Citrus Sinensis ID: 009767

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520------
MYALLCSDLNEKLPPFPSDEPGGKDITFKRILLNHCQEAFEGADNTRAEIRQMTAPEQEMERMDQERLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLENDGKTCPAEENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKELTTNSQLVPRLRFMIHDVLDLRANNWVPRREEMKAKTITEIHSEAEKNLGLRPGATAMMRNGRTGATGGMGPGGFPIARPGTGGMMPGMPGTQKMPGMPGFDTDNWEVPRSRTMPRGDSKSPSQFPGRVQSPLIGKSPSINSKFLPQGSGGIISGKTSALLQGSPTPSARPSGIASGVEPLTQYTKPVAPAASVVASPEKPSAPVTKLNLADLRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKIPPCVEPVIQLLEFLLNKNVLTTRDIGTGCLLYGSLLDDIGIDLPKAPNNFGEMVGKLVVAKSLDFIVLKEVLKKVEDNMFRRSIFTAAMKSIQSSPAGQEVLAVQGAEVQACESLLT
cHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHcccccHHHHHHcccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHcccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcHHHHHcccccHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcc
cHHHHHHHHHHHcccccccccccccEEHHHHHHHHHHHHHHccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHcccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcc
MYALLCSdlneklppfpsdepggkditfKRILLNHCQEAFEGADNTRAEIRQmtapeqemERMDQERLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLendgktcpaeeNVEAICQFFNTIgkqldenpksrrvnDVYFSRLKelttnsqlvprlRFMIHDVldlrannwvprreEMKAKTITEIHSEAEknlglrpgatammrngrtgatggmgpggfpiarpgtggmmpgmpgtqkmpgmpgfdtdnwevprsrtmprgdskspsqfpgrvqspligkspsinskflpqgsggiisgktsallqgsptpsarpsgiasgvepltqytkpvapaasvvaspekpsapvtklNLADLRKKTVSLLEEYFSIRILDEALQCVEelraptyhpEVVKEAIALALekippcvePVIQLLEFLLNknvlttrdigTGCLLYGSLlddigidlpkapnnfgEMVGKLVVAKSLDFIVLKEVLKKVEDNMFRRSIFTAAMKsiqsspagQEVLAVQGAEVQACESLLT
MYALLCSDlneklppfpsdepggKDITFKRILLNHCQEAfegadntraEIRQMtapeqemermDQERLVKLRTLGNIRLIGellkqkmvpEKIVHHIVQELLENDGKTCPAEENVEAICQFFNTigkqldenpksrrVNDVYFSRLkelttnsqlvprlrFMIHDvldlrannwvprreEMKAKTITEihseaeknlglrpgATAMMRNGRtgatggmgpgGFPIARPGTGGMMPGMPGTQKMPGMPGFDTDNWEVPRSRtmprgdskspsqfpGRVQSPLIGKSPSINSKFLPQGSGGIISGKTSALLQGSPTPSARPSGIASGVEPLTQYTKPVAPAAsvvaspekpsapvtklnladLRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKIPPCVEPVIQLLEFLLNKNVLTTRDIGTGCLLYGSLLDDIGIDLPKAPNNFGEMVGKLVVAKSLDFIVLKEVLKKVEDNMFRRSIFTAAMKSIQSSPAGQEVLAVQGAEVQACESLLT
MYALLCSDLNEKLPPFPSDEPGGKDITFKRILLNHCQEAFEGADNTRAEIRQMTAPEQEMERMDQERLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLENDGKTCPAEENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKELTTNSQLVPRLRFMIHDVLDLRANNWVPRREEMKAKTITEIHSEAEKNLGLRPGATAmmrngrtgatggmgpggFPIARpgtggmmpgmpgtqkmpgmpgFDTDNWEVPRSRTMPRGDSKSPSQFPGRVQSPLIGKSPSINSKFLPQGSGGIISGKTSALLQGSPTPSARPSGIASGVEPLTQYTkpvapaasvvaspekpsapvTKLNLADLRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKIPPCVEPVIQLLEFLLNKNVLTTRDIGTGCLLYGSLLDDIGIDLPKAPNNFGEMVGKLVVAKSLDFIVLKEVLKKVEDNMFRRSIFTAAMKSIQSSPAGQEVLAVQGAEVQACESLLT
*************************ITFKRILLNHCQEAF***************************LVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLENDGKTCPAEENVEAICQFFNTIGKQLD*****RRVNDVYFSRLKELTTNSQLVPRLRFMIHDVLDLRANNWVPR**********************************************************************************************************************************************************************************LNLADLRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKIPPCVEPVIQLLEFLLNKNVLTTRDIGTGCLLYGSLLDDIGIDLPKAPNNFGEMVGKLVVAKSLDFIVLKEVLKKVEDNMFRRSIFTAAM****************************
MYALLCSDLN*****************FKRILLNHCQEAFEGAD***********************LVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLENDGKTCPAEENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKELTT**QLVPRLRFMIHDVLDLRANNWVP**************************************************************************************************************************************************************************************ADLRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKIPPCVEPVIQLLEFLLNKNVLTTRDIGTGCLLYGSLLDDIGIDLPKAPNNFGEMVGKLVVAKSLDFIVLKEVLKKVEDNMFRRSIFTAAMK*************VQGAEVQACESLLT
MYALLCSDLNEKLPPFPSDEPGGKDITFKRILLNHCQEAFEGADNTRAEIRQMTAPEQEMERMDQERLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLENDGKTCPAEENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKELTTNSQLVPRLRFMIHDVLDLRANNWVPRREEMKAKTITEIHSEAEKNLGLRPGATAMMRNGRTGATGGMGPGGFPIARPGTGGMMPGMPGTQKMPGMPGFDTDNWEVPRS*****************VQSPLIGKSPSINSKFLPQGSGGIISGKTSAL************GIASGVEPLTQYTKPVA**************PVTKLNLADLRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKIPPCVEPVIQLLEFLLNKNVLTTRDIGTGCLLYGSLLDDIGIDLPKAPNNFGEMVGKLVVAKSLDFIVLKEVLKKVEDNMFRRSIFTAAMKSIQSSPAGQEVLAVQGAEVQACESLLT
MYALLCSDLNEKLPPFPSDEPGGKDITFKRILLNHCQEAFEGADNTRAEIRQM***EQEMERMDQERLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLENDGKTCPAEENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKELTTNSQLVPRLRFMIHDVLDLRANNWVPRREEMKAKTITEIHSEAEKN***************************************************************************************************************************************************************LNLADLRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKIPPCVEPVIQLLEFLLNKNVLTTRDIGTGCLLYGSLLDDIGIDLPKAPNNFGEMVGKLVVAKSLDFIVLKEVLKKVEDNMFRRSIFTAAMKSIQSSPAGQEVLAVQGAEVQACESLLT
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MYALLCSDLNEKLPPFPSDEPGGKDITFKRILLNHCQEAFEGADNTRAEIRQMTAPEQEMERMDQERLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLENDGKTCPAEENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKELTTNSQLVPRLRFMIHDVLDLRANNWVPRREEMKAKTITEIHSEAEKNLGLRPGATAMMRNGRTGATGGMGPGGFPIARPGTGGMMPGMPGTQKMPGMPGFDTDNWEVPRSRTMPRGDSKSPSQFPGRVQSPLIGKSPSINSKFLPQGSGGIISGKTSALLQGSPTPSARPSGIASGVEPLTQYTKPVAPAASVVASPEKPSAPVTKLNLADLRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKIPPCVEPVIQLLEFLLNKNVLTTRDIGTGCLLYGSLLDDIGIDLPKAPNNFGEMVGKLVVAKSLDFIVLKEVLKKVEDNMFRRSIFTAAMKSIQSSPAGQEVLAVQGAEVQACESLLT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query526 2.2.26 [Sep-21-2011]
Q03387788 Eukaryotic translation in N/A no 0.975 0.651 0.619 0.0
Q41583787 Eukaryotic translation in N/A no 0.975 0.651 0.617 0.0
Q84PB3793 Eukaryotic translation in yes no 0.977 0.648 0.622 0.0
Q93ZT6780 Eukaryotic translation in yes no 0.971 0.655 0.615 0.0
Q6K641780 Eukaryotic translation in no no 0.979 0.660 0.612 1e-179
O82233747 Eukaryotic translation in no no 0.963 0.678 0.596 1e-176
B9FXV51792 Eukaryotic translation in no no 0.865 0.253 0.328 7e-43
G5CEW61488 Eukaryotic translation in N/A no 0.414 0.146 0.385 4e-34
Q76E231727 Eukaryotic translation in no no 0.427 0.130 0.386 9e-30
Q04637 1599 Eukaryotic translation in no no 0.385 0.126 0.372 5e-29
>sp|Q03387|IF4G1_WHEAT Eukaryotic translation initiation factor isoform 4G-1 OS=Triticum aestivum PE=1 SV=2 Back     alignment and function desciption
 Score =  662 bits (1709), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/534 (61%), Positives = 403/534 (75%), Gaps = 21/534 (3%)

Query: 1   MYALLCSDLNEKLPPFPSDEPGGKDITFKRILLNHCQEAFEGADNTRAEIRQMTAPEQEM 60
           MYA LCS+LN+ LP FPS+EPGGK+ITFKR+LLN+CQEAFEGAD+ R EI  +T P+QEM
Sbjct: 264 MYAQLCSELNDNLPTFPSEEPGGKEITFKRVLLNNCQEAFEGADSLRVEIASLTGPDQEM 323

Query: 61  ERMDQERLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLENDGKTCPAEENVEAICQ 120
           E+ D+ER+ KLRTLGNIRLIGELLKQKMVPEKIVHHIV+ELL +D K CP EE+VEAICQ
Sbjct: 324 EKRDKERIFKLRTLGNIRLIGELLKQKMVPEKIVHHIVKELLGSDKKACPDEEHVEAICQ 383

Query: 121 FFNTIGKQLDENPKSRRVNDVYFSRLKELTTNSQLVPRLRFMIHDVLDLRANNWVPRREE 180
           FFNTIGKQLDENPKSRR+ND YF +++EL  N QL PR +FM+ D++DLR+NNWVPRR E
Sbjct: 384 FFNTIGKQLDENPKSRRINDTYFVQIRELVANPQLTPRSKFMVRDLIDLRSNNWVPRRAE 443

Query: 181 MKAKTITEIHSEAEKNLGLRPGATAMMRNGRTGATGGMGPGGFPIARPGTGGMMPGMPGT 240
           +KAKTI+EIH+EAEKNLGLRPGATA MRNGR    G + PGGF + RPGTGGMMPGMPG+
Sbjct: 444 IKAKTISEIHTEAEKNLGLRPGATANMRNGRNAPGGPLSPGGFSVNRPGTGGMMPGMPGS 503

Query: 241 QKMPGMPGFDTDNWEVPRSRTMPRGDSKSPSQFPGRVQSPLIGKSPSINS------KFLP 294
           +KMPGMPG D DNWEV RSR+MPRGD       P R Q PLI K PSIN       + LP
Sbjct: 504 RKMPGMPGLDNDNWEVQRSRSMPRGD-------PLRNQGPLINKVPSINKPSPINPRLLP 556

Query: 295 QGSGGIISGKTSALLQGSPTPSARPSGIASGVEPLTQYT----KPVAPAASVVASPEKPS 350
           QG+G +I GK SALL G+  P +RPS + +   PL   T    KP +   + V  P+K +
Sbjct: 557 QGTGALI-GK-SALL-GTGGPPSRPSSLTASPTPLPAQTTASPKPSSATPASVPIPDK-A 612

Query: 351 APVTKLNLADLRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKIP 410
           A   K+  A L+KKT SLLEEYF IRILDEA QC+EEL++P YHPE+VKEAI LAL+K  
Sbjct: 613 ASSAKVIPAGLQKKTASLLEEYFGIRILDEAQQCIEELQSPDYHPEIVKEAINLALDKGA 672

Query: 411 PCVEPVIQLLEFLLNKNVLTTRDIGTGCLLYGSLLDDIGIDLPKAPNNFGEMVGKLVVAK 470
             V+P+++LLE L  K    T D+  GCLLYGSLL+DIGIDLPKAP  FGE+V +L+++ 
Sbjct: 673 SFVDPLVKLLEHLYTKKTFKTEDLENGCLLYGSLLEDIGIDLPKAPTQFGEVVARLILSC 732

Query: 471 SLDFIVLKEVLKKVEDNMFRRSIFTAAMKSIQSSPAGQEVLAVQGAEVQACESL 524
            L F   + +LK +ED  FR++IFT+  K++ + PAGQ +L+   A V AC SL
Sbjct: 733 GLRFEAAEGILKAMEDTFFRKAIFTSVTKTLGADPAGQAILSSHAAVVDACNSL 786
Functions in close association with EIF4B and EIF4A in ATP-dependent RNA-unwinding.
Triticum aestivum (taxid: 4565)
>sp|Q41583|IF4G2_WHEAT Eukaryotic translation initiation factor isoform 4G-2 OS=Triticum aestivum PE=2 SV=1 Back     alignment and function description
>sp|Q84PB3|IF4G1_ORYSJ Eukaryotic translation initiation factor isoform 4G-1 OS=Oryza sativa subsp. japonica GN=Os04g0499300 PE=2 SV=2 Back     alignment and function description
>sp|Q93ZT6|IF4G1_ARATH Eukaryotic translation initiation factor isoform 4G-1 OS=Arabidopsis thaliana GN=EIF(ISO)4G1 PE=1 SV=1 Back     alignment and function description
>sp|Q6K641|IF4G2_ORYSJ Eukaryotic translation initiation factor isoform 4G-2 OS=Oryza sativa subsp. japonica GN=Os02g0611500 PE=2 SV=1 Back     alignment and function description
>sp|O82233|IF4G2_ARATH Eukaryotic translation initiation factor isoform 4G-2 OS=Arabidopsis thaliana GN=EIF(ISO)4G2 PE=1 SV=1 Back     alignment and function description
>sp|B9FXV5|IF4G_ORYSJ Eukaryotic translation initiation factor 4G OS=Oryza sativa subsp. japonica GN=Os07g0555200 PE=2 SV=2 Back     alignment and function description
>sp|G5CEW6|IF4G_WHEAT Eukaryotic translation initiation factor 4G OS=Triticum aestivum PE=1 SV=1 Back     alignment and function description
>sp|Q76E23|IF4G_ARATH Eukaryotic translation initiation factor 4G OS=Arabidopsis thaliana GN=EIF4G PE=1 SV=2 Back     alignment and function description
>sp|Q04637|IF4G1_HUMAN Eukaryotic translation initiation factor 4 gamma 1 OS=Homo sapiens GN=EIF4G1 PE=1 SV=4 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query526
224143334 750 predicted protein [Populus trichocarpa] 0.994 0.697 0.779 0.0
359484894 795 PREDICTED: eukaryotic initiation factor 0.998 0.660 0.731 0.0
147833057 794 hypothetical protein VITISV_013807 [Viti 0.998 0.661 0.731 0.0
359484892 794 PREDICTED: eukaryotic initiation factor 0.998 0.661 0.731 0.0
359475890 791 PREDICTED: eukaryotic initiation factor 0.994 0.661 0.759 0.0
449455507 768 PREDICTED: eukaryotic initiation factor 0.986 0.675 0.740 0.0
356562555 789 PREDICTED: eukaryotic initiation factor 0.992 0.661 0.698 0.0
356562557 792 PREDICTED: eukaryotic initiation factor 0.992 0.659 0.698 0.0
357480009 779 Eukaryotic initiation factor iso-4F subu 0.990 0.668 0.703 0.0
356500679 789 PREDICTED: eukaryotic initiation factor 0.988 0.659 0.705 0.0
>gi|224143334|ref|XP_002324920.1| predicted protein [Populus trichocarpa] gi|222866354|gb|EEF03485.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  803 bits (2074), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/526 (77%), Positives = 459/526 (87%), Gaps = 3/526 (0%)

Query: 1   MYALLCSDLNEKLPPFPSDEPGGKDITFKRILLNHCQEAFEGADNTRAEIRQMTAPEQEM 60
           MYALLCSDLNEKLPPFPSDEPGGK+ITFKRILLN+CQEAFEGA N RAEI ++TAPEQEM
Sbjct: 228 MYALLCSDLNEKLPPFPSDEPGGKEITFKRILLNNCQEAFEGAGNLRAEISKLTAPEQEM 287

Query: 61  ERMDQERLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLENDGKTCPAEENVEAICQ 120
           ER D+ERLVKLRT+GN+RLIGELLKQKMVPEKIVHHIVQELL ND KTCPAEENVEAICQ
Sbjct: 288 ERRDKERLVKLRTMGNMRLIGELLKQKMVPEKIVHHIVQELLGNDSKTCPAEENVEAICQ 347

Query: 121 FFNTIGKQLDENPKSRRVNDVYFSRLKELTTNSQLVPRLRFMIHDVLDLRANNWVPRREE 180
           FFNTIGKQLDENPK+RRVNDVYFSRLKELTTN  L PR RFM+ DVLDLRAN+WVPRREE
Sbjct: 348 FFNTIGKQLDENPKARRVNDVYFSRLKELTTNPHLAPRCRFMVRDVLDLRANSWVPRREE 407

Query: 181 MKAKTITEIHSEAEKNLGLRPGATAMMRNGRTGATGGMGPGGFPIARPGTGGMMPGMPGT 240
           +KAKTI+EIHSEAEKNLGLRPGATA+MRNGR  ATGG+GPGGFPI RPG+GGMMPGMPG 
Sbjct: 408 VKAKTISEIHSEAEKNLGLRPGATAVMRNGRN-ATGGVGPGGFPIGRPGSGGMMPGMPGM 466

Query: 241 QKMPGMPGFDTDNWEVPRSRTMPRGDSKSPSQFPGRVQSPLIGKSPSINSKFLPQGSGGI 300
            KMPG+PG D DNWEVPRSR MPRG+S  P+   G V + LI KSP +N++ LPQGSGG+
Sbjct: 467 MKMPGIPGLDADNWEVPRSRAMPRGNSFGPTHVAGHVPTSLINKSPPLNARLLPQGSGGV 526

Query: 301 ISGKTSALLQGSPTPSARPSGIASGVEPLTQYTKPVAPAASVVASPEKPSAPVTKLNLAD 360
           I+GK S LLQGS  PS RP G A+  EP  Q  KPVAPA S + SP+KP AP T+ N  D
Sbjct: 527 IAGKPSLLLQGSGAPS-RP-GFATRTEPAGQTPKPVAPAVSAIPSPQKPLAPTTRSNPDD 584

Query: 361 LRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKIPPCVEPVIQLL 420
           LR+KT+SLLEEYFS+RILDEALQCVEEL+  ++HPEV KEAIALALEK PPCVEPV++LL
Sbjct: 585 LRRKTISLLEEYFSVRILDEALQCVEELKDTSFHPEVAKEAIALALEKSPPCVEPVVKLL 644

Query: 421 EFLLNKNVLTTRDIGTGCLLYGSLLDDIGIDLPKAPNNFGEMVGKLVVAKSLDFIVLKEV 480
           EFLL KNVLT RDIGTGCLLYGS LDDIGIDLPKAPNNFGE++G LVVA+ LDF V KEV
Sbjct: 645 EFLLTKNVLTARDIGTGCLLYGSSLDDIGIDLPKAPNNFGEILGSLVVAQGLDFEVFKEV 704

Query: 481 LKKVEDNMFRRSIFTAAMKSIQSSPAGQEVLAVQGAEVQACESLLT 526
           LKKVED+ FR++IF++AM SI S+P+GQEVLA QG+ +QACESLL+
Sbjct: 705 LKKVEDDRFRKAIFSSAMMSINSNPSGQEVLATQGSNIQACESLLS 750

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359484894|ref|XP_003633181.1| PREDICTED: eukaryotic initiation factor iso-4F subunit p82-34-like isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147833057|emb|CAN70546.1| hypothetical protein VITISV_013807 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359484892|ref|XP_002277218.2| PREDICTED: eukaryotic initiation factor iso-4F subunit p82-34-like isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359475890|ref|XP_002285559.2| PREDICTED: eukaryotic initiation factor iso-4F subunit p82-34-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449455507|ref|XP_004145494.1| PREDICTED: eukaryotic initiation factor iso-4F subunit p82-34-like [Cucumis sativus] gi|449528249|ref|XP_004171118.1| PREDICTED: eukaryotic initiation factor iso-4F subunit p82-34-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356562555|ref|XP_003549535.1| PREDICTED: eukaryotic initiation factor iso-4F subunit p82-34-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|356562557|ref|XP_003549536.1| PREDICTED: eukaryotic initiation factor iso-4F subunit p82-34-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|357480009|ref|XP_003610290.1| Eukaryotic initiation factor iso-4F subunit p82-34 [Medicago truncatula] gi|355511345|gb|AES92487.1| Eukaryotic initiation factor iso-4F subunit p82-34 [Medicago truncatula] Back     alignment and taxonomy information
>gi|356500679|ref|XP_003519159.1| PREDICTED: eukaryotic initiation factor iso-4F subunit p82-34-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query526
TAIR|locus:2061370747 eIFiso4G2 "AT2G24050" [Arabido 0.389 0.274 0.746 9.1e-154
TAIR|locus:2174353780 eIFiso4G1 "AT5G57870" [Arabido 0.971 0.655 0.561 9e-148
UNIPROTKB|Q1MSJ4793 eif(iso)4g "Putative eukaryoti 0.990 0.656 0.567 7.3e-146
UNIPROTKB|Q1MSJ3793 eif(iso)4g "Putative eukaryoti 0.990 0.656 0.565 1.9e-145
UNIPROTKB|Q1MSJ1793 eif(iso)4g "Putative eukaryoti 0.990 0.656 0.563 8.4e-145
UNIPROTKB|Q1MSJ0793 eif(iso)4g "Putative eukaryoti 0.990 0.656 0.561 2.2e-144
UNIPROTKB|Q1MSJ2790 eif(iso)4g "Putative eukaryoti 0.984 0.655 0.557 3.7e-142
TAIR|locus:2131919263 AT4G30680 "AT4G30680" [Arabido 0.423 0.847 0.495 2.6e-54
TAIR|locus:20819271727 EIF4G "AT3G60240" [Arabidopsis 0.355 0.108 0.431 6.7e-40
TAIR|locus:2027124223 AT1G62410 "AT1G62410" [Arabido 0.321 0.757 0.479 5.5e-38
TAIR|locus:2061370 eIFiso4G2 "AT2G24050" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 811 (290.5 bits), Expect = 9.1e-154, Sum P(2) = 9.1e-154
 Identities = 153/205 (74%), Positives = 178/205 (86%)

Query:     1 MYALLCSDLNEKLPPFPSDEPGGKDITFKRILLNHCQEAFEGADNTRAEIRQMTAPEQEM 60
             MYALLC D+N +LP FPS+EPGGK+ITFKR+LLN+CQEAFEGA   + EIRQMT P+QEM
Sbjct:   228 MYALLCFDINGQLPSFPSEEPGGKEITFKRVLLNNCQEAFEGAGKLKEEIRQMTNPDQEM 287

Query:    61 ERMDQERLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLENDGKTCPAEENVEAICQ 120
             ERMD+E++ KLRTLGNIRLIGELLKQKMVPEKIVHHIVQELL +D K CPAE +VEA+CQ
Sbjct:   288 ERMDKEKMAKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLGDDTKACPAEGDVEALCQ 347

Query:   121 FFNTIGKQLDENPKSRRVNDVYFSRLKELTTNSQLVPRLRFMIHDVLDLRANNWVPRREE 180
             FF TIGKQLD++P+SR +ND YF RLKEL  + QL  RLRFM+ +V+DLRAN WVPRREE
Sbjct:   348 FFITIGKQLDDSPRSRGINDTYFGRLKELARHPQLELRLRFMVQNVVDLRANKWVPRREE 407

Query:   181 MKAKTITEIHSEAEKNLGLRPGATA 205
             +KAK I EIHSEAE+NLG+RPGA A
Sbjct:   408 VKAKKINEIHSEAERNLGMRPGAMA 432
GO:0003723 "RNA binding" evidence=ISS
GO:0005737 "cytoplasm" evidence=ISM
GO:0006412 "translation" evidence=ISS
GO:0016070 "RNA metabolic process" evidence=IEA
GO:0005829 "cytosol" evidence=IDA
GO:0009165 "nucleotide biosynthetic process" evidence=RCA
TAIR|locus:2174353 eIFiso4G1 "AT5G57870" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q1MSJ4 eif(iso)4g "Putative eukaryotic translation initiation factor 4 gamma" [Oryza sativa Indica Group (taxid:39946)] Back     alignment and assigned GO terms
UNIPROTKB|Q1MSJ3 eif(iso)4g "Putative eukaryotic translation initiation factor 4 gamma" [Oryza sativa Indica Group (taxid:39946)] Back     alignment and assigned GO terms
UNIPROTKB|Q1MSJ1 eif(iso)4g "Putative eukaryotic translation initiation factor 4 gamma" [Oryza glaberrima (taxid:4538)] Back     alignment and assigned GO terms
UNIPROTKB|Q1MSJ0 eif(iso)4g "Putative eukaryotic translation initiation factor 4 gamma" [Oryza glaberrima (taxid:4538)] Back     alignment and assigned GO terms
UNIPROTKB|Q1MSJ2 eif(iso)4g "Putative eukaryotic translation initiation factor 4 gamma" [Oryza glaberrima (taxid:4538)] Back     alignment and assigned GO terms
TAIR|locus:2131919 AT4G30680 "AT4G30680" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2081927 EIF4G "AT3G60240" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2027124 AT1G62410 "AT1G62410" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q84PB3IF4G1_ORYSJNo assigned EC number0.62240.97710.6481yesno
Q93ZT6IF4G1_ARATHNo assigned EC number0.61520.97140.6551yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query526
pfam02854198 pfam02854, MIF4G, MIF4G domain 7e-31
pfam02847113 pfam02847, MA3, MA3 domain 1e-29
smart00544113 smart00544, MA3, Domain in DAP-5, eIF4G, MA-3 and 5e-28
smart00543200 smart00543, MIF4G, Middle domain of eukaryotic ini 1e-26
>gnl|CDD|217253 pfam02854, MIF4G, MIF4G domain Back     alignment and domain information 
 Score =  118 bits (298), Expect = 7e-31
 Identities = 55/176 (31%), Positives = 85/176 (48%), Gaps = 34/176 (19%)

Query: 1   MYALLCSDLNEKLPPFPSDEPGGKDITFKRILLNHCQEAFEGADNTRAEIRQMTAPEQEM 60
            YA LC+ LN K P             F  +LLN  QE FE                   
Sbjct: 54  AYARLCAGLNSKNP------------DFGELLLNRLQEEFEKGVE--------------- 86

Query: 61  ERMDQERLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLENDGKTCP-AEENVEAIC 119
              ++ER  + R LG +R +GEL   K++ EKI+   ++ELLE+  +  P  E ++E + 
Sbjct: 87  ---EEERGNRKRRLGLVRFLGELFNFKVLTEKIILECLKELLESLTEEDPRDEFSLEILL 143

Query: 120 QFFNTIGKQLDENPKSRRVNDVYFSRLKE--LTTNSQLVPRLRFMIHDVLDLRANN 173
               T GK LD   K +++ D    R+++  L+ + +L  RLRFM+ D+++LR N 
Sbjct: 144 LLLTTCGKLLD-REKLKKLMDEILERIQKYLLSADPELSSRLRFMLEDLIELRKNK 198

MIF4G is named after Middle domain of eukaryotic initiation factor 4G (eIF4G). Also occurs in NMD2p and CBP80. The domain is rich in alpha-helices and may contain multiple alpha-helical repeats. In eIF4G, this domain binds eIF4A, eIF3, RNA and DNA. Length = 198
>gnl|CDD|111714 pfam02847, MA3, MA3 domain Back     alignment and domain information
>gnl|CDD|214714 smart00544, MA3, Domain in DAP-5, eIF4G, MA-3 and other proteins Back     alignment and domain information
>gnl|CDD|214713 smart00543, MIF4G, Middle domain of eukaryotic initiation factor 4G (eIF4G) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 526
KOG0401970 consensus Translation initiation factor 4F, riboso 100.0
smart00544113 MA3 Domain in DAP-5, eIF4G, MA-3 and other protein 99.91
PF02847113 MA3: MA3 domain; InterPro: IPR003891 This entry re 99.91
PF02854209 MIF4G: MIF4G domain; InterPro: IPR003890 This entr 99.89
KOG0403 645 consensus Neoplastic transformation suppressor Pdc 99.85
KOG0403645 consensus Neoplastic transformation suppressor Pdc 99.84
smart00543200 MIF4G Middle domain of eukaryotic initiation facto 99.81
KOG2140739 consensus Uncharacterized conserved protein [Gener 99.43
KOG2051 1128 consensus Nonsense-mediated mRNA decay 2 protein [ 98.79
KOG3942348 consensus MIF4G domain-containing protein [Transla 98.43
KOG2141822 consensus Protein involved in high osmolarity sign 97.94
KOG20511128 consensus Nonsense-mediated mRNA decay 2 protein [ 96.77
KOG0401970 consensus Translation initiation factor 4F, riboso 96.13
>KOG0401 consensus Translation initiation factor 4F, ribosome/mRNA-bridging subunit (eIF-4G) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=1.5e-53  Score=490.26  Aligned_cols=513  Identities=33%  Similarity=0.477  Sum_probs=369.9

Q ss_pred             CHHHHHHHHhhhCCCCCCCCCCCcchhHHHHHHHHHHHHHhccc-ccHHHHhcCCChHH-HHHHHHHHHHHHhhhhhhHH
Q 009767            1 MYALLCSDLNEKLPPFPSDEPGGKDITFKRILLNHCQEAFEGAD-NTRAEIRQMTAPEQ-EMERMDQERLVKLRTLGNIR   78 (526)
Q Consensus         1 mYA~LC~~L~~~~~~~~~~~~~~~~~~Fr~~LL~~cQ~eFe~~~-~~~~~~~~~~~~e~-e~e~~~~~~~~K~r~lGnir   78 (526)
                      |||+||..|.. .+.++.-+.++..++||+.||++||++|+... ...+++..+..+++ |.+.++.+.++++|++|||+
T Consensus       403 ~yA~lc~~l~~-~~~~~~~~~~~~~~~fr~~lL~rcq~~fe~~~~~~~~~~~~~~~~~~~e~~le~~k~~~~~rtlgn~~  481 (970)
T KOG0401|consen  403 MYARLCFDLEG-PPSEPELDMGGDEINFRRLLLNRCQKEFEGEDDKIADEYSEAEEPDELEEELEEEKYILRRRTLGNFR  481 (970)
T ss_pred             hcchhcccccC-CccCCCcCCCCCcccHHHHHHHHhHHHhhcccHHHHHHhhhhcCchhHHHHHHhccceecCCccchHH
Confidence            79999999988 55555445566789999999999999999987 56667776665554 55566667789999999999


Q ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHHHhhhhhcCCcchhhHHHHHHHHHHHHhCCCCChh
Q 009767           79 LIGELLKQKMVPEKIVHHIVQELLENDGKTCPAEENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKELTTNSQLVPR  158 (526)
Q Consensus        79 FIGELfk~~~l~e~ii~~ci~~Ll~~~~~~~p~ee~iE~lc~LL~tiG~~Ld~~~~~~~~~d~~f~~l~~l~~~~~ls~R  158 (526)
                      |||+||+.+|++++|||.|++.||....   ++|++|||+|.|++|||+.||........||.||.+++.++..+.+++|
T Consensus       482 ~ig~l~~~~ml~e~i~~~~v~~Ll~~~~---~~ee~ie~lc~f~~tig~~lD~~~~s~r~md~~~~~~k~~~~~~~~s~r  558 (970)
T KOG0401|consen  482 FIGELFKLKMLTEKIVHACVQKLLSDDQ---PSEESIECLCRFLTTIGKKLDFSKESPRNMDEYFNSMKNLKRKPQRSNR  558 (970)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcccc---ccchhhhhHHhhhhcccccccccCcccchhHHHHHHHHHhhhhhhhccc
Confidence            9999999999999999999999998742   6899999999999999999997544333399999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCccccccCCC-cHHHHHHHHHHhcCCCCchhhhhhcCCCCCC---CC-C----CCCCCCCCCCC
Q 009767          159 LRFMIHDVLDLRANNWVPRREEMKAK-TITEIHSEAEKNLGLRPGATAMMRNGRTGAT---GG-M----GPGGFPIARPG  229 (526)
Q Consensus       159 irfmi~dvidlR~~~W~~r~~~~~pk-ti~~i~~e~~~~~~~~~~~~~~~r~~~~~~~---~~-~----~~g~~~~~~~~  229 (526)
                      +|||+++++|||.++|++|+.+.+++ +|++||.++.++....+.....++.++.+.-   +. .    .+.+....+..
T Consensus       559 ~RfM~~~~idlR~~~w~~rr~~~~~~~~ieei~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  638 (970)
T KOG0401|consen  559 IRFMLQSVIDLRKSGWGPRRAEETNDKPIEEIAPEAPSANRWSPKSLSKKTEGRLAEESDSGLLGKEVVERKGKSGLRKL  638 (970)
T ss_pred             hhhhhccccccccccccchhcccCCCCchhhcchhhhhhcccCcccccccccccccccccccccCccccccccccccccC
Confidence            99999999999999999999987766 9999999998887654544333344332110   00 0    01111222333


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCcccCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CccCCCCCCCCcCC
Q 009767          230 TGGMMPGMPGTQKMPGMPGFDTDNWEVPRSR--TMPRGDSKSPSQFPGRVQSPLIGKSPSIN----SKFLPQGSGGIISG  303 (526)
Q Consensus       230 ~gg~~p~~~~~~~~~~~~g~~~~~~~~~~~~--s~~~~~~~~~~~~~~~~~~~~~~k~~~~~----~~~~p~~s~~~~~~  303 (526)
                      .+.++++++........+..+.++|.+....  +.++......  +......+..++.....    ....++|+.+....
T Consensus       639 ~~e~~~~i~~~~~~~~~~~~~e~~~~~~k~~~~~~~~k~~~~~--~~~~~~~~~~~~~~~~~s~~~~~~~~~g~~~~~~~  716 (970)
T KOG0401|consen  639 TPEMFDKISDPILDIADQSMDEEDGEASKQKGEQGGRKASDEQ--HFSSMRAPALEKVVPSLSSDIDDKRNRGSNGELLS  716 (970)
T ss_pred             ChhhcccccccccccchhhccccccchhhhcccccccccCccc--cccccCCccccccccccccccccccccCCcccccc
Confidence            3444444443323333445566666654322  1111111100  00011111111111101    12334444331111


Q ss_pred             C--CccccC---CCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCC--CCCHHHHHHHHHHHHHHHhcCC
Q 009767          304 K--TSALLQ---GSPTPSARPSGIASGVEPLTQYTKPVAPAASVVASPEKPSAPVT--KLNLADLRKKTVSLLEEYFSIR  376 (526)
Q Consensus       304 k--~s~~~~---~~~~p~~r~~~~~~~~~~~~~~~~~~k~~~~~p~~~~~~~~~~~--~~s~eel~kk~~~il~EY~~~~  376 (526)
                      .  .++...   ..+....++++....+     .+.-..+. -.++.+.+.++.+.  .++.+.+..+++.|+.||++..
T Consensus       717 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~-----~~e~~~~~-~~~~~~~~~~~~~~v~~~~~~~l~~~sk~l~ee~~~~~  790 (970)
T KOG0401|consen  717 DSYLSARCHEEFENGWSRELPSGKDGER-----EPEMMSPE-YYAAKAAKRAGLGLVIALSSELLELLSKSLLEEFLSLR  790 (970)
T ss_pred             ccccchhhhhhccccccccCCCCccccc-----chhhcCcc-cchhhhhhccCCcchhhhhHHHHHHHHHHHHHHHHHHh
Confidence            1  111111   0000000111110000     00000110 01111222333444  7899999999999999999999


Q ss_pred             CHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCCCcChHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcchhhhcCCCchh
Q 009767          377 ILDEALQCVEELRAPTYHPEVVKEAIALALEKIPPCVEPVIQLLEFLLNKNVLTTRDIGTGCLLYGSLLDDIGIDLPKAP  456 (526)
Q Consensus       377 D~~Ea~~~i~eL~~p~~~~~~V~~~I~~aLE~~~~~re~v~~LL~~L~~~~~ls~~q~~~Gf~~vl~~l~Dl~iDiP~a~  456 (526)
                      +.+|++.|++++++|.+|+.+|..+|+..|++++..|+++++||..|+..+.++.+++..||..++..++|+.||+|++|
T Consensus       791 ~~~~~~~~ie~l~S~~~~~~~v~~~v~~~l~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~d~pk~w  870 (970)
T KOG0401|consen  791 LEKEALKCIEELESPSLLLKTVGENIEPTLEKSPQAVEELLQLLDILVSKNPLSIETLEIGYREKFKLADDKELDLPKGW  870 (970)
T ss_pred             hhhhhhhhhhcccchhhhHHHHHHhcCcccccChhHHHHHHHHHHHHHhcCcccHHHHhhhHHHHHhhhHHHhcccccch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCh-HHHHHHHHhhhchhHHHHHHHHHHHHHhcCCCchhhHHhhhhhHHHHhhhh
Q 009767          457 NNFGEMVGKLVVAKSLDF-IVLKEVLKKVEDNMFRRSIFTAAMKSIQSSPAGQEVLAVQGAEVQACESLL  525 (526)
Q Consensus       457 ~~la~~iar~i~~~~l~~-~~i~~~~~~~~~~~~~~~~l~~~l~~l~~~~~g~~~~~~~~~~~~~~~~~~  525 (526)
                      .|+++|++..+..+++++ ..+..+...+.+.+++..|+.+++..+...-++.|+.+..+....+|..++
T Consensus       871 ~~~~e~~gp~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  940 (970)
T KOG0401|consen  871 NYIKEFLGPLIHQKILDESELVREILKNMRPNGRRSNVLFSVLEIVEKELGRADLGDIQRESFLSTKTLL  940 (970)
T ss_pred             hHHHHhhhhHhhhccccHHHHHHHHhhcCCccccccchHHHHHHHHHHhhhHHHHHHHHHHhcccchhcc
Confidence            999999999999999999 445677778999999999999999999998888999999999999998764

>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins Back     alignment and domain information
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ] Back     alignment and domain information
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain Back     alignment and domain information
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms] Back     alignment and domain information
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms] Back     alignment and domain information
>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G) Back     alignment and domain information
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only] Back     alignment and domain information
>KOG2051 consensus Nonsense-mediated mRNA decay 2 protein [RNA processing and modification] Back     alignment and domain information
>KOG3942 consensus MIF4G domain-containing protein [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms] Back     alignment and domain information
>KOG2051 consensus Nonsense-mediated mRNA decay 2 protein [RNA processing and modification] Back     alignment and domain information
>KOG0401 consensus Translation initiation factor 4F, ribosome/mRNA-bridging subunit (eIF-4G) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query526
1hu3_A260 Middle Domain Of Human Eif4gii Length = 260 7e-26
2vso_E284 Crystal Structure Of A Translation Initiation Compl 3e-08
1ug3_A 339 C-Terminal Portion Of Human Eif4gi Length = 339 8e-07
2ion_A152 Crystal Structure Of The C-terminal Ma3 Domain Of P 2e-04
3eiq_C358 Crystal Structure Of Pdcd4-eif4a Length = 358 2e-04
2nsz_A129 1.15 Angstrom Crystal Structure Of The Ma3 Domain O 3e-04
3eij_A321 Crystal Structure Of Pdcd4 Length = 321 3e-04
2ggf_A137 Solution Structure Of The Ma3 Domain Of Human Progr 3e-04
2hm8_A136 Solution Structure Of The C-Terminal Ma-3 Domain Of 3e-04
2kzt_B131 Structure Of The Tandem Ma-3 Region Of Pdcd4 Length 3e-04
2iol_A150 Crystal Structure Of The C-Terminal Ma3 Domain Of P 7e-04
2zu6_B307 Crystal Structure Of The Eif4a-Pdcd4 Complex Length 8e-04
>pdb|1HU3|A Chain A, Middle Domain Of Human Eif4gii Length = 260 Back     alignment and structure 
Iteration: 1

 Score =  115 bits (288), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 71/188 (37%), Positives = 107/188 (56%), Gaps = 20/188 (10%)
Query: 18  SDEPGGKDITFKRILLNHCQEAFE--GADN-----TRAEIRQMTAPEQEMERMDQ----E 66
           +D+PG   + F+++LLN CQ+ FE   AD+      + E+   +APE+     D+    +
Sbjct: 81  ADKPGNT-VNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAASAPEERTRLHDELEEAK 139
Query: 67  RLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLENDGKTCPAEENVEAICQFFNTIG 126
              + R++GNI+ IGEL K K + E I H  V +LL+N       EE++E +C+   TIG
Sbjct: 140 DKARRRSIGNIKFIGELFKLKXLTEAIXHDCVVKLLKNHD-----EESLECLCRLLTTIG 194
Query: 127 KQLD-ENPKSRRVNDVYFSRLKELTTNSQLVPRLRFMIHDVLDLRANNWVPRREEMKAKT 185
           K LD E  K R   D YF++ +++    +   R+RF + DV+DLR  NWV RR +   KT
Sbjct: 195 KDLDFEKAKPR--XDQYFNQXEKIVKERKTSSRIRFXLQDVIDLRLCNWVSRRADQGPKT 252
Query: 186 ITEIHSEA 193
           I +IH EA
Sbjct: 253 IEQIHKEA 260
>pdb|2VSO|E Chain E, Crystal Structure Of A Translation Initiation Complex Length = 284 Back     alignment and structure
>pdb|1UG3|A Chain A, C-Terminal Portion Of Human Eif4gi Length = 339 Back     alignment and structure
>pdb|2ION|A Chain A, Crystal Structure Of The C-terminal Ma3 Domain Of Pdcd4 (mouse); Form2 Length = 152 Back     alignment and structure
>pdb|3EIQ|C Chain C, Crystal Structure Of Pdcd4-eif4a Length = 358 Back     alignment and structure
>pdb|2NSZ|A Chain A, 1.15 Angstrom Crystal Structure Of The Ma3 Domain Of Pdcd4 Length = 129 Back     alignment and structure
>pdb|3EIJ|A Chain A, Crystal Structure Of Pdcd4 Length = 321 Back     alignment and structure
>pdb|2GGF|A Chain A, Solution Structure Of The Ma3 Domain Of Human Programmed Cell Death 4 Length = 137 Back     alignment and structure
>pdb|2HM8|A Chain A, Solution Structure Of The C-Terminal Ma-3 Domain Of Pdcd4 Length = 136 Back     alignment and structure
>pdb|2KZT|B Chain B, Structure Of The Tandem Ma-3 Region Of Pdcd4 Length = 131 Back     alignment and structure
>pdb|2IOL|A Chain A, Crystal Structure Of The C-Terminal Ma3 Domain Of Pdcd4 (Mouse); Form 1 Length = 150 Back     alignment and structure
>pdb|2ZU6|B Chain B, Crystal Structure Of The Eif4a-Pdcd4 Complex Length = 307 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query526
1hu3_A260 EIF4GII; heat repeat, translation; 2.37A {Homo sap 1e-51
2vso_E284 Eukaryotic initiation factor 4F subunit P150; acet 3e-44
2i2o_A224 EIF4G-like protein; protein structure initiative, 3e-36
2rg8_A165 Programmed cell death protein 4; MA3 domain, heat 4e-36
2nsz_A129 Programmed cell death protein 4; PDCD4, tumor supp 7e-34
3rk6_A234 Polyadenylate-binding protein-interacting protein; 2e-33
3eiq_C 358 Programmed cell death protein 4; PDCD4, anti-oncog 3e-33
3eiq_C358 Programmed cell death protein 4; PDCD4, anti-oncog 3e-28
2zu6_B 307 Programmed cell death protein 4; protein-protein c 4e-33
2zu6_B307 Programmed cell death protein 4; protein-protein c 3e-30
2ion_A152 PDCD4, programmed cell death 4, PDCD4; alpha-helic 8e-33
1ug3_A 339 EIF4GI, eukaryotic protein synthesis initiation fa 2e-31
3l6a_A 364 Eukaryotic translation initiation factor 4 gamma; 2e-30
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-06
1uw4_B248 UPF2, regulator of nonsense transcripts 2; nonsens 6e-11
>1hu3_A EIF4GII; heat repeat, translation; 2.37A {Homo sapiens} SCOP: a.118.1.14 Length = 260 Back     alignment and structure
 Score =  176 bits (446), Expect = 1e-51
 Identities = 72/204 (35%), Positives = 111/204 (54%), Gaps = 19/204 (9%)

Query: 1   MYALLCSDLNEKLPPFPSDEPGGKDITFKRILLNHCQEAFE-------GADNTRAEIRQM 53
            YA +C  L     P       G  + F+++LLN CQ+ FE         +  + E+   
Sbjct: 65  AYANMCRCLVTLKVPMADKP--GNTVNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAA 122

Query: 54  TAPEQ----EMERMDQERLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLENDGKTC 109
           +APE+      E  + +   + R++GNI+ IGEL K KM+ E I+H  V +LL+N     
Sbjct: 123 SAPEERTRLHDELEEAKDKARRRSIGNIKFIGELFKLKMLTEAIMHDCVVKLLKN----- 177

Query: 110 PAEENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKELTTNSQLVPRLRFMIHDVLDL 169
             EE++E +C+   TIGK LD   K++   D YF++++++    +   R+RFM+ DV+DL
Sbjct: 178 HDEESLECLCRLLTTIGKDLDF-EKAKPRMDQYFNQMEKIVKERKTSSRIRFMLQDVIDL 236

Query: 170 RANNWVPRREEMKAKTITEIHSEA 193
           R  NWV RR +   KTI +IH EA
Sbjct: 237 RLCNWVSRRADQGPKTIEQIHKEA 260
>2vso_E Eukaryotic initiation factor 4F subunit P150; acetylation, ATP-binding, phosphoprotein, protein biosynthesis, translation regulation; HET: AMP; 2.6A {Saccharomyces cerevisiae} PDB: 2vsx_E* Length = 284 Back     alignment and structure
>2i2o_A EIF4G-like protein; protein structure initiative, PSI, cente eukaryotic structural genomics, CESG, structural genomics, function; HET: MSE; 1.92A {Danio rerio} Length = 224 Back     alignment and structure
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A Length = 165 Back     alignment and structure
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A Length = 129 Back     alignment and structure
>3rk6_A Polyadenylate-binding protein-interacting protein; heat fold, PABP, EIF4A, EIF3, translation regulator; 2.00A {Homo sapiens} Length = 234 Back     alignment and structure
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus} Length = 358 Back     alignment and structure
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus} Length = 358 Back     alignment and structure
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A Length = 307 Back     alignment and structure
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A Length = 307 Back     alignment and structure
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A Length = 152 Back     alignment and structure
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 Length = 339 Back     alignment and structure
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens} Length = 364 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1uw4_B UPF2, regulator of nonsense transcripts 2; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: a.118.1.14 Length = 248 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query526
1hu3_A260 EIF4GII; heat repeat, translation; 2.37A {Homo sap 100.0
2vso_E284 Eukaryotic initiation factor 4F subunit P150; acet 100.0
2i2o_A224 EIF4G-like protein; protein structure initiative, 100.0
3rk6_A234 Polyadenylate-binding protein-interacting protein; 100.0
2rg8_A165 Programmed cell death protein 4; MA3 domain, heat 100.0
2ion_A152 PDCD4, programmed cell death 4, PDCD4; alpha-helic 99.97
2nsz_A129 Programmed cell death protein 4; PDCD4, tumor supp 99.97
1ug3_A 339 EIF4GI, eukaryotic protein synthesis initiation fa 99.96
2zu6_B307 Programmed cell death protein 4; protein-protein c 99.95
3eiq_C 358 Programmed cell death protein 4; PDCD4, anti-oncog 99.95
3eiq_C358 Programmed cell death protein 4; PDCD4, anti-oncog 99.95
3l6a_A 364 Eukaryotic translation initiation factor 4 gamma; 99.94
2zu6_B 307 Programmed cell death protein 4; protein-protein c 99.94
1uw4_B248 UPF2, regulator of nonsense transcripts 2; nonsens 99.52
1h2v_C 771 80 kDa nuclear CAP binding protein; CAP-binding-co 97.69
>1hu3_A EIF4GII; heat repeat, translation; 2.37A {Homo sapiens} SCOP: a.118.1.14 Back     alignment and structure
Probab=100.00  E-value=9.7e-43  Score=348.51  Aligned_cols=184  Identities=40%  Similarity=0.715  Sum_probs=129.3

Q ss_pred             CHHHHHHHHhh-hCCCCCCCCCCCcchhHHHHHHHHHHHHHhcccccHH-------HHhcCCChHH----HHHHHHHHHH
Q 009767            1 MYALLCSDLNE-KLPPFPSDEPGGKDITFKRILLNHCQEAFEGADNTRA-------EIRQMTAPEQ----EMERMDQERL   68 (526)
Q Consensus         1 mYA~LC~~L~~-~~~~~~~~~~~~~~~~Fr~~LL~~cQ~eFe~~~~~~~-------~~~~~~~~e~----e~e~~~~~~~   68 (526)
                      |||+||..|+. .+|.+   +.++...+||++||++||++|++.+....       +++....+++    +.|.++++.+
T Consensus        65 ~YA~Lc~~L~~~~~p~~---~~~~~~~~Fr~~LL~rcq~eFe~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~e~ee~~~~  141 (260)
T 1hu3_A           65 AYANMCRCLVTLKVPMA---DKPGNTVNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAASAPEERTRLHDELEEAKDK  141 (260)
T ss_dssp             HHHHHHHHHTTCCCC------------CHHHHHHHHHHHHHHHHTC------------------------------CCSS
T ss_pred             HHHHHHHHHHHhhCCcc---cCCccchHHHHHHHHHHHHHHhcccchhhhHHHHhhhhcccCCHHHHHHhhhHHHHHHHH
Confidence            79999999988 46543   23345688999999999999999875321       1111111111    0111222356


Q ss_pred             HHhhhhhhHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHHHhhhhhcCCcchhhHHHHHHHHHH
Q 009767           69 VKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLENDGKTCPAEENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKE  148 (526)
Q Consensus        69 ~K~r~lGnirFIGELfk~~~l~e~ii~~ci~~Ll~~~~~~~p~ee~iE~lc~LL~tiG~~Ld~~~~~~~~~d~~f~~l~~  148 (526)
                      .|+|++|||+||||||+++||+++|||.||..||++     |+|++|||+|.||+|||+.|++ +.++..|+.||.+|+.
T Consensus       142 ~k~r~lg~i~FIgeLy~~~~l~~~i~~~~l~~Ll~~-----~~e~~iE~l~~lL~tvG~~L~~-~~~~~~l~~~f~~l~~  215 (260)
T 1hu3_A          142 ARRRSIGNIKFIGELFKLKMLTEAIMHDCVVKLLKN-----HDEESLECLCRLLTTIGKDLDF-EKAKPRMDQYFNQMEK  215 (260)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHS-----CSHHHHHHHHHHHHHHHHHHCC-TTTHHHHHHHHHHHHH
T ss_pred             HHHHHHhHHHHHHHHHhcCCCCHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence            889999999999999999999999999999999986     7999999999999999999996 4456789999999999


Q ss_pred             HHhCCCCChhHHHHHHHHHHHHhCCCCccccccCCCcHHHHHHHH
Q 009767          149 LTTNSQLVPRLRFMIHDVLDLRANNWVPRREEMKAKTITEIHSEA  193 (526)
Q Consensus       149 l~~~~~ls~Rirfmi~dvidlR~~~W~~r~~~~~pkti~~i~~e~  193 (526)
                      ++.+.++|+|+||||+||+|||+|||++++.+.+||||+|||+||
T Consensus       216 ~~~~~~ls~Rirfmi~~l~dLR~~~W~~~~~~~~pkti~~i~~ea  260 (260)
T 1hu3_A          216 IVKERKTSSRIRFMLQDVIDLRLCNWVSRRADQGPKTIEQIHKEA  260 (260)
T ss_dssp             HHHSCSSCHHHHHHHHHHHHHHHTTTCC-----------------
T ss_pred             HHhCCCCCHHHHHHHHHHHHHHHcCCCCCccccCCCcHHHHHhhC
Confidence            999999999999999999999999999999999999999999986
>2vso_E Eukaryotic initiation factor 4F subunit P150; acetylation, ATP-binding, phosphoprotein, protein biosynthesis, translation regulation; HET: AMP; 2.6A {Saccharomyces cerevisiae} PDB: 2vsx_E* Back     alignment and structure
>2i2o_A EIF4G-like protein; protein structure initiative, PSI, cente eukaryotic structural genomics, CESG, structural genomics, function; HET: MSE; 1.92A {Danio rerio} Back     alignment and structure
>3rk6_A Polyadenylate-binding protein-interacting protein; heat fold, PABP, EIF4A, EIF3, translation regulator; 2.00A {Homo sapiens} Back     alignment and structure
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A Back     alignment and structure
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A Back     alignment and structure
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 Back     alignment and structure
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A Back     alignment and structure
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus} Back     alignment and structure
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus} Back     alignment and structure
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens} Back     alignment and structure
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A Back     alignment and structure
>1uw4_B UPF2, regulator of nonsense transcripts 2; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: a.118.1.14 Back     alignment and structure
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 526
d1hu3a_243 a.118.1.14 (A:) Eukaryotic initiation factor eIF4G 1e-40
d1ug3a1193 a.118.1.14 (A:1235-1427) Eukaryotic initiation fac 3e-33
d1uw4b_248 a.118.1.14 (B:) Regulator of nonsense transcripts 1e-31
d2nsza1129 a.118.1.14 (A:322-450) Programmed cell death 4, PD 2e-31
>d1hu3a_ a.118.1.14 (A:) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]} Length = 243 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: Eukaryotic initiation factor eIF4G
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  144 bits (365), Expect = 1e-40
 Identities = 63/186 (33%), Positives = 101/186 (54%), Gaps = 19/186 (10%)

Query: 1   MYALLCSDLNEKLPPFPSDEPGGKDITFKRILLNHCQEAFEGA-------DNTRAEIRQM 53
            YA +C  L     P    +  G  + F+++LLN CQ+ FE         +  + E+   
Sbjct: 65  AYANMCRCLVTLKVPM--ADKPGNTVNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAA 122

Query: 54  TAPEQEM----ERMDQERLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLENDGKTC 109
           +APE+      E  + +   + R++GNI+ IGEL K KM+ E I+H  V +LL+N     
Sbjct: 123 SAPEERTRLHDELEEAKDKARRRSIGNIKFIGELFKLKMLTEAIMHDCVVKLLKN----- 177

Query: 110 PAEENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKELTTNSQLVPRLRFMIHDVLDL 169
             EE++E +C+   TIGK LD   K++   D YF++++++    +   R+RFM+ DV+DL
Sbjct: 178 HDEESLECLCRLLTTIGKDLDFE-KAKPRMDQYFNQMEKIVKERKTSSRIRFMLQDVIDL 236

Query: 170 RANNWV 175
           R  NWV
Sbjct: 237 RLCNWV 242
>d1ug3a1 a.118.1.14 (A:1235-1427) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]} Length = 193 Back     information, alignment and structure
>d1uw4b_ a.118.1.14 (B:) Regulator of nonsense transcripts 2, UPF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 248 Back     information, alignment and structure
>d2nsza1 a.118.1.14 (A:322-450) Programmed cell death 4, PDCD4 {Mouse (Mus musculus) [TaxId: 10090]} Length = 129 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query526
d1hu3a_243 Eukaryotic initiation factor eIF4G {Human (Homo sa 99.97
d1ug3a1193 Eukaryotic initiation factor eIF4G {Human (Homo sa 99.97
d2nsza1129 Programmed cell death 4, PDCD4 {Mouse (Mus musculu 99.97
d1uw4b_248 Regulator of nonsense transcripts 2, UPF2 {Human ( 99.93
d1h2vc1262 CBP80, 80KDa nuclear cap-binding protein {Human (H 98.1
>d1hu3a_ a.118.1.14 (A:) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: Eukaryotic initiation factor eIF4G
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.5e-32  Score=266.58  Aligned_cols=168  Identities=37%  Similarity=0.685  Sum_probs=128.8

Q ss_pred             CHHHHHHHHhhhCCCCCCCCCCCcchhHHHHHHHHHHHHHhcccccHHHHh-------cCCChHH----HHHHHHHHHHH
Q 009767            1 MYALLCSDLNEKLPPFPSDEPGGKDITFKRILLNHCQEAFEGADNTRAEIR-------QMTAPEQ----EMERMDQERLV   69 (526)
Q Consensus         1 mYA~LC~~L~~~~~~~~~~~~~~~~~~Fr~~LL~~cQ~eFe~~~~~~~~~~-------~~~~~e~----e~e~~~~~~~~   69 (526)
                      |||+||..|....+...  +.+++...||+.||++||++|++.........       ....++.    ..|.++.+.+.
T Consensus        65 ~YA~Lc~~l~~~~~~~~--~~~~~~~~F~~~Ll~~~q~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~  142 (243)
T d1hu3a_          65 AYANMCRCLVTLKVPMA--DKPGNTVNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAASAPEERTRLHDELEEAKDKA  142 (243)
T ss_dssp             HHHHHHHHHTTCCCC-----------CHHHHHHHHHHHHHHHHTC------------------------------CCSSH
T ss_pred             HHHHHHHHHHHhcCccc--cccccchHHHHHHHHHHHHHHHHhhhhhhhhHhhhcccccccchHHHHHHHHHHHHHHHHH
Confidence            69999999999877653  23345688999999999999998754321111       1111111    01222233467


Q ss_pred             HhhhhhhHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHHHhhhhhcCCcchhhHHHHHHHHHHH
Q 009767           70 KLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLENDGKTCPAEENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKEL  149 (526)
Q Consensus        70 K~r~lGnirFIGELfk~~~l~e~ii~~ci~~Ll~~~~~~~p~ee~iE~lc~LL~tiG~~Ld~~~~~~~~~d~~f~~l~~l  149 (526)
                      |+|++|+|+||||||+.++++.++|+.||..|+.+     |+|++|||+|.||++||+.|+. ..++..||.||++|+.+
T Consensus       143 k~~~~g~i~figeLy~~~~v~~~~i~~~l~~Ll~~-----~~e~~ie~l~~lL~~~G~~L~~-~~~~~~~~~~~~~l~~~  216 (243)
T d1hu3a_         143 RRRSIGNIKFIGELFKLKMLTEAIMHDCVVKLLKN-----HDEESLECLCRLLTTIGKDLDF-EKAKPRMDQYFNQMEKI  216 (243)
T ss_dssp             HHHHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHS-----CSHHHHHHHHHHHHHHHHHHCC-TTTHHHHHHHHHHHHHH
T ss_pred             HHHhcchHHHHHHHHccccchHHHHHHHHHHhcCC-----CCHHHHHHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHH
Confidence            88999999999999999999999999999999987     6999999999999999999986 44567899999999999


Q ss_pred             HhCCCCChhHHHHHHHHHHHHhCCCCc
Q 009767          150 TTNSQLVPRLRFMIHDVLDLRANNWVP  176 (526)
Q Consensus       150 ~~~~~ls~Rirfmi~dvidlR~~~W~~  176 (526)
                      ..++++|+||||||+||+|+|++||++
T Consensus       217 ~~~~~~s~Rirfml~~l~elR~~~W~s  243 (243)
T d1hu3a_         217 VKERKTSSRIRFMLQDVIDLRLCNWVS  243 (243)
T ss_dssp             HHSCSSCHHHHHHHHHHHHHHHTTTCC
T ss_pred             HhcCCCCHHHHHHHHHHHHHHHcCCCC
Confidence            999999999999999999999999984
>d1ug3a1 a.118.1.14 (A:1235-1427) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2nsza1 a.118.1.14 (A:322-450) Programmed cell death 4, PDCD4 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1uw4b_ a.118.1.14 (B:) Regulator of nonsense transcripts 2, UPF2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1h2vc1 a.118.1.14 (C:29-290) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure