Citrus Sinensis ID: 009825

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520----
MANFVCRIIFQVSKLCTLLLKAVRSTLGSQGWDVLVPGAAVGKLVQVDRISPGSLSSSGDEPVILAVSKADGDEEVAAAGSNILGVILLQELPHLSHLGVRARQEKVVFVTCEDDEKVSDIERLAGKYVRLEASSTCVNLNPYITHGNDGNFGLKTLSGSSSSTVLVRGVHVSSFSASKAPMSSQGVSTGVILLADADADAMTSGAKAAACGRLASLSAVSEKVYSDQGVPASFLVPAGVVIPFGSMQLALEQSKCMDTFVSFLEQIETAGPEGGELDNLCCQLQELISALQPSEDIIESIERIFPANAHLIVRSSANVEDLAGMSAAGLYESIPNVNPSNLRVFQNAVARVWASLYTRRAVLSRRAAGVSQKDATMAVLVQEMLSPDLSFVLHTLSPTDRDHNSVEAEIAPGLGETLASGTRGTPWRLSSGKFDGLVRTQAFANFSEEMLVSGAGPADGVVIRLTVDYSKKPLTVDPIFRRQLGQRLCSVGFFLERKFGCPQDVEGCLVGKDIYAVQTRPQPH
ccccccHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEEEEEEEEcccccccccccccccEEEEEcccccccccccccccEEEEEcccccccccHHHHcccccccEEEEEccHHHHHHHHHHcccEEEEEEccccEEEcccccccccccccccccccccccccEEccccccccccccccccccccccEEEEccccccccccccHHHHcHHHHHcccccccccccccccccccccccccEEcHHHHHHHHHHcccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccccEEEEcccccccccccccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHccccccccEEEEEEEccccccccEEEEccccccccccEEEEEEcccccccccccccccccEEEEEccccccEEEEEccccEEEEEccccccccEEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHccccEEEEEEEccEEEEEccccccc
cccEEEHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEEEEEEEEEEEEcccccccccccEEEEEEEcccccccccccccEEEEEEccccccccEEEEEEcccEEEEEEcccHHHHHHHHHHcccEEEEEEccccEEEEEEcccccccccccccccccccccEHcccccccccEEccHHccccccccEEEEHHHccccccccccccccHHHHHHHHHccccEEccccccccccccccccccHHHHHHHHHHccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccEEEEEcccccccccccccccccccEcccccccHHHHHHHHHHHHHHHccHHHHHHHHHccccHHHHHHHHHHHHHcccccccEEEEEccccccccEEEEEEEcccccEEEccccccccEEEEEccccEEEEEHHccccEEEEEccccccccEEEEEEccccccHHcccccccHHHHHHHHHHHHHHHHHccccccEEEEEccccEEEEEEccccc
MANFVCRIIFQVSKLCTLLLKAVRSTlgsqgwdvlvpgaavgklvqvdrispgslsssgdepvILAVSKADGDEEVAAAGSNILGVILLqelphlshlgvrarqeKVVFVTceddekvsDIERLAGKYVRLEASstcvnlnpyithgndgnfglktlsgsssstvLVRGVHvssfsaskapmssqgvsTGVILLADADADAMTSGAKAAACGRLASLSAVSekvysdqgvpasflvpagvvipfgsMQLALEQSKCMDTFVSFLEQIEtagpeggeldNLCCQLQELISALQPSEDIIESIERIFPANahlivrssanvedlagmsaaglyesipnvnpsnlRVFQNAVARVWASLYTRRAVLSRRaagvsqkdATMAVLVQEMLspdlsfvlhtlsptdrdhnsveaeiapglgetlasgtrgtpwrlssgkfdgLVRTQAFANFSeemlvsgagpadgVVIRLTVdyskkpltvdpifRRQLGQRLCSVGFflerkfgcpqdvegclvgkdiyavqtrpqph
MANFVCRIIFQVSKLCTLLLKAVRSTLGSQGWDVLVPGAAVGKLVQVDRispgslsssgdepVILAVSKADGDEEVAAAGSNILGVILLQELPHLSHLGVRARQEKVVFvtceddekvsdierLAGKYVRLEASSTCVNLNPYITHGNDGNFGLKTLSGSSSSTVLVRGVHVSSfsaskapmssqGVSTGVILLADADADAMTSGAKAAACGRLASLSAVSEKVYSDQGVPASFLVPAGVVIPFGSMQLALEQSKCMDTFVSFLEQIETAGPEGGELDNLCCQLQELISALQPSEDIIESIERIFPANAHLIVRSSANVEDLAGMSAAGLYESIPNVNPSNLRVFQNAVARVWASLYTRRAVLsrraagvsqkdATMAVLVQEMLSPDLSFVLHTLSPTDRDHNSVEAEIapglgetlasgtrgtpWRLSSGKFDGLVRTQAFANFSEEMLVSGAGPADGVVIRLTVDYSKKPLTVDPIFRRQLGQRLCSVGFFLERKFGCPQDVEGCLVGKDIyavqtrpqph
MANFVCRIIFQVSKLCTLLLKAVRSTLGSQGWDVLVPGAAVGKLVQVDRISPGSLSSSGDEPVILAVSKADGDEEVAAAGSNILGVILLQELPHLSHLGVRARQEKVVFVTCEDDEKVSDIERLAGKYVRLEASSTCVNLNPYITHGNDGNFglktlsgsssstvlvrgvHVssfsaskapmssQGVSTGVILLADADADAMTSGAKAAACGRLASLSAVSEKVYSDQGVPASFLVPAGVVIPFGSMQLALEQSKCMDTFVSFLEQIETAGPEGGELDNLCCQLQELISALQPSEDIIESIERIFPANAHLIVRSSANVEDLAGMSAAGLYESIPNVNPSNLRVFQNAVARVWASLYTRRAVLSRRAAGVSQKDATMAVLVQEMLSPDLSFVLHTLSPTDRDHNSVEAEIAPGLGETLASGTRGTPWRLSSGKFDGLVRTQAFANFSEEMLVSGAGPADGVVIRLTVDYSKKPLTVDPIFRRQLGQRLCSVGFFLERKFGCPQDVEGCLVGKDIYAVQTRPQPH
**NFVCRIIFQVSKLCTLLLKAVRSTLGSQGWDVLVPGAAVGKLVQVDRI*************ILAV*******EVAAAGSNILGVILLQELPHLSHLGVRARQEKVVFVTCEDDEKVSDIERLAGKYVRLEASSTCVNLNPYITHGNDGNFGLKTL******TVLVRGVH*****************TGVILLADADADAMTSGAKAAACGRLASLSAVSEKVYSDQGVPASFLVPAGVVIPFGSMQLALEQSKCMDTFVSFLEQIETAGPEGGELDNLCCQLQELISALQPSEDIIESIERIFPANAHLIVRSSANVEDLAGMSAAGLYESIPNVNPSNLRVFQNAVARVWASLYTRRAVLSRRAAGVSQKDATMAVLVQEMLSPDLSFVLHTL***************************GTPWRLSSGKFDGLVRTQAFANFSEEMLVSGAGPADGVVIRLTVDYSKKPLTVDPIFRRQLGQRLCSVGFFLERKFGCPQDVEGCLVGKDIYAV*******
***FVCRIIFQVSKLCTLLLKAVRSTLGSQGWDVLVPGAAVGKLVQVDRISPGSLSSSGDEPVILAVSKADGDEEVAAAGSNILGVILLQELPHLSHLGVRARQEKVVFVTCEDDEKVSDIERLAGKYVRLEASSTCVNLNP************************************************VILLADADADAMTSGAKAAACGRLASLSAVSEKVYSDQGVPASFLVPAGVVIPFGSMQLALEQSKCMDTFVSFLEQIETAGPEGGELDNLCCQLQELISALQPSEDIIESIERIFPANAHLIVRSSANVEDLAGMSAAGLYESIPNVNPSNLRVFQNAVARVWASLYTRRAVLSRRAAGVSQKDATMAVLVQEMLSPDLSFVLHTLSPTDRDHNSVEAEIAPGLGETLASGTRGTPWRLSSGKFDGLVRTQAFANFSEEM*******************SKKPLTVDPIFRRQLGQRLCSVGFFLERKFGCPQDVEGCLVGKDIYAVQTRPQ**
MANFVCRIIFQVSKLCTLLLKAVRSTLGSQGWDVLVPGAAVGKLVQVDRISPGSLSSSGDEPVILAVSKADGDEEVAAAGSNILGVILLQELPHLSHLGVRARQEKVVFVTCEDDEKVSDIERLAGKYVRLEASSTCVNLNPYITHGNDGNFGLKTLSGSSSSTVLVRGVHVSSF***********VSTGVILLADADAD*********ACGRLASLSAVSEKVYSDQGVPASFLVPAGVVIPFGSMQLALEQSKCMDTFVSFLEQIETAGPEGGELDNLCCQLQELISALQPSEDIIESIERIFPANAHLIVRSSANVEDLAGMSAAGLYESIPNVNPSNLRVFQNAVARVWASLYTRRAVL*********KDATMAVLVQEMLSPDLSFVLHTLSPTDRDHNSVEAEIAPGLGETLASGTRGTPWRLSSGKFDGLVRTQAFANFSEEMLVSGAGPADGVVIRLTVDYSKKPLTVDPIFRRQLGQRLCSVGFFLERKFGCPQDVEGCLVGKDIYAVQTRPQPH
*ANFVCRIIFQVSKLCTLLLKAVRSTLGSQGWDVLVPGAAVGKLVQVDRISPGSLSSSGDEPVILAVSKADGDEEVAAAGSNILGVILLQELPHLSHLGVRARQEKVVFVTCEDDEKVSDIERLAGKYVRLEASSTCVNLNPYIT*********************************K**MSSQGVSTGVILLADADADAMTSGAKAAACGRLASLSAVSEKVYSDQGVPASFLVPAGVVIPFGSMQLALEQSKCMDTFVSFLEQIETAGPEGGELDNLCCQLQELISALQPSEDIIESIERIFPANAHLIVRSSANVEDLAGMSAAGLYESIPNVNPSNLRVFQNAVARVWASLYTRRAVLSRRAAGVSQKDATMAVLVQEMLSPDLSFVLHTLSPTDRDHNSVEAEIAPGLGETLASGTRGTPWRLSSGKFDGLVRTQAFANFSEEMLVSGAGPADGVVIRLTVDYSKKPLTVDPIFRRQLGQRLCSVGFFLERKFGCPQDVEGCLVGKDIYAVQTRP***
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MANFVCRIIFQVSKLCTLLLKAVRSTLGSQGWDVLVPGAAVGKLVQVDRISPGSLSSSGDEPVILAVSKADGDEEVAAAGSNILGVILLQELPHLSHLGVRARQEKVVFVTCEDDEKVSDIERLAGKYVRLEASSTCVNLNPYITHGNDGNFGLKTLSGSSSSTVLVRGVHVSSFSASKAPMSSQGVSTGVILLADADADAMTSGAKAAACGRLASLSAVSEKVYSDQGVPASFLVPAGVVIPFGSMQLALEQSKCMDTFVSFLEQIETAGPEGGELDNLCCQLQELISALQPSEDIIESIERIFPANAHLIVRSSANVEDLAGMSAAGLYESIPNVNPSNLRVFQNAVARVWASLYTRRAVLSRRAAGVSQKDATMAVLVQEMLSPDLSFVLHTLSPTDRDHNSVEAEIAPGLGETLASGTRGTPWRLSSGKFDGLVRTQAFANFSEEMLVSGAGPADGVVIRLTVDYSKKPLTVDPIFRRQLGQRLCSVGFFLERKFGCPQDVEGCLVGKDIYAVQTRPQPH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query524 2.2.26 [Sep-21-2011]
Q6ZY511196 Phosphoglucan, water diki yes no 0.982 0.430 0.660 0.0
Q2QTC21206 Phosphoglucan, water diki yes no 0.982 0.427 0.631 1e-180
Q8LPT91475 Alpha-glucan water dikina N/A no 0.860 0.305 0.263 3e-30
Q9STV01278 Alpha-glucan water dikina no no 0.816 0.334 0.263 9e-30
Q9AWA51464 Alpha-glucan water dikina N/A no 0.847 0.303 0.261 2e-27
Q9SAC61399 Alpha-glucan water dikina no no 0.853 0.319 0.25 6e-27
O29548 753 Probable phosphoenolpyruv yes no 0.576 0.401 0.271 3e-20
O34309 866 Putative phosphoenolpyruv yes no 0.511 0.309 0.266 3e-19
O27190 684 Probable phosphoenolpyruv yes no 0.545 0.418 0.261 7e-16
P46893 834 Probable phosphoenolpyruv yes no 0.526 0.330 0.241 9e-15
>sp|Q6ZY51|PWD_ARATH Phosphoglucan, water dikinase, chloroplastic OS=Arabidopsis thaliana GN=GWD3 PE=1 SV=1 Back     alignment and function desciption
 Score =  675 bits (1742), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/527 (66%), Positives = 416/527 (78%), Gaps = 12/527 (2%)

Query: 8    IIFQVSKLCTLLLKAVRSTLGSQGWDVLVPGAAVGKLVQVDRISPGSLSSSGDEPVILAV 67
            IIFQ+SKLCT+LLKAVR++LGS+GWDV+VPG+  G LVQV+ I PGSL ++   P+IL V
Sbjct: 670  IIFQISKLCTVLLKAVRNSLGSEGWDVVVPGSTSGTLVQVESIVPGSLPATSGGPIILLV 729

Query: 68   SKADGDEEVAAAGSNILGVILLQELPHLSHLGVRARQEKVVFVTCEDDEKVSDIERLAGK 127
            +KADGDEEV+AA  NI GV+LLQELPHLSHLGVRARQEK+VFVTC+DD+KV+DI RL GK
Sbjct: 730  NKADGDEEVSAANGNIAGVMLLQELPHLSHLGVRARQEKIVFVTCDDDDKVADIRRLVGK 789

Query: 128  YVRLEASSTCVNL-----------NPYITHGNDGNFGLKTLSGSSSSTVLVRGVHVSSFS 176
            +VRLEAS + VNL               T   D N   K  +   S ++        S S
Sbjct: 790  FVRLEASPSHVNLILSTEGRSRTSKSSATKKTDKNSLSKKKTDKKSLSIDDEESKPGSSS 849

Query: 177  ASKAPMSSQGVSTGVILLADADADAMTSGAKAAACGRLASLSAVSEKVYSDQGVPASFLV 236
            ++    SS+ + +G I+ A ADAD  TSG+K+AACG LASL+  S KV+S+ GVPASF V
Sbjct: 850  SNSLLYSSKDIPSGGII-ALADADVPTSGSKSAACGLLASLAEASSKVHSEHGVPASFKV 908

Query: 237  PAGVVIPFGSMQLALEQSKCMDTFVSFLEQIETAGPEGGELDNLCCQLQELISALQPSED 296
            P GVVIPFGSM+LAL+Q+   + F S LE++ETA PEGGELD++C Q+ E++  LQ  ++
Sbjct: 909  PTGVVIPFGSMELALKQNNSEEKFASLLEKLETARPEGGELDDICDQIHEVMKTLQVPKE 968

Query: 297  IIESIERIFPANAHLIVRSSANVEDLAGMSAAGLYESIPNVNPSNLRVFQNAVARVWASL 356
             I SI + F  +A LIVRSSANVEDLAGMSAAGLYESIPNV+PS+  VF ++V +VWASL
Sbjct: 969  TINSISKAFLKDARLIVRSSANVEDLAGMSAAGLYESIPNVSPSDPLVFSDSVCQVWASL 1028

Query: 357  YTRRAVLSRRAAGVSQKDATMAVLVQEMLSPDLSFVLHTLSPTDRDHNSVEAEIAPGLGE 416
            YTRRAVLSRRAAGVSQ++A+MAVLVQEMLSPDLSFVLHT+SP D D N VEAEIAPGLGE
Sbjct: 1029 YTRRAVLSRRAAGVSQREASMAVLVQEMLSPDLSFVLHTVSPADPDSNLVEAEIAPGLGE 1088

Query: 417  TLASGTRGTPWRLSSGKFDGLVRTQAFANFSEEMLVSGAGPADGVVIRLTVDYSKKPLTV 476
            TLASGTRGTPWRL+SGK DG+V+T AFANFSEE+LVSG GPADG  +RLTVDYSKK LTV
Sbjct: 1089 TLASGTRGTPWRLASGKLDGIVQTLAFANFSEELLVSGTGPADGKYVRLTVDYSKKRLTV 1148

Query: 477  DPIFRRQLGQRLCSVGFFLERKFGCPQDVEGCLVGKDIYAVQTRPQP 523
            D +FR+QLGQRL SVGFFLER FGC QDVEGCLVG+D+Y VQ+RPQP
Sbjct: 1149 DSVFRQQLGQRLGSVGFFLERNFGCAQDVEGCLVGEDVYIVQSRPQP 1195
Mediates the incorporation of phosphate into starch-like phospho-alpha-glucan, mostly at the C-3 position of glucose units. Required for starch degradation, suggesting that the phosphate content of starch regulates its degradability.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 9EC: .EC: 5
>sp|Q2QTC2|PWD_ORYSJ Phosphoglucan, water dikinase, chloroplastic OS=Oryza sativa subsp. japonica GN=GWD3 PE=3 SV=2 Back     alignment and function description
>sp|Q8LPT9|GWD1_CITRE Alpha-glucan water dikinase, chloroplastic OS=Citrus reticulata GN=R1 PE=2 SV=1 Back     alignment and function description
>sp|Q9STV0|GWD2_ARATH Alpha-glucan water dikinase 2 OS=Arabidopsis thaliana GN=GWD2 PE=2 SV=3 Back     alignment and function description
>sp|Q9AWA5|GWD1_SOLTU Alpha-glucan water dikinase, chloroplastic OS=Solanum tuberosum GN=R1 PE=1 SV=2 Back     alignment and function description
>sp|Q9SAC6|GWD1_ARATH Alpha-glucan water dikinase 1, chloroplastic OS=Arabidopsis thaliana GN=GWD1 PE=1 SV=2 Back     alignment and function description
>sp|O29548|PPSA_ARCFU Probable phosphoenolpyruvate synthase OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=ppsA PE=3 SV=1 Back     alignment and function description
>sp|O34309|PPS_BACSU Putative phosphoenolpyruvate synthase OS=Bacillus subtilis (strain 168) GN=pps PE=3 SV=1 Back     alignment and function description
>sp|O27190|PPSA_METTH Probable phosphoenolpyruvate synthase OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=ppsA PE=3 SV=1 Back     alignment and function description
>sp|P46893|PPSA_STAMF Probable phosphoenolpyruvate synthase OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=ppsA PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query524
225433656 1188 PREDICTED: phosphoglucan, water dikinase 0.984 0.434 0.781 0.0
255555150 1174 chloroplast alpha-glucan water dikinase, 0.977 0.436 0.784 0.0
356534518 1190 PREDICTED: LOW QUALITY PROTEIN: phosphog 0.973 0.428 0.744 0.0
296089605 1149 unnamed protein product [Vitis vinifera] 0.910 0.415 0.715 0.0
270269270 1202 glucan/water dikinase [Solanum tuberosum 0.982 0.428 0.714 0.0
297808657 1193 hypothetical protein ARALYDRAFT_489476 [ 0.965 0.424 0.654 0.0
28973669 632 unknown protein [Arabidopsis thaliana] g 0.982 0.814 0.660 0.0
79521972 1196 phosphoglucan, water dikinase [Arabidops 0.982 0.430 0.660 0.0
53771834 1196 chloroplast alpha-glucan water dikinase 0.982 0.430 0.660 0.0
449468804 1217 PREDICTED: phosphoglucan, water dikinase 0.977 0.420 0.684 0.0
>gi|225433656|ref|XP_002265211.1| PREDICTED: phosphoglucan, water dikinase, chloroplastic-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  800 bits (2066), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/517 (78%), Positives = 449/517 (86%), Gaps = 1/517 (0%)

Query: 8    IIFQVSKLCTLLLKAVRSTLGSQGWDVLVPGAAVGKLVQVDRISPGSLSSSGDEPVILAV 67
            +IFQVSKLCTLLLKAVRSTLGSQGWDV+VPGAA G LVQV+ I PGSL SS   PVIL V
Sbjct: 673  VIFQVSKLCTLLLKAVRSTLGSQGWDVIVPGAAHGTLVQVESIIPGSLPSSVTGPVILVV 732

Query: 68   SKADGDEEVAAAGSNILGVILLQELPHLSHLGVRARQEKVVFVTCEDDEKVSDIERLAGK 127
            ++ADGDEEV AAGSNI+GV+LLQELPHLSHLGVRARQEKVVFVTCEDD+K++DI++L GK
Sbjct: 733  NRADGDEEVTAAGSNIMGVVLLQELPHLSHLGVRARQEKVVFVTCEDDDKIADIQKLNGK 792

Query: 128  YVRLEASSTCVNLNPYITHGNDGNFGLKTLSGSSSSTVLVRGVHVSSFSASKAPMSSQGV 187
             VRLEASS  VN+   ++  + G+F  K LSG+ SSTV    V+ SS+S   A  S+QG 
Sbjct: 793  CVRLEASSAGVNIFLSLSDNSTGDFPGKDLSGNGSSTVEAPKVNNSSWSTDIASGSTQGN 852

Query: 188  STGVILLADADADAMTSGAKAAACGRLASLSAVSEKVYSDQGVPASFLVPAGVVIPFGSM 247
             T V++   ADAD  TSGAKAAACGRLASL AVS+KVYSDQGVPASF VP G VIPFGSM
Sbjct: 853  HTQVVVQL-ADADTQTSGAKAAACGRLASLGAVSDKVYSDQGVPASFKVPTGAVIPFGSM 911

Query: 248  QLALEQSKCMDTFVSFLEQIETAGPEGGELDNLCCQLQELISALQPSEDIIESIERIFPA 307
            +LALEQSK ++ FVS +E+IETA  E G+LD LCCQLQELIS+LQPS++II+ +E IFP 
Sbjct: 912  ELALEQSKSIEAFVSLVEKIETATMESGDLDKLCCQLQELISSLQPSKEIIQQLEEIFPT 971

Query: 308  NAHLIVRSSANVEDLAGMSAAGLYESIPNVNPSNLRVFQNAVARVWASLYTRRAVLSRRA 367
            NA LIVRSSANVEDLAGMSAAGLYESIPNV+ SN  VF NAV+RVWASLYTRRAVLSRRA
Sbjct: 972  NARLIVRSSANVEDLAGMSAAGLYESIPNVSLSNPIVFGNAVSRVWASLYTRRAVLSRRA 1031

Query: 368  AGVSQKDATMAVLVQEMLSPDLSFVLHTLSPTDRDHNSVEAEIAPGLGETLASGTRGTPW 427
            AGV+QKDATMAVLVQE+LSPDLSFVLHTLSPTD DHNSVEAEIAPGLGETLASGTRGTPW
Sbjct: 1032 AGVAQKDATMAVLVQELLSPDLSFVLHTLSPTDHDHNSVEAEIAPGLGETLASGTRGTPW 1091

Query: 428  RLSSGKFDGLVRTQAFANFSEEMLVSGAGPADGVVIRLTVDYSKKPLTVDPIFRRQLGQR 487
            RLSSGKFDGLVRT AFANFSEE+LV GAGPADG VIRLTVDYSKKP+T+DPIFRRQLGQR
Sbjct: 1092 RLSSGKFDGLVRTLAFANFSEELLVLGAGPADGEVIRLTVDYSKKPMTIDPIFRRQLGQR 1151

Query: 488  LCSVGFFLERKFGCPQDVEGCLVGKDIYAVQTRPQPH 524
            L +VGFFLERKFGCPQDVEGC+VGKDI+ VQTRPQP 
Sbjct: 1152 LGAVGFFLERKFGCPQDVEGCVVGKDIFIVQTRPQPQ 1188

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255555150|ref|XP_002518612.1| chloroplast alpha-glucan water dikinase, putative [Ricinus communis] gi|223542211|gb|EEF43754.1| chloroplast alpha-glucan water dikinase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356534518|ref|XP_003535800.1| PREDICTED: LOW QUALITY PROTEIN: phosphoglucan, water dikinase, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|296089605|emb|CBI39424.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|270269270|gb|ACZ66259.1| glucan/water dikinase [Solanum tuberosum] Back     alignment and taxonomy information
>gi|297808657|ref|XP_002872212.1| hypothetical protein ARALYDRAFT_489476 [Arabidopsis lyrata subsp. lyrata] gi|297318049|gb|EFH48471.1| hypothetical protein ARALYDRAFT_489476 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|28973669|gb|AAO64153.1| unknown protein [Arabidopsis thaliana] gi|110737172|dbj|BAF00535.1| hypothetical protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|79521972|ref|NP_198009.3| phosphoglucan, water dikinase [Arabidopsis thaliana] gi|75136610|sp|Q6ZY51.1|PWD_ARATH RecName: Full=Phosphoglucan, water dikinase, chloroplastic; Flags: Precursor gi|46367508|emb|CAG25776.1| phosphoglucan, water dikinase [Arabidopsis thaliana] gi|332006172|gb|AED93555.1| phosphoglucan, water dikinase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|53771834|gb|AAU93516.1| chloroplast alpha-glucan water dikinase isoform 3 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449468804|ref|XP_004152111.1| PREDICTED: phosphoglucan, water dikinase, chloroplastic-like [Cucumis sativus] gi|449484653|ref|XP_004156941.1| PREDICTED: phosphoglucan, water dikinase, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query524
TAIR|locus:21510891196 PWD "PHOSPHOGLUCAN WATER DIKIN 0.982 0.430 0.648 1.4e-172
TAIR|locus:21360271278 PWD "phosphoglucan, water diki 0.133 0.054 0.432 1.3e-25
TAIR|locus:20199531399 SEX1 "STARCH EXCESS 1" [Arabid 0.146 0.055 0.415 1.7e-25
TIGR_CMR|BA_3116 868 BA_3116 "phosphoenolpyruvate s 0.515 0.311 0.295 1.2e-21
UNIPROTKB|Q723P7 867 LMOf2365_0430 "Putative phosph 0.515 0.311 0.270 7.2e-15
TIGR_CMR|DET_0554 758 DET_0554 "phosphoenolpyruvate 0.530 0.366 0.271 1.1e-10
ASPGD|ASPL0000006943 911 pdkA [Emericella nidulans (tax 0.393 0.226 0.297 2.5e-07
TIGR_CMR|SO_2644 789 SO_2644 "phosphoenolpyruvate s 0.543 0.361 0.246 1.7e-06
WB|WBGene00011893 1235 T21C9.6 [Caenorhabditis elegan 0.351 0.148 0.281 2.3e-06
UNIPROTKB|Q9KKW3 803 VC_A0987 "Phosphoenolpyruvate 0.547 0.357 0.257 3.6e-06
TAIR|locus:2151089 PWD "PHOSPHOGLUCAN WATER DIKINASE" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1677 (595.4 bits), Expect = 1.4e-172, P = 1.4e-172
 Identities = 342/527 (64%), Positives = 405/527 (76%)

Query:     8 IIFQVSKLCTLLLKAVRSTLGSQGWDVLVPGAAVGKLVQVDRISPGSLSSSGDEPVILAV 67
             IIFQ+SKLCT+LLKAVR++LGS+GWDV+VPG+  G LVQV+ I PGSL ++   P+IL V
Sbjct:   670 IIFQISKLCTVLLKAVRNSLGSEGWDVVVPGSTSGTLVQVESIVPGSLPATSGGPIILLV 729

Query:    68 SKADGDEEVAAAGSNILGVILLQELPHLSHLGVRARQEKVVFVTCEDDEKVSDIERLAGK 127
             +KADGDEEV+AA  NI GV+LLQELPHLSHLGVRARQEK+VFVTC+DD+KV+DI RL GK
Sbjct:   730 NKADGDEEVSAANGNIAGVMLLQELPHLSHLGVRARQEKIVFVTCDDDDKVADIRRLVGK 789

Query:   128 YVRLEASSTCVNL-----------NPYITHGNDGNFXXXXXXXXXXXXXXXXXXHVXXXX 176
             +VRLEAS + VNL               T   D N                         
Sbjct:   790 FVRLEASPSHVNLILSTEGRSRTSKSSATKKTDKNSLSKKKTDKKSLSIDDEESKPGSSS 849

Query:   177 XXXXXXXXQGVSTGVILLADADADAMTSGAKAAACGRLASLSAVSEKVYSDQGVPASFLV 236
                     + + +G I+ A ADAD  TSG+K+AACG LASL+  S KV+S+ GVPASF V
Sbjct:   850 SNSLLYSSKDIPSGGII-ALADADVPTSGSKSAACGLLASLAEASSKVHSEHGVPASFKV 908

Query:   237 PAGVVIPFGSMQLALEQSKCMDTFVSFLEQIETAGPEGGELDNLCCQLQELISALQPSED 296
             P GVVIPFGSM+LAL+Q+   + F S LE++ETA PEGGELD++C Q+ E++  LQ  ++
Sbjct:   909 PTGVVIPFGSMELALKQNNSEEKFASLLEKLETARPEGGELDDICDQIHEVMKTLQVPKE 968

Query:   297 IIESIERIFPANAHLIVRSSANVEDLAGMSAAGLYESIPNVNPSNLRVFQNAVARVWASL 356
              I SI + F  +A LIVRSSANVEDLAGMSAAGLYESIPNV+PS+  VF ++V +VWASL
Sbjct:   969 TINSISKAFLKDARLIVRSSANVEDLAGMSAAGLYESIPNVSPSDPLVFSDSVCQVWASL 1028

Query:   357 YTRRAVLSRRAAGVSQKDATMAVLVQEMLSPDLSFVLHTLSPTDRDHNSVEAEIAPGLGE 416
             YTRRAVLSRRAAGVSQ++A+MAVLVQEMLSPDLSFVLHT+SP D D N VEAEIAPGLGE
Sbjct:  1029 YTRRAVLSRRAAGVSQREASMAVLVQEMLSPDLSFVLHTVSPADPDSNLVEAEIAPGLGE 1088

Query:   417 TLASGTRGTPWRLSSGKFDGLVRTQAFANFSEEMLVSGAGPADGVVIRLTVDYSKKPLTV 476
             TLASGTRGTPWRL+SGK DG+V+T AFANFSEE+LVSG GPADG  +RLTVDYSKK LTV
Sbjct:  1089 TLASGTRGTPWRLASGKLDGIVQTLAFANFSEELLVSGTGPADGKYVRLTVDYSKKRLTV 1148

Query:   477 DPIFRRQLGQRLCSVGFFLERKFGCPQDVEGCLVGKDIYAVQTRPQP 523
             D +FR+QLGQRL SVGFFLER FGC QDVEGCLVG+D+Y VQ+RPQP
Sbjct:  1149 DSVFRQQLGQRLGSVGFFLERNFGCAQDVEGCLVGEDVYIVQSRPQP 1195
GO:0003824 "catalytic activity" evidence=IEA;ISS
GO:0005524 "ATP binding" evidence=IEA
GO:0005975 "carbohydrate metabolic process" evidence=ISS
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0016301 "kinase activity" evidence=IEA
GO:0016310 "phosphorylation" evidence=IEA
GO:0030246 "carbohydrate binding" evidence=IEA
GO:2001070 "starch binding" evidence=IEA
GO:0005983 "starch catabolic process" evidence=TAS
GO:0009536 "plastid" evidence=IDA
GO:0051752 "phosphoglucan, water dikinase activity" evidence=ISS;IDA
GO:0005982 "starch metabolic process" evidence=RCA;IMP
GO:0019200 "carbohydrate kinase activity" evidence=IDA
GO:0046777 "protein autophosphorylation" evidence=IDA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0000272 "polysaccharide catabolic process" evidence=RCA
GO:0009664 "plant-type cell wall organization" evidence=RCA
GO:0019252 "starch biosynthetic process" evidence=RCA
TAIR|locus:2136027 PWD "phosphoglucan, water dikinase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2019953 SEX1 "STARCH EXCESS 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|BA_3116 BA_3116 "phosphoenolpyruvate synthase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
UNIPROTKB|Q723P7 LMOf2365_0430 "Putative phosphoenolpyruvate synthase" [Listeria monocytogenes serotype 4b str. F2365 (taxid:265669)] Back     alignment and assigned GO terms
TIGR_CMR|DET_0554 DET_0554 "phosphoenolpyruvate synthase" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
ASPGD|ASPL0000006943 pdkA [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
TIGR_CMR|SO_2644 SO_2644 "phosphoenolpyruvate synthase" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
WB|WBGene00011893 T21C9.6 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KKW3 VC_A0987 "Phosphoenolpyruvate synthase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.7.9LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00033526001
SubName- Full=Chromosome chr5 scaffold_67, whole genome shotgun sequence; (1117 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00019399001
SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (585 aa)
   •  • 0.588
GSVIVG00018076001
SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (378 aa)
   •  • 0.471
GSVIVG00015177001
SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (583 aa)
   •  • 0.416

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query524
pfam01326324 pfam01326, PPDK_N, Pyruvate phosphate dikinase, PE 2e-53
PRK06241 871 PRK06241, PRK06241, phosphoenolpyruvate synthase; 2e-38
TIGR01418 782 TIGR01418, PEP_synth, phosphoenolpyruvate synthase 5e-18
COG0574 740 COG0574, PpsA, Phosphoenolpyruvate synthase/pyruva 1e-14
PRK06464 795 PRK06464, PRK06464, phosphoenolpyruvate synthase; 9e-13
PRK05849 783 PRK05849, PRK05849, hypothetical protein; Provisio 4e-08
>gnl|CDD|216434 pfam01326, PPDK_N, Pyruvate phosphate dikinase, PEP/pyruvate binding domain Back     alignment and domain information 
 Score =  183 bits (465), Expect = 2e-53
 Identities = 99/330 (30%), Positives = 149/330 (45%), Gaps = 35/330 (10%)

Query: 198 DADAMTSGAKAAACGRLASLSAVSEKVYSDQGVPASFLVPAGVVIPFGSMQLALEQSKCM 257
             D    G KAA    LA             G+P    VP G VI   + +  LE++   
Sbjct: 1   ADDVDLVGGKAANLAELARA-----------GLP----VPPGFVITTEAFRRFLEENGLR 45

Query: 258 DTFVSFLEQIETAGPEGGELDNLCCQLQELISALQPSEDIIESIE---RIFPANAHLIVR 314
           +  +S L  +  +      LD     ++ELI      ++++E++        A+A + VR
Sbjct: 46  EEILSLLRPLLLSDRS--SLDAASPGIRELILNAPLPDELVEALAAALDELGADAPVAVR 103

Query: 315 SSANVEDLAGMSAAGLYESIPNVNPSNLRVFQNAVARVWASLYTRRAVLSRRAAGVSQKD 374
           SSA  EDL   S AG Y++  NVN   L    +A+  VWASL++ RA+  R+A G+  ++
Sbjct: 104 SSATAEDLPEASFAGQYDTYLNVN--GLEQLLDAIKAVWASLFSPRALAYRQARGIDDEE 161

Query: 375 ATMAVLVQEMLSPDLSFVLHTLSPTDRDHNSVEAEIAPGLGETLASGTRGTPWRLSSGKF 434
             MAV+VQ M+  D S V  T  P+  D + V  E   GLGE + SG   TP      + 
Sbjct: 162 VGMAVVVQPMVDADASGVAFTRDPSTGDRDLVVIEAVWGLGEAVVSGEV-TPDTFVVSRD 220

Query: 435 DGLVRTQAFANFSEEMLVSGAGPADGVVIRLTVDYSKKPLTVDPIFRR--QLGQRLCSVG 492
           DG VR +        +++ G G    V + +  +    P+  D   +    L +R     
Sbjct: 221 DGTVRERELGQKEVALVLEGGGT---VEVPVPEERRSAPVLTDAQLQELADLAKR----- 272

Query: 493 FFLERKFGCPQDVEGCLVGKDIYAVQTRPQ 522
             LE  FG PQD+E  + G  +Y +Q RP 
Sbjct: 273 --LEAHFGSPQDIEWAIDGGRLYILQARPI 300

This enzyme catalyzes the reversible conversion of ATP to AMP, pyrophosphate and phosphoenolpyruvate (PEP). Length = 324
>gnl|CDD|235751 PRK06241, PRK06241, phosphoenolpyruvate synthase; Validated Back     alignment and domain information
>gnl|CDD|233405 TIGR01418, PEP_synth, phosphoenolpyruvate synthase Back     alignment and domain information
>gnl|CDD|223647 COG0574, PpsA, Phosphoenolpyruvate synthase/pyruvate phosphate dikinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|235809 PRK06464, PRK06464, phosphoenolpyruvate synthase; Validated Back     alignment and domain information
>gnl|CDD|235623 PRK05849, PRK05849, hypothetical protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 524
PRK06464 795 phosphoenolpyruvate synthase; Validated 100.0
PRK06241 871 phosphoenolpyruvate synthase; Validated 100.0
TIGR01418 782 PEP_synth phosphoenolpyruvate synthase. Also calle 100.0
PF01326327 PPDK_N: Pyruvate phosphate dikinase, PEP/pyruvate 100.0
PRK05878 530 pyruvate phosphate dikinase; Provisional 100.0
COG0574 740 PpsA Phosphoenolpyruvate synthase/pyruvate phospha 100.0
TIGR01828 856 pyru_phos_dikin pyruvate, phosphate dikinase. This 100.0
PRK09279 879 pyruvate phosphate dikinase; Provisional 100.0
PRK05849 783 hypothetical protein; Provisional 100.0
PF0039180 PEP-utilizers: PEP-utilising enzyme, mobile domain 97.12
PRK08296603 hypothetical protein; Provisional 96.67
PRK05849783 hypothetical protein; Provisional 96.17
PRK06241871 phosphoenolpyruvate synthase; Validated 95.81
PRK05878530 pyruvate phosphate dikinase; Provisional 95.7
PRK06354590 pyruvate kinase; Provisional 95.6
PRK09279879 pyruvate phosphate dikinase; Provisional 95.11
TIGR01418782 PEP_synth phosphoenolpyruvate synthase. Also calle 95.02
TIGR01828856 pyru_phos_dikin pyruvate, phosphate dikinase. This 94.95
PRK05865854 hypothetical protein; Provisional 94.53
PRK06464795 phosphoenolpyruvate synthase; Validated 94.15
COG3848111 Phosphohistidine swiveling domain [Signal transduc 94.0
PRK11377473 dihydroxyacetone kinase subunit M; Provisional 92.41
PRK11177575 phosphoenolpyruvate-protein phosphotransferase; Pr 91.74
PRK11061748 fused phosphoenolpyruvate-protein phosphotransfera 91.27
PRK03955131 hypothetical protein; Reviewed 90.76
TIGR01417565 PTS_I_fam phosphoenolpyruvate-protein phosphotrans 89.61
COG1080574 PtsA Phosphoenolpyruvate-protein kinase (PTS syste 86.77
COG0574740 PpsA Phosphoenolpyruvate synthase/pyruvate phospha 83.49
>PRK06464 phosphoenolpyruvate synthase; Validated Back     alignment and domain information 
Probab=100.00  E-value=5.4e-62  Score=550.42  Aligned_cols=312  Identities=25%  Similarity=0.304  Sum_probs=273.2

Q ss_pred             ceEEEEccccc-CCccccChhhhchHHHHhhhccccccccCCCCCCccccCCeEEECHHHHHHHHHhcCChhHHHHHHHH
Q 009825          188 STGVILLADAD-ADAMTSGAKAAACGRLASLSAVSEKVYSDQGVPASFLVPAGVVIPFGSMQLALEQSKCMDTFVSFLEQ  266 (524)
Q Consensus       188 ~~~~~~l~~~~-~~~~~vG~KAanL~~L~~~~~~~~~~~~~~~~p~~~~VP~gfvIpf~~f~~~l~~~~~~~~i~~ll~~  266 (524)
                      ..+++||++.. .+...+||||+||++|.+..  +.         .|++||+|||||+++|++||+.+++.+.+..++..
T Consensus         4 ~~~i~~l~~~~~~~~~~vGgKaa~L~~L~~~~--~~---------~g~pVP~gfvIt~~af~~fl~~~~l~~~i~~~l~~   72 (795)
T PRK06464          4 MKYVLWFEELGMEDVPLVGGKNASLGEMISNL--SG---------AGVPVPPGFATTAEAYRYFLEQTGLNEKIYELLDG   72 (795)
T ss_pred             CceeeehhHcCcccccccChHHHHHHHHHhhh--hc---------cCCCCCCeEEECHHHHHHHHHhCChHHHHHHHHhh
Confidence            35788998874 57888999999999998731  11         58999999999999999999999999999888877


Q ss_pred             hhhcCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHhCC------CCcceEEccCCCccCccCCcccccccccCcCCCC
Q 009825          267 IETAGPEGGELDNLCCQLQELISALQPSEDIIESIERIFP------ANAHLIVRSSANVEDLAGMSAAGLYESIPNVNPS  340 (524)
Q Consensus       267 l~~~~~~~~~l~~~~~~ir~~I~~~~~p~~l~~~l~~~~~------~~~~vaVRSSa~~ED~~~~S~AG~~~S~lnv~~~  340 (524)
                      ++.  .+...+++.+++||++|.+.++|+++.++|.+++.      ++.+|+||||++.||++++||||||+|++||.  
T Consensus        73 ~~~--~d~~~l~~~~~~ir~~i~~~~~P~~l~~~l~~a~~~l~~~~g~~~vaVRSSa~~ED~~~~SfAGq~~t~l~v~--  148 (795)
T PRK06464         73 LDV--DDVDALAKAGAQIRQLIIDTPFPPDLEQEIREAYAKLSAGYGEASVAVRSSATAEDLPDASFAGQQETFLNVR--  148 (795)
T ss_pred             cCc--CCHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcccCCceEEEECCCcccCCCCCCCCCccceecCCC--
Confidence            753  46778999999999999999999999999998763      14689999999999999999999999999998  


Q ss_pred             cHHHHHHHHHHHHHhcCChhHHHHHHHhCCCCcCCceeEEEEeecCCC--eEEEEEecCCCCCCCCeEEEEeccCCCccc
Q 009825          341 NLRVFQNAVARVWASLYTRRAVLSRRAAGVSQKDATMAVLVQEMLSPD--LSFVLHTLSPTDRDHNSVEAEIAPGLGETL  418 (524)
Q Consensus       341 ~~~~l~~AIk~VWAS~~~~rA~~yR~~~Gi~~~~~~MAVLVQ~mV~a~--~SGVl~T~nP~~g~~~~i~ie~~~GLGe~l  418 (524)
                      +.+++++|||+||||+||+||+.||+++|++++++.|||+||+||+++  +|||+||+||.+++.++++||++|||||++
T Consensus       149 ~~~~l~~AIk~v~aS~~~~rA~~YR~~~gi~~~~~~mAVlVQ~Mv~a~~~~SGV~fT~dP~~g~~~~~~I~a~~GlGe~v  228 (795)
T PRK06464        149 GIDDVLEAVKECFASLFTDRAISYRVHQGFDHFKVALSAGVQKMVRSDLAASGVMFTLDTESGFRDVVFITASWGLGEMV  228 (795)
T ss_pred             CHHHHHHHHHHHHHccCCHHHHHHHHHcCCCchhcceeEEEEEccCCCcCceEEEEecCCCCCCCCeEEEEEccCCCccc
Confidence            578999999999999999999999999999999999999999999999  999999999999999999999999999999


Q ss_pred             cccccCCceeEEecccCCc-----eeEEeecccceeEEeeccCCCCC-cEEEEeecC--CCCCCCCCHHHHHHHHHHHHH
Q 009825          419 ASGTRGTPWRLSSGKFDGL-----VRTQAFANFSEEMLVSGAGPADG-VVIRLTVDY--SKKPLTVDPIFRRQLGQRLCS  490 (524)
Q Consensus       419 V~G~~g~p~~~~~~k~~~~-----v~~~~~~~~~~~l~~~~~~~~~g-~~~~~~v~~--~~~~l~~d~~~r~~~~~~La~  490 (524)
                      |+|.. +|++|.++|.++.     +....++.|...+...   +..+ +++.++++.  ..++.++|+     .+++|++
T Consensus       229 VsG~v-~pd~~~v~~~~~~~~~~~i~~~~i~~K~~~~~~~---~~~~~~~~~~~~~~~~~~~~~L~~~-----~l~~La~  299 (795)
T PRK06464        229 VQGAV-NPDEFYVHKPTLKAGKPAIVRRTLGSKKIKMVYD---DGGEHGVKTVDVPEEERNRFSLTDE-----EVLELAK  299 (795)
T ss_pred             ccCCc-cCeEEEEecccccccccceeeeeccccceeeeec---cCCCCceeEEeCCHHHhhccCCCHH-----HHHHHHH
Confidence            99985 8999999998765     7778888888887752   2222 255555543  344555554     4799999


Q ss_pred             HHHHHHHhhCCCEEEEEEEEC--CeEEEEeeeccc
Q 009825          491 VGFFLERKFGCPQDVEGCLVG--KDIYAVQTRPQP  523 (524)
Q Consensus       491 ~a~~lE~~fg~pqDIEw~i~~--~~l~IlQ~RP~~  523 (524)
                      ++.+||++||+|||||||+++  ++|||||+||++
T Consensus       300 l~~~lE~~fg~pqDIEWai~~~~g~l~ILQaRPit  334 (795)
T PRK06464        300 QAVIIEKHYGRPMDIEWAKDGDDGKLYIVQARPET  334 (795)
T ss_pred             HHHHHHHHhCCCceeEEEEECCCCcEEEEEeeccc
Confidence            999999999999999999998  789999999987

>PRK06241 phosphoenolpyruvate synthase; Validated Back     alignment and domain information
>TIGR01418 PEP_synth phosphoenolpyruvate synthase Back     alignment and domain information
>PF01326 PPDK_N: Pyruvate phosphate dikinase, PEP/pyruvate binding domain; InterPro: IPR002192 This enzyme catalyses the reversible conversion of ATP to AMP, pyrophosphate and phosphoenolpyruvate (PEP) [] Back     alignment and domain information
>PRK05878 pyruvate phosphate dikinase; Provisional Back     alignment and domain information
>COG0574 PpsA Phosphoenolpyruvate synthase/pyruvate phosphate dikinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR01828 pyru_phos_dikin pyruvate, phosphate dikinase Back     alignment and domain information
>PRK09279 pyruvate phosphate dikinase; Provisional Back     alignment and domain information
>PRK05849 hypothetical protein; Provisional Back     alignment and domain information
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ] Back     alignment and domain information
>PRK08296 hypothetical protein; Provisional Back     alignment and domain information
>PRK05849 hypothetical protein; Provisional Back     alignment and domain information
>PRK06241 phosphoenolpyruvate synthase; Validated Back     alignment and domain information
>PRK05878 pyruvate phosphate dikinase; Provisional Back     alignment and domain information
>PRK06354 pyruvate kinase; Provisional Back     alignment and domain information
>PRK09279 pyruvate phosphate dikinase; Provisional Back     alignment and domain information
>TIGR01418 PEP_synth phosphoenolpyruvate synthase Back     alignment and domain information
>TIGR01828 pyru_phos_dikin pyruvate, phosphate dikinase Back     alignment and domain information
>PRK05865 hypothetical protein; Provisional Back     alignment and domain information
>PRK06464 phosphoenolpyruvate synthase; Validated Back     alignment and domain information
>COG3848 Phosphohistidine swiveling domain [Signal transduction mechanisms] Back     alignment and domain information
>PRK11377 dihydroxyacetone kinase subunit M; Provisional Back     alignment and domain information
>PRK11177 phosphoenolpyruvate-protein phosphotransferase; Provisional Back     alignment and domain information
>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional Back     alignment and domain information
>PRK03955 hypothetical protein; Reviewed Back     alignment and domain information
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase Back     alignment and domain information
>COG1080 PtsA Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG0574 PpsA Phosphoenolpyruvate synthase/pyruvate phosphate dikinase [Carbohydrate transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query524
2ols_A 794 The Crystal Structure Of The Phosphoenolpyruvate Sy 6e-08
>pdb|2OLS|A Chain A, The Crystal Structure Of The Phosphoenolpyruvate Synthase From Neisseria Meningitidis Length = 794 Back     alignment and structure 
Iteration: 1

 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 97/230 (42%), Gaps = 25/230 (10%)
Query: 307 ANAHLIVRSSANVEDLAGMSAAGLYESIPNVNPSNLRVFQNAVARVWASLYTRRAVLSRR 366
           A+  + VRSSA  EDL   S AG  E+  N+N   L   + A+  V+ASLY  RA+  R 
Sbjct: 118 ADISVAVRSSATAEDLPDASFAGQQETFLNIN--GLDNVKEAMHHVFASLYNDRAISYRV 175
Query: 367 AAGVSQKDATMAVLVQEMLSPD--LSFVLHTLSPTDRDHNSVEAEIAPGLGETLASGTRG 424
             G       ++  VQ M+  D   S V+ TL         V    + GLGE +  G   
Sbjct: 176 HKGFEHDIVALSAGVQRMVRSDSGASGVMFTLDTESGYDQVVFVTSSYGLGENVVQGAVN 235
Query: 425 -------TPWRLSSGKFDGLVRTQAFANFSEEMLVSGAGPADGVVIRLTV---DYSKKPL 474
                   P  L +GK   L +T    +   +M+ +    A   V  + V   D ++  +
Sbjct: 236 PDEFYVFKP-TLKAGKPAILRKTMGSKHI--KMIFTDKAEAGKSVTNVDVPEEDRNRFSI 292
Query: 475 TVDPIFRRQLGQRLCSVGFFLERKFGCPQDVEGCLVGKD--IYAVQTRPQ 522
           T + I        L      +E+ +G P D+E    G D  +Y +Q RP+
Sbjct: 293 TDEEI------TELAHYALTIEKHYGRPMDIEWGRDGLDGKLYILQARPE 336

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query524
2ols_A 794 Phosphoenolpyruvate synthase; MC structural genomi 5e-33
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-05
>2ols_A Phosphoenolpyruvate synthase; MC structural genomics, PSI-2, protein structure initiative, M center for structural genomics, transferase; 2.40A {Neisseria meningitidis} Length = 794 Back     alignment and structure
 Score =  132 bits (334), Expect = 5e-33
 Identities = 75/343 (21%), Positives = 130/343 (37%), Gaps = 40/343 (11%)

Query: 199 ADAMTSGAKAAACGRLASLSAVSEKVYSDQGVPASFLVPAGVVIPFGSMQLALEQSKCMD 258
            D    G K A+ G + S         +++GV     VP G      + +  L  +   +
Sbjct: 15  TDVERVGGKNASLGEMISQL-------TEKGVR----VPGGFATTAEAYRAFLAHNGLSE 63

Query: 259 TFVSFLEQIETAGPEGGELDNLCCQLQELISALQPSEDIIESI--------ERIFPANAH 310
              + L +++       EL  +  ++++ I      E +   I             A+  
Sbjct: 64  RISAALAKLDVEDVA--ELARVGKEIRQWILDTPFPEQLDAEIEAAWNKMVADAGGADIS 121

Query: 311 LIVRSSANVEDLAGMSAAGLYESIPNVNPSNLRVFQNAVARVWASLYTRRAVLSRRAAGV 370
           + VRSSA  EDL   S AG  E+  N+N  +    + A+  V+ASLY  RA+  R   G 
Sbjct: 122 VAVRSSATAEDLPDASFAGQQETFLNINGLD--NVKEAMHHVFASLYNDRAISYRVHKGF 179

Query: 371 SQKDATMAVLVQEMLSPDL--SFVLHTLSPTDRDHNSVEAEIAPGLGETLASGTRGTP-- 426
                 ++  VQ M+  D   S V+ TL         V    + GLGE +  G    P  
Sbjct: 180 EHDIVALSAGVQRMVRSDSGASGVMFTLDTESGYDQVVFVTSSYGLGENVVQGA-VNPDE 238

Query: 427 ---WRLSSGKFDGLVRTQAFANFSEEMLVSGAGPADGVVIRLTV--DYSKKPLTVDPIFR 481
              ++ +       +  +   +   +M+ +    A   V  + V  +   +    D    
Sbjct: 239 FYVFKPTLKAGKPAILRKTMGSKHIKMIFTDKAEAGKSVTNVDVPEEDRNRFSITDE--- 295

Query: 482 RQLGQRLCSVGFFLERKFGCPQDVEGCLVGKD--IYAVQTRPQ 522
            ++   L      +E+ +G P D+E    G D  +Y +Q RP+
Sbjct: 296 -EI-TELAHYALTIEKHYGRPMDIEWGRDGLDGKLYILQARPE 336
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query524
2ols_A 794 Phosphoenolpyruvate synthase; MC structural genomi 100.0
1vbg_A 876 Pyruvate,orthophosphate dikinase; transferase, mai 100.0
1kbl_A 873 PPDK, pyruvate phosphate dikinase; transferase, ph 100.0
2x0s_A 913 Pyruvate phosphate dikinase; transferase, tropical 100.0
1h6z_A 913 Pyruvate phosphate dikinase; transferase, tropical 100.0
3t05_A606 Pyruvate kinase, PK; tetramer, glycolysis, transfe 96.85
2e28_A587 Pyruvate kinase, PK; allosteric, transferase; 2.40 96.2
2ols_A794 Phosphoenolpyruvate synthase; MC structural genomi 95.94
1h6z_A913 Pyruvate phosphate dikinase; transferase, tropical 95.45
1kbl_A873 PPDK, pyruvate phosphate dikinase; transferase, ph 94.46
1zym_A258 Enzyme I; phosphotransferase; 2.50A {Escherichia c 94.32
1vbg_A876 Pyruvate,orthophosphate dikinase; transferase, mai 94.03
2x0s_A913 Pyruvate phosphate dikinase; transferase, tropical 93.71
2wqd_A572 Phosphoenolpyruvate-protein phosphotransferase; ki 92.52
2hwg_A575 Phosphoenolpyruvate-protein phosphotransferase; en 92.36
>2ols_A Phosphoenolpyruvate synthase; MC structural genomics, PSI-2, protein structure initiative, M center for structural genomics, transferase; 2.40A {Neisseria meningitidis} Back     alignment and structure
Probab=100.00  E-value=7e-60  Score=534.72  Aligned_cols=313  Identities=25%  Similarity=0.313  Sum_probs=265.3

Q ss_pred             eEEEEccccc-CCccccChhhhchHHHHhhhccccccccCCCCCCccccCCeEEECHHHHHHHHHhcCChhHHHHHHHHh
Q 009825          189 TGVILLADAD-ADAMTSGAKAAACGRLASLSAVSEKVYSDQGVPASFLVPAGVVIPFGSMQLALEQSKCMDTFVSFLEQI  267 (524)
Q Consensus       189 ~~~~~l~~~~-~~~~~vG~KAanL~~L~~~~~~~~~~~~~~~~p~~~~VP~gfvIpf~~f~~~l~~~~~~~~i~~ll~~l  267 (524)
                      .+++||++.. .+...+|||++||++|.+..  .+         .|++||+||+||+++|++|++++++++.+.+.++.+
T Consensus         4 ~~v~~~~~~~~~~~~~vGGK~anL~em~~~L--~~---------~GlpVP~GF~Itt~a~~~fl~~~~l~~~i~~~l~~l   72 (794)
T 2ols_A            4 NYVIWFENLRMTDVERVGGKNASLGEMISQL--TE---------KGVRVPGGFATTAEAYRAFLAHNGLSERISAALAKL   72 (794)
T ss_dssp             CCEEEGGGCCGGGHHHHHHHHHHHHHHHHHH--GG---------GTCCCCCEEEECHHHHHHHHTGGGHHHHHHHHHHSC
T ss_pred             CEEEECCcCChhhcccCCHHHHHHHHHHHHH--hh---------CCCCCCCEEEECHHHHHHHHHhCChHHHHHHHHHhh
Confidence            5799998873 68899999999999997631  11         679999999999999999999999999998888877


Q ss_pred             hhcCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHhCC--------CCcceEEccCCCccCccCCcccccccccCcCCC
Q 009825          268 ETAGPEGGELDNLCCQLQELISALQPSEDIIESIERIFP--------ANAHLIVRSSANVEDLAGMSAAGLYESIPNVNP  339 (524)
Q Consensus       268 ~~~~~~~~~l~~~~~~ir~~I~~~~~p~~l~~~l~~~~~--------~~~~vaVRSSa~~ED~~~~S~AG~~~S~lnv~~  339 (524)
                      +.  .+...+.+.+.++|++|.+.++|+++.++|.+++.        .+.+|+||||++.||++++||||+|+|++|+. 
T Consensus        73 ~~--~~~~~l~~~~~~ir~~I~~~~~p~~l~~~i~~a~~~l~~~~g~~~~~vaVRSSa~~EDl~~~sfAG~~~t~l~v~-  149 (794)
T 2ols_A           73 DV--EDVAELARVGKEIRQWILDTPFPEQLDAEIEAAWNKMVADAGGADISVAVRSSATAEDLPDASFAGQQETFLNIN-  149 (794)
T ss_dssp             CT--TSHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTSSCCCCEEEEEEECC-------CCSCSCEEEEEC-
T ss_pred             cc--cCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccccccCceEEEecCCChhhhhhhhhhhhhhhhhcCC-
Confidence            64  35677889999999999999999999999876542        26789999999999999999999999999997 


Q ss_pred             CcHHHHHHHHHHHHHhcCChhHHHHHHHhCCCCcCCceeEEEEeecCCC--eEEEEEecCCCCCCCCeEEEEeccCCCcc
Q 009825          340 SNLRVFQNAVARVWASLYTRRAVLSRRAAGVSQKDATMAVLVQEMLSPD--LSFVLHTLSPTDRDHNSVEAEIAPGLGET  417 (524)
Q Consensus       340 ~~~~~l~~AIk~VWAS~~~~rA~~yR~~~Gi~~~~~~MAVLVQ~mV~a~--~SGVl~T~nP~~g~~~~i~ie~~~GLGe~  417 (524)
                       +.+++++|||+||||+||+||+.||+++|++++++.|||+||+||+++  .|||+||+||.+|+++.++|+++|||||.
T Consensus       150 -g~~~l~~Aik~v~aS~~s~RAi~YR~~~gi~~~~~~mAV~VQ~MV~~~~s~sGV~FT~dP~tG~~~~~~I~a~~GlGE~  228 (794)
T 2ols_A          150 -GLDNVKEAMHHVFASLYNDRAISYRVHKGFEHDIVALSAGVQRMVRSDSGASGVMFTLDTESGYDQVVFVTSSYGLGEN  228 (794)
T ss_dssp             -SHHHHHHHHHHHHHHTTCHHHHHHHHHHCC--CCCCEEEEEEECCCTTSSEEEEEESSCTTTCCCSEEEEEEEESCTHH
T ss_pred             -CHHHHHHHHHHHHHhcCCHHHHHHHHHcCCChHHhCceEEEEEcccCCceeEEEEEeCCCCCCCCceEEEEeccCCCce
Confidence             689999999999999999999999999999999999999999999999  99999999999999999999999999999


Q ss_pred             ccccccCCceeEEecc-----cCCceeEEeecccceeEEeeccCCCCCc-EEEEeecC--CCCCCCCCHHHHHHHHHHHH
Q 009825          418 LASGTRGTPWRLSSGK-----FDGLVRTQAFANFSEEMLVSGAGPADGV-VIRLTVDY--SKKPLTVDPIFRRQLGQRLC  489 (524)
Q Consensus       418 lV~G~~g~p~~~~~~k-----~~~~v~~~~~~~~~~~l~~~~~~~~~g~-~~~~~v~~--~~~~l~~d~~~r~~~~~~La  489 (524)
                      +|+|.+ +|+.|.++|     .++.+....+++|...+.... ...+|+ +..++++.  ...++++|+.     +.+|+
T Consensus       229 vV~G~~-tpd~~~v~kp~l~~~~~~i~~~~~~~k~~~~~~~~-~~~~g~~~~~~~~p~~~~~~~~L~d~~-----~~~L~  301 (794)
T 2ols_A          229 VVQGAV-NPDEFYVFKPTLKAGKPAILRKTMGSKHIKMIFTD-KAEAGKSVTNVDVPEEDRNRFSITDEE-----ITELA  301 (794)
T ss_dssp             HHHTSS-CCEEEEEEHHHHHTTSCCEEEEECCCCCEEEEECS-CCSSSTTEEEEECCHHHHTSCSSCHHH-----HHHHH
T ss_pred             eecCCc-CCcEEEEeccccccCCcceeeeeccccceeEEecc-cccCCCeeEEEeCCHHHhcCCCCCHHH-----HHHHH
Confidence            999997 899999998     456777888888888887521 112344 66666653  3556676654     68999


Q ss_pred             HHHHHHHHhhCCCEEEEEEEECC--eEEEEeeeccc
Q 009825          490 SVGFFLERKFGCPQDVEGCLVGK--DIYAVQTRPQP  523 (524)
Q Consensus       490 ~~a~~lE~~fg~pqDIEw~i~~~--~l~IlQ~RP~~  523 (524)
                      +++..||++||.||||||+++++  +|||||+||++
T Consensus       302 ~~~~~lE~~yg~pqDIEwai~~~~g~L~iLQaRP~t  337 (794)
T 2ols_A          302 HYALTIEKHYGRPMDIEWGRDGLDGKLYILQARPET  337 (794)
T ss_dssp             HHHHHHHHHHTSCEEEEEEECTTTCCEEEEEEEECC
T ss_pred             HHHHHHHHHcCCCeEEEEEEECCCCeEEEEEecCcc
Confidence            99999999999999999999987  79999999986
>1vbg_A Pyruvate,orthophosphate dikinase; transferase, maize, riken structural genomics/proteomics INI RSGI, structural genomics; 2.30A {Zea mays} SCOP: c.1.12.2 c.8.1.1 d.142.1.5 PDB: 1vbh_A* Back     alignment and structure
>1kbl_A PPDK, pyruvate phosphate dikinase; transferase, phosphotransferase; 1.94A {Clostridium symbiosum} SCOP: c.1.12.2 c.8.1.1 d.142.1.5 PDB: 1kc7_A* 1dik_A 1ggo_A 1jde_A 2dik_A 2r82_A 2fm4_A Back     alignment and structure
>2x0s_A Pyruvate phosphate dikinase; transferase, tropical parasite; 3.00A {Trypanosoma brucei} Back     alignment and structure
>1h6z_A Pyruvate phosphate dikinase; transferase, tropical parasite, trypanosome; 3.00A {Trypanosoma brucei} PDB: 2x0s_A Back     alignment and structure
>3t05_A Pyruvate kinase, PK; tetramer, glycolysis, transferase; 3.05A {Staphylococcus aureus subsp} PDB: 3t07_A* 3t0t_A* Back     alignment and structure
>2e28_A Pyruvate kinase, PK; allosteric, transferase; 2.40A {Geobacillus stearothermophilus} Back     alignment and structure
>2ols_A Phosphoenolpyruvate synthase; MC structural genomics, PSI-2, protein structure initiative, M center for structural genomics, transferase; 2.40A {Neisseria meningitidis} Back     alignment and structure
>1h6z_A Pyruvate phosphate dikinase; transferase, tropical parasite, trypanosome; 3.00A {Trypanosoma brucei} PDB: 2x0s_A Back     alignment and structure
>1kbl_A PPDK, pyruvate phosphate dikinase; transferase, phosphotransferase; 1.94A {Clostridium symbiosum} SCOP: c.1.12.2 c.8.1.1 d.142.1.5 PDB: 1kc7_A* 1dik_A 1ggo_A 1jde_A 2dik_A 2r82_A 2fm4_A Back     alignment and structure
>1zym_A Enzyme I; phosphotransferase; 2.50A {Escherichia coli} SCOP: a.60.10.1 c.8.1.2 PDB: 1eza_A 1ezb_A 1ezc_A 1ezd_A 2eza_A 2ezb_A 2ezc_A 3ezb_A 3eze_A 3eza_A Back     alignment and structure
>1vbg_A Pyruvate,orthophosphate dikinase; transferase, maize, riken structural genomics/proteomics INI RSGI, structural genomics; 2.30A {Zea mays} SCOP: c.1.12.2 c.8.1.1 d.142.1.5 PDB: 1vbh_A* Back     alignment and structure
>2x0s_A Pyruvate phosphate dikinase; transferase, tropical parasite; 3.00A {Trypanosoma brucei} Back     alignment and structure
>2wqd_A Phosphoenolpyruvate-protein phosphotransferase; kinase, cytoplasm, transport, magnesium, PEP- utilising enzyme, phosphotransferase system; 2.40A {Staphylococcus aureus} PDB: 2hro_A Back     alignment and structure
>2hwg_A Phosphoenolpyruvate-protein phosphotransferase; enzyme I, phosphoenolpyruvate:sugar phosphotransferase system, PTS; HET: NEP; 2.70A {Escherichia coli} PDB: 2kx9_A 2xdf_A 2l5h_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 524
d1kbla3375 d.142.1.5 (A:2-376) Pyruvate phosphate dikinase, N 3e-14
d1vbga3380 d.142.1.5 (A:3-382) Pyruvate phosphate dikinase, N 6e-11
d1h6za3405 d.142.1.5 (A:1-405) Pyruvate phosphate dikinase, N 5e-10
>d1kbla3 d.142.1.5 (A:2-376) Pyruvate phosphate dikinase, N-terminal domain {Clostridium symbiosum [TaxId: 1512]} Length = 375 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: Pyruvate phosphate dikinase, N-terminal domain
domain: Pyruvate phosphate dikinase, N-terminal domain
species: Clostridium symbiosum [TaxId: 1512]

 Score = 71.9 bits (175), Expect = 3e-14
 Identities = 42/355 (11%), Positives = 82/355 (23%), Gaps = 45/355 (12%)

Query: 191 VILLADADA-DAMTSGAKAAACGRLASLSAVSEKVYSDQGVPASFLVPAGVVIPFGSMQL 249
           V    + +A      G K      +  L           G+P    +P G  +   +   
Sbjct: 4   VYKFEEGNASMRNLLGGKGCNLAEMTIL-----------GMP----IPQGFTVTTEACTE 48

Query: 250 ALEQSK-----CMDTFVSFLEQIETA-GPEGGELDNLCCQLQELISALQPSEDIIESIER 303
                K       D     +  +E   G + G+ ++         +       +   +  
Sbjct: 49  YYNSGKQITQEIQDQIFEAITWLEELNGKKFGDTEDPLLVSVRSGARASMPGMMDTILNL 108

Query: 304 IFPANAHLIVRSSANVEDLAGMSAAGLYESIPNVNPSNLRVF-----------------Q 346
                A             A  S     +   +V     +                    
Sbjct: 109 GLNDVAVEGFAKKTGNPRFAYDSYRRFIQMYSDVVMEVPKSHFEKIIDAMKEEKGVHFDT 168

Query: 347 NAVARVWASLYTRRAVLSRRAAGVSQKDATMAVLVQEMLSPDLSFVLHTLSPTDRDHNSV 406
           +  A     L  +   + +    ++ ++       Q M +    F               
Sbjct: 169 DLTADDLKELAEKFKAVYKE--AMNGEEFPQEPKDQLMGAVKAVFRSWDNPRAIVYRRMN 226

Query: 407 EAEIAPGLGETLASGTRGTPWRLSSGKFDGLVRTQAFANFSEEMLVSGAGPADGVVIRLT 466
           +     G    + +   G     S                     +  A   D V    T
Sbjct: 227 DIPGDWGTAVNVQTMVFGNKGETSGTGVAFTRNPSTGEKGIYGEYLINAQGEDVVAGVRT 286

Query: 467 VDYSKKPLTVDPIFRRQLGQRLCSVGFFLERKFGCPQDVEGCLVGKDIYAVQTRP 521
                +     P   +Q       +   LE+ F   QD+E  +    +Y +QTR 
Sbjct: 287 PQPITQLENDMPDCYKQF----MDLAMKLEKHFRDMQDMEFTIEEGKLYFLQTRN 337
>d1vbga3 d.142.1.5 (A:3-382) Pyruvate phosphate dikinase, N-terminal domain {Maize (Zea mays) [TaxId: 4577]} Length = 380 Back     information, alignment and structure
>d1h6za3 d.142.1.5 (A:1-405) Pyruvate phosphate dikinase, N-terminal domain {Trypanosoma brucei [TaxId: 5691]} Length = 405 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query524
d1h6za3405 Pyruvate phosphate dikinase, N-terminal domain {Tr 100.0
d1kbla3375 Pyruvate phosphate dikinase, N-terminal domain {Cl 100.0
d1vbga3380 Pyruvate phosphate dikinase, N-terminal domain {Ma 100.0
d1zyma2124 N-terminal domain of enzyme I of the PEP:sugar pho 98.16
d1h6za2132 Pyruvate phosphate dikinase, central domain {Trypa 97.04
d1vbga2135 Pyruvate phosphate dikinase, central domain {Maize 96.92
d1kbla2133 Pyruvate phosphate dikinase, central domain {Clost 96.43
d2hi6a1132 Hypothetical protein AF0055 {Archaeoglobus fulgidu 93.77
>d1h6za3 d.142.1.5 (A:1-405) Pyruvate phosphate dikinase, N-terminal domain {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: Pyruvate phosphate dikinase, N-terminal domain
domain: Pyruvate phosphate dikinase, N-terminal domain
species: Trypanosoma brucei [TaxId: 5691]

Probab=100.00  E-value=2.3e-40  Score=347.26  Aligned_cols=294  Identities=16%  Similarity=0.129  Sum_probs=185.1

Q ss_pred             eEEEEcc----cc-cCCccccChhhhchHHHHhhhccccccccCCCCCCccccCCeEEECHHHHHHHHHhcCChhHHHHH
Q 009825          189 TGVILLA----DA-DADAMTSGAKAAACGRLASLSAVSEKVYSDQGVPASFLVPAGVVIPFGSMQLALEQSKCMDTFVSF  263 (524)
Q Consensus       189 ~~~~~l~----~~-~~~~~~vG~KAanL~~L~~~~~~~~~~~~~~~~p~~~~VP~gfvIpf~~f~~~l~~~~~~~~i~~l  263 (524)
                      .++++|+    +. ..+..+||||++|||+|.+               .|++||+|||||+.+|++|+++|++.+.+...
T Consensus         4 ~~~~~~~~~~~~~~~~~~~lVGGK~AnLgel~~---------------~GipVP~GFvITt~Ay~~Fl~~n~L~~~i~~~   68 (405)
T d1h6za3           4 KWVYYFGGGNADGNKNMKELLGGKGANLAEMVN---------------LGIPVPPGFTITTEACKTYQETETIPQEVADQ   68 (405)
T ss_dssp             CCEEEECSSSCSCCTTCHHHHHHHHHHHHHHHH---------------TTCCCCCEEEECHHHHTTTTTSSCCCHHHHHH
T ss_pred             cEEEEcCCCcccCCcchHhhccHHHHHHHHHHH---------------CcCCCCCCEEehHHHHHHHHHcCCCcHHHHHH
Confidence            5788886    33 3688899999999999977               68999999999999999999999887666443


Q ss_pred             H----HHhhhcCC----Cc-hhHH--------HHHHHHHHHHHhcCCCHHHHHHHHHhCCCCcceEEccCCCccCc----
Q 009825          264 L----EQIETAGP----EG-GELD--------NLCCQLQELISALQPSEDIIESIERIFPANAHLIVRSSANVEDL----  322 (524)
Q Consensus       264 l----~~l~~~~~----~~-~~l~--------~~~~~ir~~I~~~~~p~~l~~~l~~~~~~~~~vaVRSSa~~ED~----  322 (524)
                      +    ..++....    +. ..+.        .........+....+......++.+........+.+|++..+|+    
T Consensus        69 i~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~s~~~~~~~~~~~  148 (405)
T d1h6za3          69 VRENVSRVEKEMGAKFGDPANPLLFSVRSGAAASMPGMMDTVLNLGLNKVTVDAWVRRAPRLERFVYDSYRRFITMYADI  148 (405)
T ss_dssp             HHHHHHHHHHHHCCBTTCTTSBCCEEEEESCTTC-----CCCCSBSCCHHHHHHHGGGCGGGHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhHHhhhhhccccchhhhhcccccchhhhhhhhhhhhhhhhhhhHHHHHHhcccchhhHHHHHHHHHHhhccc
Confidence            3    22221000    00 0000        00000000000111112222222211111111111111111111    


Q ss_pred             ----------------------------------------cCCcccccccccCcCCCCcHHHHHHHHHHHHHhcCChhHH
Q 009825          323 ----------------------------------------AGMSAAGLYESIPNVNPSNLRVFQNAVARVWASLYTRRAV  362 (524)
Q Consensus       323 ----------------------------------------~~~S~AG~~~S~lnv~~~~~~~l~~AIk~VWAS~~~~rA~  362 (524)
                                                              ....+.+++.+ +++.  +.+++..+|+.||+|+|++|+.
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~l~~ai~~v~~S~~~~~a~  225 (405)
T d1h6za3         149 VMQVGREDFEEALSRMKERRGTKFDTDLTASDLKELCDGYLELFELKTGCS-FPQD--PVMQLFAAIKAVFRSWGNPRAT  225 (405)
T ss_dssp             HHCCCSTTTSTTTHHHHHHHSCSCGGGCCHHHHHHHHHTTHHHHHHHSSSC-CCCC--HHHHHHHHHHHHHHTTTCTTTT
T ss_pred             ccccchhHHHHHHHHHHHhccccccccCcHHHHHHHHHHHHHhhhhhcCCc-cccc--chHHhHHHHHHHHhhhcCchHH
Confidence                                                    11111222222 2333  5789999999999999999999


Q ss_pred             HHHHHhCCCCcCCceeEEEEe-----ecCCCeEEEEEecCCCCCCCCeEEEEeccCCCccccccccCCceeEEecccCCc
Q 009825          363 LSRRAAGVSQKDATMAVLVQE-----MLSPDLSFVLHTLSPTDRDHNSVEAEIAPGLGETLASGTRGTPWRLSSGKFDGL  437 (524)
Q Consensus       363 ~yR~~~Gi~~~~~~MAVLVQ~-----mV~a~~SGVl~T~nP~~g~~~~i~ie~~~GLGe~lV~G~~g~p~~~~~~k~~~~  437 (524)
                      .||..+++++. ..+++++|.     |+....+||+||.||.+|+.+.+.+++++|+|+.+|+|.. +|+.+..++....
T Consensus       226 ~yr~~~~~~~~-~~~~~~~~~v~~~~~~~~~~sgv~~t~~~~tG~~~~~~~~~~~g~~~~vv~G~~-~~~~~~~~~~~~~  303 (405)
T d1h6za3         226 IYRRMNNITGL-LGTAVNVQAMVFGNINDRSATGVAFSRSPSTGENFFFGEYLVNAQGEDVVAGIR-TPQQINHSLSLRW  303 (405)
T ss_dssp             THHHHSCCCSC-CCCCEEEEECCCSCSSTTCEEEEEESSCSSSCCSSCEEEEEESCCTTHHHHCCS-CCEESSHHHHHHH
T ss_pred             HHHHhcCccch-hhhhheeeeeeecccccccccccccccCCCCCCCceeeEecccCcceeeccCcc-CCceeeeecccch
Confidence            99999999864 445555554     4556789999999999999999999999999999999996 7877765554322


Q ss_pred             eeEEeecccceeEEeeccCCCCCcEEEEeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCEEEEEEEECCeEEEE
Q 009825          438 VRTQAFANFSEEMLVSGAGPADGVVIRLTVDYSKKPLTVDPIFRRQLGQRLCSVGFFLERKFGCPQDVEGCLVGKDIYAV  517 (524)
Q Consensus       438 v~~~~~~~~~~~l~~~~~~~~~g~~~~~~v~~~~~~l~~d~~~r~~~~~~La~~a~~lE~~fg~pqDIEw~i~~~~l~Il  517 (524)
                      .....+..+..                 ...+     ...+.+..+.+++|+++|.+||++||+|||||||+++++||||
T Consensus       304 ~~~~~~~~~~~-----------------~~~~-----~~~~~l~~e~~~~La~l~~~iE~~fg~PqDIEWAi~dg~L~IL  361 (405)
T d1h6za3         304 AKAHGVGEEER-----------------RKRY-----PSMEEAMPENYRLLCDVRKRLENHYRDMQDLEFTVQDGRLWLL  361 (405)
T ss_dssp             HTTSSCCHHHH-----------------HHHS-----CCHHHHSHHHHHHHHHHHHHHHHHHTSCEEEEEEEETTEEEEE
T ss_pred             hhccccceecc-----------------cccc-----cchhhcCHHHHHHHHHHHHHHHHHcCCCcceEEEEECCEEEEE
Confidence            11111110000                 0000     0112233456899999999999999999999999999999999


Q ss_pred             eeecccC
Q 009825          518 QTRPQPH  524 (524)
Q Consensus       518 Q~RP~~~  524 (524)
                      |+||+++
T Consensus       362 QaRPv~~  368 (405)
T d1h6za3         362 QCRNGKR  368 (405)
T ss_dssp             EEEECCC
T ss_pred             EccCCCc
Confidence            9999853
>d1kbla3 d.142.1.5 (A:2-376) Pyruvate phosphate dikinase, N-terminal domain {Clostridium symbiosum [TaxId: 1512]} Back     information, alignment and structure
>d1vbga3 d.142.1.5 (A:3-382) Pyruvate phosphate dikinase, N-terminal domain {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d1zyma2 c.8.1.2 (A:3-21,A:145-249) N-terminal domain of enzyme I of the PEP:sugar phosphotransferase system {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1h6za2 c.8.1.1 (A:406-537) Pyruvate phosphate dikinase, central domain {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d1vbga2 c.8.1.1 (A:383-517) Pyruvate phosphate dikinase, central domain {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d1kbla2 c.8.1.1 (A:377-509) Pyruvate phosphate dikinase, central domain {Clostridium symbiosum [TaxId: 1512]} Back     information, alignment and structure
>d2hi6a1 c.8.2.3 (A:1-132) Hypothetical protein AF0055 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure