDKESSLNLILRQSDTLLECLRS 470

Query:   241 CWRQDVFLLPCSDKFXXXXXXXXXXYSNWLSSGLAARSSGHASFNPGNEWAISAAPDDFI 300
             CW++DV +   +DKF          YS W+SS L  R S +AS +PG EWA+SA  +DF+
Sbjct:   471 CWKEDVLVFSAADKFLRLTLQLLSRYSFWVSSALNNRKS-NASPSPGCEWAVSATAEDFV 529

Query:   301 YIIHDINCLATEVSGDYLTHVLQLLSSCSSEVLDLVKQSILEGGKSLSSMLPVVINTIVD 360
             Y+IHD+NCL +EV GDYL H+ Q LSS S+EVLD+V+ SI +GG SL  +LP++  TI+D
Sbjct:   530 YVIHDVNCLVSEVCGDYLGHISQYLSSSSTEVLDVVRISIEQGGVSLEKVLPLLTKTIID 589

Query:   361 ALVEKAVEDLRQLKGITATYRMTNKPLPVRHSPYVSGVLRPLKTLLEGERAMTYLTPEAK 420
              +V+K+VEDLRQL+GITAT+RMTNKPLPVRHSPYV G+LRP+K  LEG++A  YLT + K
Sbjct:   590 VIVDKSVEDLRQLRGITATFRMTNKPLPVRHSPYVVGLLRPVKAFLEGDKARNYLTQKTK 649

Query:   421 NELLLDAATQITSRYHELAAELISVARKTESSLLKIRQGAQRRAGASSDVSDHNVSDTDK 480
              ELL  + ++IT RY+ELAA+++SVARKT+SSL K+RQ AQRR GA+S VSD NVS+TDK
Sbjct:   650 EELLHGSVSEITRRYYELAADVVSVARKTQSSLQKLRQNAQRRGGAASGVSDQNVSETDK 709

Query:   481 ICMQLFLDIQEYGRSLAALGVQAADIPPYRSLWQCVAPSDRQSLI 525
             +CMQLFLDIQEYGR+++ALG++ ADIP Y S WQCVAP+DRQ+ I
Sbjct:   710 MCMQLFLDIQEYGRNVSALGLKPADIPEYCSFWQCVAPADRQNSI 754
GO:0003674 "molecular_function" evidence=ND
GO:0005794 "Golgi apparatus" evidence=ISM
GO:0007030 "Golgi organization" evidence=IEA
GO:0015031 "protein transport" evidence=IEA
GO:0016020 "membrane" evidence=IEA
GO:0005773 "vacuole" evidence=IDA
GO:0005829 "cytosol" evidence=RCA
ZFIN|ZDB-GENE-040426-2671 cog2 "component of oligomeric golgi complex 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:1923582 Cog2 "component of oligomeric golgi complex 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E1C7Y1 COG2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1P8W5 COG2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F5H1E5 COG2 "Conserved oligomeric Golgi complex subunit 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|B7Z2Y2 COG2 "cDNA FLJ55945, highly similar to Conserved oligomeric Golgi complex component 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q14746 COG2 "Conserved oligomeric Golgi complex subunit 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1RG46 COG2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1MQ89 COG2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query527
pfam12022120 pfam12022, DUF3510, Domain of unknown function (DU 2e-35
>gnl|CDD|221383 pfam12022, DUF3510, Domain of unknown function (DUF3510) Back     alignment and domain information 
 Score =  128 bits (324), Expect = 2e-35
 Identities = 50/131 (38%), Positives = 78/131 (59%), Gaps = 11/131 (8%)

Query: 359 VDALVEKAVEDLRQLKGITATYRMTNKPLPVRHSPYVSGVLRPLKTLLEGERAMTYLTPE 418
           ++ LVE+ VE L+QL  I   YRMTNKP+P   S YV  +L+PL +  E E     ++PE
Sbjct: 1   INKLVERCVEFLKQLSSIPRLYRMTNKPVPTTPSSYVDSILKPLHSFKEFET----ISPE 56

Query: 419 AKNELLLDAATQITSRYHELAAELISVARKTESSLLKIRQGAQRRAGASSDVSDHNVSDT 478
              E+L    + +T RY E A+E++   +KTE SL ++++   + +G+        +SD 
Sbjct: 57  IIEEILTKVVSTVTERYKEKASEVLDSVKKTEESLRRLKRKRTKESGSI-------MSDD 109

Query: 479 DKICMQLFLDI 489
           DKI +QL+LD+
Sbjct: 110 DKIRLQLYLDV 120

This presumed domain is functionally uncharacterized. This domain is found in eukaryotes. This domain is about 130 amino acids in length. This domain is found associated with pfam06148. Length = 120

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 527
KOG2307705 consensus Low density lipoprotein receptor [Intrac 100.0
PF12022125 DUF3510: Domain of unknown function (DUF3510); Int 100.0
PF10191766 COG7: Golgi complex component 7 (COG7); InterPro: 98.69
PF10474234 DUF2451: Protein of unknown function C-terminus (D 97.56
PF04091311 Sec15: Exocyst complex subunit Sec15-like ; InterP 96.18
PF07393710 Sec10: Exocyst complex component Sec10; InterPro: 94.84
KOG2033 863 consensus Low density lipoprotein B-like protein [ 90.33
PF06248593 Zw10: Centromere/kinetochore Zw10; InterPro: IPR00 89.99
PF14923450 CCDC142: Coiled-coil protein 142 87.58
>KOG2307 consensus Low density lipoprotein receptor [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=8.3e-128  Score=994.95  Aligned_cols=507  Identities=37%  Similarity=0.592  Sum_probs=464.4

Q ss_pred             ChhHHHHHHHHHHHHHhHHHHhhhccCCHHHHHHHHHHHHHhcChhhHHHHHHHHhhHHHHhhhcCCCCCccccCCCcch
Q 009717            1 MEKRIKSASLLLDASLGHCFVHGLEHQNANVIYNCLRAYAAIDNTRNAEEIFCNTVVAPLMQKIIPHGPSEALAGASGDE   80 (527)
Q Consensus         1 ~~~ri~~~~~~L~~~L~~~f~~~l~~~~~~~L~~cLr~Y~~ld~~~~aE~~~r~~vV~P~~~~ii~~~~~~~~~~~~~~~   80 (527)
                      +++||++++.+|+++|+++|.+||+ .+...|.+|||+|++||+++.||++||..||+||+.++|+++..    .++|+|
T Consensus       193 ~e~ria~~~~~L~qsl~~lf~eglq-sa~~~l~nclriYatld~t~~ae~lfr~~vvapyi~evI~eq~~----e~sp~g  267 (705)
T KOG2307|consen  193 SEERIAAEKIILSQSLAVLFAEGLQ-SAAGDLQNCLRIYATLDLTESAESLFRLLVVAPYIAEVINEQHD----ETSPSG  267 (705)
T ss_pred             hhhHHhhHHHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhc----cCCchh
Confidence            5899999999999999999999995 59999999999999999999999999999999999999999877    789999


Q ss_pred             HHHHHHHHHHHHH-HhhHHHHHHhhhccCCCcccccchhccHHHHHHHHHhcCCccccCCCchHHHHHHHHHHHHHHHHH
Q 009717           81 LESDYEQIKQCVE-KDCKFLLDISSAENSGLHVFDFLANSILKEVLSAIQKGKPGAFSPGRPTQFLRNYKSSLDFLAYLE  159 (527)
Q Consensus        81 L~~~y~~il~fi~-~~~~~lleit~~~~~~~~~~dfl~nsvw~ev~~~l~~~l~~iFapG~Pd~F~~nY~~t~~Fl~~lE  159 (527)
                      |.++|++|++||. ++|+.+++++.....|++|||||+||+|++|+.+|+++||++|+||||++||+||++|++||++||
T Consensus       268 l~~~ykqilefv~~h~c~llre~tssdk~g~~~fdFlvnS~l~~ilt~iek~mps~f~Pgnp~~F~ekyk~t~DFl~~le  347 (705)
T KOG2307|consen  268 LLKLYKQILEFVKKHRCTLLREMTSSDKRGLPGFDFLVNSLLTFILTFIEKCMPSVFVPGNPRLFHEKYKLTQDFLDNLE  347 (705)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhchhhcCCCchHHHHHHHHHHHHHHHHHHhcccccCCCCcHHHHHHHHHHHHHHHhcc
Confidence            9999999999999 999999999977777899999999999999999999999999999999999999999999999999


Q ss_pred             h--hCCCHHHHHHHhhchhHHHHHHhhcchhhHHHHHHHHHHhHHHhhhhcccccccCCCCCCCCCcccchhhHHHHHHH
Q 009717          160 G--YCPSRSAVAKFRAEAIYVEFMKQWNVGVYFSLRFQEIAGALDSALTAASLAPVQNSNSNQGNSQALTLKQSVTLLDS  237 (527)
Q Consensus       160 ~--~~~S~~~v~~lR~~~~y~~f~~rWnLpVYFqlRfqEIa~~lE~~L~~~~~~~~~~~~~~~~~~~~f~l~~s~~l~~~  237 (527)
                      +  .|+|+.+|.+||+||.|++||+|||||||||||||||||++|++|+ ++.......+++.++..+|++.+|.++|+|
T Consensus       348 ~~~tC~s~~avt~~Rah~~~~sF~kkwNl~VYFqlrfqeiag~ldaaLt-p~~~~d~l~d~~~Est~~l~l~as~a~~ea  426 (705)
T KOG2307|consen  348 SSHTCRSMLAVTKFRAHAICVSFMKKWNLPVYFQLRFQEIAGQLDAALT-PEMFADPLTDENRESTPQLHLGASRAIIEA  426 (705)
T ss_pred             ccCcCchHHHHHHHHhhhHHHHHHHhcCcceeEeeeHHHHHHHHHHhcC-chhhcccccccccccCccchhhHhHHHHHH
Confidence            9  8999999999999999999999999999999999999999999998 554433333444455568999999999999


Q ss_pred             HhhhcccCccccccchHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCcccccCChhHHHHHHHHHHHHHHHhhhhH
Q 009717          238 MKSCWRQDVFLLPCSDKFLRLSLQLLSRYSNWLSSGLAARSSGHASFNPGNEWAISAAPDDFIYIIHDINCLATEVSGDY  317 (527)
Q Consensus       238 l~~cWs~~Vfl~~L~~rFwkLtLQllsRy~~wi~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~l~~Di~~L~~~i~~~~  317 (527)
                      |++||+||||+|++.|||||||||+++||+.|++. +.+..    +++.+ .|   .+.++++++++|...+.+.+.+.+
T Consensus       427 lrrcWsddvylp~~vdKl~rltlQlllRysrwisa-itns~----gs~~s-kp---~trtqlvyv~hdd~~llqevl~el  497 (705)
T KOG2307|consen  427 LRRCWSDDVYLPPIVDKLWRLTLQLLLRYSRWISA-ITNSF----GSEKS-KP---ATRTQLVYVRHDDGNLLQEVLPEL  497 (705)
T ss_pred             HHHHccccccchhhHHHHHHHHHHHHHHHhHHHHH-HHhcc----CCCCC-CC---cchhheeeeecccchHHHHHhHHH
Confidence            99999999999999999999999999999999984 44321    22211 33   456789999977666666666669


Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHhhchhhhcchhHHHHHHHHHHHHHHHHHhhhhccchhhhhccCCCCCCCCCcchHh
Q 009717          318 LTHVLQLLSSCSSEVLDLVKQSILEGGKSLSSMLPVVINTIVDALVEKAVEDLRQLKGITATYRMTNKPLPVRHSPYVSG  397 (527)
Q Consensus       318 ~~~I~~~l~~~~~~~~~~~~~~l~e~~~~L~~~~~~l~~~iv~~l~~~c~~~Lk~v~~Ip~~YR~Tnk~~Pt~~S~YV~~  397 (527)
                      +++|+++++..+..+.+.+.++|+.++.+|.+++|.+.+.||+.+++.|...|+||++||++|||||||+||+||+||.+
T Consensus       498 le~I~~kl~~~~k~~sdv~a~sle~~g~Sl~a~lp~i~ktIIe~lsd~~~~~lrqv~dvprlyR~TnKevPtthSsYVv~  577 (705)
T KOG2307|consen  498 LESIWGKLHDITKVFSDVFAQSLEKHGRSLDALLPQIDKTIIEMLSDVCHQELRQVSDVPRLYRWTNKEVPTTHSSYVVT  577 (705)
T ss_pred             HHHHHhhccchhhhhHHHHHHHHHHhcccHHHHhhhHHHHHHHHHHHHHHHHHHHHhccHHHHHhccCCCCCcchHHHHH
Confidence            99999999988876777778899999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHhHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccccCCCCCCCCCCCCCc
Q 009717          398 VLRPLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHELAAELISVARKTESSLLKIRQGAQRRAGASSDVSDHNVSD  477 (527)
Q Consensus       398 il~PL~~F~~~~~~~~~l~~e~~~~~~~~v~~~vt~~Y~~~~~evL~sv~KtEeSL~RLKk~~~~~~g~~~~~~~~~~sD  477 (527)
                      +|+|+++|.++...  .|.+.+.+||+.+|..++|.+|++.++|||+||+|||+||+|||+.+++++|+ ++.++++|||
T Consensus       578 aLrpvkal~eg~k~--~L~q~~~eeil~gv~seit~~yye~vsDVl~sv~ktesSL~Rlkq~~~~~~g~-s~gss~~vSd  654 (705)
T KOG2307|consen  578 ALRPVKALKEGLKC--ELEQPHTEEILRGVNSEITNYYYEKVSDVLDSVEKTESSLSRLKQKTTTDSGS-SGGSSQTVSD  654 (705)
T ss_pred             HHHHHHHHHHhhhh--hhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC-CCCCCCCcCc
Confidence            99999999999977  78999999999999999999999999999999999999999999999876555 5566688999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHhcccccccccc
Q 009717          478 TDKICMQLFLDIQEYGRSLAALGVQAADIPPYRSLWQCVAPSDRQSLI  525 (527)
Q Consensus       478 ~dKIr~QL~LDv~~f~~~~~~lgv~~~~i~~~~~L~~~V~~~~~~~~~  525 (527)
                      |||||+||++||++|+.++++||+++++|.+|++|.+++....++..+
T Consensus       655 dDKir~QL~lDv~~~~s~~~kL~fqa~di~~~~~lvel~~~~~dsa~~  702 (705)
T KOG2307|consen  655 DDKIRQQLYLDVKYFLSYAEKLVFQAADITGLQELVELFDKDADSAIV  702 (705)
T ss_pred             chHHHHHHHHHHHHHHHHHHHhcchHhhhhhHHHHHHHHHhhhhhhhh
Confidence            999999999999999999999999999999999999999888776554

>PF12022 DUF3510: Domain of unknown function (DUF3510); InterPro: IPR024603 The COG complex comprises eight proteins (COG1-8) and plays critical roles in Golgi structure and function [] Back     alignment and domain information
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis [] Back     alignment and domain information
>PF10474 DUF2451: Protein of unknown function C-terminus (DUF2451); InterPro: IPR019514 This protein is found in eukaryotes but its function is not known Back     alignment and domain information
>PF04091 Sec15: Exocyst complex subunit Sec15-like ; InterPro: IPR007225 Sec15 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane Back     alignment and domain information
>PF07393 Sec10: Exocyst complex component Sec10; InterPro: IPR009976 This family contains the Sec10 component (approximately 650 residues long) of the eukaryotic exocyst complex, which specifically affects the synthesis and delivery of secretory and basolateral plasma membrane proteins [] Back     alignment and domain information
>KOG2033 consensus Low density lipoprotein B-like protein [Lipid transport and metabolism] Back     alignment and domain information
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells Back     alignment and domain information
>PF14923 CCDC142: Coiled-coil protein 142 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query527
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-09
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 59.5 bits (143), Expect = 2e-09
 Identities = 90/579 (15%), Positives = 172/579 (29%), Gaps = 159/579 (27%)

Query: 12  LDASLGHCFVHGLEHQNANVIYNCLRAYAAIDNTRNAEE----IFCNTVVAPLMQK---- 63
           +D   G       ++Q  +++     A+    + ++ ++    I     +  ++      
Sbjct: 7   MDFETGE-----HQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAV 61

Query: 64  --------IIPHGPSEALAGASGDELESDYEQIKQCVEKDCKFLLDISSAENSGLHVFDF 115
                    +     E +     + L  +Y+ +   ++ + +     S      +   D 
Sbjct: 62  SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR---QPSMMTRMYIEQRDR 118

Query: 116 LANSI----------------LKEVLSAIQK-------GKPGAFSPGRPT---QFLRNYK 149
           L N                  L++ L  ++        G  G+   G+         +YK
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS---GKTWVALDVCLSYK 175

Query: 150 --SSLDF-LAYLE-GYCPSRSAVAKFRAEAIYVEFMKQWNVGVYFS----LRFQEIAGAL 201
               +DF + +L    C S   V +   + +  +    W      S    LR   I   L
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLE-MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234

Query: 202 DSALTAAS-------LAPVQNSNSNQ---GNSQAL--TLKQSVTLLDSMKSCWRQDVFLL 249
              L +         L  VQN+ +      + + L  T  + VT  D + +     + L 
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVT--DFLSAATTTHISLD 292

Query: 250 PCSDKF-LRLSLQLLSRYSNWLSSGLAARSSGHASFNPGNEWAIS--AA--------PDD 298
             S          LL +Y +     L          NP     +S  A          D+
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT---NP---RRLSIIAESIRDGLATWDN 346

Query: 299 FIYIIHD---------INCL-ATEVSGDYL------------THVLQLL-----SSCSSE 331
           + ++  D         +N L   E    +             T +L L+      S    
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMV 406

Query: 332 VLD-LVKQSILEGGKSLSSMLPVVINTIVDALVEKAVEDLRQL-KGITATYRMT-----N 384
           V++ L K S++E     S+   + I +I   L  K +E+   L + I   Y +      +
Sbjct: 407 VVNKLHKYSLVEKQPKEST---ISIPSIYLELKVK-LENEYALHRSIVDHYNIPKTFDSD 462

Query: 385 KPLPVRHSPYV-SGVLRPLKTLLEGERA----MTYL-----------------TPEAKNE 422
             +P     Y  S +   LK +   ER     M +L                    +   
Sbjct: 463 DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILN 522

Query: 423 LLLDAAT---QIT---SRYHELAAELISVARKTESSLLK 455
            L         I     +Y  L   ++    K E +L+ 
Sbjct: 523 TLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLIC 561

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query527
2a2f_X325 Exocyst complex component SEC15; all helical struc 96.92
3n1e_A141 Vacuolar protein sorting-associated protein 54; sp 94.64
3swh_A341 MUNC13-1, protein UNC-13 homolog A; alpha helical, 86.36
2fji_1399 Exocyst complex component SEC6; exocytosis, tandem 80.88
>2a2f_X Exocyst complex component SEC15; all helical structure, protein transport; 2.50A {Drosophila melanogaster} Back     alignment and structure
Probab=96.92  E-value=0.34  Score=49.09  Aligned_cols=107  Identities=15%  Similarity=0.162  Sum_probs=74.8

Q ss_pred             hhhhccCCCCCCCCCcchHhhhHhHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 009717          378 ATYRMTNKPLPVRHSPYVSGVLRPLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHELAAELISVARKTESSLLKIR  457 (527)
Q Consensus       378 ~~YR~Tnk~~Pt~~S~YV~~il~PL~~F~~~~~~~~~l~~e~~~~~~~~v~~~vt~~Y~~~~~evL~sv~KtEeSL~RLK  457 (527)
                      .-|=|+-.++|++||.|+..++.=|+.-... -.  .||.++++.+..+++++++++..+.    |     +++..||+ 
T Consensus       204 a~yDW~~~~~~~~ps~yi~dli~fL~~~f~s-l~--~LP~~v~~~~~~~a~~his~~l~~~----L-----l~~~vk~i-  270 (325)
T 2a2f_X          204 SAYDWLLVEPPGIASAFITDMISYLKSTFDS-FA--FKLPHIAQAACRRTFEHIAEKIYSI----M-----YDEDVKQI-  270 (325)
T ss_dssp             CCTTCC----CCSCCHHHHHHHHHHHHHHHT-TT--TTSHHHHHHHHHHHHHHHHHHHHHH----H-----TC-------
T ss_pred             cccCCCCCCCCCCccHHHHHHHHHHHHHHHH-HH--cCCHHHHHHHHHHHHHHHHHHHHHH----h-----cCcchhhc-
Confidence            4577998899999999999999999988773 33  7999999999999999999999884    3     23444443 


Q ss_pred             hcccccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcCCCC----CCCccHHHHHHhcc
Q 009717          458 QGAQRRAGASSDVSDHNVSDTDKICMQLFLDIQEYGRSLAALGVQA----ADIPPYRSLWQCVA  517 (527)
Q Consensus       458 k~~~~~~g~~~~~~~~~~sD~dKIr~QL~LDv~~f~~~~~~lgv~~----~~i~~~~~L~~~V~  517 (527)
                        ..   +        |       =.|+-+||.++..-+.+.+++.    .=-..|.+|.++|.
T Consensus       271 --n~---~--------a-------v~~~~~Dv~~lE~fa~~~~v~~l~~~~L~~~F~eLrQli~  314 (325)
T 2a2f_X          271 --ST---G--------A-------LTQINLDLMQCEFFAASEPVPGLKEGELSKYFLRNRQLLD  314 (325)
T ss_dssp             --CC---T--------T-------HHHHHHHHHHHHHHHTTCSSSSCCSSTTGGGGHHHHHHHH
T ss_pred             --CH---H--------H-------HHHHHHHHHHHHHHHHhCCCCCcccchHHHHHHHHHHHHH
Confidence              11   1        1       2589999999999998866542    12267788877763
>3n1e_A Vacuolar protein sorting-associated protein 54; spinal muscular atrophy, vesicle trafficking, golgi apparatu tethering complex, GARP.; 1.70A {Mus musculus} PDB: 3n1b_A Back     alignment and structure
>3swh_A MUNC13-1, protein UNC-13 homolog A; alpha helical, neurotransmitter release, snare motif, exocyt; 2.65A {Rattus norvegicus} Back     alignment and structure
>2fji_1 Exocyst complex component SEC6; exocytosis, tandem helical bundles, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00