Citrus Sinensis ID: 009811

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-----
MNSVFSEQILAEKLSKLNCTQQCIETLSHWCIFHRSKAELVVATWDKQFHSSQLVQKVPLLYLANDILQNSKRKGNEFVTEFWKVLPAALKDVVENGDDSGKNVVSRLVNIWDERRVFGSRARGVKDVMLGGEVPPPLEFSGKKRSRPVKIVKRDSRSIRTKLTVGGAAEKIVSAYHLVLCEQLSEEEEMARCKSVVHRVKKMEKDVDIACTNAKDPKRKTLSKELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQMQVAQAQAEEACNMRKRLNDEDYVSKPSTTATLSADMNAKGAQTPKRTAAAIAAEVADKLTASTSSQMIMHSVLSTFAAQEAKNAGLVKASTASNSFPPIPANSVTESIPKPEKQTAVSDPNMFLPAQSLSTPPNQSYQTVLVPQPTMQNQARSTQPQYHMLPNSSSQQYLQPSGGIMTPYGYGSIPPMPAGPPPPHMVSPMVPLTQQQQLPLAQQPAPSNQQLTMLTQQPPGPPSFRPLQPPGMAFYGQPPHS
ccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccccHHHHHHHHHccccccccccccccccccccHHcccccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
ccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccccccccccccccccccccccccccccHHcccccHHHHHHHHccHHHHHHHHHHHHHHcHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHccccccHHHHHHHHHccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccc
MNSVFSEQILAEKLSKLNCTQQCIETLSHWCIFHRSKAELVVATWdkqfhssqlvqkvpLLYLANDILqnskrkgnEFVTEFWKVLPAALKDVVENGDDSGKNVVSRLVNIWderrvfgsrargvkdvmlggevppplefsgkkrsrpvkivkrdsrsirtkltvGGAAEKIVSAYHLVLCEQLSEEEEMARCKSVVHRVKKMEKDVDIactnakdpkrkTLSKELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQMQVAQAQAEEACNMRKrlndedyvskpsttatlsadmnakgaqtpkRTAAAIAAEVADKLTASTSSQMIMHSVLSTFAAQEAKNAglvkastasnsfppipansvtesipkpekqtavsdpnmflpaqslstppnqsyqtvlvpqptmqnqarstqpqyhmlpnsssqqylqpsggimtpygygsippmpagpppphmvspmvpltqqqqlplaqqpapsnqqltmltqqppgppsfrplqppgmafygqpphs
MNSVFSEQILAEKLSKLNCTQQCIETLSHWCIFHRSKAELVVATWDKQFHSSQLVQKVPLLYLANDILQNSKRKGNEFVTEFWKVLPAALKDvvengddsgknvvsrlvniwderrvfgsrargvkdvmlggevppplefsgkkrsrpvkivkrdsrsirtkltvggaaeKIVSAYHLVLCEQLSEEEEMARCKSVVHrvkkmekdvdiactnakdpkrktlSKELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQMQVAQAQAEEACNMRKRLNDEDYVSKPSttatlsadmnakGAQTPKRTAAAIAAEVADKLTASTSSQMIMHSVLSTFAAQEAKNAGLVKASTASNSFPPIPANSVTESIPKPEKQTAVSDPNMFLPAQSLSTPPNQSYQTVLVPQPTMQNQARSTQPQYHMLPNSSSQQYLQPSGGIMTPYGYGSIPPMPAGPPPPHMVSPMVPLTQQQQLPLAQQPAPSNQQLTMLTQQPPGPPSFRPLQPPGMAFYGQPPHS
MNSVFSEQILAEKLSKLNCTQQCIETLSHWCIFHRSKAELVVATWDKQFHSSQLVQKVPLLYLANDILQNSKRKGNEFVTEFWKVLPAALKDVVENGDDSGKNVVSRLVNIWDERRVFGSRARGVKDVMLGGEVPPPLEFSGKKRSRPVKIVKRDSRSIRTKLTVGGAAEKIVSAYHLVLCEQLSEEEEMARCKSVVHRVKKMEKDVDIACTNAKDPKRKTLSKELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTqmqvaqaqaeeaCNMRKRLNDEDYVSKPSTTATLSADMNAKGAQTPKRTAAAIAAEVADKLTASTSSQMIMHSVLSTFAAQEAKNAGLVKASTASNSFPPIPANSVTESIPKPEKQTAVSDPNMFLPAQSLSTPPNQSYQTVLVPQPTMQNQARSTQPQYHMLPNSSSQQYLQPSGGIMTPYGYGSIppmpagpppphmvspmvpltqqqqlplaqqpapsnqqlTMLTQQPPGPPSFRPLQPPGMAFYGQPPHS
********ILAEKLSKLNCTQQCIETLSHWCIFHRSKAELVVATWDKQFHSSQLVQKVPLLYLANDILQNSKRKGNEFVTEFWKVLPAALKDVVENGDDSGKNVVSRLVNIWDERRVFGSRARGVKDVMLG***************************IRTKLTVGGAAEKIVSAYHLVLCEQLSE***MARCKSVVHRVK*****VDIA***************************************************************************************************************************************************************************************************************************************************************************************************************************
***VFSEQILAEKLSKLNCTQQCIETLSHWCIFHRSKAELVVATWDKQFHSSQLVQKVPLLYLANDILQNSKRKGNEFVTEFWKVLPAALKDVVEN******NVVSRLVNIWDERRVFGSRARGVKDVM************************************************************************************************LEEEENMLKQCIEKLKSVEAS*VALVSQLKEAL***************************************************************************************************************************************************************************************************************************************************************************
MNSVFSEQILAEKLSKLNCTQQCIETLSHWCIFHRSKAELVVATWDKQFHSSQLVQKVPLLYLANDILQNSKRKGNEFVTEFWKVLPAALKDVVENGDDSGKNVVSRLVNIWDERRVFGSRARGVKDVMLGGEVPPPLEFSGKKRSRPVKIVKRDSRSIRTKLTVGGAAEKIVSAYHLVLCEQLS*********SVVHRVKKMEKDVDIACTNAKDPKRKTLSKELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQMQVAQAQAEEACNMRKRLNDEDYVSKPSTTATLSADM************AAIAAEVADKLTASTSSQMIMHSVLSTFAAQEAKNAGLVKASTASNSFPPIPANSVTESIPKPEKQTAVSDPNMFLPAQSLSTPPNQSYQTVLVPQP**********PQYHMLPNSSSQQYLQPSGGIMTPYGYGSIPPMPAGPPPPHMVSPMVPLTQQQQLPLAQQPAPSNQQLTMLTQQPPGPPSFRPLQPPGMAFYGQPPHS
****FSEQILAEKLSKLNCTQQCIETLSHWCIFHRSKAELVVATWDKQFHSSQLVQKVPLLYLANDILQNSKRKGNEFVTEFWKVLPAALKDVVENGDDSGKNVVSRLVNIWDERRVFGSRARGVKDVMLGG**********************************GAAEKIVSAYHLVLCEQLSEEEEMARCKSVVHRVKKMEKDVDIACTNAKDPKRKTLSKELEEEENMLKQCIEKLKSVEASRVALVSQLKEALHEQESELENVRTQMQVAQAQAEEACNMRKRLN******************************************************************************************************************************************QYHMLPNSSSQQYLQPSGGIMTPYGYGSIPPMPAGPPPPHMVSPMVPLTQQ***********************PGPPSFRPLQPPGMAFYG*****
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MNSVFSEQILAEKLSKLNCTQQCIETLSHWCIFHRSKAELVVATWDKQFHSSQLVQKVPLLYLANDILQNSKRKGNEFVTEFWKVLPAALKDVVENGDDSGKNVVSRLVNIWDERRVFGSRARGVKDVMLGGEVPPPLEFSGKKRSRPVKIVKRDSRSIRTKLTVGGAAEKIVSAYHLVLCEQLSEEEEMARCKSVVHRVKKMEKDVDIACTNAKDPKxxxxxxxxxxxxxxxxxxxxxxxxxxxxRVALxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxDYVSKPSTTATLSADMNAKGAQTPKRTAAAIAAEVADKLTASTSSQMIMHSVLSTFAAQEAKNAGLVKASTASNSFPPIPANSVTESIPKPEKQTAVSDPNMFLPAQSLSTPPNQSYQTVLVPQPTMQNQARSTQPQYHMLPNSSSQQYLQPSGGIMTPYGYGSIPPMPAGPPPPHMVSPMVPLTQQQQLPLAQQPAPSNQQLTMLTQQPPGPPSFRPLQPPGMAFYGQPPHS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query525 2.2.26 [Sep-21-2011]
Q9CSU0326 Regulation of nuclear pre yes no 0.257 0.414 0.433 1e-24
Q9NQG5326 Regulation of nuclear pre yes no 0.257 0.414 0.433 2e-24
Q5ZM30268 Regulation of nuclear pre no no 0.220 0.432 0.439 9e-22
Q5R8Y3312 Regulation of nuclear pre no no 0.220 0.371 0.431 1e-21
Q96P16312 Regulation of nuclear pre no no 0.220 0.371 0.431 1e-21
Q0P5J9312 Regulation of nuclear pre no no 0.220 0.371 0.431 1e-21
Q8VDS4312 Regulation of nuclear pre no no 0.220 0.371 0.431 1e-21
Q5VT52 1461 Regulation of nuclear pre no no 0.52 0.186 0.249 3e-13
A8WLG6311 CID domain-containing pro N/A no 0.285 0.482 0.269 2e-12
P34281315 CID domain-containing pro yes no 0.247 0.412 0.293 2e-12
>sp|Q9CSU0|RPR1B_MOUSE Regulation of nuclear pre-mRNA domain-containing protein 1B OS=Mus musculus GN=Rprd1b PE=1 SV=2 Back     alignment and function desciption
 Score =  114 bits (286), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 59/136 (43%), Positives = 82/136 (60%), Gaps = 1/136 (0%)

Query: 3   SVFSEQILAEKLSKLNCTQQCIETLSHWCIFHRSKAELVVATWDKQFHSSQLVQKVPLLY 62
           S FSE  L +KLS+L+ +QQ ++TLS W I HR  A  +V+ W ++   ++  +K+  LY
Sbjct: 2   SSFSESALEKKLSELSNSQQSVQTLSLWLIHHRKHAGPIVSVWHRELRKAKSNRKLTFLY 61

Query: 63  LANDILQNSKRKGNEFVTEFWKVLPAALKDVVENGDDSGKNVVSRLVNIWDERRVFGSR- 121
           LAND++QNSKRKG EF  EF  VL  A   V    D+  K  + RL+NIW ER V+G   
Sbjct: 62  LANDVIQNSKRKGPEFTREFESVLVDAFSHVAREADEGCKKPLERLLNIWQERSVYGGEF 121

Query: 122 ARGVKDVMLGGEVPPP 137
            + +K  M   + PPP
Sbjct: 122 IQQLKLSMEDSKSPPP 137
Interacts with phosphorylated C-terminal heptapeptide repeat domain (CTD) of the largest RNA polymerase II subunit POLR2A, and participates in dephosphorylation of the CTD. Transcriptional regulator which enhances expression of CCND1. Promotes binding of RNA polymerase II to the CCDN1 promoter and to the termination region before the poly-A site but decreases its binding after the poly-A site. Prevents RNA polymerase II from reading through the 3' end termination site and may allow it to be recruited back to the promoter through promotion of the formation of a chromatin loop. Also enhances the transcription of a number of other cell cycle-related genes including CDK2, CDK4, CDK6 and cyclin-E but not CDKN1A, CDKN1B or cyclin-A. Promotes cell proliferation.
Mus musculus (taxid: 10090)
>sp|Q9NQG5|RPR1B_HUMAN Regulation of nuclear pre-mRNA domain-containing protein 1B OS=Homo sapiens GN=RPRD1B PE=1 SV=1 Back     alignment and function description
>sp|Q5ZM30|RPR1A_CHICK Regulation of nuclear pre-mRNA domain-containing protein 1A OS=Gallus gallus GN=RPRD1A PE=2 SV=1 Back     alignment and function description
>sp|Q5R8Y3|RPR1A_PONAB Regulation of nuclear pre-mRNA domain-containing protein 1A OS=Pongo abelii GN=RPRD1A PE=2 SV=1 Back     alignment and function description
>sp|Q96P16|RPR1A_HUMAN Regulation of nuclear pre-mRNA domain-containing protein 1A OS=Homo sapiens GN=RPRD1A PE=1 SV=1 Back     alignment and function description
>sp|Q0P5J9|RPR1A_BOVIN Regulation of nuclear pre-mRNA domain-containing protein 1A OS=Bos taurus GN=RPRD1A PE=2 SV=2 Back     alignment and function description
>sp|Q8VDS4|RPR1A_MOUSE Regulation of nuclear pre-mRNA domain-containing protein 1A OS=Mus musculus GN=Rprd1a PE=2 SV=1 Back     alignment and function description
>sp|Q5VT52|RPRD2_HUMAN Regulation of nuclear pre-mRNA domain-containing protein 2 OS=Homo sapiens GN=RPRD2 PE=1 SV=1 Back     alignment and function description
>sp|A8WLG6|CIDS1_CAEBR CID domain-containing protein 1 OS=Caenorhabditis briggsae GN=cids-1 PE=4 SV=1 Back     alignment and function description
>sp|P34281|CIDS1_CAEEL CID domain-containing protein 1 OS=Caenorhabditis elegans GN=cids-1 PE=4 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query525
225438617524 PREDICTED: regulation of nuclear pre-mRN 0.984 0.986 0.747 0.0
255576198514 conserved hypothetical protein [Ricinus 0.96 0.980 0.721 0.0
296082470473 unnamed protein product [Vitis vinifera] 0.889 0.987 0.701 0.0
356528507509 PREDICTED: uncharacterized protein LOC10 0.965 0.996 0.676 0.0
224093802485 predicted protein [Populus trichocarpa] 0.921 0.997 0.665 0.0
356512728509 PREDICTED: uncharacterized protein LOC10 0.965 0.996 0.671 0.0
356538025552 PREDICTED: uncharacterized protein LOC10 0.918 0.873 0.651 0.0
224081202529 predicted protein [Populus trichocarpa] 0.975 0.967 0.630 1e-164
224081196453 predicted protein [Populus trichocarpa] 0.860 0.997 0.606 1e-158
357463461533 Regulation of nuclear pre-mRNA domain-co 0.935 0.921 0.567 1e-151
>gi|225438617|ref|XP_002276726.1| PREDICTED: regulation of nuclear pre-mRNA domain-containing protein 2-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  773 bits (1995), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/531 (74%), Positives = 448/531 (84%), Gaps = 14/531 (2%)

Query: 1   MNSVFSEQILAEKLSKLNCTQQCIETLSHWCIFHRSKAELVVATWDKQFHSSQLVQKVPL 60
           MNSVFSEQILA+KLSKLN TQQCIETLSHWCIFHRSKAELVVATWDKQFHSS++ QKVPL
Sbjct: 1   MNSVFSEQILADKLSKLNSTQQCIETLSHWCIFHRSKAELVVATWDKQFHSSEMAQKVPL 60

Query: 61  LYLANDILQNSKRKGNEFVTEFWKVLPAALKDVVENGDDSGKNVVSRLVNIWDERRVFGS 120
           LYLANDILQNSKRKGNEFV+EFWKVLPAALK VVE GDD GKNVVSRLV+IW+ERRVFGS
Sbjct: 61  LYLANDILQNSKRKGNEFVSEFWKVLPAALKAVVEKGDDHGKNVVSRLVHIWEERRVFGS 120

Query: 121 RARGVKDVMLGGEVPPPLEFSGKKRSRPVKIVKRDSRSIRTKLTVGGAAEKIVSAYHLVL 180
           RA+ + DVMLG E+PPPLEFS KKRSR VKIV+RD RSIRTKL++GG+AEKIVSA+H+VL
Sbjct: 121 RAQSLNDVMLGEELPPPLEFS-KKRSRSVKIVRRDMRSIRTKLSIGGSAEKIVSAFHVVL 179

Query: 181 CEQLSEEEEMARCKSVVHRVKKMEKDVDIACTNAKDPKRKTLSKELEEEENMLKQCIEKL 240
            +Q +E+ EM +CKS VH V+KME+DVD AC NAKDPKRKTL+KELE+EE++LKQCIEKL
Sbjct: 180 SDQSTEDAEMNKCKSAVHHVRKMERDVDTACLNAKDPKRKTLAKELEDEEDVLKQCIEKL 239

Query: 241 KSVEASRVALVSQLKEALHEQESELENVRTQMQVAQAQAEEACNMRKRLNDEDY-VSKPS 299
           K VEA+R ALVSQLKEALHEQESELEN+RTQMQVA AQAEEA NMRKRLNDE++ V+KPS
Sbjct: 240 KLVEANREALVSQLKEALHEQESELENIRTQMQVAHAQAEEASNMRKRLNDENFTVAKPS 299

Query: 300 TTATLSADMNAKGAQTPKRTAAAIAAEVADKLTASTSSQMIMHSVLSTFAAQEAKNAGLV 359
             AT   + NAK  Q  KRTAA IAAEVADKLTAS+SSQ+IM SVLSTFAA+EAKNAGL 
Sbjct: 300 -HATSPLEANAKVGQASKRTAADIAAEVADKLTASSSSQLIMTSVLSTFAAEEAKNAGLT 358

Query: 360 KASTASNSFPPIPANSVTESIPKPEKQTAVSDPNMFLPAQSLSTPPNQSYQTVLVPQPTM 419
           K ST SNSF P+P+NS      KPE    VSDPN+F+  Q+L+ PPNQ YQ+V++  PTM
Sbjct: 359 KTSTVSNSFTPMPSNS------KPENSMPVSDPNVFMSTQTLTAPPNQPYQSVIIAPPTM 412

Query: 420 QNQARSTQPQYHMLPNSSSQQYLQPSGGIMTPYGYGSIPPMPAGPPPP----HMVSPMVP 475
           Q+Q  ++Q QYHMLPN  SQQYLQPSGGIM PYGYGSIPP+P GPPPP    HMV+PM P
Sbjct: 413 QSQTPTSQTQYHMLPNPPSQQYLQPSGGIMNPYGYGSIPPLPPGPPPPPSTLHMVNPMAP 472

Query: 476 LTQQQQLPLAQQPAPSNQQLTM-LTQQPPGPPSFRPLQPPGMAFYGQPPHS 525
           L QQQ +PL QQPA   +   M LTQQPP PPSFRPLQ PGM +YG P HS
Sbjct: 473 LPQQQSIPLVQQPALLTRHQPMPLTQQPPAPPSFRPLQLPGMVYYGLPHHS 523

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255576198|ref|XP_002528993.1| conserved hypothetical protein [Ricinus communis] gi|223531583|gb|EEF33412.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|296082470|emb|CBI21475.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356528507|ref|XP_003532844.1| PREDICTED: uncharacterized protein LOC100795054 [Glycine max] Back     alignment and taxonomy information
>gi|224093802|ref|XP_002309998.1| predicted protein [Populus trichocarpa] gi|222852901|gb|EEE90448.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356512728|ref|XP_003525068.1| PREDICTED: uncharacterized protein LOC100802429 [Glycine max] Back     alignment and taxonomy information
>gi|356538025|ref|XP_003537505.1| PREDICTED: uncharacterized protein LOC100815709 [Glycine max] Back     alignment and taxonomy information
>gi|224081202|ref|XP_002306332.1| predicted protein [Populus trichocarpa] gi|222855781|gb|EEE93328.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224081196|ref|XP_002306330.1| predicted protein [Populus trichocarpa] gi|222855779|gb|EEE93326.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357463461|ref|XP_003602012.1| Regulation of nuclear pre-mRNA domain-containing protein 1B [Medicago truncatula] gi|355491060|gb|AES72263.1| Regulation of nuclear pre-mRNA domain-containing protein 1B [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query525
TAIR|locus:2184113469 AT5G10060 "AT5G10060" [Arabido 0.847 0.948 0.550 8.4e-121
TAIR|locus:2171795439 AT5G65180 "AT5G65180" [Arabido 0.794 0.949 0.545 4.2e-115
TAIR|locus:2091990513 AT3G26990 "AT3G26990" [Arabido 0.822 0.842 0.350 7.8e-62
MGI|MGI:1917720326 Rprd1b "regulation of nuclear 0.497 0.800 0.322 6.9e-26
UNIPROTKB|A6QLW3326 RPRD1B "RPRD1B protein" [Bos t 0.497 0.800 0.319 1.5e-25
UNIPROTKB|E2RRZ8326 RPRD1B "Uncharacterized protei 0.497 0.800 0.319 1.5e-25
UNIPROTKB|Q9NQG5326 RPRD1B "Regulation of nuclear 0.497 0.800 0.319 1.5e-25
UNIPROTKB|F2Z5H3326 RPRD1B "Uncharacterized protei 0.497 0.800 0.319 1.5e-25
RGD|1304782224 Rprd1b "regulation of nuclear 0.270 0.633 0.426 1.6e-24
UNIPROTKB|Q5F4B4325 CREPT "Cell-cycle related and 0.497 0.803 0.313 3.5e-24
TAIR|locus:2184113 AT5G10060 "AT5G10060" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1147 (408.8 bits), Expect = 8.4e-121, Sum P(2) = 8.4e-121
 Identities = 262/476 (55%), Positives = 326/476 (68%)

Query:     1 MNSVFSEQILAEKLSKLNCTQQCIETLSHWCIFHRSKAELVVATWDKQFHSSQLVQKVPL 60
             M+SVFS+QIL +KL+KLN +QQ IETLSHWCIF+RSKAEL+V TW+KQFHS+++ QKVPL
Sbjct:     1 MSSVFSDQILIDKLAKLNSSQQSIETLSHWCIFNRSKAELIVTTWEKQFHSTEMDQKVPL 60

Query:    61 LYLANDILQNSKRKGNEFVTEFWKVLPAALKDVVENGDDSGKNVVSRLVNIWDERRVFGS 120
             LYLANDILQNSKR+GNEFV EFW VLP ALKD+V  GDD+GK+ V+R++ IW+ERRVFGS
Sbjct:    61 LYLANDILQNSKRQGNEFVQEFWNVLPKALKDIVSQGDDNGKSAVARVIKIWEERRVFGS 120

Query:   121 RARGVKDVMLGGEVPPPLEFSGKKRSRPVKIVKRDSRSIRTKL-TVGGAAEKIVSAYHLV 179
             R++ +KDVMLG +VP PL+ S KKR R  K  KR+S+S RTKL + GG AEKI SAYHLV
Sbjct:   121 RSKSLKDVMLGEDVPLPLDIS-KKRPRGSKSSKRESKSSRTKLASSGGVAEKIASAYHLV 179

Query:   180 LCEQLSEEEEMARCKSVVHRVKKMEKDVDIACTNAKD-PKRKTLSKELEEEENMLKQCIE 238
             + E  +EE EM +CKS V R++KMEKDV+ AC+ AKD PKRK+L+KELEEEE +L+QCIE
Sbjct:   180 VAENSNEEAEMNKCKSAVKRIRKMEKDVEEACSTAKDNPKRKSLAKELEEEEYLLRQCIE 239

Query:   239 KLKSVEASRVALVSQLKEALHEQESELENVRTXXXXXXXXXXXXCNMRKRLNDEDYVSKP 298
             KLKSV+ SR +LV+QLK+AL EQESEL+N++              NM+KRLNDEDY SK 
Sbjct:   240 KLKSVQGSRSSLVNQLKDALREQESELDNLKAQIQVAKEQTEEAQNMQKRLNDEDYTSKQ 299

Query:   299 STTATLSADMN--AKGAQTPKRTAAAIAAEVADKLTASTSSQMIMHSVLSTFAAQEAKNA 356
             +T AT   + N   K  Q  K T A+IAA     LTASTSS MIM SVLS+FAA+  K +
Sbjct:   300 TTAATTITETNDNTKSGQASKMTPASIAA----MLTASTSSHMIMQSVLSSFAAEATKTS 355

Query:   357 GLVKA-STA--SNSFPPIPA-NSVTESIPKPEKQTAVSDPNMFLPAQSLSTPP-NQSYQ- 410
             GL K+ ST   S++    P+ N+     P  + Q  V  PN   P Q L  P  N  Y  
Sbjct:   356 GLSKSESTVPVSDTNASFPSYNNSQNQTPTTQGQYHVI-PNP-PPPQFLKPPVMNNPYAF 413

Query:   411 -TV------LVPQPTMQNQARSTQPQYHMLPNSSSQQYLQPSGGIMTPYG---YGS 456
               +      L P P   +   + QPQ   +P S+S Q  Q  G    P G   YG+
Sbjct:   414 GNIPLMPPGLPPPPPPPHLIGNQQPQ---IPQSNSAQQSQ-QGPTFQPPGIMYYGA 465
GO:0003674 "molecular_function" evidence=ND
GO:0005576 "extracellular region" evidence=ISM
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2171795 AT5G65180 "AT5G65180" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2091990 AT3G26990 "AT3G26990" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
MGI|MGI:1917720 Rprd1b "regulation of nuclear pre-mRNA domain containing 1B" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|A6QLW3 RPRD1B "RPRD1B protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RRZ8 RPRD1B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q9NQG5 RPRD1B "Regulation of nuclear pre-mRNA domain-containing protein 1B" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F2Z5H3 RPRD1B "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|1304782 Rprd1b "regulation of nuclear pre-mRNA domain containing 1B" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q5F4B4 CREPT "Cell-cycle related and expression-elevated protein in tumor" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00019430001
SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (469 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query525
smart00582124 smart00582, RPR, domain present in proteins, which 2e-37
cd03562114 cd03562, CID, CID (CTD-Interacting Domain) domain 4e-33
pfam0481864 pfam04818, CTD_bind, RNA polymerase II-binding dom 4e-25
pfam09770 804 pfam09770, PAT1, Topoisomerase II-associated prote 1e-07
pfam09770 804 pfam09770, PAT1, Topoisomerase II-associated prote 3e-06
PHA03247 3151 PHA03247, PHA03247, large tegument protein UL36; P 4e-06
pfam09770 804 pfam09770, PAT1, Topoisomerase II-associated prote 2e-05
pfam03154 979 pfam03154, Atrophin-1, Atrophin-1 family 1e-04
smart00818165 smart00818, Amelogenin, Amelogenins, cell adhesion 7e-04
TIGR01628562 TIGR01628, PABP-1234, polyadenylate binding protei 8e-04
PRK10263 1355 PRK10263, PRK10263, DNA translocase FtsK; Provisio 9e-04
PRK10263 1355 PRK10263, PRK10263, DNA translocase FtsK; Provisio 0.002
pfam09606 768 pfam09606, Med15, ARC105 or Med15 subunit of Media 0.002
COG5185622 COG5185, HEC1, Protein involved in chromosome segr 0.002
pfam03153 332 pfam03153, TFIIA, Transcription factor IIA, alpha/ 0.002
>gnl|CDD|214731 smart00582, RPR, domain present in proteins, which are involved in regulation of nuclear pre-mRNA Back     alignment and domain information 
 Score =  133 bits (337), Expect = 2e-37
 Identities = 46/109 (42%), Positives = 68/109 (62%), Gaps = 1/109 (0%)

Query: 12  EKLSKLNCTQQCIETLSHWCIFHRSKAELVVATWDKQFHSSQLVQKVPLLYLANDILQNS 71
           +KL  LN +Q+ I+TL+ W I H S A+ +V  W+K    + + +K+PLLYL + I+QNS
Sbjct: 4   QKLESLNNSQESIQTLTKWAIEHASHAKEIVELWEKYIKKAPVPRKLPLLYLLDSIVQNS 63

Query: 72  KRK-GNEFVTEFWKVLPAALKDVVENGDDSGKNVVSRLVNIWDERRVFG 119
           KRK G+EF  E   V   AL+ V+    +  K  + RL+NIW+ER +F 
Sbjct: 64  KRKYGSEFGDELGPVFQDALRRVLGAAPEELKKKIRRLLNIWEERGIFP 112

Length = 124
>gnl|CDD|239621 cd03562, CID, CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1 Back     alignment and domain information
>gnl|CDD|218279 pfam04818, CTD_bind, RNA polymerase II-binding domain Back     alignment and domain information
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 Back     alignment and domain information
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 Back     alignment and domain information
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family Back     alignment and domain information
>gnl|CDD|197891 smart00818, Amelogenin, Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth Back     alignment and domain information
>gnl|CDD|130689 TIGR01628, PABP-1234, polyadenylate binding protein, human types 1, 2, 3, 4 family Back     alignment and domain information
>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional Back     alignment and domain information
>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional Back     alignment and domain information
>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal Back     alignment and domain information
>gnl|CDD|227512 COG5185, HEC1, Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 525
KOG2669325 consensus Regulator of nuclear mRNA [RNA processin 100.0
smart00582121 RPR domain present in proteins, which are involved 99.94
cd03562114 CID CID (CTD-Interacting Domain) domain family; CI 99.91
PF0481864 CTD_bind: RNA polymerase II-binding domain.; Inter 99.74
KOG0151877 consensus Predicted splicing regulator, contains R 99.64
PF12243139 CTK3: CTD kinase subunit gamma CTK3 99.45
KOG4368 757 consensus Predicted RNA binding protein, contains 99.41
KOG0132 894 consensus RNA polymerase II C-terminal domain-bind 98.67
KOG2071579 consensus mRNA cleavage and polyadenylation factor 97.68
KOG1924 1102 consensus RhoA GTPase effector DIA/Diaphanous [Sig 97.29
KOG1924 1102 consensus RhoA GTPase effector DIA/Diaphanous [Sig 96.98
cd09237356 V_ScBro1_like Protein-interacting V-domain of Sacc 94.66
KOG1923 830 consensus Rac1 GTPase effector FRL [Signal transdu 94.51
cd00197115 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil 94.44
KOG2236483 consensus Uncharacterized conserved protein [Funct 92.1
cd09234337 V_HD-PTP_like Protein-interacting V-domain of mamm 91.99
cd09235339 V_Alix Middle V-domain of mammalian Alix and relat 91.74
cd09236353 V_AnPalA_UmRIM20_like Protein-interacting V-domain 91.47
cd09238339 V_Alix_like_1 Protein-interacting V-domain of an u 90.61
cd08915342 V_Alix_like Protein-interacting V-domain of mammal 90.36
cd03561133 VHS VHS domain family; The VHS domain is present i 90.32
PF13949296 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HI 89.79
PF00790140 VHS: VHS domain; InterPro: IPR002014 The VHS domai 89.37
KOG1087470 consensus Cytosolic sorting protein GGA2/TOM1 [Int 88.5
KOG2893341 consensus Zn finger protein [General function pred 88.11
smart00288133 VHS Domain present in VPS-27, Hrs and STAM. Unpubl 87.8
KOG0132 894 consensus RNA polymerase II C-terminal domain-bind 85.73
cd03569142 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s 85.21
PRK10884206 SH3 domain-containing protein; Provisional 85.08
KOG0250 1074 consensus DNA repair protein RAD18 (SMC family pro 83.83
COG4026290 Uncharacterized protein containing TOPRIM domain, 81.65
KOG4672 487 consensus Uncharacterized conserved low complexity 81.43
cd03567139 VHS_GGA VHS domain family, GGA subfamily; GGA (Gol 80.83
KOG4849 498 consensus mRNA cleavage factor I subunit/CPSF subu 80.76
>KOG2669 consensus Regulator of nuclear mRNA [RNA processing and modification] Back     alignment and domain information 
Probab=100.00  E-value=1.3e-47  Score=390.18  Aligned_cols=289  Identities=39%  Similarity=0.585  Sum_probs=253.1

Q ss_pred             CCCCHHHHHHHHhhccCCHHHHHHHHHHHHhcccchHHHHHHHHHHHhcCCcCcccchhhhhHHHHHHhhhcChhhHHHH
Q 009811            3 SVFSEQILAEKLSKLNCTQQCIETLSHWCIFHRSKAELVVATWDKQFHSSQLVQKVPLLYLANDILQNSKRKGNEFVTEF   82 (525)
Q Consensus         3 ~~Fsed~l~~kL~~Ln~SQeSIqtlS~W~i~h~k~A~~IV~~W~k~l~ks~~~kKL~lLYLaNDVlQnSkrKg~eF~~aF   82 (525)
                      ++|+++.|.+||.+|++||+||+++|+|||+||++|+.||++|+++|+++..++||.||||||||||||+||+.+|+++|
T Consensus         2 ~~fsee~l~~kL~~L~~TQeSIqtlS~Wli~hkk~a~~IV~~Wl~~~~~~~~~~Kl~llYLaNDVvQnskrk~~ef~~ef   81 (325)
T KOG2669|consen    2 SAFSEEALEKKLAELSNTQESIQTLSLWLIHHKKHARLIVDVWLKELKKSSVNHKLTLLYLANDVVQNSKRKGPEFVDEF   81 (325)
T ss_pred             CcccHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccCCCceeeehhhhHHHHHHhhhcCchhHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCcchhhHHHHHHHHhhhccccchhh-HHHHHHhcCCCCCCCccccccCCCCcccccccCCccc-c
Q 009811           83 WKVLPAALKDVVENGDDSGKNVVSRLVNIWDERRVFGSRA-RGVKDVMLGGEVPPPLEFSGKKRSRPVKIVKRDSRSI-R  160 (525)
Q Consensus        83 ~~vLp~a~~~v~~~~d~~~kkkV~Rll~IWeeR~VF~~~i-~~Lke~llg~~~p~~l~~~~kk~~~~~k~~~~ds~~~-~  160 (525)
                      |+++..+|.+++...+.+++++|.|||+||++|+||++++ ..|++. ++...|++++.. ++..++.+..+++.... .
T Consensus        82 ~~v~~~a~~~i~~~~~~~~k~~l~Rl~nIw~eR~Vf~~~~~~~l~~~-l~~e~p~~~d~~-~~~~~~~~~~k~~~~~~~~  159 (325)
T KOG2669|consen   82 WPVVLKAFAHIVEETDVKCKKKLGRLINIWEERNVFSPESLVDLEES-LGAEKPPPLDEA-KKLPRGSKQIKLDEKGSKP  159 (325)
T ss_pred             HHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHhccCCHHHHHHHHHH-hcccCCcchhhh-hccccchHhhhhhhhccCC
Confidence            9999999999999889999999999999999999999995 666654 445555655555 55544444444443221 2


Q ss_pred             ccccCCCchhhhHHHHHHHhhhcccHHHHHHhhhhHHHHHHHhhhhhhhhhcCCC---CcchhHHHHHHHHHHHHHHHHH
Q 009811          161 TKLTVGGAAEKIVSAYHLVLCEQLSEEEEMARCKSVVHRVKKMEKDVDIACTNAK---DPKRKTLSKELEEEENMLKQCI  237 (525)
Q Consensus       161 ~k~~~g~~~ekivsa~q~l~~~~~~e~~~l~k~ksav~~~~~~eK~vd~acs~~~---d~r~~~l~keLee~e~~lke~I  237 (525)
                      .....|+..++|.+.++.+...+..+++.+..|+.+..++..+.+++.+.|.+++   ..+...+.+.+++.+..|++++
T Consensus       160 ~~~~~~~v~~~~~~~~~l~~a~~s~~~~~~k~~~~~~~~i~~~~~e~~e~~~~~k~~~~~~~e~~~k~lee~~~lL~e~~  239 (325)
T KOG2669|consen  160 GLSSLGEVHEKIDSSVELVRALQSLENAASKLDAVLEERIARLPQEVEEVSSLEKITLNSLIESLAKHLEEEEMLLREVN  239 (325)
T ss_pred             CCCCccccchhHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            2234467788888888777777777778888999999999999999999999875   2347899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 009811          238 EKLKSVEASRVALVSQLKEALHEQESELENVRTQMQVAQAQAEEACNMRKRLNDED  293 (525)
Q Consensus       238 eqLe~~~~aR~~Lis~LkeAL~~qE~~lE~vr~~~q~aq~~~~ra~~lr~~Ld~~~  293 (525)
                      ..|.+.+..|..+.+.|+++|.++++.++..+.++..+.-..+++.++++++.+..
T Consensus       240 ~~L~s~~~~~~~~~~~l~d~l~~q~~~l~~~~~~~~~~k~~l~~~~n~~~~~~~~~  295 (325)
T KOG2669|consen  240 PRLAAEEESRRQLVSMLRDALREQKEELNDEEPQLEEYKEKLDKAQNVQKELNDPL  295 (325)
T ss_pred             HHhcccchhhhhhHHHHHHHHhhhhccccccccCchhhhhhHHHHhhhhhhhcCCC
Confidence            99999999999999999999999999999999999999999999999999999874

>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA Back     alignment and domain information
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1 Back     alignment and domain information
>PF04818 CTD_bind: RNA polymerase II-binding domain Back     alignment and domain information
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only] Back     alignment and domain information
>PF12243 CTK3: CTD kinase subunit gamma CTK3 Back     alignment and domain information
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only] Back     alignment and domain information
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription] Back     alignment and domain information
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification] Back     alignment and domain information
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>cd09237 V_ScBro1_like Protein-interacting V-domain of Saccharomyces cerevisiae Bro1 and related domains Back     alignment and domain information
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain Back     alignment and domain information
>KOG2236 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>cd09234 V_HD-PTP_like Protein-interacting V-domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains Back     alignment and domain information
>cd09235 V_Alix Middle V-domain of mammalian Alix and related domains are dimerization and protein interaction modules Back     alignment and domain information
>cd09236 V_AnPalA_UmRIM20_like Protein-interacting V-domains of Aspergillus nidulans PalA/RIM20, Ustilago maydis RIM20, and related proteins Back     alignment and domain information
>cd09238 V_Alix_like_1 Protein-interacting V-domain of an uncharacterized family of the V_Alix_like superfamily Back     alignment and domain information
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains Back     alignment and domain information
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) Back     alignment and domain information
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A Back     alignment and domain information
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM Back     alignment and domain information
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2893 consensus Zn finger protein [General function prediction only] Back     alignment and domain information
>smart00288 VHS Domain present in VPS-27, Hrs and STAM Back     alignment and domain information
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription] Back     alignment and domain information
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting) Back     alignment and domain information
>PRK10884 SH3 domain-containing protein; Provisional Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only] Back     alignment and domain information
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown] Back     alignment and domain information
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins Back     alignment and domain information
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query525
4fu3_A135 Cid Of Human Rprd1b Length = 135 6e-24
4hfg_A135 Cid Of Human Rprd1b Length = 135 2e-23
4flb_A132 Cid Of Human Rprd2 Length = 132 7e-10
2km4_A142 Solution Structure Of Rtt103 Ctd Interacting Domain 6e-04
>pdb|4FU3|A Chain A, Cid Of Human Rprd1b Length = 135 Back     alignment and structure 
Iteration: 1

 Score =  108 bits (271), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 54/117 (46%), Positives = 74/117 (63%)
Query: 3   SVFSEQILAEKLSKLNCTQQCIETLSHWCIFHRSKAELVVATWDKQFHSSQLVQKVPLLY 62
           S FSE  L +KLS+L+ +QQ ++TLS W I HR  A  +V+ W ++   ++  +K+  LY
Sbjct: 2   SSFSESALEKKLSELSNSQQSVQTLSLWLIHHRKHAGPIVSVWHRELRKAKSNRKLTFLY 61
Query: 63  LANDILQNSKRKGNEFVTEFWKVLPAALKDVVENGDDSGKNVVSRLVNIWDERRVFG 119
           LAND++QNSKRKG EF  EF  VL  A   V    D+  K  + RL+NIW ER V+G
Sbjct: 62  LANDVIQNSKRKGPEFTREFESVLVDAFSHVAREADEGCKKPLERLLNIWQERSVYG 118
>pdb|4HFG|A Chain A, Cid Of Human Rprd1b Length = 135 Back     alignment and structure
>pdb|4FLB|A Chain A, Cid Of Human Rprd2 Length = 132 Back     alignment and structure
>pdb|2KM4|A Chain A, Solution Structure Of Rtt103 Ctd Interacting Domain Length = 142 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query525
4fld_A135 Regulation of nuclear PRE-mRNA domain-containing 1 3e-40
4flb_A132 Regulation of nuclear PRE-mRNA domain-containing; 5e-39
2km4_A142 Regulator of TY1 transposition protein 103; CTD-in 2e-37
3d9j_A145 RNA-binding protein 16; SCAF8, RNA polymerase II C 2e-24
1sz9_A144 PCF11 protein; RNA polymerase II CTD interacting d 8e-19
3clj_A157 Protein NRD1; CTD-interacting domain, nucleus, pho 9e-10
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 1e-08
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 1e-07
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 2e-07
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 5e-07
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 3e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-04
3pgw_B231 SM B; protein-RNA complex, U1 snRNA, SM fold, SM c 5e-05
3pgw_B231 SM B; protein-RNA complex, U1 snRNA, SM fold, SM c 8e-05
3pgw_B231 SM B; protein-RNA complex, U1 snRNA, SM fold, SM c 8e-04
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 8e-05
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 5e-04
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 5e-04
1deq_A390 Fibrinogen (alpha chain); coiled-coil, blood clott 1e-04
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 7e-04
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 8e-04
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens} Length = 132 Back     alignment and structure
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A* Length = 142 Back     alignment and structure
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A Length = 145 Back     alignment and structure
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X Length = 144 Back     alignment and structure
>3clj_A Protein NRD1; CTD-interacting domain, nucleus, phosphoprotein, RNA polymer binding protein, RNA binding protein; 2.10A {Saccharomyces cerevisiae} Length = 157 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231 Back     alignment and structure
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231 Back     alignment and structure
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query525
2km4_A142 Regulator of TY1 transposition protein 103; CTD-in 100.0
4fu3_A135 Regulation of nuclear PRE-mRNA domain-containing 1 100.0
4flb_A132 Regulation of nuclear PRE-mRNA domain-containing; 99.97
3d9j_A145 RNA-binding protein 16; SCAF8, RNA polymerase II C 99.93
1sz9_A144 PCF11 protein; RNA polymerase II CTD interacting d 99.92
3clj_A157 Protein NRD1; CTD-interacting domain, nucleus, pho 99.57
4fla_A152 Regulation of nuclear PRE-mRNA domain-containing 1 98.69
4fla_A152 Regulation of nuclear PRE-mRNA domain-containing 1 93.57
1x5b_A163 Signal transducing adaptor molecule 2; VHS domain, 88.41
3ldz_A140 STAM-1, signal transducing adapter molecule 1; ubi 86.0
1dvp_A220 HRS, hepatocyte growth factor-regulated tyrosine k 84.76
3mq9_A471 Bone marrow stromal antigen 2 fused to maltose-BI 84.49
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A* Back     alignment and structure
Probab=100.00  E-value=1.3e-35  Score=271.71  Aligned_cols=129  Identities=26%  Similarity=0.399  Sum_probs=123.1

Q ss_pred             CCCHHHHHHHHhhccCCHHHHHHHHHHHHhcccchHHHHHHHHHHHhcC--CcCcccchhhhhHHHHHHhhhc-ChhhHH
Q 009811            4 VFSEQILAEKLSKLNCTQQCIETLSHWCIFHRSKAELVVATWDKQFHSS--QLVQKVPLLYLANDILQNSKRK-GNEFVT   80 (525)
Q Consensus         4 ~Fsed~l~~kL~~Ln~SQeSIqtlS~W~i~h~k~A~~IV~~W~k~l~ks--~~~kKL~lLYLaNDVlQnSkrK-g~eF~~   80 (525)
                      +|+++.|+++|++||+||+||++++.|||+|+++++.||++|.++|.++  +.++||++|||+|||||||++| +.+|++
T Consensus         2 ~fs~~~l~~kL~~L~~sq~sIq~~s~W~l~h~~~a~~iv~~~~~~l~~~~~~~~kKL~~lYL~NDVlqnsk~k~~~~f~~   81 (142)
T 2km4_A            2 AFSSEQFTTKLNTLEDSQESISSASKWLLLQYRDAPKVAEMWKEYMLRPSVNTRRKLLGLYLMNHVVQQAKGQKIIQFQD   81 (142)
T ss_dssp             CCCHHHHHHHHHTCCSCHHHHHHHHHHHHTCGGGHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHGGGTCCHHHH
T ss_pred             CCCHHHHHHHHHhccccHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCCccceehhhhhHHHHHHHHhhcCchHHHH
Confidence            7999999999999999999999999999999999999999999999986  6799999999999999999986 589999


Q ss_pred             HHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhhccccchh-hHHHHHHhcCC
Q 009811           81 EFWKVLPAALKDVVENGDDSGKNVVSRLVNIWDERRVFGSR-ARGVKDVMLGG  132 (525)
Q Consensus        81 aF~~vLp~a~~~v~~~~d~~~kkkV~Rll~IWeeR~VF~~~-i~~Lke~llg~  132 (525)
                      +|+++|+++|.+++...|++.+++|.|||+||++|+||+.+ +..|++.+.|.
T Consensus        82 ~F~~~L~~~~~~~~~~~~~~~~~kv~rvl~iWeer~vf~~~~i~~L~~~l~~~  134 (142)
T 2km4_A           82 SFGKVAAEVLGRINQEFPRDLKKKLSRVVNILKERNIFSKQVVNDIERSLAAA  134 (142)
T ss_dssp             HHHHTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCcCHHHHHHHHHHHHhH
Confidence            99999999999999888999999999999999999999999 79999988763
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A* Back     alignment and structure
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens} Back     alignment and structure
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A Back     alignment and structure
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X Back     alignment and structure
>3clj_A Protein NRD1; CTD-interacting domain, nucleus, phosphoprotein, RNA polymer binding protein, RNA binding protein; 2.10A {Saccharomyces cerevisiae} Back     alignment and structure
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens} Back     alignment and structure
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens} Back     alignment and structure
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B Back     alignment and structure
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0 Back     alignment and structure
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1 Back     alignment and structure
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 525
d1szaa_144 a.118.9.4 (A:) PCF11 protein {Baker's yeast (Sacch 5e-23
>d1szaa_ a.118.9.4 (A:) PCF11 protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 144 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: RPR domain (SMART 00582 )
domain: PCF11 protein
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 92.8 bits (230), Expect = 5e-23
 Identities = 21/120 (17%), Positives = 43/120 (35%), Gaps = 7/120 (5%)

Query: 5   FSEQILAE---KLSKLNC-TQQCIETLSHWCIFHRSKAELVVATWDKQFHSSQLVQKVPL 60
            +E I+ +    L +L   ++  I TL+     + S A+  V   + +       QK+  
Sbjct: 4   DTEVIVKDFNSILEELTFNSRPIITTLTKLAEENISCAQYFVDAIESRIEKCMPKQKLYA 63

Query: 61  LYLANDILQNSKRKGNEFVTEFWKVLPAALKDVVENGDDSGKNVVSRLVNIWDERRVFGS 120
            Y  + I +N       +   F + L    K      D++ +  +  +  +W      G 
Sbjct: 64  FYALDSICKNVGS---PYTIYFSRNLFNLYKRTYLLVDNTTRTKLINMFKLWLNPNDTGL 120

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query525
d1szaa_144 PCF11 protein {Baker's yeast (Saccharomyces cerevi 99.92
d1dvpa1145 Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7 87.86
d1mhqa_143 ADP-ribosylation factor binding protein Gga2 {Huma 84.04
>d1szaa_ a.118.9.4 (A:) PCF11 protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: RPR domain (SMART 00582 )
domain: PCF11 protein
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=2.1e-25  Score=202.39  Aligned_cols=125  Identities=15%  Similarity=0.200  Sum_probs=116.0

Q ss_pred             CCHHHHHHHHhhcc-CCHHHHHHHHHHHHhcccchHHHHHHHHHHHhcCCcCcccchhhhhHHHHHHhhhcChhhHHHHH
Q 009811            5 FSEQILAEKLSKLN-CTQQCIETLSHWCIFHRSKAELVVATWDKQFHSSQLVQKVPLLYLANDILQNSKRKGNEFVTEFW   83 (525)
Q Consensus         5 Fsed~l~~kL~~Ln-~SQeSIqtlS~W~i~h~k~A~~IV~~W~k~l~ks~~~kKL~lLYLaNDVlQnSkrKg~eF~~aF~   83 (525)
                      +..+.|..+|+.|+ +++..|++|+.||++|+++|..||++|.++|++++.++||++|||+|||+|||+   .+|..+|+
T Consensus         7 ~~~~~f~~~L~~L~~ns~~~I~~Lt~~a~~~~~~a~~Iv~~i~~~i~~~~~~~KL~~LYLiddI~~n~~---~~y~~~f~   83 (144)
T d1szaa_           7 VIVKDFNSILEELTFNSRPIITTLTKLAEENISCAQYFVDAIESRIEKCMPKQKLYAFYALDSICKNVG---SPYTIYFS   83 (144)
T ss_dssp             HHHHHHHHHHTTCSSCCHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTC---TTHHHHHH
T ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhhhhHHHHHHHhH---HHHHHHHH
Confidence            34567999999998 799999999999999999999999999999999999999999999999999984   57999999


Q ss_pred             HHHHHHHHHHhhcCCcchhhHHHHHHHHhhhcc-----ccchh-hHHHHHHhcCC
Q 009811           84 KVLPAALKDVVENGDDSGKNVVSRLVNIWDERR-----VFGSR-ARGVKDVMLGG  132 (525)
Q Consensus        84 ~vLp~a~~~v~~~~d~~~kkkV~Rll~IWeeR~-----VF~~~-i~~Lke~llg~  132 (525)
                      ++|+.+|.++|...|++.|++|.||++||++|+     ||+.+ ++.|+..|.+.
T Consensus        84 ~~l~~~f~~~y~~~~~~~r~kl~rll~iW~~r~~~~~~vFp~~~l~~ie~~L~~a  138 (144)
T d1szaa_          84 RNLFNLYKRTYLLVDNTTRTKLINMFKLWLNPNDTGLPLFEGSALEKIEQFLIKA  138 (144)
T ss_dssp             TTHHHHHHHHHTTSCHHHHHHHHHHHHHHSSGGGCSSCSSCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCcCCCCHHHHHHHHHHHHHh
Confidence            999999999999899999999999999999998     89999 68998877543
>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure