Citrus Sinensis ID: 009820

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520----
Protein Sequence
MEPILFLSSAKATLSPSFPLFLSYKSPFLEKPKLYVKSHLSASTTQVEKSQFWGKGLVLHKRFGSPGNVNKPHIPVAPVRASVKRRKELPFDNVIQRDKKLKLVSKIRKILVSQPDRIMSLKQLGRFRRDLGLTKKRRFIALLRKFPAVFEIIEEGVYSLRFKLTPEAERLYLEEVKVRNEMEDLLVTKLRKLLMMSLEKRILLEKIAHLKTDLGLPLEFRDTICHRYPQYFRVVATERGPALELTHWDPQLAVSAAELAAEENRIRELKEKDLIIDRPLKFNRVKLPKGLNLSKGETRRICQFRDMPYISPYSDFSGLRPGTPEKEKHACGIVHEILSLTVEKKTLVDHLTHFREEFRFSQQVRGMLIRHPDMFYVSLKGDRDSVFLREAYRDSQLIDKDRLLVIKEKFRALVSVPRFPKRGAPQKDDHYSDRTDEPEEGSGEDGEDWSIDDYMTDGQFDDVDDGNEDDWSDEDDDMPPDFDEDYGTVKIGENKSAKLVDSSVKKKEKVLAPVFPDGRPRERW
Secondary Structure (PSIPRED)
cccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcHHHHHHHHHHHHccccccccHHHHHHHcccccccccccHHHHHHHccccEEEcccccccccEEccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccEEEHHHHHHHHHHccccccccccccccccccEEEEEcccccEEEEcccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccHHHHHHHHHHccccEEEEEcccccEEEEEccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHEEEEcccccccccccEEEEccccccccccEEEccccccccccccccHHcccccccccccccccccccccccccHHEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccEcHHHHHHHHHHcccccccHHHHHHHHcccEEEEEcccccccEEcccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccHHHHHHHHHcccccEEEEEcccccEEEEEcccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHccccHHHHHHHHHcccEEEEEcccccEEEEEEEcccccccccccHHHHHHHHHHHHHHccccHHcccccccccccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccEEccccccccccEEEEEcccccccccc
Coil and Loop (DISEMBL)
MEPILFLSsakatlspsfplflsykspflekpklYVKSHLSASTTQVEKSQFWGKGLVLhkrfgspgnvnkphipvapvrasvkrrkelpfdnviqRDKKLKLVSKIRKILVSQPDRIMSLKQLGRFRRDLGLTKKRRFIALLRKFPAVFEIIEEGVYSLRFKLTPEAERLYLEEVKVRNEMEDLLVTKLRKLLMMSLEKRILLEKIAHLktdlglplefrdtichrypqYFRVVAtergpalelthwdpQLAVSAAELAAEENRIRELKekdliidrplkfnrvklpkglnlskgetrricqfrdmpyispysdfsglrpgtpekekhacGIVHEILSLTVEKKTLVDHLTHFREEFRFSQQVRGMlirhpdmfyvslkgdrdsvflreayrdsqlidkDRLLVIKEKFRALVsvprfpkrgapqkddhysdrtdepeegsgedgedwsiddymtdgqfddvddgneddwsdedddmppdfdedygtvkigenksaklvdsSVKKKEkvlapvfpdgrprerw
Flexible Loop (DISEMBL)
MEPILFLSsakatlspsfPLFLSYKSPFLEKPKLYVKSHLSASTTQVEKSQFWGKGLVLHKRFgspgnvnkphipvapvrasvkrrkelpfdnviqrdkklklvskirkilvsqpdrimslkqlgrfrrdlgltkkRRFIALLRKFPAVFEIIEEGVYSLRFKLTPEAERLYleevkvrnemEDLLVTKLRKLLMMSLEKRILLEKIAHLKTDLGLPLEFRDTICHRYPQYFRVVATERGPALELTHWDPQLAVSAAELAAEENRIrelkekdliidrplkfnrvklpkglnlskgetrricqfrdmPYISPYSDFSGLRPGTPEKEKHACGIVHEILSLTVEKKTLVDHLTHFREEFRFSQQVRGMLIRHPDMFYVSLKGDRDSVFLREayrdsqlidkdrllVIKEKFRalvsvprfpkrgapqkddhysdrtdepeegsgedgedwsiDDYMTDGQFDDVDDGNEDDWSDEDDDMPPDFDEDygtvkigenksaklvdssvkkkekvlapvfpdgrprerw
Low Complexity Region (SEG)
MEPILFLSSAKATLSPSFPLFLSYKSPFLEKPKLYVKSHLSASTTQVEKSQFWGKGLVLHKRFGSPGNVNKPHIPVAPVRASVKRRKELPFDNVIQRDKKLKLVSKIRKILVSQPDRIMSLKQLGRFRRDLGLTKKRRFIALLRKFPAVFEIIEEGVYSLRFKLTPEAERLYLEEVKVRNEMEDLLVTKLRKLLMMSLEKRILLEKIAHLKTDLGLPLEFRDTICHRYPQYFRVVATERGPALELTHWDPQLAVSaaelaaeeNRIRELKEKDLIIDRPLKFNRVKLPKGLNLSKGETRRICQFRDMPYISPYSDFSGLRPGTPEKEKHACGIVHEILSLTVEKKTLVDHLTHFREEFRFSQQVRGMLIRHPDMFYVSLKGDRDSVFLREAYRDSQLIDKDRLLVIKEKFRALVSVPRFPKRGAPQKDDHYSDRTdepeegsgedgedwsiddYMTdgqfddvddgneddwsdedddmppdfdedYGTVKIGENKSAKLVDSSVKKKEKVLAPVFPDGRPRERW
Disordered region (IsUnstruct)
************TLSPSFPLFLSYKSPFLEKPKLYVKSHLSASTTQVEKSQFWGKGLVLHKRFGSPGNVNKPHIPVAPVRASV***KELPFDNVIQRDKKLKLVSKIRKILVSQPDRIMSLKQLGRFRRDLGLTKKRRFIALLRKFPAVFEIIEEGVYSLRFKLTPEAERLYLEEVKVRNEMEDLLVTKLRKLLMMSLEKRILLEKIAHLKTDLGLPLEFRDTICHRYPQYFRVVATERGPALELTHWDPQLAVSAAELAAEENRIRELKEKDLIIDRPLKFNRVKLPKGLNLSKGETRRICQFRDMPYISPYSDFSGL********KHACGIVHEILSLTVEKKTLVDHLTHFREEFRFSQQVRGMLIRHPDMFYVSLKGDRDSVFLREAYRDSQLIDKDRLLVIKEKFRALVSVP***********************************************************************************************************
Disordered Region (DISOPRED)
***I****SAKATLSPSFPLFLSYKSPFLEKPKLYV********************LVLH**F********************KRRKELPFDNVIQRDKKLKLVSKIRKILVSQPDRIMSLKQLGRFRRDLGLTKKRRFIALLRKFPAVFEIIEEGVYSLRFKLTPEAERLYLEEVKVRNEMEDLLVTKLRKLLMMSLEKRILLEKIAHLKTDLGLPLEFRDTICHRYPQYFRVVATERGPALELTHWDPQLAVSAA******************IDRPLKFNRVKLPKGLNLSKGETRRICQFRDMPYISPYSDFSG**P**PEKEKHACGIVHEILSLTVEKKTLVDHLTHFREEFRFSQQVRGMLIRHPDMFYVSLKGDRDSVFLREAYRDSQLIDKDRLLVIKEKFRAL***************************************************DGNEDDWSDEDDDMPPDFDEDYGTVKIG********************************
Disordered Region (DISEMBL)
MEPILFLSSAKATLSPSFPLFLSYKSPFLEKPKLYVKSH***********QFWGKGLVLHKRFGSPGNVNKPHIPVAPVRASVKRRKELPFDNVIQRDKKLKLVSKIRKILVSQPDRIMSLKQLGRFRRDLGLTKKRRFIALLRKFPAVFEIIEEGVYSLRFKLTPEAERLYLEEVKVRNEMEDLLVTKLRKLLMMSLEKRILLEKIAHLKTDLGLPLEFRDTICHRYPQYFRVVATERGPALELTHWDPQLAVSAAELAAEENRIRELKEKDLIIDRPLKFNRVKLPKGLNLSKGETRRICQFRDMPYISPYSDFSGLRPGTPEKEKHACGIVHEILSLTVEKKTLVDHLTHFREEFRFSQQVRGMLIRHPDMFYVSLKGDRDSVFLREAYRDSQLIDKDRLLVIKEKFRALVSVPRFPKR************************EDWSIDDYMTDGQFDDVDDGNEDDWSDEDDDMPPDFDEDYGTVKIGENKSAKLVDSSVKKKEKVLAPVFPDGRPRERW
Disordered Region (DISPRO)
*********AKATLSPSFPLFLSYKSPFLEKPKLYVKSHLSASTTQVEKSQFWGKGLVLHKRFGSPGNVNKPHIPVAPVRASVKRRKELPFDNVIQRDKKLKLVSKIRKILVSQPDRIMSLKQLGRFRRDLGLTKKRRFIALLRKFPAVFEIIEEGVYSLRFKLTPEAERLYLEEVKVRNEMEDLLVTKLRKLLMMSLEKRILLEKIAHLKTDLGLPLEFRDTICHRYPQYFRVVATERGPALELTHWDPQLAVSAAELAAEENRIRELKEKDLIIDRPLKFNRVKLPKGLNLSKGETRRICQFRDMPYISPYSDFSGLRPGTPEKEKHACGIVHEILSLTVEKKTLVDHLTHFREEFRFSQQVRGMLIRHPDMFYVSLKGDRDSVFLREAYRDSQLIDKDRLLVIKEKFRALVSVP************************************************************MPPDFDEDYGTVKIGENKSAKLVDSSVKKKEKVLAPVFPDG******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEPILFLSSAKATLSPSFPLFLSYKSPFLEKPKLYVKSHLSASTTQVEKSQFWGKGLVLHKRFGSPGNVNKPHIPVAPVRASVKRRKELPFDNVIQRDKKLKLVSKIRKILVSQPDRIMSLKQLGRFRRDLGLTKKRRFIALLRKFPAVFEIIEEGVYSLRFKLTPEAERLYLEEVKVRNEMEDLLVTKLRKLLMMSLEKRILLEKIAHLKTDLGLPLEFRDTICHRYPQYFRVVATERGPALELTHWDPQxxxxxxxxxxxxxxxxxxxxxDLIIDRPLKFNRVKLPKGLNLSKGETRRICQFRDMPYISPYSDFSGLRPGTPEKEKHACGIVHEILSLTVEKKTLVDHLTHFREEFRFSQQVRGMLIRHPDMFYVSLKGDRDSVFLREAYRDSQLIDKDRLLVIKEKFRALVSVPRFPKRGAPQKDDHYSDRTDEPEEGSGEDGEDWSIDDYMTDGQFDDVDDGNEDDWSDEDDDMPPDFDEDYGTVKIGENKSAKLVDSSVKKKEKVLAPVFPDGRPRERW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	524
255564755	562	conserved hypothetical protein [Ricinus	0.996	0.928	0.745	0.0
147856413	1408	hypothetical protein VITISV_004914 [Viti	1.0	0.372	0.753	0.0
225454492	528	PREDICTED: uncharacterized protein LOC10	1.0	0.992	0.753	0.0
224127898	525	predicted protein [Populus trichocarpa]	0.959	0.958	0.721	0.0
449443941	508	PREDICTED: uncharacterized protein LOC10	0.940	0.970	0.667	0.0
297745420	1133	unnamed protein product [Vitis vinifera]	0.814	0.376	0.790	0.0
186511411	528	ubiquitin carboxyl-terminal hydrolase-li	0.984	0.977	0.664	0.0
2191151	878	contains similarity to membrane associat	0.805	0.480	0.731	1e-180
297810061	1305	hypothetical protein ARALYDRAFT_327675 [	0.828	0.332	0.708	1e-180
356506720	506	PREDICTED: uncharacterized protein LOC10	0.925	0.958	0.669	1e-177

>gi|255564755|ref|XP_002523372.1| conserved hypothetical protein [Ricinus communis] gi|223537460|gb|EEF39088.1| conserved hypothetical protein [Ricinus communis]

 Score =  739 bits (1907), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/531 (74%), Positives = 442/531 (83%), Gaps = 9/531 (1%)

Query: 1   MEPILFLSSAKATLSPSFPLFLSYKSPFLEKPKLYVKSHLSASTTQVEKSQFWGKGLVLH 60
           MEP L LSS   + S S P FLSYKS F EK K  VKSH S+S   V KSQF GK LV  
Sbjct: 34  MEPKLLLSSVNGSPSTSLPFFLSYKSDFFEKSKFSVKSHFSSSNFSVAKSQFLGKSLVFE 93

Query: 61  KR---FGSPGNVNKPHIPVAPVRASVKRRKELPFDNVIQRDKKLKLVSKIRKILVSQPDR 117
           ++   FGS   + K H P APVRA VKRRKEL FDNVIQRDKKLKLV KIRKILVSQPDR
Sbjct: 94  EKSSQFGS--TLRKTHAPFAPVRAVVKRRKELSFDNVIQRDKKLKLVLKIRKILVSQPDR 151

Query: 118 IMSLKQLGRFRRDLGLTKKRRFIALLRKFPAVFEIIEEGVYSLRFKLTPEAERLYLEEVK 177
           IMSL+QLG++RR+LGL K+RRFIALL++FPAVFEI+EEG + L+FKLTPEAERLYLEE+K
Sbjct: 152 IMSLRQLGKYRRELGLKKQRRFIALLKQFPAVFEIVEEGAFCLQFKLTPEAERLYLEELK 211

Query: 178 VRNEMEDLLVTKLRKLLMMSLEKRILLEKIAHLKTDLGLPLEFRDTICHRYPQYFRVVAT 237
           VRNEMEDLLV KLRKLLMMS++KRILLEKIAHLK D GLP+EFRDTICHRYPQYFRVVAT
Sbjct: 212 VRNEMEDLLVVKLRKLLMMSMDKRILLEKIAHLKNDFGLPVEFRDTICHRYPQYFRVVAT 271

Query: 238 ERGPALELTHWDPQLAVSAAELAAEENRIRELKEKDLIIDRPLKFNRVKLPKGLNLSKGE 297
           ERGPALELTHWDP+LAVSAAEL+ EENR REL+EKDLIIDRPLKFNRVKLPKGL LSK E
Sbjct: 272 ERGPALELTHWDPELAVSAAELSEEENRARELQEKDLIIDRPLKFNRVKLPKGLQLSKSE 331

Query: 298 TRRICQFRDMPYISPYSDFSGLRPGTPEKEKHACGIVHEILSLTVEKKTLVDHLTHFREE 357
            RRICQFRDMP+ISPY+DFS L+ GTPEKEKHAC +VHEILSL VEKKTLVDH THFREE
Sbjct: 332 MRRICQFRDMPFISPYADFSHLKSGTPEKEKHACAVVHEILSLCVEKKTLVDHFTHFREE 391

Query: 358 FRFSQQVRGMLIRHPDMFYVSLKGDRDSVFLREAYRDSQLIDKDRLLVIKEKFRALVSVP 417
           FRFSQQ+RGMLIRHPDMFYVSLKGDRDSVFLR+AYRDS L+DKDRLL+IKEK R+LVSVP
Sbjct: 392 FRFSQQLRGMLIRHPDMFYVSLKGDRDSVFLRKAYRDSHLVDKDRLLLIKEKLRSLVSVP 451

Query: 418 RFPKRGAPQKDDHYSDRTDEPEEGSGEDGEDWS-IDDYMT---DGQFDDVDDGNEDDWSD 473
           RFP+RGA  K+    + +DE E+ SGE+GEDWS ID YM+        D DD NEDDWSD
Sbjct: 452 RFPRRGAINKNADKENGSDEQEDASGEEGEDWSDIDSYMSGDGLDDDGDDDDDNEDDWSD 511

Query: 474 EDDDMPPDFDEDYGTVKIGENKSAKLVDSSVKKKEKVLAPVFPDGRPRERW 524
           E+DD PPDFDED  +V+I  + S    D+S K ++KVL P FPDG+PRERW
Sbjct: 512 EEDDTPPDFDEDDDSVRIHVSTSNNQSDNSTKNEKKVLVPAFPDGQPRERW 562

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147856413|emb|CAN82500.1| hypothetical protein VITISV_004914 [Vitis vinifera]

 Score =  731 bits (1888), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/528 (75%), Positives = 452/528 (85%), Gaps = 4/528 (0%)

Query: 1   MEPILFLSSAKATLSPSFPLFLSYKSPFLEKPKLYVKSHLSASTTQVEKSQFWGKGLVLH 60
           M+  L +SS+KA+ S   P FLS KS F EKPK+ VKSHLS +    +K+ F G  LVL 
Sbjct: 1   MDTKLLISSSKASPSTVLPFFLSCKSSFFEKPKVSVKSHLSFTPNHTQKTPFLGGSLVLR 60

Query: 61  KRFGSPGNVNKPHIPVAPVRASVKRRKELPFDNVIQRDKKLKLVSKIRKILVSQPDRIMS 120
           +R     N+ K H+PV P+RA+VKRRKELPFDNV+QRDKKLKLV KIRK+LVSQPDR+MS
Sbjct: 61  ERVDCLRNLRKTHVPVGPIRAAVKRRKELPFDNVVQRDKKLKLVLKIRKLLVSQPDRVMS 120

Query: 121 LKQLGRFRRDLGLTKKRRFIALLRKFPAVFEIIEEGVYSLRFKLTPEAERLYLEEVKVRN 180
           L+QLG++RR+LGLTKKRRFIALL+KFPA+FEI+EEGVYSL+FKLTPEAERLYLEE+K+RN
Sbjct: 121 LRQLGKYRRELGLTKKRRFIALLKKFPAIFEIVEEGVYSLKFKLTPEAERLYLEELKIRN 180

Query: 181 EMEDLLVTKLRKLLMMSLEKRILLEKIAHLKTDLGLPLEFRDTICHRYPQYFRVVATERG 240
           EMEDLLV KLRKLLMMS+EKRILLEKIAHLKTDLGLP EFRDTIC RYPQYF+VV TERG
Sbjct: 181 EMEDLLVVKLRKLLMMSMEKRILLEKIAHLKTDLGLPSEFRDTICQRYPQYFKVVQTERG 240

Query: 241 PALELTHWDPQLAVSAAELAAEENRIRELKEKDLIIDRPLKFNRVKLPKGLNLSKGETRR 300
           PALELTHWDP+LAVSAAE+  EE R+REL+E+DLIIDRP KFNRVKLPKGL+LSKGE RR
Sbjct: 241 PALELTHWDPELAVSAAEIWEEEKRVRELEERDLIIDRPPKFNRVKLPKGLSLSKGEMRR 300

Query: 301 ICQFRDMPYISPYSDFSGLRPGTPEKEKHACGIVHEILSLTVEKKTLVDHLTHFREEFRF 360
           + +FRDMPYISPYSDFSGLR G+PEKEKHACG+VHE+LSLTVEK+TLVDHLTHFREEFRF
Sbjct: 301 LSRFRDMPYISPYSDFSGLRSGSPEKEKHACGVVHEMLSLTVEKRTLVDHLTHFREEFRF 360

Query: 361 SQQVRGMLIRHPDMFYVSLKGDRDSVFLREAYRDSQLIDKDRLLVIKEKFRALVSVPRFP 420
           SQQ+RGMLIRHPDMFYVSLKGDRDSVFLREAY DSQLI+KDRLLVIKEK RALVSVPRF 
Sbjct: 361 SQQLRGMLIRHPDMFYVSLKGDRDSVFLREAYSDSQLIEKDRLLVIKEKLRALVSVPRFR 420

Query: 421 KRGAPQKDDHYSDRTDEPEEGSGEDGEDWS-IDDYMTDG---QFDDVDDGNEDDWSDEDD 476
           +RGAP+ D    + TDE E GSGE+GE+WS +D+ M DG     DD DD  EDDWSDEDD
Sbjct: 421 RRGAPRSDADVVEGTDEQEHGSGEEGEEWSDVDNLMGDGLDDDDDDDDDDEEDDWSDEDD 480

Query: 477 DMPPDFDEDYGTVKIGENKSAKLVDSSVKKKEKVLAPVFPDGRPRERW 524
           + PPDFDED GT+K   NK  K VD+  K +EKVL P+FPDGRPRERW
Sbjct: 481 NTPPDFDEDDGTMKFELNKEVKQVDNLGKDEEKVLVPMFPDGRPRERW 528

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225454492|ref|XP_002281157.1| PREDICTED: uncharacterized protein LOC100248200 [Vitis vinifera]

 Score =  726 bits (1874), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/528 (75%), Positives = 452/528 (85%), Gaps = 4/528 (0%)

Query: 1   MEPILFLSSAKATLSPSFPLFLSYKSPFLEKPKLYVKSHLSASTTQVEKSQFWGKGLVLH 60
           M+  L +SS+KA+ S   P FLS KS F EKPK+ VKSHLS +    +K+ F G  LVL 
Sbjct: 1   MDTKLLISSSKASPSTVLPFFLSCKSSFFEKPKVSVKSHLSFTPNHTQKTPFLGGSLVLR 60

Query: 61  KRFGSPGNVNKPHIPVAPVRASVKRRKELPFDNVIQRDKKLKLVSKIRKILVSQPDRIMS 120
           +R     N+ K H+PV P+RA+VKRRKELPFDNV+QRDKKLKLV KIRK+LVSQPDR+MS
Sbjct: 61  ERVDCLRNLRKTHVPVGPIRAAVKRRKELPFDNVVQRDKKLKLVLKIRKLLVSQPDRVMS 120

Query: 121 LKQLGRFRRDLGLTKKRRFIALLRKFPAVFEIIEEGVYSLRFKLTPEAERLYLEEVKVRN 180
           L+QLG++RR+LGLTKKRRFIALL+KFPA+FEI+EEGVYSL+FKLTPEAERLYLEE+K+RN
Sbjct: 121 LRQLGKYRRELGLTKKRRFIALLKKFPAIFEIVEEGVYSLKFKLTPEAERLYLEELKIRN 180

Query: 181 EMEDLLVTKLRKLLMMSLEKRILLEKIAHLKTDLGLPLEFRDTICHRYPQYFRVVATERG 240
           EMEDLLV KLRKLLMMS+EKRILLEKIAHLKTDLGLP EFRDTIC RYPQYF+VV TERG
Sbjct: 181 EMEDLLVVKLRKLLMMSMEKRILLEKIAHLKTDLGLPSEFRDTICQRYPQYFKVVQTERG 240

Query: 241 PALELTHWDPQLAVSAAELAAEENRIRELKEKDLIIDRPLKFNRVKLPKGLNLSKGETRR 300
           PALELTHWDP+LAVSAAE+  EE R+REL+E+DLIIDRP KFNRVKLPKGL+LSKGE RR
Sbjct: 241 PALELTHWDPELAVSAAEIWEEEKRVRELEERDLIIDRPPKFNRVKLPKGLSLSKGEMRR 300

Query: 301 ICQFRDMPYISPYSDFSGLRPGTPEKEKHACGIVHEILSLTVEKKTLVDHLTHFREEFRF 360
           + +FRDMPYISPYSDFSGLR G+PEKEKHACG+VHE+LSLTVEK+TLVDHLTHFREEFRF
Sbjct: 301 LSRFRDMPYISPYSDFSGLRSGSPEKEKHACGVVHEMLSLTVEKRTLVDHLTHFREEFRF 360

Query: 361 SQQVRGMLIRHPDMFYVSLKGDRDSVFLREAYRDSQLIDKDRLLVIKEKFRALVSVPRFP 420
           SQQ+RGMLIRHPDMFYVSLKGDRDSVFLREAY DSQLI+KDRLLVIKEK RALVSVPRF 
Sbjct: 361 SQQLRGMLIRHPDMFYVSLKGDRDSVFLREAYSDSQLIEKDRLLVIKEKLRALVSVPRFR 420

Query: 421 KRGAPQKDDHYSDRTDEPEEGSGEDGEDWS-IDDYMTDG---QFDDVDDGNEDDWSDEDD 476
           +RGAP+ D    + TDE E GSGE+GE+WS +D+ M DG     DD DD  EDDWSDEDD
Sbjct: 421 RRGAPRSDADVVEGTDEQEHGSGEEGEEWSDVDNLMGDGLDDDDDDDDDDEEDDWSDEDD 480

Query: 477 DMPPDFDEDYGTVKIGENKSAKLVDSSVKKKEKVLAPVFPDGRPRERW 524
           + PPDFDED GT+K   NK  K VD+  K +EKVL P+FPDGRPRERW
Sbjct: 481 NTPPDFDEDDGTMKFELNKEVKQVDNLGKDEEKVLVPMFPDGRPRERW 528

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127898|ref|XP_002320191.1| predicted protein [Populus trichocarpa] gi|222860964|gb|EEE98506.1| predicted protein [Populus trichocarpa]

 Score =  687 bits (1773), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/510 (72%), Positives = 425/510 (83%), Gaps = 7/510 (1%)

Query: 19  PLFLSYKSP-FLEKPKLYVKSHLSASTTQVEKSQFWGKGLVLHKRFGSPGNVNKPHIPVA 77
           PLFLS KS  FLE+PK  V++HLSAS  Q+EKSQF G GLV  ++ GS     + H+P  
Sbjct: 19  PLFLSQKSSYFLERPKFSVRTHLSASPFQLEKSQFLGNGLVFEEKAGSFTGKLRTHVPFE 78

Query: 78  PVRAS-VKRRKELPFDNVIQRDKKLKLVSKIRKILVSQPDRIMSLKQLGRFRRDLGLTKK 136
           P+RA+ VK RKE PFDNVI RDKKLKLV KIRKIL +QPDRIMS+++LG+FRR+LGLTK 
Sbjct: 79  PIRAAGVKWRKERPFDNVIDRDKKLKLVMKIRKILANQPDRIMSIRELGKFRRELGLTKN 138

Query: 137 RRFIALLRKFPAVFEIIEEGVYSLRFKLTPEAERLYLEEVKVRNEMEDLLVTKLRKLLMM 196
           RRFIALL+KFPAVFEI+EEG YSL+F+LTPEAERLYLEE+ V+NEMEDLLV KLRKLLMM
Sbjct: 139 RRFIALLKKFPAVFEIVEEGAYSLQFRLTPEAERLYLEELNVKNEMEDLLVLKLRKLLMM 198

Query: 197 SLEKRILLEKIAHLKTDLGLPLEFRDTICHRYPQYFRVVATERGPALELTHWDPQLAVSA 256
           S++KRILLEKIAHLKTD GLPLEFRDTICHRYPQYFRVVAT RGPALELTHWDP+LAVSA
Sbjct: 199 SMDKRILLEKIAHLKTDFGLPLEFRDTICHRYPQYFRVVATGRGPALELTHWDPELAVSA 258

Query: 257 AELAAEENRIRELKEKDLIIDRPLKFNRVKLPKGLNLSKGETRRICQFRDMPYISPYSDF 316
           A+LA EENR +EL+EKDLIIDRPLKFNRVKLPKGL LSK E RRICQFRD+PYISPYSDF
Sbjct: 259 AKLAEEENRAKELQEKDLIIDRPLKFNRVKLPKGLQLSKSEMRRICQFRDIPYISPYSDF 318

Query: 317 SGLRPGTPEKEKHACGIVHEILSLTVEKKTLVDHLTHFREEFRFSQQVRGMLIRHPDMFY 376
           + LR G+ EKEKHACG+VHEILSLTVEK+TLVDHLTHFREEFRFSQQ+RGMLIRHPD+FY
Sbjct: 319 THLRSGSKEKEKHACGVVHEILSLTVEKRTLVDHLTHFREEFRFSQQLRGMLIRHPDLFY 378

Query: 377 VSLKGDRDSVFLREAYRDSQLIDKDRLLVIKEKFRALVSVPRFPKRGAPQKDDHYS-DRT 435
           VSLKG+RDS+FLREAY DS L++KDRLL IKEK R+LV VPRFP+RGAP+ +     D T
Sbjct: 379 VSLKGERDSIFLREAYSDSHLVEKDRLLNIKEKLRSLVMVPRFPRRGAPRTEAAGGEDGT 438

Query: 436 DEPEEGSGEDGEDWS-IDDYMTDGQFDDVDDGNEDDWSDEDDDMPPDFDEDYGTVKIGEN 494
              E+GS E+ EDWS +D Y++  + DD  + + DD  D+        D+D GTVKI  +
Sbjct: 439 SGQEDGSDEEAEDWSDVDSYVSGDELDDDYEDDWDDEDDDTPPDF---DDDDGTVKIHLS 495

Query: 495 KSAKLVDSSVKKKEKVLAPVFPDGRPRERW 524
           KSA   D++   KEKVLAPVFPDGRPR+RW
Sbjct: 496 KSASQPDTATNNKEKVLAPVFPDGRPRDRW 525

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443941|ref|XP_004139734.1| PREDICTED: uncharacterized protein LOC101208628 [Cucumis sativus] gi|449529076|ref|XP_004171527.1| PREDICTED: uncharacterized protein LOC101226708 [Cucumis sativus]

 Score =  679 bits (1752), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/539 (66%), Positives = 408/539 (75%), Gaps = 46/539 (8%)

Query: 1   MEPILFLSSAKATLSPSFPLFLSYKSPFLEKPKLYVKSHLSASTTQVEKSQFWGKGLVLH 60
           M+  L L S KA+LS S P  L +KS +                    KSQFWGK L L 
Sbjct: 1   MDSKLLLYSPKASLSISVPFILGHKSYY------------------SVKSQFWGKNLDLR 42

Query: 61  KRFGSPGNVNKPHIPVAPVRASVKRRKELPFDNVIQRDKKLKLVSKIRKILVSQPDRIMS 120
            R     N+ K H+P  P+RA VKRRKELPFDNVIQ+DKKLKL  +IRKILV QPDR+MS
Sbjct: 43  NR---NDNLRKSHVPFQPIRAVVKRRKELPFDNVIQKDKKLKLALRIRKILVQQPDRVMS 99

Query: 121 LKQLGRFRRDLGLTKKRRFIALLRKFPAVFEIIEEGVYSLRFKLTPEAERLYLEEVKVRN 180
           LK LGRFR+DLGL +KRR IALL+KFPAVFE++EEG ++L+FKLT EAERLYLEE+K+RN
Sbjct: 100 LKDLGRFRKDLGLERKRRIIALLKKFPAVFEVVEEGAFALKFKLTAEAERLYLEELKIRN 159

Query: 181 EMEDLLVTKLRKLLMMSLEKRILLEKIAHLKTDLGLPLEFRDTICHRYPQYFRVVATERG 240
           EME LLV KLRKLLMMS +KRILLEKIAHL+TDLGLPLEFRDTICHRYPQYFRVVAT+RG
Sbjct: 160 EMEGLLVIKLRKLLMMSADKRILLEKIAHLRTDLGLPLEFRDTICHRYPQYFRVVATKRG 219

Query: 241 PALELTHWDPQLAVSAAELAAEENRIRELKEKDLIIDRPLKFNRVKLPKGLNLSKGETRR 300
           PALELTHWDP+LAVSAAELA EENR REL+EK+LIIDRPLKFNRVKLPKGLNLSKGE R+
Sbjct: 220 PALELTHWDPELAVSAAELAEEENRARELEEKNLIIDRPLKFNRVKLPKGLNLSKGEMRK 279

Query: 301 ICQFRDMPYISPYSDFSGLRPGTPEKEKHACGIVHEILSLTVEKKTLVDHLTHFREEFRF 360
           I QFRD+PYISPYSDFSGL+ GTP KEKHAC +VHEIL+LT+EK+TLVDHLTHFREEFRF
Sbjct: 280 ISQFRDIPYISPYSDFSGLKAGTPPKEKHACAVVHEILNLTLEKRTLVDHLTHFREEFRF 339

Query: 361 SQQVRGMLIRHPDMFYVSLKGDRDSVFLREAYRDSQLIDKDRLLVIKEKFRALVSVPRFP 420
           SQQ+RGMLIRHPDMFYVSLKGDRDSVFLREAYR SQLIDKDRLL+IKEK R LV+VPR  
Sbjct: 340 SQQLRGMLIRHPDMFYVSLKGDRDSVFLREAYRGSQLIDKDRLLIIKEKLRVLVTVPRLR 399

Query: 421 KRGAPQKDDHYSDRTDEPEEGSGEDGED-------------WSIDDYMTDGQFDDVDDGN 467
            RGA   D    D TD+P + SGE+  D                 D   +G F       
Sbjct: 400 GRGASNSDTKGGD-TDQPNDMSGEEWSDVDDLLDDDDDEFDDDEFDDDNNGAF------- 451

Query: 468 EDDWSDEDDDMPPDF--DEDYGTVKIGENKSAKLVDSSVKKKEKVLAPVFPDGRPRERW 524
           EDDW+DE DD PP F  DED  ++ IG  K  K V+   K  +  L+PV PDG+ RE+W
Sbjct: 452 EDDWNDE-DDTPPSFDGDEDGESINIGSRKQ-KQVNDLQKVDQSPLSPVLPDGKHREKW 508

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745420|emb|CBI40500.3| unnamed protein product [Vitis vinifera]

 Score =  672 bits (1734), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/429 (79%), Positives = 380/429 (88%), Gaps = 2/429 (0%)

Query: 15  SPS--FPLFLSYKSPFLEKPKLYVKSHLSASTTQVEKSQFWGKGLVLHKRFGSPGNVNKP 72
           SPS   P FLS KS F EKPK+ VKSHLS +    +K+ F G  LVL +R     N+ K 
Sbjct: 10  SPSTVLPFFLSCKSSFFEKPKVSVKSHLSFTPNHTQKTPFLGGSLVLRERVDCLRNLRKT 69

Query: 73  HIPVAPVRASVKRRKELPFDNVIQRDKKLKLVSKIRKILVSQPDRIMSLKQLGRFRRDLG 132
           H+PV P+RA+VKRRKELPFDNV+QRDKKLKLV KIRK+LVSQPDR+MSL+QLG++RR+LG
Sbjct: 70  HVPVGPIRAAVKRRKELPFDNVVQRDKKLKLVLKIRKLLVSQPDRVMSLRQLGKYRRELG 129

Query: 133 LTKKRRFIALLRKFPAVFEIIEEGVYSLRFKLTPEAERLYLEEVKVRNEMEDLLVTKLRK 192
           LTKKRRFIALL+KFPA+FEI+EEGVYSL+FKLTPEAERLYLEE+K+RNEMEDLLV KLRK
Sbjct: 130 LTKKRRFIALLKKFPAIFEIVEEGVYSLKFKLTPEAERLYLEELKIRNEMEDLLVVKLRK 189

Query: 193 LLMMSLEKRILLEKIAHLKTDLGLPLEFRDTICHRYPQYFRVVATERGPALELTHWDPQL 252
           LLMMS+EKRILLEKIAHLKTDLGLP EFRDTIC RYPQYF+VV TERGPALELTHWDP+L
Sbjct: 190 LLMMSMEKRILLEKIAHLKTDLGLPSEFRDTICQRYPQYFKVVQTERGPALELTHWDPEL 249

Query: 253 AVSAAELAAEENRIRELKEKDLIIDRPLKFNRVKLPKGLNLSKGETRRICQFRDMPYISP 312
           AVSAAE+  EE R+REL+E+DLIIDRP KFNRVKLPKGL+LSKGE RR+ +FRDMPYISP
Sbjct: 250 AVSAAEIWEEEKRVRELEERDLIIDRPPKFNRVKLPKGLSLSKGEMRRLSRFRDMPYISP 309

Query: 313 YSDFSGLRPGTPEKEKHACGIVHEILSLTVEKKTLVDHLTHFREEFRFSQQVRGMLIRHP 372
           YSDFSGLR G+PEKEKHACG+VHE+LSLTVEK+TLVDHLTHFREEFRFSQQ+RGMLIRHP
Sbjct: 310 YSDFSGLRSGSPEKEKHACGVVHEMLSLTVEKRTLVDHLTHFREEFRFSQQLRGMLIRHP 369

Query: 373 DMFYVSLKGDRDSVFLREAYRDSQLIDKDRLLVIKEKFRALVSVPRFPKRGAPQKDDHYS 432
           DMFYVSLKGDRDSVFLREAY DSQLI+KDRLLVIKEK RALVSVPRF +RGAP+ D    
Sbjct: 370 DMFYVSLKGDRDSVFLREAYSDSQLIEKDRLLVIKEKLRALVSVPRFRRRGAPRSDADVV 429

Query: 433 DRTDEPEEG 441
           + TDE E G
Sbjct: 430 EGTDEQEHG 438

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186511411|ref|NP_001118908.1| ubiquitin carboxyl-terminal hydrolase-like protein [Arabidopsis thaliana] gi|116830693|gb|ABK28304.1| unknown [Arabidopsis thaliana] gi|332656571|gb|AEE81971.1| ubiquitin carboxyl-terminal hydrolase-like protein [Arabidopsis thaliana]

 Score =  655 bits (1691), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/536 (66%), Positives = 425/536 (79%), Gaps = 20/536 (3%)

Query: 1   MEPILFLSSAKATLSPSFPLFLSYKSPFLEKPKLYVKSHLSASTTQVEKSQFWGKGLVLH 60
           MEP L LS+ K       PLF+S  SPF EK KL VKS L  ST +  +SQF G+GL+L 
Sbjct: 1   MEPKLLLSAHK-------PLFVSCNSPFNEKTKLSVKSGLPMSTIRAARSQFMGEGLILG 53

Query: 61  KRFGSPGNVNKPHIPVAPVRASVKRRKELPFDNVIQRDKKLKLVSKIRKILVSQPDRIMS 120
            ++G      K  + V PVRA+VKRRKEL FD+V+QRDKKLKLV  IRKILVSQPDR+MS
Sbjct: 54  NKYGFWSTSRKTRVVVEPVRAAVKRRKELTFDSVVQRDKKLKLVLNIRKILVSQPDRMMS 113

Query: 121 LKQLGRFRRDLGLTKKRRFIALLRKFPAVFEIIEEGVYSLRFKLTPEAERLYLEEVKVRN 180
           L+ LG++RRDLGL K+RRFIALLRK+P VFEI+EEG YSLRFK+T EAERLYL+E+++RN
Sbjct: 114 LRGLGKYRRDLGLKKRRRFIALLRKYPGVFEIVEEGAYSLRFKMTSEAERLYLDEMRIRN 173

Query: 181 EMEDLLVTKLRKLLMMSLEKRILLEKIAHLKTDLGLPLEFRDTICHRYPQYFRVVATERG 240
           E+ED+LV KLRKL+MMS++KRILLEKI+HLKTDLGLPLEFRDTIC RYPQYFRVV T RG
Sbjct: 174 ELEDVLVVKLRKLVMMSIDKRILLEKISHLKTDLGLPLEFRDTICQRYPQYFRVVPTPRG 233

Query: 241 PALELTHWDPQLAVSAAELAAEENRIRELKEKDLIIDRPLKFNRVKLPKGLNLSKGETRR 300
           PALELTHWDP+LAVSAAEL+ ++NR RE +E++LIIDRP KFNRVKLP+GLNLSK ETR+
Sbjct: 234 PALELTHWDPELAVSAAELSEDDNRTRESEERNLIIDRPPKFNRVKLPRGLNLSKSETRK 293

Query: 301 ICQFRDMPYISPYSDFSGLRPGTPEKEKHACGIVHEILSLTVEKKTLVDHLTHFREEFRF 360
           I QFRDM YISPY DFS LR GT EKEKHACG++HE+LSLT EK+TLVDHLTHFREEFRF
Sbjct: 294 ISQFRDMQYISPYKDFSHLRSGTLEKEKHACGVIHELLSLTTEKRTLVDHLTHFREEFRF 353

Query: 361 SQQVRGMLIRHPDMFYVSLKGDRDSVFLREAYRDSQLIDKDRLLVIKEKFRALVSVPRFP 420
           SQQ+RGMLIRHPD+FYVSLKG+RDSVFLREAYR+S+LIDKD L ++KEK RALVSVPRFP
Sbjct: 354 SQQLRGMLIRHPDLFYVSLKGERDSVFLREAYRNSELIDKDPLTLVKEKMRALVSVPRFP 413

Query: 421 KRGAPQKDDHYSD------RTDEPEEGSGEDGEDWS-IDDYMTDGQFDDVDDGNEDDWSD 473
           +RG P+KD+   +        D  EE    D E+WS +D Y+      + DDG+  D   
Sbjct: 414 RRGGPRKDEEGREVEIDGSDADGEEEEEESDAEEWSDVDGYLEGEDGGNDDDGDWTDDEG 473

Query: 474 EDDDMPPDF-----DEDYGTVKIGENKSAKLVDSSVKKKEKVLAPVFPDGRPRERW 524
           E +D+PP+F     DE+  +VKIG + S++   S  KK+EKVL PVFPDG PRE+W
Sbjct: 474 E-EDVPPNFDDDDEDEEEDSVKIGLSPSSRKSSSPRKKEEKVLTPVFPDGTPREKW 528

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|2191151|gb|AAB61038.1| contains similarity to membrane associated salt-inducible protein, partial [Arabidopsis thaliana]

 Score =  639 bits (1648), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 314/429 (73%), Positives = 367/429 (85%), Gaps = 7/429 (1%)

Query: 1   MEPILFLSSAKATLSPSFPLFLSYKSPFLEKPKLYVKSHLSASTTQVEKSQFWGKGLVLH 60
           MEP L LS+ K       PLF+S  SPF EK KL VKS L  ST +  +SQF G+GL+L 
Sbjct: 55  MEPKLLLSAHK-------PLFVSCNSPFNEKTKLSVKSGLPMSTIRAARSQFMGEGLILG 107

Query: 61  KRFGSPGNVNKPHIPVAPVRASVKRRKELPFDNVIQRDKKLKLVSKIRKILVSQPDRIMS 120
            ++G      K  + V PVRA+VKRRKEL FD+V+QRDKKLKLV  IRKILVSQPDR+MS
Sbjct: 108 NKYGFWSTSRKTRVVVEPVRAAVKRRKELTFDSVVQRDKKLKLVLNIRKILVSQPDRMMS 167

Query: 121 LKQLGRFRRDLGLTKKRRFIALLRKFPAVFEIIEEGVYSLRFKLTPEAERLYLEEVKVRN 180
           L+ LG++RRDLGL K+RRFIALLRK+P VFEI+EEG YSLRFK+T EAERLYL+E+++RN
Sbjct: 168 LRGLGKYRRDLGLKKRRRFIALLRKYPGVFEIVEEGAYSLRFKMTSEAERLYLDEMRIRN 227

Query: 181 EMEDLLVTKLRKLLMMSLEKRILLEKIAHLKTDLGLPLEFRDTICHRYPQYFRVVATERG 240
           E+ED+LV KLRKL+MMS++KRILLEKI+HLKTDLGLPLEFRDTIC RYPQYFRVV T RG
Sbjct: 228 ELEDVLVVKLRKLVMMSIDKRILLEKISHLKTDLGLPLEFRDTICQRYPQYFRVVPTPRG 287

Query: 241 PALELTHWDPQLAVSAAELAAEENRIRELKEKDLIIDRPLKFNRVKLPKGLNLSKGETRR 300
           PALELTHWDP+LAVSAAEL+ ++NR RE +E++LIIDRP KFNRVKLP+GLNLSK ETR+
Sbjct: 288 PALELTHWDPELAVSAAELSEDDNRTRESEERNLIIDRPPKFNRVKLPRGLNLSKSETRK 347

Query: 301 ICQFRDMPYISPYSDFSGLRPGTPEKEKHACGIVHEILSLTVEKKTLVDHLTHFREEFRF 360
           I QFRDM YISPY DFS LR GT EKEKHACG++HE+LSLT EK+TLVDHLTHFREEFRF
Sbjct: 348 ISQFRDMQYISPYKDFSHLRSGTLEKEKHACGVIHELLSLTTEKRTLVDHLTHFREEFRF 407

Query: 361 SQQVRGMLIRHPDMFYVSLKGDRDSVFLREAYRDSQLIDKDRLLVIKEKFRALVSVPRFP 420
           SQQ+RGMLIRHPD+FYVSLKG+RDSVFLREAYR+S+LIDKD L ++KEK RALVSVPRFP
Sbjct: 408 SQQLRGMLIRHPDLFYVSLKGERDSVFLREAYRNSELIDKDPLTLVKEKMRALVSVPRFP 467

Query: 421 KRGAPQKDD 429
           +RG P+KD+
Sbjct: 468 RRGGPRKDE 476

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297810061|ref|XP_002872914.1| hypothetical protein ARALYDRAFT_327675 [Arabidopsis lyrata subsp. lyrata] gi|297318751|gb|EFH49173.1| hypothetical protein ARALYDRAFT_327675 [Arabidopsis lyrata subsp. lyrata]

 Score =  637 bits (1644), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 316/446 (70%), Positives = 371/446 (83%), Gaps = 12/446 (2%)

Query: 1   MEPILFLSSAKATLSPSFPLFLSYKSPFLEKPKLYVKSHLSASTTQVEKSQFWGKGLVLH 60
           MEP L LS+ K       PLF+S  SPF EK  + VKS L  ST +  +SQF G+GL+L 
Sbjct: 1   MEPKLLLSAHK-------PLFVSCNSPFNEKTNISVKSGLPMSTIRAARSQFMGEGLILG 53

Query: 61  KRFGSPGNVNKPHIPVAPVRASVKRRKELPFDNVIQRDKKLKLVSKIRKILVSQPDRIMS 120
            ++G      K  + V PVRA+VKRRKEL FD+V+QRDKKLKLV  IRKILVSQPDR+MS
Sbjct: 54  NKYGFWSASRKTRLVVEPVRAAVKRRKELTFDSVVQRDKKLKLVLNIRKILVSQPDRMMS 113

Query: 121 LKQLGRFRRDLGLTKKRRFIALLRKFPAVFEIIEEGVYSLRFKLTPEAERLYLEEVKVRN 180
           L+ LG++RRDLGL K+RRFIALLRK+P VFEI+EEG YSLRFK+T EAERLYLEE+++RN
Sbjct: 114 LRGLGKYRRDLGLKKRRRFIALLRKYPGVFEIVEEGAYSLRFKMTSEAERLYLEEMRIRN 173

Query: 181 EMEDLLVTKLRKLLMMSLEKRILLEKIAHLKTDLGLPLEFRDTICHRYPQYFRVVATERG 240
           E+ED+LV KLRKL+MMS++KRILLEKI+HL+TDLGLPLEFRDTIC RYPQYFRVV T RG
Sbjct: 174 ELEDVLVVKLRKLVMMSIDKRILLEKISHLRTDLGLPLEFRDTICQRYPQYFRVVPTPRG 233

Query: 241 PALELTHWDPQLAVSAAELAAEENRIRELKEKDLIIDRPLKFNRVKLPKGLNLSKGETRR 300
           PALELTHWDP+LAVSAAEL+ ++NR RE +E++LIIDRP KFNRVKLP+GLNLSK ETR+
Sbjct: 234 PALELTHWDPELAVSAAELSEDDNRTRESEERNLIIDRPPKFNRVKLPRGLNLSKSETRK 293

Query: 301 ICQFRDMPYISPYSDFSGLRPGTPEKEKHACGIVHEILSLTVEKKTLVDHLTHFREEFRF 360
           I QFRDM YISPY DFS LR GT EKEKHACG++HE+LSLT EK+TLVDHLTHFREEFRF
Sbjct: 294 ISQFRDMRYISPYKDFSHLRSGTLEKEKHACGVIHELLSLTTEKRTLVDHLTHFREEFRF 353

Query: 361 SQQVRGMLIRHPDMFYVSLKGDRDSVFLREAYRDSQLIDKDRLLVIKEKFRALVSVPRFP 420
           SQQ+RGMLIRHPD+FYVSLKG+RDSVFLREAYR+S+LIDKD L ++KEK RALVSVPRFP
Sbjct: 354 SQQLRGMLIRHPDLFYVSLKGERDSVFLREAYRNSELIDKDPLTLVKEKMRALVSVPRFP 413

Query: 421 KRGAPQKDDHYSDRTDEPEEGSGEDG 446
           +RG P+K++   D     EE  G D 
Sbjct: 414 RRGGPRKEEEGRD-----EEMDGSDA 434

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356506720|ref|XP_003522124.1| PREDICTED: uncharacterized protein LOC100810556 isoform 1 [Glycine max] gi|356506722|ref|XP_003522125.1| PREDICTED: uncharacterized protein LOC100810556 isoform 2 [Glycine max]

 Score =  629 bits (1621), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 341/509 (66%), Positives = 405/509 (79%), Gaps = 24/509 (4%)

Query: 20  LFLSYKSPFLEKPKLYVKSHLSASTTQVEKSQFWGKGLVLHKRFGSPGNVNKPHI-PVAP 78
            FLS   PF  KPKL  K + +     ++KS FWG  L       S  +  +P +  V P
Sbjct: 18  FFLSNTLPFHSKPKLSTKFNCT-----LQKSHFWGSNLSW---VPSQSHHGRPKLDAVRP 69

Query: 79  V-RASVKRRKELPFDNVIQRDKKLKLVSKIRKILVSQPDRIMSLKQLGRFRRDLGLTKKR 137
           +  A+VKRRKELPFDNVIQRDKKLK V K+R ILV+QPDR+MSLK LG+F+RDLGL KKR
Sbjct: 70  IITAAVKRRKELPFDNVIQRDKKLKFVLKVRNILVTQPDRVMSLKTLGKFKRDLGLDKKR 129

Query: 138 RFIALLRKFPAVFEIIEEGVYSLRFKLTPEAERLYLEEVKVRNEMEDLLVTKLRKLLMMS 197
           R IA+L+KFPAVF+I+EEGV+SL+FK+TPEAERLY EE +VRNEME+L+V KLRKLLMMS
Sbjct: 130 RLIAVLKKFPAVFQIMEEGVFSLKFKMTPEAERLYFEETRVRNEMEELVVVKLRKLLMMS 189

Query: 198 LEKRILLEKIAHLKTDLGLPLEFRDTICHRYPQYFRVVATERGPALELTHWDPQLAVSAA 257
           LEKRILLEKIAHLKTDLGLP EFRDT+CHRYPQYF+VVAT+RGPALELTHWDP+LAVSAA
Sbjct: 190 LEKRILLEKIAHLKTDLGLPQEFRDTVCHRYPQYFKVVATQRGPALELTHWDPELAVSAA 249

Query: 258 ELAAEENRIRELKEKDLIIDRPLKFNRVKLPKGLNLSKGETRRICQFRDMPYISPYSDFS 317
           ELAAEENRIRE++E++LIIDRP KFNRVKLPKGLNLSKGE R+I QFRD+PY SPYSDFS
Sbjct: 250 ELAAEENRIREMEEQNLIIDRPPKFNRVKLPKGLNLSKGEMRKIMQFRDLPYFSPYSDFS 309

Query: 318 GLRPGTPEKEKHACGIVHEILSLTVEKKTLVDHLTHFREEFRFSQQVRGMLIRHPDMFYV 377
           GLRPG+ EKEKHACG+VHEILSLT+EK+TLVDH THFREEFRFSQQ+RGMLIRHPDMFYV
Sbjct: 310 GLRPGSREKEKHACGVVHEILSLTLEKRTLVDHFTHFREEFRFSQQLRGMLIRHPDMFYV 369

Query: 378 SLKGDRDSVFLREAYRDSQLIDKDRLLVIKEKFRALVSVPRFPKRGAPQKDDHYSDRTDE 437
           SLKGDRDSVFLRE YRDSQL++KDRLL+IKEK R LV+VPRFPK  A +  +     +D 
Sbjct: 370 SLKGDRDSVFLREGYRDSQLVEKDRLLLIKEKLRTLVNVPRFPKGPARRIVEDSMRESDG 429

Query: 438 PEEGSGEDGEDWS--IDDYMTDGQFDDVDDGNEDDWSDEDDDMPPDFDEDYGTVKIGENK 495
            E+ SG++ E+WS  +D+ ++D  + D DD +     DED ++          ++IG+ K
Sbjct: 430 REDESGQEEEEWSEDVDNLLSDDDWSDEDDDDLPPDFDEDGEL----------LEIGQGK 479

Query: 496 SAKLVDSSVKKKEKVLAPVFPDGRPRERW 524
           + K    S +  E VL PVF DGRPRE+W
Sbjct: 480 TIK--QDSRQNDEMVLLPVFADGRPREQW 506

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	524
TAIR|locus:4515103321	528	WTF1 "what's this factor?" [Ar	0.805	0.799	0.722	4.1e-173
TAIR|locus:2166305	494	emb1692 "embryo defective 1692	0.637	0.676	0.371	2.7e-59
TAIR|locus:504955534	409	RPD1 "ROOT PRIMORDIUM DEFECTIV	0.656	0.841	0.316	6.6e-42
TAIR|locus:2138738	395	AT4G08940 [Arabidopsis thalian	0.595	0.789	0.353	2.2e-41
TAIR|locus:2042561	415	AT2G31290 [Arabidopsis thalian	0.589	0.744	0.333	7.8e-39
TAIR|locus:2009230	390	AT1G06440 [Arabidopsis thalian	0.681	0.915	0.306	3.5e-36
TAIR|locus:2207380	413	AT1G79120 [Arabidopsis thalian	0.606	0.769	0.296	1.9e-35
TAIR|locus:2012981	470	AT1G71850 "AT1G71850" [Arabido	0.627	0.7	0.296	4.2e-31
TAIR|locus:2064940	387	WTF9 "AT2G39120" [Arabidopsis	0.608	0.824	0.305	8.8e-31

TAIR|locus:4515103321 WTF1 "what's this factor?" [Arabidopsis thaliana (taxid:3702)]

 Score = 1590 (564.8 bits), Expect = 4.1e-173, Sum P(2) = 4.1e-173
 Identities = 310/429 (72%), Positives = 360/429 (83%)

Query:     1 MEPILFLSSAKATLSPSFPLFLSYKSPFLEKPKLYVKSHLSASTTQVEKSQFWGKGLVLH 60
             MEP L LS+ K       PLF+S  SPF EK KL VKS L  ST +  +SQF G+GL+L 
Sbjct:     1 MEPKLLLSAHK-------PLFVSCNSPFNEKTKLSVKSGLPMSTIRAARSQFMGEGLILG 53

Query:    61 KRFGSPGNVNKPHIPVAPVRASVKRRKELPFDNVIQRDKKLKLVSKIRKILVSQPDRIMS 120
              ++G      K  + V PVRA+VKRRKEL FD+V+QRDKKLKLV  IRKILVSQPDR+MS
Sbjct:    54 NKYGFWSTSRKTRVVVEPVRAAVKRRKELTFDSVVQRDKKLKLVLNIRKILVSQPDRMMS 113

Query:   121 LKQLGRFRRDLGLTKKRRFIALLRKFPAVFEIIEEGVYSLRFKLTPEAERLYLEEVKVRN 180
             L+ LG++RRDLGL K+RRFIALLRK+P VFEI+EEG YSLRFK+T EAERLYL+E+++RN
Sbjct:   114 LRGLGKYRRDLGLKKRRRFIALLRKYPGVFEIVEEGAYSLRFKMTSEAERLYLDEMRIRN 173

Query:   181 EMEDLLVTKLRKLLMMSLEKRILLEKIAHLKTDLGLPLEFRDTICHRYPQYFRVVATERG 240
             E+ED+LV KLRKL+MMS++KRILLEKI+HLKTDLGLPLEFRDTIC RYPQYFRVV T RG
Sbjct:   174 ELEDVLVVKLRKLVMMSIDKRILLEKISHLKTDLGLPLEFRDTICQRYPQYFRVVPTPRG 233

Query:   241 PALELTHWDPQLAVSXXXXXXXXNRIRELKEKDLIIDRPLKFNRVKLPKGLNLSKGETRR 300
             PALELTHWDP+LAVS        NR RE +E++LIIDRP KFNRVKLP+GLNLSK ETR+
Sbjct:   234 PALELTHWDPELAVSAAELSEDDNRTRESEERNLIIDRPPKFNRVKLPRGLNLSKSETRK 293

Query:   301 ICQFRDMPYISPYSDFSGLRPGTPEKEKHACGIVHEILSLTVEKKTLVDHLTHFREEFRF 360
             I QFRDM YISPY DFS LR GT EKEKHACG++HE+LSLT EK+TLVDHLTHFREEFRF
Sbjct:   294 ISQFRDMQYISPYKDFSHLRSGTLEKEKHACGVIHELLSLTTEKRTLVDHLTHFREEFRF 353

Query:   361 SQQVRGMLIRHPDMFYVSLKGDRDSVFLREAYRDSQLIDKDRLLVIKEKFRALVSVPRFP 420
             SQQ+RGMLIRHPD+FYVSLKG+RDSVFLREAYR+S+LIDKD L ++KEK RALVSVPRFP
Sbjct:   354 SQQLRGMLIRHPDLFYVSLKGERDSVFLREAYRNSELIDKDPLTLVKEKMRALVSVPRFP 413

Query:   421 KRGAPQKDD 429
             +RG P+KD+
Sbjct:   414 RRGGPRKDE 422

GO:0005576 "extracellular region" evidence=ISM

TAIR|locus:2166305 emb1692 "embryo defective 1692" [Arabidopsis thaliana (taxid:3702)]

 Score = 608 (219.1 bits), Expect = 2.7e-59, P = 2.7e-59
 Identities = 133/358 (37%), Positives = 212/358 (59%)

Query:    92 DNVIQRDKKLKLVSKIRKILVSQPDRIMSLKQLGRFRRDLGLTKKRRFIALLRKFPAVFE 151
             D  + +  +++ V K+  +L+S+P   + ++ L + R  L +      ++++R++P +FE
Sbjct:    66 DRHVVKQNRVRFVQKLNTLLLSKPKHYIPIEILYKCRSYLCIENPLAILSMIRRYPTIFE 125

Query:   152 IIE-----------EGVYSLRFKLTPEAERLYLEEVKVRNEMEDLLVTKLRKLLMMSLEK 200
             +             + +  L  +LT  A  L ++E+ +++E+ D L TKL+KLLM+S  +
Sbjct:   126 LFTTPTPHLPMNATKPLSQLCVRLTSAASSLAMQELNLKSEISDKLATKLQKLLMLSSHR 185

Query:   201 RILLEKIAHLKTDLGLPLEFRDTICHRYPQYFRVVATERGPALELTHWDPQLAVSXXXXX 260
             R+LL K+ H+  D G P  FR  +C+ YP  F+ V T  G ALEL   DP+LA       
Sbjct:   186 RLLLSKLVHIAPDFGFPPNFRSRLCNDYPDKFKTVDTSYGRALELVSSDPELA------- 238

Query:   261 XXXNRIRELK-EKDLIIDRPLKFNRVKLPKGLNLSKGETRRICQFRDMPYISPYSDFSG- 318
                N++   + ++ LI+DRPLKF R+ L +GLNL +     + +FR+ P + PY   S  
Sbjct:   239 ---NQMPSPEVDRGLIVDRPLKFKRLNLRRGLNLKRRHQGFLIKFRESPDVCPYKMSSDY 295

Query:   319 LRPGTPEKEKHACGIVHEILSLTVEKKTLVDHLTHFREEFRFSQQVRGMLIRHPDMFYVS 378
             L   + E EK AC +V E+L LTVEK+TL+DHLTHFR+EF    ++R +++RHP++FYVS
Sbjct:   296 LASESIEAEKRACAVVREVLGLTVEKRTLIDHLTHFRKEFSLPNKLRDLIVRHPELFYVS 355

Query:   379 LKGDRDSVFLREAYRDS-QLIDKDRLLVIKEKFRALVSVPRFPKRGAPQKDDHYSDRT 435
             +KG RDSVFL EAY D+  L+DKD  LVI+E+   L+   +  +R   +K     D++
Sbjct:   356 IKGMRDSVFLVEAYNDNGDLLDKDERLVIRERLIDLIQEGKRIRRERRRKGATLGDKS 413

GO:0005634 "nucleus" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

TAIR|locus:504955534 RPD1 "ROOT PRIMORDIUM DEFECTIVE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 444 (161.4 bits), Expect = 6.6e-42, P = 6.6e-42
 Identities = 116/366 (31%), Positives = 201/366 (54%)

Query:    71 KPHIPVAPVRASVKRRKELPFDNVIQRDKKLKLVSKIRKILVSQPDRIMSLKQLGRFRRD 130
             KP      +     R ++  +DN ++ +KK++ V K   +++SQP+  +++  L    R 
Sbjct:    32 KPFSQSTTIPKKQDRVRDHGYDNYMEVEKKIRKVVKFHSLILSQPNHTIAISLLDTLARR 91

Query:   131 LGLT-KKRRFIALLRKFPAVFEIIEEGVYSLRF-KLTPEA-ERLYLEEVKVRNEMEDLLV 187
             LGL  K+    A L KFP VFEI E  V  + + +LT +A +++  E   V +++ D  V
Sbjct:    92 LGLGFKQHEPGAFLLKFPHVFEIYEHPVQRILYCRLTRKALDQIRHEHEAVLDQIPDA-V 150

Query:   188 TKLRKLLMMSLEKRILLEKIAHLKTDLGLPLEFRDTICHRYPQYFRVVATE--RGPALEL 245
             T+LRKL+MMS   RI LE +   +T+ GLP +F  ++  ++PQ+FR++  E  R   +E+
Sbjct:   151 TRLRKLVMMSNTGRIRLEHVRIARTEFGLPEDFEYSVILKHPQFFRLIDGEETRDKYIEI 210

Query:   246 THWDPQLAVSXXXXXXXXNRIRELKEKDLIID-RPLKFNRV-KLPKGLNLSKGETRRICQ 303
                DP L++          R+RE++ +   ID   ++F+ V   P G  + K     + +
Sbjct:   211 VEKDPNLSICAI------ERVREIEYRTKGIDAEDVRFSFVVNFPPGFKIGKYFRIAVWK 264

Query:   304 FRDMPYISPYSDFSG--LRPGTPEK--EKHACGIVHEILSLTVEKKTLVDHLTHFREEFR 359
             ++ +PY SPY D SG  LR    +   EK +   +HE+LSLTVEKK  ++ + HFR    
Sbjct:   265 WQRLPYWSPYEDISGYDLRSMEAQNRLEKRSVACIHELLSLTVEKKITLERIAHFRNVMN 324

Query:   360 FSQQVRGMLIRHPDMFYVSLKGDRD---SVFLREAYRDSQLIDKDRLLVIKEKFRALVSV 416
               ++++  L++H  +FY+S +G+     +VFLRE Y+  +L++ + + + + +   LV +
Sbjct:   325 LPKKLKEFLLQHQGIFYISTRGNYGKLHTVFLREGYKRGELVEPNDVYLARRRLAELVLM 384

Query:   417 -PRFPK 421
              PR  K
Sbjct:   385 SPRKAK 390

GO:0009507 "chloroplast" evidence=ISM

GO:0008285 "negative regulation of cell proliferation" evidence=IMP

GO:0010102 "lateral root morphogenesis" evidence=IMP

TAIR|locus:2138738 AT4G08940 [Arabidopsis thaliana (taxid:3702)]

 Score = 439 (159.6 bits), Expect = 2.2e-41, P = 2.2e-41
 Identities = 115/325 (35%), Positives = 172/325 (52%)

Query:    88 ELP-FDNVIQRDKKLKLVSKIRKILVSQPDRIMSLKQLGRFRRDLGLTKKRRFIALLRKF 146
             +LP  ++++ RD   + + + ++ +  QP+RI+ L   G+  R+LG  + R+    + K 
Sbjct:    67 KLPHLESLVSRDAHFRFLIRSKEFISKQPERILRLDDAGKLYRELGFPRGRKVTKFIPKH 126

Query:   147 PAVFEIIEEGVYSLRFKLTPEAERLYLEEVKVRNEMEDLLVTKLRKLLMMSLEKRILLEK 206
             P +F+        +    T   E L  EE  +   ME   V  +RKLLMM+ +KRILL K
Sbjct:   127 PLIFQTYRHSDGKIWLGFTEFMEDLLDEEKGLMESMELDRVNCVRKLLMMTKDKRILLSK 186

Query:   207 IAHLKTDLGLPLEFRDTICHRYPQYFRVVATERGP-ALELTHWDPQLAVSXXXXXXXXNR 265
             I H +   G+P +FRD +  +YP YFRVV    G   LEL +WD  LAVS          
Sbjct:   187 IHHTRLLFGIPEDFRDRVA-KYPDYFRVVTGGDGNRVLELVNWDTNLAVSELERLFM--- 242

Query:   266 IRELKEKDLIIDRPLKFNRVKLPKGLNLSKGETRRICQFRDMPYISPYSDFSGLRPGTPE 325
             I E K K     R  KF  VK  K L L + +TR++      P +SPYSD   L   + E
Sbjct:   243 IDEDKAK-----RVFKFP-VKHGKELELEEKDTRKLNLLNTFPLVSPYSDGWKLDVWSLE 296

Query:   326 KEKHACGIVHEILSLTVEKKTLVDHLTHFREEFRFSQQVRGMLIRHPDMFYVSLKGDRDS 385
              EK+  GIVHE L+LT+EK+  + H+  F++EF  ++Q   ML +    FY++      +
Sbjct:   297 AEKYRVGIVHEFLNLTLEKRASIHHIVEFKDEFSLTRQTYQMLKKQSMSFYLAGTEMNWT 356

Query:   386 VFLREAYRDSQ-LIDKDRLLVIKEK 409
             VFL++AY ++  L+ KD  +V  EK
Sbjct:   357 VFLKDAYDENGVLVSKDPQVVFNEK 381

GO:0009507 "chloroplast" evidence=ISM

GO:0006979 "response to oxidative stress" evidence=IMP

GO:0015824 "proline transport" evidence=RCA

TAIR|locus:2042561 AT2G31290 [Arabidopsis thaliana (taxid:3702)]

 Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
 Identities = 111/333 (33%), Positives = 177/333 (53%)

Query:    86 RKELPFDNVIQRDKKLKLVSKIRKILVSQPDRIMSLKQLGRFRRDLGLTKKRRFIALLRK 145
             +K+   ++ + R+K+  + S+++ I++  P+++ S+K L +  + L L  K   +  L+K
Sbjct:    29 KKDPDLESALSRNKRWIVNSRLKNIILRCPNQVASIKFLQKKFKTLDLQGKA--LNWLKK 86

Query:   146 FPAVFEI-IEEGVYSLRFKLTPEAERLYLEEVKVRNEMEDLLVTKLRKLLMMSLEKRILL 204
             +P  F + +E   Y  R  LT     L  EE  V++  E +L  +L KLLM+S+ +R+ +
Sbjct:    87 YPCCFHVYLENDEYYCR--LTKPMMTLVEEEELVKDTQEPVLADRLAKLLMLSVNQRLNV 144

Query:   205 EKIAHLKTDLGLPLEFRDTICHRYPQYFRVV---ATERGPALELTHWDPQLAVSXXXXXX 261
              K+   K   G P ++   I  +Y   FR+V     +    +EL  W P+LAVS      
Sbjct:   145 VKLNEFKRSFGFPDDYVIRIVPKYSDVFRLVNYSGRKSSMEIELLLWKPELAVSA----- 199

Query:   262 XXNRIRELKEKDLIIDRPLKFNRVKLPKGLNLSKGETRRICQFRDMPYISPYSDFSGLRP 321
                 +    +K      P  F+   LP     +K    R  +F   PYISPY D   L  
Sbjct:   200 ----VEAAAKK--CGSEP-SFS-CSLPS--TWTK-PWERFMEFNAFPYISPYEDHGDLVE 248

Query:   322 GTPEKEKHACGIVHEILSLTVEKKTLVDHLTHFREEFRFSQQVRGMLIRHPDMFYVSLKG 381
             G+ E EK + G+VHE+LSLT+ KK  +  L+HF+ EF   +++ GML++HP +FYV  K 
Sbjct:   249 GSKESEKRSVGLVHELLSLTLWKKLSIVKLSHFKREFGLPEKLNGMLLKHPGIFYVGNKY 308

Query:   382 DRDSVFLREAYRDSQLIDKDRLLVIKEKFRALV 414
                +V LRE Y  S+LI KD L+V+K+KF  L+
Sbjct:   309 QVHTVILREGYNGSELIHKDPLVVVKDKFGELM 341

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2009230 AT1G06440 [Arabidopsis thaliana (taxid:3702)]

 Score = 390 (142.3 bits), Expect = 3.5e-36, P = 3.5e-36
 Identities = 115/375 (30%), Positives = 188/375 (50%)

Query:    55 KGLVLHKRFGSPGNVNKPHIPVAPVRASVKRRKELPFDNVIQRDKKLKLVSKIRKILVSQ 114
             + L++H   GS  NV         V AS  R ++  F+ ++ + K L  V  I+ + ++ 
Sbjct:     7 RSLLVHPCGGSIINVRSTTTSAQYV-AS--RSRDPVFEKLMDKYKNLLKVIAIQDLTLAN 63

Query:   115 PDR---IMSLKQLGRFRRDLGLTKKRRFIALLRKFPAVFEIIEEGVYSLRF-KLTPEAER 170
             P      +S++ L R  + L L   R   + LRK+P +F ++ + V +  F +LT  A  
Sbjct:    64 PTADPPSLSIEFLSRLSQKLHLN--RGAASFLRKYPHIFHVLYDPVKAEPFCRLTDVAME 121

Query:   171 LYLEEVKVRNEMEDLLVTKLRKLLMMSLEKRILLEKIAHLKTDLGLPLEFRDTICHRYPQ 230
             +  +E         L+V +L +LL MS+ K I L  +  +  +LGLP +F D++  + P 
Sbjct:   122 ISRQEALAITATLSLVVDRLVRLLSMSISKSIPLRAVFKVWRELGLPDDFEDSVISKNPH 181

Query:   231 YFRVVATERGPA--LELTHWDPQLAVSXXXXXXXXNRIRELKEKDLIIDRP-LKFN-RVK 286
              F++          LEL   + +  +          R+ E  ++D  +DR  ++F+ +  
Sbjct:   182 LFKLSDGHESNTHILELVQ-EEEKRLEFEAAVEKW-RVVECSKEDCSVDRTEIQFSFKHS 239

Query:   287 LPKGLNLSKGETRRICQFRDMPYISPYSDFSGL---RPGTPEKEKHACGIVHEILSLTVE 343
              P G+ LSK    ++ +++ +PY+ PY D  G    R G    EK A  I HE L+LTVE
Sbjct:   240 YPPGMRLSKTFKAKVKEWQRLPYVGPYEDMVGKKKSRSGVMGIEKRAVAIAHEFLNLTVE 299

Query:   344 KKTLVDHLTHFREEFRFSQQVRGMLIRHPDMFYVSLKGDRDSVFLREAYRDSQLIDKDRL 403
             K   V+ ++HFR+ F     +R + + HP MFYVS KG R +VFLREAY   +LID + +
Sbjct:   300 KMVEVEKISHFRKCFGIDLNIRDLFLDHPGMFYVSTKGKRHTVFLREAYERGRLIDPNPV 359

Query:   404 LVIKEKFRALVSVPR 418
                + K   LV + R
Sbjct:   360 YDARRKLLDLVLLGR 374

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2207380 AT1G79120 [Arabidopsis thaliana (taxid:3702)]

 Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
 Identities = 98/330 (29%), Positives = 167/330 (50%)

Query:    92 DNVIQRDKKLKLVSKIRKILVSQPDRIMSLKQLGRFRRDLGLTKKRRFIALLRKFPAVFE 151
             D  I  +KK  L+ +++ I+ +Q    + L+ L    + +G   K   +A + K+P +F 
Sbjct:    69 DKAIDLNKKPSLILQLKSIIQAQKHGSLLLRDL---EKHVGFVHKWNLMAAIEKYPTIF- 124

Query:   152 IIEEGVYSLRF-KLTPEAERLYLEEVKVRNEMEDLLVTKLRKLLMMSLEKRILLEKIAHL 210
              +  G     F  LT +A+++  EE +    ME +LV  LRKLLMMS++ R+ LEK+  +
Sbjct:   125 YVGGGHKEPPFVMLTEKAKKIAAEESEATESMEPILVNNLRKLLMMSVDCRVPLEKVEFI 184

Query:   211 KTDLGLPLEFRDTICHRYPQYFRVVATERGPALELTHWDPQLAVSXXXXXXXXNRIREL- 269
             ++ +GLP +F+ T+  +Y ++F +        L L +WD  LA++            E  
Sbjct:   185 QSAMGLPQDFKSTLIPKYTEFFSLKVINGKVNLVLENWDSSLAITAREDRLSREGFSESV 244

Query:   270 -KEKDLIIDRPLKF---NRVKL--PKGLNLSKGETRRICQFRDMPYISPYSDFSGLRPGT 323
                K + I +   F   N  K+  P G   +        +++ M + SPY +        
Sbjct:   245 GDRKRVRITKDGNFLGRNAFKISFPPGFRPNASYLEEFEKWQKMEFPSPYLNARRFDAAD 304

Query:   324 PEKEKHACGIVHEILSLTVEKKTLVDHLTHFREEFRFSQQVRGMLIRHPDMFYVSLKGDR 383
             P+  K    ++HE+LSLT+EK+     L  F  E+    ++   LI+H  +FY++ KG R
Sbjct:   305 PKARKRVVAVLHELLSLTMEKRVTCAQLDAFHSEYLLPSRLILCLIKHQGIFYITNKGAR 364

Query:   384 DSVFLREAYRDSQLIDKDRLLVIKEKFRAL 413
              +VFL++AY  S LI+K  LL+  ++F AL
Sbjct:   365 GTVFLKDAYAGSNLIEKCPLLLFHDRFVAL 394

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2012981 AT1G71850 "AT1G71850" [Arabidopsis thaliana (taxid:3702)]

 Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
 Identities = 102/344 (29%), Positives = 173/344 (50%)

Query:    79 VRASVKRRKELPFDNVIQRDKKLKLVSKIRKILVSQPDRIMSLKQLGRFRRDLGLTKKRR 138
             V  + K  ++   D+ ++R+K L+ +  I+ ++ S+P + + +  +   ++D  L    R
Sbjct:    25 VEDTYKFVRDRGLDHAVEREKNLRPLLSIKDLIRSEPAKSVPISVITS-QKD-SLRVPLR 82

Query:   139 FIALLRKFPAVF-EIIEEGV-YSLRFKLTPEAERLYLEEVKVRNE--MEDLLVTKLRKLL 194
              I  +R FP+VF E +  G+       LTPE      +E  V      +  L  +L KLL
Sbjct:    83 PIEFIRSFPSVFQEFLPGGIGIHPHISLTPEILNHDADEQLVYGSETYKQGLADRLLKLL 142

Query:   195 MMSLEKRILLEKIAHLKTDLGLPLEFRDTICHRYPQYFRVVATE-RGPA--LELTHWDPQ 251
             M++   +I LE +  LK DLGLP ++ +T+   +P YFRV+ ++ RG +  LEL  W  +
Sbjct:   143 MINRINKIPLEILDLLKWDLGLPKDYVETMVPEFPDYFRVIKSKLRGCSGELELVCWSNE 202

Query:   252 LAVSXXXXXXXXNRIRELKEKDLIIDRPLKFNRVKLPKGLNLSKGETRRICQFRDMPYIS 311
              AVS         R  E   K   I  P+KF+      G  + K   + I  ++ +PYIS
Sbjct:   203 HAVSVLEKKARTLRKGEYT-KGSAIAFPMKFSN-----GFVVDKKMKKWIDDWQKLPYIS 256

Query:   312 PYSDFSGLRPGTPEKEKHACGIVHEILSLTVEKKTLVDHLTHFREEFRFSQQVRGMLIRH 371
             PY +   L   + E +K A  ++HEI++L V KK   D + H  E      + + +L  H
Sbjct:   257 PYENALHLSATSDESDKWAAAVLHEIMNLFVSKKVEKDAILHLGEFMGLRSRFKRVLHNH 316

Query:   372 PDMFYVSLKGDRDSVFLREAYRDSQLIDKDRLLVIKEKFRALVS 415
             P +FY+S K    +V LR+ Y+   LI+ + L+  + ++  L++
Sbjct:   317 PGIFYLSSKLRTHTVVLRDGYKRGMLIESNELVTSRNRYMKLMN 360

GO:0005739 "mitochondrion" evidence=IDA

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

TAIR|locus:2064940 WTF9 "AT2G39120" [Arabidopsis thaliana (taxid:3702)]

 Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
 Identities = 104/340 (30%), Positives = 166/340 (48%)

Query:    83 VKRRKELPFDNV--IQRDKKLKLVSKIRKILVSQPDRIMSLKQLGRFRRDLGLTKKRRFI 140
             +K +++  FDN+  I R  +LK V  ++  +V +P+R + +  + +  R   ++ K   I
Sbjct:    29 MKWKRDPYFDNIEHILRSSQLKSVVSLKNCIVQEPNRCIPISAISKKTRQFDVSTK---I 85

Query:   141 A-LLRKFPAVFEIIEEGVYSLR-FKLTPEAERLYLEEVKVRNEMEDLLVTKLRKLLMMSL 198
             A  LRKFP++FE      Y+L  F+LTPEA  L  +E  V     D L  +L+KL++MS 
Sbjct:    86 AHFLRKFPSIFEEFVGPEYNLPWFRLTPEATELDRQERVVYQTSADDLRDRLKKLILMSK 145

Query:   199 EKRILLEKIAHLKTDLGLPLEFRDTICHRYPQYFRVVATE---RGPALELTHWDPQLAVS 255
             +  + L  +  +K  LGLP ++           FR V  E   +G A++    D  L+V 
Sbjct:   146 DNVLPLSIVQGMKWYLGLPDDYLQFPDMNLDSSFRFVDMEDGVKGLAVDYNGGDKVLSVL 205

Query:   256 XXXXXXXXNRIRELKEKDLIIDRPLKFNRVKLP-KGLNLSKGETRRICQFRDMPYISPYS 314
                          L+E    I+ PL       P KG  L       + +F+ +PY+SPY 
Sbjct:   206 QKNAMKKRRGEVSLEE----IEFPL------FPSKGCRLRVKIEDWLMEFQKLPYVSPYD 255

Query:   315 DFSGLRPGTPEKEKHACGIVHEILSLTVEKKTLVDHLTHFREEFRFSQQVRGMLIRHPDM 374
             D+S L P +   EK   G +HE+L L VE       L   ++ F   Q+V     RHP +
Sbjct:   256 DYSCLDPSSDIAEKRVVGFLHELLCLFVEHSAERKKLLCLKKHFGLPQKVHKAFERHPQI 315

Query:   375 FYVSLKGDRDSVFLREAYRDSQLIDKDRLLVIKEKFRALV 414
             FY+S+K    +  LRE YRD   ++   +L +++K+  L+
Sbjct:   316 FYLSMKNKTCTAILREPYRDKASVETHPVLGVRKKYIQLM 355


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.139   0.405    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      524       469   0.00098  118 3  11 22  0.36    34
                                                     35  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  610 (65 KB)
  Total size of DFA:  247 KB (2132 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  37.51u 0.11s 37.62t   Elapsed:  00:00:02
  Total cpu time:  37.52u 0.11s 37.63t   Elapsed:  00:00:02
  Start:  Sat May 11 06:09:35 2013   End:  Sat May 11 06:09:37 2013

GO:0005739 "mitochondrion" evidence=IDA

GO:0000373 "Group II intron splicing" evidence=IMP

GO:0003723 "RNA binding" evidence=IDA

GO:0017004 "cytochrome complex assembly" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.19	LOW CONFIDENCE prediction!
3rd Layer	3.4.19.12	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_XIV000395 hypothetical protein (525 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	524
pfam11955	332	pfam11955, PORR, Plant organelle RNA recognition d	1e-143

>gnl|CDD|221338 pfam11955, PORR, Plant organelle RNA recognition domain

 Score =  414 bits (1066), Expect = e-143
 Identities = 152/340 (44%), Positives = 220/340 (64%), Gaps = 9/340 (2%)

Query: 85  RRKELPFDNVIQRDKKLKLVSKIRKILVSQPDRIMSLKQLGRFRRDLGLTKKRRFIALLR 144
             ++   D  ++R+K+L+LV +++ +L+SQPD  + L+ L + RR LGL   R  +A LR
Sbjct: 1   WVRDPALDKAVEREKRLRLVLRLKDLLLSQPDHSLPLRDLSKLRRQLGLP--RGALAFLR 58

Query: 145 KFPAVFEIIEEGVYS-LRFKLTPEAERLYLEEVKVRNEMEDLLVTKLRKLLMMSLEKRIL 203
           K+P++FE+      S L  +LTP+AE L  EE ++    E  LV +LRKLLMMS ++R+ 
Sbjct: 59  KYPSIFELFRHPSDSVLCVRLTPKAEDLLAEEARLLESSEPDLVDRLRKLLMMSKDRRLP 118

Query: 204 LEKIAHLKTDLGLPLEFRDTICHRYPQYFRVVATERGPALELTHWDPQLAVSAAELAAEE 263
           LEK+AHL+ DLGLP +FRD++  +YP YFR+V  + G  LEL  WDP+LAVSA E   E 
Sbjct: 119 LEKLAHLRRDLGLPDDFRDSLVPKYPDYFRLVDEDGGDGLELVSWDPELAVSALEKRREI 178

Query: 264 NRIRELKEKDLIIDRPLKFNRVKLPKGLNLSKGETRRICQFRDMPYISPYSDFSGLRPGT 323
                 +     +DR   F  VK P G  L K    ++ +++ +PYISPY D S L PG+
Sbjct: 179 EDRGGDR-----VDRRFAFP-VKFPPGFKLRKKFREKLEEWQKLPYISPYEDASHLDPGS 232

Query: 324 PEKEKHACGIVHEILSLTVEKKTLVDHLTHFREEFRFSQQVRGMLIRHPDMFYVSLKGDR 383
            E EK A  ++HE+LSLTVEK+T VDHLTHFR+EF   Q++R +L+RHP +FY+S KG R
Sbjct: 233 DEAEKRAVAVLHELLSLTVEKRTEVDHLTHFRKEFGLPQKLRKVLLRHPGIFYLSTKGKR 292

Query: 384 DSVFLREAYRDSQLIDKDRLLVIKEKFRALVSVPRFPKRG 423
            +VFLREAY   +L++KD L++ +EK   L+   +  ++ 
Sbjct: 293 HTVFLREAYDRGELVEKDPLVLAREKLLELMLEGKRERKR 332

This family, which was previously known as DUF860, has been shown to be a component of group II intron ribonucleoprotein particles in maize chloroplasts. The domain is required for the splicing of the introns with which it associates, and promotes splicing in the context of a heterodimer with the RNase III-domain protein RNC1. All of the members are predicted to localise to mitochondria or chloroplasts. It seems likely that most PORR proteins function in organellar RNA metabolism. Length = 332

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	524
PF11955	335	PORR: Plant organelle RNA recognition domain; Inte	100.0
PF11955	335	PORR: Plant organelle RNA recognition domain; Inte	98.87
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	87.81
PLN03196	487	MOC1-like protein; Provisional	86.55
PF04931	784	DNA_pol_phi: DNA polymerase phi; InterPro: IPR0070	85.57
PF05285	324	SDA1: SDA1; InterPro: IPR007949 This domain consis	81.08

>PF11955 PORR: Plant organelle RNA recognition domain; InterPro: IPR021099 The plant organelle RNA recognition (PORR) domain, previously known as DUF860, is a component of group II intron ribonucleoprotein particles in maize chloroplasts

Probab=100.00  E-value=2.6e-113  Score=878.45  Aligned_cols=332  Identities=50%  Similarity=0.839  Sum_probs=313.9

Q ss_pred             cccCCChhhHHHhhhhhhHHHHHHHHHhhCCCCcccHHHHhhcccccCCCccchHHHHHHhCCcceEEeecCce-eeeee
Q 009820           85 RRKELPFDNVIQRDKKLKLVSKIRKILVSQPDRIMSLKQLGRFRRDLGLTKKRRFIALLRKFPAVFEIIEEGVY-SLRFK  163 (524)
Q Consensus        85 w~kD~~LD~~i~rek~lr~vl~Lk~lI~s~P~~~lpl~~Lsk~r~~LgL~~~~~v~~FLrkYP~iF~vf~~~~~-~l~~r  163 (524)
                      |+||++||++|+++|++++|++|+++|+++|+++|||++|++++++||| .++++++||+|||+||++|.++.. .+||+
T Consensus         1 w~rd~~lD~~i~~~k~l~~v~~l~~~i~~~p~~~~pl~~l~k~~~~L~l-~~~~~~~flrkyP~iF~~~~~~~~~~~~~~   79 (335)
T PF11955_consen    1 WVRDPYLDKVIEREKRLRFVLRLKDLILSQPSHSLPLRDLSKLRRQLGL-KPRKVSRFLRKYPSIFEVFQHPSRSVPWFR   79 (335)
T ss_pred             CCCchhHHHHHHhhhhHHHHHHHHHHHHcCCCCcccHHHHHHHHHhcCC-CcccHHHHHHhCCceEEEeccCCCCCceEE
Confidence            9999999999999999999999999999999999999999999999999 457899999999999999997655 56999


Q ss_pred             cCHHHHHHHHHHHHHHhhchHHHHHHHHHHhccccCccccHHHHHHHHHhcCCChhhhhhhcccCCCceEEEecC-CCCe
Q 009820          164 LTPEAERLYLEEVKVRNEMEDLLVTKLRKLLMMSLEKRILLEKIAHLKTDLGLPLEFRDTICHRYPQYFRVVATE-RGPA  242 (524)
Q Consensus       164 LT~~A~~L~~EE~~v~~e~e~~~V~rLrKLLMMS~~rrLpL~kL~~lr~dLGLP~DFr~slv~kyPd~Frvv~~~-~g~~  242 (524)
                      ||++|++|+.||+++++++++++|+||+||||||.+++|||++|+|++||||||+||++++|++|||||+||+.+ ++.+
T Consensus        80 LT~~a~~L~~eE~~~~~~~e~~~v~rL~KLLMMS~~~rlpL~ki~~l~~dLGLP~Df~~~lv~~yP~~Frvv~~~~~~~~  159 (335)
T PF11955_consen   80 LTPEAEDLLREERRVREEMEPDLVERLRKLLMMSKDRRLPLSKIAHLRRDLGLPDDFRDSLVPKYPDYFRVVDLEDGGRY  159 (335)
T ss_pred             eCHHHHHHHHHHHHHHHhChHHHHHHHHHHhccCCCCcccHHHHHHHHHHcCCChhhccchhhhCCCCcEEeecCCCCCE
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999954 4589


Q ss_pred             eEecccCCCCcchHHHHHHHHhhhHhhhhccccccCCCCCCcccCCCCcccChhHHHHHhhhhcCCCCCCCCCCCCCCCC
Q 009820          243 LELTHWDPQLAVSAAELAAEENRIRELKEKDLIIDRPLKFNRVKLPKGLNLSKGETRRICQFRDMPYISPYSDFSGLRPG  322 (524)
Q Consensus       243 LELV~WdpeLAVSa~E~~ae~~r~~e~~e~~~~i~~plkF~~v~fP~Gf~l~k~~~~~L~~fQ~LPYiSPYed~s~l~~~  322 (524)
                      ||||+|||+||||++|++++.+..   ...+..+..+++| ||+||+||++++++++||++||+|||+|||+|+++++++
T Consensus       160 LeLv~Wd~~LAvs~~E~~~~~~~~---~~~~~~~~~~~~F-p~~fp~G~~l~k~~~~~l~~fQ~lPy~SPYed~~~l~~~  235 (335)
T PF11955_consen  160 LELVSWDPELAVSALEKRAEKEYR---EKREDGFDRPLAF-PVSFPKGFRLKKKFREWLEEFQKLPYISPYEDASHLDPG  235 (335)
T ss_pred             EEEeecCCccCcCccchhhhhccc---cccccccCCceee-eecCCCCccccHHHHHHHHHHhcCCCCCCCCCccCCCCC
Confidence            999999999999999998875411   1123345678899 599999999999999999999999999999999999999


Q ss_pred             CchhhhHHHHHHHHHhhccchhhhhhhHHHHHHhhhCChHHHHHhhhhCCCeeEEEeeCCceeEEEeeccCCCCCccCCh
Q 009820          323 TPEKEKHACGIVHEILSLTVEKKTLVDHLTHFREEFRFSQQVRGMLIRHPDMFYVSLKGDRDSVFLREAYRDSQLIDKDR  402 (524)
Q Consensus       323 S~e~EKRaVaVlHELLSLTVEKr~~v~~L~hFR~efgLp~k~r~~L~RHPgIFYVS~Kg~~~TVfLREAY~~~~LIek~P  402 (524)
                      |+++|||||||+||||||||||||++++|+|||+|||||++|+++|+|||||||||+||+|+||||||||++|+||||||
T Consensus       236 s~~~EKRaVaVlHElLSLTveKr~~~~~L~~fr~ef~lp~k~~~~l~rHPgIFYvS~kg~~~TVfLrEAY~~~~Liek~P  315 (335)
T PF11955_consen  236 SDEAEKRAVAVLHELLSLTVEKRTEVDHLTHFRKEFGLPQKFRRLLLRHPGIFYVSLKGKRHTVFLREAYDGGELIEKHP  315 (335)
T ss_pred             ChHHHhHHHHHHHHHHHhhhhhhccHHHHHHHHHHhCCcHHHHHHHHhCCCeEEEeccCCceEEEEeeccCCCCCCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHHHHHHHHHHcCCCcCC
Q 009820          403 LLVIKEKFRALVSVPRFPK  421 (524)
Q Consensus       403 L~~iReK~~~Lm~~~~~~~  421 (524)
                      |+.+|+||++||..|++.+
T Consensus       316 l~~~r~k~~~Lm~~~~~~~  334 (335)
T PF11955_consen  316 LVVIREKFLELMQEGRRKR  334 (335)
T ss_pred             hHHHHHHHHHHHhhccccc
Confidence            9999999999999998744

It is required for the splicing of the introns with which it associates, and promotes splicing in the context of a heterodimer with the RNase III-domain protein RNC1. Proteins containing this domain are predicted to localise to mitochondria or chloroplasts []. It seems likely that most PORR proteins function in organellar RNA metabolism [].

>PF11955 PORR: Plant organelle RNA recognition domain; InterPro: IPR021099 The plant organelle RNA recognition (PORR) domain, previously known as DUF860, is a component of group II intron ribonucleoprotein particles in maize chloroplasts

Probab=98.87  E-value=2e-08  Score=104.71  Aligned_cols=140  Identities=23%  Similarity=0.415  Sum_probs=108.6

Q ss_pred             HHHhhchHHHHHHHHHHhccccCccccHHHHHHHHHhcCCChhhhhhhcccCCCceEEEecC-CC-CeeEecccCCCCcc
Q 009820          177 KVRNEMEDLLVTKLRKLLMMSLEKRILLEKIAHLKTDLGLPLEFRDTICHRYPQYFRVVATE-RG-PALELTHWDPQLAV  254 (524)
Q Consensus       177 ~v~~e~e~~~V~rLrKLLMMS~~rrLpL~kL~~lr~dLGLP~DFr~slv~kyPd~Frvv~~~-~g-~~LELV~WdpeLAV  254 (524)
                      .+..+.....|.+|+.+|--++++.||++.+...+..|||+.-=..+++.+||..|.+...+ .+ .++.|+.       
T Consensus        10 ~i~~~k~l~~v~~l~~~i~~~p~~~~pl~~l~k~~~~L~l~~~~~~~flrkyP~iF~~~~~~~~~~~~~~LT~-------   82 (335)
T PF11955_consen   10 VIEREKRLRFVLRLKDLILSQPSHSLPLRDLSKLRRQLGLKPRKVSRFLRKYPSIFEVFQHPSRSVPWFRLTP-------   82 (335)
T ss_pred             HHHhhhhHHHHHHHHHHHHcCCCCcccHHHHHHHHHhcCCCcccHHHHHHhCCceEEEeccCCCCCceEEeCH-------
Confidence            35556667789999999999999999999999999999994333357899999999998742 22 4555532       


Q ss_pred             hHHHHHHHHhhhHhhhhccccccCCCCCCcccCCCCcccChhHHHHHhhhhcCCCCCCCCCCCCCCCCCchhhhHHHHHH
Q 009820          255 SAAELAAEENRIRELKEKDLIIDRPLKFNRVKLPKGLNLSKGETRRICQFRDMPYISPYSDFSGLRPGTPEKEKHACGIV  334 (524)
Q Consensus       255 Sa~E~~ae~~r~~e~~e~~~~i~~plkF~~v~fP~Gf~l~k~~~~~L~~fQ~LPYiSPYed~s~l~~~S~e~EKRaVaVl  334 (524)
                      .|.+...+|.++                                                        -.+.|--+|..+
T Consensus        83 ~a~~L~~eE~~~--------------------------------------------------------~~~~e~~~v~rL  106 (335)
T PF11955_consen   83 EAEDLLREERRV--------------------------------------------------------REEMEPDLVERL  106 (335)
T ss_pred             HHHHHHHHHHHH--------------------------------------------------------HHhChHHHHHHH
Confidence            222222222211                                                        122345678899


Q ss_pred             HHHhhccchhhhhhhHHHHHHhhhCChHHHHHh-hhhCCCeeEEEe
Q 009820          335 HEILSLTVEKKTLVDHLTHFREEFRFSQQVRGM-LIRHPDMFYVSL  379 (524)
Q Consensus       335 HELLSLTVEKr~~v~~L~hFR~efgLp~k~r~~-L~RHPgIFYVS~  379 (524)
                      .-||+|+..+|+.+.+|.|++.+||||..|+.- +-+||+.|=|..
T Consensus       107 ~KLLMMS~~~rlpL~ki~~l~~dLGLP~Df~~~lv~~yP~~Frvv~  152 (335)
T PF11955_consen  107 RKLLMMSKDRRLPLSKIAHLRRDLGLPDDFRDSLVPKYPDYFRVVD  152 (335)
T ss_pred             HHHhccCCCCcccHHHHHHHHHHcCCChhhccchhhhCCCCcEEee
Confidence            999999999999999999999999999999986 699999998877

It is required for the splicing of the introns with which it associates, and promotes splicing in the context of a heterodimer with the RNase III-domain protein RNC1. Proteins containing this domain are predicted to localise to mitochondria or chloroplasts []. It seems likely that most PORR proteins function in organellar RNA metabolism [].

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=87.81  E-value=0.51  Score=55.53  Aligned_cols=139  Identities=17%  Similarity=0.163  Sum_probs=73.8

Q ss_pred             HHhccccCccccHHHHHHHHHhcCCChhhhhhhcccCC--CceEEEecCCCCeeEecccCCCCcchHHHHHHHHhhhHhh
Q 009820          192 KLLMMSLEKRILLEKIAHLKTDLGLPLEFRDTICHRYP--QYFRVVATERGPALELTHWDPQLAVSAAELAAEENRIREL  269 (524)
Q Consensus       192 KLLMMS~~rrLpL~kL~~lr~dLGLP~DFr~slv~kyP--d~Frvv~~~~g~~LELV~WdpeLAVSa~E~~ae~~r~~e~  269 (524)
                      -++..|..-+=||..|+.+..-+|--+-|...=+.+|.  -.||++.+....++-   +|-+ .-+.++..--. -....
T Consensus      1156 s~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~---YDvq-T~~~l~tylt~-~~~~~ 1230 (1516)
T KOG1832|consen 1156 STQLTSSSSSSPLSALWDASSTGGPRHSFDEDKAVKFSNSLQFRALGTEADDALL---YDVQ-TCSPLQTYLTD-TVTSS 1230 (1516)
T ss_pred             ceeeeeccccCchHHHhccccccCccccccccceeehhhhHHHHHhcccccceEE---Eecc-cCcHHHHhcCc-chhhh
Confidence            45566677788999999999999999999976666664  468888775432110   0100 11111110000 00000


Q ss_pred             hhccccccCCCCCCc---ccCCCCcccChhHHHHHhhhhcCC-CCCCCCCCC--CCCCCCchhhhHHHHHHHHHhhc
Q 009820          270 KEKDLIIDRPLKFNR---VKLPKGLNLSKGETRRICQFRDMP-YISPYSDFS--GLRPGTPEKEKHACGIVHEILSL  340 (524)
Q Consensus       270 ~e~~~~i~~plkF~~---v~fP~Gf~l~k~~~~~L~~fQ~LP-YiSPYed~s--~l~~~S~e~EKRaVaVlHELLSL  340 (524)
                      .+++     .-.|+|   +-|-.|.=-..+..+.+..|-++- |++----.+  .+--+|..-+-|+.-.+|-+=+|
T Consensus      1231 y~~n-----~a~FsP~D~LIlndGvLWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVIINSEIwD~RTF~lLh~VP~L 1302 (1516)
T KOG1832|consen 1231 YSNN-----LAHFSPCDTLILNDGVLWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVIINSEIWDMRTFKLLHSVPSL 1302 (1516)
T ss_pred             hhcc-----ccccCCCcceEeeCceeeeeccHHHHhhhhhheecccccccCCCceEEeechhhhhHHHHHHhcCccc
Confidence            0111     123443   334556544444556777777665 222111111  13335666777888888876665

>PLN03196 MOC1-like protein; Provisional

Probab=86.55  E-value=0.38  Score=53.07  Aligned_cols=51  Identities=24%  Similarity=0.371  Sum_probs=39.3

Q ss_pred             hHHHHHHHHHhhccchhhhhhhHHHHHHhhhCChH-HHHHhhhhCCCeeEEEeeC
Q 009820          328 KHACGIVHEILSLTVEKKTLVDHLTHFREEFRFSQ-QVRGMLIRHPDMFYVSLKG  381 (524)
Q Consensus       328 KRaVaVlHELLSLTVEKr~~v~~L~hFR~efgLp~-k~r~~L~RHPgIFYVS~Kg  381 (524)
                      .++|.-+-.+|++..+|  ...++..|++ +|++. .+..|+.++|.++-.|.+.
T Consensus       323 ~~~v~k~P~il~lSe~k--l~~kvefL~~-~Gls~edI~~mv~k~P~lL~~S~~~  374 (487)
T PLN03196        323 GRVIEKLPQIVSLNRNV--ALKHVEFLRG-RGFSAQDVAKMVVRCPQILALNLEI  374 (487)
T ss_pred             HHHHHhcchhhcccHHH--HHHHHHHHHH-cCCCHHHHHHHHHhCCceeeccHHH
Confidence            34566667888888764  3467888875 99985 8889999999999999843

>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar

Probab=85.57  E-value=0.82  Score=53.09  Aligned_cols=18  Identities=22%  Similarity=0.219  Sum_probs=10.0

Q ss_pred             cCChHhHHHHHHHHHHcC
Q 009820          399 DKDRLLVIKEKFRALVSV  416 (524)
Q Consensus       399 ek~PL~~iReK~~~Lm~~  416 (524)
                      |++++..+=|=++.|+..
T Consensus       583 e~~~~~vlveiLLslls~  600 (784)
T PF04931_consen  583 EPEWSEVLVEILLSLLSQ  600 (784)
T ss_pred             CccHHHHHHHHHHHHHhC
Confidence            456666665555555543

The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent

>PF05285 SDA1: SDA1; InterPro: IPR007949 This domain consists of several SDA1 protein homologues

Probab=81.08  E-value=1  Score=47.26  Aligned_cols=14  Identities=36%  Similarity=0.881  Sum_probs=8.2

Q ss_pred             CCCCCCCCCCCCCC
Q 009820          464 DDGNEDDWSDEDDD  477 (524)
Q Consensus       464 ~~~~~~~~~~~~~~  477 (524)
                      |+|++++|.+++++
T Consensus       111 d~Dd~~e~idv~~d  124 (324)
T PF05285_consen  111 DSDDEGEWIDVESD  124 (324)
T ss_pred             cccccCCcccccch
Confidence            33446777777555

SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	524
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-09

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 60.3 bits (145), Expect = 1e-09
 Identities = 65/469 (13%), Positives = 132/469 (28%), Gaps = 125/469 (26%)

Query: 39  HLSASTTQVEKSQ--FW---GKGLVLHKRF-GSPGNVNKPHIPVAPVRASVKRRKELPFD 92
           H+  S   V  +   FW    K   + ++F      +N   + ++P++   +R+  +   
Sbjct: 53  HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFL-MSPIKT-EQRQPSMMTR 110

Query: 93  NVI-QRDKKLKLVSKIRKILVSQPDRIMSLKQ-LGRFRRDLGLT--------KK------ 136
             I QRD+         K  VS+    + L+Q L   R    +         K       
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV 170

Query: 137 RRFIALLRKFP-AVF----------EIIEEGVYSLRFKLTPEAERLYLEEVKVRNEMEDL 185
                +  K    +F          E + E +  L +++ P           ++  +   
Sbjct: 171 CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS- 229

Query: 186 LVTKLRKLLMMSLEKRIL--LEKIAHLKT----DLGLPLEFRDTICH-----RYPQYFRV 234
           +  +LR+LL     +  L  L  + + K     +L          C      R+ Q    
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS---------CKILLTTRFKQVTDF 280

Query: 235 VATERGPALELTHWDPQLA-------------VSAAELAAEENRI---------RELKEK 272
           ++      + L H    L                  +L  E               +++ 
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDG 340

Query: 273 DLIIDRPLKFNRVKLPKGL-----NLSKGETRRICQFRDMPYISPYSDFSGLRPGT--PE 325
               D     N  KL   +      L   E R++           +   S   P    P 
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM-----------FDRLSVFPPSAHIPT 389

Query: 326 KEKHACGIVHEIL---SLTVEKKTLVDHLTHFREEFRFSQQVRGMLIRHPDMFYVSLKGD 382
                   +  ++    +  +   +V+ L               ++ + P    +S+   
Sbjct: 390 I-------LLSLIWFDVIKSDVMVVVNKL-----------HKYSLVEKQPKESTISI--- 428

Query: 383 RDSVFLREAYRDSQLIDKDRLLVIKEKFRALVSVPRFPKRGAPQKDDHY 431
             S++L    +        R +V  + +    +         P   D Y
Sbjct: 429 -PSIYLELKVKLENEYALHRSIV--DHYNIPKTFD--SDDLIPPYLDQY 472

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00