Citrus Sinensis ID: 009850

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520----
Protein Sequence
MLQEMWNAPPGFRPTKSAPSSPAKPLGVSRTRSDSFHAIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTTNAIKTRDDFADENIDSNVDVNPIVLSKHRSVKKLFPTANAIKTQENFADENINANIVVNQTVLAQQRGVQQLAPFGNSWNIDAPPFYSSKFVKEPIVKDPIGNQYHESLKRTRSGNATNSMRLPDVGEHTRPFAMEPEKPENKTRRLSQSSEESGDKLSYLLPDDEDFEEAIIAAVLGSTNEQPGKSSEASNNSSVIIEKKIDKRLKVFQDITLSLSPRA
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccHHHHHHcccccccHHHHHHHHHHHcccccHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHcHHHHHHHHcHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccHHHHHHHccHHcccccHHHHccHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccHHHHHHccccHHHHcHHHHcccccccHHHHHHHHHHccccccccccccHHccccHHHHHHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccEEEEEEcccccccEEEEEEEEEEcccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccccccEEcccccEEEEEEcHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccHHHHHHHHHHHcccHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHccccccccEccEccccccHcccccccHHcccccccccccccccHHHcccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccHcccccccccccccHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
mlqemwnappgfrptksapsspakplgvsrtrsdsfhaihkvpvgdtpyvraknvqlvdkdpekaIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGlafngkrtktarsqgkKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRAlsiapdnnkmcnLGICLMKQGRIGEAKETLRrvkpavadgprgvdSHLKAYERAQQMLKDLESEMMnkggdrveQSRLFDaflgsssiwqpqpckdhilpttnaiktrddfadenidsnvdvnpivlskhrsvkklfptanaiktqenfadeninanIVVNQTVLAQQRgvqqlapfgnswnidappfysskfvkepivkdpignqyheslkrtrsgnatnsmrlpdvgehtrpfamepekpenktrrlsqsseesgdklsyllpddedFEEAIIAAVLGstneqpgksseasnnssVIIEKKIDKRLKVFQDITLSLSPRA
Flexible Loop (DISEMBL)
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
Low Complexity Region (SEG)
MLQEMWNAPPGFRPTksapsspakpLGVSRTRSDSFHAIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTTNAIKTRDDFADENIDSNVDVNPIVLSKHRSVKKLFPTANAIKTQENFADENINANIVVNQTVLAQQRGVQQLAPFGNSWNIDAPPFYSSKFVKEPIVKDPIGNQYHESLKRTRSGNATNSMRLPDVGEHTRPFAMEPEKPENKTRRLSQSSEESGDKLSYLLPDDEDFEEAIIAAVLGSTNEQPGKSSEASNNSSVIIEKKIDKRLKVFQDITLSLSPRA
Disordered region (IsUnstruct)
***********************************FHAIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVM***************************LDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGK*************VSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGE****************************************************LFDAFLGSSSIWQPQPCKDHILPTTNAIKTRDDFADENIDSNVDVNPIVLSKHRSVKKLFPTANAIKTQENFADENINANIVVNQTVLAQQRGVQQLAPFGNSWNIDAPPFYSSKFVKEPIVKD*********************************************************************EEAIIAAVL********************IEKKIDKRLKVFQDI********
Disordered Region (DISOPRED)
*****WN******************************AIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTTNAIKTRDDFADENIDSNVDVNPIVLSKHRSVKKLFPTANAIKTQENFADENINANIVVNQTVLAQQRGVQQLAPFGNSWNIDAPPFYSSKFVKEPIVKDPIGNQYHESLKRTRSGNATNSMRLPDVGEHTRPFAMEPEKPENKTRRLSQSSEESGDKLSYLLPDDEDFEEAIIAAVLGSTNEQPGKSSEASNNSSVIIEKKIDKRLKVFQDITLSLS***
Disordered Region (DISEMBL)
********************************SDSFHAIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGK****************EQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTTNAIKTRDDFADENIDSNVDVNPIVLSKHRSVKKLFPTANAIKTQENFADENINANIVVNQTVLAQQRGVQQLAPFGNSWNIDAPPFYSSKFVKEPIVKDPIGNQYHESLKRTRSGNATNSMRLPDVGEHTRPFAM*********************KLSYLLPDDEDFEEAIIAAVLGST*************SSVIIEKKIDKRLKVFQDITLSLSPRA
Disordered Region (DISPRO)
********************************SDSFHAIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVA****GVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPT*****TRDDFADENIDSNVDVNPIVLSKHRSVKKLFPTANAIKTQENFADENINANIVVNQTVLAQQRGVQQLAPFGNSWNIDAPPFYSSKFVK***VK***********************************************************LSYLLPDDEDFEEAIIAAVLGST**************SVIIEKKIDKRLKVFQDITLSLS***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLQEMWNAPPGFRPTKSAPSSPAKPLGVSRTRSDSFHAIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIxxxxxxxxxxxxxxxxxxxxxxxxxxxxSLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGxxxxxxxxxxxxxxxxxxxxxxxxxxxxRVEQSRLFDAFLGSSSIWQPQPCKDHILPTTNAIKTRDDFADENIDSNVDVNPIVLSKHRSVKKLFPTANAIKTQENFADENINANIVVNQTVLAQQRGVQQLAPFGNSWNIDAPPFYSSKFVKEPIVKDPIGNQYHESLKRTRSGNATNSMRLPDVGEHTRPFAMEPEKPENKTRRLSQSSEESGDKLSYLLPDDEDFEEAIIAAVLGSTNEQPGKSSEASNNSSVIIEKKIDKRLKVFQDITLSLSPRA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	524
255577530	482	conserved hypothetical protein [Ricinus	0.914	0.993	0.753	0.0
224133684	454	predicted protein [Populus trichocarpa]	0.866	1.0	0.727	0.0
449434138	500	PREDICTED: uncharacterized protein LOC10	0.927	0.972	0.708	0.0
225431084	474	PREDICTED: uncharacterized protein LOC10	0.904	1.0	0.711	0.0
147797595	471	hypothetical protein VITISV_024890 [Viti	0.898	1.0	0.707	0.0
356502717	500	PREDICTED: uncharacterized protein LOC10	0.912	0.956	0.681	0.0
357517969	479	hypothetical protein MTR_8g075260 [Medic	0.896	0.981	0.696	0.0
356559262	501	PREDICTED: uncharacterized protein LOC10	0.914	0.956	0.686	0.0
297734984	449	unnamed protein product [Vitis vinifera]	0.837	0.977	0.716	0.0
359476811	1169	PREDICTED: uncharacterized protein LOC10	0.843	0.378	0.702	0.0

>gi|255577530|ref|XP_002529643.1| conserved hypothetical protein [Ricinus communis] gi|223530869|gb|EEF32730.1| conserved hypothetical protein [Ricinus communis]

 Score =  788 bits (2035), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/527 (75%), Positives = 435/527 (82%), Gaps = 48/527 (9%)

Query: 1   MLQEMWNAPPGFRPTKSAPSSPAKPLGVSRTRSDSFHAIHKVPVGDTPYVRAKNVQLVDK 60
           MLQ+MWNAPPGFRPTKSAP+SPAKPLGVSRTRS+SFHAIHKVPVGDTPYVRAKNVQLVDK
Sbjct: 1   MLQDMWNAPPGFRPTKSAPTSPAKPLGVSRTRSESFHAIHKVPVGDTPYVRAKNVQLVDK 60

Query: 61  DPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDN 120
           DPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDN
Sbjct: 61  DPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDN 120

Query: 121 ILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLG 180
           ILLDLYKRCGRLDDQI+LLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLG
Sbjct: 121 ILLDLYKRCGRLDDQISLLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLG 180

Query: 181 NLGWALMQQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVA 240
           NLGWALMQQNNY+EAEDAYRRALSIAPDNNKMCNLGICLMKQGRI EAK+TLRRVKPAVA
Sbjct: 181 NLGWALMQQNNYVEAEDAYRRALSIAPDNNKMCNLGICLMKQGRISEAKDTLRRVKPAVA 240

Query: 241 DGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHI 300
           DGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 
Sbjct: 241 DGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHN 300

Query: 301 LPTTNAIKTRDDFADENIDSNVDVNPIVLSKHRSVKKLFPTANAIKTQENFADENINANI 360
           +   NA K  DDFADEN+DSN+  N  +  + R+VK+L                      
Sbjct: 301 ILPANASKLHDDFADENMDSNIVTNQTMFPQQRTVKEL---------------------- 338

Query: 361 VVNQTVLAQQRGVQQLAPFGNSWNIDAPPFYSSKFVKEPIVKDPIGNQYHESLKRTRSGN 420
                         Q AP  NS N+ A PF+SSK VKE     PIGN +HE+LKRTRSGN
Sbjct: 339 --------------QFAPSVNSLNVGARPFFSSKLVKE-----PIGNHFHETLKRTRSGN 379

Query: 421 ATNSMRLPDVGEHTRPFAMEPEKPENKTRRLSQSSEESGDKLSYLLPDDEDFEEAIIAAV 480
             NS R  ++G  + P A+E EKPE K+RRL   S+E+ + LS LLPD++DFE+AI+AAV
Sbjct: 380 VANSNRKNEMGLFSMP-AVEHEKPETKSRRL---SDETENGLSELLPDNKDFEDAILAAV 435

Query: 481 LGSTNEQPGK---SSEASNNSSVIIEKKIDKRLKVFQDITLSLSPRA 524
           LG TNE  G+    + ++N+++ I + KI+KRLKVFQDITLSLSPRA
Sbjct: 436 LGPTNEAGGRKPVETGSNNSTTAIFQTKIEKRLKVFQDITLSLSPRA 482

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133684|ref|XP_002327655.1| predicted protein [Populus trichocarpa] gi|222836740|gb|EEE75133.1| predicted protein [Populus trichocarpa]

 Score =  752 bits (1942), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/524 (72%), Positives = 417/524 (79%), Gaps = 70/524 (13%)

Query: 1   MLQEMWNAPPGFRPTKSAPSSPAKPLGVSRTRSDSFHAIHKVPVGDTPYVRAKNVQLVDK 60
           M+Q+MWNAPPGFRPTKSAP+SPAKPLGVSRTRS+SF AIHKVPVGD+PYVRAKNVQLVDK
Sbjct: 1   MMQDMWNAPPGFRPTKSAPTSPAKPLGVSRTRSESFQAIHKVPVGDSPYVRAKNVQLVDK 60

Query: 61  DPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDN 120
           DPEKA+PLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLR RCSDQAQESLDN
Sbjct: 61  DPEKAVPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRHRCSDQAQESLDN 120

Query: 121 ILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLG 180
           ILLDLYKRCGRLDDQIALLKHKL+LIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLG
Sbjct: 121 ILLDLYKRCGRLDDQIALLKHKLFLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLG 180

Query: 181 NLGWALMQQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVA 240
           NLGWALMQQNNYIEAEDAYRRAL+ APDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVA
Sbjct: 181 NLGWALMQQNNYIEAEDAYRRALATAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVA 240

Query: 241 DGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHI 300
           DGPRGVDSHLKAYERAQQMLKDLESEMM+KGGDRVEQ RLFDAFLGSSSIWQPQPCKDH+
Sbjct: 241 DGPRGVDSHLKAYERAQQMLKDLESEMMSKGGDRVEQRRLFDAFLGSSSIWQPQPCKDHM 300

Query: 301 LPTTNAIKTRDDFADENIDSNVDVNPIVLSKHRSVKKLFPTANAIKTQENFADENINANI 360
             T+      DDFA+EN+DSN+  N                                   
Sbjct: 301 QATSTK-SHHDDFANENVDSNIVSNQ---------------------------------- 325

Query: 361 VVNQTVLAQQRGVQQLAPFGNSWNIDAPPFYSSKFVKEPIVKDPIGNQYHESLKRTRSGN 420
             NQ +  QQ  V+Q APFGN WN+DAPPFYSSK VKEPI K+P  +++HE+LKRTRSG 
Sbjct: 326 --NQMLFPQQNSVKQFAPFGNLWNVDAPPFYSSKLVKEPI-KEP-SHEFHETLKRTRSGK 381

Query: 421 ATNSMRLPDVGEHTRPFAMEPEKPENKTRRLSQSSEESGDKLSYLLPDDEDFEEAIIAAV 480
              S R  ++G                  RL   S+E+ DKLS LLPD++DF+EAI+AA+
Sbjct: 382 TATSNRKIEMG------------------RL---SDETEDKLSQLLPDNDDFDEAILAAI 420

Query: 481 LGSTNEQPGKSSEASNNSSVIIEKKIDKRLKVFQDITLSLSPRA 524
           LG           A+N+    ++KKI+KRLKVFQDITLSLSPRA
Sbjct: 421 LGP----------ATNSRKTAVKKKIEKRLKVFQDITLSLSPRA 454

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434138|ref|XP_004134853.1| PREDICTED: uncharacterized protein LOC101220568 [Cucumis sativus]

 Score =  743 bits (1918), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/538 (70%), Positives = 423/538 (78%), Gaps = 52/538 (9%)

Query: 1   MLQEMWNAPPGFRPTKSAPSSPAKPLGVSRTRSDSFHAIHKVPVGDTPYVRAKNVQLVDK 60
           MLQ+MWNAPPGFRP+KSAPSSPAKPL VSR R D +H  HKVPVGDTPYVRAKNVQLV K
Sbjct: 1   MLQDMWNAPPGFRPSKSAPSSPAKPLAVSRLRPDPYHVTHKVPVGDTPYVRAKNVQLVAK 60

Query: 61  DPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDN 120
           DP+KAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLR+RCSDQAQESLDN
Sbjct: 61  DPDKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRNRCSDQAQESLDN 120

Query: 121 ILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLG 180
           ILLDLYKRCGRLDDQIALLKHKL+LIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLG
Sbjct: 121 ILLDLYKRCGRLDDQIALLKHKLFLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLG 180

Query: 181 NLGWALMQQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVA 240
           NLGWALMQQNNY+EAEDAYR+AL+IAPDNNKMCNLGICLMKQGRI EAKE LRRVKPAV 
Sbjct: 181 NLGWALMQQNNYVEAEDAYRKALTIAPDNNKMCNLGICLMKQGRISEAKENLRRVKPAVI 240

Query: 241 DGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH- 299
           DGPRG DSHLKAYERAQQMLKDLESEMMN+GGDR+EQ RLFD FLGSSSIWQPQPCKDH 
Sbjct: 241 DGPRGTDSHLKAYERAQQMLKDLESEMMNRGGDRLEQRRLFDTFLGSSSIWQPQPCKDHT 300

Query: 300 -----ILPTTNAIKT-RDDFADENIDSNVDVNPIVL--SKHRSVKKLFPTANAIKTQENF 351
                 LP TN ++T +DDF DENID+N   N +V    +H+ +K               
Sbjct: 301 TTTLPTLPVTNPVRTIQDDFGDENIDTNSLTNQMVAPPQQHKFIK--------------- 345

Query: 352 ADENINANIVVNQTVLAQQRGVQQLAPFGNSWNIDAPPFYSSKFVKEPIVKDPIGNQYHE 411
                                 Q   P GNS N+ A PF+ SKFV EPI K P+GNQ+ E
Sbjct: 346 ----------------------QVQVPLGNSLNVAAQPFFLSKFVSEPISKVPLGNQFPE 383

Query: 412 SLKRTRSGNATNSMRLPDVGEHTRPFAMEPEKPENKTRRLSQSSEESGDKLSYLLPDDED 471
            LKRTRSGNA NSMR+ D+ E  RPF  E  K E KTR+   +SEE+ DK + +LPDD D
Sbjct: 384 GLKRTRSGNAANSMRVNDLVEIKRPFLAELGKTETKTRKPFSTSEET-DKWAEILPDDND 442

Query: 472 FEEAIIAAVLGSTNEQPGKSSEAS-----NNSSVIIEKKIDKRLKVFQDITLSLSPRA 524
           FEEAI+AAVLGS++++  K + A+          +I++KI+KRLKVF+DITLSLSPRA
Sbjct: 443 FEEAILAAVLGSSDDEAEKKTTANAGAGGGGGGGVIQRKIEKRLKVFEDITLSLSPRA 500

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431084|ref|XP_002265165.1| PREDICTED: uncharacterized protein LOC100257355 [Vitis vinifera]

 Score =  727 bits (1876), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/523 (71%), Positives = 410/523 (78%), Gaps = 49/523 (9%)

Query: 2   LQEMWNAPPGFRPTKSAPSSPAKPLGVSRTRSDSFHAIHKVPVGDTPYVRAKNVQLVDKD 61
           +Q+MWN PPGFRP+ SAPSSPAKP+GVSRTRSDSFH  HKVPVGDTPYVRAK VQLVDKD
Sbjct: 1   MQDMWNVPPGFRPSTSAPSSPAKPIGVSRTRSDSFHVTHKVPVGDTPYVRAKKVQLVDKD 60

Query: 62  PEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNI 121
           PEKAIPLFW+AINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNI
Sbjct: 61  PEKAIPLFWSAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNI 120

Query: 122 LLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGN 181
           LLDLYKRCGRLDDQIALL+HKL+LIQQG+AFNGKRTKTARSQGKKFQVSV QEATRLLGN
Sbjct: 121 LLDLYKRCGRLDDQIALLRHKLFLIQQGMAFNGKRTKTARSQGKKFQVSVGQEATRLLGN 180

Query: 182 LGWALMQQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVAD 241
           LGWALMQQNNYIEAEDAYRRALS+APDNNKMCNLGICLMKQGRI EAKETLRRVKPAVAD
Sbjct: 181 LGWALMQQNNYIEAEDAYRRALSMAPDNNKMCNLGICLMKQGRILEAKETLRRVKPAVAD 240

Query: 242 GPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL 301
           GPRGVDSHLKA+ERA+QML DLESEM+NKG D VEQSRLFDAFL SS++WQPQPCKD   
Sbjct: 241 GPRGVDSHLKAFERARQMLLDLESEMLNKGSDPVEQSRLFDAFLSSSALWQPQPCKDQ-- 298

Query: 302 PTTNAIKTRDDFADENIDSNVDVNPIVLSKHRSVKKLFPTANAIKTQENFADENINANIV 361
            TTN IK++DDF DEN D+N           R +K                         
Sbjct: 299 HTTNTIKSQDDFGDENFDTN-----------RVMK------------------------- 322

Query: 362 VNQTVLAQQRGVQQLAPFGNSWNIDAPPFYSSKFVKEPIVKDPIGNQYHESLKRTRSGNA 421
               VL+ Q+  +  A   NS N+ A PFYSSK       KDPIG    ESLKRTRSG+ 
Sbjct: 323 ----VLSGQKIAKPTAVHANSLNVAALPFYSSK-----TTKDPIGKPLQESLKRTRSGHG 373

Query: 422 TNSMRLPDVGEHTRPFAMEPEKPENKTRRLSQSSEESGDKLSYLLPDDEDFEEAIIAAVL 481
            NS+ + + G   +P  ME  +PENKTRR S S EE+GDK +  LPD ++FE A+IAAVL
Sbjct: 374 ANSIGVNETGAFRKPL-MESMEPENKTRRRSLSPEENGDKWADFLPDSKEFEAALIAAVL 432

Query: 482 GSTNEQPGKSSEASNNSSVIIEKKIDKRLKVFQDITLSLSPRA 524
           GS  E  GK +  + NSS I++ KI+ R KVFQDITLSLSPRA
Sbjct: 433 GSATET-GKKTVETGNSSGILQNKIESRFKVFQDITLSLSPRA 474

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147797595|emb|CAN75795.1| hypothetical protein VITISV_024890 [Vitis vinifera]

 Score =  714 bits (1843), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/520 (70%), Positives = 405/520 (77%), Gaps = 49/520 (9%)

Query: 5   MWNAPPGFRPTKSAPSSPAKPLGVSRTRSDSFHAIHKVPVGDTPYVRAKNVQLVDKDPEK 64
           MWN PPGFRP+ SAPSSPAKP+ VSRTRS+SFH  HKVPVGDTPYVRAK VQLVDKDPEK
Sbjct: 1   MWNVPPGFRPSTSAPSSPAKPIRVSRTRSESFHVTHKVPVGDTPYVRAKKVQLVDKDPEK 60

Query: 65  AIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLD 124
           AIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQ+SLDNILLD
Sbjct: 61  AIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQDSLDNILLD 120

Query: 125 LYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGW 184
           LYKRCGRLDDQIALL+HKL+LIQQG+AFNGKRTKTARSQGKKFQVSV QEATRLLGNLGW
Sbjct: 121 LYKRCGRLDDQIALLRHKLFLIQQGMAFNGKRTKTARSQGKKFQVSVGQEATRLLGNLGW 180

Query: 185 ALMQQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVADGPR 244
           ALMQ+NNYIEAEDAYRRALS+ PDNNKMCNLGICLMKQGRI EAKETLRRVKPAVADG R
Sbjct: 181 ALMQRNNYIEAEDAYRRALSMTPDNNKMCNLGICLMKQGRILEAKETLRRVKPAVADGLR 240

Query: 245 GVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTT 304
           GVDSHLKA+ERA+QML DLESEM+ KG D VEQSRLFDAFL SSS+WQPQPCKD    TT
Sbjct: 241 GVDSHLKAFERARQMLLDLESEMLXKGSDPVEQSRLFDAFLSSSSLWQPQPCKDQX--TT 298

Query: 305 NAIKTRDDFADENIDSNVDVNPIVLSKHRSVKKLFPTANAIKTQENFADENINANIVVNQ 364
           N IK++DDF DEN D+N           R +K                            
Sbjct: 299 NTIKSQDDFGDENFDTN-----------RVMK---------------------------- 319

Query: 365 TVLAQQRGVQQLAPFGNSWNIDAPPFYSSKFVKEPIVKDPIGNQYHESLKRTRSGNATNS 424
            VL  Q+  +  A   NS N+ A PFYSSK     + KDPIG    ESLKRTRSG A NS
Sbjct: 320 -VLPGQKIAKPTAVHANSLNVAALPFYSSK-----MTKDPIGKPLQESLKRTRSGLAANS 373

Query: 425 MRLPDVGEHTRPFAMEPEKPENKTRRLSQSSEESGDKLSYLLPDDEDFEEAIIAAVLGST 484
           + + + G   +P  ME  +PENKTRR S S EE+GDK + LLPD ++FE A+IAAVLGS 
Sbjct: 374 IGVNETGAFRKPL-MESMEPENKTRRRSXSPEENGDKWADLLPDSKEFEAALIAAVLGSA 432

Query: 485 NEQPGKSSEASNNSSVIIEKKIDKRLKVFQDITLSLSPRA 524
            E  GK +  + NSS I++ KI+ RLKVFQDITLS+SPRA
Sbjct: 433 TET-GKKTVETGNSSEILQNKIESRLKVFQDITLSMSPRA 471

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356502717|ref|XP_003520163.1| PREDICTED: uncharacterized protein LOC100803414 [Glycine max]

 Score =  706 bits (1822), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/546 (68%), Positives = 411/546 (75%), Gaps = 68/546 (12%)

Query: 1   MLQEMWNAPPGFRPTKSAPSSPAKPLGV-SRTRSDSFHAIHKVPVGDTPYVRAKNVQLVD 59
           MLQEMWNAPPG RP+KSAP SPAKPLGV  RTRS+SFH  HKVPVGDTPYVRAKNVQLVD
Sbjct: 1   MLQEMWNAPPGLRPSKSAPCSPAKPLGVVPRTRSESFHVAHKVPVGDTPYVRAKNVQLVD 60

Query: 60  KDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLD 119
           KDPE+AIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLD
Sbjct: 61  KDPERAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLD 120

Query: 120 NILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLL 179
           NILLDLYKRCGRLDDQI LLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLL
Sbjct: 121 NILLDLYKRCGRLDDQIGLLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLL 180

Query: 180 GNLGWALMQQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPAV 239
           GNLGWALMQQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETL RVKPAV
Sbjct: 181 GNLGWALMQQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLYRVKPAV 240

Query: 240 ADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKD- 298
            DGPRG DSHLKAYERAQQMLKDLESEMMNKG DR+EQSRLF+AFLGSSSIWQPQPCKD 
Sbjct: 241 MDGPRGSDSHLKAYERAQQMLKDLESEMMNKGVDRIEQSRLFEAFLGSSSIWQPQPCKDH 300

Query: 299 ------HILPTTNAIKTRDDFADENIDSNVDVNPIVLSKHRSVKKLFPTANAIKTQENFA 352
                     T N+ K  D+FADENI+SN+                              
Sbjct: 301 HHTTTLLATTTINSAKIHDEFADENINSNI------------------------------ 330

Query: 353 DENINANIVVNQTVLAQQRGV-------QQLAPFGNSWNIDAPPFYSSKFVKEPIVKDPI 405
                  ++ N T L   +G        Q  A  GNS N+ APPFY+S   K  ++++PI
Sbjct: 331 -------MLTNHTALPPSKGSNNNNSNKQVGAILGNSLNVAAPPFYAS---KSSMLREPI 380

Query: 406 GNQ-YHESLKRTRSGNATNSMRLP----DVGEHTRPFAME--PEKPENKTRRLSQSSEES 458
            NQ + E+LKRTRSGNA  SMR+     D   + +   +E     P+NK+RRLS      
Sbjct: 381 ENQLFSETLKRTRSGNAAGSMRVVSDVRDANINNKKLHVELGVPVPQNKSRRLSSEDAAE 440

Query: 459 GDKLSYLLPDDEDFEEAIIAAVLGSTNEQPGKSSEASNNSSVIIEKKIDKRLKVFQDITL 518
            +KL+ LLP+D++FEEAI+AA+LG+ NE      +  + +S ++      RLKVFQDITL
Sbjct: 441 KNKLTDLLPNDDEFEEAILAAILGAPNESDKAYYDTGSTTSRML------RLKVFQDITL 494

Query: 519 SLSPRA 524
           SLSPRA
Sbjct: 495 SLSPRA 500

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357517969|ref|XP_003629273.1| hypothetical protein MTR_8g075260 [Medicago truncatula] gi|355523295|gb|AET03749.1| hypothetical protein MTR_8g075260 [Medicago truncatula]

 Score =  694 bits (1792), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/533 (69%), Positives = 406/533 (76%), Gaps = 63/533 (11%)

Query: 1   MLQEMWNAPPGFRPTKSAPSSPAKPLGVSRTRSDSFHAIHKVPVGDTPYVRAKNVQLVDK 60
           M+QEMWNAPPGFRP+KSAPSSPAKPLGV RTRS+SFH  HKVP+GDTPYVRAKNVQLVDK
Sbjct: 1   MMQEMWNAPPGFRPSKSAPSSPAKPLGVPRTRSESFHITHKVPIGDTPYVRAKNVQLVDK 60

Query: 61  DPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDN 120
           DPE+AIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDN
Sbjct: 61  DPERAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDN 120

Query: 121 ILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLG 180
           ILLDLYKRCGRLDDQIALL+HKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLG
Sbjct: 121 ILLDLYKRCGRLDDQIALLRHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLG 180

Query: 181 NLGWALMQQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVA 240
           NLGWALMQQNNYIEAE+AYRRAL +APDNNKMCNLGICLMKQGRI EAKETL RVKPAV 
Sbjct: 181 NLGWALMQQNNYIEAEEAYRRALCLAPDNNKMCNLGICLMKQGRIAEAKETLHRVKPAVT 240

Query: 241 DGPRGVDSHLKAYERAQQMLKDLESEMMNKGG-DRVEQSRLFDAFLGSSSIWQPQPCKDH 299
           DGPRG DSHLKAYERAQQMLKDLESEMMN+GG DR+EQSRLF+AFLGSSSIWQPQPCKD+
Sbjct: 241 DGPRGSDSHLKAYERAQQMLKDLESEMMNRGGVDRLEQSRLFEAFLGSSSIWQPQPCKDN 300

Query: 300 I---LP--TTNAIKTRDDFADENIDSNVDVNPIVLSKHRSVKKLFPTANAIKTQENFADE 354
           I   LP   T +   +D+F DENI+SN                                 
Sbjct: 301 IHTSLPPMRTTSTTIQDEFGDENINSNT-------------------------------- 328

Query: 355 NINANIVVNQTVLAQQRGVQQLAPF-GNSWNIDAPPFYSSKFVKEPIVKDPIGN-QYHES 412
               NIV N T   Q +      P   NS N+ APPFY++K       K+   N    E 
Sbjct: 329 ----NIVKNYTAQPQNK----FTPLVNNSLNVAAPPFYAAK----SSFKESNENLNLSER 376

Query: 413 LKRTRSGNATNSMRLPDVGEHTRPFAMEPEKPENKTRRLSQSSEESGDKLSYLLPDDEDF 472
           LKRTRSGNA   +R+ DV  ++    +E   P NK RRLS       +KL  LLPD +DF
Sbjct: 377 LKRTRSGNAAGLLRVDDV--NSNKVNVELGVPGNKARRLSFEK----NKLCDLLPDTKDF 430

Query: 473 EEAIIAAVLGSTNEQPGKSSEASNNSSVIIEKKIDK-RLKVFQDITLSLSPRA 524
           E+AI+AAVLGS+NE   +++  S     I  KKIDK RLKVFQDITLSLSP+A
Sbjct: 431 EDAILAAVLGSSNELENENAATSG----ICSKKIDKRRLKVFQDITLSLSPKA 479

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559262|ref|XP_003547919.1| PREDICTED: uncharacterized protein LOC100788369 [Glycine max]

 Score =  692 bits (1785), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/546 (68%), Positives = 416/546 (76%), Gaps = 67/546 (12%)

Query: 1   MLQEMWNAPPGFRPTKSAPSSPAKPLG-VSRTRSDSFHAIHKVPVGDTPYVRAKNVQLVD 59
           MLQ+MWNAPPGFRP+KSAPSSPAKPLG V RTRS++FH  HKVP+GDTPYVRAKNVQLV+
Sbjct: 1   MLQDMWNAPPGFRPSKSAPSSPAKPLGMVPRTRSETFHVAHKVPIGDTPYVRAKNVQLVN 60

Query: 60  KDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLD 119
           KDPE+AIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLD
Sbjct: 61  KDPERAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLD 120

Query: 120 NILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLL 179
           NILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLL
Sbjct: 121 NILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLL 180

Query: 180 GNLGWALMQQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPAV 239
           GNLGWALMQQNNYIEAE+AYRRAL IAPDNNKMCNLGICLMKQGRIGEAKETL RVKPAV
Sbjct: 181 GNLGWALMQQNNYIEAEEAYRRALLIAPDNNKMCNLGICLMKQGRIGEAKETLYRVKPAV 240

Query: 240 ADGPRGVDSHLKAYERAQQMLKDLESEMMNKGG-DRVEQSRLFDAFLGSSSIWQPQPCKD 298
            DGPRG DSHLKAYERAQQMLKDLESEMMNKGG DR+EQSRLF+AFLGSSSIWQPQPCKD
Sbjct: 241 MDGPRGSDSHLKAYERAQQMLKDLESEMMNKGGVDRIEQSRLFEAFLGSSSIWQPQPCKD 300

Query: 299 H-------ILPTTNAIKTRDDFADENIDSNVDVNPIVLSKHRSVKKLFPTANAIKTQENF 351
           H          TTN+ K  D+FADENI+SN+                             
Sbjct: 301 HHHTTLPAAATTTNSAKIHDEFADENINSNI----------------------------- 331

Query: 352 ADENINANIVVNQTVLAQQRGV---QQL-APFGNSWNIDAPPFYSSKFVKEPIVKDPIGN 407
                   I  N T L   +G    +QL A  GNS N+ APPFY+S   K  ++++PI N
Sbjct: 332 --------ISTNHTALPPTKGSNNNKQLGAILGNSLNVAAPPFYASS--KSSMLREPIEN 381

Query: 408 QYHESLKRTRSGNATNSMR-LPDVGEHTRPFAMEPEK-------PENKTRRL-SQSSEES 458
              E+LKRTRSGNA  SMR + DV +       +          P+NKTRRL S+ +E++
Sbjct: 382 HLSETLKRTRSGNAAGSMRVVSDVRDANNNNNNKKLHVELGVPVPQNKTRRLSSEDAEKN 441

Query: 459 GDKLSYLLPDDEDFEEAIIAAVLGSTNEQPGKSSEASNNSSVIIEKKIDKRLKVFQDITL 518
                 LLPDD++FEEAI+AA+LG  NE    + + S+ +S ++      RLKVFQDITL
Sbjct: 442 KLTDLDLLPDDDEFEEAILAAILGPPNESDKANYDTSSTTSRML------RLKVFQDITL 495

Query: 519 SLSPRA 524
           SLSPRA
Sbjct: 496 SLSPRA 501

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734984|emb|CBI17346.3| unnamed protein product [Vitis vinifera]

 Score =  684 bits (1766), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/487 (71%), Positives = 381/487 (78%), Gaps = 48/487 (9%)

Query: 5   MWNAPPGFRPTKSAPSSPAKPLGVSRTRSDSFHAIHKVPVGDTPYVRAKNVQLVDKDPEK 64
           MWN PPGFRP+ SAPSSPAKP+GVSRTRSDSFH  HKVPVGDTPYVRAK VQLVDKDPEK
Sbjct: 1   MWNVPPGFRPSTSAPSSPAKPIGVSRTRSDSFHVTHKVPVGDTPYVRAKKVQLVDKDPEK 60

Query: 65  AIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLD 124
           AIPLFW+AINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLD
Sbjct: 61  AIPLFWSAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLD 120

Query: 125 LYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGW 184
           LYKRCGRLDDQIALL+HKL+LIQQG+AFNGKRTKTARSQGKKFQVSV QEATRLLGNLGW
Sbjct: 121 LYKRCGRLDDQIALLRHKLFLIQQGMAFNGKRTKTARSQGKKFQVSVGQEATRLLGNLGW 180

Query: 185 ALMQQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVADGPR 244
           ALMQQNNYIEAEDAYRRALS+APDNNKMCNLGICLMKQGRI EAKETLRRVKPAVADGPR
Sbjct: 181 ALMQQNNYIEAEDAYRRALSMAPDNNKMCNLGICLMKQGRILEAKETLRRVKPAVADGPR 240

Query: 245 GVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTT 304
           GVDSHLKA+ERA+QML DLESEM+NKG D VEQSRLFDAFL SS++WQPQPCKD    TT
Sbjct: 241 GVDSHLKAFERARQMLLDLESEMLNKGSDPVEQSRLFDAFLSSSALWQPQPCKDQ--HTT 298

Query: 305 NAIKTRDDFADENIDSNVDVNPIVLSKHRSVKKLFPTANAIKTQENFADENINANIVVNQ 364
           N IK++DDF DEN D+N           R +K                            
Sbjct: 299 NTIKSQDDFGDENFDTN-----------RVMK---------------------------- 319

Query: 365 TVLAQQRGVQQLAPFGNSWNIDAPPFYSSKFVKEPIVKDPIGNQYHESLKRTRSGNATNS 424
            VL+ Q+  +  A   NS N+ A PFYSSK       KDPIG    ESLKRTRSG+  NS
Sbjct: 320 -VLSGQKIAKPTAVHANSLNVAALPFYSSK-----TTKDPIGKPLQESLKRTRSGHGANS 373

Query: 425 MRLPDVGEHTRPFAMEPEKPENKTRRLSQSSEESGDKLSYLLPDDEDFEEAIIAAVLGST 484
           + + + G   +P  ME  +PENKTRR S S EE+GDK +  LPD ++FE A+IAAVLGS 
Sbjct: 374 IGVNETGAFRKPL-MESMEPENKTRRRSLSPEENGDKWADFLPDSKEFEAALIAAVLGSA 432

Query: 485 NEQPGKS 491
            E   K+
Sbjct: 433 TETGKKT 439

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476811|ref|XP_002265051.2| PREDICTED: uncharacterized protein LOC100245548 [Vitis vinifera]

 Score =  667 bits (1720), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/491 (70%), Positives = 380/491 (77%), Gaps = 49/491 (9%)

Query: 18  APSSPAKPLGVSRTRSDSFHAIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGD 77
           APSSPAKP+ VSRTRS+SFH  HKVPVGDTPYVRAK VQLVDKDPEKAIPLFWAAINAGD
Sbjct: 89  APSSPAKPIRVSRTRSESFHVTHKVPVGDTPYVRAKKVQLVDKDPEKAIPLFWAAINAGD 148

Query: 78  RVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIA 137
           RVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQ+SLDNILLDLYKRCGRLDDQIA
Sbjct: 149 RVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQDSLDNILLDLYKRCGRLDDQIA 208

Query: 138 LLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAED 197
           LL+HKL+LIQQG+AFNGKRTKTARSQGKKFQVSV QEATRLLGNLGWALMQ+NNYIEAED
Sbjct: 209 LLRHKLFLIQQGMAFNGKRTKTARSQGKKFQVSVGQEATRLLGNLGWALMQRNNYIEAED 268

Query: 198 AYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQ 257
           AYRRALS+ PDNNKMCNLGICLMKQGRI EAKETLRRVKPAVADG RGVDSHLKA+ERA+
Sbjct: 269 AYRRALSMTPDNNKMCNLGICLMKQGRILEAKETLRRVKPAVADGLRGVDSHLKAFERAR 328

Query: 258 QMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTTNAIKTRDDFADEN 317
           QML DLESEM+NKG D VEQSRLFDAFL SSS+WQPQPCKD    TTN IK++DDF DEN
Sbjct: 329 QMLLDLESEMLNKGSDPVEQSRLFDAFLSSSSLWQPQPCKDQ--HTTNTIKSQDDFGDEN 386

Query: 318 IDSNVDVNPIVLSKHRSVKKLFPTANAIKTQENFADENINANIVVNQTVLAQQRGVQQLA 377
            D+N           R +K                             VL  Q+  +  A
Sbjct: 387 FDTN-----------RVMK-----------------------------VLPGQKIAKPTA 406

Query: 378 PFGNSWNIDAPPFYSSKFVKEPIVKDPIGNQYHESLKRTRSGNATNSMRLPDVGEHTRPF 437
              NS N+ A PFYSSK     + KDPIG    ESLKRTRSG A NS+ + + G   +P 
Sbjct: 407 VHANSLNVAALPFYSSK-----MTKDPIGKPLQESLKRTRSGLAANSIGVNETGAFRKPL 461

Query: 438 AMEPEKPENKTRRLSQSSEESGDKLSYLLPDDEDFEEAIIAAVLGSTNEQPGKSSEASNN 497
            ME  +PENKTRR S S EE+GDK + LLPD ++FE A+IAAVLGS  E  GK +  + N
Sbjct: 462 -MESMEPENKTRRQSLSPEENGDKWADLLPDSKEFEAALIAAVLGSATE-TGKKTVETGN 519

Query: 498 SSVIIEKKIDK 508
           SS I++ KI+K
Sbjct: 520 SSGILQNKIEK 530

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	524
TAIR|locus:2080858	430	AT3G51280 "AT3G51280" [Arabido	0.641	0.781	0.769	2.7e-145
TAIR|locus:2156574	306	ATSDI1 "SULPHUR DEFICIENCY-IND	0.435	0.745	0.612	2.3e-71
TAIR|locus:2010612	303	AT1G04770 "AT1G04770" [Arabido	0.435	0.752	0.600	1e-68
TAIR|locus:2133099	450	MS5 "MALE-STERILE 5" [Arabidop	0.454	0.528	0.511	7.6e-64
TAIR|locus:2158750	469	AT5G44330 [Arabidopsis thalian	0.530	0.592	0.438	4.8e-55
TAIR|locus:4515103601	237	AT5G22794 "AT5G22794" [Arabido	0.141	0.312	0.573	6e-16

TAIR|locus:2080858 AT3G51280 "AT3G51280" [Arabidopsis thaliana (taxid:3702)]

 Score = 1324 (471.1 bits), Expect = 2.7e-145, Sum P(3) = 2.7e-145
 Identities = 263/342 (76%), Positives = 287/342 (83%)

Query:    12 FRPTXXXXXXXXXXLGVSRTRSDSFHAIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWA 71
             FRPT          LG+SRT+S+SFHAIHKVPVGD+PYVRAKNVQLV+KDPE+AIPLFW 
Sbjct:     6 FRPTKSAPCSPAKPLGISRTQSESFHAIHKVPVGDSPYVRAKNVQLVEKDPERAIPLFWK 65

Query:    72 AINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGR 131
             AINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLR RCSDQAQESLDNILLDLYKRCGR
Sbjct:    66 AINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRVRCSDQAQESLDNILLDLYKRCGR 125

Query:   132 LDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNN 191
             LDDQI LLKHKL+LIQ+GLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQ++N
Sbjct:   126 LDDQIGLLKHKLFLIQKGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQRDN 185

Query:   192 YIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLK 251
             ++EAEDAYRRALSIAPDNNKMCNLGICLMKQGRI EAKETLRRVKPAV DGPRGVDSHLK
Sbjct:   186 FVEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIDEAKETLRRVKPAVVDGPRGVDSHLK 245

Query:   252 AYERAQQMLKDLESEMMNKGGD-RVEQSRLFDAFLGSSSIWQPQPCKDHILPTTN--AIK 308
             AYERAQQML DL SEMM +GGD +VEQ RLFDA  GSSSIWQPQPC +  +       + 
Sbjct:   246 AYERAQQMLNDLGSEMMRRGGDDKVEQRRLFDAIFGSSSIWQPQPCSEQTVKAKPKPGLS 305

Query:   309 TRDDFADENIDSNVDVNPIVLSKHR-SVKKLFPTANAIKTQE 349
               D + DEN+   + VNP+V++  R   K  F +   I   E
Sbjct:   306 NGDGYGDENV--KMSVNPVVVNPLRVDAKPFFSSKLVISNNE 345

GO:0005575 "cellular_component" evidence=ND

GO:0042802 "identical protein binding" evidence=IEA

GO:0006260 "DNA replication" evidence=RCA

GO:0006270 "DNA replication initiation" evidence=RCA

GO:0006275 "regulation of DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

GO:0051726 "regulation of cell cycle" evidence=RCA

TAIR|locus:2156574 ATSDI1 "SULPHUR DEFICIENCY-INDUCED 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 722 (259.2 bits), Expect = 2.3e-71, P = 2.3e-71
 Identities = 142/232 (61%), Positives = 175/232 (75%)

Query:    36 FHAIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNR 95
             FH IHKVP GDTPYVRAK+ QL++K+PE AI  FW AIN GDRVDSALKDMA+VMKQ +R
Sbjct:    27 FHVIHKVPCGDTPYVRAKHAQLIEKNPEMAIVWFWKAINTGDRVDSALKDMAVVMKQLDR 86

Query:    96 AEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGK 155
             +EEAIEAIKS R RCS  +Q+SLDN+L+DLYK+CGR+++Q+ LLK KL  I QG AFNGK
Sbjct:    87 SEEAIEAIKSFRPRCSKNSQDSLDNVLIDLYKKCGRMEEQVELLKRKLRQIYQGEAFNGK 146

Query:   156 RTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNKMCNL 215
              TKTARS GKKFQV+V+QE +RLLGNLGWA MQQ  Y+ AE  YR+A  + PD NK CNL
Sbjct:   147 PTKTARSHGKKFQVTVQQEISRLLGNLGWAYMQQAKYLSAEAVYRKAQMVEPDANKSCNL 206

Query:   216 GICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEM 267
              +CL+KQGR  E +  L  V   +     G D   +  +RA+++L +LES +
Sbjct:   207 AMCLIKQGRFEEGRLVLDDV---LEYRVLGADD-CRTRQRAEELLSELESSL 254

GO:0005634 "nucleus" evidence=ISM

GO:0006792 "regulation of sulfur utilization" evidence=IMP

GO:0010438 "cellular response to sulfur starvation" evidence=IEP

TAIR|locus:2010612 AT1G04770 "AT1G04770" [Arabidopsis thaliana (taxid:3702)]

 Score = 697 (250.4 bits), Expect = 1.0e-68, P = 1.0e-68
 Identities = 140/233 (60%), Positives = 177/233 (75%)

Query:    35 SFHAIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQN 94
             +++ +HK+P GD+PYVRAK+VQLV+KD E AI LFW AI A DRVDSALKDMA++MKQQN
Sbjct:    19 AYNVVHKLPHGDSPYVRAKHVQLVEKDAEAAIELFWIAIKARDRVDSALKDMALLMKQQN 78

Query:    95 RAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNG 154
             RAEEAI+AI+S R  CS QAQESLDN+L+DLYK+CGR+++Q+ LLK KL++I QG AFNG
Sbjct:    79 RAEEAIDAIQSFRDLCSRQAQESLDNVLIDLYKKCGRIEEQVELLKQKLWMIYQGEAFNG 138

Query:   155 KRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNKMCN 214
             K TKTARS GKKFQV+VE+E +R+LGNLGWA MQ  +Y  AE  YR+A  I PD NK CN
Sbjct:   139 KPTKTARSHGKKFQVTVEKETSRILGNLGWAYMQLMDYTAAEAVYRKAQLIEPDANKACN 198

Query:   215 LGICLMKQGRIGEAKETLRRVKPAVADGPRGV-DSHLKAYERAQQMLKDLESE 266
             L  CL+KQG+  EA+  L R    + +   G  D  L A  R Q++L +L+ +
Sbjct:   199 LCTCLIKQGKHDEARSILFR--DVLMENKEGSGDPRLMA--RVQELLSELKPQ 247

GO:0009658 "chloroplast organization" evidence=IMP

TAIR|locus:2133099 MS5 "MALE-STERILE 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 651 (234.2 bits), Expect = 7.6e-64, P = 7.6e-64
 Identities = 130/254 (51%), Positives = 175/254 (68%)

Query:    29 SRTRSDSFHAIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAI 88
             S  R D FH +HKVP GD+PYVRAK+ QL+DKDP +AI LFW AINAGDRVDSALKDMA+
Sbjct:    44 SSERRDPFHIVHKVPSGDSPYVRAKHAQLIDKDPNRAISLFWTAINAGDRVDSALKDMAV 103

Query:    89 VMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQ 148
             VMKQ  R++E IEAIKS R  CS ++Q+S+DN+LL+LYK+ GR++++  LL+HKL  ++Q
Sbjct:   104 VMKQLGRSDEGIEAIKSFRYLCSFESQDSIDNLLLELYKKSGRIEEEAVLLEHKLQTLEQ 163

Query:   149 GLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYR-------- 200
             G+ F G+ ++  R QGK   +++EQE  R+LGNLGW  +Q +NY  AE  YR        
Sbjct:   164 GMGFGGRVSRAKRVQGKHVIMTIEQEKARILGNLGWVHLQLHNYGIAEQHYRFGFVTKIP 223

Query:   201 --------RALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKA 252
                     RAL +  D NK+CNL ICLM+  RI EAK  L  V+ + A+   G +   K+
Sbjct:   224 NIDYCLVMRALGLERDKNKLCNLAICLMRMSRIPEAKSLLDDVRDSPAESECGDEPFAKS 283

Query:   253 YERAQQMLKDLESE 266
             Y+RA +ML ++ES+
Sbjct:   284 YDRAVEMLAEIESK 297

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0009556 "microsporogenesis" evidence=IMP

TAIR|locus:2158750 AT5G44330 [Arabidopsis thaliana (taxid:3702)]

 Score = 568 (205.0 bits), Expect = 4.8e-55, P = 4.8e-55
 Identities = 125/285 (43%), Positives = 175/285 (61%)

Query:    41 KVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAI 100
             +V  GD+PYVRAK+ QLV KDP +AI LFWAAINAGDRVDSALKDM +V+KQ NR +E I
Sbjct:    49 RVRTGDSPYVRAKHAQLVSKDPNRAISLFWAAINAGDRVDSALKDMVVVLKQLNRFDEGI 108

Query:   101 EAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTA 160
             EAIKS R  C  ++Q+S+DN+LL+LY + GR+ +   LL+HKL  ++Q   + G+     
Sbjct:   109 EAIKSFRYLCPFESQDSIDNLLLELYMKSGRITEVAELLEHKLRTLEQDKHYGGRIKIAK 168

Query:   161 RSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNKMCNLGICLM 220
             RS  ++   ++EQE  R+LGNL W  +Q +NY  AE  YR ALS+ PDNNK+CNL ICL+
Sbjct:   169 RSHEEQNNKTIEQEKARILGNLAWVHLQLHNYGIAEQYYRNALSLEPDNNKLCNLAICLI 228

Query:   221 KQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRL 280
             +  R  EAK  L  VK ++ +  +  +   K++ERA +ML + E   +    + +  S  
Sbjct:   229 RMERTHEAKSLLEDVKQSLGNQWKN-EPFCKSFERATEMLAEREQATVADKPEDLLTSSF 287

Query:   281 FDAFLGSSSIWQPQPCKDHILPTT----NAIKTRDDFADENIDSN 321
              D F  SS        K  +  T+    N  KT    + E+++ N
Sbjct:   288 SDNF--SSRCSGGMKGKKALAGTSTELGNIHKTNSHASSESVEQN 330

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:4515103601 AT5G22794 "AT5G22794" [Arabidopsis thaliana (taxid:3702)]

 Score = 207 (77.9 bits), Expect = 6.0e-16, P = 6.0e-16
 Identities = 43/75 (57%), Positives = 58/75 (77%)

Query:   106 LRSRCS-DQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQG 164
             L S  S  QAQESL+N+L+DLYK+ GR ++Q+ LLK +L++I Q  AFNGK  K ARS G
Sbjct:    63 LESHISYGQAQESLENVLIDLYKKGGRTEEQVELLKLQLWMIYQEEAFNGKPAKIARSHG 122

Query:   165 KKFQVSVEQEATRLL 179
             +KFQV+VE+E +R+L
Sbjct:   123 RKFQVTVEKETSRML 137


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.131   0.372    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      524       514   0.00088  119 3  11 23  0.44    34
                                                     35  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  616 (65 KB)
  Total size of DFA:  283 KB (2148 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  50.87u 0.08s 50.95t   Elapsed:  00:00:02
  Total cpu time:  50.87u 0.08s 50.95t   Elapsed:  00:00:02
  Start:  Sat May 11 08:21:24 2013   End:  Sat May 11 08:21:26 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pm.C_scaffold_57000031 hypothetical protein (454 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	524
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	1e-10
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	6e-10
pfam13414	69	pfam13414, TPR_11, TPR repeat	5e-07
pfam00515	34	pfam00515, TPR_1, Tetratricopeptide repeat	1e-06
pfam07719	34	pfam07719, TPR_2, Tetratricopeptide repeat	3e-06
smart00028	34	smart00028, TPR, Tetratricopeptide repeats	6e-06
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	1e-05
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	7e-05
TIGR02552	135	TIGR02552, LcrH_SycD, type III secretion low calci	9e-05
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	1e-04
pfam13181	34	pfam13181, TPR_8, Tetratricopeptide repeat	6e-04
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	0.001
COG5010	257	COG5010, TadD, Flp pilus assembly protein TadD, co	0.001
TIGR02795	117	TIGR02795, tol_pal_ybgF, tol-pal system protein Yb	0.002
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	0.003
pfam13176	36	pfam13176, TPR_7, Tetratricopeptide repeat	0.003
COG4700	251	COG4700, COG4700, Uncharacterized protein conserve	0.004

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 58.2 bits (141), Expect = 1e-10
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 1/68 (1%)

Query: 169 VSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNKM-CNLGICLMKQGRIGE 227
           + ++ +      NL  A  +   Y EA + Y +AL + PDN K   NLG+   K G+  E
Sbjct: 27  LELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEE 86

Query: 228 AKETLRRV 235
           A E   + 
Sbjct: 87  ALEAYEKA 94

Length = 100

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 56.2 bits (136), Expect = 6e-10
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 181 NLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRV 235
           NLG    +  +Y EA + Y +AL + PDN     NL     K G+  EA E   + 
Sbjct: 5   NLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60

Length = 100

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 46.5 bits (111), Expect = 5e-07
 Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 2/57 (3%)

Query: 181 NLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQG-RIGEAKETLRRV 235
           NLG AL +  +Y EA +AY +AL + PDN +   NL +  +K G    EA E L + 
Sbjct: 8   NLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEKA 64

Length = 69

>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat

 Score = 44.7 bits (107), Expect = 1e-06
 Identities = 13/33 (39%), Positives = 20/33 (60%)

Query: 177 RLLGNLGWALMQQNNYIEAEDAYRRALSIAPDN 209
           + L NLG A ++   Y EA + Y +AL + P+N
Sbjct: 2   KALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34

Length = 34

>gnl|CDD|191825 pfam07719, TPR_2, Tetratricopeptide repeat

 Score = 43.7 bits (104), Expect = 3e-06
 Identities = 14/33 (42%), Positives = 20/33 (60%)

Query: 177 RLLGNLGWALMQQNNYIEAEDAYRRALSIAPDN 209
             L NLG A  +  +Y EA +AY +AL + P+N
Sbjct: 2   EALYNLGLAYYKLGDYEEALEAYEKALELDPNN 34

This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515. Length = 34

>gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats

 Score = 42.8 bits (102), Expect = 6e-06
 Identities = 13/33 (39%), Positives = 20/33 (60%)

Query: 177 RLLGNLGWALMQQNNYIEAEDAYRRALSIAPDN 209
             L NLG A ++  +Y EA + Y +AL + P+N
Sbjct: 2   EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 8/71 (11%)

Query: 173 QEATRLLGNLGWALMQQNNYIEAEDAYRRALSIA----PDNNK----MCNLGICLMKQGR 224
            +    L NL   L +  +Y EA +   +AL +A     D+ +    + NL    +  G 
Sbjct: 2   PDLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGD 61

Query: 225 IGEAKETLRRV 235
             EA E L + 
Sbjct: 62  YDEALEYLEKA 72

Length = 78

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 45.1 bits (107), Expect = 7e-05
 Identities = 44/185 (23%), Positives = 67/185 (36%), Gaps = 12/185 (6%)

Query: 57  LVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQE 116
           L     +KA+ +   A +A      A   +           +A+ + K L +   D A  
Sbjct: 578 LGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALA 637

Query: 117 SLDNILLDLYKRCGRLDDQIALLKH---------KLYLIQQGLAFNGKRTKTARSQGKKF 167
            L  +L D Y         I  LK          +  +    L    KRT++A+   K  
Sbjct: 638 LL--LLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSL 695

Query: 168 QVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGE 227
           Q    + A       G   ++Q +Y  A  AYR+AL  AP +     L   L+  G   E
Sbjct: 696 QKQHPKAAL-GFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAE 754

Query: 228 AKETL 232
           A +TL
Sbjct: 755 AVKTL 759

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|233924 TIGR02552, LcrH_SycD, type III secretion low calcium response chaperone LcrH/SycD

 Score = 42.3 bits (100), Expect = 9e-05
 Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 5/83 (6%)

Query: 182 LGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVA 240
           L         Y EA DAY  A ++ PD+ +   +   CL+  G    A + L      + 
Sbjct: 57  LAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLA-IEIC 115

Query: 241 DGPRGVDSHLKAYERAQQMLKDL 263
                   + +  ERA+ ML+ L
Sbjct: 116 GEN---PEYSELKERAEAMLESL 135

Genes in this family are found in type III secretion operons. LcrH, from Yersinia is believed to have a regulatory function in the low-calcium response of the secretion system. The same protein is also known as SycD (SYC = Specific Yop Chaperone) for its chaperone role. In Pseudomonas, where the homolog is known as PcrH, the chaperone role has been demonstrated and the regulatory role appears to be absent. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. Length = 135

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 44.1 bits (102), Expect = 1e-04
 Identities = 38/167 (22%), Positives = 68/167 (40%), Gaps = 14/167 (8%)

Query: 82  ALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKH 141
           AL ++ ++++   + EEA+E ++   +   D    +   + L      G  ++ + L + 
Sbjct: 97  ALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEK 155

Query: 142 KL------------YLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQ 189
            L             L    L     R + A    +K       +    L NLG   ++ 
Sbjct: 156 ALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKL 215

Query: 190 NNYIEAEDAYRRALSIAPDN-NKMCNLGICLMKQGRIGEAKETLRRV 235
             Y EA + Y +AL + PDN   + NL + L++ GR  EA E L + 
Sbjct: 216 GKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKA 262

Length = 291

>gnl|CDD|205362 pfam13181, TPR_8, Tetratricopeptide repeat

 Score = 37.1 bits (87), Expect = 6e-04
 Identities = 12/33 (36%), Positives = 19/33 (57%)

Query: 177 RLLGNLGWALMQQNNYIEAEDAYRRALSIAPDN 209
           R    LG   +Q  +Y EA++ Y +AL + P+N
Sbjct: 2   RAYYLLGQIYLQLGDYEEAKEYYEKALELDPNN 34

Length = 34

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 37.3 bits (87), Expect = 0.001
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 185 ALMQQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGP 243
           A ++  +Y EA  A   AL+  P   +    LG  L++QGR+ EA   LR    A  D P
Sbjct: 6   AALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAADPDDP 65

Length = 65

>gnl|CDD|227343 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

 Score = 40.1 bits (94), Expect = 0.001
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 178 LLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNKMCN-LGICLMKQGRIGEAKETLR 233
           LL   G   ++  N+ EA    R+A  +AP + +  N LG  L + GR  EA+   R
Sbjct: 102 LLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYR 158

Length = 257

>gnl|CDD|188247 TIGR02795, tol_pal_ybgF, tol-pal system protein YbgF

 Score = 37.6 bits (88), Expect = 0.002
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 4/58 (6%)

Query: 182 LGWALMQQNNYIEAEDAYRRALSIAPDNNK----MCNLGICLMKQGRIGEAKETLRRV 235
           LG A   Q +Y +A  A+   +   P + K    +  LG+ L + G   +AK TL++V
Sbjct: 43  LGEAYYAQGDYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQV 100

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. Length = 117

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 36.2 bits (84), Expect = 0.003
 Identities = 9/32 (28%), Positives = 15/32 (46%)

Query: 177 RLLGNLGWALMQQNNYIEAEDAYRRALSIAPD 208
           R L NL    +   +Y EA +   +AL++   
Sbjct: 47  RALNNLARLYLALGDYDEALEYLEKALALREA 78

Length = 78

>gnl|CDD|221958 pfam13176, TPR_7, Tetratricopeptide repeat

 Score = 34.9 bits (81), Expect = 0.003
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 178 LLGNLGWALMQQNNYIEAEDAYRRALSIAPD 208
            L NLG    +  +Y +A   Y RAL++A D
Sbjct: 1   ALSNLGRLYRKLGDYEKAISLYERALALAKD 31

Length = 36

>gnl|CDD|227044 COG4700, COG4700, Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

 Score = 38.7 bits (90), Expect = 0.004
 Identities = 23/81 (28%), Positives = 30/81 (37%), Gaps = 1/81 (1%)

Query: 182 LGWALMQQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRV-KPAVA 240
               L  Q  Y +AE A+  A+S  P           L KQGR+ EA      V   A  
Sbjct: 166 FARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYVAVVDTAKR 225

Query: 241 DGPRGVDSHLKAYERAQQMLK 261
             P     H +  + A + LK
Sbjct: 226 SRPHYRKHHREWIKTANERLK 246

Length = 251

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	524
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.98
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.96
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.91
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.89
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.87
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.87
KOG1126	638	consensus DNA-binding cell division cycle control	99.86
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.84
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.84
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.83
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.83
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.82
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.82
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.82
PRK11189	296	lipoprotein NlpI; Provisional	99.82
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.82
KOG1126	638	consensus DNA-binding cell division cycle control	99.81
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.81
KOG1125	579	consensus TPR repeat-containing protein [General f	99.8
PRK12370	553	invasion protein regulator; Provisional	99.8
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.79
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.79
PRK12370	553	invasion protein regulator; Provisional	99.78
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.77
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.76
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.75
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.75
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.74
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.74
KOG1129	478	consensus TPR repeat-containing protein [General f	99.74
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.74
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.74
PRK11189	296	lipoprotein NlpI; Provisional	99.73
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.73
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.71
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.69
PLN02789	320	farnesyltranstransferase	99.68
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.68
KOG1125	579	consensus TPR repeat-containing protein [General f	99.67
KOG2076	895	consensus RNA polymerase III transcription factor	99.67
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.67
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.65
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.65
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.65
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.64
KOG2076	895	consensus RNA polymerase III transcription factor	99.64
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.63
PRK15359	144	type III secretion system chaperone protein SscB;	99.62
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.61
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.61
KOG1129	478	consensus TPR repeat-containing protein [General f	99.6
PLN02789	320	farnesyltranstransferase	99.59
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.59
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.59
KOG2003	840	consensus TPR repeat-containing protein [General f	99.57
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.57
PRK15359	144	type III secretion system chaperone protein SscB;	99.57
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.56
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.55
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.53
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.53
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.52
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.51
PRK14574	822	hmsH outer membrane protein; Provisional	99.51
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.51
PRK14574	822	hmsH outer membrane protein; Provisional	99.49
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.48
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.48
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.47
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.47
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.46
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.45
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.42
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.41
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.41
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.4
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.4
KOG0553	304	consensus TPR repeat-containing protein [General f	99.39
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.38
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.36
KOG2003	840	consensus TPR repeat-containing protein [General f	99.35
KOG0553	304	consensus TPR repeat-containing protein [General f	99.34
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.34
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.33
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.31
PLN03218	1060	maturation of RBCL 1; Provisional	99.3
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.29
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.28
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.26
KOG3060	289	consensus Uncharacterized conserved protein [Funct	99.25
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.25
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.25
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.25
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.25
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.23
PLN03218	1060	maturation of RBCL 1; Provisional	99.22
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.22
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.21
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.19
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.18
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.16
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.15
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.15
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	99.15
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.13
PLN03077	857	Protein ECB2; Provisional	99.11
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.11
KOG3060	289	consensus Uncharacterized conserved protein [Funct	99.1
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.1
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.08
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	99.07
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.06
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.05
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	99.05
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.04
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.04
PLN03077	857	Protein ECB2; Provisional	99.04
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.03
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.02
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.0
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.0
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.0
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.99
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.99
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.98
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.96
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.95
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.95
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.93
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.93
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.92
KOG3785	557	consensus Uncharacterized conserved protein [Funct	98.91
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.9
PRK11906	458	transcriptional regulator; Provisional	98.9
KOG3785	557	consensus Uncharacterized conserved protein [Funct	98.88
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.88
PRK04841	903	transcriptional regulator MalT; Provisional	98.88
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.87
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.86
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.85
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.84
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.83
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.82
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.82
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.82
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	98.8
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.8
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.8
PRK15331	165	chaperone protein SicA; Provisional	98.79
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.77
PRK10803	263	tol-pal system protein YbgF; Provisional	98.76
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.74
PRK10803	263	tol-pal system protein YbgF; Provisional	98.74
PF12688	120	TPR_5: Tetratrico peptide repeat	98.72
PRK11906	458	transcriptional regulator; Provisional	98.72
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.68
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.68
PRK15331	165	chaperone protein SicA; Provisional	98.67
PRK04841	903	transcriptional regulator MalT; Provisional	98.66
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.62
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.62
PF12688	120	TPR_5: Tetratrico peptide repeat	98.6
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.6
KOG1915	677	consensus Cell cycle control protein (crooked neck	98.58
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.58
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.52
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.51
KOG4555	175	consensus TPR repeat-containing protein [Function	98.5
KOG4234	271	consensus TPR repeat-containing protein [General f	98.49
PF13371	73	TPR_9: Tetratricopeptide repeat	98.46
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.44
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.44
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.44
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.43
KOG1915	677	consensus Cell cycle control protein (crooked neck	98.41
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.41
PF13371	73	TPR_9: Tetratricopeptide repeat	98.41
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.38
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.37
KOG1941	518	consensus Acetylcholine receptor-associated protei	98.36
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.36
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.35
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.35
KOG1941	518	consensus Acetylcholine receptor-associated protei	98.35
PF13512	142	TPR_18: Tetratricopeptide repeat	98.31
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.3
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.27
KOG4555	175	consensus TPR repeat-containing protein [Function	98.26
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.23
PF13512	142	TPR_18: Tetratricopeptide repeat	98.21
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.19
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.17
KOG4234	271	consensus TPR repeat-containing protein [General f	98.16
COG3898	531	Uncharacterized membrane-bound protein [Function u	98.16
KOG2796	366	consensus Uncharacterized conserved protein [Funct	98.1
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.09
KOG2047	835	consensus mRNA splicing factor [RNA processing and	98.06
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.04
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.03
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.99
KOG2047	835	consensus mRNA splicing factor [RNA processing and	97.99
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.98
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.97
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	97.94
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.94
PF13428	44	TPR_14: Tetratricopeptide repeat	97.92
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.91
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.9
KOG2610	491	consensus Uncharacterized conserved protein [Funct	97.84
PF13428	44	TPR_14: Tetratricopeptide repeat	97.84
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.82
KOG2610	491	consensus Uncharacterized conserved protein [Funct	97.82
KOG1586	288	consensus Protein required for fusion of vesicles	97.74
KOG1586	288	consensus Protein required for fusion of vesicles	97.73
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.72
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	97.71
PF13431	34	TPR_17: Tetratricopeptide repeat	97.68
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.68
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	97.63
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.63
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.62
COG3898	531	Uncharacterized membrane-bound protein [Function u	97.62
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.57
PF13431	34	TPR_17: Tetratricopeptide repeat	97.49
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.44
KOG2471	696	consensus TPR repeat-containing protein [General f	97.43
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.4
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.35
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.33
KOG1585	308	consensus Protein required for fusion of vesicles	97.33
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	97.32
KOG1585	308	consensus Protein required for fusion of vesicles	97.29
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.29
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.26
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.26
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.25
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.24
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.22
KOG4507	886	consensus Uncharacterized conserved protein, conta	97.18
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.16
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	97.16
KOG2471	696	consensus TPR repeat-containing protein [General f	97.11
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	96.98
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.97
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.91
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	96.88
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	96.85
KOG3616	1636	consensus Selective LIM binding factor [Transcript	96.82
KOG1550	552	consensus Extracellular protein SEL-1 and related	96.81
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	96.76
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	96.74
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	96.72
KOG2300	629	consensus Uncharacterized conserved protein [Funct	96.72
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	96.69
KOG3616	1636	consensus Selective LIM binding factor [Transcript	96.66
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	96.64
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.58
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	96.55
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	96.53
KOG2300	629	consensus Uncharacterized conserved protein [Funct	96.5
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.42
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	96.4
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.36
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.35
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	96.32
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	96.17
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	96.13
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.04
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	96.01
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	95.95
KOG1550	552	consensus Extracellular protein SEL-1 and related	95.92
PRK10941	269	hypothetical protein; Provisional	95.86
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	95.85
KOG4507	886	consensus Uncharacterized conserved protein, conta	95.82
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	95.78
KOG2041	1189	consensus WD40 repeat protein [General function pr	95.74
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	95.73
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	95.63
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	95.61
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	95.45
PRK10941	269	hypothetical protein; Provisional	95.45
KOG1258	577	consensus mRNA processing protein [RNA processing	95.38
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	95.32
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	95.22
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	95.12
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	95.11
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	95.0
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	95.0
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	94.94
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	94.94
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	94.9
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	94.88
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	94.86
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	94.85
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	94.85
KOG1258	577	consensus mRNA processing protein [RNA processing	94.82
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	94.81
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	94.81
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	94.8
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	94.77
KOG3783	546	consensus Uncharacterized conserved protein [Funct	94.63
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	94.56
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	94.49
KOG2041	1189	consensus WD40 repeat protein [General function pr	94.3
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	94.29
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	94.16
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	93.75
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	93.56
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	93.52
COG4976	287	Predicted methyltransferase (contains TPR repeat)	93.46
KOG3807	556	consensus Predicted membrane protein ST7 (tumor su	93.4
COG4976	287	Predicted methyltransferase (contains TPR repeat)	93.19
KOG2581	493	consensus 26S proteasome regulatory complex, subun	93.16
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	93.15
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	93.07
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	93.04
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	92.83
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	92.75
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	92.46
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	92.37
KOG1310	758	consensus WD40 repeat protein [General function pr	92.29
KOG2422	665	consensus Uncharacterized conserved protein [Funct	91.84
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	91.82
COG3629	280	DnrI DNA-binding transcriptional activator of the	91.82
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	91.71
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	91.45
KOG1310	758	consensus WD40 repeat protein [General function pr	91.44
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	91.21
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	90.79
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	90.58
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	90.34
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	90.17
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	89.91
KOG3364	149	consensus Membrane protein involved in organellar	89.91
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	89.85
KOG4814	872	consensus Uncharacterized conserved protein [Funct	89.79
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	89.78
COG2912	269	Uncharacterized conserved protein [Function unknow	89.75
KOG4814	872	consensus Uncharacterized conserved protein [Funct	89.72
KOG3364	149	consensus Membrane protein involved in organellar	89.67
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	89.64
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	89.58
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	89.39
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	88.57
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	88.17
COG3629	280	DnrI DNA-binding transcriptional activator of the	88.07
KOG2422	665	consensus Uncharacterized conserved protein [Funct	87.34
COG2912	269	Uncharacterized conserved protein [Function unknow	87.28
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	87.12
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	87.06
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	87.04
COG1747	711	Uncharacterized N-terminal domain of the transcrip	86.76
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	86.56
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	86.36
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	85.72
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	85.5
COG4455	273	ImpE Protein of avirulence locus involved in tempe	85.12
COG4941	415	Predicted RNA polymerase sigma factor containing a	84.83
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	84.51
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	84.48
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	84.37
KOG3807	556	consensus Predicted membrane protein ST7 (tumor su	83.8
COG5159	421	RPN6 26S proteasome regulatory complex component [	83.65
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	83.06
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	81.77
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	81.37
smart00299	140	CLH Clathrin heavy chain repeat homology.	81.17
PF00244	236	14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14	80.92
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	80.36
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	80.34

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.98  E-value=1.9e-31  Score=270.22  Aligned_cols=289  Identities=17%  Similarity=0.121  Sum_probs=220.6

Q ss_pred             CCccchhh-hhhhHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 009850           24 KPLGVSRT-RSDSFHAIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEA  102 (524)
Q Consensus        24 ~~~~~l~~-~~~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~  102 (524)
                      +..|++.+ ....++++...|.-.-+|.+||.++..+|+...|+.+|.+|++++|+..++|.+||.+|...+.+++|+.+
T Consensus       195 ka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~  274 (966)
T KOG4626|consen  195 KAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSC  274 (966)
T ss_pred             HhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHH
Confidence            33443333 44455666666666666777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccH--------hhhc-ccHHHHHHHhHHHHHhcCC
Q 009850          103 IKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGL--------AFNG-KRTKTARSQGKKFQVSVEQ  173 (524)
Q Consensus       103 ~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~--------~~~~-~~~~~a~~~~~~~~~~~~p  173 (524)
                      |.+++...|.++  .++-.+|.+|+.+|..+-|+..|++++++.+.-.        ++.. +...+++.+.. ..+.+.|
T Consensus       275 Y~rAl~lrpn~A--~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYn-kaL~l~p  351 (966)
T KOG4626|consen  275 YLRALNLRPNHA--VAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYN-KALRLCP  351 (966)
T ss_pred             HHHHHhcCCcch--hhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHH-HHHHhCC
Confidence            777777777776  5666777777777777777777777777653222        2222 12222222211 1234489


Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCC---------
Q 009850          174 EATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGP---------  243 (524)
Q Consensus       174 ~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~---------  243 (524)
                      .++++.+|||++|..+|.+++|...|.++++..|+... +.|||.+|.++|++++|+.+|+.++...|.-.         
T Consensus       352 ~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt  431 (966)
T KOG4626|consen  352 NHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNT  431 (966)
T ss_pred             ccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchH
Confidence            99999999999999999999999999999999999988 99999999999999999999999866555432         


Q ss_pred             ----cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCcccccccccccccccccc
Q 009850          244 ----RGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTTNAIKTRDDFADEN  317 (524)
Q Consensus       244 ----~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~l~~~~l~~~~q~lgd~~  317 (524)
                          |+.+.|+..|.+++..+|.+++++.|||.+|...|+..+||..|+.++++.|+.+...  .+++++.|-+-|..
T Consensus       432 ~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~--cNllh~lq~vcdw~  507 (966)
T KOG4626|consen  432 YKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAY--CNLLHCLQIVCDWT  507 (966)
T ss_pred             HHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhh--hHHHHHHHHHhccc
Confidence                7788899999999999999999999999999999999999999999999999998865  24777766555443

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.96  E-value=1.8e-28  Score=248.73  Aligned_cols=304  Identities=18%  Similarity=0.157  Sum_probs=258.1

Q ss_pred             cccCCCCCCCCCCCCCCCCCCccchhhh-hhhHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHH
Q 009850            5 MWNAPPGFRPTKSAPSSPAKPLGVSRTR-SDSFHAIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSAL   83 (524)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~   83 (524)
                      ++..-|.+.-.++..++.....+.+..+ ..-+.++...|....+...+|..+-..|+..+|..+|.+|++.+|..+-+|
T Consensus       142 aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiaw  221 (966)
T KOG4626|consen  142 AIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAW  221 (966)
T ss_pred             HHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeee
Confidence            4445555555566655555555554443 445578888898877888999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHh---------hhc
Q 009850           84 KDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLA---------FNG  154 (524)
Q Consensus        84 ~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~---------~~~  154 (524)
                      .+||-++..+|+...|+..|+++++++|...  .++..||.+|...+.+++|+.+|.+++.+.+....         +.+
T Consensus       222 snLg~~f~~~Gei~~aiq~y~eAvkldP~f~--dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeq  299 (966)
T KOG4626|consen  222 SNLGCVFNAQGEIWLAIQHYEEAVKLDPNFL--DAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQ  299 (966)
T ss_pred             hhcchHHhhcchHHHHHHHHHHhhcCCCcch--HHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEecc
Confidence            9999999999999999999999999999997  78899999999999999999999999988754433         222


Q ss_pred             ccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHH
Q 009850          155 KRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLR  233 (524)
Q Consensus       155 ~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~  233 (524)
                      +..+.+....+. .+.++|+.+++++|||+++-..|+..+|+++|.++|.+.|.+++ .+|||.+|.++|.+++|...|.
T Consensus       300 G~ldlAI~~Ykr-al~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~  378 (966)
T KOG4626|consen  300 GLLDLAIDTYKR-ALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYL  378 (966)
T ss_pred             ccHHHHHHHHHH-HHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHH
Confidence            344444333222 24558999999999999999999999999999999999999999 9999999999999999999999


Q ss_pred             HhcccccCCC-------------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCc
Q 009850          234 RVKPAVADGP-------------RGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHI  300 (524)
Q Consensus       234 ~a~~~~~~~~-------------~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~  300 (524)
                      +++..+|+-.             +.+++|+.+|++++.+.|..++++.|+|..|..+|+...|+.+|.++++.+|...+.
T Consensus       379 ~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeA  458 (966)
T KOG4626|consen  379 KALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEA  458 (966)
T ss_pred             HHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHH
Confidence            9987776542             889999999999999999999999999999999999999999999999999998887


Q ss_pred             ccccccccccc
Q 009850          301 LPTTNAIKTRD  311 (524)
Q Consensus       301 l~~~~l~~~~q  311 (524)
                      ..+++.+|-..
T Consensus       459 hsNLasi~kDs  469 (966)
T KOG4626|consen  459 HSNLASIYKDS  469 (966)
T ss_pred             HhhHHHHhhcc
Confidence            76645555433

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.91  E-value=2.3e-22  Score=221.46  Aligned_cols=229  Identities=11%  Similarity=0.038  Sum_probs=213.8

Q ss_pred             CCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 009850           43 PVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNIL  122 (524)
Q Consensus        43 p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~l  122 (524)
                      |....+|..+|.+++..|++++|+..|++++..+|++..+|..+|.++..+|++++|+..|++++..+|+++  .+++.+
T Consensus       328 ~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~--~~~~~l  405 (615)
T TIGR00990       328 EKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDP--DIYYHR  405 (615)
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH--HHHHHH
Confidence            556678999999999999999999999999999999999999999999999999999999999999999997  788999


Q ss_pred             HHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009850          123 LDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRA  202 (524)
Q Consensus       123 g~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~A  202 (524)
                      |.++...|++++|+.+|++++.+                          +|++..++.++|.++...|++++|+..|+++
T Consensus       406 g~~~~~~g~~~~A~~~~~kal~l--------------------------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~a  459 (615)
T TIGR00990       406 AQLHFIKGEFAQAGKDYQKSIDL--------------------------DPDFIFSHIQLGVTQYKEGSIASSMATFRRC  459 (615)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHc--------------------------CccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            99999999999999999999998                          8999999999999999999999999999999


Q ss_pred             HhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCC--------------------CcCHHHHHHHHHHHHHhCC
Q 009850          203 LSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADG--------------------PRGVDSHLKAYERAQQMLK  261 (524)
Q Consensus       203 l~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~--------------------~~~~~~A~~~~~~al~~~p  261 (524)
                      +...|+++. +..+|.++..+|++++|+..|++++...+..                    .+++++|...+++++..+|
T Consensus       460 l~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p  539 (615)
T TIGR00990       460 KKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDP  539 (615)
T ss_pred             HHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence            999999999 9999999999999999999999997665542                    1567789999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCC
Q 009850          262 DLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  299 (524)
Q Consensus       262 ~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~  299 (524)
                      +...++..+|.++..+|++++|+..|++++++.+....
T Consensus       540 ~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e  577 (615)
T TIGR00990       540 ECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE  577 (615)
T ss_pred             CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence            99999999999999999999999999999988765444

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.89  E-value=9.2e-21  Score=208.71  Aligned_cols=248  Identities=14%  Similarity=0.118  Sum_probs=183.0

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 009850           48 PYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYK  127 (524)
Q Consensus        48 ~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~  127 (524)
                      .+..+|..++..|+|++|+..|.+++...|+ +..+.++|.||..+|++++|+..++++++++|++.  .+++.+|.+|.
T Consensus       129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~--~a~~~~a~a~~  205 (615)
T TIGR00990       129 KLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYS--KALNRRANAYD  205 (615)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCH--HHHHHHHHHHH
Confidence            3556666666666666666666666666664 45566666666666666666666666666666654  45555566666


Q ss_pred             HcCChHHHHH----------------------------------------------------------------------
Q 009850          128 RCGRLDDQIA----------------------------------------------------------------------  137 (524)
Q Consensus       128 ~~g~~~eA~~----------------------------------------------------------------------  137 (524)
                      .+|++++|+.                                                                      
T Consensus       206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (615)
T TIGR00990       206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE  285 (615)
T ss_pred             HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence            6666655543                                                                      


Q ss_pred             ------------------------------HHHHHHHHh---h--------ccHhh-hcccHHHHHHHhHHHHHhcCCCc
Q 009850          138 ------------------------------LLKHKLYLI---Q--------QGLAF-NGKRTKTARSQGKKFQVSVEQEA  175 (524)
Q Consensus       138 ------------------------------~~~~al~l~---~--------~~~~~-~~~~~~~a~~~~~~~~~~~~p~~  175 (524)
                                                    .|++++...   +        .+..+ ..+..+.+...... .+.++|+.
T Consensus       286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~k-al~l~P~~  364 (615)
T TIGR00990       286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSK-SIELDPRV  364 (615)
T ss_pred             cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHcCCCc
Confidence                                          333333321   0        00011 11233333333222 14558999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCC-----------
Q 009850          176 TRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGP-----------  243 (524)
Q Consensus       176 ~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~-----------  243 (524)
                      ..+|..+|.++...|++++|+.+|+++++.+|+++. |+++|.++..+|++++|+.+|++++...|+..           
T Consensus       365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~  444 (615)
T TIGR00990       365 TQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQY  444 (615)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999 99999999999999999999999988877753           


Q ss_pred             --cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCC
Q 009850          244 --RGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  299 (524)
Q Consensus       244 --~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~  299 (524)
                        +++++|+..|++++...|+.+.++..+|.++..+|++++|+..|++++..+|....
T Consensus       445 ~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~  502 (615)
T TIGR00990       445 KEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKP  502 (615)
T ss_pred             HCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcccc
Confidence              77899999999999999999999999999999999999999999999999987654

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.87  E-value=7.7e-20  Score=201.71  Aligned_cols=260  Identities=12%  Similarity=0.077  Sum_probs=168.4

Q ss_pred             HHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 009850           38 AIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQES  117 (524)
Q Consensus        38 ~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~  117 (524)
                      .+...|..+++++.+|.+....|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++.++|++.  .
T Consensus        68 ~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~--~  145 (656)
T PRK15174         68 RVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNS--Q  145 (656)
T ss_pred             HHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH--H
Confidence            34456777777888888888888888888888888888888888888888888888888888888888888888776  5


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHh--------hhcccHHHHHHHhHHH----------------------
Q 009850          118 LDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLA--------FNGKRTKTARSQGKKF----------------------  167 (524)
Q Consensus       118 l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~--------~~~~~~~~a~~~~~~~----------------------  167 (524)
                      ++..++.++...|++++|+..+++++...+....        +..+....+....+..                      
T Consensus       146 a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~  225 (656)
T PRK15174        146 IFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAV  225 (656)
T ss_pred             HHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHC
Confidence            6667777777778887777777766654422111        1111222222111111                      


Q ss_pred             ------------HHhcCCCcHHHHHHHHHHHHHcCCHHH----HHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHH
Q 009850          168 ------------QVSVEQEATRLLGNLGWALMQQNNYIE----AEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKE  230 (524)
Q Consensus       168 ------------~~~~~p~~~~a~~~Lg~~~~~~g~~~e----Ai~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~  230 (524)
                                  .+..+|+++.+++++|.++...|++++    |+..|++++.++|++.. +.++|.++..+|++++|+.
T Consensus       226 g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~  305 (656)
T PRK15174        226 GKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIP  305 (656)
T ss_pred             CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence                        123356666666666666666666664    56666666666666666 6666666666666666666


Q ss_pred             HHHHhcccccCCC-------------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCC
Q 009850          231 TLRRVKPAVADGP-------------RGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCK  297 (524)
Q Consensus       231 ~~~~a~~~~~~~~-------------~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~  297 (524)
                      .+++++...|+..             +++++|+..|++++...|+....+..+|.++...|++++|+..|+++++.+|.+
T Consensus       306 ~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~  385 (656)
T PRK15174        306 LLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASH  385 (656)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhh
Confidence            6666655555543             555666666666666666666555556666666666666666666666666664


Q ss_pred             CC
Q 009850          298 DH  299 (524)
Q Consensus       298 ~~  299 (524)
                      ..
T Consensus       386 ~~  387 (656)
T PRK15174        386 LP  387 (656)
T ss_pred             ch
Confidence            43

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.87  E-value=1.2e-19  Score=200.08  Aligned_cols=257  Identities=11%  Similarity=0.050  Sum_probs=194.0

Q ss_pred             chhhhhhhHH-HHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009850           28 VSRTRSDSFH-AIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSL  106 (524)
Q Consensus        28 ~l~~~~~~~~-~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~a  106 (524)
                      ....+...+. .+...|..+.+|..+|.++...|++++|+..|++++..+|++..++..+|.++...|++++|+..++++
T Consensus        91 ~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~  170 (656)
T PRK15174         91 QPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQ  170 (656)
T ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence            3444444444 345568889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCcHHHHHH--------------------------------HHHHHHHHHcCChHHHHHHHHHHHHHhhccHh---
Q 009850          107 RSRCSDQAQESLD--------------------------------NILLDLYKRCGRLDDQIALLKHKLYLIQQGLA---  151 (524)
Q Consensus       107 l~~~p~~~~~~l~--------------------------------~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~---  151 (524)
                      +...|+++.....                                ..++.++...|++++|+..|+++++..+....   
T Consensus       171 ~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~  250 (656)
T PRK15174        171 AQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRR  250 (656)
T ss_pred             HHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHH
Confidence            8888876521110                                11233444455555555555555554422211   


Q ss_pred             -----hh-cccHHH-----HHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHH
Q 009850          152 -----FN-GKRTKT-----ARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICL  219 (524)
Q Consensus       152 -----~~-~~~~~~-----a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~  219 (524)
                           +. .+....     ...+.+.  +..+|+++.++.++|.++...|++++|+..|++++.++|+++. +.++|.++
T Consensus       251 ~Lg~~l~~~G~~~eA~~~A~~~~~~A--l~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l  328 (656)
T PRK15174        251 SLGLAYYQSGRSREAKLQAAEHWRHA--LQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARAL  328 (656)
T ss_pred             HHHHHHHHcCCchhhHHHHHHHHHHH--HhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence                 11 122221     1222222  4558999999999999999999999999999999999999999 99999999


Q ss_pred             HHcCCHHHHHHHHHHhcccccCCC-------------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 009850          220 MKQGRIGEAKETLRRVKPAVADGP-------------RGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLG  286 (524)
Q Consensus       220 ~~~G~~~eA~~~~~~a~~~~~~~~-------------~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~  286 (524)
                      ...|++++|+..|+++....|...             ++.++|+..|+++++..|+...            ..+.+|+..
T Consensus       329 ~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~------------~~~~ea~~~  396 (656)
T PRK15174        329 RQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLP------------QSFEEGLLA  396 (656)
T ss_pred             HHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhch------------hhHHHHHHH
Confidence            999999999999999977666652             7889999999999999998752            445577777


Q ss_pred             HhhcccCCCCCC
Q 009850          287 SSSIWQPQPCKD  298 (524)
Q Consensus       287 ~~~al~~~P~~~  298 (524)
                      |..++...+...
T Consensus       397 ~~~~~~~~~~~~  408 (656)
T PRK15174        397 LDGQISAVNLPP  408 (656)
T ss_pred             HHHHHHhcCCcc
Confidence            777776554443

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.86  E-value=3.9e-21  Score=198.67  Aligned_cols=211  Identities=17%  Similarity=0.117  Sum_probs=190.4

Q ss_pred             hcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 009850           40 HKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLD  119 (524)
Q Consensus        40 ~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~  119 (524)
                      ...|..+++|-.+|+++-.+++++.|+++|++|++++|++..+|..+|.-+.....+|.|..+|+.|+..+|.+-  ++|
T Consensus       415 ~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhY--nAw  492 (638)
T KOG1126|consen  415 DTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHY--NAW  492 (638)
T ss_pred             hhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhh--HHH
Confidence            345778888999999999999999999999999999999999999999999999999999999999999988874  888


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 009850          120 NILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAY  199 (524)
Q Consensus       120 ~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~  199 (524)
                      +-+|.+|.++++++.|+-.|++|+++                          +|.+......+|.++.+.|+.++|+..|
T Consensus       493 YGlG~vy~Kqek~e~Ae~~fqkA~~I--------------------------NP~nsvi~~~~g~~~~~~k~~d~AL~~~  546 (638)
T KOG1126|consen  493 YGLGTVYLKQEKLEFAEFHFQKAVEI--------------------------NPSNSVILCHIGRIQHQLKRKDKALQLY  546 (638)
T ss_pred             HhhhhheeccchhhHHHHHHHhhhcC--------------------------CccchhHHhhhhHHHHHhhhhhHHHHHH
Confidence            88899999999999999999999888                          8888888899999999999999999999


Q ss_pred             HHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 009850          200 RRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQS  278 (524)
Q Consensus       200 ~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g  278 (524)
                      ++|+.++|.++. .+..|.++..++++++|+..++                     +..++.|+...+++.+|.+|.+.|
T Consensus       547 ~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LE---------------------eLk~~vP~es~v~~llgki~k~~~  605 (638)
T KOG1126|consen  547 EKAIHLDPKNPLCKYHRASILFSLGRYVEALQELE---------------------ELKELVPQESSVFALLGKIYKRLG  605 (638)
T ss_pred             HHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHH---------------------HHHHhCcchHHHHHHHHHHHHHHc
Confidence            999999999988 8889999999999999988888                     788889999999999999999999


Q ss_pred             CHHHHHHHHhhcccCCCCCCC
Q 009850          279 RLFDAFLGSSSIWQPQPCKDH  299 (524)
Q Consensus       279 ~~~eAi~~~~~al~~~P~~~~  299 (524)
                      +.+.|+..|.-|++++|.-..
T Consensus       606 ~~~~Al~~f~~A~~ldpkg~~  626 (638)
T KOG1126|consen  606 NTDLALLHFSWALDLDPKGAQ  626 (638)
T ss_pred             cchHHHHhhHHHhcCCCccch
Confidence            999999999999999997554

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.84  E-value=7.2e-19  Score=206.13  Aligned_cols=270  Identities=12%  Similarity=0.042  Sum_probs=199.1

Q ss_pred             hhhhhhhHH-HHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHH--------------HHHHHHHHHHc
Q 009850           29 SRTRSDSFH-AIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSA--------------LKDMAIVMKQQ   93 (524)
Q Consensus        29 l~~~~~~~~-~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a--------------~~~La~~~~~~   93 (524)
                      ...+...+. ++...|...++++.+|.+++..|++++|+.+|+++++.+|++...              ...+|.++...
T Consensus       285 ~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~  364 (1157)
T PRK11447        285 GGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKA  364 (1157)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHC
Confidence            344444444 445568888899999999999999999999999999988876431              23457888889


Q ss_pred             CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhh--------hcccHH-------
Q 009850           94 NRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAF--------NGKRTK-------  158 (524)
Q Consensus        94 g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~--------~~~~~~-------  158 (524)
                      |++++|+..|++++..+|++.  .++..+|.+|...|++++|+.+|++++++.+.....        .....+       
T Consensus       365 g~~~eA~~~~~~Al~~~P~~~--~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~  442 (1157)
T PRK11447        365 NNLAQAERLYQQARQVDNTDS--YAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIA  442 (1157)
T ss_pred             CCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            999999999999999999887  567788999999999999999999999886443211        000011       


Q ss_pred             ------------------------------------HHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009850          159 ------------------------------------TARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRA  202 (524)
Q Consensus       159 ------------------------------------~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~A  202 (524)
                                                          .+....+ ..+.++|+++.+++.+|.+|...|++++|+..|+++
T Consensus       443 ~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~-~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~a  521 (1157)
T PRK11447        443 SLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQR-QRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRL  521 (1157)
T ss_pred             hCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHH-HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence                                                1111111 013457888888888888888888888888888888


Q ss_pred             HhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcc----------------------------------------cccC
Q 009850          203 LSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKP----------------------------------------AVAD  241 (524)
Q Consensus       203 l~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~----------------------------------------~~~~  241 (524)
                      +..+|+++. ++.+|..+...|++++|+..++++..                                        ..|.
T Consensus       522 l~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~  601 (1157)
T PRK11447        522 AQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPP  601 (1157)
T ss_pred             HHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCC
Confidence            888888777 66666666666666666666554311                                        1112


Q ss_pred             CC-------------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCcc
Q 009850          242 GP-------------RGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL  301 (524)
Q Consensus       242 ~~-------------~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~l  301 (524)
                      ..             ++.++|+..|+++++..|++..++.+++.++...|++++|+..++.++...|.+....
T Consensus       602 ~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~  674 (1157)
T PRK11447        602 STRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQ  674 (1157)
T ss_pred             CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHH
Confidence            11             6778888999999999999999999999999999999999999998888888776644

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.84  E-value=1.4e-18  Score=196.58  Aligned_cols=231  Identities=14%  Similarity=0.047  Sum_probs=157.4

Q ss_pred             CC--ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 009850           43 PV--GDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDN  120 (524)
Q Consensus        43 p~--~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~  120 (524)
                      |.  .+.+|+.+|.++.. |++++|+..|.+++...|++. ....+|.++...|++++|+..|++++...|.+.   .+.
T Consensus       472 p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~---a~~  546 (987)
T PRK09782        472 SPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMSNE---DLL  546 (987)
T ss_pred             CCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcH---HHH
Confidence            55  78899999999987 899999999999999999864 466778888899999999999999888766653   356


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHhhccHhh------hc---ccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 009850          121 ILLDLYKRCGRLDDQIALLKHKLYLIQQGLAF------NG---KRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNN  191 (524)
Q Consensus       121 ~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~------~~---~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~  191 (524)
                      .+|.++...|++++|+.+|++++...+.....      ..   +..+.+....+.. +..+|+ +.++.++|.++.+.|+
T Consensus       547 ~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~A-L~l~P~-~~a~~~LA~~l~~lG~  624 (987)
T PRK09782        547 AAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRS-LNIAPS-ANAYVARATIYRQRHN  624 (987)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHH-HHhCCC-HHHHHHHHHHHHHCCC
Confidence            77889999999999999999999883221110      00   2222222221111 223454 5555566666666666


Q ss_pred             HHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 009850          192 YIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNK  270 (524)
Q Consensus       192 ~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l  270 (524)
                      +++|+.+|++++.++|+++. +.++|.++...|++++|+..|+                     ++++..|+++.+++++
T Consensus       625 ~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~---------------------~AL~l~P~~~~a~~nL  683 (987)
T PRK09782        625 VPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLE---------------------RAHKGLPDDPALIRQL  683 (987)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH---------------------HHHHhCCCCHHHHHHH
Confidence            66666666666666666555 5556666666666666665555                     6666666666666666


Q ss_pred             HHHHHHcCCHHHHHHHHhhcccCCCCCCCcc
Q 009850          271 GGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL  301 (524)
Q Consensus       271 g~~~~~~g~~~eAi~~~~~al~~~P~~~~~l  301 (524)
                      |.++..+|++++|+..|++++..+|.+..+.
T Consensus       684 A~al~~lGd~~eA~~~l~~Al~l~P~~a~i~  714 (987)
T PRK09782        684 AYVNQRLDDMAATQHYARLVIDDIDNQALIT  714 (987)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhcCCCCchhh
Confidence            6666666666666666666666666655533

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.83  E-value=4.9e-18  Score=161.65  Aligned_cols=203  Identities=16%  Similarity=0.108  Sum_probs=182.9

Q ss_pred             ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 009850           45 GDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLD  124 (524)
Q Consensus        45 ~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~  124 (524)
                      ....++.+|..++..|++++|+..+++++..+|++..++..+|.++...|++++|+..+++++...|.+.  ..+..+|.
T Consensus        30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~  107 (234)
T TIGR02521        30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNG--DVLNNYGT  107 (234)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH--HHHHHHHH
Confidence            4567899999999999999999999999999999999999999999999999999999999999999886  67788899


Q ss_pred             HHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009850          125 LYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALS  204 (524)
Q Consensus       125 ~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~  204 (524)
                      ++...|++++|+..|++++...                        ..+.....+.++|.++...|++++|+..|.+++.
T Consensus       108 ~~~~~g~~~~A~~~~~~~~~~~------------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  163 (234)
T TIGR02521       108 FLCQQGKYEQAMQQFEQAIEDP------------------------LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQ  163 (234)
T ss_pred             HHHHcccHHHHHHHHHHHHhcc------------------------ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            9999999999999999998651                        0245677899999999999999999999999999


Q ss_pred             hCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 009850          205 IAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDA  283 (524)
Q Consensus       205 l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA  283 (524)
                      .+|++.. +..+|.++...|++++|+..++                     +++...|.....+..++.++...|+.++|
T Consensus       164 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  222 (234)
T TIGR02521       164 IDPQRPESLLELAELYYLRGQYKDARAYLE---------------------RYQQTYNQTAESLWLGIRIARALGDVAAA  222 (234)
T ss_pred             hCcCChHHHHHHHHHHHHcCCHHHHHHHHH---------------------HHHHhCCCCHHHHHHHHHHHHHHhhHHHH
Confidence            9999988 9999999999999999999999                     45555677888888999999999999999


Q ss_pred             HHHHhhcccCC
Q 009850          284 FLGSSSIWQPQ  294 (524)
Q Consensus       284 i~~~~~al~~~  294 (524)
                      ....+.+....
T Consensus       223 ~~~~~~~~~~~  233 (234)
T TIGR02521       223 QRYGAQLQKLF  233 (234)
T ss_pred             HHHHHHHHhhC
Confidence            98877665443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.83  E-value=1.8e-18  Score=195.65  Aligned_cols=222  Identities=11%  Similarity=0.050  Sum_probs=152.6

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCC
Q 009850           52 AKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGR  131 (524)
Q Consensus        52 lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~  131 (524)
                      +|..+...|++++|+..|++++...|.+ ..++.+|.++...|++++|+.+|++++..+|+..  .++..++..+...|+
T Consensus       515 lA~al~~~Gr~eeAi~~~rka~~~~p~~-~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~--~l~~~La~~l~~~Gr  591 (987)
T PRK09782        515 VAYQAYQVEDYATALAAWQKISLHDMSN-EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDN--ALYWWLHAQRYIPGQ  591 (987)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHhccCCCc-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccH--HHHHHHHHHHHhCCC
Confidence            3444445555555555555554443332 3344555555555555555555555555555443  222333333334455


Q ss_pred             hHHHHHHHHHHHHHhhccHh-------hh-cccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009850          132 LDDQIALLKHKLYLIQQGLA-------FN-GKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRAL  203 (524)
Q Consensus       132 ~~eA~~~~~~al~l~~~~~~-------~~-~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al  203 (524)
                      +++|+..|++++++.+....       +. .+..+.+....+. .+..+|+++.+++++|.++...|++++|+..|++++
T Consensus       592 ~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~-AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL  670 (987)
T PRK09782        592 PELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRA-ALELEPNNSNYQAALGYALWDSGDIAQSREMLERAH  670 (987)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            55555555555554432111       00 0122222221111 123399999999999999999999999999999999


Q ss_pred             hhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 009850          204 SIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFD  282 (524)
Q Consensus       204 ~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~e  282 (524)
                      +++|+++. ++++|.++..+|++++|+.+|+                     +++...|+.+......|.+.....++..
T Consensus       671 ~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~---------------------~Al~l~P~~a~i~~~~g~~~~~~~~~~~  729 (987)
T PRK09782        671 KGLPDDPALIRQLAYVNQRLDDMAATQHYAR---------------------LVIDDIDNQALITPLTPEQNQQRFNFRR  729 (987)
T ss_pred             HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH---------------------HHHhcCCCCchhhhhhhHHHHHHHHHHH
Confidence            99999999 9999999999999999999999                     8889999999999999999999999999


Q ss_pred             HHHHHhhcccCCCCCC
Q 009850          283 AFLGSSSIWQPQPCKD  298 (524)
Q Consensus       283 Ai~~~~~al~~~P~~~  298 (524)
                      |...|+++|..+|...
T Consensus       730 a~~~~~r~~~~~~~~~  745 (987)
T PRK09782        730 LHEEVGRRWTFSFDSS  745 (987)
T ss_pred             HHHHHHHHhhcCccch
Confidence            9999999999999866

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.82  E-value=2.7e-18  Score=195.65  Aligned_cols=267  Identities=16%  Similarity=0.094  Sum_probs=222.5

Q ss_pred             hhhhhhHHH-HhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 009850           30 RTRSDSFHA-IHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRS  108 (524)
Q Consensus        30 ~~~~~~~~~-~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~  108 (524)
                      ..+...+.. +...|.....|..+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++.
T Consensus       584 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  663 (899)
T TIGR02917       584 KKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALE  663 (899)
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            334444443 3456778889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHh--------h-hcccHHHHHHHhHHHHHhcCCCcHHHH
Q 009850          109 RCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLA--------F-NGKRTKTARSQGKKFQVSVEQEATRLL  179 (524)
Q Consensus       109 ~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~--------~-~~~~~~~a~~~~~~~~~~~~p~~~~a~  179 (524)
                      .+|++.  ..+..++.++...|++++|+..++.+....+....        + ..+..+.+....+.. ....|++ ..+
T Consensus       664 ~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~-~~~~~~~-~~~  739 (899)
T TIGR02917       664 LKPDNT--EAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKA-LKRAPSS-QNA  739 (899)
T ss_pred             cCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHH-HhhCCCc-hHH
Confidence            999986  67788899999999999999999988776532221        1 123333333332221 2235665 678


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCC-------------cC
Q 009850          180 GNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGP-------------RG  245 (524)
Q Consensus       180 ~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~-------------~~  245 (524)
                      ..++.++...|++++|+..+++++...|++.. ++.+|.++..+|++++|+..|+++....|...             ++
T Consensus       740 ~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  819 (899)
T TIGR02917       740 IKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD  819 (899)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc
Confidence            88999999999999999999999999999988 89999999999999999999999987777654             44


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCcc
Q 009850          246 VDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL  301 (524)
Q Consensus       246 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~l  301 (524)
                       .+|+..+++++...|+++..+..+|.++...|++++|+..|+++++.+|.+..+.
T Consensus       820 -~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  874 (899)
T TIGR02917       820 -PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIR  874 (899)
T ss_pred             -HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHH
Confidence             6789999999999999999999999999999999999999999999999876655

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.82  E-value=2e-18  Score=202.36  Aligned_cols=224  Identities=15%  Similarity=0.075  Sum_probs=200.6

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH------------HHH
Q 009850           51 RAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQ------------ESL  118 (524)
Q Consensus        51 ~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~------------~~l  118 (524)
                      .+|.+++..|++++|+..|+++++.+|+++.++..+|.++..+|++++|+.+|+++++.+|++..            +..
T Consensus       274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~  353 (1157)
T PRK11447        274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL  353 (1157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence            55889999999999999999999999999999999999999999999999999999999997531            122


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 009850          119 DNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDA  198 (524)
Q Consensus       119 ~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~  198 (524)
                      ...+|.++...|++++|+..|++++++                          +|++..++..+|.++...|++++|+.+
T Consensus       354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~--------------------------~P~~~~a~~~Lg~~~~~~g~~~eA~~~  407 (1157)
T PRK11447        354 LIQQGDAALKANNLAQAERLYQQARQV--------------------------DNTDSYAVLGLGDVAMARKDYAAAERY  407 (1157)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHh--------------------------CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            345578889999999999999999999                          899999999999999999999999999


Q ss_pred             HHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccC----------------------CCcCHHHHHHHHHH
Q 009850          199 YRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVAD----------------------GPRGVDSHLKAYER  255 (524)
Q Consensus       199 ~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~----------------------~~~~~~~A~~~~~~  255 (524)
                      |+++++++|++.. +..++.++. .+++++|+.+++++.+..+.                      ..+++++|+..|++
T Consensus       408 y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~  486 (1157)
T PRK11447        408 YQQALRMDPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQ  486 (1157)
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            9999999999988 889999885 46789999988765332111                      23788999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCcc
Q 009850          256 AQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL  301 (524)
Q Consensus       256 al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~l  301 (524)
                      +++..|+++.+++.+|.+|...|++++|+..|+++++.+|.+....
T Consensus       487 Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~  532 (1157)
T PRK11447        487 RLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQV  532 (1157)
T ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Confidence            9999999999999999999999999999999999999999887644

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.82  E-value=3.7e-18  Score=194.52  Aligned_cols=269  Identities=12%  Similarity=0.062  Sum_probs=213.3

Q ss_pred             hhhhhhHH-HHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 009850           30 RTRSDSFH-AIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRS  108 (524)
Q Consensus        30 ~~~~~~~~-~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~  108 (524)
                      ..+...+. ++...|....++..++.++...|++++|+..|.+++..+|.+...+..++.++...|++++|+..+++++.
T Consensus       516 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  595 (899)
T TIGR02917       516 DDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAAD  595 (899)
T ss_pred             HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            33444444 33556777788888888888899999999999998888888888888888888889999999999988888


Q ss_pred             hCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHh--------hh-cccHHHHHHHhHHHHHhcCCCcHHHH
Q 009850          109 RCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLA--------FN-GKRTKTARSQGKKFQVSVEQEATRLL  179 (524)
Q Consensus       109 ~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~--------~~-~~~~~~a~~~~~~~~~~~~p~~~~a~  179 (524)
                      ..|.+.  ..+..+|.+|...|++++|+..|+++++..+....        +. .+..+.+....+.. ...+|++..++
T Consensus       596 ~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~  672 (899)
T TIGR02917       596 AAPDSP--EAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRA-LELKPDNTEAQ  672 (899)
T ss_pred             cCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH-HhcCCCCHHHH
Confidence            888776  67788888888889999999988888877543221        11 12333333322221 34478888888


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCC------------cCH
Q 009850          180 GNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGP------------RGV  246 (524)
Q Consensus       180 ~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~------------~~~  246 (524)
                      ..++.++...|++++|+..++.+....|.+.. +..+|.++...|++++|+..|+++....+...            ++.
T Consensus       673 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  752 (899)
T TIGR02917       673 IGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNT  752 (899)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCH
Confidence            89999999999999999999988888888887 88889999999999999999998876665542            677


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCcc
Q 009850          247 DSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL  301 (524)
Q Consensus       247 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~l  301 (524)
                      ++|.+.+++.+...|++..+++.+|.++...|++++|+..|+++++..|.+....
T Consensus       753 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~  807 (899)
T TIGR02917       753 AEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVL  807 (899)
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHH
Confidence            8888899999999999999999999999999999999999999998888776655

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.82  E-value=1.5e-18  Score=173.52  Aligned_cols=206  Identities=11%  Similarity=-0.066  Sum_probs=156.5

Q ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 009850           46 DTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDL  125 (524)
Q Consensus        46 ~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~  125 (524)
                      ...|+.+|.++...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|+++++++|++.  .++..+|.+
T Consensus        64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~--~a~~~lg~~  141 (296)
T PRK11189         64 AQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN--YAYLNRGIA  141 (296)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHH
Confidence            456888888888888888888888888888888888888888888888888888888888888888886  566778888


Q ss_pred             HHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 009850          126 YKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSI  205 (524)
Q Consensus       126 ~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l  205 (524)
                      +...|++++|+..|++++++                          +|+++.... ...+....+++++|+..|.+++..
T Consensus       142 l~~~g~~~eA~~~~~~al~~--------------------------~P~~~~~~~-~~~l~~~~~~~~~A~~~l~~~~~~  194 (296)
T PRK11189        142 LYYGGRYELAQDDLLAFYQD--------------------------DPNDPYRAL-WLYLAESKLDPKQAKENLKQRYEK  194 (296)
T ss_pred             HHHCCCHHHHHHHHHHHHHh--------------------------CCCCHHHHH-HHHHHHccCCHHHHHHHHHHHHhh
Confidence            88888888888888888888                          787763211 122344567888888888776654


Q ss_pred             CCCcHHHHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 009850          206 APDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFL  285 (524)
Q Consensus       206 ~P~~~~~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~  285 (524)
                      .+.. .|. .+.++..+|++.++ ..++.+              .+.++...++.|...++|+++|.++..+|++++|+.
T Consensus       195 ~~~~-~~~-~~~~~~~lg~~~~~-~~~~~~--------------~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~  257 (296)
T PRK11189        195 LDKE-QWG-WNIVEFYLGKISEE-TLMERL--------------KAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAA  257 (296)
T ss_pred             CCcc-ccH-HHHHHHHccCCCHH-HHHHHH--------------HhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence            3221 132 45666667776554 233322              122234556677888999999999999999999999


Q ss_pred             HHhhcccCCCCC
Q 009850          286 GSSSIWQPQPCK  297 (524)
Q Consensus       286 ~~~~al~~~P~~  297 (524)
                      +|++++..+|.+
T Consensus       258 ~~~~Al~~~~~~  269 (296)
T PRK11189        258 LFKLALANNVYN  269 (296)
T ss_pred             HHHHHHHhCCch
Confidence            999999999743

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.82  E-value=6.7e-18  Score=175.54  Aligned_cols=253  Identities=16%  Similarity=0.092  Sum_probs=198.7

Q ss_pred             ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH--HHHHHHHH
Q 009850           45 GDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQA--QESLDNIL  122 (524)
Q Consensus        45 ~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~--~~~l~~~l  122 (524)
                      .....+.+|..+...|++++|+..|++++..+|++..++..+|.++...|++++|+..+++++...+...  ....+..+
T Consensus        34 ~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~L  113 (389)
T PRK11788         34 RLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQEL  113 (389)
T ss_pred             hccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence            4445777899999999999999999999999999999999999999999999999999999888543221  13567788


Q ss_pred             HHHHHHcCChHHHHHHHHHHHHHhhccHh---------hhcccHHHHHHHhHHHHHhcCCCc-----HHHHHHHHHHHHH
Q 009850          123 LDLYKRCGRLDDQIALLKHKLYLIQQGLA---------FNGKRTKTARSQGKKFQVSVEQEA-----TRLLGNLGWALMQ  188 (524)
Q Consensus       123 g~~~~~~g~~~eA~~~~~~al~l~~~~~~---------~~~~~~~~a~~~~~~~~~~~~p~~-----~~a~~~Lg~~~~~  188 (524)
                      |.+|...|++++|+..|+++++..+....         ...+..+.+....... ....|.+     ...+..+|.++..
T Consensus       114 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~la~~~~~  192 (389)
T PRK11788        114 GQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERL-EKLGGDSLRVEIAHFYCELAQQALA  192 (389)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHH-HHhcCCcchHHHHHHHHHHHHHHHh
Confidence            99999999999999999999875422211         1113333333332222 1223433     3356788999999


Q ss_pred             cCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCC--------------CcCHHHHHHHH
Q 009850          189 QNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADG--------------PRGVDSHLKAY  253 (524)
Q Consensus       189 ~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~--------------~~~~~~A~~~~  253 (524)
                      .|++++|+.+|+++++.+|++.. +..+|.++...|++++|+..|+++....+..              .++.++|+..+
T Consensus       193 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l  272 (389)
T PRK11788        193 RGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFL  272 (389)
T ss_pred             CCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            99999999999999999998887 8889999999999999999999987655442              16788899999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCC
Q 009850          254 ERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  299 (524)
Q Consensus       254 ~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~  299 (524)
                      ++++...|+.... ..+|.++...|++++|+..++.+++..|.+..
T Consensus       273 ~~~~~~~p~~~~~-~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~  317 (389)
T PRK11788        273 RRALEEYPGADLL-LALAQLLEEQEGPEAAQALLREQLRRHPSLRG  317 (389)
T ss_pred             HHHHHhCCCchHH-HHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHH
Confidence            9999999987544 88899999999999999999999998887654

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.81  E-value=1.3e-19  Score=187.57  Aligned_cols=213  Identities=13%  Similarity=0.103  Sum_probs=186.9

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHc----------------------------------CCCcHHHHHHHHHHHHHc
Q 009850           48 PYVRAKNVQLVDKDPEKAIPLFWAAINA----------------------------------GDRVDSALKDMAIVMKQQ   93 (524)
Q Consensus        48 ~~~~lg~~~~~~g~~~~Ai~~~~~al~~----------------------------------~p~~~~a~~~La~~~~~~   93 (524)
                      ...++|..|++.++|++|..+|+.+-++                                  +|+.+++|..+|.||-.+
T Consensus       355 vl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQ  434 (638)
T KOG1126|consen  355 VLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQ  434 (638)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhh
Confidence            3468999999999999999999887664                                  466777888888888888


Q ss_pred             CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCC
Q 009850           94 NRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQ  173 (524)
Q Consensus        94 g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p  173 (524)
                      ++++.|+++|+++++++|...  .++..+|.-+.....+|.|..+|+.++..                          +|
T Consensus       435 kdh~~Aik~f~RAiQldp~fa--YayTLlGhE~~~~ee~d~a~~~fr~Al~~--------------------------~~  486 (638)
T KOG1126|consen  435 KDHDTAIKCFKRAIQLDPRFA--YAYTLLGHESIATEEFDKAMKSFRKALGV--------------------------DP  486 (638)
T ss_pred             hHHHHHHHHHHHhhccCCccc--hhhhhcCChhhhhHHHHhHHHHHHhhhcC--------------------------Cc
Confidence            888888888888888888776  45667777777888888888888888888                          89


Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHH
Q 009850          174 EATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKA  252 (524)
Q Consensus       174 ~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~  252 (524)
                      .+-.+|+.+|.+|.++++++.|+-+|++|++++|.+.. .+.+|..+.++|+.++|+..|+                   
T Consensus       487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~-------------------  547 (638)
T KOG1126|consen  487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYE-------------------  547 (638)
T ss_pred             hhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHH-------------------
Confidence            99999999999999999999999999999999999999 8999999999999999999999                   


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCcccccccccc
Q 009850          253 YERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTTNAIKT  309 (524)
Q Consensus       253 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~l~~~~l~~~  309 (524)
                        +|+.++|.++-..+..|.++...+++.+|+..++..-..-|....++..++.+|-
T Consensus       548 --~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k  602 (638)
T KOG1126|consen  548 --KAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYK  602 (638)
T ss_pred             --HHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHH
Confidence              8899999999999999999999999999999999999999988876644344443

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.81  E-value=7e-18  Score=175.41  Aligned_cols=215  Identities=14%  Similarity=0.096  Sum_probs=142.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhcc----------
Q 009850           80 DSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQG----------  149 (524)
Q Consensus        80 ~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~----------  149 (524)
                      ....+.+|..+...|++++|+..|+++++.+|++.  .++..+|.++...|++++|+..+++++......          
T Consensus        35 ~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~  112 (389)
T PRK11788         35 LSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETV--ELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQE  112 (389)
T ss_pred             ccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccH--HHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence            34567778999999999999999999999999886  678899999999999999999999988642111          


Q ss_pred             --Hhhh-cccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH-----H-HHHHHHHHH
Q 009850          150 --LAFN-GKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNN-----K-MCNLGICLM  220 (524)
Q Consensus       150 --~~~~-~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~-----~-~~~Lg~~~~  220 (524)
                        ..+. .+..+.+....... ...+|.+..++..++.++...|++++|+..|++++...|.+.     . ++.+|.++.
T Consensus       113 La~~~~~~g~~~~A~~~~~~~-l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~  191 (389)
T PRK11788        113 LGQDYLKAGLLDRAEELFLQL-VDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQAL  191 (389)
T ss_pred             HHHHHHHCCCHHHHHHHHHHH-HcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Confidence              1111 12222232222221 122455566666777777777777777777777666665531     1 445666666


Q ss_pred             HcCCHHHHHHHHHHhcccccCCC-------------cCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHH
Q 009850          221 KQGRIGEAKETLRRVKPAVADGP-------------RGVDSHLKAYERAQQMLKDL-ESEMMNKGGDRVEQSRLFDAFLG  286 (524)
Q Consensus       221 ~~G~~~eA~~~~~~a~~~~~~~~-------------~~~~~A~~~~~~al~~~p~~-~~a~~~lg~~~~~~g~~~eAi~~  286 (524)
                      ..|++++|+..|+++....+...             ++.++|++.++++....|.. ..++..++.+|...|++++|+..
T Consensus       192 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~  271 (389)
T PRK11788        192 ARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEF  271 (389)
T ss_pred             hCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            77777777777776655444432             55666666666666666654 23455666666666777777766


Q ss_pred             HhhcccCCCCC
Q 009850          287 SSSIWQPQPCK  297 (524)
Q Consensus       287 ~~~al~~~P~~  297 (524)
                      ++++++..|..
T Consensus       272 l~~~~~~~p~~  282 (389)
T PRK11788        272 LRRALEEYPGA  282 (389)
T ss_pred             HHHHHHhCCCc
Confidence            66666666644

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.80  E-value=2.1e-18  Score=176.08  Aligned_cols=227  Identities=15%  Similarity=0.115  Sum_probs=195.4

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHc
Q 009850           50 VRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRC  129 (524)
Q Consensus        50 ~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~  129 (524)
                      |..|..+++.|+..+|+-+|+.+++.+|.+.++|..||.+....++-..|+..++++++++|++.  .+...|+..|...
T Consensus       289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~Nl--eaLmaLAVSytNe  366 (579)
T KOG1125|consen  289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNL--EALMALAVSYTNE  366 (579)
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccH--HHHHHHHHHHhhh
Confidence            47899999999999999999999999999999999999999999999999999999999999997  7788999999999


Q ss_pred             CChHHHHHHHHHHHHHhhccHhhhc----c---------cHHHHHHHhHHHH--HhcCC--CcHHHHHHHHHHHHHcCCH
Q 009850          130 GRLDDQIALLKHKLYLIQQGLAFNG----K---------RTKTARSQGKKFQ--VSVEQ--EATRLLGNLGWALMQQNNY  192 (524)
Q Consensus       130 g~~~eA~~~~~~al~l~~~~~~~~~----~---------~~~~a~~~~~~~~--~~~~p--~~~~a~~~Lg~~~~~~g~~  192 (524)
                      |.-.+|+.++.+.+...+.-..+..    .         .........+.+.  ....|  .+++++..||.+|...|+|
T Consensus       367 g~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ef  446 (579)
T KOG1125|consen  367 GLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEF  446 (579)
T ss_pred             hhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHH
Confidence            9999999999999876521111000    0         0011111111111  22245  6789999999999999999


Q ss_pred             HHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 009850          193 IEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKG  271 (524)
Q Consensus       193 ~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg  271 (524)
                      +.|+++|+.||..+|++.. |..||..+..-.+.++|+..|+                     +|+++.|.+..+++|||
T Consensus       447 draiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~---------------------rALqLqP~yVR~RyNlg  505 (579)
T KOG1125|consen  447 DRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYN---------------------RALQLQPGYVRVRYNLG  505 (579)
T ss_pred             HHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHH---------------------HHHhcCCCeeeeehhhh
Confidence            9999999999999999999 9999999999999999999999                     89999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHhhcccCCCCCCC
Q 009850          272 GDRVEQSRLFDAFLGSSSIWQPQPCKDH  299 (524)
Q Consensus       272 ~~~~~~g~~~eAi~~~~~al~~~P~~~~  299 (524)
                      .+++.+|.|.+|+.+|-.++.+.+....
T Consensus       506 IS~mNlG~ykEA~~hlL~AL~mq~ks~~  533 (579)
T KOG1125|consen  506 ISCMNLGAYKEAVKHLLEALSMQRKSRN  533 (579)
T ss_pred             hhhhhhhhHHHHHHHHHHHHHhhhcccc
Confidence            9999999999999999999998877443

>PRK12370 invasion protein regulator; Provisional

Probab=99.80  E-value=6.9e-18  Score=183.15  Aligned_cols=204  Identities=12%  Similarity=-0.029  Sum_probs=178.3

Q ss_pred             HHHHHHHHHHc---CChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCcHHH
Q 009850           49 YVRAKNVQLVD---KDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQ---------NRAEEAIEAIKSLRSRCSDQAQE  116 (524)
Q Consensus        49 ~~~lg~~~~~~---g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~---------g~~~eAi~~~~~al~~~p~~~~~  116 (524)
                      ++..|...+..   +++++|+.+|+++++++|+++.++..+|.++...         +++++|+..++++++++|+++  
T Consensus       261 ~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~--  338 (553)
T PRK12370        261 VYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNP--  338 (553)
T ss_pred             HHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCH--
Confidence            34556544443   4578999999999999999999999999988744         348999999999999999998  


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 009850          117 SLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAE  196 (524)
Q Consensus       117 ~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi  196 (524)
                      .++..+|.++...|++++|+..|++++++                          +|+++.+++.+|.++...|++++|+
T Consensus       339 ~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--------------------------~P~~~~a~~~lg~~l~~~G~~~eAi  392 (553)
T PRK12370        339 QALGLLGLINTIHSEYIVGSLLFKQANLL--------------------------SPISADIKYYYGWNLFMAGQLEEAL  392 (553)
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHh--------------------------CCCCHHHHHHHHHHHHHCCCHHHHH
Confidence            67788999999999999999999999999                          9999999999999999999999999


Q ss_pred             HHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHH
Q 009850          197 DAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQM-LKDLESEMMNKGGDR  274 (524)
Q Consensus       197 ~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~-~p~~~~a~~~lg~~~  274 (524)
                      ..|+++++++|.++. ++.++.++...|++++|+..++                     +++.. .|+.+.++..+|.++
T Consensus       393 ~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~---------------------~~l~~~~p~~~~~~~~la~~l  451 (553)
T PRK12370        393 QTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGD---------------------ELRSQHLQDNPILLSMQVMFL  451 (553)
T ss_pred             HHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHH---------------------HHHHhccccCHHHHHHHHHHH
Confidence            999999999999987 5667777888999999999998                     55655 478888999999999


Q ss_pred             HHcCCHHHHHHHHhhcccCCCCCCCcc
Q 009850          275 VEQSRLFDAFLGSSSIWQPQPCKDHIL  301 (524)
Q Consensus       275 ~~~g~~~eAi~~~~~al~~~P~~~~~l  301 (524)
                      ..+|++++|+..+.++....|......
T Consensus       452 ~~~G~~~eA~~~~~~~~~~~~~~~~~~  478 (553)
T PRK12370        452 SLKGKHELARKLTKEISTQEITGLIAV  478 (553)
T ss_pred             HhCCCHHHHHHHHHHhhhccchhHHHH
Confidence            999999999999999877777655433

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.79  E-value=2.5e-17  Score=151.03  Aligned_cols=207  Identities=16%  Similarity=0.078  Sum_probs=175.9

Q ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 009850           46 DTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDL  125 (524)
Q Consensus        46 ~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~  125 (524)
                      ..+...||.-|+..|++..|...++++|+.+|++..+|..+|.+|...|+.+.|.+.|++++.++|+++  .+.++.|..
T Consensus        35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~G--dVLNNYG~F  112 (250)
T COG3063          35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNG--DVLNNYGAF  112 (250)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCcc--chhhhhhHH
Confidence            346889999999999999999999999999999999999999999999999999999999999999998  888999999


Q ss_pred             HHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 009850          126 YKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSI  205 (524)
Q Consensus       126 ~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l  205 (524)
                      ++.+|++++|...|++++..-                        .-+..+.++-|+|.|.++.|+++.|..+|++++++
T Consensus       113 LC~qg~~~eA~q~F~~Al~~P------------------------~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~  168 (250)
T COG3063         113 LCAQGRPEEAMQQFERALADP------------------------AYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL  168 (250)
T ss_pred             HHhCCChHHHHHHHHHHHhCC------------------------CCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh
Confidence            999999999999999998751                        02445789999999999999999999999999999


Q ss_pred             CCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 009850          206 APDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAF  284 (524)
Q Consensus       206 ~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi  284 (524)
                      +|+.+. ...++..+++.|++..|..++++.                     ....+-.++.+.....+-...|+-+.+-
T Consensus       169 dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~---------------------~~~~~~~A~sL~L~iriak~~gd~~~a~  227 (250)
T COG3063         169 DPQFPPALLELARLHYKAGDYAPARLYLERY---------------------QQRGGAQAESLLLGIRIAKRLGDRAAAQ  227 (250)
T ss_pred             CcCCChHHHHHHHHHHhcccchHHHHHHHHH---------------------HhcccccHHHHHHHHHHHHHhccHHHHH
Confidence            999998 999999999999999999999953                     3333334444444445666677777666


Q ss_pred             HHHhhcccCCCCCCC
Q 009850          285 LGSSSIWQPQPCKDH  299 (524)
Q Consensus       285 ~~~~~al~~~P~~~~  299 (524)
                      ..-.+.-+.-|....
T Consensus       228 ~Y~~qL~r~fP~s~e  242 (250)
T COG3063         228 RYQAQLQRLFPYSEE  242 (250)
T ss_pred             HHHHHHHHhCCCcHH
Confidence            665555555565544

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.79  E-value=6.1e-18  Score=168.94  Aligned_cols=228  Identities=12%  Similarity=0.077  Sum_probs=212.2

Q ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 009850           46 DTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDL  125 (524)
Q Consensus        46 ~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~  125 (524)
                      ..++...|..++..|++-.|...|+++|.++|.+...|..+|.+|...++.++-...|.++..++|.++  .+++..|++
T Consensus       326 A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~--dvYyHRgQm  403 (606)
T KOG0547|consen  326 AEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENP--DVYYHRGQM  403 (606)
T ss_pred             HHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCC--chhHhHHHH
Confidence            567788899999999999999999999999999999999999999999999999999999999999998  788999999


Q ss_pred             HHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 009850          126 YKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSI  205 (524)
Q Consensus       126 ~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l  205 (524)
                      ++-++++++|+.-|++++.+                          +|++.-++..++.+++++++++++...|+.+...
T Consensus       404 ~flL~q~e~A~aDF~Kai~L--------------------------~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk  457 (606)
T KOG0547|consen  404 RFLLQQYEEAIADFQKAISL--------------------------DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK  457 (606)
T ss_pred             HHHHHHHHHHHHHHHHHhhc--------------------------ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999                          9999999999999999999999999999999999


Q ss_pred             CCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCC--------------------cCHHHHHHHHHHHHHhCCCCH
Q 009850          206 APDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGP--------------------RGVDSHLKAYERAQQMLKDLE  264 (524)
Q Consensus       206 ~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~--------------------~~~~~A~~~~~~al~~~p~~~  264 (524)
                      .|..+. +...|.++..+++|+.|++.|..+....+...                    +++..|++.+.++++++|...
T Consensus       458 FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce  537 (606)
T KOG0547|consen  458 FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCE  537 (606)
T ss_pred             CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHH
Confidence            999999 88899999999999999999999976666521                    677889999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCcc
Q 009850          265 SEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL  301 (524)
Q Consensus       265 ~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~l  301 (524)
                      .++..||.+..++|+.++|++.|+++..+.-...+++
T Consensus       538 ~A~~tlaq~~lQ~~~i~eAielFEksa~lArt~~E~~  574 (606)
T KOG0547|consen  538 QAYETLAQFELQRGKIDEAIELFEKSAQLARTESEMV  574 (606)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHH
Confidence            9999999999999999999999999887755544433

>PRK12370 invasion protein regulator; Provisional

Probab=99.78  E-value=3.6e-17  Score=177.59  Aligned_cols=204  Identities=12%  Similarity=-0.001  Sum_probs=177.8

Q ss_pred             HHHhcCCCChHHHHHHHHHHHHc---------CChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009850           37 HAIHKVPVGDTPYVRAKNVQLVD---------KDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLR  107 (524)
Q Consensus        37 ~~~~~~p~~~~~~~~lg~~~~~~---------g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al  107 (524)
                      +++...|....+|..+|.++...         +++++|+..++++++++|+++.++..+|.++...|++++|+..|++++
T Consensus       286 ~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al  365 (553)
T PRK12370        286 QCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQAN  365 (553)
T ss_pred             HHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            35566788889999999887643         448999999999999999999999999999999999999999999999


Q ss_pred             HhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHH
Q 009850          108 SRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALM  187 (524)
Q Consensus       108 ~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~  187 (524)
                      +++|+++  .+++.+|.++...|++++|+..+++++++                          +|.++.+++.++.+++
T Consensus       366 ~l~P~~~--~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--------------------------~P~~~~~~~~~~~~~~  417 (553)
T PRK12370        366 LLSPISA--DIKYYYGWNLFMAGQLEEALQTINECLKL--------------------------DPTRAAAGITKLWITY  417 (553)
T ss_pred             HhCCCCH--HHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------------------------CCCChhhHHHHHHHHH
Confidence            9999998  67788999999999999999999999999                          8999888778888888


Q ss_pred             HcCCHHHHHHHHHHHHhhC-CCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHH
Q 009850          188 QQNNYIEAEDAYRRALSIA-PDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLES  265 (524)
Q Consensus       188 ~~g~~~eAi~~~~~Al~l~-P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~  265 (524)
                      ..|++++|+..+++++... |+++. +.++|.++..+|++++|...+.                     +.....|+...
T Consensus       418 ~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~---------------------~~~~~~~~~~~  476 (553)
T PRK12370        418 YHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTK---------------------EISTQEITGLI  476 (553)
T ss_pred             hccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHH---------------------HhhhccchhHH
Confidence            8999999999999999885 77777 8999999999999999999998                     45555666667


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHhhcc
Q 009850          266 EMMNKGGDRVEQSRLFDAFLGSSSIW  291 (524)
Q Consensus       266 a~~~lg~~~~~~g~~~eAi~~~~~al  291 (524)
                      ++..++..|...|+  +|...++.++
T Consensus       477 ~~~~l~~~~~~~g~--~a~~~l~~ll  500 (553)
T PRK12370        477 AVNLLYAEYCQNSE--RALPTIREFL  500 (553)
T ss_pred             HHHHHHHHHhccHH--HHHHHHHHHH
Confidence            77888888888874  5655555544

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.77  E-value=1.1e-17  Score=153.31  Aligned_cols=200  Identities=19%  Similarity=0.192  Sum_probs=175.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHH
Q 009850           80 DSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKT  159 (524)
Q Consensus        80 ~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~  159 (524)
                      ..+...||.-|+..|++..|...++++++++|++.  ..|..++.+|...|+.+.|.+.|++++.+              
T Consensus        35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~--~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--------------   98 (250)
T COG3063          35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYY--LAHLVRAHYYQKLGENDLADESYRKALSL--------------   98 (250)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH--HHHHHHHHHHHHcCChhhHHHHHHHHHhc--------------
Confidence            35688999999999999999999999999999997  78889999999999999999999999999              


Q ss_pred             HHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH----HHHHHHHHHHcCCHHHHHHHHHHh
Q 009850          160 ARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK----MCNLGICLMKQGRIGEAKETLRRV  235 (524)
Q Consensus       160 a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~----~~~Lg~~~~~~G~~~eA~~~~~~a  235 (524)
                                  +|++.++++|.|+.++.+|+|++|...|++|+. +|....    |-|+|.|..+.|+++.|..+|+  
T Consensus        99 ------------~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~-~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~--  163 (250)
T COG3063          99 ------------APNNGDVLNNYGAFLCAQGRPEEAMQQFERALA-DPAYGEPSDTLENLGLCALKAGQFDQAEEYLK--  163 (250)
T ss_pred             ------------CCCccchhhhhhHHHHhCCChHHHHHHHHHHHh-CCCCCCcchhhhhhHHHHhhcCCchhHHHHHH--
Confidence                        999999999999999999999999999999998 777644    9999999999999999999999  


Q ss_pred             cccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCcccccccccccccccc
Q 009850          236 KPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTTNAIKTRDDFAD  315 (524)
Q Consensus       236 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~l~~~~l~~~~q~lgd  315 (524)
                                         ++++.+|+.+.....++..++..|++..|...++......+.....+-  -.+.....+||
T Consensus       164 -------------------raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~--L~iriak~~gd  222 (250)
T COG3063         164 -------------------RALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLL--LGIRIAKRLGD  222 (250)
T ss_pred             -------------------HHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHH--HHHHHHHHhcc
Confidence                               889999999999999999999999999999999988877775555441  13445567788


Q ss_pred             cccccccccchhhhhhhc
Q 009850          316 ENIDSNVDVNPIVLSKHR  333 (524)
Q Consensus       316 ~~~~~~~~~l~~l~~~~~  333 (524)
                      ....  .+|-..|...+|
T Consensus       223 ~~~a--~~Y~~qL~r~fP  238 (250)
T COG3063         223 RAAA--QRYQAQLQRLFP  238 (250)
T ss_pred             HHHH--HHHHHHHHHhCC
Confidence            7766  666666644443

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.76  E-value=5.6e-16  Score=174.38  Aligned_cols=307  Identities=9%  Similarity=-0.023  Sum_probs=200.7

Q ss_pred             hcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 009850           40 HKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLD  119 (524)
Q Consensus        40 ~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~  119 (524)
                      ...|..+.++..+|.++...|++++|+..+++++...|++.. +..+|.++...|++++|+..++++++..|++.  .++
T Consensus        77 ~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~--~~~  153 (765)
T PRK10049         77 SLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQ--QYP  153 (765)
T ss_pred             HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH--HHH
Confidence            344667777777777777777777777777777777777777 77777777777777777777777777777775  444


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHH----------------------------------------------HHhh---c--
Q 009850          120 NILLDLYKRCGRLDDQIALLKHKL----------------------------------------------YLIQ---Q--  148 (524)
Q Consensus       120 ~~lg~~~~~~g~~~eA~~~~~~al----------------------------------------------~l~~---~--  148 (524)
                      ..++.++...|..++|+..++++.                                              +..+   .  
T Consensus       154 ~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~  233 (765)
T PRK10049        154 TEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDAT  233 (765)
T ss_pred             HHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccc
Confidence            556666666666665554444211                                              1100   0  


Q ss_pred             -----------cHhhhcccHHHHHHHhHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc----HH-
Q 009850          149 -----------GLAFNGKRTKTARSQGKKFQVSVEQE-ATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDN----NK-  211 (524)
Q Consensus       149 -----------~~~~~~~~~~~a~~~~~~~~~~~~p~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~----~~-  211 (524)
                                 +..+..+....+....+.+ ....|. ...+...+|.+|...|++++|+.+|++++..+|.+    .. 
T Consensus       234 ~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~l-l~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~  312 (765)
T PRK10049        234 ADYQRARIDRLGALLARDRYKDVISEYQRL-KAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEE  312 (765)
T ss_pred             hHHHHHHHHHHHHHHHhhhHHHHHHHHHHh-hccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHH
Confidence                       0000011112222111111 111221 22234446889999999999999999999888766    23 


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHhcccccC-------------C---------------CcCHHHHHHHHHHHHHhCCCC
Q 009850          212 MCNLGICLMKQGRIGEAKETLRRVKPAVAD-------------G---------------PRGVDSHLKAYERAQQMLKDL  263 (524)
Q Consensus       212 ~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~-------------~---------------~~~~~~A~~~~~~al~~~p~~  263 (524)
                      +..++.++.+.|++++|+..++++....|.             .               .++.++|+..+++++...|++
T Consensus       313 ~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n  392 (765)
T PRK10049        313 LADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGN  392 (765)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            677888889999999999999988655431             1               167788999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCcccccccccccccccccccccccccchhhhhhhccccccccchh
Q 009850          264 ESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTTNAIKTRDDFADENIDSNVDVNPIVLSKHRSVKKLFPTAN  343 (524)
Q Consensus       264 ~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~l~~~~l~~~~q~lgd~~~~~~~~~l~~l~~~~~~~~~~~p~~~  343 (524)
                      ..++..+|.++...|++++|+..+++++..+|.+......  ......+.|+....  ...+.       .+...+|-.-
T Consensus       393 ~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~--~a~~al~~~~~~~A--~~~~~-------~ll~~~Pd~~  461 (765)
T PRK10049        393 QGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVE--QAWTALDLQEWRQM--DVLTD-------DVVAREPQDP  461 (765)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHH--HHHHHHHhCCHHHH--HHHHH-------HHHHhCCCCH
Confidence            9999999999999999999999999999999998875422  33344455554333  22222       2233344444


Q ss_pred             HHHhhhhhhhhhcccchh
Q 009850          344 AIKTQENFADENINANIV  361 (524)
Q Consensus       344 ~i~~~~~~~~~~~~~~l~  361 (524)
                      .+.+.....+.+..+.+.
T Consensus       462 ~~~~~~~~~~~~~~~~l~  479 (765)
T PRK10049        462 GVQRLARARDVHHMAELR  479 (765)
T ss_pred             HHHHHHHHHHhccCceEE
Confidence            455555555555544443

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.75  E-value=3.2e-16  Score=150.58  Aligned_cols=256  Identities=11%  Similarity=0.033  Sum_probs=189.8

Q ss_pred             CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 009850           44 VGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILL  123 (524)
Q Consensus        44 ~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg  123 (524)
                      ...+-++.+|..++..|++..|+..|..|++.+|++..+++..|.+|..+|+-.-|+..+.+++++.|+..  .+....|
T Consensus        36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~--~ARiQRg  113 (504)
T KOG0624|consen   36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFM--AARIQRG  113 (504)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHH--HHHHHhc
Confidence            45567899999999999999999999999999999999999999999999999999999999999999986  5667779


Q ss_pred             HHHHHcCChHHHHHHHHHHHHHhhccHhhhc------------------------ccHHHHHHHhHHH------------
Q 009850          124 DLYKRCGRLDDQIALLKHKLYLIQQGLAFNG------------------------KRTKTARSQGKKF------------  167 (524)
Q Consensus       124 ~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~------------------------~~~~~a~~~~~~~------------  167 (524)
                      .++.++|.+++|+.-|+.++...+.......                        +....+..+...+            
T Consensus       114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~  193 (504)
T KOG0624|consen  114 VVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQ  193 (504)
T ss_pred             hhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHH
Confidence            9999999999999999999876532111000                        0001111111000            


Q ss_pred             ---------------------HHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH----H---------H
Q 009850          168 ---------------------QVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK----M---------C  213 (524)
Q Consensus       168 ---------------------~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~----~---------~  213 (524)
                                           ...+..++.+.++.++.+++..|+.+.++...+++|+++|++..    |         .
T Consensus       194 ~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~l  273 (504)
T KOG0624|consen  194 ARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSL  273 (504)
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHH
Confidence                                 02224455556666666666666666666666666666666522    1         1


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHhcccccCCC-----------------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 009850          214 NLGICLMKQGRIGEAKETLRRVKPAVADGP-----------------RGVDSHLKAYERAQQMLKDLESEMMNKGGDRVE  276 (524)
Q Consensus       214 ~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~-----------------~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~  276 (524)
                      .-+....+.++|.++++..++++...|...                 +.+.+|+....+++.++|+++.++..++..|+.
T Consensus       274 es~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~  353 (504)
T KOG0624|consen  274 ESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLG  353 (504)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh
Confidence            112233455666666666666655555522                 567889999999999999999999999999999


Q ss_pred             cCCHHHHHHHHhhcccCCCCCCCcc
Q 009850          277 QSRLFDAFLGSSSIWQPQPCKDHIL  301 (524)
Q Consensus       277 ~g~~~eAi~~~~~al~~~P~~~~~l  301 (524)
                      ...|++||..|+++...++.+...-
T Consensus       354 dE~YD~AI~dye~A~e~n~sn~~~r  378 (504)
T KOG0624|consen  354 DEMYDDAIHDYEKALELNESNTRAR  378 (504)
T ss_pred             hHHHHHHHHHHHHHHhcCcccHHHH
Confidence            9999999999999999999987744

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.75  E-value=2.7e-16  Score=156.52  Aligned_cols=203  Identities=16%  Similarity=0.083  Sum_probs=174.9

Q ss_pred             CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHH---HH-------------------------------HHH
Q 009850           42 VPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSA---LK-------------------------------DMA   87 (524)
Q Consensus        42 ~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a---~~-------------------------------~La   87 (524)
                      +|...-.-...|.+.+...|+++|+..|+.+.+.+|-..+-   +.                               -+|
T Consensus       258 f~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIa  337 (559)
T KOG1155|consen  258 FPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIA  337 (559)
T ss_pred             CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeeh
Confidence            34444444567888999999999999999999988853221   11                               135


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHH
Q 009850           88 IVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKF  167 (524)
Q Consensus        88 ~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~  167 (524)
                      +-|...+++++|+.+|+++++++|...  .+|..+|.-|..+.+...|++.|++|+.+                      
T Consensus       338 NYYSlr~eHEKAv~YFkRALkLNp~~~--~aWTLmGHEyvEmKNt~AAi~sYRrAvdi----------------------  393 (559)
T KOG1155|consen  338 NYYSLRSEHEKAVMYFKRALKLNPKYL--SAWTLMGHEYVEMKNTHAAIESYRRAVDI----------------------  393 (559)
T ss_pred             hHHHHHHhHHHHHHHHHHHHhcCcchh--HHHHHhhHHHHHhcccHHHHHHHHHHHhc----------------------
Confidence            566667788999999999999999887  78889999999999999999999999998                      


Q ss_pred             HHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCH
Q 009850          168 QVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGV  246 (524)
Q Consensus       168 ~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~  246 (524)
                          +|.+-.+|+.||++|..++...=|+-+|++|+.+.|+++. |..||.||.++++.++|+.+|.             
T Consensus       394 ----~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCyk-------------  456 (559)
T KOG1155|consen  394 ----NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYK-------------  456 (559)
T ss_pred             ----CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHH-------------
Confidence                8999999999999999999999999999999999999999 9999999999999999999999             


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccC
Q 009850          247 DSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQP  293 (524)
Q Consensus       247 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~  293 (524)
                              +++........+++.+|.+|.+++++.+|..+|++-++.
T Consensus       457 --------rai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~  495 (559)
T KOG1155|consen  457 --------RAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEV  495 (559)
T ss_pred             --------HHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence                    666666667789999999999999999999999988764

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.74  E-value=1.3e-16  Score=162.25  Aligned_cols=212  Identities=17%  Similarity=0.094  Sum_probs=192.1

Q ss_pred             HhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 009850           39 IHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESL  118 (524)
Q Consensus        39 ~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l  118 (524)
                      +...|..+-+|+..|..|+..|++.+|..+|.++..++|....+|...|..|...|..++|+.+|..|-++.|...... 
T Consensus       305 V~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~-  383 (611)
T KOG1173|consen  305 VDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPS-  383 (611)
T ss_pred             HHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchH-
Confidence            3456888889999999999999999999999999999999999999999999999999999999999999999764223 


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 009850          119 DNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDA  198 (524)
Q Consensus       119 ~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~  198 (524)
                       ..+|.-|.+.+++.-|..+|.+|+.+                          .|.++-++..+|.+.+..+.|.+|..+
T Consensus       384 -LYlgmey~~t~n~kLAe~Ff~~A~ai--------------------------~P~Dplv~~Elgvvay~~~~y~~A~~~  436 (611)
T KOG1173|consen  384 -LYLGMEYMRTNNLKLAEKFFKQALAI--------------------------APSDPLVLHELGVVAYTYEEYPEALKY  436 (611)
T ss_pred             -HHHHHHHHHhccHHHHHHHHHHHHhc--------------------------CCCcchhhhhhhheeehHhhhHHHHHH
Confidence             34577788999999999999999988                          899999999999999999999999999


Q ss_pred             HHHHHhhC----CCc----HHHHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 009850          199 YRRALSIA----PDN----NKMCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNK  270 (524)
Q Consensus       199 ~~~Al~l~----P~~----~~~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l  270 (524)
                      |+.++..-    ++.    +.+.|||.++.+++++++|+.+|+                     +++.+.|.++..|..+
T Consensus       437 f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q---------------------~aL~l~~k~~~~~asi  495 (611)
T KOG1173|consen  437 FQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQ---------------------KALLLSPKDASTHASI  495 (611)
T ss_pred             HHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHH---------------------HHHHcCCCchhHHHHH
Confidence            99999432    222    228899999999999999999999                     8899999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHhhcccCCCCCCC
Q 009850          271 GGDRVEQSRLFDAFLGSSSIWQPQPCKDH  299 (524)
Q Consensus       271 g~~~~~~g~~~eAi~~~~~al~~~P~~~~  299 (524)
                      |.+|..+|+++.|+..|.+++-+.|.+..
T Consensus       496 g~iy~llgnld~Aid~fhKaL~l~p~n~~  524 (611)
T KOG1173|consen  496 GYIYHLLGNLDKAIDHFHKALALKPDNIF  524 (611)
T ss_pred             HHHHHHhcChHHHHHHHHHHHhcCCccHH
Confidence            99999999999999999999999998754

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.74  E-value=2e-16  Score=158.16  Aligned_cols=252  Identities=13%  Similarity=0.068  Sum_probs=204.4

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 009850           48 PYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYK  127 (524)
Q Consensus        48 ~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~  127 (524)
                      .+-..|+-+++.|.|++||.+|.+||.+.|+.+..|.+++.||...|+|++-++...++++++|+..  .+++..+..+.
T Consensus       117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~--KAl~RRA~A~E  194 (606)
T KOG0547|consen  117 ALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYV--KALLRRASAHE  194 (606)
T ss_pred             HHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHH--HHHHHHHHHHH
Confidence            4667899999999999999999999999999999999999999999999999999999999999997  67788899999


Q ss_pred             HcCChHHHHHHHHHH------------------HHHh------------------------------------------h
Q 009850          128 RCGRLDDQIALLKHK------------------LYLI------------------------------------------Q  147 (524)
Q Consensus       128 ~~g~~~eA~~~~~~a------------------l~l~------------------------------------------~  147 (524)
                      .+|++++|+.-..-.                  |...                                          +
T Consensus       195 ~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~  274 (606)
T KOG0547|consen  195 QLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSD  274 (606)
T ss_pred             hhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCc
Confidence            999999987543321                  1110                                          0


Q ss_pred             ccHh--------hhcc---cHHHH----------------------------HHHhH------------------HHHHh
Q 009850          148 QGLA--------FNGK---RTKTA----------------------------RSQGK------------------KFQVS  170 (524)
Q Consensus       148 ~~~~--------~~~~---~~~~a----------------------------~~~~~------------------~~~~~  170 (524)
                      .+-.        +...   .+..+                            ..+.-                  ...+.
T Consensus       275 ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~  354 (606)
T KOG0547|consen  275 KSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIK  354 (606)
T ss_pred             cchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHh
Confidence            0000        0000   00000                            00000                  00144


Q ss_pred             cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCC------
Q 009850          171 VEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGP------  243 (524)
Q Consensus       171 ~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~------  243 (524)
                      ++|.+...|..+|.+|....+-++-...|.+|..++|++++ |+.+|.+++-++++++|+..|+++....|...      
T Consensus       355 l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl  434 (606)
T KOG0547|consen  355 LDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQL  434 (606)
T ss_pred             cCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHH
Confidence            57777777999999999999999999999999999999999 99999999999999999999999988877764      


Q ss_pred             -------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCcc
Q 009850          244 -------RGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL  301 (524)
Q Consensus       244 -------~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~l  301 (524)
                             +.++++.+.|+.+....|..++++...|.++..+++++.|+..|..++.+.|....++
T Consensus       435 ~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~  499 (606)
T KOG0547|consen  435 CCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLII  499 (606)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccccccc
Confidence                   5677889999999999999999999999999999999999999999999999855543

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.74  E-value=1.7e-16  Score=151.49  Aligned_cols=225  Identities=13%  Similarity=0.094  Sum_probs=200.6

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHc
Q 009850           50 VRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRC  129 (524)
Q Consensus        50 ~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~  129 (524)
                      ..+|.+|++.|-+.+|...++.++...|. ++.+..|+.+|.+..+...|+..|.+.+...|.+.  .+..-.+.++..+
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~-~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~V--T~l~g~ARi~eam  303 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPH-PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDV--TYLLGQARIHEAM  303 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhhcCCc-hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchh--hhhhhhHHHHHHH
Confidence            47999999999999999999999998875 78899999999999999999999999999999886  5666778999999


Q ss_pred             CChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 009850          130 GRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDN  209 (524)
Q Consensus       130 g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~  209 (524)
                      +++++|.++|+.+++.                          +|.+.++.-.+|.-|+..++.+-|+.+|++.+++.-.+
T Consensus       304 ~~~~~a~~lYk~vlk~--------------------------~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~s  357 (478)
T KOG1129|consen  304 EQQEDALQLYKLVLKL--------------------------HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQS  357 (478)
T ss_pred             HhHHHHHHHHHHHHhc--------------------------CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCC
Confidence            9999999999999998                          78888888888888888899999999999999988888


Q ss_pred             HH-HHHHHHHHHHcCCHHHHHHHHHHhcccccC------CC----------cCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 009850          210 NK-MCNLGICLMKQGRIGEAKETLRRVKPAVAD------GP----------RGVDSHLKAYERAQQMLKDLESEMMNKGG  272 (524)
Q Consensus       210 ~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~------~~----------~~~~~A~~~~~~al~~~p~~~~a~~~lg~  272 (524)
                      +. ++|+|.|++..++++-++..|++++.....      .|          |++..|.++|+-++..++++.+++.|||.
T Consensus       358 peLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLav  437 (478)
T KOG1129|consen  358 PELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAV  437 (478)
T ss_pred             hHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHH
Confidence            88 888999999999999999999888543321      12          77788888999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHhhcccCCCCCCCcccc
Q 009850          273 DRVEQSRLFDAFLGSSSIWQPQPCKDHILPT  303 (524)
Q Consensus       273 ~~~~~g~~~eAi~~~~~al~~~P~~~~~l~~  303 (524)
                      +-.+.|+.++|...+..+-...|...+...+
T Consensus       438 L~~r~G~i~~Arsll~~A~s~~P~m~E~~~N  468 (478)
T KOG1129|consen  438 LAARSGDILGARSLLNAAKSVMPDMAEVTTN  468 (478)
T ss_pred             HHhhcCchHHHHHHHHHhhhhCccccccccc
Confidence            9999999999999999999999987775533

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.74  E-value=1.5e-16  Score=158.25  Aligned_cols=210  Identities=15%  Similarity=0.065  Sum_probs=186.4

Q ss_pred             ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 009850           45 GDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLD  124 (524)
Q Consensus        45 ~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~  124 (524)
                      -++++-..|+.|...++.++|+.+|++|++++|....+|..+|+-|..+.+...|++.|++|++++|.+-  .+|+-+|+
T Consensus       329 R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~Dy--RAWYGLGQ  406 (559)
T KOG1155|consen  329 RPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDY--RAWYGLGQ  406 (559)
T ss_pred             CccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhH--HHHhhhhH
Confidence            4445777889999999999999999999999999999999999999999999999999999999999885  89999999


Q ss_pred             HHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009850          125 LYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALS  204 (524)
Q Consensus       125 ~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~  204 (524)
                      .|.-++...=|+-+|++|+++                          .|+++..|..||.||.+.++.++|+.+|.+|+.
T Consensus       407 aYeim~Mh~YaLyYfqkA~~~--------------------------kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~  460 (559)
T KOG1155|consen  407 AYEIMKMHFYALYYFQKALEL--------------------------KPNDSRLWVALGECYEKLNRLEEAIKCYKRAIL  460 (559)
T ss_pred             HHHHhcchHHHHHHHHHHHhc--------------------------CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence            999999999999999999999                          899999999999999999999999999999999


Q ss_pred             hCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 009850          205 IAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDA  283 (524)
Q Consensus       205 l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA  283 (524)
                      ....+.. +..||..|.++++..+|..+|++...              .....-...|....+..-|+.-+...+++++|
T Consensus       461 ~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~--------------~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~A  526 (559)
T KOG1155|consen  461 LGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVE--------------VSELEGEIDDETIKARLFLAEYFKKMKDFDEA  526 (559)
T ss_pred             ccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH--------------HHHhhcccchHHHHHHHHHHHHHHhhcchHHH
Confidence            9888777 99999999999999999999996432              11122224455566777799999999999999


Q ss_pred             HHHHhhcccCCCC
Q 009850          284 FLGSSSIWQPQPC  296 (524)
Q Consensus       284 i~~~~~al~~~P~  296 (524)
                      -.....++..++.
T Consensus       527 s~Ya~~~~~~~~e  539 (559)
T KOG1155|consen  527 SYYATLVLKGETE  539 (559)
T ss_pred             HHHHHHHhcCCch
Confidence            9988877776544

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.74  E-value=1e-16  Score=153.21  Aligned_cols=320  Identities=14%  Similarity=0.125  Sum_probs=253.5

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHH
Q 009850           50 VRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQ---AQESLDNILLDLY  126 (524)
Q Consensus        50 ~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~---~~~~l~~~lg~~~  126 (524)
                      |-.|.-++...+.++|+..|..+++.+|...++...||.+|.+.|..+.||...+..+.. |+.   -...+...||.-|
T Consensus        39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dy  117 (389)
T COG2956          39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDY  117 (389)
T ss_pred             HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHH
Confidence            456888899999999999999999999999999999999999999999999999887665 443   2245667899999


Q ss_pred             HHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 009850          127 KRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEA-TRLLGNLGWALMQQNNYIEAEDAYRRALSI  205 (524)
Q Consensus       127 ~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~-~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l  205 (524)
                      +..|-+|.|+..|...+..                           |+. ..++..|-.+|....+|++|++.-++..++
T Consensus       118 m~aGl~DRAE~~f~~L~de---------------------------~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~  170 (389)
T COG2956         118 MAAGLLDRAEDIFNQLVDE---------------------------GEFAEGALQQLLNIYQATREWEKAIDVAERLVKL  170 (389)
T ss_pred             HHhhhhhHHHHHHHHHhcc---------------------------hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHc
Confidence            9999999999999987754                           333 568899999999999999999999999999


Q ss_pred             CCCcH-----H-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 009850          206 APDNN-----K-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSR  279 (524)
Q Consensus       206 ~P~~~-----~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~  279 (524)
                      .++..     . ||.|+..+....+.+.|+..+.                     ++++.+|....+-..+|.++...|+
T Consensus       171 ~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~---------------------kAlqa~~~cvRAsi~lG~v~~~~g~  229 (389)
T COG2956         171 GGQTYRVEIAQFYCELAQQALASSDVDRARELLK---------------------KALQADKKCVRASIILGRVELAKGD  229 (389)
T ss_pred             CCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH---------------------HHHhhCccceehhhhhhHHHHhccc
Confidence            88762     2 7888888888888888888887                     8899999999999999999999999


Q ss_pred             HHHHHHHHhhcccCCCCCCC-cccccccccccccccccccccccccchhhhhhhccccccccchhHHHhh--hhhhhhhc
Q 009850          280 LFDAFLGSSSIWQPQPCKDH-ILPTTNAIKTRDDFADENIDSNVDVNPIVLSKHRSVKKLFPTANAIKTQ--ENFADENI  356 (524)
Q Consensus       280 ~~eAi~~~~~al~~~P~~~~-~l~~~~l~~~~q~lgd~~~~~~~~~l~~l~~~~~~~~~~~p~~~~i~~~--~~~~~~~~  356 (524)
                      +..|++.++.+++.+|.... ++.  .+..|...+|+...+  ..|+...-+..++........+.|...  ...+..+.
T Consensus       230 y~~AV~~~e~v~eQn~~yl~evl~--~L~~~Y~~lg~~~~~--~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l  305 (389)
T COG2956         230 YQKAVEALERVLEQNPEYLSEVLE--MLYECYAQLGKPAEG--LNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYL  305 (389)
T ss_pred             hHHHHHHHHHHHHhChHHHHHHHH--HHHHHHHHhCCHHHH--HHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHH
Confidence            99999999999999998766 332  366778888888777  677777767777777777777777755  67778888


Q ss_pred             ccchhchhhhhhhhhhhcccCC-CCCCCCCCCCCcc-cccccCCCCcCCccccchhhhhhhccccccccCccCCCCC
Q 009850          357 NANIVVNQTVLAQQRGVQQLAP-FGNSWNIDAPPFY-SSKFVKEPIVKDPIGNQYHESLKRTRSGNATNSMRLPDVG  431 (524)
Q Consensus       357 ~~~l~~~~~~~~~~~~~~~~~~-~~~~l~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~  431 (524)
                      ..++..+|++....++...-.. ........  .++ ..++.-+.+..+|+       .+|+.-|..+..+--||-+
T Consensus       306 ~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~--sL~~lr~mvge~l~~~~~-------YRC~~CGF~a~~l~W~CPs  373 (389)
T COG2956         306 TRQLRRKPTMRGFHRLMDYHLADAEEGRAKE--SLDLLRDMVGEQLRRKPR-------YRCQNCGFTAHTLYWHCPS  373 (389)
T ss_pred             HHHHhhCCcHHHHHHHHHhhhccccccchhh--hHHHHHHHHHHHHhhcCC-------ceecccCCcceeeeeeCCC
Confidence            9999999999999998764111 11111111  122 12333333222222       6688888888877766654

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.73  E-value=1.8e-15  Score=151.36  Aligned_cols=165  Identities=14%  Similarity=0.062  Sum_probs=132.2

Q ss_pred             HHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Q 009850           37 HAIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQE  116 (524)
Q Consensus        37 ~~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~  116 (524)
                      +++...|..+.+|+.+|.++...|++++|+..|+++++++|++..++.++|.++...|++++|+..|+++++.+|+++..
T Consensus        89 ~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~  168 (296)
T PRK11189         89 QALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYR  168 (296)
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence            35566788999999999999999999999999999999999999999999999999999999999999999999998742


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 009850          117 SLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAE  196 (524)
Q Consensus       117 ~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi  196 (524)
                      .++.   .++...+++++|+..|.+++...                         +|+   .|. .+.++...|++.++ 
T Consensus       169 ~~~~---~l~~~~~~~~~A~~~l~~~~~~~-------------------------~~~---~~~-~~~~~~~lg~~~~~-  215 (296)
T PRK11189        169 ALWL---YLAESKLDPKQAKENLKQRYEKL-------------------------DKE---QWG-WNIVEFYLGKISEE-  215 (296)
T ss_pred             HHHH---HHHHccCCHHHHHHHHHHHHhhC-------------------------Ccc---ccH-HHHHHHHccCCCHH-
Confidence            2222   23456789999999998766440                         222   222 45666667776443 


Q ss_pred             HHHHHH-------HhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHH
Q 009850          197 DAYRRA-------LSIAPDNNK-MCNLGICLMKQGRIGEAKETLRR  234 (524)
Q Consensus       197 ~~~~~A-------l~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~  234 (524)
                      ..+..+       .++.|.... |+++|.++..+|++++|+.+|++
T Consensus       216 ~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~  261 (296)
T PRK11189        216 TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKL  261 (296)
T ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            233333       355666667 99999999999999999999993

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.73  E-value=3e-17  Score=163.17  Aligned_cols=242  Identities=19%  Similarity=0.158  Sum_probs=90.9

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 009850           49 YVRAKNVQLVDKDPEKAIPLFWAAINA--GDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLY  126 (524)
Q Consensus        49 ~~~lg~~~~~~g~~~~Ai~~~~~al~~--~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~  126 (524)
                      .+.+|.+++..|++++|+..+.+.+..  .|+++..|..+|.+...++++++|+..|++++..++.++  ..+..++.+ 
T Consensus        11 ~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~--~~~~~l~~l-   87 (280)
T PF13429_consen   11 ALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANP--QDYERLIQL-   87 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--ccccccccc-
Confidence            346688888888888888888665543  477888888888888888888888888888888777654  344455555 


Q ss_pred             HHcCChHHHHHHHHHHHHHhhccHh--------hhcccHHHHHHHhHHHH-HhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 009850          127 KRCGRLDDQIALLKHKLYLIQQGLA--------FNGKRTKTARSQGKKFQ-VSVEQEATRLLGNLGWALMQQNNYIEAED  197 (524)
Q Consensus       127 ~~~g~~~eA~~~~~~al~l~~~~~~--------~~~~~~~~a~~~~~~~~-~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~  197 (524)
                      ...+++++|+.+++++.+.......        ...+..+.+........ ....+.++.+|..+|.++.+.|++++|+.
T Consensus        88 ~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~  167 (280)
T PF13429_consen   88 LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR  167 (280)
T ss_dssp             ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred             cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            5778888888887776654321111        11123333333333222 11136778999999999999999999999


Q ss_pred             HHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCC-------------cCHHHHHHHHHHHHHhCCCC
Q 009850          198 AYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGP-------------RGVDSHLKAYERAQQMLKDL  263 (524)
Q Consensus       198 ~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~-------------~~~~~A~~~~~~al~~~p~~  263 (524)
                      +|+++++++|+++. +..++.++...|+++++...+.......+.++             ++.+.|+..|++++...|++
T Consensus       168 ~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d  247 (280)
T PF13429_consen  168 DYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDD  247 (280)
T ss_dssp             HHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccc
Confidence            99999999999999 88999999999999997777776644443332             78889999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHhhcccC
Q 009850          264 ESEMMNKGGDRVEQSRLFDAFLGSSSIWQP  293 (524)
Q Consensus       264 ~~a~~~lg~~~~~~g~~~eAi~~~~~al~~  293 (524)
                      +..+..+|.++...|+.++|...++++|+.
T Consensus       248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~  277 (280)
T PF13429_consen  248 PLWLLAYADALEQAGRKDEALRLRRQALRL  277 (280)
T ss_dssp             HHHHHHHHHHHT------------------
T ss_pred             cccccccccccccccccccccccccccccc
Confidence            999999999999999999999999888753

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.71  E-value=5e-15  Score=166.75  Aligned_cols=286  Identities=13%  Similarity=0.054  Sum_probs=215.1

Q ss_pred             hhhhhhhHHHHhc-CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009850           29 SRTRSDSFHAIHK-VPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLR  107 (524)
Q Consensus        29 l~~~~~~~~~~~~-~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al  107 (524)
                      ...+...+..... .|....++..+|..+...|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++
T Consensus        31 ~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l  110 (765)
T PRK10049         31 DAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLV  110 (765)
T ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            3334444554443 567777899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhc---------ccHH--------------------
Q 009850          108 SRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNG---------KRTK--------------------  158 (524)
Q Consensus       108 ~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~---------~~~~--------------------  158 (524)
                      +.+|+++  . +..+|.++...|++++|+..|++++++.+.......         ...+                    
T Consensus       111 ~~~P~~~--~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~  187 (765)
T PRK10049        111 SGAPDKA--N-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLE  187 (765)
T ss_pred             HhCCCCH--H-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHH
Confidence            9999998  5 788999999999999999999999998744322100         1111                    


Q ss_pred             --------------------------HHHHHhHHHHH--hcCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 009850          159 --------------------------TARSQGKKFQV--SVEQEA----TRLLGNLGWALMQQNNYIEAEDAYRRALSIA  206 (524)
Q Consensus       159 --------------------------~a~~~~~~~~~--~~~p~~----~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~  206 (524)
                                                .+....+.+..  ..+|+.    ..++.....++...|++++|+..|+++++..
T Consensus       188 ~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~  267 (765)
T PRK10049        188 ADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEG  267 (765)
T ss_pred             HHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccC
Confidence                                      00101111110  123332    2233332334467899999999999999987


Q ss_pred             CCcHH--HHHHHHHHHHcCCHHHHHHHHHHhcccccCC-----------------CcCHHHHHHHHHHHHHhCCC-----
Q 009850          207 PDNNK--MCNLGICLMKQGRIGEAKETLRRVKPAVADG-----------------PRGVDSHLKAYERAQQMLKD-----  262 (524)
Q Consensus       207 P~~~~--~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~-----------------~~~~~~A~~~~~~al~~~p~-----  262 (524)
                      |..+.  ...+|.+|..+|++++|+..|+++....+..                 .+.+++|+..++++....|.     
T Consensus       268 ~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~  347 (765)
T PRK10049        268 QIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLY  347 (765)
T ss_pred             CCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeec
Confidence            54443  3446999999999999999999986655433                 16778899999999988773     


Q ss_pred             ----------CHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCcccccccccccccccccccc
Q 009850          263 ----------LESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTTNAIKTRDDFADENID  319 (524)
Q Consensus       263 ----------~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~l~~~~l~~~~q~lgd~~~~  319 (524)
                                ...++..+|.++...|++++|+..+++++...|.+......  +.......|+....
T Consensus       348 ~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~--lA~l~~~~g~~~~A  412 (765)
T PRK10049        348 GSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRID--YASVLQARGWPRAA  412 (765)
T ss_pred             CCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH--HHHHHHhcCCHHHH
Confidence                      24577889999999999999999999999999999875533  33343444554433

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.69  E-value=4e-16  Score=160.90  Aligned_cols=339  Identities=13%  Similarity=0.090  Sum_probs=241.7

Q ss_pred             CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 009850           42 VPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNI  121 (524)
Q Consensus        42 ~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~  121 (524)
                      +|....++|..+.-.++.++|...+...+.+++..|++++.+-..|..+..+|+-++|..+.+.++..++.+.  .+|..
T Consensus         3 l~~KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~--vCwHv   80 (700)
T KOG1156|consen    3 LSPKENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSH--VCWHV   80 (700)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccc--hhHHH
Confidence            4555667899999999999999999999999999999999999999999999999999999999999999886  78999


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 009850          122 LLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRR  201 (524)
Q Consensus       122 lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~  201 (524)
                      +|.++....+|++|+.+|+.|+.+                          +|++..+|..++.+..++|+|+.......+
T Consensus        81 ~gl~~R~dK~Y~eaiKcy~nAl~~--------------------------~~dN~qilrDlslLQ~QmRd~~~~~~tr~~  134 (700)
T KOG1156|consen   81 LGLLQRSDKKYDEAIKCYRNALKI--------------------------EKDNLQILRDLSLLQIQMRDYEGYLETRNQ  134 (700)
T ss_pred             HHHHHhhhhhHHHHHHHHHHHHhc--------------------------CCCcHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence            999999999999999999999999                          999999999999999999999999999999


Q ss_pred             HHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCC---------------------cCHHHHHHHHHHHHHh
Q 009850          202 ALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGP---------------------RGVDSHLKAYERAQQM  259 (524)
Q Consensus       202 Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~---------------------~~~~~A~~~~~~al~~  259 (524)
                      .+++.|.... |...+.++...|++..|....+.........+                     +..+.+++.+..--..
T Consensus       135 LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~  214 (700)
T KOG1156|consen  135 LLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ  214 (700)
T ss_pred             HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH
Confidence            9999999988 99999999999999999998887644332111                     2233333333332222


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCcccccccccccccccccccccccccchhhhhhhccccccc
Q 009850          260 LKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTTNAIKTRDDFADENIDSNVDVNPIVLSKHRSVKKLF  339 (524)
Q Consensus       260 ~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~l~~~~l~~~~q~lgd~~~~~~~~~l~~l~~~~~~~~~~~  339 (524)
                      .-+........|..+..++++++|+..|...+..+|++......  +..+.-.+-|....        +..-.......+
T Consensus       215 i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~--l~~~lgk~~d~~~~--------lk~ly~~ls~~y  284 (700)
T KOG1156|consen  215 IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEG--LEKALGKIKDMLEA--------LKALYAILSEKY  284 (700)
T ss_pred             HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHH--HHHHHHHHhhhHHH--------HHHHHHHHhhcC
Confidence            22333455667899999999999999999999999998875411  11110001111111        111222233334


Q ss_pred             cchhHHHhhhhhhhhhcccchhchhhhhhhhhhhcccCCCCCCCCCCCCCcccccccCCCCcCCccccchhhhhhhcccc
Q 009850          340 PTANAIKTQENFADENINANIVVNQTVLAQQRGVQQLAPFGNSWNIDAPPFYSSKFVKEPIVKDPIGNQYHESLKRTRSG  419 (524)
Q Consensus       340 p~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~  419 (524)
                      |+...+.+...-.....+....+...+   .+   .+.-++++++.+..|+|-+..... .++. ..-.++.++..++.+
T Consensus       285 ~r~e~p~Rlplsvl~~eel~~~vdkyL---~~---~l~Kg~p~vf~dl~SLyk~p~k~~-~le~-Lvt~y~~~L~~~~~f  356 (700)
T KOG1156|consen  285 PRHECPRRLPLSVLNGEELKEIVDKYL---RP---LLSKGVPSVFKDLRSLYKDPEKVA-FLEK-LVTSYQHSLSGTGMF  356 (700)
T ss_pred             cccccchhccHHHhCcchhHHHHHHHH---HH---HhhcCCCchhhhhHHHHhchhHhH-HHHH-HHHHHHhhcccccCC
Confidence            544444444222211111111111111   11   112288999999999995532111 1111 233356667777777


Q ss_pred             ccccCcc
Q 009850          420 NATNSMR  426 (524)
Q Consensus       420 ~~~~~~~  426 (524)
                      +..++=+
T Consensus       357 ~~~D~~~  363 (700)
T KOG1156|consen  357 NFLDDGK  363 (700)
T ss_pred             Ccccccc
Confidence            7766443

>PLN02789 farnesyltranstransferase

Probab=99.68  E-value=4.6e-15  Score=148.77  Aligned_cols=220  Identities=12%  Similarity=0.038  Sum_probs=183.2

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 009850           48 PYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQN-RAEEAIEAIKSLRSRCSDQAQESLDNILLDLY  126 (524)
Q Consensus        48 ~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g-~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~  126 (524)
                      ++-.+-.++...+++++|+..+.++|.++|++..+|..++.++..+| ++++++..+.+++..+|++.  .+|+..+.++
T Consensus        39 a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkny--qaW~~R~~~l  116 (320)
T PLN02789         39 AMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNY--QIWHHRRWLA  116 (320)
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcch--HHhHHHHHHH
Confidence            34334445677889999999999999999999999999999999999 68999999999999999997  6788888888


Q ss_pred             HHcCCh--HHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009850          127 KRCGRL--DDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALS  204 (524)
Q Consensus       127 ~~~g~~--~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~  204 (524)
                      ...|+.  ++++.++.++++.                          +|++..+|..+|+++...|+|++|++++.++++
T Consensus       117 ~~l~~~~~~~el~~~~kal~~--------------------------dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~  170 (320)
T PLN02789        117 EKLGPDAANKELEFTRKILSL--------------------------DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLE  170 (320)
T ss_pred             HHcCchhhHHHHHHHHHHHHh--------------------------CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            888874  7789999999988                          999999999999999999999999999999999


Q ss_pred             hCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCC
Q 009850          205 IAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVE----QSR  279 (524)
Q Consensus       205 l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~----~g~  279 (524)
                      .+|.+.. |+.++.++...|+...    ++          ...++.+....+++...|++..+|..++.++..    +++
T Consensus       171 ~d~~N~sAW~~R~~vl~~~~~l~~----~~----------~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~  236 (320)
T PLN02789        171 EDVRNNSAWNQRYFVITRSPLLGG----LE----------AMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVS  236 (320)
T ss_pred             HCCCchhHHHHHHHHHHhcccccc----cc----------ccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCccccc
Confidence            9999999 9999999887643110    00          012334555569999999999999999999988    456


Q ss_pred             HHHHHHHHhhcccCCCCCCCcccccccccc
Q 009850          280 LFDAFLGSSSIWQPQPCKDHILPTTNAIKT  309 (524)
Q Consensus       280 ~~eAi~~~~~al~~~P~~~~~l~~~~l~~~  309 (524)
                      ..+|+..+..+++.+|.+...+..+.-+++
T Consensus       237 ~~~~~~~~~~~~~~~~~s~~al~~l~d~~~  266 (320)
T PLN02789        237 DPEVSSVCLEVLSKDSNHVFALSDLLDLLC  266 (320)
T ss_pred             chhHHHHHHHhhcccCCcHHHHHHHHHHHH
Confidence            688999999988888877765544344554

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.68  E-value=9.9e-15  Score=138.77  Aligned_cols=172  Identities=14%  Similarity=0.055  Sum_probs=155.6

Q ss_pred             HHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 009850           38 AIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQES  117 (524)
Q Consensus        38 ~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~  117 (524)
                      ++...|.....+..+|.++...|++++|+..|++++...|.+..++..+|.++...|++++|+..+++++...+......
T Consensus        57 ~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  136 (234)
T TIGR02521        57 ALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPAR  136 (234)
T ss_pred             HHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchH
Confidence            34556788889999999999999999999999999999999999999999999999999999999999998643222235


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 009850          118 LDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAED  197 (524)
Q Consensus       118 l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~  197 (524)
                      .+..+|.++...|++++|...|.+++..                          +|++..++..+|.++...|++++|+.
T Consensus       137 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------------------------~~~~~~~~~~la~~~~~~~~~~~A~~  190 (234)
T TIGR02521       137 SLENAGLCALKAGDFDKAEKYLTRALQI--------------------------DPQRPESLLELAELYYLRGQYKDARA  190 (234)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------------------CcCChHHHHHHHHHHHHcCCHHHHHH
Confidence            6778899999999999999999999988                          88889999999999999999999999


Q ss_pred             HHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHh
Q 009850          198 AYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRV  235 (524)
Q Consensus       198 ~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a  235 (524)
                      ++++++...|.++. +..++.++...|+.++|..+.+.+
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  229 (234)
T TIGR02521       191 YLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQL  229 (234)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            99999999888877 778999999999999999988754

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.67  E-value=2.9e-15  Score=153.27  Aligned_cols=185  Identities=21%  Similarity=0.252  Sum_probs=165.9

Q ss_pred             hhhhhhhHHH-HhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009850           29 SRTRSDSFHA-IHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLR  107 (524)
Q Consensus        29 l~~~~~~~~~-~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al  107 (524)
                      +..+...|++ +...|...++|..||.+....++-..||..++++++++|++-+++..||..|...|.-.+|+.++.+.+
T Consensus       301 L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi  380 (579)
T KOG1125|consen  301 LSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWI  380 (579)
T ss_pred             chHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence            5556666664 467899999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             HhCCCcH-----------------------------------------HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Q 009850          108 SRCSDQA-----------------------------------------QESLDNILLDLYKRCGRLDDQIALLKHKLYLI  146 (524)
Q Consensus       108 ~~~p~~~-----------------------------------------~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~  146 (524)
                      ...|...                                         ...+...||.+|...|+|++|+.+|+.||.. 
T Consensus       381 ~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v-  459 (579)
T KOG1125|consen  381 RNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQV-  459 (579)
T ss_pred             HhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhc-
Confidence            7654211                                         1245668999999999999999999999998 


Q ss_pred             hccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCH
Q 009850          147 QQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRI  225 (524)
Q Consensus       147 ~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~  225 (524)
                                               +|++...|+.||..+....+.++|+..|++|+++.|.... ++|||.+++.+|-|
T Consensus       460 -------------------------~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~y  514 (579)
T KOG1125|consen  460 -------------------------KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAY  514 (579)
T ss_pred             -------------------------CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhH
Confidence                                     9999999999999999999999999999999999999999 99999999999999


Q ss_pred             HHHHHHHHHhcccc
Q 009850          226 GEAKETLRRVKPAV  239 (524)
Q Consensus       226 ~eA~~~~~~a~~~~  239 (524)
                      .+|+.+|-.|+...
T Consensus       515 kEA~~hlL~AL~mq  528 (579)
T KOG1125|consen  515 KEAVKHLLEALSMQ  528 (579)
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999765443

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.67  E-value=1.3e-14  Score=154.93  Aligned_cols=243  Identities=11%  Similarity=0.044  Sum_probs=185.9

Q ss_pred             CCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 009850           43 PVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNIL  122 (524)
Q Consensus        43 p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~l  122 (524)
                      +......+..|+..+..|++++|..++.++|+.+|.++.+|+.||.+|.++|+.+++....-.|-.++|.+.  ..|..+
T Consensus       136 ~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~--e~W~~l  213 (895)
T KOG2076|consen  136 APELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDY--ELWKRL  213 (895)
T ss_pred             CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCh--HHHHHH
Confidence            334456788899999999999999999999999999999999999999999999999999999999999997  889999


Q ss_pred             HHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009850          123 LDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRA  202 (524)
Q Consensus       123 g~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~A  202 (524)
                      +....++|.+++|.-+|.+|++.                          +|.+....+..+.+|.+.|++..|...|.++
T Consensus       214 adls~~~~~i~qA~~cy~rAI~~--------------------------~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l  267 (895)
T KOG2076|consen  214 ADLSEQLGNINQARYCYSRAIQA--------------------------NPSNWELIYERSSLYQKTGDLKRAMETFLQL  267 (895)
T ss_pred             HHHHHhcccHHHHHHHHHHHHhc--------------------------CCcchHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence            99999999999999999999999                          6777777777777777777777777777777


Q ss_pred             HhhCCCcHH------HHHHHHHHHHcCCHHHHHHHHHHhcccccCC----------------------------------
Q 009850          203 LSIAPDNNK------MCNLGICLMKQGRIGEAKETLRRVKPAVADG----------------------------------  242 (524)
Q Consensus       203 l~l~P~~~~------~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~----------------------------------  242 (524)
                      +.+.|....      ....+..+...++-+.|+..++.+.....+.                                  
T Consensus       268 ~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~  347 (895)
T KOG2076|consen  268 LQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRES  347 (895)
T ss_pred             HhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhcccc
Confidence            777772211      1223444444444455555444432200000                                  


Q ss_pred             ------C-------------------------------------------------------------------------
Q 009850          243 ------P-------------------------------------------------------------------------  243 (524)
Q Consensus       243 ------~-------------------------------------------------------------------------  243 (524)
                            +                                                                         
T Consensus       348 e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~  427 (895)
T KOG2076|consen  348 EKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNI  427 (895)
T ss_pred             CCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhc
Confidence                  0                                                                         


Q ss_pred             cCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCcccccccccccccccc
Q 009850          244 RGVDSHLKAYERAQQMLK-DLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTTNAIKTRDDFAD  315 (524)
Q Consensus       244 ~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~l~~~~l~~~~q~lgd  315 (524)
                      +.+.+|+..|.......+ +.+.+|+.+|.||..+|.+++|+.+|++++..+|.+.....++.-++  +++|+
T Consensus       428 ~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~--~~~g~  498 (895)
T KOG2076|consen  428 GKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLY--QQLGN  498 (895)
T ss_pred             ccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHH--HhcCC
Confidence            334455666666655544 34668999999999999999999999999999999999765534444  44454

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.67  E-value=5.4e-17  Score=161.29  Aligned_cols=222  Identities=18%  Similarity=0.159  Sum_probs=98.6

Q ss_pred             cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHh-
Q 009850           75 AGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRC--SDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLA-  151 (524)
Q Consensus        75 ~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~--p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~-  151 (524)
                      ..|. .. ...+|.++...|++++|++.+.+.+...  |++.  .++..+|.+....+++++|+..|++++...+.... 
T Consensus         5 ~~~~-~~-~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~--~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~   80 (280)
T PF13429_consen    5 FGPS-EE-ALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDP--EYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQD   80 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccc-cc-cccccccccccccccccccccccccccccccccc--cccccccccccccccccccccccccccccccccccc
Confidence            4455 23 3477999999999999999997765544  5665  67788999999999999999999999987643222 


Q ss_pred             -------hhcccHHHHHHH-hHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCcHH-HHHHHHHHH
Q 009850          152 -------FNGKRTKTARSQ-GKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIA--PDNNK-MCNLGICLM  220 (524)
Q Consensus       152 -------~~~~~~~~a~~~-~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~--P~~~~-~~~Lg~~~~  220 (524)
                             +..+..+.+... ...+.   ...++..+..+..++...++++++...++++....  +.++. |+.+|.++.
T Consensus        81 ~~~l~~l~~~~~~~~A~~~~~~~~~---~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~  157 (280)
T PF13429_consen   81 YERLIQLLQDGDPEEALKLAEKAYE---RDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYE  157 (280)
T ss_dssp             ----------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccc---cccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHH
Confidence                   111222222222 12221   23456677788888999999999999999988755  55666 899999999


Q ss_pred             HcCCHHHHHHHHHHhcccccCCC-------------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 009850          221 KQGRIGEAKETLRRVKPAVADGP-------------RGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGS  287 (524)
Q Consensus       221 ~~G~~~eA~~~~~~a~~~~~~~~-------------~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~  287 (524)
                      +.|++++|+.+|++++...|++.             +..+++...+.......|.++..+..+|.++..+|++++|+..|
T Consensus       158 ~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~  237 (280)
T PF13429_consen  158 QLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYL  237 (280)
T ss_dssp             HCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccc
Confidence            99999999999999999998865             66677777787777777888889999999999999999999999


Q ss_pred             hhcccCCCCCCCcccc
Q 009850          288 SSIWQPQPCKDHILPT  303 (524)
Q Consensus       288 ~~al~~~P~~~~~l~~  303 (524)
                      ++++..+|.++..+..
T Consensus       238 ~~~~~~~p~d~~~~~~  253 (280)
T PF13429_consen  238 EKALKLNPDDPLWLLA  253 (280)
T ss_dssp             HHHHHHSTT-HHHHHH
T ss_pred             cccccccccccccccc
Confidence            9999999999987733

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.65  E-value=1.3e-14  Score=147.33  Aligned_cols=233  Identities=15%  Similarity=0.166  Sum_probs=192.7

Q ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-----HHHHHH
Q 009850           46 DTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQA-----QESLDN  120 (524)
Q Consensus        46 ~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~-----~~~l~~  120 (524)
                      ......+|...+...++..|+++|..++.++ .+...+.+.+.+|...|.+.+.+.....+++.....-     ......
T Consensus       224 a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~  302 (539)
T KOG0548|consen  224 AHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALA  302 (539)
T ss_pred             hhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHH
Confidence            3457889999999999999999999999999 8888999999999999999999999999887765321     112333


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcc-cHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 009850          121 ILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGK-RTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAY  199 (524)
Q Consensus       121 ~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~-~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~  199 (524)
                      .+|..|...++++.|+.+|.+++......-.+... ..+.+... ......++|.-..-...-|+.+++.|+|..|+.+|
T Consensus       303 r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~-~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Y  381 (539)
T KOG0548|consen  303 RLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKE-AERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHY  381 (539)
T ss_pred             HhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHH-HHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHH
Confidence            46668888999999999999988764332222221 11111111 11123447777777788899999999999999999


Q ss_pred             HHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 009850          200 RRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQS  278 (524)
Q Consensus       200 ~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g  278 (524)
                      .+|+..+|+++. |+|+|.||.++|.+..|+..++                     .+++++|++..+|+..|.++..+.
T Consensus       382 teAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~---------------------~~ieL~p~~~kgy~RKg~al~~mk  440 (539)
T KOG0548|consen  382 TEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAK---------------------KCIELDPNFIKAYLRKGAALRAMK  440 (539)
T ss_pred             HHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHH---------------------HHHhcCchHHHHHHHHHHHHHHHH
Confidence            999999999999 9999999999999999999988                     788999999999999999999999


Q ss_pred             CHHHHHHHHhhcccCCCCCCCcc
Q 009850          279 RLFDAFLGSSSIWQPQPCKDHIL  301 (524)
Q Consensus       279 ~~~eAi~~~~~al~~~P~~~~~l  301 (524)
                      +|+.|+..|+.+++.+|.+...+
T Consensus       441 ~ydkAleay~eale~dp~~~e~~  463 (539)
T KOG0548|consen  441 EYDKALEAYQEALELDPSNAEAI  463 (539)
T ss_pred             HHHHHHHHHHHHHhcCchhHHHH
Confidence            99999999999999999988755

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.65  E-value=1.8e-14  Score=146.87  Aligned_cols=245  Identities=11%  Similarity=0.041  Sum_probs=209.8

Q ss_pred             hcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 009850           40 HKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLD  119 (524)
Q Consensus        40 ~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~  119 (524)
                      +.+..+.+.....+..++..++|.+-.+++...++.+|-+..++-..-.++..+|+..+=...-.+.++.+|+.+  ..|
T Consensus       238 ~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a--~sW  315 (611)
T KOG1173|consen  238 IGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKA--LSW  315 (611)
T ss_pred             hhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCC--cch
Confidence            344455666777888889999999999999999999998888776555599999998888888889999999887  677


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 009850          120 NILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAY  199 (524)
Q Consensus       120 ~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~  199 (524)
                      +..|..|...|++.+|..+|.++..+                          +|....+|...|..+.-.|.-++|+.+|
T Consensus       316 ~aVg~YYl~i~k~seARry~SKat~l--------------------------D~~fgpaWl~fghsfa~e~EhdQAmaaY  369 (611)
T KOG1173|consen  316 FAVGCYYLMIGKYSEARRYFSKATTL--------------------------DPTFGPAWLAFGHSFAGEGEHDQAMAAY  369 (611)
T ss_pred             hhHHHHHHHhcCcHHHHHHHHHHhhc--------------------------CccccHHHHHHhHHhhhcchHHHHHHHH
Confidence            88899999999999999999999888                          8889999999999999999999999999


Q ss_pred             HHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCC-------------cCHHHHHHHHHHHHHhCC----
Q 009850          200 RRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGP-------------RGVDSHLKAYERAQQMLK----  261 (524)
Q Consensus       200 ~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~-------------~~~~~A~~~~~~al~~~p----  261 (524)
                      ..|-++-|.... ...+|.-|.+++++.-|..+|.+|....|.++             ..+.+|...|+.++...+    
T Consensus       370 ~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~  449 (611)
T KOG1173|consen  370 FTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLN  449 (611)
T ss_pred             HHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccc
Confidence            999999888766 77789999999999999999999988888776             566788888888884432    


Q ss_pred             ---CCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCccccccccccccc
Q 009850          262 ---DLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTTNAIKTRDD  312 (524)
Q Consensus       262 ---~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~l~~~~l~~~~q~  312 (524)
                         .+...+.|||.++.+++++++|+.+|++++.+.|.+..+....+.+|...|
T Consensus       450 e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llg  503 (611)
T KOG1173|consen  450 EKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLG  503 (611)
T ss_pred             cccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhc
Confidence               355678999999999999999999999999999999998877666666544

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.65  E-value=1.7e-14  Score=150.94  Aligned_cols=232  Identities=22%  Similarity=0.198  Sum_probs=168.7

Q ss_pred             CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--
Q 009850           42 VPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINA--------GDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCS--  111 (524)
Q Consensus        42 ~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~--------~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p--  111 (524)
                      .|.-..+...+|..|..+|+|+.|+..++++++.        .|.-......+|.+|..++++.+|+..|++++.+.-  
T Consensus       195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~  274 (508)
T KOG1840|consen  195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV  274 (508)
T ss_pred             CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence            3455556677999999999999999999999998        566666677799999999999999999999998743  


Q ss_pred             ---CcHH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHH
Q 009850          112 ---DQAQ-ESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALM  187 (524)
Q Consensus       112 ---~~~~-~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~  187 (524)
                         +++. ..++..|+.+|...|++++|..++++++++...-.                  ....|+-...+.+++.++.
T Consensus       275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~------------------~~~~~~v~~~l~~~~~~~~  336 (508)
T KOG1840|consen  275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLL------------------GASHPEVAAQLSELAAILQ  336 (508)
T ss_pred             cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhh------------------ccChHHHHHHHHHHHHHHH
Confidence               3432 56788999999999999999999999999842200                  0112334556677777777


Q ss_pred             HcCCHHHHHHHHHHHHhhC-----CCc---HH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCC---------------
Q 009850          188 QQNNYIEAEDAYRRALSIA-----PDN---NK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGP---------------  243 (524)
Q Consensus       188 ~~g~~~eAi~~~~~Al~l~-----P~~---~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~---------------  243 (524)
                      ..+++++|+.+|++++++-     +++   +. +++||.+|..+|++.+|...|++|+.......               
T Consensus       337 ~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la  416 (508)
T KOG1840|consen  337 SMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLA  416 (508)
T ss_pred             HhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHH
Confidence            7777777777777777642     233   11 66777777777777777777777643321111               


Q ss_pred             ------cCHHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcc
Q 009850          244 ------RGVDSHLKAYERAQQ-------MLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIW  291 (524)
Q Consensus       244 ------~~~~~A~~~~~~al~-------~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al  291 (524)
                            ....+|.+.|.++..       ..|+....+.||+.+|..+|++++|+..-..++
T Consensus       417 ~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  417 EAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL  477 (508)
T ss_pred             HHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence                  122223333433333       245667789999999999999999999877665

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.64  E-value=2e-14  Score=138.87  Aligned_cols=188  Identities=11%  Similarity=0.021  Sum_probs=150.2

Q ss_pred             CCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-HHH
Q 009850           43 PVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVD---SALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQ-ESL  118 (524)
Q Consensus        43 p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~---~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~-~~l  118 (524)
                      +...+.++.+|..++..|++++|+..|++++..+|+++   .+++.+|.++...|++++|+..|+++++.+|+++. ...
T Consensus        30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a  109 (235)
T TIGR03302        30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA  109 (235)
T ss_pred             cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence            45677899999999999999999999999999999876   67899999999999999999999999999997753 235


Q ss_pred             HHHHHHHHHHc--------CChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 009850          119 DNILLDLYKRC--------GRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQN  190 (524)
Q Consensus       119 ~~~lg~~~~~~--------g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g  190 (524)
                      ++.+|.++...        |++++|++.|++++..++.......-..    .....     ..........+|.+++..|
T Consensus       110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~----~~~~~-----~~~~~~~~~~~a~~~~~~g  180 (235)
T TIGR03302       110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKK----RMDYL-----RNRLAGKELYVARFYLKRG  180 (235)
T ss_pred             HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHH----HHHHH-----HHHHHHHHHHHHHHHHHcC
Confidence            67788888876        8899999999999988554322111000    00000     0111223467899999999


Q ss_pred             CHHHHHHHHHHHHhhCCCcH---H-HHHHHHHHHHcCCHHHHHHHHHHhcccc
Q 009850          191 NYIEAEDAYRRALSIAPDNN---K-MCNLGICLMKQGRIGEAKETLRRVKPAV  239 (524)
Q Consensus       191 ~~~eAi~~~~~Al~l~P~~~---~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~  239 (524)
                      ++.+|+..|++++...|+.+   . ++.+|.++..+|++++|+.+++.+...+
T Consensus       181 ~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~  233 (235)
T TIGR03302       181 AYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY  233 (235)
T ss_pred             ChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            99999999999999987753   4 8999999999999999999998764444

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.64  E-value=8.7e-14  Score=148.62  Aligned_cols=237  Identities=18%  Similarity=0.126  Sum_probs=187.2

Q ss_pred             HHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Q 009850           37 HAIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQE  116 (524)
Q Consensus        37 ~~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~  116 (524)
                      +++...|..+.+|+.||.+|-.+|+.++++..+-.|--++|.+.+.|..++....++|++++|.-+|.+|++.+|.+-  
T Consensus       164 EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~--  241 (895)
T KOG2076|consen  164 EVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNW--  241 (895)
T ss_pred             HHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcch--
Confidence            466778999999999999999999999999999999999999999999999999999999999999999999999885  


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHh-------------hh-c-ccHHHHHHHhHH---------------
Q 009850          117 SLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLA-------------FN-G-KRTKTARSQGKK---------------  166 (524)
Q Consensus       117 ~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~-------------~~-~-~~~~~a~~~~~~---------------  166 (524)
                      .+.+..+.+|.+.|+...|...|.+++++.+..-.             +. . ....++..+..+               
T Consensus       242 ~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni  321 (895)
T KOG2076|consen  242 ELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNI  321 (895)
T ss_pred             HHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHH
Confidence            56677788999999999999999998877530000             00 0 000000000000               


Q ss_pred             --------------------------------------------------------------------------------
Q 009850          167 --------------------------------------------------------------------------------  166 (524)
Q Consensus       167 --------------------------------------------------------------------------------  166 (524)
                                                                                                      
T Consensus       322 ~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~  401 (895)
T KOG2076|consen  322 LAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLH  401 (895)
T ss_pred             HHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHH
Confidence                                                                                            


Q ss_pred             HHHhcC--C-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH--HHHHHHHHHHcCCHHHHHHHHHHhcccccC
Q 009850          167 FQVSVE--Q-EATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK--MCNLGICLMKQGRIGEAKETLRRVKPAVAD  241 (524)
Q Consensus       167 ~~~~~~--p-~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~--~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~  241 (524)
                      +....+  | ++++.+..++.+|...|+|.+|+.+|..+....+....  |+.+|.||..+|.+++|+.+|+        
T Consensus       402 ~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~--------  473 (895)
T KOG2076|consen  402 FLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYE--------  473 (895)
T ss_pred             HHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHH--------
Confidence            000111  2 23567778888888888888888888888887766554  8888888888888888888888        


Q ss_pred             CCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCC
Q 009850          242 GPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPC  296 (524)
Q Consensus       242 ~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~  296 (524)
                                   +++...|++..+...|+.++..+|+.++|++..+.....++.
T Consensus       474 -------------kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~  515 (895)
T KOG2076|consen  474 -------------KVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGR  515 (895)
T ss_pred             -------------HHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCcc
Confidence                         889999999999999999999999999999999998855544

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.63  E-value=4.4e-14  Score=138.91  Aligned_cols=234  Identities=15%  Similarity=0.085  Sum_probs=155.8

Q ss_pred             hcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 009850           40 HKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLD  119 (524)
Q Consensus        40 ~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~  119 (524)
                      ..++.+......+|.+++..|++.+|+..|+++..++|.+..+.-..|.++...|++++-..+....+.......  .-|
T Consensus       226 ~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta--~~w  303 (564)
T KOG1174|consen  226 TTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTA--SHW  303 (564)
T ss_pred             ccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcch--hhh
Confidence            334455555555555555555555555555555555555555555555555555555555544444444443222  222


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 009850          120 NILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAY  199 (524)
Q Consensus       120 ~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~  199 (524)
                      +.-+.+++..+++..|+.+-+++++.                          +|.+..++...|.++...|+.++|+-.|
T Consensus       304 fV~~~~l~~~K~~~rAL~~~eK~I~~--------------------------~~r~~~alilKG~lL~~~~R~~~A~IaF  357 (564)
T KOG1174|consen  304 FVHAQLLYDEKKFERALNFVEKCIDS--------------------------EPRNHEALILKGRLLIALERHTQAVIAF  357 (564)
T ss_pred             hhhhhhhhhhhhHHHHHHHHHHHhcc--------------------------CcccchHHHhccHHHHhccchHHHHHHH
Confidence            33344444555555555555555555                          8999999999999999999999999999


Q ss_pred             HHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccC---------------CCcCHHHHHHHHHHHHHhCCCC
Q 009850          200 RRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVAD---------------GPRGVDSHLKAYERAQQMLKDL  263 (524)
Q Consensus       200 ~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~---------------~~~~~~~A~~~~~~al~~~p~~  263 (524)
                      +.|..+.|..-. |-.|-.+|...|++.||...-+.+....+.               ++...+.|.+.+++++.+.|.+
T Consensus       358 R~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y  437 (564)
T KOG1174|consen  358 RTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIY  437 (564)
T ss_pred             HHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCcc
Confidence            999999999988 889999999999999998877765333222               2345566767777777766665


Q ss_pred             HHH---------------------------------HHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCcc
Q 009850          264 ESE---------------------------------MMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL  301 (524)
Q Consensus       264 ~~a---------------------------------~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~l  301 (524)
                      ..+                                 |..||.++...+.+.+|+..|..+++++|.+...+
T Consensus       438 ~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl  508 (564)
T KOG1174|consen  438 TPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTL  508 (564)
T ss_pred             HHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHH
Confidence            544                                 55666667777777777777777777777776655

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.62  E-value=1.1e-14  Score=129.54  Aligned_cols=127  Identities=10%  Similarity=0.003  Sum_probs=113.8

Q ss_pred             HHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 009850           65 AIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLY  144 (524)
Q Consensus        65 Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~  144 (524)
                      -..+|+++++++|++   ++.+|.++...|++++|+.+|++++..+|.+.  .++..+|.++...|++++|+..|++++.
T Consensus        12 ~~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~--~a~~~lg~~~~~~g~~~~A~~~y~~Al~   86 (144)
T PRK15359         12 PEDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSW--RAHIALAGTWMMLKEYTTAINFYGHALM   86 (144)
T ss_pred             HHHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH--HHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            346788999999875   66789999999999999999999999999987  7888999999999999999999999998


Q ss_pred             HhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHc
Q 009850          145 LIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQ  222 (524)
Q Consensus       145 l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~  222 (524)
                      +                          +|+++.+++++|.++...|++++|+..|++++.+.|+++. +.++|.+...+
T Consensus        87 l--------------------------~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l  139 (144)
T PRK15359         87 L--------------------------DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV  139 (144)
T ss_pred             c--------------------------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence            8                          8999999999999999999999999999999999999998 77888776554

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.61  E-value=2e-14  Score=154.37  Aligned_cols=252  Identities=13%  Similarity=0.067  Sum_probs=166.1

Q ss_pred             HHHHHHHHHHcCCh--HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 009850           49 YVRAKNVQLVDKDP--EKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLY  126 (524)
Q Consensus        49 ~~~lg~~~~~~g~~--~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~  126 (524)
                      ++..+..++..|+.  +.|...|..+++..|++.-++.+.|.+.+..|+|..|+.+|++++.++|... .......|.++
T Consensus       131 l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~-aD~rIgig~Cf  209 (1018)
T KOG2002|consen  131 LLVQRGFLLLEGDKSMDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACK-ADVRIGIGHCF  209 (1018)
T ss_pred             hhhhhhhhhhcCCccHHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccC-CCccchhhhHH
Confidence            33334444444444  6777777777777777777777777777777777777777777777766431 12333445566


Q ss_pred             HHcCChHHHHHHHHHHHHHhhccHhh------hcccHHHHHHHhHHH-----HHhcCCCcHHHHHHHHHHHHHcCCHHHH
Q 009850          127 KRCGRLDDQIALLKHKLYLIQQGLAF------NGKRTKTARSQGKKF-----QVSVEQEATRLLGNLGWALMQQNNYIEA  195 (524)
Q Consensus       127 ~~~g~~~eA~~~~~~al~l~~~~~~~------~~~~~~~a~~~~~~~-----~~~~~p~~~~a~~~Lg~~~~~~g~~~eA  195 (524)
                      ..+|+.+.|+..|.+++++++.....      ....+.....+...+     ....++.+|.+++.|+.-++..|+|..+
T Consensus       210 ~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v  289 (1018)
T KOG2002|consen  210 WKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERV  289 (1018)
T ss_pred             HhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHH
Confidence            66677777777777777766432221      000111111111111     1233899999999999999999999999


Q ss_pred             HHHHHHHHhhCCCcH---H-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCC--------------cCHHHHHHHHHHHH
Q 009850          196 EDAYRRALSIAPDNN---K-MCNLGICLMKQGRIGEAKETLRRVKPAVADGP--------------RGVDSHLKAYERAQ  257 (524)
Q Consensus       196 i~~~~~Al~l~P~~~---~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~--------------~~~~~A~~~~~~al  257 (524)
                      ......++...-..+   . +|.+|.+|..+|++++|..+|.++....++..              +++..+..+|++.+
T Consensus       290 ~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~  369 (1018)
T KOG2002|consen  290 WHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVL  369 (1018)
T ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHH
Confidence            999999998663332   2 89999999999999999999998766665552              55666777777777


Q ss_pred             HhCCCCHHHHHHHHHHHHHcC----CHHHHHHHHhhcccCCCCCCCcc
Q 009850          258 QMLKDLESEMMNKGGDRVEQS----RLFDAFLGSSSIWQPQPCKDHIL  301 (524)
Q Consensus       258 ~~~p~~~~a~~~lg~~~~~~g----~~~eAi~~~~~al~~~P~~~~~l  301 (524)
                      ...|+..+....||.+|...+    ..+.|.....+++...|.+....
T Consensus       370 k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~  417 (1018)
T KOG2002|consen  370 KQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAW  417 (1018)
T ss_pred             HhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHH
Confidence            777777777777777776665    44666666777777776666533

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.61  E-value=2.1e-13  Score=142.22  Aligned_cols=240  Identities=8%  Similarity=-0.004  Sum_probs=181.4

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 009850           49 YVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDM-AIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYK  127 (524)
Q Consensus        49 ~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~L-a~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~  127 (524)
                      .+..|...+..||+++|.+.+.++-+..+ ++..++.+ +.+..+.|+++.|..++.++.+.+|++.. ......+.++.
T Consensus        87 ~~~~gl~a~~eGd~~~A~k~l~~~~~~~~-~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~-~~~l~~a~l~l  164 (398)
T PRK10747         87 QTEQALLKLAEGDYQQVEKLMTRNADHAE-QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQL-PVEITRVRIQL  164 (398)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchH-HHHHHHHHHHH
Confidence            45667777788888888877776555433 34444444 45558888888888888888888887642 12223477788


Q ss_pred             HcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--
Q 009850          128 RCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSI--  205 (524)
Q Consensus       128 ~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--  205 (524)
                      ..|++++|+..++++.+.                          +|+++.++..++.+|...|+|++|+..+.+..+.  
T Consensus       165 ~~g~~~~Al~~l~~~~~~--------------------------~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~  218 (398)
T PRK10747        165 ARNENHAARHGVDKLLEV--------------------------APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHV  218 (398)
T ss_pred             HCCCHHHHHHHHHHHHhc--------------------------CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCC
Confidence            888888888888888877                          7888888888888888888888888555554432  


Q ss_pred             ----------------------------------------CCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCC-
Q 009850          206 ----------------------------------------APDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGP-  243 (524)
Q Consensus       206 ----------------------------------------~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~-  243 (524)
                                                              .|+++. +..++..+...|+.++|...+++++...++.. 
T Consensus       219 ~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l  298 (398)
T PRK10747        219 GDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERL  298 (398)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH
Confidence                                                    233455 66788999999999999999999876443331 


Q ss_pred             ---------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCccccccccccccccc
Q 009850          244 ---------RGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTTNAIKTRDDFA  314 (524)
Q Consensus       244 ---------~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~l~~~~l~~~~q~lg  314 (524)
                               ++.+.+++..++.++..|+++..+..+|.++...|++.+|...|++++...|.+....   .+..+....|
T Consensus       299 ~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~---~La~~~~~~g  375 (398)
T PRK10747        299 VLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYA---WLADALDRLH  375 (398)
T ss_pred             HHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHH---HHHHHHHHcC
Confidence                     6778899999999999999999999999999999999999999999999999987633   2444455566


Q ss_pred             ccccc
Q 009850          315 DENID  319 (524)
Q Consensus       315 d~~~~  319 (524)
                      +....
T Consensus       376 ~~~~A  380 (398)
T PRK10747        376 KPEEA  380 (398)
T ss_pred             CHHHH
Confidence            65444

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.60  E-value=5.8e-15  Score=141.15  Aligned_cols=222  Identities=15%  Similarity=0.108  Sum_probs=154.2

Q ss_pred             CCccchhhhhhhHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 009850           24 KPLGVSRTRSDSFHAIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAI  103 (524)
Q Consensus        24 ~~~~~l~~~~~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~  103 (524)
                      .-++..+.+...++..-.--..++.+..|..+|.+..++..|+..|.+.+...|.+...+...+.++..++++++|.++|
T Consensus       234 lrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lY  313 (478)
T KOG1129|consen  234 LRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLY  313 (478)
T ss_pred             HHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHH
Confidence            33456666666666555555577889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHH
Q 009850          104 KSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLG  183 (524)
Q Consensus       104 ~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg  183 (524)
                      +.+++.+|.+.  ......+.-|+-.++.+-|+.+|++.+++.                          -.+++.++|+|
T Consensus       314 k~vlk~~~~nv--EaiAcia~~yfY~~~PE~AlryYRRiLqmG--------------------------~~speLf~Nig  365 (478)
T KOG1129|consen  314 KLVLKLHPINV--EAIACIAVGYFYDNNPEMALRYYRRILQMG--------------------------AQSPELFCNIG  365 (478)
T ss_pred             HHHHhcCCccc--eeeeeeeeccccCCChHHHHHHHHHHHHhc--------------------------CCChHHHhhHH
Confidence            99999999886  344455666778899999999999999883                          33344444444


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCC--CcHH--HHHHHHHHHHcCCHHHHHHHHHHhcccccCCC-------------cCH
Q 009850          184 WALMQQNNYIEAEDAYRRALSIAP--DNNK--MCNLGICLMKQGRIGEAKETLRRVKPAVADGP-------------RGV  246 (524)
Q Consensus       184 ~~~~~~g~~~eAi~~~~~Al~l~P--~~~~--~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~-------------~~~  246 (524)
                      .|.+..++++-++..|++|+....  +...  |+|+|.+....|++.-|..+|+-++..+++..             |+.
T Consensus       366 LCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i  445 (478)
T KOG1129|consen  366 LCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDI  445 (478)
T ss_pred             HHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCch
Confidence            444444444444444444444322  1111  44444444444444444444444443333321             344


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 009850          247 DSHLKAYERAQQMLKDLESEMMNKGGD  273 (524)
Q Consensus       247 ~~A~~~~~~al~~~p~~~~a~~~lg~~  273 (524)
                      +.|...+..+-...|+..+..+|++.+
T Consensus       446 ~~Arsll~~A~s~~P~m~E~~~Nl~~~  472 (478)
T KOG1129|consen  446 LGARSLLNAAKSVMPDMAEVTTNLQFM  472 (478)
T ss_pred             HHHHHHHHHhhhhCccccccccceeEE
Confidence            444444447777888888877777643

>PLN02789 farnesyltranstransferase

Probab=99.59  E-value=4.6e-13  Score=134.35  Aligned_cols=192  Identities=8%  Similarity=-0.052  Sum_probs=166.0

Q ss_pred             HHHhcCCCChHHHHHHHHHHHHcC-ChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCCc
Q 009850           37 HAIHKVPVGDTPYVRAKNVQLVDK-DPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRA--EEAIEAIKSLRSRCSDQ  113 (524)
Q Consensus        37 ~~~~~~p~~~~~~~~lg~~~~~~g-~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~--~eAi~~~~~al~~~p~~  113 (524)
                      +++...|....+|..+|.++...| ++++++..+.+++..+|.+..+|+.++.++..+|+.  ++++.++.+++..+|.+
T Consensus        62 ~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkN  141 (320)
T PLN02789         62 DVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKN  141 (320)
T ss_pred             HHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCccc
Confidence            355567888899999999999998 689999999999999999999999999999999974  78899999999999999


Q ss_pred             HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHc---C
Q 009850          114 AQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQ---N  190 (524)
Q Consensus       114 ~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~---g  190 (524)
                      .  .+|...+.++...|++++|++++.++|+.                          +|.+..+|+.+|.++...   |
T Consensus       142 y--~AW~~R~w~l~~l~~~~eeL~~~~~~I~~--------------------------d~~N~sAW~~R~~vl~~~~~l~  193 (320)
T PLN02789        142 Y--HAWSHRQWVLRTLGGWEDELEYCHQLLEE--------------------------DVRNNSAWNQRYFVITRSPLLG  193 (320)
T ss_pred             H--HHHHHHHHHHHHhhhHHHHHHHHHHHHHH--------------------------CCCchhHHHHHHHHHHhccccc
Confidence            7  78888899999999999999999999999                          999999999999998876   3


Q ss_pred             CH----HHHHHHHHHHHhhCCCcHH-HHHHHHHHHH----cCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCC
Q 009850          191 NY----IEAEDAYRRALSIAPDNNK-MCNLGICLMK----QGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLK  261 (524)
Q Consensus       191 ~~----~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~----~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p  261 (524)
                      .+    ++++.+..+++.++|++.. |..++.++..    +++..+|+..+.                     +++...|
T Consensus       194 ~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~---------------------~~~~~~~  252 (320)
T PLN02789        194 GLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCL---------------------EVLSKDS  252 (320)
T ss_pred             cccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHH---------------------HhhcccC
Confidence            33    5788888999999999988 9999999877    344555666666                     5666778


Q ss_pred             CCHHHHHHHHHHHHHc
Q 009850          262 DLESEMMNKGGDRVEQ  277 (524)
Q Consensus       262 ~~~~a~~~lg~~~~~~  277 (524)
                      ....++--|+.+|...
T Consensus       253 ~s~~al~~l~d~~~~~  268 (320)
T PLN02789        253 NHVFALSDLLDLLCEG  268 (320)
T ss_pred             CcHHHHHHHHHHHHhh
Confidence            8888888888888753

>TIGR00540 hemY_coli hemY protein

Probab=99.59  E-value=9.4e-13  Score=137.95  Aligned_cols=234  Identities=11%  Similarity=0.010  Sum_probs=152.3

Q ss_pred             CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 009850           42 VPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVD-SALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDN  120 (524)
Q Consensus        42 ~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~-~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~  120 (524)
                      .|...-.+...|.++...|+++.|..+|.++.+..|++. .+....+.++...|++++|...++++++..|+++  .+..
T Consensus       114 ~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~--~~l~  191 (409)
T TIGR00540       114 AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHK--EVLK  191 (409)
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH--HHHH
Confidence            344444556677888888888888888888888777764 4555568888888888888888888888888887  5667


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHhhccHh-h-------hcccHHH-HH----HHhHHHHHhcCC----CcHHHHHHHH
Q 009850          121 ILLDLYKRCGRLDDQIALLKHKLYLIQQGLA-F-------NGKRTKT-AR----SQGKKFQVSVEQ----EATRLLGNLG  183 (524)
Q Consensus       121 ~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~-~-------~~~~~~~-a~----~~~~~~~~~~~p----~~~~a~~~Lg  183 (524)
                      .++.+|...|++++|++.+.+..+....... +       ....... ..    ...... ....|    +++.++..+|
T Consensus       192 ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~-~~~~p~~~~~~~~l~~~~a  270 (409)
T TIGR00540       192 LAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNW-WKNQPRHRRHNIALKIALA  270 (409)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH-HHHCCHHHhCCHHHHHHHH
Confidence            7788888888888888888877765211100 0       0000000 00    000000 11123    4666777777


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCcHH-H--HHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhC
Q 009850          184 WALMQQNNYIEAEDAYRRALSIAPDNNK-M--CNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQML  260 (524)
Q Consensus       184 ~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~--~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~  260 (524)
                      ..+...|++++|+..++++++..|++.. .  ..........++..+++.                     .++++++..
T Consensus       271 ~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~---------------------~~e~~lk~~  329 (409)
T TIGR00540       271 EHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEK---------------------LIEKQAKNV  329 (409)
T ss_pred             HHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHH---------------------HHHHHHHhC
Confidence            7777777777777777777777776654 1  112222233344444444                     444788888


Q ss_pred             CCCH--HHHHHHHHHHHHcCCHHHHHHHHh--hcccCCCCCCC
Q 009850          261 KDLE--SEMMNKGGDRVEQSRLFDAFLGSS--SIWQPQPCKDH  299 (524)
Q Consensus       261 p~~~--~a~~~lg~~~~~~g~~~eAi~~~~--~al~~~P~~~~  299 (524)
                      |+++  ..+..+|+++...|++++|...|+  .+++..|+...
T Consensus       330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~  372 (409)
T TIGR00540       330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND  372 (409)
T ss_pred             CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH
Confidence            8888  778888888888888888888888  57777776554

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.59  E-value=2.1e-13  Score=131.80  Aligned_cols=174  Identities=16%  Similarity=0.069  Sum_probs=147.4

Q ss_pred             cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhh
Q 009850           75 AGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQ-ESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFN  153 (524)
Q Consensus        75 ~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~-~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~  153 (524)
                      .++..+..++.+|..+...|++++|+..|++++..+|+++. ...++.+|.+|...|++++|+..|+++++.        
T Consensus        28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--------   99 (235)
T TIGR03302        28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--------   99 (235)
T ss_pred             cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--------
Confidence            34567889999999999999999999999999999998753 347788999999999999999999999998        


Q ss_pred             cccHHHHHHHhHHHHHhcCCCcH---HHHHHHHHHHHHc--------CCHHHHHHHHHHHHhhCCCcHH-H---------
Q 009850          154 GKRTKTARSQGKKFQVSVEQEAT---RLLGNLGWALMQQ--------NNYIEAEDAYRRALSIAPDNNK-M---------  212 (524)
Q Consensus       154 ~~~~~~a~~~~~~~~~~~~p~~~---~a~~~Lg~~~~~~--------g~~~eAi~~~~~Al~l~P~~~~-~---------  212 (524)
                                        .|+++   .+++.+|.++...        |++++|+..|++++..+|++.. +         
T Consensus       100 ------------------~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~  161 (235)
T TIGR03302       100 ------------------HPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYL  161 (235)
T ss_pred             ------------------CcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHH
Confidence                              66654   4799999999987        8999999999999999999854 1         


Q ss_pred             --------HHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHH
Q 009850          213 --------CNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLK---DLESEMMNKGGDRVEQSRLF  281 (524)
Q Consensus       213 --------~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p---~~~~a~~~lg~~~~~~g~~~  281 (524)
                              ..+|.++...|++.+|+..|+                     +++...|   ..+.+++.+|.++...|+++
T Consensus       162 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~---------------------~al~~~p~~~~~~~a~~~l~~~~~~lg~~~  220 (235)
T TIGR03302       162 RNRLAGKELYVARFYLKRGAYVAAINRFE---------------------TVVENYPDTPATEEALARLVEAYLKLGLKD  220 (235)
T ss_pred             HHHHHHHHHHHHHHHHHcCChHHHHHHHH---------------------HHHHHCCCCcchHHHHHHHHHHHHHcCCHH
Confidence                    256777888888888888888                     5555544   45689999999999999999


Q ss_pred             HHHHHHhhcccCCC
Q 009850          282 DAFLGSSSIWQPQP  295 (524)
Q Consensus       282 eAi~~~~~al~~~P  295 (524)
                      +|+..++.+....|
T Consensus       221 ~A~~~~~~l~~~~~  234 (235)
T TIGR03302       221 LAQDAAAVLGANYP  234 (235)
T ss_pred             HHHHHHHHHHhhCC
Confidence            99998877655443

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.57  E-value=5.4e-14  Score=139.40  Aligned_cols=245  Identities=12%  Similarity=0.016  Sum_probs=205.7

Q ss_pred             hhhhhHHHHhcCCC--ChHHHHHHHHHHHHc--CChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009850           31 TRSDSFHAIHKVPV--GDTPYVRAKNVQLVD--KDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSL  106 (524)
Q Consensus        31 ~~~~~~~~~~~~p~--~~~~~~~lg~~~~~~--g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~a  106 (524)
                      .+.+.+++......  ...+-.+|...++.+  .++..|-.+...++.++..++.++.+.|.+-+..|++++|.+.|+.+
T Consensus       437 ~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykea  516 (840)
T KOG2003|consen  437 GAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEA  516 (840)
T ss_pred             HHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHH
Confidence            35555666654422  223445566666663  47899999999999999999999999999999999999999999999


Q ss_pred             HHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHH
Q 009850          107 RSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWAL  186 (524)
Q Consensus       107 l~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~  186 (524)
                      +..+....  .+.+.+|..+..+|+.++|+.+|-+.-.+                          --+++.+++.++.+|
T Consensus       517 l~ndasc~--ealfniglt~e~~~~ldeald~f~klh~i--------------------------l~nn~evl~qianiy  568 (840)
T KOG2003|consen  517 LNNDASCT--EALFNIGLTAEALGNLDEALDCFLKLHAI--------------------------LLNNAEVLVQIANIY  568 (840)
T ss_pred             HcCchHHH--HHHHHhcccHHHhcCHHHHHHHHHHHHHH--------------------------HHhhHHHHHHHHHHH
Confidence            88776554  66778899999999999999999877655                          346788999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCC-------------cCHHHHHHH
Q 009850          187 MQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGP-------------RGVDSHLKA  252 (524)
Q Consensus       187 ~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~-------------~~~~~A~~~  252 (524)
                      ..+.+..+|+++|.++..+-|+++. +..||..|-+.|+..+|..++-.....+|.+.             ...+.++..
T Consensus       569 e~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y  648 (840)
T KOG2003|consen  569 ELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINY  648 (840)
T ss_pred             HHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHH
Confidence            9999999999999999999999999 88999999999999999998877655555543             456778999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCcccc
Q 009850          253 YERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPT  303 (524)
Q Consensus       253 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~l~~  303 (524)
                      |+++.-+.|+.......++.|+.+.|+|..|+..|+..-+.-|.+..++.-
T Consensus       649 ~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkf  699 (840)
T KOG2003|consen  649 FEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKF  699 (840)
T ss_pred             HHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHH
Confidence            999999999999988999999999999999999999999999999886633

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.57  E-value=1.7e-13  Score=139.31  Aligned_cols=247  Identities=15%  Similarity=0.066  Sum_probs=157.6

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHc
Q 009850           50 VRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRC  129 (524)
Q Consensus        50 ~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~  129 (524)
                      ..-|+..+..|+|+.|+.+|..+|.++|.+.-.|.+...+|..+|+|++|++.-.+.++++|+.+  ..|..+|..+..+
T Consensus         6 k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~--kgy~r~Gaa~~~l   83 (539)
T KOG0548|consen    6 KEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWA--KGYSRKGAALFGL   83 (539)
T ss_pred             HHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchh--hHHHHhHHHHHhc
Confidence            34566777777777777777777777777777777777777777777777777777777777776  6667777777777


Q ss_pred             CChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhH--------------------------------------------
Q 009850          130 GRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGK--------------------------------------------  165 (524)
Q Consensus       130 g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~--------------------------------------------  165 (524)
                      |+|++|+..|.+.|+.++.+-.+..++.++......                                            
T Consensus        84 g~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~  163 (539)
T KOG0548|consen   84 GDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLK  163 (539)
T ss_pred             ccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhh
Confidence            777777777777777664443333222211100000                                            


Q ss_pred             ----------HHH-------------------HhcCC------------C---------cHHHHHHHHHHHHHcCCHHHH
Q 009850          166 ----------KFQ-------------------VSVEQ------------E---------ATRLLGNLGWALMQQNNYIEA  195 (524)
Q Consensus       166 ----------~~~-------------------~~~~p------------~---------~~~a~~~Lg~~~~~~g~~~eA  195 (524)
                                ...                   ...+|            +         -....-.+|+..++..++..|
T Consensus       164 ~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a  243 (539)
T KOG0548|consen  164 LYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETA  243 (539)
T ss_pred             cccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHH
Confidence                      000                   00011            0         113456678888888888888


Q ss_pred             HHHHHHHHhhCCCcHH-HHHH-----------------------------------------HHHHHHcCCHHHHHHHHH
Q 009850          196 EDAYRRALSIAPDNNK-MCNL-----------------------------------------GICLMKQGRIGEAKETLR  233 (524)
Q Consensus       196 i~~~~~Al~l~P~~~~-~~~L-----------------------------------------g~~~~~~G~~~eA~~~~~  233 (524)
                      +.+|..++.++ .+.. +.+.                                         |..|.+.++++.|+.+|+
T Consensus       244 ~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~  322 (539)
T KOG0548|consen  244 IQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQ  322 (539)
T ss_pred             HHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHH
Confidence            88888888877 4422 3333                                         334555566666666666


Q ss_pred             HhcccccCC--C-------------------------------------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 009850          234 RVKPAVADG--P-------------------------------------RGVDSHLKAYERAQQMLKDLESEMMNKGGDR  274 (524)
Q Consensus       234 ~a~~~~~~~--~-------------------------------------~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~  274 (524)
                      +++..+...  .                                     +++..|++.|.+++..+|+++..|.|+|.+|
T Consensus       323 kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~  402 (539)
T KOG0548|consen  323 KALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACY  402 (539)
T ss_pred             HHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence            654333221  0                                     4556667777777777777777777777777


Q ss_pred             HHcCCHHHHHHHHhhcccCCCCCCC
Q 009850          275 VEQSRLFDAFLGSSSIWQPQPCKDH  299 (524)
Q Consensus       275 ~~~g~~~eAi~~~~~al~~~P~~~~  299 (524)
                      ..+|.+..|+.+.+.+++++|....
T Consensus       403 ~kL~~~~~aL~Da~~~ieL~p~~~k  427 (539)
T KOG0548|consen  403 LKLGEYPEALKDAKKCIELDPNFIK  427 (539)
T ss_pred             HHHhhHHHHHHHHHHHHhcCchHHH
Confidence            7777777777777777777666554

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.57  E-value=7.9e-14  Score=124.14  Aligned_cols=126  Identities=17%  Similarity=0.125  Sum_probs=116.3

Q ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHH
Q 009850          100 IEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLL  179 (524)
Q Consensus       100 i~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~  179 (524)
                      ..+|+++++++|++.     ..+|.++...|++++|+..|++++.+                          +|.+..+|
T Consensus        13 ~~~~~~al~~~p~~~-----~~~g~~~~~~g~~~~A~~~~~~al~~--------------------------~P~~~~a~   61 (144)
T PRK15359         13 EDILKQLLSVDPETV-----YASGYASWQEGDYSRAVIDFSWLVMA--------------------------QPWSWRAH   61 (144)
T ss_pred             HHHHHHHHHcCHHHH-----HHHHHHHHHcCCHHHHHHHHHHHHHc--------------------------CCCcHHHH
Confidence            468899999999763     35688889999999999999999998                          99999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHH
Q 009850          180 GNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQ  258 (524)
Q Consensus       180 ~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~  258 (524)
                      +++|.++...|++++|+..|++++.++|+++. ++++|.++..+|++++|+..|+                     +++.
T Consensus        62 ~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~---------------------~Al~  120 (144)
T PRK15359         62 IALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQ---------------------TAIK  120 (144)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHH---------------------HHHH
Confidence            99999999999999999999999999999999 9999999999999999999999                     8899


Q ss_pred             hCCCCHHHHHHHHHHHHHc
Q 009850          259 MLKDLESEMMNKGGDRVEQ  277 (524)
Q Consensus       259 ~~p~~~~a~~~lg~~~~~~  277 (524)
                      ..|+++..+.++|.+...+
T Consensus       121 ~~p~~~~~~~~~~~~~~~l  139 (144)
T PRK15359        121 MSYADASWSEIRQNAQIMV  139 (144)
T ss_pred             hCCCChHHHHHHHHHHHHH
Confidence            9999999999998876554

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.56  E-value=7e-13  Score=142.63  Aligned_cols=254  Identities=16%  Similarity=0.116  Sum_probs=117.3

Q ss_pred             CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 009850           42 VPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAG---DRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESL  118 (524)
Q Consensus        42 ~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~---p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l  118 (524)
                      .+.+|.+...|+..++..|+|..+..+...++...   +--.+.++.+|.+|..+|+|++|..+|.++++.++++. ...
T Consensus       266 n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~-~l~  344 (1018)
T KOG2002|consen  266 NNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNF-VLP  344 (1018)
T ss_pred             cCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCc-ccc
Confidence            34455555555555555566665555555555543   22234455555666666666666666655555555541 122


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHhhccHh--------hhcc------cHHHHHHHhHHHHHhcCCCcHHHHHHHHH
Q 009850          119 DNILLDLYKRCGRLDDQIALLKHKLYLIQQGLA--------FNGK------RTKTARSQGKKFQVSVEQEATRLLGNLGW  184 (524)
Q Consensus       119 ~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~--------~~~~------~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~  184 (524)
                      ++-+|++|...|+++.|..+|++++...+....        +.+.      +..+....++.  ....|.+..+|..++.
T Consensus       345 ~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~--~~~~~~d~~a~l~laq  422 (1018)
T KOG2002|consen  345 LVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKV--LEQTPVDSEAWLELAQ  422 (1018)
T ss_pred             ccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHH--HhcccccHHHHHHHHH
Confidence            344555555555555555555555554432221        0000      00000111111  1113455555555555


Q ss_pred             HHHHcCCHHHHHHHHHHHHhh-----CCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhccc-----ccCC-----------
Q 009850          185 ALMQQNNYIEAEDAYRRALSI-----APDNNK-MCNLGICLMKQGRIGEAKETLRRVKPA-----VADG-----------  242 (524)
Q Consensus       185 ~~~~~g~~~eAi~~~~~Al~l-----~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~-----~~~~-----------  242 (524)
                      +|....-| .++.+|..|+.+     .+--+. ++|+|..++..|++.+|...|..++..     +.+.           
T Consensus       423 l~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YN  501 (1018)
T KOG2002|consen  423 LLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYN  501 (1018)
T ss_pred             HHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHH
Confidence            54432222 225555555421     111112 445555555555555555555554322     1111           


Q ss_pred             -------CcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCC
Q 009850          243 -------PRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  299 (524)
Q Consensus       243 -------~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~  299 (524)
                             .++...|-+.|...+...|.+..++..+|......+...+|...+..++..+..++.
T Consensus       502 larl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~  565 (1018)
T KOG2002|consen  502 LARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPN  565 (1018)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcH
Confidence                   022233345555555555555555555554444455555555555555555544444

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.55  E-value=4.4e-12  Score=132.34  Aligned_cols=242  Identities=10%  Similarity=-0.003  Sum_probs=190.3

Q ss_pred             hHHHHHH-HHHHHHcCChHHHHHHHHHHHHcCCCcHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 009850           46 DTPYVRA-KNVQLVDKDPEKAIPLFWAAINAGDRVDSAL-KDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILL  123 (524)
Q Consensus        46 ~~~~~~l-g~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~-~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg  123 (524)
                      +..++.+ +......|+++.|..+|.++.+.+|++..+. ...+.++...|++++|+..++++.+..|+++  .+...++
T Consensus       117 p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~--~al~ll~  194 (398)
T PRK10747        117 PVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHP--EVLRLAE  194 (398)
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH--HHHHHHH
Confidence            4455555 5566999999999999999999999986444 3458999999999999999999999999998  6778889


Q ss_pred             HHHHHcCChHHHHHHHHHHHHHhhccHhhhc-----------------ccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHH
Q 009850          124 DLYKRCGRLDDQIALLKHKLYLIQQGLAFNG-----------------KRTKTARSQGKKFQVSVEQEATRLLGNLGWAL  186 (524)
Q Consensus       124 ~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~-----------------~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~  186 (524)
                      .+|...|++++|+..+.+..+..........                 ...+.....-+.. ....|+++.++..++..+
T Consensus       195 ~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~l-p~~~~~~~~~~~~~A~~l  273 (398)
T PRK10747        195 QAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQ-SRKTRHQVALQVAMAEHL  273 (398)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhC-CHHHhCCHHHHHHHHHHH
Confidence            9999999999999999888765422111000                 0000011100000 122477899999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCC-------------cCHHHHHHH
Q 009850          187 MQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGP-------------RGVDSHLKA  252 (524)
Q Consensus       187 ~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~-------------~~~~~A~~~  252 (524)
                      ...|+.++|...++++++. |.++. ....+.+  ..++.++++..+++..+.+|+++             +.+++|...
T Consensus       274 ~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~  350 (398)
T PRK10747        274 IECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLA  350 (398)
T ss_pred             HHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            9999999999999999994 44444 4334443  45999999999999998888886             788999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCC
Q 009850          253 YERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQ  294 (524)
Q Consensus       253 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~  294 (524)
                      |+++++..|+... +..++.++..+|+.++|..+|++++.+.
T Consensus       351 le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~~~l~~~  391 (398)
T PRK10747        351 FRAALKQRPDAYD-YAWLADALDRLHKPEEAAAMRRDGLMLT  391 (398)
T ss_pred             HHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            9999999998754 6689999999999999999999997653

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.53  E-value=1.3e-12  Score=134.25  Aligned_cols=212  Identities=17%  Similarity=0.065  Sum_probs=168.0

Q ss_pred             CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 009850           42 VPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDR---VDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESL  118 (524)
Q Consensus        42 ~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~---~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l  118 (524)
                      .|....+|..+|..+...|+++.|...+.++....+.   ..+..+..|.++...|++++|...+++++..+|++.  ..
T Consensus         2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~--~a   79 (355)
T cd05804           2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDL--LA   79 (355)
T ss_pred             CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH--HH
Confidence            4677888999999999999999999999999887664   456678889999999999999999999999999886  33


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 009850          119 DNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDA  198 (524)
Q Consensus       119 ~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~  198 (524)
                      +.. +..+...|++..+.....+++...                      ...+|....++..+|.++...|++++|+..
T Consensus        80 ~~~-~~~~~~~~~~~~~~~~~~~~l~~~----------------------~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~  136 (355)
T cd05804          80 LKL-HLGAFGLGDFSGMRDHVARVLPLW----------------------APENPDYWYLLGMLAFGLEEAGQYDRAEEA  136 (355)
T ss_pred             HHH-hHHHHHhcccccCchhHHHHHhcc----------------------CcCCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence            332 444445555544444444444320                      111677788889999999999999999999


Q ss_pred             HHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH
Q 009850          199 YRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDL-ESEMMNKGGDRVE  276 (524)
Q Consensus       199 ~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~-~~a~~~lg~~~~~  276 (524)
                      ++++++++|++.. +..+|.++...|++++|+.+++++++..+..                  +.. ...++.+|.++..
T Consensus       137 ~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~------------------~~~~~~~~~~la~~~~~  198 (355)
T cd05804         137 ARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCS------------------SMLRGHNWWHLALFYLE  198 (355)
T ss_pred             HHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCC------------------cchhHHHHHHHHHHHHH
Confidence            9999999999988 8999999999999999999999654433210                  111 2357789999999


Q ss_pred             cCCHHHHHHHHhhcccCCCC
Q 009850          277 QSRLFDAFLGSSSIWQPQPC  296 (524)
Q Consensus       277 ~g~~~eAi~~~~~al~~~P~  296 (524)
                      +|++++|+..|+.++...|.
T Consensus       199 ~G~~~~A~~~~~~~~~~~~~  218 (355)
T cd05804         199 RGDYEAALAIYDTHIAPSAE  218 (355)
T ss_pred             CCCHHHHHHHHHHHhccccC
Confidence            99999999999998766653

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.53  E-value=1.6e-12  Score=137.01  Aligned_cols=260  Identities=16%  Similarity=0.070  Sum_probs=193.4

Q ss_pred             HHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Q 009850           38 AIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINA-GDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQE  116 (524)
Q Consensus        38 ~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~-~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~  116 (524)
                      ++...|.++.+.|.++..|..+++.+.|..+.+++++. ..++..+|+.|+.++-..+++.+|+.....++.-.|++.  
T Consensus       470 av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~--  547 (799)
T KOG4162|consen  470 AVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNH--  547 (799)
T ss_pred             HHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhh--
Confidence            44556888888999999999999999999999999999 567888999999999999999999999999999888763  


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHhh----------ccHhh--------hc-c------cHHHH----HHHhHHH
Q 009850          117 SLDNILLDLYKRCGRLDDQIALLKHKLYLIQ----------QGLAF--------NG-K------RTKTA----RSQGKKF  167 (524)
Q Consensus       117 ~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~----------~~~~~--------~~-~------~~~~a----~~~~~~~  167 (524)
                      .+......+-...++.++|+....+.+.+..          .+...        .. .      ....+    ....+.+
T Consensus       548 ~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~  627 (799)
T KOG4162|consen  548 VLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSA  627 (799)
T ss_pred             hhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhc
Confidence            2223333344457888888888777776642          11110        00 0      00000    0000000


Q ss_pred             H---------HhcCCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHH
Q 009850          168 Q---------VSVEQEA-----TRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETL  232 (524)
Q Consensus       168 ~---------~~~~p~~-----~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~  232 (524)
                      .         ..-.|+.     ...|...+..+...+.-++|..++.++-.++|..+. |+..|.++...|++.+|...|
T Consensus       628 ~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af  707 (799)
T KOG4162|consen  628 GSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAF  707 (799)
T ss_pred             ccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHH
Confidence            0         0112222     245667778888888888888888888888888888 888888888888888888888


Q ss_pred             HHhcccccCCC-------------cC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCC
Q 009850          233 RRVKPAVADGP-------------RG--VDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCK  297 (524)
Q Consensus       233 ~~a~~~~~~~~-------------~~--~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~  297 (524)
                      ..++..+|++.             |.  ..++.-.+..+++++|.+.++|+.+|.++..+|+.++|..||..++++++.+
T Consensus       708 ~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~  787 (799)
T KOG4162|consen  708 LVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESN  787 (799)
T ss_pred             HHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCC
Confidence            88887777775             22  2233337889999999999999999999999999999999999999999887


Q ss_pred             CC
Q 009850          298 DH  299 (524)
Q Consensus       298 ~~  299 (524)
                      +-
T Consensus       788 PV  789 (799)
T KOG4162|consen  788 PV  789 (799)
T ss_pred             Cc
Confidence            65

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.52  E-value=5e-13  Score=125.39  Aligned_cols=123  Identities=16%  Similarity=0.175  Sum_probs=79.2

Q ss_pred             cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcC
Q 009850           93 QNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVE  172 (524)
Q Consensus        93 ~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~  172 (524)
                      .++.++++..++++++.+|++.  ..|..+|.+|...|++++|+..|++++++                          +
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~--~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--------------------------~  103 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNS--EQWALLGEYYLWRNDYDNALLAYRQALQL--------------------------R  103 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------------------------C
Confidence            4555666666666666666665  56666666666666666666666666666                          6


Q ss_pred             CCcHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCC
Q 009850          173 QEATRLLGNLGWAL-MQQNN--YIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGP  243 (524)
Q Consensus       173 p~~~~a~~~Lg~~~-~~~g~--~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~  243 (524)
                      |+++.++.++|.++ ...|+  +++|...++++++.+|++.. ++++|.++.+.|++++|+.+|++++...+...
T Consensus       104 P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~  178 (198)
T PRK10370        104 GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRV  178 (198)
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence            66666666666653 45555  36666666666666666666 66666666666666666666666655555544

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.51  E-value=1.9e-13  Score=134.77  Aligned_cols=246  Identities=15%  Similarity=0.058  Sum_probs=194.3

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 009850           48 PYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYK  127 (524)
Q Consensus        48 ~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~  127 (524)
                      -....|..++...+|..|+..|..|+...|+++..|.+.+.+++..|+|++|.-..++.++++|...  ......+.++.
T Consensus        51 ~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~--k~~~r~~~c~~  128 (486)
T KOG0550|consen   51 EAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFS--KGQLREGQCHL  128 (486)
T ss_pred             HHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCcc--ccccchhhhhh
Confidence            3566788889999999999999999999999999999999999999999999999999999999876  34456667777


Q ss_pred             HcCChHHHHHHHHHHHH---------HhhccH-------hhh-----------cccHHHHHHHhHHHHHhcCCCcHHHHH
Q 009850          128 RCGRLDDQIALLKHKLY---------LIQQGL-------AFN-----------GKRTKTARSQGKKFQVSVEQEATRLLG  180 (524)
Q Consensus       128 ~~g~~~eA~~~~~~al~---------l~~~~~-------~~~-----------~~~~~~a~~~~~~~~~~~~p~~~~a~~  180 (524)
                      ..+...+|.+.|+..-.         +.+...       ++.           .+....+.+. ......+++.+..+++
T Consensus       129 a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~e-a~~ilkld~~n~~al~  207 (486)
T KOG0550|consen  129 ALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSE-AIDILKLDATNAEALY  207 (486)
T ss_pred             hhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHH-HHHHHhcccchhHHHH
Confidence            77777777665552210         000000       000           0011111110 0112455888899999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-------------HHHHHHHHHHcCCHHHHHHHHHHhcccccCCC----
Q 009850          181 NLGWALMQQNNYIEAEDAYRRALSIAPDNNK-------------MCNLGICLMKQGRIGEAKETLRRVKPAVADGP----  243 (524)
Q Consensus       181 ~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-------------~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~----  243 (524)
                      ..|.++...++.+.|+.+|+++|.++|++..             |-..|.-.++.|++..|.++|..++..+|.+.    
T Consensus       208 vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~na  287 (486)
T KOG0550|consen  208 VRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNA  287 (486)
T ss_pred             hcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhH
Confidence            9999999999999999999999999998722             56678888899999999999999988887763    


Q ss_pred             -------------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCC
Q 009850          244 -------------RGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPC  296 (524)
Q Consensus       244 -------------~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~  296 (524)
                                   ++..+|+.....++.+++....++...|.++..+++|++|++.|+++.+....
T Consensus       288 klY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s  353 (486)
T KOG0550|consen  288 KLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD  353 (486)
T ss_pred             HHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence                         77788999999999999999999999999999999999999999999988665

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.51  E-value=6.2e-12  Score=140.31  Aligned_cols=285  Identities=9%  Similarity=-0.014  Sum_probs=206.5

Q ss_pred             chhhhhhhHHHHhcCCCChHHHHHH--HHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 009850           28 VSRTRSDSFHAIHKVPVGDTPYVRA--KNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKS  105 (524)
Q Consensus        28 ~l~~~~~~~~~~~~~p~~~~~~~~l--g~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~  105 (524)
                      ....+...+.... .|.....+..+  |.++...|++++|++.|+++++.+|+++.++..++.++...++.++|+..+++
T Consensus        83 ~~~~A~~~~eka~-~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~  161 (822)
T PRK14574         83 RDQEVIDVYERYQ-SSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATE  161 (822)
T ss_pred             CcHHHHHHHHHhc-cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHH
Confidence            4444444444443 33333344444  77999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhh--------------------c-----------
Q 009850          106 LRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFN--------------------G-----------  154 (524)
Q Consensus       106 al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~--------------------~-----------  154 (524)
                      +...+|...   .+..++.++...++..+|+..|+++++..+....+.                    .           
T Consensus       162 l~~~dp~~~---~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~  238 (822)
T PRK14574        162 LAERDPTVQ---NYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHY  238 (822)
T ss_pred             hcccCcchH---HHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHH
Confidence            999999864   225556666667888779999999987751111000                    0           


Q ss_pred             -----------------------ccH---HHHHHHhHH-----------------------------------------H
Q 009850          155 -----------------------KRT---KTARSQGKK-----------------------------------------F  167 (524)
Q Consensus       155 -----------------------~~~---~~a~~~~~~-----------------------------------------~  167 (524)
                                             .++   +.+......                                         +
T Consensus       239 ~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l  318 (822)
T PRK14574        239 RQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAM  318 (822)
T ss_pred             HHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence                                   000   000000000                                         0


Q ss_pred             HHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------cHH-HHHHHHHHHHcCCHHHHHHHHHHhccccc
Q 009850          168 QVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPD------NNK-MCNLGICLMKQGRIGEAKETLRRVKPAVA  240 (524)
Q Consensus       168 ~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~------~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~  240 (524)
                      .....|-...+....|..|+..++.++|+..|++++.-.|.      ... ...|..+|...+++++|..++++.....|
T Consensus       319 ~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p  398 (822)
T PRK14574        319 EAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTP  398 (822)
T ss_pred             hhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC
Confidence            00011223456677788999999999999999999886532      222 46788899999999999999999865444


Q ss_pred             C----------CC------------------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhccc
Q 009850          241 D----------GP------------------RGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQ  292 (524)
Q Consensus       241 ~----------~~------------------~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~  292 (524)
                      -          .+                  +++.+|.+.+++.+...|.+...+..+|.++..+|++.+|...++.+..
T Consensus       399 ~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~  478 (822)
T PRK14574        399 YQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVES  478 (822)
T ss_pred             cEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence            1          00                  6788899999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCccccccccccccccccccc
Q 009850          293 PQPCKDHILPTTNAIKTRDDFADENI  318 (524)
Q Consensus       293 ~~P~~~~~l~~~~l~~~~q~lgd~~~  318 (524)
                      .+|.+..+..  ...++...+++..+
T Consensus       479 l~P~~~~~~~--~~~~~al~l~e~~~  502 (822)
T PRK14574        479 LAPRSLILER--AQAETAMALQEWHQ  502 (822)
T ss_pred             hCCccHHHHH--HHHHHHHhhhhHHH
Confidence            9999877542  24444444444443

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.51  E-value=1.9e-12  Score=121.53  Aligned_cols=125  Identities=16%  Similarity=0.210  Sum_probs=117.3

Q ss_pred             cCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HHHcCC--hHHH
Q 009850           59 DKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDL-YKRCGR--LDDQ  135 (524)
Q Consensus        59 ~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~-~~~~g~--~~eA  135 (524)
                      .++.++++..++++++.+|++.++|..+|.+|...|++++|+..|++++++.|+++  .++..+|.+ +...|+  +++|
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~--~~~~~lA~aL~~~~g~~~~~~A  129 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENA--ELYAALATVLYYQAGQHMTPQT  129 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHhcCCCCcHHH
Confidence            56779999999999999999999999999999999999999999999999999998  777888986 477787  5999


Q ss_pred             HHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q 009850          136 IALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK  211 (524)
Q Consensus       136 ~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~  211 (524)
                      ...++++++.                          +|+++.+++++|.+++..|+|++|+.+|++++++.|.+..
T Consensus       130 ~~~l~~al~~--------------------------dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~  179 (198)
T PRK10370        130 REMIDKALAL--------------------------DANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN  179 (198)
T ss_pred             HHHHHHHHHh--------------------------CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence            9999999999                          9999999999999999999999999999999999988766

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.49  E-value=5e-12  Score=141.06  Aligned_cols=202  Identities=12%  Similarity=0.029  Sum_probs=172.1

Q ss_pred             HHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 009850           38 AIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQES  117 (524)
Q Consensus        38 ~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~  117 (524)
                      .....|..+...+..+.+.++.|+++.|+..|+++++.+|.++.+...+..++...|+.++|+.++++++  +|.+....
T Consensus        26 ~~~~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~--~p~n~~~~  103 (822)
T PRK14574         26 GFVVNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ--SSMNISSR  103 (822)
T ss_pred             ccccCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc--cCCCCCHH
Confidence            3344577788899999999999999999999999999999997555599999999999999999999999  55444335


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 009850          118 LDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAED  197 (524)
Q Consensus       118 l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~  197 (524)
                      ....+|.+|...|++++|++.|+++++.                          +|+++.++..++.++...+++++|+.
T Consensus       104 ~llalA~ly~~~gdyd~Aiely~kaL~~--------------------------dP~n~~~l~gLa~~y~~~~q~~eAl~  157 (822)
T PRK14574        104 GLASAARAYRNEKRWDQALALWQSSLKK--------------------------DPTNPDLISGMIMTQADAGRGGVVLK  157 (822)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhh--------------------------CCCCHHHHHHHHHHHhhcCCHHHHHH
Confidence            5566688999999999999999999999                          99999999999999999999999999


Q ss_pred             HHHHHHhhCCCcHHHHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 009850          198 AYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQ  277 (524)
Q Consensus       198 ~~~~Al~l~P~~~~~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~  277 (524)
                      .+++++..+|.+..+..++.++...++..+|+..|+                     ++++..|++..++..+..++...
T Consensus       158 ~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~e---------------------kll~~~P~n~e~~~~~~~~l~~~  216 (822)
T PRK14574        158 QATELAERDPTVQNYMTLSYLNRATDRNYDALQASS---------------------EAVRLAPTSEEVLKNHLEILQRN  216 (822)
T ss_pred             HHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHH---------------------HHHHhCCCCHHHHHHHHHHHHHc
Confidence            999999999996556555666666777777888888                     77888888888888888888888


Q ss_pred             CCHHHHHHHHh
Q 009850          278 SRLFDAFLGSS  288 (524)
Q Consensus       278 g~~~eAi~~~~  288 (524)
                      |-..-|.....
T Consensus       217 ~~~~~a~~l~~  227 (822)
T PRK14574        217 RIVEPALRLAK  227 (822)
T ss_pred             CCcHHHHHHHH
Confidence            88777776544

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.48  E-value=1.3e-11  Score=127.75  Aligned_cols=261  Identities=10%  Similarity=0.016  Sum_probs=167.9

Q ss_pred             HHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 009850           38 AIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQES  117 (524)
Q Consensus        38 ~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~  117 (524)
                      ++...|..+..|...+..+...||...|..++..+++.+|++.+.|+.-..+.....+++.|..+|.++....|..   .
T Consensus       576 av~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTe---R  652 (913)
T KOG0495|consen  576 AVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTE---R  652 (913)
T ss_pred             HHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcc---h
Confidence            4455677777777777777777888888888888888888877777776667777777777777777776666655   4


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhh---cccHHHHHHH---hHHHH--HhcCCCcHHHHHHHHHHHHHc
Q 009850          118 LDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFN---GKRTKTARSQ---GKKFQ--VSVEQEATRLLGNLGWALMQQ  189 (524)
Q Consensus       118 l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~---~~~~~~a~~~---~~~~~--~~~~p~~~~a~~~Lg~~~~~~  189 (524)
                      +|.-.+.+...+++.++|+.+++++++.++.-.-+.   +..++.....   ...+.  ...-|+....|..|+.+-.+.
T Consensus       653 v~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~  732 (913)
T KOG0495|consen  653 VWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKD  732 (913)
T ss_pred             hhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHh
Confidence            555555666666777777777777776632211111   0000000000   00111  111466666666666666666


Q ss_pred             CCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHH---------HHHHHHHh
Q 009850          190 NNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLK---------AYERAQQM  259 (524)
Q Consensus       190 g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~---------~~~~al~~  259 (524)
                      |..-.|...+.++.-.+|++.. |...-..-.+.|+.+.|...+.+|+...|...--+.+++.         .+..|+..
T Consensus       733 ~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkk  812 (913)
T KOG0495|consen  733 GQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKK  812 (913)
T ss_pred             cchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHh
Confidence            6666666666666666666666 6555566666666666666666666666555433333332         23345555


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCcc
Q 009850          260 LKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL  301 (524)
Q Consensus       260 ~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~l  301 (524)
                      ...++.++...|..+....+++.|...|.++++.+|+++..-
T Consensus       813 ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~w  854 (913)
T KOG0495|consen  813 CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAW  854 (913)
T ss_pred             ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHH
Confidence            666777888899999999999999999999999999998844

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.48  E-value=5.2e-12  Score=118.68  Aligned_cols=178  Identities=20%  Similarity=0.153  Sum_probs=152.7

Q ss_pred             ChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 009850           61 DPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLK  140 (524)
Q Consensus        61 ~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~  140 (524)
                      +...+...+-+....+|++..+ ..++..+...|+-+.+..+..++...+|.+.  .+...+|....+.|++.+|+..++
T Consensus        48 q~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~--~ll~~~gk~~~~~g~~~~A~~~~r  124 (257)
T COG5010          48 QTQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDR--ELLAAQGKNQIRNGNFGEAVSVLR  124 (257)
T ss_pred             hhhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccH--HHHHHHHHHHHHhcchHHHHHHHH
Confidence            3344666777777788998888 8899999999999999999999888888886  555668888889999999999999


Q ss_pred             HHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHH
Q 009850          141 HKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICL  219 (524)
Q Consensus       141 ~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~  219 (524)
                      ++..+                          +|+++.+|+.+|.+|.+.|++++|...|.+++++.|..+. ..|+|..|
T Consensus       125 kA~~l--------------------------~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~  178 (257)
T COG5010         125 KAARL--------------------------APTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSL  178 (257)
T ss_pred             HHhcc--------------------------CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHH
Confidence            99888                          8999999999999999999999999999999999999988 89999999


Q ss_pred             HHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHh
Q 009850          220 MKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSS  288 (524)
Q Consensus       220 ~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~  288 (524)
                      .-.|+++.|..++.                     .+...-+.+..+..|++.+...+|++.+|...-.
T Consensus       179 ~L~gd~~~A~~lll---------------------~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~  226 (257)
T COG5010         179 LLRGDLEDAETLLL---------------------PAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV  226 (257)
T ss_pred             HHcCCHHHHHHHHH---------------------HHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence            99999999999988                     5555666677888999999999999998877643

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.47  E-value=2.6e-12  Score=140.89  Aligned_cols=144  Identities=13%  Similarity=0.052  Sum_probs=109.9

Q ss_pred             hcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 009850           40 HKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLD  119 (524)
Q Consensus        40 ~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~  119 (524)
                      ...+..+++++.||.+....|++++|+.+++.+++..|++..++.+++.++.+++++++|+..+++++..+|+++  ...
T Consensus        80 ~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~--~~~  157 (694)
T PRK15179         80 RRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSA--REI  157 (694)
T ss_pred             HhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCH--HHH
Confidence            345666777777888878888888888888888888888877888888888888888888888888888877776  566


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 009850          120 NILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAY  199 (524)
Q Consensus       120 ~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~  199 (524)
                      +.+|.++.+.|++++|+.+|++++..                          +|+++.++..+|.++...|+.++|...|
T Consensus       158 ~~~a~~l~~~g~~~~A~~~y~~~~~~--------------------------~p~~~~~~~~~a~~l~~~G~~~~A~~~~  211 (694)
T PRK15179        158 LLEAKSWDEIGQSEQADACFERLSRQ--------------------------HPEFENGYVGWAQSLTRRGALWRARDVL  211 (694)
T ss_pred             HHHHHHHHHhcchHHHHHHHHHHHhc--------------------------CCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            77777777778888888888777765                          6777777788888887788888888888


Q ss_pred             HHHHhhCCCcHH
Q 009850          200 RRALSIAPDNNK  211 (524)
Q Consensus       200 ~~Al~l~P~~~~  211 (524)
                      ++|+....+-..
T Consensus       212 ~~a~~~~~~~~~  223 (694)
T PRK15179        212 QAGLDAIGDGAR  223 (694)
T ss_pred             HHHHHhhCcchH
Confidence            887776655444

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.47  E-value=5.6e-12  Score=138.22  Aligned_cols=165  Identities=14%  Similarity=0.139  Sum_probs=143.7

Q ss_pred             HHHHHHHHcCChHHHHHHH---HHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 009850           51 RAKNVQLVDKDPEKAIPLF---WAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYK  127 (524)
Q Consensus        51 ~lg~~~~~~g~~~~Ai~~~---~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~  127 (524)
                      .+-.+.-..|....+...+   .......|++++++++||.+..+.|++++|..+++.++++.|++.  .+...++.++.
T Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~--~a~~~~a~~L~  131 (694)
T PRK15179         54 QARQVLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSS--EAFILMLRGVK  131 (694)
T ss_pred             HHHHHHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcH--HHHHHHHHHHH
Confidence            3344444555544444444   444455789999999999999999999999999999999999997  67788899999


Q ss_pred             HcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 009850          128 RCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAP  207 (524)
Q Consensus       128 ~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P  207 (524)
                      +.+++++|+..+++++..                          +|+++.+++.+|.++.+.|++++|+.+|++++..+|
T Consensus       132 ~~~~~eeA~~~~~~~l~~--------------------------~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p  185 (694)
T PRK15179        132 RQQGIEAGRAEIELYFSG--------------------------GSSSAREILLEAKSWDEIGQSEQADACFERLSRQHP  185 (694)
T ss_pred             HhccHHHHHHHHHHHhhc--------------------------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCC
Confidence            999999999999999998                          999999999999999999999999999999999999


Q ss_pred             CcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCC
Q 009850          208 DNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGP  243 (524)
Q Consensus       208 ~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~  243 (524)
                      ++.. +.++|.++...|+.++|...|+++.....+..
T Consensus       186 ~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~  222 (694)
T PRK15179        186 EFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGA  222 (694)
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcch
Confidence            9888 99999999999999999999998866555443

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.46  E-value=3.1e-11  Score=123.87  Aligned_cols=219  Identities=12%  Similarity=0.002  Sum_probs=158.8

Q ss_pred             ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HhCCCcHHHHHHH
Q 009850           45 GDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLR----SRCSDQAQESLDN  120 (524)
Q Consensus        45 ~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al----~~~p~~~~~~l~~  120 (524)
                      ..+..+..|..+...|++++|+..+++++..+|++..++.. +..+...|++..+.....+++    ..+|...  ....
T Consensus        42 ~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~  118 (355)
T cd05804          42 ERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYW--YLLG  118 (355)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcH--HHHH
Confidence            34556778999999999999999999999999999988775 555555554444444444433    3444444  4556


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 009850          121 ILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYR  200 (524)
Q Consensus       121 ~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~  200 (524)
                      .+|.++...|++++|+..+++++++                          +|+++.++..+|.++...|++++|+.+++
T Consensus       119 ~~a~~~~~~G~~~~A~~~~~~al~~--------------------------~p~~~~~~~~la~i~~~~g~~~eA~~~l~  172 (355)
T cd05804         119 MLAFGLEEAGQYDRAEEAARRALEL--------------------------NPDDAWAVHAVAHVLEMQGRFKEGIAFME  172 (355)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhh--------------------------CCCCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            7888999999999999999999999                          89999999999999999999999999999


Q ss_pred             HHHhhCCCcHH-----HHHHHHHHHHcCCHHHHHHHHHHhcccccCCC--cCH-HH--------------HHHHHHHHHH
Q 009850          201 RALSIAPDNNK-----MCNLGICLMKQGRIGEAKETLRRVKPAVADGP--RGV-DS--------------HLKAYERAQQ  258 (524)
Q Consensus       201 ~Al~l~P~~~~-----~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~--~~~-~~--------------A~~~~~~al~  258 (524)
                      +++...|..+.     |..+|.++..+|++++|+..|+++....+...  ... +.              ....++.+..
T Consensus       173 ~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~  252 (355)
T cd05804         173 SWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLAD  252 (355)
T ss_pred             hhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHH
Confidence            99998874322     56899999999999999999999753333111  100 11              0011111111


Q ss_pred             h----CCC--CHHHHHHHHHHHHHcCCHHHHHHHHhhccc
Q 009850          259 M----LKD--LESEMMNKGGDRVEQSRLFDAFLGSSSIWQ  292 (524)
Q Consensus       259 ~----~p~--~~~a~~~lg~~~~~~g~~~eAi~~~~~al~  292 (524)
                      .    .+.  ........+.++...|+.++|......+..
T Consensus       253 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~  292 (355)
T cd05804         253 YAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKG  292 (355)
T ss_pred             HHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            1    111  122334677888899999988887665543

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>TIGR00540 hemY_coli hemY protein

Probab=99.45  E-value=2.8e-11  Score=126.84  Aligned_cols=242  Identities=11%  Similarity=-0.015  Sum_probs=161.8

Q ss_pred             hhhhhHHHHh-cCCCCh-HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 009850           31 TRSDSFHAIH-KVPVGD-TPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRS  108 (524)
Q Consensus        31 ~~~~~~~~~~-~~p~~~-~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~  108 (524)
                      .+...+.... ..|... ......+.+++..|++++|+..++..++..|+++.++..++.++...|++++|++.+.+..+
T Consensus       136 ~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k  215 (409)
T TIGR00540       136 RANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAK  215 (409)
T ss_pred             HHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            3444444333 344443 34445699999999999999999999999999999999999999999999999999999987


Q ss_pred             hCCCcHH-H-HHHHHHHHHHHHcCChHHHHHHHHHHHHHhhc----cHh---------hhcccHHHHHHHhHHHHHhcCC
Q 009850          109 RCSDQAQ-E-SLDNILLDLYKRCGRLDDQIALLKHKLYLIQQ----GLA---------FNGKRTKTARSQGKKFQVSVEQ  173 (524)
Q Consensus       109 ~~p~~~~-~-~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~----~~~---------~~~~~~~~a~~~~~~~~~~~~p  173 (524)
                      ....++. . .+......-+...+..+++...+.++....+.    ...         ...+..+.+....... +...|
T Consensus       216 ~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~-l~~~p  294 (409)
T TIGR00540       216 AGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDG-LKKLG  294 (409)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHH-HhhCC
Confidence            7443221 0 00001111111222222223333333332211    100         0112222222221111 12267


Q ss_pred             CcHHHH--HHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH--H-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHH
Q 009850          174 EATRLL--GNLGWALMQQNNYIEAEDAYRRALSIAPDNN--K-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDS  248 (524)
Q Consensus       174 ~~~~a~--~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~--~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~  248 (524)
                      ++....  ..........++.++++..++++++..|+++  . +..+|.++.+.|++++|..+|+++             
T Consensus       295 d~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a-------------  361 (409)
T TIGR00540       295 DDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNV-------------  361 (409)
T ss_pred             CcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHh-------------
Confidence            776432  3334444556889999999999999999999  7 779999999999999999999954             


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccC
Q 009850          249 HLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQP  293 (524)
Q Consensus       249 A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~  293 (524)
                            .+++..|+... +..+|.++...|+.++|...|++++..
T Consensus       362 ------~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~  399 (409)
T TIGR00540       362 ------AACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGL  399 (409)
T ss_pred             ------HHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence                  46667777665 559999999999999999999987643

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.42  E-value=7e-12  Score=110.06  Aligned_cols=117  Identities=15%  Similarity=0.064  Sum_probs=107.4

Q ss_pred             HHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Q 009850           67 PLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLI  146 (524)
Q Consensus        67 ~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~  146 (524)
                      ..|++++..+|++..+.+.+|.++...|++++|+..+++++..+|+++  .++..+|.++...|++++|+..|++++.. 
T Consensus         4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~--~~~~~la~~~~~~~~~~~A~~~~~~~~~~-   80 (135)
T TIGR02552         4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNS--RYWLGLAACCQMLKEYEEAIDAYALAAAL-   80 (135)
T ss_pred             hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence            468889999999999999999999999999999999999999999887  77788899999999999999999999888 


Q ss_pred             hccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q 009850          147 QQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK  211 (524)
Q Consensus       147 ~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~  211 (524)
                                               +|.++..++.+|.++...|++++|+..|+++++++|++..
T Consensus        81 -------------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  120 (135)
T TIGR02552        81 -------------------------DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE  120 (135)
T ss_pred             -------------------------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence                                     8999999999999999999999999999999999998876

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.41  E-value=6.8e-11  Score=122.50  Aligned_cols=257  Identities=13%  Similarity=0.039  Sum_probs=196.6

Q ss_pred             HHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 009850           38 AIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQES  117 (524)
Q Consensus        38 ~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~  117 (524)
                      +....|.+.+.|+..-.+.+...+++.|..+|.++....|. ...|+.-+.+...+++.++|+.+++.+++..|+..  .
T Consensus       610 af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgT-eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~--K  686 (913)
T KOG0495|consen  610 AFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGT-ERVWMKSANLERYLDNVEEALRLLEEALKSFPDFH--K  686 (913)
T ss_pred             HHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc-chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchH--H
Confidence            44566778888888888888888888888888888776665 56777778888888888888888888888888876  7


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhc---ccHHH------HHHHhHHHHHhcCCCcHHHHHHHHHHHHH
Q 009850          118 LDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNG---KRTKT------ARSQGKKFQVSVEQEATRLLGNLGWALMQ  188 (524)
Q Consensus       118 l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~---~~~~~------a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~  188 (524)
                      +|..+|+++.+.++.+.|...|...++..+....+.-   +..+.      +...... ....+|++...|...-.+-.+
T Consensus       687 l~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildr-arlkNPk~~~lwle~Ir~ElR  765 (913)
T KOG0495|consen  687 LWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDR-ARLKNPKNALLWLESIRMELR  765 (913)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHH-HHhcCCCcchhHHHHHHHHHH
Confidence            8888888888888888888888888777655544322   11111      1111111 122389999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCC----------CcCHHHHHHHHHHHH
Q 009850          189 QNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADG----------PRGVDSHLKAYERAQ  257 (524)
Q Consensus       189 ~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~----------~~~~~~A~~~~~~al  257 (524)
                      .|+.++|.....+||+-.|.+.. |..--...-+-++-..++..+.+... ++..          ...++.+.+.|.+++
T Consensus       766 ~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~-dphVllaia~lfw~e~k~~kar~Wf~Rav  844 (913)
T KOG0495|consen  766 AGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEH-DPHVLLAIAKLFWSEKKIEKAREWFERAV  844 (913)
T ss_pred             cCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccC-CchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999988 76554444555666666666665411 1111          145678899999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCC
Q 009850          258 QMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  299 (524)
Q Consensus       258 ~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~  299 (524)
                      ..+|++.++|..+-..+...|.-++-...|.+..+..|.++.
T Consensus       845 k~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~  886 (913)
T KOG0495|consen  845 KKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGE  886 (913)
T ss_pred             ccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCc
Confidence            999999999999999999999999999999999888888776

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.41  E-value=1.9e-11  Score=123.73  Aligned_cols=195  Identities=17%  Similarity=0.099  Sum_probs=144.9

Q ss_pred             CCCCCCCCCCCCCCCCCCccchhhhhhhHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHH
Q 009850            8 APPGFRPTKSAPSSPAKPLGVSRTRSDSFHAIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMA   87 (524)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La   87 (524)
                      .+|+|..++|.|.+.+..+....+...+    ......++..+.-........-+......-..+...+|....+++..+
T Consensus       238 ~~p~yl~THPlp~~RIa~lr~ra~q~p~----~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~aa~YG~A  313 (484)
T COG4783         238 QPPEYLLTHPLPEERIADLRNRAEQSPP----YNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKRGGLAAQYGRA  313 (484)
T ss_pred             CCChHHhcCCCchhHHHHHHHHHHhCCC----CCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCccchHHHHHHH
Confidence            4566666777666555444311111111    111223333443333332222222222222222333478889999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHH
Q 009850           88 IVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKF  167 (524)
Q Consensus        88 ~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~  167 (524)
                      ..++..|++++|...++.+++..|+++  .++...++++...++..+|.+.+++++.+                      
T Consensus       314 ~~~~~~~~~d~A~~~l~~L~~~~P~N~--~~~~~~~~i~~~~nk~~~A~e~~~kal~l----------------------  369 (484)
T COG4783         314 LQTYLAGQYDEALKLLQPLIAAQPDNP--YYLELAGDILLEANKAKEAIERLKKALAL----------------------  369 (484)
T ss_pred             HHHHHhcccchHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCChHHHHHHHHHHHhc----------------------
Confidence            999999999999999999999999998  56678899999999999999999999998                      


Q ss_pred             HHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHH
Q 009850          168 QVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRR  234 (524)
Q Consensus       168 ~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~  234 (524)
                          +|+.+..+.++|.+|++.|++.+|+..++..+.-+|+++. |..||.+|..+|+..+|...+.+
T Consensus       370 ----~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE  433 (484)
T COG4783         370 ----DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAE  433 (484)
T ss_pred             ----CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHH
Confidence                8999999999999999999999999999999999999999 99999999999998888776654

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.40  E-value=2.7e-11  Score=113.89  Aligned_cols=166  Identities=16%  Similarity=0.177  Sum_probs=155.6

Q ss_pred             hcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 009850           40 HKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLD  119 (524)
Q Consensus        40 ~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~  119 (524)
                      ...|...+. ..++..+...|+-+.+.....++....|.+.+.+..+|....+.|+|.+|+..++++..+.|++.  .++
T Consensus        61 ~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~--~~~  137 (257)
T COG5010          61 LRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDW--EAW  137 (257)
T ss_pred             hcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCCh--hhh
Confidence            445667777 89999999999999999999999999999999999999999999999999999999999999998  888


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 009850          120 NILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAY  199 (524)
Q Consensus       120 ~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~  199 (524)
                      +.+|.+|.+.|++++|...|.+++++                          .|+++.+.+|+|..|.-.|+++.|..++
T Consensus       138 ~~lgaaldq~Gr~~~Ar~ay~qAl~L--------------------------~~~~p~~~nNlgms~~L~gd~~~A~~ll  191 (257)
T COG5010         138 NLLGAALDQLGRFDEARRAYRQALEL--------------------------APNEPSIANNLGMSLLLRGDLEDAETLL  191 (257)
T ss_pred             hHHHHHHHHccChhHHHHHHHHHHHh--------------------------ccCCchhhhhHHHHHHHcCCHHHHHHHH
Confidence            99999999999999999999999999                          8999999999999999999999999999


Q ss_pred             HHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHH
Q 009850          200 RRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRR  234 (524)
Q Consensus       200 ~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~  234 (524)
                      ..+....+.+.. ..|++.+...+|++++|...-.+
T Consensus       192 l~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~  227 (257)
T COG5010         192 LPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ  227 (257)
T ss_pred             HHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence            999998887777 99999999999999999887664

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.40  E-value=8.1e-12  Score=131.04  Aligned_cols=187  Identities=22%  Similarity=0.179  Sum_probs=150.9

Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhh
Q 009850           76 GDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSR--------CSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQ  147 (524)
Q Consensus        76 ~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~--------~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~  147 (524)
                      .|.-..+...+|..|..+|+|+.|+..++.+++.        +|.-.  .....+|.+|..++++++|+..|++++.+..
T Consensus       195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va--~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e  272 (508)
T KOG1840|consen  195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVA--SMLNILALVYRSLGKYDEAVNLYEEALTIRE  272 (508)
T ss_pred             CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHH--HHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            4666677888999999999999999999999998        33332  4556789999999999999999999998832


Q ss_pred             ccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-----c---HH-HHHHHHH
Q 009850          148 QGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPD-----N---NK-MCNLGIC  218 (524)
Q Consensus       148 ~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-----~---~~-~~~Lg~~  218 (524)
                      ....                  ..+|..+.++.+||.+|...|+|++|..++++|+++...     .   .. +.+++.+
T Consensus       273 ~~~G------------------~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~  334 (508)
T KOG1840|consen  273 EVFG------------------EDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAI  334 (508)
T ss_pred             HhcC------------------CCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHH
Confidence            1111                  114566789999999999999999999999999986422     2   22 8899999


Q ss_pred             HHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCC
Q 009850          219 LMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQML-KDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPC  296 (524)
Q Consensus       219 ~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~  296 (524)
                      +..++++++|+.+|++++              +.+..+...+ +..+..+.++|.+|..+|++.+|...|+++++..-.
T Consensus       335 ~~~~~~~Eea~~l~q~al--------------~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~  399 (508)
T KOG1840|consen  335 LQSMNEYEEAKKLLQKAL--------------KIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRE  399 (508)
T ss_pred             HHHhcchhHHHHHHHHHH--------------HHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence            999999999999999753              3344333333 366788999999999999999999999999976533

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.39  E-value=2.1e-12  Score=123.51  Aligned_cols=118  Identities=19%  Similarity=0.243  Sum_probs=97.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHH
Q 009850          177 RLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYER  255 (524)
Q Consensus       177 ~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~  255 (524)
                      +-+-+-|+-+++.++|++|+..|.+||+++|.++. |||++.+|.++|.++.|+..++                     .
T Consensus        82 E~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce---------------------~  140 (304)
T KOG0553|consen   82 ESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCE---------------------S  140 (304)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHH---------------------H
Confidence            34556688888888999999999999999999888 8889999999999998888888                     7


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCcccccccccccccccccc
Q 009850          256 AQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTTNAIKTRDDFADEN  317 (524)
Q Consensus       256 al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~l~~~~l~~~~q~lgd~~  317 (524)
                      ++.++|.+..+|..||.+|..+|++.+|+..|++++.++|.+.....  ++-++++.+++..
T Consensus       141 Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~--nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  141 ALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKS--NLKIAEQKLNEPK  200 (304)
T ss_pred             HHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHH--HHHHHHHHhcCCC
Confidence            88888888889999999999999999999999999999998886553  3666666665544

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.38  E-value=6e-12  Score=124.28  Aligned_cols=171  Identities=14%  Similarity=0.086  Sum_probs=151.8

Q ss_pred             ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH---------
Q 009850           45 GDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQ---------  115 (524)
Q Consensus        45 ~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~---------  115 (524)
                      +..+-..-+.++...|++++|+..--..+++++.+.++++..|.|++..++.+.|+.+|++++.++|+...         
T Consensus       168 c~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k  247 (486)
T KOG0550|consen  168 CFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPK  247 (486)
T ss_pred             hhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHH
Confidence            33344556788999999999999999999999999999999999999999999999999999999997632         


Q ss_pred             -HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCc----HHHHHHHHHHHHHcC
Q 009850          116 -ESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEA----TRLLGNLGWALMQQN  190 (524)
Q Consensus       116 -~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~----~~a~~~Lg~~~~~~g  190 (524)
                       ...+..-|.-.++.|+|..|.++|..+|.+                          +|++    +..|.+++.+..++|
T Consensus       248 ~le~~k~~gN~~fk~G~y~~A~E~Yteal~i--------------------------dP~n~~~naklY~nra~v~~rLg  301 (486)
T KOG0550|consen  248 KLEVKKERGNDAFKNGNYRKAYECYTEALNI--------------------------DPSNKKTNAKLYGNRALVNIRLG  301 (486)
T ss_pred             HHHHHHhhhhhHhhccchhHHHHHHHHhhcC--------------------------CccccchhHHHHHHhHhhhcccC
Confidence             234456677788999999999999999999                          6665    568999999999999


Q ss_pred             CHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccC
Q 009850          191 NYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVAD  241 (524)
Q Consensus       191 ~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~  241 (524)
                      +..+|+...+.++.++|.... +...|.|+..+++|++|+++|+++.....+
T Consensus       302 rl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s  353 (486)
T KOG0550|consen  302 RLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD  353 (486)
T ss_pred             CchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            999999999999999999999 999999999999999999999998655444

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.36  E-value=2.2e-10  Score=110.15  Aligned_cols=232  Identities=17%  Similarity=0.192  Sum_probs=167.9

Q ss_pred             hhhhH-HHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 009850           32 RSDSF-HAIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRV-----DSALKDMAIVMKQQNRAEEAIEAIKS  105 (524)
Q Consensus        32 ~~~~~-~~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~-----~~a~~~La~~~~~~g~~~eAi~~~~~  105 (524)
                      +.+.| +.+...|...++++.||+.+...|..+.||.+-+..++. |+.     .-++..||.-|+..|-++.|...|..
T Consensus        54 AvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~  132 (389)
T COG2956          54 AVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQ  132 (389)
T ss_pred             HHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence            33433 455667788889999999999999999999988776654 432     35678899999999999999999998


Q ss_pred             HHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhh--------------hcccHHHHHHH-hHHHHHh
Q 009850          106 LRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAF--------------NGKRTKTARSQ-GKKFQVS  170 (524)
Q Consensus       106 al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~--------------~~~~~~~a~~~-~~~~~~~  170 (524)
                      .+... ... ..+...|..+|....+|++|++.-++...+......+              .....+.+... .++  ..
T Consensus       133 L~de~-efa-~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA--lq  208 (389)
T COG2956         133 LVDEG-EFA-EGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA--LQ  208 (389)
T ss_pred             Hhcch-hhh-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH--Hh
Confidence            87643 222 2566777889999999999999998887775322210              01122222222 222  23


Q ss_pred             cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH--HHHHHHHHHHcCCHHHHHHHHHHhcccccCCC-----
Q 009850          171 VEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK--MCNLGICLMKQGRIGEAKETLRRVKPAVADGP-----  243 (524)
Q Consensus       171 ~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~--~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~-----  243 (524)
                      -+|....+-..+|.++...|+|++|++.++.+++.+|+...  .-.|..||..+|+.++....+.++....+...     
T Consensus       209 a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l  288 (389)
T COG2956         209 ADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELML  288 (389)
T ss_pred             hCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHH
Confidence            38889999999999999999999999999999999999877  77789999999999999999997755554432     


Q ss_pred             -------cCHHHHHHHHHHHHHhCCCCHHHHH
Q 009850          244 -------RGVDSHLKAYERAQQMLKDLESEMM  268 (524)
Q Consensus       244 -------~~~~~A~~~~~~al~~~p~~~~a~~  268 (524)
                             ...+.|...+.+-+...|..-..+-
T Consensus       289 ~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~r  320 (389)
T COG2956         289 ADLIELQEGIDAAQAYLTRQLRRKPTMRGFHR  320 (389)
T ss_pred             HHHHHHhhChHHHHHHHHHHHhhCCcHHHHHH
Confidence                   3344455555555666665544433

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.35  E-value=8.5e-11  Score=116.99  Aligned_cols=203  Identities=16%  Similarity=0.212  Sum_probs=162.9

Q ss_pred             HHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 009850           38 AIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQES  117 (524)
Q Consensus        38 ~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~  117 (524)
                      ++.....++.+..+.|++.+..|++++|...|++++..+....++++++|..+..+|+.++|+++|-++..+--++.  .
T Consensus       482 aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~--e  559 (840)
T KOG2003|consen  482 ALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNA--E  559 (840)
T ss_pred             HhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhH--H
Confidence            44555567778889999999999999999999999999999999999999999999999999999999877777776  6


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHh---HHHH-----HhcCCCcHHHHHHHHHHHHHc
Q 009850          118 LDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQG---KKFQ-----VSVEQEATRLLGNLGWALMQQ  189 (524)
Q Consensus       118 l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~---~~~~-----~~~~p~~~~a~~~Lg~~~~~~  189 (524)
                      +...++.+|..+.+..+|+++|.++..+.+.......+..+..-..+   ++++     ...-|-+.++.-.||..|...
T Consensus       560 vl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidt  639 (840)
T KOG2003|consen  560 VLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDT  639 (840)
T ss_pred             HHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhh
Confidence            77888999999999999999999998887666554432221111111   1111     122488888888899999999


Q ss_pred             CCHHHHHHHHHHHHhhCCCcHHH-HHHHHHHHHcCCHHHHHHHHHHhcccccCC
Q 009850          190 NNYIEAEDAYRRALSIAPDNNKM-CNLGICLMKQGRIGEAKETLRRVKPAVADG  242 (524)
Q Consensus       190 g~~~eAi~~~~~Al~l~P~~~~~-~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~  242 (524)
                      .-+++|+.+|+++--+.|+...| ..++.|+.+.|+|..|...|+.....+|.+
T Consensus       640 qf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfped  693 (840)
T KOG2003|consen  640 QFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPED  693 (840)
T ss_pred             HHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccc
Confidence            99999999999999999988884 568899999999999999999766555544

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.34  E-value=1.6e-11  Score=117.46  Aligned_cols=118  Identities=19%  Similarity=0.125  Sum_probs=110.8

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 009850           48 PYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYK  127 (524)
Q Consensus        48 ~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~  127 (524)
                      ..-.-|.-++..++|.+|+..|.+||+++|.++..|.+.|.+|.++|.++.|++.++.++.++|.+.  .+|..||.+|.
T Consensus        83 ~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~ys--kay~RLG~A~~  160 (304)
T KOG0553|consen   83 SLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYS--KAYGRLGLAYL  160 (304)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHH--HHHHHHHHHHH
Confidence            4556788999999999999999999999999999999999999999999999999999999999987  88899999999


Q ss_pred             HcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Q 009850          128 RCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYI  193 (524)
Q Consensus       128 ~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~  193 (524)
                      .+|++.+|++.|+++|++                          +|++..++.+|.++-.+.+...
T Consensus       161 ~~gk~~~A~~aykKaLel--------------------------dP~Ne~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  161 ALGKYEEAIEAYKKALEL--------------------------DPDNESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             ccCcHHHHHHHHHhhhcc--------------------------CCCcHHHHHHHHHHHHHhcCCC
Confidence            999999999999999999                          9999999999998888777665

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.34  E-value=7.5e-11  Score=113.96  Aligned_cols=198  Identities=10%  Similarity=0.036  Sum_probs=155.4

Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcc
Q 009850           76 GDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGK  155 (524)
Q Consensus        76 ~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~  155 (524)
                      +|.+.+-++.+|.-+...|++.+|+..|..+++.+|++-  .+.+..+.+|...|+-.-|+.-+.+++++          
T Consensus        34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y--~aifrRaT~yLAmGksk~al~Dl~rVlel----------  101 (504)
T KOG0624|consen   34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNY--QAIFRRATVYLAMGKSKAALQDLSRVLEL----------  101 (504)
T ss_pred             CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhH--HHHHHHHHHHhhhcCCccchhhHHHHHhc----------
Confidence            556777889999999999999999999999999999985  67788899999999999999999999999          


Q ss_pred             cHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH--------------H--HHHHHHH
Q 009850          156 RTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK--------------M--CNLGICL  219 (524)
Q Consensus       156 ~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~--------------~--~~Lg~~~  219 (524)
                                      .|+...+....|.+++++|.+++|+..|+.+|..+|.+..              |  ......+
T Consensus       102 ----------------KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~  165 (504)
T KOG0624|consen  102 ----------------KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSA  165 (504)
T ss_pred             ----------------CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHH
Confidence                            8999999999999999999999999999999999996621              1  2223344


Q ss_pred             HHcCCHHHHHHHHHHhcccccCCC-------------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 009850          220 MKQGRIGEAKETLRRVKPAVADGP-------------RGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLG  286 (524)
Q Consensus       220 ~~~G~~~eA~~~~~~a~~~~~~~~-------------~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~  286 (524)
                      .-.|+...|+....++++..+-+.             +....|+..++.+-.+..++.+.++.++.+++..|+.+.++..
T Consensus       166 ~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~  245 (504)
T KOG0624|consen  166 SGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKE  245 (504)
T ss_pred             hcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHH
Confidence            556777777777776655444332             4445566666666666666677777777777777777777777


Q ss_pred             HhhcccCCCCCCCcc
Q 009850          287 SSSIWQPQPCKDHIL  301 (524)
Q Consensus       287 ~~~al~~~P~~~~~l  301 (524)
                      .+..++++|++-.+.
T Consensus       246 iRECLKldpdHK~Cf  260 (504)
T KOG0624|consen  246 IRECLKLDPDHKLCF  260 (504)
T ss_pred             HHHHHccCcchhhHH
Confidence            777777777665543

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.33  E-value=1.9e-10  Score=128.91  Aligned_cols=243  Identities=14%  Similarity=0.039  Sum_probs=134.8

Q ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHH
Q 009850           46 DTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSR--CSDQAQESLDNILL  123 (524)
Q Consensus        46 ~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~--~p~~~~~~l~~~lg  123 (524)
                      ...+..+...|.+.|++++|...|+...   +.+..+|..+...|.+.|++++|+..|++....  .|+.   ..+..+.
T Consensus       259 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~---~t~~~ll  332 (697)
T PLN03081        259 TFVSCALIDMYSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQ---FTFSIMI  332 (697)
T ss_pred             ceeHHHHHHHHHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH---HHHHHHH
Confidence            3445666666677777777777666542   335566666667777777777777777666543  2333   3445555


Q ss_pred             HHHHHcCChHHHHHHHHHHHHHhhc-c------H--hh-hcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Q 009850          124 DLYKRCGRLDDQIALLKHKLYLIQQ-G------L--AF-NGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYI  193 (524)
Q Consensus       124 ~~~~~~g~~~eA~~~~~~al~l~~~-~------~--~~-~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~  193 (524)
                      ..+.+.|++++|.+.+..+++.... .      +  .+ ..+..+.+.......    ...+..+|+.+...|.+.|+.+
T Consensus       333 ~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m----~~~d~~t~n~lI~~y~~~G~~~  408 (697)
T PLN03081        333 RIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRM----PRKNLISWNALIAGYGNHGRGT  408 (697)
T ss_pred             HHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhC----CCCCeeeHHHHHHHHHHcCCHH
Confidence            6666666666666666666554310 0      0  01 012223332222211    1124456666677777777777


Q ss_pred             HHHHHHHHHHhh--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHhcccc---cCC------------CcCHHHHHHHHHHH
Q 009850          194 EAEDAYRRALSI--APDNNKMCNLGICLMKQGRIGEAKETLRRVKPAV---ADG------------PRGVDSHLKAYERA  256 (524)
Q Consensus       194 eAi~~~~~Al~l--~P~~~~~~~Lg~~~~~~G~~~eA~~~~~~a~~~~---~~~------------~~~~~~A~~~~~~a  256 (524)
                      +|++.|+++.+.  .|+...+..+..++.+.|+.++|..+|+......   |+.            .|..++|.+.+++.
T Consensus       409 ~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~  488 (697)
T PLN03081        409 KAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA  488 (697)
T ss_pred             HHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC
Confidence            777777766653  3554446666666666677777766666654322   211            15556666555432


Q ss_pred             HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCc
Q 009850          257 QQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHI  300 (524)
Q Consensus       257 l~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~  300 (524)
                       ...| +...|..+...+...|+++.|...++.++...|.+...
T Consensus       489 -~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~  530 (697)
T PLN03081        489 -PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNN  530 (697)
T ss_pred             -CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcc
Confidence             1222 23456666666666666666666666666666665443

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.31  E-value=7.7e-11  Score=103.41  Aligned_cols=112  Identities=22%  Similarity=0.229  Sum_probs=102.4

Q ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHH
Q 009850          101 EAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLG  180 (524)
Q Consensus       101 ~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~  180 (524)
                      ..|++++..+|++.  .....+|..+...|++++|+..|++++..                          +|.++.++.
T Consensus         4 ~~~~~~l~~~p~~~--~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------------------------~p~~~~~~~   55 (135)
T TIGR02552         4 ATLKDLLGLDSEQL--EQIYALAYNLYQQGRYDEALKLFQLLAAY--------------------------DPYNSRYWL   55 (135)
T ss_pred             hhHHHHHcCChhhH--HHHHHHHHHHHHcccHHHHHHHHHHHHHh--------------------------CCCcHHHHH
Confidence            46889999999886  56788899999999999999999999988                          899999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhccccc
Q 009850          181 NLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVA  240 (524)
Q Consensus       181 ~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~  240 (524)
                      .+|.++...|++++|+.+|++++..+|+++. ++++|.++...|++++|+..|+++....+
T Consensus        56 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  116 (135)
T TIGR02552        56 GLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICG  116 (135)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999 99999999999999999999995544433

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.30  E-value=2.3e-09  Score=123.12  Aligned_cols=94  Identities=16%  Similarity=0.181  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHH
Q 009850           47 TPYVRAKNVQLVDKDPEKAIPLFWAAINAGD-RVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRC--SDQAQESLDNILL  123 (524)
Q Consensus        47 ~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p-~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~--p~~~~~~l~~~lg  123 (524)
                      ..|..+-..|.+.|++++|...|+++.+... -+...|..+...|.+.|++++|+..|+......  |+.   ..++.+.
T Consensus       473 ~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~---vTYnsLI  549 (1060)
T PLN03218        473 KLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDR---VVFNALI  549 (1060)
T ss_pred             HHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCH---HHHHHHH
Confidence            3444444555555555555555555544321 134444445555555555555555555443321  222   2344444


Q ss_pred             HHHHHcCChHHHHHHHHHHH
Q 009850          124 DLYKRCGRLDDQIALLKHKL  143 (524)
Q Consensus       124 ~~~~~~g~~~eA~~~~~~al  143 (524)
                      ..|.+.|++++|.++|.++.
T Consensus       550 ~a~~k~G~~deA~~lf~eM~  569 (1060)
T PLN03218        550 SACGQSGAVDRAFDVLAEMK  569 (1060)
T ss_pred             HHHHHCCCHHHHHHHHHHHH
Confidence            44444455555555544443

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.29  E-value=1.3e-10  Score=114.71  Aligned_cols=202  Identities=16%  Similarity=0.132  Sum_probs=160.4

Q ss_pred             ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 009850           45 GDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLD  124 (524)
Q Consensus        45 ~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~  124 (524)
                      ..+.|+--|...+..+++..|+.+-.++|+.+|.+..++...|.++..+|+.++|+-.|+.+..+.|...  ..+.-|..
T Consensus       299 ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL--~~Y~GL~h  376 (564)
T KOG1174|consen  299 TASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRL--EIYRGLFH  376 (564)
T ss_pred             chhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhH--HHHHHHHH
Confidence            4456888889999999999999999999999999999999999999999999999999999999999776  67788888


Q ss_pred             HHHHcCChHHHHHHHHHHHHHhhccH---hhhc--------ccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Q 009850          125 LYKRCGRLDDQIALLKHKLYLIQQGL---AFNG--------KRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYI  193 (524)
Q Consensus       125 ~~~~~g~~~eA~~~~~~al~l~~~~~---~~~~--------~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~  193 (524)
                      +|...|++.+|...-+.+++..+.+.   .+.+        ...+.+..+..+ .+.++|+...+-..++.++...|.++
T Consensus       377 sYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek-~L~~~P~Y~~AV~~~AEL~~~Eg~~~  455 (564)
T KOG1174|consen  377 SYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEK-SLKINPIYTPAVNLIAELCQVEGPTK  455 (564)
T ss_pred             HHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHh-hhccCCccHHHHHHHHHHHHhhCccc
Confidence            99999999999988888877643221   1111        122222222221 24557888888888888888888888


Q ss_pred             HHHHHHHHHHhhCCCcHHHHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 009850          194 EAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNK  270 (524)
Q Consensus       194 eAi~~~~~Al~l~P~~~~~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l  270 (524)
                      .++..+++.+...|++.-+..||.++...+.+.+|+..|.                     .++.++|++..+.-.+
T Consensus       456 D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~---------------------~ALr~dP~~~~sl~Gl  511 (564)
T KOG1174|consen  456 DIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYY---------------------KALRQDPKSKRTLRGL  511 (564)
T ss_pred             hHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHH---------------------HHHhcCccchHHHHHH
Confidence            8888888888888887778888888888888888888888                     6777777776554443

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.28  E-value=1.6e-11  Score=128.89  Aligned_cols=212  Identities=16%  Similarity=0.080  Sum_probs=139.2

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Q 009850           49 YVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKR  128 (524)
Q Consensus        49 ~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~  128 (524)
                      -..+|..+...|-...|+..|++.        +.|-....||...|+..+|.....+-++.+|+.   .+|..+|++...
T Consensus       401 q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~lek~~d~---~lyc~LGDv~~d  469 (777)
T KOG1128|consen  401 QRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELEKDPDP---RLYCLLGDVLHD  469 (777)
T ss_pred             HHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhcCCCcc---hhHHHhhhhccC
Confidence            345666666666666666666653        556666666666666666666666666633333   455555555444


Q ss_pred             cCChHHHHHHHHHHHHHhhccH--h-hhcccHHHHH-HHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009850          129 CGRLDDQIALLKHKLYLIQQGL--A-FNGKRTKTAR-SQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALS  204 (524)
Q Consensus       129 ~g~~~eA~~~~~~al~l~~~~~--~-~~~~~~~~a~-~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~  204 (524)
                      ..-|++|.++.+..-.......  . +....+..+. .+..  ...++|-....|+.+|.+..+.++++.|..+|..++.
T Consensus       470 ~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~--sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvt  547 (777)
T KOG1128|consen  470 PSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLER--SLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT  547 (777)
T ss_pred             hHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHH--HhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhh
Confidence            4444444444443322211110  0 1111111111 1111  1233888899999999999999999999999999999


Q ss_pred             hCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 009850          205 IAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDA  283 (524)
Q Consensus       205 l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA  283 (524)
                      ++|++.. |.|++.+|.+.|+..+|...+.+                     +++-+-+....|-|.-.+..+.|.+++|
T Consensus       548 L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~E---------------------AlKcn~~~w~iWENymlvsvdvge~eda  606 (777)
T KOG1128|consen  548 LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKE---------------------ALKCNYQHWQIWENYMLVSVDVGEFEDA  606 (777)
T ss_pred             cCCCchhhhhhhhHHHHHHhhhHHHHHHHHH---------------------HhhcCCCCCeeeechhhhhhhcccHHHH
Confidence            9999998 99999999999999999999884                     4444445556667777788888999999


Q ss_pred             HHHHhhcccCC
Q 009850          284 FLGSSSIWQPQ  294 (524)
Q Consensus       284 i~~~~~al~~~  294 (524)
                      +..|.+.+.+.
T Consensus       607 ~~A~~rll~~~  617 (777)
T KOG1128|consen  607 IKAYHRLLDLR  617 (777)
T ss_pred             HHHHHHHHHhh
Confidence            99988877553

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.26  E-value=1.8e-10  Score=101.57  Aligned_cols=102  Identities=11%  Similarity=-0.033  Sum_probs=58.0

Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhccc
Q 009850           77 DRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKR  156 (524)
Q Consensus        77 p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~  156 (524)
                      ++.-+..+.+|..++..|++++|...|+-+..++|.+.  ..|+.||.++..+|+|.+|+..|.+++.+           
T Consensus        32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~--~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L-----------   98 (157)
T PRK15363         32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSF--DYWFRLGECCQAQKHWGEAIYAYGRAAQI-----------   98 (157)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH--HHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----------
Confidence            44455555555555555555555555555555555554  44555555555555555555555555555           


Q ss_pred             HHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 009850          157 TKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIA  206 (524)
Q Consensus       157 ~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~  206 (524)
                                     +|+++..++++|.|++..|+.+.|...|+.++...
T Consensus        99 ---------------~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~  133 (157)
T PRK15363         99 ---------------KIDAPQAPWAAAECYLACDNVCYAIKALKAVVRIC  133 (157)
T ss_pred             ---------------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence                           55555555555555555555555555555555544

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.25  E-value=1.9e-09  Score=100.68  Aligned_cols=176  Identities=18%  Similarity=0.087  Sum_probs=148.8

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcC
Q 009850           51 RAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCG  130 (524)
Q Consensus        51 ~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g  130 (524)
                      ....+.+..|+.+-|..++.+.-...|+........|..+...|++++|+++|+..+.-+|.+.  .++.....+...+|
T Consensus        57 qV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~--v~~KRKlAilka~G  134 (289)
T KOG3060|consen   57 QVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDT--VIRKRKLAILKAQG  134 (289)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchh--HHHHHHHHHHHHcC
Confidence            4556677889999999999999988999999999999999999999999999999999999885  44555556677899


Q ss_pred             ChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH
Q 009850          131 RLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNN  210 (524)
Q Consensus       131 ~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~  210 (524)
                      +.-+|++.+...++.                          -+.|.++|..++.+|...|+|++|.-+|++++-+.|.++
T Consensus       135 K~l~aIk~ln~YL~~--------------------------F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~  188 (289)
T KOG3060|consen  135 KNLEAIKELNEYLDK--------------------------FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNP  188 (289)
T ss_pred             CcHHHHHHHHHHHHH--------------------------hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcH
Confidence            999999999998888                          789999999999999999999999999999999999999


Q ss_pred             H-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 009850          211 K-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGG  272 (524)
Q Consensus       211 ~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~  272 (524)
                      . +..+|.+++-+|-.+.    +              ..+.+.|.+++.+.|.+..+++.+-.
T Consensus       189 l~f~rlae~~Yt~gg~eN----~--------------~~arkyy~~alkl~~~~~ral~GI~l  233 (289)
T KOG3060|consen  189 LYFQRLAEVLYTQGGAEN----L--------------ELARKYYERALKLNPKNLRALFGIYL  233 (289)
T ss_pred             HHHHHHHHHHHHHhhHHH----H--------------HHHHHHHHHHHHhChHhHHHHHHHHH
Confidence            9 7789999988875221    1              12444555888888877777666543

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.25  E-value=4.1e-09  Score=111.99  Aligned_cols=245  Identities=13%  Similarity=0.029  Sum_probs=166.0

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 009850           47 TPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLY  126 (524)
Q Consensus        47 ~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~  126 (524)
                      +...-...++...|++++|+.++......-.+....+...|.++..+|++++|...|+.++..+|++.  ..+..+..+.
T Consensus         5 E~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~--~Yy~~L~~~~   82 (517)
T PF12569_consen    5 ELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNY--DYYRGLEEAL   82 (517)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH--HHHHHHHHHH
Confidence            34555667778888888888888887777778788888888888888888888888888888888875  3334444333


Q ss_pred             HHc-----CChHHHHHHHHHHHHHhhccHh---------------------------------------hhc--ccHHHH
Q 009850          127 KRC-----GRLDDQIALLKHKLYLIQQGLA---------------------------------------FNG--KRTKTA  160 (524)
Q Consensus       127 ~~~-----g~~~eA~~~~~~al~l~~~~~~---------------------------------------~~~--~~~~~a  160 (524)
                      ...     ...+.-..+|++....++.+.+                                       +..  ......
T Consensus        83 g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i  162 (517)
T PF12569_consen   83 GLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAII  162 (517)
T ss_pred             hhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHH
Confidence            111     1344445555554433321111                                       000  001111


Q ss_pred             HHHhHHHHHh--------------cCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcC
Q 009850          161 RSQGKKFQVS--------------VEQEA--TRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQG  223 (524)
Q Consensus       161 ~~~~~~~~~~--------------~~p~~--~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G  223 (524)
                      ......+...              ..|..  ..+++.++..|-..|++++|+.+.++||+..|..++ ++..|.++...|
T Consensus       163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G  242 (517)
T PF12569_consen  163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAG  242 (517)
T ss_pred             HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCC
Confidence            1111111111              01122  357789999999999999999999999999999999 999999999999


Q ss_pred             CHHHHHHHHHHhcccccCCC-------------cCHHHHHHHHHHHHHhCCCC-------HHHH--HHHHHHHHHcCCHH
Q 009850          224 RIGEAKETLRRVKPAVADGP-------------RGVDSHLKAYERAQQMLKDL-------ESEM--MNKGGDRVEQSRLF  281 (524)
Q Consensus       224 ~~~eA~~~~~~a~~~~~~~~-------------~~~~~A~~~~~~al~~~p~~-------~~a~--~~lg~~~~~~g~~~  281 (524)
                      ++.+|..+++.+...+..+-             +..++|.+.+.......-+-       --.|  ...|.+|.++|++.
T Consensus       243 ~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~  322 (517)
T PF12569_consen  243 DLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYG  322 (517)
T ss_pred             CHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            99999999999977666553             67777777666554444111       1133  44589999999999


Q ss_pred             HHHHHHhhcccC
Q 009850          282 DAFLGSSSIWQP  293 (524)
Q Consensus       282 eAi~~~~~al~~  293 (524)
                      .|+..|..+.+.
T Consensus       323 ~ALk~~~~v~k~  334 (517)
T PF12569_consen  323 LALKRFHAVLKH  334 (517)
T ss_pred             HHHHHHHHHHHH
Confidence            999988766543

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.25  E-value=1.8e-10  Score=124.21  Aligned_cols=172  Identities=12%  Similarity=0.100  Sum_probs=121.0

Q ss_pred             CChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHH
Q 009850           60 KDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALL  139 (524)
Q Consensus        60 g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~  139 (524)
                      .+...|+..|-+++++++..+.++..||.+|+.--+...|..+|++|.++++.+.  ..+...++.|.+...++.|....
T Consensus       472 K~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatda--eaaaa~adtyae~~~we~a~~I~  549 (1238)
T KOG1127|consen  472 KNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDA--EAAAASADTYAEESTWEEAFEIC  549 (1238)
T ss_pred             hhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhh--hhHHHHHHHhhccccHHHHHHHH
Confidence            3477888888888888888888888888888877788888888888888888775  55566677777888888877775


Q ss_pred             HHHHHHhhccH----------hhhc-cc-HHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 009850          140 KHKLYLIQQGL----------AFNG-KR-TKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAP  207 (524)
Q Consensus       140 ~~al~l~~~~~----------~~~~-~~-~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P  207 (524)
                      -.+-+..+...          .+.. +. ..+...++.  ....+|.+...|..+|.+|...|+|..|+..|.+|..++|
T Consensus       550 l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQs--ALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP  627 (1238)
T KOG1127|consen  550 LRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQS--ALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRP  627 (1238)
T ss_pred             HHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHH--HhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCc
Confidence            54444321111          1111 11 111111111  1233788888888888888888888888888888888888


Q ss_pred             CcHH-HHHHHHHHHHcCCHHHHHHHHHHh
Q 009850          208 DNNK-MCNLGICLMKQGRIGEAKETLRRV  235 (524)
Q Consensus       208 ~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a  235 (524)
                      .+.. .+..+......|+|.+|+..+..+
T Consensus       628 ~s~y~~fk~A~~ecd~GkYkeald~l~~i  656 (1238)
T KOG1127|consen  628 LSKYGRFKEAVMECDNGKYKEALDALGLI  656 (1238)
T ss_pred             HhHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            8777 777788888888888888888764

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.25  E-value=9.7e-10  Score=111.49  Aligned_cols=153  Identities=21%  Similarity=0.141  Sum_probs=140.6

Q ss_pred             CCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 009850           43 PVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNIL  122 (524)
Q Consensus        43 p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~l  122 (524)
                      +....++|..+..++..|++++|+..++..+...|+|+..+...+.++...|+..+|++.+++++.++|+.+  .++..+
T Consensus       303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~--~l~~~~  380 (484)
T COG4783         303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSP--LLQLNL  380 (484)
T ss_pred             ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc--HHHHHH
Confidence            677889999999999999999999999999999999999999999999999999999999999999999986  788999


Q ss_pred             HHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009850          123 LDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRA  202 (524)
Q Consensus       123 g~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~A  202 (524)
                      |..|.+.|++.+|+..+...+.-                          +|+++..|..|+.+|..+|+-.+|...    
T Consensus       381 a~all~~g~~~eai~~L~~~~~~--------------------------~p~dp~~w~~LAqay~~~g~~~~a~~A----  430 (484)
T COG4783         381 AQALLKGGKPQEAIRILNRYLFN--------------------------DPEDPNGWDLLAQAYAELGNRAEALLA----  430 (484)
T ss_pred             HHHHHhcCChHHHHHHHHHHhhc--------------------------CCCCchHHHHHHHHHHHhCchHHHHHH----
Confidence            99999999999999999999877                          899999999999999999999888776    


Q ss_pred             HhhCCCcHHHHHHHHHHHHcCCHHHHHHHHHHhcccc
Q 009850          203 LSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPAV  239 (524)
Q Consensus       203 l~l~P~~~~~~~Lg~~~~~~G~~~eA~~~~~~a~~~~  239 (524)
                                  .+..|...|++++|+..+..+....
T Consensus       431 ------------~AE~~~~~G~~~~A~~~l~~A~~~~  455 (484)
T COG4783         431 ------------RAEGYALAGRLEQAIIFLMRASQQV  455 (484)
T ss_pred             ------------HHHHHHhCCCHHHHHHHHHHHHHhc
Confidence                        4566668889999998888765444

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.25  E-value=2.2e-09  Score=120.29  Aligned_cols=241  Identities=14%  Similarity=0.047  Sum_probs=133.0

Q ss_pred             ChHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHH
Q 009850           45 GDTPYVRAKNVQLVDKDPEKAIPLFWAAINA--GDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCS-DQAQESLDNI  121 (524)
Q Consensus        45 ~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~--~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p-~~~~~~l~~~  121 (524)
                      +..+|..+...|...|++++|+..|++....  .| +...+..+..++.+.|++++|.+.+..+++..- .+.  .+++.
T Consensus       289 ~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~--~~~~~  365 (697)
T PLN03081        289 TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI-DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDI--VANTA  365 (697)
T ss_pred             ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCe--eehHH
Confidence            4445666666666666666666666666543  23 344566666666666666666666666665542 222  34556


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHHhh-------ccHhhhcccHHHHH-HHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Q 009850          122 LLDLYKRCGRLDDQIALLKHKLYLIQ-------QGLAFNGKRTKTAR-SQGKKFQVSVEQEATRLLGNLGWALMQQNNYI  193 (524)
Q Consensus       122 lg~~~~~~g~~~eA~~~~~~al~l~~-------~~~~~~~~~~~~a~-~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~  193 (524)
                      +...|.+.|++++|...|++..+.+.       .+++. .+..+.+. .+.+.....+.|+ ..++..+-.++.+.|+.+
T Consensus       366 Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~-~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~~~  443 (697)
T PLN03081        366 LVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGN-HGRGTKAVEMFERMIAEGVAPN-HVTFLAVLSACRYSGLSE  443 (697)
T ss_pred             HHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHhcCCcHH
Confidence            66666666666666666665543221       01111 12223332 2222233333444 334555556666666666


Q ss_pred             HHHHHHHHHHhh---CCCcHHHHHHHHHHHHcCCHHHHHHHHHHhcccccCC------------CcCHHHHHHHHHHHHH
Q 009850          194 EAEDAYRRALSI---APDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVADG------------PRGVDSHLKAYERAQQ  258 (524)
Q Consensus       194 eAi~~~~~Al~l---~P~~~~~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~------------~~~~~~A~~~~~~al~  258 (524)
                      +|..+|+.+.+.   .|+...|..+..+|.+.|++++|.+.+++. +..|+.            .++.+.+...+++.++
T Consensus       444 ~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~  522 (697)
T PLN03081        444 QGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG  522 (697)
T ss_pred             HHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC
Confidence            666666666542   233333556666666666666666666653 111111            1455566666666666


Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcc
Q 009850          259 MLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIW  291 (524)
Q Consensus       259 ~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al  291 (524)
                      ..|+....|..+..+|...|++++|...++...
T Consensus       523 ~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~  555 (697)
T PLN03081        523 MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLK  555 (697)
T ss_pred             CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            666666666666666666666666666665544

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.23  E-value=4e-10  Score=99.42  Aligned_cols=101  Identities=16%  Similarity=-0.011  Sum_probs=95.5

Q ss_pred             CCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 009850           43 PVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNIL  122 (524)
Q Consensus        43 p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~l  122 (524)
                      +..-+..+.+|..++..|++++|...|+.+...+|.+...|++||.|+..+|+|++|+..|.+++.++|+++  ..+..+
T Consensus        32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp--~~~~~a  109 (157)
T PRK15363         32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAP--QAPWAA  109 (157)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc--hHHHHH
Confidence            344567889999999999999999999999999999999999999999999999999999999999999998  677889


Q ss_pred             HHHHHHcCChHHHHHHHHHHHHH
Q 009850          123 LDLYKRCGRLDDQIALLKHKLYL  145 (524)
Q Consensus       123 g~~~~~~g~~~eA~~~~~~al~l  145 (524)
                      |.++...|+.+.|...|+.++..
T Consensus       110 g~c~L~lG~~~~A~~aF~~Ai~~  132 (157)
T PRK15363        110 AECYLACDNVCYAIKALKAVVRI  132 (157)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHH
Confidence            99999999999999999999988

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.22  E-value=7.5e-09  Score=118.90  Aligned_cols=245  Identities=11%  Similarity=0.020  Sum_probs=165.6

Q ss_pred             CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHH
Q 009850           44 VGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGD-RVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSD-QAQESLDNI  121 (524)
Q Consensus        44 ~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p-~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~-~~~~~l~~~  121 (524)
                      .+...|..+-..+...|++++|...|+.+.+... -+...|..+...|.+.|++++|.+.|+++...... +.  ..|+.
T Consensus       435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~Pdv--vTyna  512 (1060)
T PLN03218        435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANV--HTFGA  512 (1060)
T ss_pred             CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCH--HHHHH
Confidence            3556788888889999999999999999988643 35678888999999999999999999998876432 33  67788


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHHh--hccHh--------hhcccHHHHHHHhHHHH---HhcCCCcHHHHHHHHHHHHH
Q 009850          122 LLDLYKRCGRLDDQIALLKHKLYLI--QQGLA--------FNGKRTKTARSQGKKFQ---VSVEQEATRLLGNLGWALMQ  188 (524)
Q Consensus       122 lg~~~~~~g~~~eA~~~~~~al~l~--~~~~~--------~~~~~~~~a~~~~~~~~---~~~~p~~~~a~~~Lg~~~~~  188 (524)
                      +...|.+.|++++|+.+|+.+....  +....        ...+..+.+........   ..+.|+ ..+|..+-..|.+
T Consensus       513 LI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k  591 (1060)
T PLN03218        513 LIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACAN  591 (1060)
T ss_pred             HHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHH
Confidence            8889999999999999999886543  11111        11123333333333222   123444 4567777777888


Q ss_pred             cCCHHHHHHHHHHHHhhCC-CcHH-HHHHHHHHHHcCCHHHHHHHHHHhccc--ccCC------------CcCHHHHHHH
Q 009850          189 QNNYIEAEDAYRRALSIAP-DNNK-MCNLGICLMKQGRIGEAKETLRRVKPA--VADG------------PRGVDSHLKA  252 (524)
Q Consensus       189 ~g~~~eAi~~~~~Al~l~P-~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~--~~~~------------~~~~~~A~~~  252 (524)
                      .|++++|.+.|+++.+.+. .+.. |..+...|.+.|++++|+..|++....  .|+.            .++.++|.+.
T Consensus       592 ~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l  671 (1060)
T PLN03218        592 AGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEI  671 (1060)
T ss_pred             CCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence            8888888888888877652 2333 777777777888888888877776433  2221            1556666666


Q ss_pred             HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHhhcc
Q 009850          253 YERAQQML-KDLESEMMNKGGDRVEQSRLFDAFLGSSSIW  291 (524)
Q Consensus       253 ~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al  291 (524)
                      +++..+.. +-+...+..+...|.+.|++++|+..|+...
T Consensus       672 ~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~  711 (1060)
T PLN03218        672 LQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIK  711 (1060)
T ss_pred             HHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            66665543 2334566666666666677666666666553

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.22  E-value=9.1e-10  Score=121.97  Aligned_cols=137  Identities=9%  Similarity=0.020  Sum_probs=99.3

Q ss_pred             hcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH----
Q 009850           40 HKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQ----  115 (524)
Q Consensus        40 ~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~----  115 (524)
                      .+-|...++|..|...+...+++++|+..++.++...|+....++.+|.++.+.+++.+|...  .++...+.+..    
T Consensus        25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~v  102 (906)
T PRK14720         25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIV  102 (906)
T ss_pred             cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHH
Confidence            456778889999999999999999999999999999999999999999999999998877666  55555554320    


Q ss_pred             -------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHH
Q 009850          116 -------------ESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNL  182 (524)
Q Consensus       116 -------------~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~L  182 (524)
                                   -.+++.+|.+|.++|++++|...|++++++                          +|+++.+++++
T Consensus       103 e~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~--------------------------D~~n~~aLNn~  156 (906)
T PRK14720        103 EHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKA--------------------------DRDNPEIVKKL  156 (906)
T ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------------------------CcccHHHHHHH
Confidence                         024455566666666666666666666666                          56666666666


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhh
Q 009850          183 GWALMQQNNYIEAEDAYRRALSI  205 (524)
Q Consensus       183 g~~~~~~g~~~eAi~~~~~Al~l  205 (524)
                      |..|... +.++|+.++.+|+..
T Consensus       157 AY~~ae~-dL~KA~~m~~KAV~~  178 (906)
T PRK14720        157 ATSYEEE-DKEKAITYLKKAIYR  178 (906)
T ss_pred             HHHHHHh-hHHHHHHHHHHHHHH
Confidence            6666665 666666666666553

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.21  E-value=2.2e-09  Score=113.75  Aligned_cols=272  Identities=13%  Similarity=0.054  Sum_probs=214.0

Q ss_pred             HHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHH
Q 009850           38 AIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRC--SDQAQ  115 (524)
Q Consensus        38 ~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~--p~~~~  115 (524)
                      ..++...++..|-.+.......|+++.+.+.|++++...-...+.|+.++.+|...|....|+..++..+...  |+++.
T Consensus       315 r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s  394 (799)
T KOG4162|consen  315 RLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDIS  394 (799)
T ss_pred             HHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcch
Confidence            3445566777888899999999999999999999999888888999999999999999999999999999998  66652


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--------h-----ccHhhhc-----cc--------HHHHHHHhHHHHH
Q 009850          116 ESLDNILLDLYKRCGRLDDQIALLKHKLYLI--------Q-----QGLAFNG-----KR--------TKTARSQGKKFQV  169 (524)
Q Consensus       116 ~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~--------~-----~~~~~~~-----~~--------~~~a~~~~~~~~~  169 (524)
                       .+...-..++.+.|.+++++.+..+++...        +     .|+++..     ..        .+....+.++  +
T Consensus       395 -~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~a--v  471 (799)
T KOG4162|consen  395 -VLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEA--V  471 (799)
T ss_pred             -HHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHH--H
Confidence             233333455678899999999999998843        1     1111100     00        1111111111  4


Q ss_pred             hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc-HH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCC----
Q 009850          170 SVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDN-NK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGP----  243 (524)
Q Consensus       170 ~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~-~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~----  243 (524)
                      ..+|.|+.+.+.++.-|..+++.+.|.++.++++++++.+ .. |..++.++...+++.+|+.....++..+++++    
T Consensus       472 ~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~  551 (799)
T KOG4162|consen  472 QFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMD  551 (799)
T ss_pred             hcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhch
Confidence            5589999999999999999999999999999999996665 44 99999999999999999999998877766622    


Q ss_pred             --------------------------------------------------------------------------------
Q 009850          244 --------------------------------------------------------------------------------  243 (524)
Q Consensus       244 --------------------------------------------------------------------------------  243 (524)
                                                                                                      
T Consensus       552 ~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~  631 (799)
T KOG4162|consen  552 GKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSEL  631 (799)
T ss_pred             hhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccccc
Confidence                                                                                            


Q ss_pred             --------------------------------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcc
Q 009850          244 --------------------------------RGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIW  291 (524)
Q Consensus       244 --------------------------------~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al  291 (524)
                                                      +..+++.-++.++-.+.|-.+..|+..|.++..+|.+.+|..+|..++
T Consensus       632 ~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al  711 (799)
T KOG4162|consen  632 KLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL  711 (799)
T ss_pred             ccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH
Confidence                                            122345567788888889899999999999999999999999999999


Q ss_pred             cCCCCCCCccccccccccccc
Q 009850          292 QPQPCKDHILPTTNAIKTRDD  312 (524)
Q Consensus       292 ~~~P~~~~~l~~~~l~~~~q~  312 (524)
                      .++|++......++.++.+.|
T Consensus       712 ~ldP~hv~s~~Ala~~lle~G  732 (799)
T KOG4162|consen  712 ALDPDHVPSMTALAELLLELG  732 (799)
T ss_pred             hcCCCCcHHHHHHHHHHHHhC
Confidence            999999997755444444333

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.19  E-value=4.9e-10  Score=114.90  Aligned_cols=113  Identities=14%  Similarity=-0.003  Sum_probs=105.9

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Q 009850           49 YVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKR  128 (524)
Q Consensus        49 ~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~  128 (524)
                      +...|..++..|+|++|+.+|++++..+|++..+++.+|.+|..+|++++|+..+++++.++|+++  .+++.+|.+|..
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~--~a~~~lg~~~~~   82 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLA--KAYLRKGTACMK   82 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCH--HHHHHHHHHHHH
Confidence            567899999999999999999999999999999999999999999999999999999999999987  678899999999


Q ss_pred             cCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHc
Q 009850          129 CGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQ  189 (524)
Q Consensus       129 ~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~  189 (524)
                      +|++++|+..|++++++                          +|++..+...++.+....
T Consensus        83 lg~~~eA~~~~~~al~l--------------------------~P~~~~~~~~l~~~~~kl  117 (356)
T PLN03088         83 LEEYQTAKAALEKGASL--------------------------APGDSRFTKLIKECDEKI  117 (356)
T ss_pred             hCCHHHHHHHHHHHHHh--------------------------CCCCHHHHHHHHHHHHHH
Confidence            99999999999999999                          899998888887776555

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.18  E-value=1.6e-08  Score=100.16  Aligned_cols=240  Identities=12%  Similarity=0.063  Sum_probs=195.0

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHc
Q 009850           50 VRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRC  129 (524)
Q Consensus        50 ~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~  129 (524)
                      .+-|..-+..|+|.+|+....+.-+..+.-.-++..-+.+-.++|+++.|-.++.++-+..+++.. ......+.+....
T Consensus        88 ~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l-~v~ltrarlll~~  166 (400)
T COG3071          88 LNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTL-AVELTRARLLLNR  166 (400)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchH-HHHHHHHHHHHhC
Confidence            345677788999999999999988877776777777789999999999999999999999666532 4556778888899


Q ss_pred             CChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---
Q 009850          130 GRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIA---  206 (524)
Q Consensus       130 g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~---  206 (524)
                      |+++.|.....++++.                          .|.++.++...-.+|...|+|.+....+.+.-+..   
T Consensus       167 ~d~~aA~~~v~~ll~~--------------------------~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~  220 (400)
T COG3071         167 RDYPAARENVDQLLEM--------------------------TPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLS  220 (400)
T ss_pred             CCchhHHHHHHHHHHh--------------------------CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCC
Confidence            9999999999999988                          88888899888899999999888877776654321   


Q ss_pred             ---------------------C------------------CcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCC----
Q 009850          207 ---------------------P------------------DNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADG----  242 (524)
Q Consensus       207 ---------------------P------------------~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~----  242 (524)
                                           +                  .++. -..++.-+..+|+.++|....+++++..-+.    
T Consensus       221 ~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~  300 (400)
T COG3071         221 DEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR  300 (400)
T ss_pred             hHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH
Confidence                                 1                  1122 3456667889999999999999987665444    


Q ss_pred             ------CcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCccccccccccccccccc
Q 009850          243 ------PRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTTNAIKTRDDFADE  316 (524)
Q Consensus       243 ------~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~l~~~~l~~~~q~lgd~  316 (524)
                            +++...-++..++.+...|+.+..+..||..+.+.+.|.+|...++.+++..|......   -+.+....+|+.
T Consensus       301 ~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~---~la~~~~~~g~~  377 (400)
T COG3071         301 LIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYA---ELADALDQLGEP  377 (400)
T ss_pred             HHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHH---HHHHHHHHcCCh
Confidence                  26667788999999999999999999999999999999999999999999999877744   245555666665


Q ss_pred             ccc
Q 009850          317 NID  319 (524)
Q Consensus       317 ~~~  319 (524)
                      ...
T Consensus       378 ~~A  380 (400)
T COG3071         378 EEA  380 (400)
T ss_pred             HHH
Confidence            544

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.16  E-value=9.8e-10  Score=115.71  Aligned_cols=188  Identities=13%  Similarity=0.089  Sum_probs=152.9

Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHh--hh
Q 009850           76 GDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLA--FN  153 (524)
Q Consensus        76 ~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~--~~  153 (524)
                      -|........+|.++...|-..+|+..|++.          ..|.....+|...|+..+|....++-++..+....  +.
T Consensus       394 lpp~Wq~q~~laell~slGitksAl~I~Erl----------emw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~L  463 (777)
T KOG1128|consen  394 LPPIWQLQRLLAELLLSLGITKSALVIFERL----------EMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLL  463 (777)
T ss_pred             CCCcchHHHHHHHHHHHcchHHHHHHHHHhH----------HHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHh
Confidence            4555667788999999999999999999987          34445566788889999999988888874433332  12


Q ss_pred             cc------cHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHH
Q 009850          154 GK------RTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIG  226 (524)
Q Consensus       154 ~~------~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~  226 (524)
                      +.      .++.+..+.       +-.++.+...+|......++|+++.++|+..++++|-... |+++|.|..+++++.
T Consensus       464 GDv~~d~s~yEkawEls-------n~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q  536 (777)
T KOG1128|consen  464 GDVLHDPSLYEKAWELS-------NYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQ  536 (777)
T ss_pred             hhhccChHHHHHHHHHh-------hhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhH
Confidence            21      222232222       2234557788888888899999999999999999999999 999999999999999


Q ss_pred             HHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCcc
Q 009850          227 EAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL  301 (524)
Q Consensus       227 eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~l  301 (524)
                      .|..+|.                     +.+...|+...+|.|++..|...|+..+|...+..+++.+-.+..+-
T Consensus       537 ~av~aF~---------------------rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iW  590 (777)
T KOG1128|consen  537 AAVKAFH---------------------RCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIW  590 (777)
T ss_pred             HHHHHHH---------------------HHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeee
Confidence            9999999                     88999999999999999999999999999999999999997776644

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.15  E-value=8.5e-10  Score=119.14  Aligned_cols=222  Identities=12%  Similarity=0.028  Sum_probs=153.0

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 009850           47 TPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMK-----QQNRAEEAIEAIKSLRSRCSDQAQESLDNI  121 (524)
Q Consensus        47 ~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~-----~~g~~~eAi~~~~~al~~~p~~~~~~l~~~  121 (524)
                      ..+-......+....+.++--+|.+++...-+-....+..+..++     ...+...|+.+|-+++++++..+  ..+..
T Consensus       420 ~tl~lv~~~s~nd~slselswc~~~~~ek~mdva~~~~~e~~~~w~a~~~~rK~~~~al~ali~alrld~~~a--paf~~  497 (1238)
T KOG1127|consen  420 ITLDLVSSLSFNDDSLSELSWCLPRALEKMMDVALLLECENSEFWVALGCMRKNSALALHALIRALRLDVSLA--PAFAF  497 (1238)
T ss_pred             HHHHHHHHhhcCchhhhHhhHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcccchh--HHHHH
Confidence            333333444444444455555555555544443333333322222     23458899999999999999887  67788


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHHhhccHh--------hhc-ccHHHH-HHHhHHHHHhcCCCc--HHHHHHHHHHHHHc
Q 009850          122 LLDLYKRCGRLDDQIALLKHKLYLIQQGLA--------FNG-KRTKTA-RSQGKKFQVSVEQEA--TRLLGNLGWALMQQ  189 (524)
Q Consensus       122 lg~~~~~~g~~~eA~~~~~~al~l~~~~~~--------~~~-~~~~~a-~~~~~~~~~~~~p~~--~~a~~~Lg~~~~~~  189 (524)
                      ||.+|+..-+...|..+|++|.+++.....        +.. ...+.+ .......+  ..|..  ...|..+|..|...
T Consensus       498 LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~q--ka~a~~~k~nW~~rG~yyLea  575 (1238)
T KOG1127|consen  498 LGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQ--KAPAFACKENWVQRGPYYLEA  575 (1238)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhh--hchHHHHHhhhhhccccccCc
Confidence            999999999999999999999998733221        111 112222 22111111  12222  34566689999999


Q ss_pred             CCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHH
Q 009850          190 NNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMM  268 (524)
Q Consensus       190 g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~  268 (524)
                      ++..+|+..|+.+++.+|.+.. |..+|.+|...|++.-|+..|.                     ++..++|...-+.+
T Consensus       576 ~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~---------------------kAs~LrP~s~y~~f  634 (1238)
T KOG1127|consen  576 HNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFT---------------------KASLLRPLSKYGRF  634 (1238)
T ss_pred             cchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhh---------------------hhHhcCcHhHHHHH
Confidence            9999999999999999999988 9999999999999999998888                     67777777777778


Q ss_pred             HHHHHHHHcCCHHHHHHHHhhcccC
Q 009850          269 NKGGDRVEQSRLFDAFLGSSSIWQP  293 (524)
Q Consensus       269 ~lg~~~~~~g~~~eAi~~~~~al~~  293 (524)
                      ..+......|+|.+|+..+..++..
T Consensus       635 k~A~~ecd~GkYkeald~l~~ii~~  659 (1238)
T KOG1127|consen  635 KEAVMECDNGKYKEALDALGLIIYA  659 (1238)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            8888888888888888777666543

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.15  E-value=9.8e-10  Score=112.68  Aligned_cols=112  Identities=18%  Similarity=0.159  Sum_probs=102.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHH
Q 009850           83 LKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARS  162 (524)
Q Consensus        83 ~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~  162 (524)
                      +...|..++..|+|++|+.+|++++.++|+++  .++..+|.+|...|++++|+..+++++.+                 
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~--~a~~~~a~~~~~~g~~~eAl~~~~~Al~l-----------------   65 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNA--ELYADRAQANIKLGNFTEAVADANKAIEL-----------------   65 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----------------
Confidence            56678899999999999999999999999987  67888999999999999999999999999                 


Q ss_pred             HhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHc
Q 009850          163 QGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQ  222 (524)
Q Consensus       163 ~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~  222 (524)
                               +|+++.+++.+|.+++.+|+|++|+..|++++.++|++.. ...++.|..++
T Consensus        66 ---------~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl  117 (356)
T PLN03088         66 ---------DPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI  117 (356)
T ss_pred             ---------CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence                     8999999999999999999999999999999999999988 66677775555

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=99.15  E-value=1.1e-10  Score=115.12  Aligned_cols=124  Identities=16%  Similarity=0.094  Sum_probs=94.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-------HHHHHHHHHHcCCHHHHHHHHHHhcccccCCC-----
Q 009850          176 TRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-------MCNLGICLMKQGRIGEAKETLRRVKPAVADGP-----  243 (524)
Q Consensus       176 ~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-------~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~-----  243 (524)
                      ..++-+||+.|+-+|+|++|+.+-+.-+.+..+..+       +.|+|.|+.-+|+++.|+++|+..+.....--     
T Consensus       195 GRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vE  274 (639)
T KOG1130|consen  195 GRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVE  274 (639)
T ss_pred             cchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHH
Confidence            468889999999999999999999988887655422       67999999999999999999998632211110     


Q ss_pred             --------------cCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCC
Q 009850          244 --------------RGVDSHLKAYERAQQML------KDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  299 (524)
Q Consensus       244 --------------~~~~~A~~~~~~al~~~------p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~  299 (524)
                                    ..+..|+.++.+-+.+.      -....+++.||..|-..|..++|+...+..++..-....
T Consensus       275 AQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D  350 (639)
T KOG1130|consen  275 AQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVND  350 (639)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCC
Confidence                          23455565555544432      344578999999999999999999999999999865444

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.13  E-value=3.9e-09  Score=108.89  Aligned_cols=214  Identities=17%  Similarity=0.157  Sum_probs=158.6

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Q 009850           49 YVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKR  128 (524)
Q Consensus        49 ~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~  128 (524)
                      ++.--+.+...|+|++|+....+++...|++..+.+..-.++.+.++|++|+...+.-......+   ...+..+.|.++
T Consensus        15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~---~~~fEKAYc~Yr   91 (652)
T KOG2376|consen   15 LLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN---SFFFEKAYCEYR   91 (652)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc---hhhHHHHHHHHH
Confidence            33444566788999999999999999999999999999999999999999996655433322223   222566788889


Q ss_pred             cCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--
Q 009850          129 CGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIA--  206 (524)
Q Consensus       129 ~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~--  206 (524)
                      ++..++|+..++-   +                          ++.+..+....|.+++++|+|++|+..|+..++-+  
T Consensus        92 lnk~Dealk~~~~---~--------------------------~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d  142 (652)
T KOG2376|consen   92 LNKLDEALKTLKG---L--------------------------DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD  142 (652)
T ss_pred             cccHHHHHHHHhc---c--------------------------cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc
Confidence            9999999998882   2                          56667788888999999999999999998875422  


Q ss_pred             ----------------------------CCcH-H-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHH
Q 009850          207 ----------------------------PDNN-K-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERA  256 (524)
Q Consensus       207 ----------------------------P~~~-~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~a  256 (524)
                                                  |++. + +||.+.++...|+|.+|++.++.++.........-+..      -
T Consensus       143 d~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~------e  216 (652)
T KOG2376|consen  143 DQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTN------E  216 (652)
T ss_pred             hHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccc------h
Confidence                                        2212 2 78999999999999999999998732211111000000      0


Q ss_pred             HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCc
Q 009850          257 QQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHI  300 (524)
Q Consensus       257 l~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~  300 (524)
                      -.+..+.......++.++..+|+..+|...|...++.+|.+...
T Consensus       217 Eeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~  260 (652)
T KOG2376|consen  217 EEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPS  260 (652)
T ss_pred             hhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchH
Confidence            11112233467889999999999999999999999999988763

>PLN03077 Protein ECB2; Provisional

Probab=99.11  E-value=1.1e-08  Score=117.31  Aligned_cols=259  Identities=14%  Similarity=0.089  Sum_probs=168.4

Q ss_pred             cchhhhhhhHHHHhcCC--CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 009850           27 GVSRTRSDSFHAIHKVP--VGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIK  104 (524)
Q Consensus        27 ~~l~~~~~~~~~~~~~p--~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~  104 (524)
                      +.+......+..+...+  .....+..+...|.+.|++++|...|++..+   .+...|..+...|.+.|++++|+..|+
T Consensus       403 g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~  479 (857)
T PLN03077        403 GDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFR  479 (857)
T ss_pred             chHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHH
Confidence            45555555555444433  3445678888999999999999999988643   345678888899999999999999999


Q ss_pred             HHHHh-CCCcHHH--------------------------------HHHHHHHHHHHHcCChHHHHHHHHHHHHHh-----
Q 009850          105 SLRSR-CSDQAQE--------------------------------SLDNILLDLYKRCGRLDDQIALLKHKLYLI-----  146 (524)
Q Consensus       105 ~al~~-~p~~~~~--------------------------------~l~~~lg~~~~~~g~~~eA~~~~~~al~l~-----  146 (524)
                      +.+.. .|+...+                                .+++.+...|.+.|++++|...|+.. ..+     
T Consensus       480 ~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n  558 (857)
T PLN03077        480 QMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWN  558 (857)
T ss_pred             HHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHH
Confidence            88754 3333100                                11223446677777777777777665 111     


Q ss_pred             --hccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCcHHHHHHHHHHHH
Q 009850          147 --QQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSI---APDNNKMCNLGICLMK  221 (524)
Q Consensus       147 --~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l---~P~~~~~~~Lg~~~~~  221 (524)
                        -.+....+...++...+.+.......|+.. ++..+-..+.+.|++++|..+|+.+.+.   .|+...|..+..++.+
T Consensus       559 ~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~-T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r  637 (857)
T PLN03077        559 ILLTGYVAHGKGSMAVELFNRMVESGVNPDEV-TFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGR  637 (857)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcc-cHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHh
Confidence              011111122233333333333344456544 4555555677788888888888887743   3444347778888888


Q ss_pred             cCCHHHHHHHHHHhcccccCC------------CcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhh
Q 009850          222 QGRIGEAKETLRRVKPAVADG------------PRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSS  289 (524)
Q Consensus       222 ~G~~~eA~~~~~~a~~~~~~~------------~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~  289 (524)
                      .|++++|...+++. +..|+.            .++.+.+....++.+++.|++...+..++++|...|++++|....+.
T Consensus       638 ~G~~~eA~~~~~~m-~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~  716 (857)
T PLN03077        638 AGKLTEAYNFINKM-PITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKT  716 (857)
T ss_pred             CCCHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHH
Confidence            88888888888874 222221            15566667777788888888888888888888888888888877654


Q ss_pred             cc
Q 009850          290 IW  291 (524)
Q Consensus       290 al  291 (524)
                      .-
T Consensus       717 M~  718 (857)
T PLN03077        717 MR  718 (857)
T ss_pred             HH
Confidence            43

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.11  E-value=3.7e-09  Score=96.70  Aligned_cols=129  Identities=13%  Similarity=0.074  Sum_probs=100.0

Q ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCC-
Q 009850           96 AEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQE-  174 (524)
Q Consensus        96 ~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~-  174 (524)
                      +..+...+...++..+.+.....++.+|.++...|++++|+..|++++.+                          .|+ 
T Consensus        15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l--------------------------~~~~   68 (168)
T CHL00033         15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRL--------------------------EIDP   68 (168)
T ss_pred             cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------------------------cccc
Confidence            45555555555555555544567788888888888899998888888877                          333 


Q ss_pred             --cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHH-------HcCCHHHHHHHHHHhcccccCCCc
Q 009850          175 --ATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLM-------KQGRIGEAKETLRRVKPAVADGPR  244 (524)
Q Consensus       175 --~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~-------~~G~~~eA~~~~~~a~~~~~~~~~  244 (524)
                        .+.++.++|.++...|++++|+..|++++.++|.+.. +.++|.++.       .+|++++|+..+.+          
T Consensus        69 ~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~----------  138 (168)
T CHL00033         69 YDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ----------  138 (168)
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHH----------
Confidence              3458889999999999999999999999999888877 778888887       78888888888874          


Q ss_pred             CHHHHHHHHHHHHHhCCCCH
Q 009850          245 GVDSHLKAYERAQQMLKDLE  264 (524)
Q Consensus       245 ~~~~A~~~~~~al~~~p~~~  264 (524)
                          ++..|++++...|...
T Consensus       139 ----a~~~~~~a~~~~p~~~  154 (168)
T CHL00033        139 ----AAEYWKQAIALAPGNY  154 (168)
T ss_pred             ----HHHHHHHHHHhCcccH
Confidence                6778888999988654

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.10  E-value=2.3e-08  Score=93.53  Aligned_cols=192  Identities=16%  Similarity=0.084  Sum_probs=164.1

Q ss_pred             cCChHHHHHHHHHHHHc------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCCh
Q 009850           59 DKDPEKAIPLFWAAINA------GDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRL  132 (524)
Q Consensus        59 ~g~~~~Ai~~~~~al~~------~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~  132 (524)
                      ..+.++-++++...+..      .++....+-....+....|+.+-|..++++.....|.+.  .+....|..+...|++
T Consensus        25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~--RV~~lkam~lEa~~~~  102 (289)
T KOG3060|consen   25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSK--RVGKLKAMLLEATGNY  102 (289)
T ss_pred             ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhch
Confidence            34566666666666543      444455566777888889999999999999999999887  6667778889999999


Q ss_pred             HHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-
Q 009850          133 DDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-  211 (524)
Q Consensus       133 ~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-  211 (524)
                      ++|+++|+..++-                          +|.+..++-..-.+...+|+.-+||+.+..-++..+.+.+ 
T Consensus       103 ~~A~e~y~~lL~d--------------------------dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EA  156 (289)
T KOG3060|consen  103 KEAIEYYESLLED--------------------------DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEA  156 (289)
T ss_pred             hhHHHHHHHHhcc--------------------------CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHH
Confidence            9999999999988                          8998888888778888899999999999999999999999 


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHh
Q 009850          212 MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSR---LFDAFLGSS  288 (524)
Q Consensus       212 ~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~---~~eAi~~~~  288 (524)
                      |..++.+|...|+|++|.-+|+                     +.+-..|.++..+..+|.+++-+|.   +.-|..+|.
T Consensus       157 W~eLaeiY~~~~~f~kA~fClE---------------------E~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~  215 (289)
T KOG3060|consen  157 WHELAEIYLSEGDFEKAAFCLE---------------------ELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYE  215 (289)
T ss_pred             HHHHHHHHHhHhHHHHHHHHHH---------------------HHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            9999999999999999999999                     7788889999999999998887775   467888999


Q ss_pred             hcccCCCCCCC
Q 009850          289 SIWQPQPCKDH  299 (524)
Q Consensus       289 ~al~~~P~~~~  299 (524)
                      ++++++|.+..
T Consensus       216 ~alkl~~~~~r  226 (289)
T KOG3060|consen  216 RALKLNPKNLR  226 (289)
T ss_pred             HHHHhChHhHH
Confidence            99999995444

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.10  E-value=1.5e-08  Score=105.71  Aligned_cols=233  Identities=12%  Similarity=0.080  Sum_probs=189.1

Q ss_pred             HHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 009850           38 AIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQES  117 (524)
Q Consensus        38 ~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~  117 (524)
                      .+...|...++....|..+...|+-++|..+.+.++..++....+|+.+|.+++...+|++|+++|+.|+.+.|++.  .
T Consensus        33 iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~--q  110 (700)
T KOG1156|consen   33 ILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNL--Q  110 (700)
T ss_pred             HHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcH--H
Confidence            34578889999999999999999999999999999999999999999999999999999999999999999999997  7


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 009850          118 LDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAED  197 (524)
Q Consensus       118 l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~  197 (524)
                      ++.-++.+..++++++.....-.+.+++                          .|..-..|...+..+.-.|++..|..
T Consensus       111 ilrDlslLQ~QmRd~~~~~~tr~~LLql--------------------------~~~~ra~w~~~Avs~~L~g~y~~A~~  164 (700)
T KOG1156|consen  111 ILRDLSLLQIQMRDYEGYLETRNQLLQL--------------------------RPSQRASWIGFAVAQHLLGEYKMALE  164 (700)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHh--------------------------hhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            7788888888999999999888888888                          78888889999999999999999998


Q ss_pred             HHHHHHhhC---CCcHH------HHHHHHHHHHcCCHHHHHHHHHHhcccccCC-------------CcCHHHHHHHHHH
Q 009850          198 AYRRALSIA---PDNNK------MCNLGICLMKQGRIGEAKETLRRVKPAVADG-------------PRGVDSHLKAYER  255 (524)
Q Consensus       198 ~~~~Al~l~---P~~~~------~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~-------------~~~~~~A~~~~~~  255 (524)
                      ..+.-.+..   |+...      ......+..+.|.+++|.+.+....+...+.             .+.+++|...|..
T Consensus       165 il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~  244 (700)
T KOG1156|consen  165 ILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRR  244 (700)
T ss_pred             HHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHH
Confidence            888777655   33322      2345666778888888888887753333222             2678889999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCHHHHH-HHHhhcccCCCCCC
Q 009850          256 AQQMLKDLESEMMNKGGDRVEQSRLFDAF-LGSSSIWQPQPCKD  298 (524)
Q Consensus       256 al~~~p~~~~a~~~lg~~~~~~g~~~eAi-~~~~~al~~~P~~~  298 (524)
                      .+...|++...+..+-.++..-.+.-+++ ..|....+.-|...
T Consensus       245 Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e  288 (700)
T KOG1156|consen  245 LLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHE  288 (700)
T ss_pred             HHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccc
Confidence            99999999988887777765333444555 55666665555443

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.08  E-value=3.7e-08  Score=95.43  Aligned_cols=181  Identities=9%  Similarity=-0.047  Sum_probs=140.1

Q ss_pred             ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-HHHHH
Q 009850           45 GDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSAL---KDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQ-ESLDN  120 (524)
Q Consensus        45 ~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~---~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~-~~l~~  120 (524)
                      .+..++..|..++..|++++|+..|++++...|..+.+.   +.+|.++++.+++++|+..+++.++.+|+++. ..+++
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y  110 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY  110 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence            566788999999999999999999999999999876654   89999999999999999999999999998743 34667


Q ss_pred             HHHHHHHHcC---------------C---hHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHH
Q 009850          121 ILLDLYKRCG---------------R---LDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNL  182 (524)
Q Consensus       121 ~lg~~~~~~g---------------~---~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~L  182 (524)
                      .+|.++...+               +   ..+|+..|++.++..|.+.....     +......+    .-.-+.--+..
T Consensus       111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~-----A~~rl~~l----~~~la~~e~~i  181 (243)
T PRK10866        111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTD-----ATKRLVFL----KDRLAKYELSV  181 (243)
T ss_pred             HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHH-----HHHHHHHH----HHHHHHHHHHH
Confidence            7776654443               1   35678889998888765433221     10000000    01112234578


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCcHH----HHHHHHHHHHcCCHHHHHHHHHH
Q 009850          183 GWALMQQNNYIEAEDAYRRALSIAPDNNK----MCNLGICLMKQGRIGEAKETLRR  234 (524)
Q Consensus       183 g~~~~~~g~~~eAi~~~~~Al~l~P~~~~----~~~Lg~~~~~~G~~~eA~~~~~~  234 (524)
                      |..|.+.|.|..|+.-++.+++.-|+.+.    ++.++.+|..+|..++|..+...
T Consensus       182 a~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~  237 (243)
T PRK10866        182 AEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI  237 (243)
T ss_pred             HHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            99999999999999999999999998754    78899999999999999887764

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=99.07  E-value=3.6e-10  Score=111.61  Aligned_cols=208  Identities=18%  Similarity=0.149  Sum_probs=141.5

Q ss_pred             chhhhhhhHHHHhcCCCC-----hHHHHHHHHHHHHcCChHHHHHHHHH------HHHcCCCcHHHHHHHHHHHHHcCCH
Q 009850           28 VSRTRSDSFHAIHKVPVG-----DTPYVRAKNVQLVDKDPEKAIPLFWA------AINAGDRVDSALKDMAIVMKQQNRA   96 (524)
Q Consensus        28 ~l~~~~~~~~~~~~~p~~-----~~~~~~lg~~~~~~g~~~~Ai~~~~~------al~~~p~~~~a~~~La~~~~~~g~~   96 (524)
                      ..+.-...|++....+..     ...|..||+.|+..++|++|+++-..      .+.-.-..+.+--+||.++..+|.|
T Consensus        32 dcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~f  111 (639)
T KOG1130|consen   32 DCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAF  111 (639)
T ss_pred             chhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhccc
Confidence            344455556666555543     34688999999999999999987543      3334656667778899999999999


Q ss_pred             HHHHHHHHHHHHhCC----CcHHHHHHHHHHHHHHHcCC--------------------hHHHHHHHHHHHHHh------
Q 009850           97 EEAIEAIKSLRSRCS----DQAQESLDNILLDLYKRCGR--------------------LDDQIALLKHKLYLI------  146 (524)
Q Consensus        97 ~eAi~~~~~al~~~p----~~~~~~l~~~lg~~~~~~g~--------------------~~eA~~~~~~al~l~------  146 (524)
                      ++|+.+..+-+.+..    .-....+++.+|.+|...|+                    ++.|.++|..-+++.      
T Consensus       112 deA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr  191 (639)
T KOG1130|consen  112 DEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDR  191 (639)
T ss_pred             chHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence            999988887655443    22334677888888877665                    456788888777664      


Q ss_pred             --------hccHhhhc-ccHHHHHHH-hHHHHHhcCC----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----CC
Q 009850          147 --------QQGLAFNG-KRTKTARSQ-GKKFQVSVEQ----EATRLLGNLGWALMQQNNYIEAEDAYRRALSIA----PD  208 (524)
Q Consensus       147 --------~~~~~~~~-~~~~~a~~~-~~~~~~~~~p----~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~----P~  208 (524)
                              +.+..+.- +.+..+... ...+.+...-    ..-.++.++|+++.-.|+++.|+++|+..+.+.    ..
T Consensus       192 ~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r  271 (639)
T KOG1130|consen  192 LAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNR  271 (639)
T ss_pred             HhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcch
Confidence                    11111111 222322222 2222222221    124689999999999999999999999977653    22


Q ss_pred             cHH---HHHHHHHHHHcCCHHHHHHHHHHh
Q 009850          209 NNK---MCNLGICLMKQGRIGEAKETLRRV  235 (524)
Q Consensus       209 ~~~---~~~Lg~~~~~~G~~~eA~~~~~~a  235 (524)
                      ...   .|.||..|.-+.+++.||.++++-
T Consensus       272 ~vEAQscYSLgNtytll~e~~kAI~Yh~rH  301 (639)
T KOG1130|consen  272 TVEAQSCYSLGNTYTLLKEVQKAITYHQRH  301 (639)
T ss_pred             hHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            222   788999999999999999999884

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.06  E-value=3.2e-08  Score=93.45  Aligned_cols=176  Identities=16%  Similarity=0.089  Sum_probs=128.7

Q ss_pred             ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-HHHHH
Q 009850           45 GDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDR---VDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQ-ESLDN  120 (524)
Q Consensus        45 ~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~---~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~-~~l~~  120 (524)
                      .++.++..|...+..|+|.+|+..|++++...|.   ...+.+.+|.+++..|++++|+..+++.+..+|+++. ..+++
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y   83 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY   83 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence            4567899999999999999999999999998665   5678999999999999999999999999999997643 35666


Q ss_pred             HHHHHHHHc-----------CChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHc
Q 009850          121 ILLDLYKRC-----------GRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQ  189 (524)
Q Consensus       121 ~lg~~~~~~-----------g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~  189 (524)
                      .+|.++...           +...+|+..|+..+...|.+.....     +......+    ...-..--+.+|..|++.
T Consensus        84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~-----A~~~l~~l----~~~la~~e~~ia~~Y~~~  154 (203)
T PF13525_consen   84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEE-----AKKRLAEL----RNRLAEHELYIARFYYKR  154 (203)
T ss_dssp             HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHH-----HHHHHHHH----HHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHH-----HHHHHHHH----HHHHHHHHHHHHHHHHHc
Confidence            677765443           3345788889988888655443221     10000000    001123346789999999


Q ss_pred             CCHHHHHHHHHHHHhhCCCcHH----HHHHHHHHHHcCCHHHHH
Q 009850          190 NNYIEAEDAYRRALSIAPDNNK----MCNLGICLMKQGRIGEAK  229 (524)
Q Consensus       190 g~~~eAi~~~~~Al~l~P~~~~----~~~Lg~~~~~~G~~~eA~  229 (524)
                      |.|..|+..|+.+++..|+...    +..++.+|.++|..+.|.
T Consensus       155 ~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~  198 (203)
T PF13525_consen  155 GKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD  198 (203)
T ss_dssp             T-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             ccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence            9999999999999999999866    788999999999988554

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.05  E-value=1.6e-08  Score=112.25  Aligned_cols=171  Identities=16%  Similarity=0.097  Sum_probs=122.9

Q ss_pred             HHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcH-------------------HHHHHHHHHHHHcCCHHH
Q 009850           38 AIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVD-------------------SALKDMAIVMKQQNRAEE   98 (524)
Q Consensus        38 ~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~-------------------~a~~~La~~~~~~g~~~e   98 (524)
                      .+...|.....|+.+|.+++..+++.+|...  .++...+.+.                   .+++.||.||.++|++++
T Consensus        57 ~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~k  134 (906)
T PRK14720         57 HLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKK  134 (906)
T ss_pred             HHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHH
Confidence            4456788889999999999999988888776  6666655555                   899999999999999999


Q ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHH-HhHHHHHhcCCCc--
Q 009850           99 AIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARS-QGKKFQVSVEQEA--  175 (524)
Q Consensus        99 Ai~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~-~~~~~~~~~~p~~--  175 (524)
                      |...|+++++.+|+++  .+.+.+|..|... +.++|++++.+|+...-.     .+.+..+.. ..+.  ...+|++  
T Consensus       135 a~~~yer~L~~D~~n~--~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~-----~kq~~~~~e~W~k~--~~~~~~d~d  204 (906)
T PRK14720        135 LKGVWERLVKADRDNP--EIVKKLATSYEEE-DKEKAITYLKKAIYRFIK-----KKQYVGIEEIWSKL--VHYNSDDFD  204 (906)
T ss_pred             HHHHHHHHHhcCcccH--HHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHh-----hhcchHHHHHHHHH--HhcCcccch
Confidence            9999999999999998  7889999999988 999999999999987310     111111111 0000  0112222  


Q ss_pred             ------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHH
Q 009850          176 ------------------TRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLM  220 (524)
Q Consensus       176 ------------------~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~  220 (524)
                                        ...+.-+=..|...++|++++.+++.+|+++|++.. ...++.||.
T Consensus       205 ~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~  268 (906)
T PRK14720        205 FFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK  268 (906)
T ss_pred             HHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence                              233333335666666777777777777777777666 666666665

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=99.05  E-value=7.4e-09  Score=110.63  Aligned_cols=142  Identities=16%  Similarity=0.124  Sum_probs=116.0

Q ss_pred             cCCCChHHH--HHHHHHHHHcCC---hHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC--------CHHHHHHHHHHHH
Q 009850           41 KVPVGDTPY--VRAKNVQLVDKD---PEKAIPLFWAAINAGDRVDSALKDMAIVMKQQN--------RAEEAIEAIKSLR  107 (524)
Q Consensus        41 ~~p~~~~~~--~~lg~~~~~~g~---~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g--------~~~eAi~~~~~al  107 (524)
                      ..|.+.++|  +..|..++..++   +.+|+.+|+++++++|+++.++-.++.++....        +...+....++++
T Consensus       332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~  411 (517)
T PRK10153        332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV  411 (517)
T ss_pred             cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence            345555555  677877777665   789999999999999999999999888876642        2445666666666


Q ss_pred             Hh--CCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHH
Q 009850          108 SR--CSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWA  185 (524)
Q Consensus       108 ~~--~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~  185 (524)
                      .+  +|.++  .++..+|..+...|++++|...+++++.+                          +| +..+|..+|.+
T Consensus       412 al~~~~~~~--~~~~ala~~~~~~g~~~~A~~~l~rAl~L--------------------------~p-s~~a~~~lG~~  462 (517)
T PRK10153        412 ALPELNVLP--RIYEILAVQALVKGKTDEAYQAINKAIDL--------------------------EM-SWLNYVLLGKV  462 (517)
T ss_pred             hcccCcCCh--HHHHHHHHHHHhcCCHHHHHHHHHHHHHc--------------------------CC-CHHHHHHHHHH
Confidence            64  45555  67777888888899999999999999999                          78 47899999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCcHH
Q 009850          186 LMQQNNYIEAEDAYRRALSIAPDNNK  211 (524)
Q Consensus       186 ~~~~g~~~eAi~~~~~Al~l~P~~~~  211 (524)
                      +...|++++|++.|++|+.++|.++.
T Consensus       463 ~~~~G~~~eA~~~~~~A~~L~P~~pt  488 (517)
T PRK10153        463 YELKGDNRLAADAYSTAFNLRPGENT  488 (517)
T ss_pred             HHHcCCHHHHHHHHHHHHhcCCCCch
Confidence            99999999999999999999999987

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.04  E-value=1.2e-08  Score=93.73  Aligned_cols=125  Identities=14%  Similarity=0.165  Sum_probs=88.6

Q ss_pred             HHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCC---cHHHHHHH
Q 009850          106 LRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQE---ATRLLGNL  182 (524)
Q Consensus       106 al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~---~~~a~~~L  182 (524)
                      ....+++......++.+|..+...|++++|+.+|++++..                          .|+   ...++.++
T Consensus        25 ~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------------------------~~~~~~~~~~~~~l   78 (172)
T PRK02603         25 ILPINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKL--------------------------EEDPNDRSYILYNM   78 (172)
T ss_pred             HcccccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------------------------hhccchHHHHHHHH
Confidence            3333333333456677788888888888888888888776                          222   34678888


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCC
Q 009850          183 GWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLK  261 (524)
Q Consensus       183 g~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p  261 (524)
                      |.++...|++++|+.+|++++...|++.. +..+|.++...|+...+...++.+..       .+..|++.+++++...|
T Consensus        79 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~-------~~~~A~~~~~~a~~~~p  151 (172)
T PRK02603         79 GIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEA-------LFDKAAEYWKQAIRLAP  151 (172)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHH-------HHHHHHHHHHHHHhhCc
Confidence            88888888888888888888888888877 77888888887776666555554432       13456667777777777


Q ss_pred             CC
Q 009850          262 DL  263 (524)
Q Consensus       262 ~~  263 (524)
                      +.
T Consensus       152 ~~  153 (172)
T PRK02603        152 NN  153 (172)
T ss_pred             hh
Confidence            65

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.04  E-value=7.2e-09  Score=88.19  Aligned_cols=100  Identities=16%  Similarity=0.081  Sum_probs=91.3

Q ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-HHHHHH
Q 009850           46 DTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRV---DSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQ-ESLDNI  121 (524)
Q Consensus        46 ~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~---~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~-~~l~~~  121 (524)
                      ++.++.+|..+...|++++|+..|.+++...|++   ..+++.+|.++...|++++|+.+|++++..+|++.. ..++..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK   81 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence            4578999999999999999999999999998876   578999999999999999999999999999987532 356788


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHH
Q 009850          122 LLDLYKRCGRLDDQIALLKHKLYL  145 (524)
Q Consensus       122 lg~~~~~~g~~~eA~~~~~~al~l  145 (524)
                      +|.++...|++++|+..+++++..
T Consensus        82 ~~~~~~~~~~~~~A~~~~~~~~~~  105 (119)
T TIGR02795        82 LGMSLQELGDKEKAKATLQQVIKR  105 (119)
T ss_pred             HHHHHHHhCChHHHHHHHHHHHHH
Confidence            999999999999999999999998

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PLN03077 Protein ECB2; Provisional

Probab=99.04  E-value=4e-08  Score=112.85  Aligned_cols=254  Identities=9%  Similarity=0.036  Sum_probs=149.2

Q ss_pred             cchhhhhhhHHHHhcC--CCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHcCCHHHHHHHH
Q 009850           27 GVSRTRSDSFHAIHKV--PVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGD-RVDSALKDMAIVMKQQNRAEEAIEAI  103 (524)
Q Consensus        27 ~~l~~~~~~~~~~~~~--p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p-~~~~a~~~La~~~~~~g~~~eAi~~~  103 (524)
                      +....+...|......  ..+...|..+-..+...|++++|.+.+..+++... .+..++..|...|.+.|++++|.+.|
T Consensus       368 g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf  447 (857)
T PLN03077        368 GLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVF  447 (857)
T ss_pred             CCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHH
Confidence            3445555555544333  23445677777788999999999999999998753 35677889999999999999999999


Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh-hccHhhhc--------ccHHHHHHH-hHHHHHhcCC
Q 009850          104 KSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLI-QQGLAFNG--------KRTKTARSQ-GKKFQVSVEQ  173 (524)
Q Consensus       104 ~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~-~~~~~~~~--------~~~~~a~~~-~~~~~~~~~p  173 (524)
                      ++...  ++.   ..|+.+...|...|++++|+..|++++... +....+..        ...+..... ......... 
T Consensus       448 ~~m~~--~d~---vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~-  521 (857)
T PLN03077        448 HNIPE--KDV---ISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIG-  521 (857)
T ss_pred             HhCCC--CCe---eeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCC-
Confidence            98643  232   466788888999999999999999987432 11111100        111111111 111111111 


Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHcCCHHHHHHHHHHhccc--ccCCC--------
Q 009850          174 EATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPA--VADGP--------  243 (524)
Q Consensus       174 ~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~~~~Lg~~~~~~G~~~eA~~~~~~a~~~--~~~~~--------  243 (524)
                      .+..+++.|-..|.+.|++++|...|+..   .|+...|..+...|.+.|+.++|+..|++....  .|+..        
T Consensus       522 ~~~~~~naLi~~y~k~G~~~~A~~~f~~~---~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a  598 (857)
T PLN03077        522 FDGFLPNALLDLYVRCGRMNYAWNQFNSH---EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCA  598 (857)
T ss_pred             ccceechHHHHHHHHcCCHHHHHHHHHhc---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHH
Confidence            22334445555556666666666665554   232222555666666666666666666554221  12211        


Q ss_pred             ----cCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHhhc
Q 009850          244 ----RGVDSHLKAYERAQQM---LKDLESEMMNKGGDRVEQSRLFDAFLGSSSI  290 (524)
Q Consensus       244 ----~~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~a  290 (524)
                          |..+++.+.|+.....   .|+ ...|..+...+.+.|++++|...++..
T Consensus       599 ~~~~g~v~ea~~~f~~M~~~~gi~P~-~~~y~~lv~~l~r~G~~~eA~~~~~~m  651 (857)
T PLN03077        599 CSRSGMVTQGLEYFHSMEEKYSITPN-LKHYACVVDLLGRAGKLTEAYNFINKM  651 (857)
T ss_pred             HhhcChHHHHHHHHHHHHHHhCCCCc-hHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence                4455555555555422   222 234555566666666666666665554

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.03  E-value=1.1e-08  Score=97.58  Aligned_cols=229  Identities=13%  Similarity=0.048  Sum_probs=159.8

Q ss_pred             HHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHH
Q 009850           56 QLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQ  135 (524)
Q Consensus        56 ~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA  135 (524)
                      +++..+|..||+++..-.+.+|.+...+..||.||+...+|..|..+|++.-.+.|....+.++.  ++.++..+.+.+|
T Consensus        20 lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~--AQSLY~A~i~ADA   97 (459)
T KOG4340|consen   20 LIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQ--AQSLYKACIYADA   97 (459)
T ss_pred             HHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH--HHHHHHhcccHHH
Confidence            37888999999999999999999999999999999999999999999999999999887555544  6678889999999


Q ss_pred             HHHHHHHHHHhhccHhhhcccHHHHHHHhH------HHHHhcCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 009850          136 IALLKHKLYLIQQGLAFNGKRTKTARSQGK------KFQVSVEQ--EATRLLGNLGWALMQQNNYIEAEDAYRRALSIAP  207 (524)
Q Consensus       136 ~~~~~~al~l~~~~~~~~~~~~~~a~~~~~------~~~~~~~p--~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P  207 (524)
                      +..........  .+.-..-..+++..+..      ...+..-|  ++++...+.|.++++.|+|++|++-|+.|++...
T Consensus        98 LrV~~~~~D~~--~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsG  175 (459)
T KOG4340|consen   98 LRVAFLLLDNP--ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSG  175 (459)
T ss_pred             HHHHHHhcCCH--HHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcC
Confidence            88776543210  00000001111111110      01122234  5688999999999999999999999999999999


Q ss_pred             CcHH-HHHHHHHHHHcCCHHHHHHHHHHhccc----ccCCC-cCHHHH--HHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Q 009850          208 DNNK-MCNLGICLMKQGRIGEAKETLRRVKPA----VADGP-RGVDSH--LKAYERAQQML-KDLESEMMNKGGDRVEQS  278 (524)
Q Consensus       208 ~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~----~~~~~-~~~~~A--~~~~~~al~~~-p~~~~a~~~lg~~~~~~g  278 (524)
                      -++- -++++.|+.+.|+++.|+.+...+...    +|+-. |..-+.  .......+.+. ....++....+-++.+.|
T Consensus       176 yqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~  255 (459)
T KOG4340|consen  176 YQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLR  255 (459)
T ss_pred             CCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcc
Confidence            8888 899999999999999999998876432    22211 110000  00000000000 011234445567888999


Q ss_pred             CHHHHHHHHh
Q 009850          279 RLFDAFLGSS  288 (524)
Q Consensus       279 ~~~eAi~~~~  288 (524)
                      +++.|.+.+.
T Consensus       256 n~eAA~eaLt  265 (459)
T KOG4340|consen  256 NYEAAQEALT  265 (459)
T ss_pred             cHHHHHHHhh
Confidence            9988877654

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.02  E-value=9e-09  Score=99.39  Aligned_cols=123  Identities=20%  Similarity=0.212  Sum_probs=104.2

Q ss_pred             ChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcC---ChHHHHH
Q 009850           61 DPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCG---RLDDQIA  137 (524)
Q Consensus        61 ~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g---~~~eA~~  137 (524)
                      ..+.-+.-++.-+..+|++.+-|..||.+|+.+|+++.|...|.+++++.|+++  .++..+|.++..+.   ...++..
T Consensus       137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~--~~~~g~aeaL~~~a~~~~ta~a~~  214 (287)
T COG4235         137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNP--EILLGLAEALYYQAGQQMTAKARA  214 (287)
T ss_pred             cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHhcCCcccHHHHH
Confidence            366777788888888999999999999999999999999999999999999998  55566666654432   3577888


Q ss_pred             HHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q 009850          138 LLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK  211 (524)
Q Consensus       138 ~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~  211 (524)
                      .|++++.+                          +|.+..+++.||..++..|+|.+|+..++..+...|.+..
T Consensus       215 ll~~al~~--------------------------D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~  262 (287)
T COG4235         215 LLRQALAL--------------------------DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP  262 (287)
T ss_pred             HHHHHHhc--------------------------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence            99999988                          8999999999999999999999999999999998887765

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.00  E-value=1.2e-08  Score=93.19  Aligned_cols=127  Identities=12%  Similarity=0.084  Sum_probs=93.0

Q ss_pred             HcCChHHHHHHHHHHHHcCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHHHcCChHH
Q 009850           58 VDKDPEKAIPLFWAAINAGDRV--DSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQA-QESLDNILLDLYKRCGRLDD  134 (524)
Q Consensus        58 ~~g~~~~Ai~~~~~al~~~p~~--~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~-~~~l~~~lg~~~~~~g~~~e  134 (524)
                      ..+.+..+...+...++.++..  ..+++.+|.++...|++++|+..|++++.+.|+.. ...++..+|.+|...|++++
T Consensus        11 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~e   90 (168)
T CHL00033         11 IDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTK   90 (168)
T ss_pred             cccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHH
Confidence            3344566666665555555444  56678888888888888888888888888876532 12467788888888888888


Q ss_pred             HHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHH-------HcCCHH-------HHHHHHH
Q 009850          135 QIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALM-------QQNNYI-------EAEDAYR  200 (524)
Q Consensus       135 A~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~-------~~g~~~-------eAi~~~~  200 (524)
                      |+..|++++.+                          +|.....+.++|.++.       ..|+++       +|+.+|+
T Consensus        91 A~~~~~~Al~~--------------------------~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~  144 (168)
T CHL00033         91 ALEYYFQALER--------------------------NPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWK  144 (168)
T ss_pred             HHHHHHHHHHh--------------------------CcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHH
Confidence            88888888887                          6777777777777777       677766       6666666


Q ss_pred             HHHhhCCCcH
Q 009850          201 RALSIAPDNN  210 (524)
Q Consensus       201 ~Al~l~P~~~  210 (524)
                      +++..+|.+.
T Consensus       145 ~a~~~~p~~~  154 (168)
T CHL00033        145 QAIALAPGNY  154 (168)
T ss_pred             HHHHhCcccH
Confidence            7777787654

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.00  E-value=1.1e-08  Score=93.83  Aligned_cols=105  Identities=15%  Similarity=0.210  Sum_probs=57.2

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccH
Q 009850           79 VDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQ-ESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRT  157 (524)
Q Consensus        79 ~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~-~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~  157 (524)
                      ...+++.+|.++...|++++|+.+|++++...|+... ..++..+|.++...|++++|+..|++++..            
T Consensus        34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------------  101 (172)
T PRK02603         34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL------------  101 (172)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------
Confidence            3344455555555555555555555555554443211 134445555555555555555555555554            


Q ss_pred             HHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHhhCCCc
Q 009850          158 KTARSQGKKFQVSVEQEATRLLGNLGWALMQQNN--------------YIEAEDAYRRALSIAPDN  209 (524)
Q Consensus       158 ~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~--------------~~eAi~~~~~Al~l~P~~  209 (524)
                                    .|++...+..+|.++...|+              +++|++++++++..+|++
T Consensus       102 --------------~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~  153 (172)
T PRK02603        102 --------------NPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN  153 (172)
T ss_pred             --------------CcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence                          45555555555555555444              577778888888878776

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.00  E-value=1e-07  Score=92.31  Aligned_cols=171  Identities=12%  Similarity=0.029  Sum_probs=133.7

Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhccc
Q 009850           78 RVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQ-ESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKR  156 (524)
Q Consensus        78 ~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~-~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~  156 (524)
                      ..+..++..|..+...|+|++|+..|++++...|..+. ......+|.+|.+.+++++|+..|++.++.++.        
T Consensus        30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~--------  101 (243)
T PRK10866         30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT--------  101 (243)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC--------
Confidence            46777889999999999999999999999999998754 345678899999999999999999999999433        


Q ss_pred             HHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcC---------------C---HHHHHHHHHHHHhhCCCcHH-------
Q 009850          157 TKTARSQGKKFQVSVEQEATRLLGNLGWALMQQN---------------N---YIEAEDAYRRALSIAPDNNK-------  211 (524)
Q Consensus       157 ~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g---------------~---~~eAi~~~~~Al~l~P~~~~-------  211 (524)
                                     +|+.+.+++.+|.++...+               +   ..+|+..|++.+...|+..-       
T Consensus       102 ---------------~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~r  166 (243)
T PRK10866        102 ---------------HPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKR  166 (243)
T ss_pred             ---------------CCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHH
Confidence                           4455789999998875554               1   35788999999999998721       


Q ss_pred             -----------HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 009850          212 -----------MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRL  280 (524)
Q Consensus       212 -----------~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~  280 (524)
                                 -...|..|.+.|.|..|+.-++.++..+|+..                  ...++++.++..|..+|..
T Consensus       167 l~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~------------------~~~eal~~l~~ay~~lg~~  228 (243)
T PRK10866        167 LVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQ------------------ATRDALPLMENAYRQLQLN  228 (243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCc------------------hHHHHHHHHHHHHHHcCCh
Confidence                       23456667777777777777775554444432                  2346788899999999999


Q ss_pred             HHHHHHHhh
Q 009850          281 FDAFLGSSS  289 (524)
Q Consensus       281 ~eAi~~~~~  289 (524)
                      ++|......
T Consensus       229 ~~a~~~~~~  237 (243)
T PRK10866        229 AQADKVAKI  237 (243)
T ss_pred             HHHHHHHHH
Confidence            999876543

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.99  E-value=2.2e-09  Score=82.50  Aligned_cols=67  Identities=19%  Similarity=0.189  Sum_probs=62.4

Q ss_pred             ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 009850           45 GDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQN-RAEEAIEAIKSLRSRCS  111 (524)
Q Consensus        45 ~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g-~~~eAi~~~~~al~~~p  111 (524)
                      .+..|+.+|.+++..|++++|+.+|.++++.+|+++.+++++|.++..+| ++++|+..++++++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            35679999999999999999999999999999999999999999999999 79999999999999987

...

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.99  E-value=1.3e-08  Score=86.70  Aligned_cols=106  Identities=15%  Similarity=0.202  Sum_probs=90.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHH
Q 009850           80 DSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQ-ESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTK  158 (524)
Q Consensus        80 ~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~-~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~  158 (524)
                      ++.++.+|..+...|++++|+..|.+++..+|++.. ...++.+|.++...|++++|+..|++++..             
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------------   68 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKK-------------   68 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-------------
Confidence            457888999999999999999999999998887532 256678899999999999999999999887             


Q ss_pred             HHHHHhHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q 009850          159 TARSQGKKFQVSVEQEA---TRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK  211 (524)
Q Consensus       159 ~a~~~~~~~~~~~~p~~---~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~  211 (524)
                                   .|++   +.++..+|.++...|++++|+.+|++++...|++..
T Consensus        69 -------------~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~  111 (119)
T TIGR02795        69 -------------YPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSA  111 (119)
T ss_pred             -------------CCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence                         5553   678899999999999999999999999999998765

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.98  E-value=3.5e-08  Score=87.92  Aligned_cols=128  Identities=22%  Similarity=0.146  Sum_probs=100.5

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-HHHHHHHHH
Q 009850           49 YVRAKNVQLVDKDPEKAIPLFWAAINAGDRV---DSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQ-ESLDNILLD  124 (524)
Q Consensus        49 ~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~---~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~-~~l~~~lg~  124 (524)
                      .|......+..++...+...++..+...|+.   ..+.+.+|.++...|++++|+..|+.++...|+... ..+...++.
T Consensus        14 ~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~   93 (145)
T PF09976_consen   14 LYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR   93 (145)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence            3444455557889999988899999888887   556778899999999999999999999988765532 346667888


Q ss_pred             HHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009850          125 LYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRAL  203 (524)
Q Consensus       125 ~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al  203 (524)
                      ++...|++++|+..++... -                          .+-.+.++..+|.+|...|++++|+..|++|+
T Consensus        94 ~~~~~~~~d~Al~~L~~~~-~--------------------------~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen   94 ILLQQGQYDEALATLQQIP-D--------------------------EAFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHcCCHHHHHHHHHhcc-C--------------------------cchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            9999999999999886521 1                          24446678889999999999999999998875

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.96  E-value=1.2e-07  Score=89.56  Aligned_cols=162  Identities=19%  Similarity=0.157  Sum_probs=122.3

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccH
Q 009850           79 VDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQ-ESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRT  157 (524)
Q Consensus        79 ~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~-~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~  157 (524)
                      .+..++..|..++..|+|.+|+..|++++...|.... ..+...+|.++...|++++|+..|++.+...|.         
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~---------   74 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPN---------   74 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT---------
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---------
Confidence            5678999999999999999999999999999997533 467788999999999999999999999998433         


Q ss_pred             HHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhhCCCcHH---------------
Q 009850          158 KTARSQGKKFQVSVEQEATRLLGNLGWALMQQN-----------NYIEAEDAYRRALSIAPDNNK---------------  211 (524)
Q Consensus       158 ~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g-----------~~~eAi~~~~~Al~l~P~~~~---------------  211 (524)
                                    +|....+++.+|.+++.+.           ...+|+..|+..+...|++..               
T Consensus        75 --------------~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~l  140 (203)
T PF13525_consen   75 --------------SPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRL  140 (203)
T ss_dssp             ---------------TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHH
T ss_pred             --------------CcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHH
Confidence                          3344678999999876653           345899999999999999811               


Q ss_pred             ---HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHH
Q 009850          212 ---MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLE---SEMMNKGGDRVEQSRLFDAF  284 (524)
Q Consensus       212 ---~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~---~a~~~lg~~~~~~g~~~eAi  284 (524)
                         -+.+|..|.+.|.+..|+..++.+                     ++.-|+..   .++..++..|..+|....|.
T Consensus       141 a~~e~~ia~~Y~~~~~y~aA~~r~~~v---------------------~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~  198 (203)
T PF13525_consen  141 AEHELYIARFYYKRGKYKAAIIRFQYV---------------------IENYPDTPAAEEALARLAEAYYKLGLKQAAD  198 (203)
T ss_dssp             HHHHHHHHHHHHCTT-HHHHHHHHHHH---------------------HHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHH---------------------HHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence               245677778888888888888754                     44445443   46788888999999888554

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.95  E-value=8.5e-09  Score=102.37  Aligned_cols=162  Identities=20%  Similarity=0.244  Sum_probs=125.5

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 009850           48 PYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYK  127 (524)
Q Consensus        48 ~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~  127 (524)
                      .....|.++...|++++|+..+.+.     ++.++......+|..+++++.|.+.++.+.+.+.+.....+  ..+.+..
T Consensus       104 ~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qL--a~awv~l  176 (290)
T PF04733_consen  104 VQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQL--AEAWVNL  176 (290)
T ss_dssp             HHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHH--HHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHH--HHHHHHH
Confidence            3456677888889999999988764     67888888899999999999999999999988887763333  3333443


Q ss_pred             HcC--ChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 009850          128 RCG--RLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSI  205 (524)
Q Consensus       128 ~~g--~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l  205 (524)
                      ..|  .+.+|.-.|+.....                          .+.++..++.++.+++.+|+|++|...+.+++..
T Consensus       177 ~~g~e~~~~A~y~f~El~~~--------------------------~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~  230 (290)
T PF04733_consen  177 ATGGEKYQDAFYIFEELSDK--------------------------FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK  230 (290)
T ss_dssp             HHTTTCCCHHHHHHHHHHCC--------------------------S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC
T ss_pred             HhCchhHHHHHHHHHHHHhc--------------------------cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence            444  699999999986544                          4667889999999999999999999999999999


Q ss_pred             CCCcHH-HHHHHHHHHHcCCH-HHHHHHHHHhcccccCC
Q 009850          206 APDNNK-MCNLGICLMKQGRI-GEAKETLRRVKPAVADG  242 (524)
Q Consensus       206 ~P~~~~-~~~Lg~~~~~~G~~-~eA~~~~~~a~~~~~~~  242 (524)
                      +|.++. +.|++.|...+|+. +.+.+++.+....+|..
T Consensus       231 ~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h  269 (290)
T PF04733_consen  231 DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNH  269 (290)
T ss_dssp             -CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTS
T ss_pred             ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCC
Confidence            999999 99999999999998 55666777554444443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.95  E-value=1.2e-08  Score=81.42  Aligned_cols=95  Identities=18%  Similarity=0.167  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Q 009850           49 YVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKR  128 (524)
Q Consensus        49 ~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~  128 (524)
                      ++.+|..++..|++++|+..++++++..|.+..++..+|.++...|++++|+..+++++...|.+.  ..+..++.++..
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~   80 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA--KAYYNLGLAYYK   80 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch--hHHHHHHHHHHH
Confidence            455555555555566665555555555555555555555555555555555555555555555443  344455555555


Q ss_pred             cCChHHHHHHHHHHHHH
Q 009850          129 CGRLDDQIALLKHKLYL  145 (524)
Q Consensus       129 ~g~~~eA~~~~~~al~l  145 (524)
                      .|++++|...+.+++..
T Consensus        81 ~~~~~~a~~~~~~~~~~   97 (100)
T cd00189          81 LGKYEEALEAYEKALEL   97 (100)
T ss_pred             HHhHHHHHHHHHHHHcc
Confidence            55555555555555443

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.93  E-value=1.3e-08  Score=81.09  Aligned_cols=72  Identities=15%  Similarity=0.095  Sum_probs=54.5

Q ss_pred             hcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 009850           40 HKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCS  111 (524)
Q Consensus        40 ~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p  111 (524)
                      ...|.....++.+|.++...|++++|+.+|.+++...|.+..++..+|.++...|++++|...+.+++..+|
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~   99 (100)
T cd00189          28 ELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP   99 (100)
T ss_pred             hcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence            344555567777788888888888888888888877777777777788888888888888888777777665

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.93  E-value=4.6e-09  Score=79.71  Aligned_cols=65  Identities=18%  Similarity=0.131  Sum_probs=60.4

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 009850           50 VRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQA  114 (524)
Q Consensus        50 ~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~  114 (524)
                      +.+|..++..|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|+++
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            46899999999999999999999999999999999999999999999999999999999999874

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.92  E-value=7.7e-08  Score=95.65  Aligned_cols=213  Identities=18%  Similarity=0.139  Sum_probs=144.3

Q ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-----C-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----HH
Q 009850           46 DTPYVRAKNVQLVDKDPEKAIPLFWAAINAG-----D-RVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQ----AQ  115 (524)
Q Consensus        46 ~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~-----p-~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~----~~  115 (524)
                      .+.|...|..|-..|++++|..+|.++....     + ....++...+.+|... ++++|+.+|++++.+.-..    ..
T Consensus        35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~a  113 (282)
T PF14938_consen   35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQA  113 (282)
T ss_dssp             HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHH
T ss_pred             HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHH
Confidence            4468889999999999999999999998752     1 2234566677777666 9999999999999875422    12


Q ss_pred             HHHHHHHHHHHHHc-CChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCC-cHHHHHHHHHHHHHcCCHH
Q 009850          116 ESLDNILLDLYKRC-GRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQE-ATRLLGNLGWALMQQNNYI  193 (524)
Q Consensus       116 ~~l~~~lg~~~~~~-g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~-~~~a~~~Lg~~~~~~g~~~  193 (524)
                      ..+...+|.+|... |++++|+++|++++.+....-                     .+. ...++..+|.++...|+|+
T Consensus       114 A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~---------------------~~~~a~~~~~~~A~l~~~l~~y~  172 (282)
T PF14938_consen  114 AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG---------------------SPHSAAECLLKAADLYARLGRYE  172 (282)
T ss_dssp             HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT----------------------HHHHHHHHHHHHHHHHHTT-HH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC---------------------ChhhHHHHHHHHHHHHHHhCCHH
Confidence            46778899999998 999999999999998832100                     111 1457889999999999999


Q ss_pred             HHHHHHHHHHhhCCCc------HH--HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHH
Q 009850          194 EAEDAYRRALSIAPDN------NK--MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLES  265 (524)
Q Consensus       194 eAi~~~~~Al~l~P~~------~~--~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~  265 (524)
                      +|+..|+++....-++      ..  +...+.|++..|+...|...+++....+|.-....+-                .
T Consensus       173 ~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~----------------~  236 (282)
T PF14938_consen  173 EAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREY----------------K  236 (282)
T ss_dssp             HHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHH----------------H
T ss_pred             HHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHH----------------H
Confidence            9999999998754222      22  5678889999999999999999765444332211111                1


Q ss_pred             HHHHHHHHH--HHcCCHHHHHHHHhhcccCCCC
Q 009850          266 EMMNKGGDR--VEQSRLFDAFLGSSSIWQPQPC  296 (524)
Q Consensus       266 a~~~lg~~~--~~~g~~~eAi~~~~~al~~~P~  296 (524)
                      ....+-.++  .....+.+|+..|..+-++++=
T Consensus       237 ~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~w  269 (282)
T PF14938_consen  237 FLEDLLEAYEEGDVEAFTEAVAEYDSISRLDNW  269 (282)
T ss_dssp             HHHHHHHHHHTT-CCCHHHHCHHHTTSS---HH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHcccCccHHH
Confidence            111121122  1235577888888887777653

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.91  E-value=4.9e-08  Score=95.10  Aligned_cols=233  Identities=18%  Similarity=0.099  Sum_probs=154.7

Q ss_pred             HHcCChHHHHHHHHHHHHcCCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHH
Q 009850           57 LVDKDPEKAIPLFWAAINAGDRVD-SALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQ  135 (524)
Q Consensus        57 ~~~g~~~~Ai~~~~~al~~~p~~~-~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA  135 (524)
                      +...||..|+..++-.+..+.+.. ..-..+|.|++.+|+|++|+..|.-+...+..++  .++..|+.+++-+|.|.+|
T Consensus        33 ls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~--el~vnLAcc~FyLg~Y~eA  110 (557)
T KOG3785|consen   33 LSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPA--ELGVNLACCKFYLGQYIEA  110 (557)
T ss_pred             HhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCc--ccchhHHHHHHHHHHHHHH
Confidence            567788888888887776654433 4555678888888888888888888777444333  6777888888888888888


Q ss_pred             HHHHHHHHHHhh-----ccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH
Q 009850          136 IALLKHKLYLIQ-----QGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNN  210 (524)
Q Consensus       136 ~~~~~~al~l~~-----~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~  210 (524)
                      ...-.++-...-     -.++..-...+....+...+     .+..+-...|+.+++..-.|++|++.|++++.-+|+..
T Consensus       111 ~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~L-----qD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~  185 (557)
T KOG3785|consen  111 KSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSL-----QDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYI  185 (557)
T ss_pred             HHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHH-----hhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhh
Confidence            777665532110     00000001112222222211     12234556777788888899999999999999999888


Q ss_pred             H-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCC---------------cCHHH----------------HH--------
Q 009850          211 K-MCNLGICLMKQGRIGEAKETLRRVKPAVADGP---------------RGVDS----------------HL--------  250 (524)
Q Consensus       211 ~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~---------------~~~~~----------------A~--------  250 (524)
                      . -.+++.||.++.=++-+.+.+.-.+..+|+..               ++..+                +.        
T Consensus       186 alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLV  265 (557)
T KOG3785|consen  186 ALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLV  265 (557)
T ss_pred             hhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeE
Confidence            8 67899999999999988888887777777765               11110                00        


Q ss_pred             --HHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCC
Q 009850          251 --KAYERAQQMLKD----LESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  299 (524)
Q Consensus       251 --~~~~~al~~~p~----~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~  299 (524)
                        +--+.+++..|.    .+++..++...|..+++..+|+...+   ..+|..+.
T Consensus       266 vFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~K---dl~PttP~  317 (557)
T KOG3785|consen  266 VFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCK---DLDPTTPY  317 (557)
T ss_pred             EEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHh---hcCCCChH
Confidence              011234444443    45788999999999999999987655   34555554

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.90  E-value=8.2e-09  Score=79.28  Aligned_cols=63  Identities=32%  Similarity=0.490  Sum_probs=59.0

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcC-CHHHHHHHHHHhcc
Q 009850          175 ATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQG-RIGEAKETLRRVKP  237 (524)
Q Consensus       175 ~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G-~~~eA~~~~~~a~~  237 (524)
                      ++.+|..+|.+++..|+|++|+.+|.++++++|+++. |+++|.++..+| ++++|+..+++++.
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~   66 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK   66 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence            5779999999999999999999999999999999999 999999999999 79999999996543

...

>PRK11906 transcriptional regulator; Provisional

Probab=98.90  E-value=1.2e-07  Score=97.09  Aligned_cols=157  Identities=11%  Similarity=0.061  Sum_probs=132.6

Q ss_pred             HHHHHHHHHcCC---hHHHHHHHHHHH---HcCCCcHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCcH
Q 009850           50 VRAKNVQLVDKD---PEKAIPLFWAAI---NAGDRVDSALKDMAIVMKQQ---------NRAEEAIEAIKSLRSRCSDQA  114 (524)
Q Consensus        50 ~~lg~~~~~~g~---~~~Ai~~~~~al---~~~p~~~~a~~~La~~~~~~---------g~~~eAi~~~~~al~~~p~~~  114 (524)
                      +.+|...+..+.   .+.|+.+|.+++   .++|+.+.+|..++.|+...         ....+|..+.+++++++|.++
T Consensus       259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da  338 (458)
T PRK11906        259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDG  338 (458)
T ss_pred             HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCH
Confidence            677777766654   568999999999   89999999999999998865         235688999999999999998


Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH
Q 009850          115 QESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIE  194 (524)
Q Consensus       115 ~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~e  194 (524)
                        .+...+|.++...|+++.|...|++++.+                          +|+.+.+|+..|+++...|+.++
T Consensus       339 --~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--------------------------~Pn~A~~~~~~~~~~~~~G~~~~  390 (458)
T PRK11906        339 --KILAIMGLITGLSGQAKVSHILFEQAKIH--------------------------STDIASLYYYRALVHFHNEKIEE  390 (458)
T ss_pred             --HHHHHHHHHHHhhcchhhHHHHHHHHhhc--------------------------CCccHHHHHHHHHHHHHcCCHHH
Confidence              66678888888899999999999999999                          99999999999999999999999


Q ss_pred             HHHHHHHHHhhCCCcHH--HHHHHHHHHHcCCHHHHHHHHHH
Q 009850          195 AEDAYRRALSIAPDNNK--MCNLGICLMKQGRIGEAKETLRR  234 (524)
Q Consensus       195 Ai~~~~~Al~l~P~~~~--~~~Lg~~~~~~G~~~eA~~~~~~  234 (524)
                      |++.++++++++|....  ...+-.-.+--...++|+..|-+
T Consensus       391 a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (458)
T PRK11906        391 ARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYK  432 (458)
T ss_pred             HHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHHhh
Confidence            99999999999998766  33333313344567888888764

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.88  E-value=1.4e-07  Score=91.92  Aligned_cols=247  Identities=14%  Similarity=0.048  Sum_probs=156.1

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------------HhCCC
Q 009850           47 TPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLR--------------SRCSD  112 (524)
Q Consensus        47 ~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al--------------~~~p~  112 (524)
                      +.-..+|.+++..|+|++|+..|..+.+.+.-+.+.+.+||-|++-+|.|.+|...-.++-              +++..
T Consensus        58 ~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndE  137 (557)
T KOG3785|consen   58 SLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDE  137 (557)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcH
Confidence            4556789999999999999999999999877788999999999999999999988766531              11111


Q ss_pred             cHHH----------HHHHHHHHHHHHcCChHHHHHHHHHHHHHhhc--------cHhhhcc-cHHHHHHHhHHHHHhcCC
Q 009850          113 QAQE----------SLDNILLDLYKRCGRLDDQIALLKHKLYLIQQ--------GLAFNGK-RTKTARSQGKKFQVSVEQ  173 (524)
Q Consensus       113 ~~~~----------~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~--------~~~~~~~-~~~~a~~~~~~~~~~~~p  173 (524)
                      .-+.          .-...|+.+++..-.|.+|+..|++++.-++.        .+++... .+........- -+..-|
T Consensus       138 k~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~v-YL~q~p  216 (557)
T KOG3785|consen  138 KRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKV-YLRQFP  216 (557)
T ss_pred             HHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHH-HHHhCC
Confidence            1000          11124555566667789999999998865422        2233332 22222222221 133368


Q ss_pred             CcHHHHHHHHHHHHHc--CCHHHH----------------HHHHHH----------HHhhCCCc----HH-HHHHHHHHH
Q 009850          174 EATRLLGNLGWALMQQ--NNYIEA----------------EDAYRR----------ALSIAPDN----NK-MCNLGICLM  220 (524)
Q Consensus       174 ~~~~a~~~Lg~~~~~~--g~~~eA----------------i~~~~~----------Al~l~P~~----~~-~~~Lg~~~~  220 (524)
                      +++.+.+..+..+++.  |+..++                ...++.          |++.-|.-    +. ..||...|.
T Consensus       217 dStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL  296 (557)
T KOG3785|consen  217 DSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYL  296 (557)
T ss_pred             CcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeec
Confidence            8887877777766654  322221                111111          22222322    33 678888888


Q ss_pred             HcCCHHHHHHHHHHhcccccCCC-----------------------------------------c------------CHH
Q 009850          221 KQGRIGEAKETLRRVKPAVADGP-----------------------------------------R------------GVD  247 (524)
Q Consensus       221 ~~G~~~eA~~~~~~a~~~~~~~~-----------------------------------------~------------~~~  247 (524)
                      ++|+..+|+..+....|..|..+                                         |            .++
T Consensus       297 ~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFd  376 (557)
T KOG3785|consen  297 NQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFD  376 (557)
T ss_pred             ccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHH
Confidence            89999999888887655554432                                         1            112


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCC
Q 009850          248 SHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQ  294 (524)
Q Consensus       248 ~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~  294 (524)
                      ..+..+.......-++....++++..+...|.+.+|.+.|-++-..+
T Consensus       377 dVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~  423 (557)
T KOG3785|consen  377 DVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPE  423 (557)
T ss_pred             HHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChh
Confidence            22333333344445556677888999999999999988887765544

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.88  E-value=7.2e-07  Score=92.47  Aligned_cols=197  Identities=19%  Similarity=0.117  Sum_probs=135.2

Q ss_pred             HHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 009850           38 AIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQES  117 (524)
Q Consensus        38 ~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~  117 (524)
                      .+...|...++...--.+++..++|++|+...+.-....-.+ ...+..+.|+++++..++|+..++   ..++.+.  .
T Consensus        38 il~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~Yrlnk~Dealk~~~---~~~~~~~--~  111 (652)
T KOG2376|consen   38 ILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SFFFEKAYCEYRLNKLDEALKTLK---GLDRLDD--K  111 (652)
T ss_pred             HHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-hhhHHHHHHHHHcccHHHHHHHHh---cccccch--H
Confidence            345567888888888889999999999995444332222222 222689999999999999999999   3344443  4


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhc--ccHHHH-HHHhH-HHHHhcCCC-cHHHHHHHHHHHHHcCCH
Q 009850          118 LDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNG--KRTKTA-RSQGK-KFQVSVEQE-ATRLLGNLGWALMQQNNY  192 (524)
Q Consensus       118 l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~--~~~~~a-~~~~~-~~~~~~~p~-~~~a~~~Lg~~~~~~g~~  192 (524)
                      +....+++++++|+|++|+..|+..++-.........  .....+ ....+ .-.....|. +-+.++|.+.++...|+|
T Consensus       112 ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky  191 (652)
T KOG2376|consen  112 LLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKY  191 (652)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccH
Confidence            6677899999999999999999998765322111111  111111 11110 011122344 467899999999999999


Q ss_pred             HHHHHHHHHHHhhC-------CCc--------HH-HHHHHHHHHHcCCHHHHHHHHHHhccccc
Q 009850          193 IEAEDAYRRALSIA-------PDN--------NK-MCNLGICLMKQGRIGEAKETLRRVKPAVA  240 (524)
Q Consensus       193 ~eAi~~~~~Al~l~-------P~~--------~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~  240 (524)
                      .+|++.++.|+.+.       ..+        .. ...|+.++..+|+.++|...|...+...+
T Consensus       192 ~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~  255 (652)
T KOG2376|consen  192 NQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNP  255 (652)
T ss_pred             HHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcC
Confidence            99999999995432       111        11 56799999999999999999988754443

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.88  E-value=5.9e-07  Score=103.90  Aligned_cols=98  Identities=14%  Similarity=0.003  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----cHHHHH
Q 009850           48 PYVRAKNVQLVDKDPEKAIPLFWAAINAGDRV-----DSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSD----QAQESL  118 (524)
Q Consensus        48 ~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~-----~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~----~~~~~l  118 (524)
                      ....+|.++...|++++|...+++++...+..     ..++..+|.++...|++++|...+++++.....    ......
T Consensus       454 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~  533 (903)
T PRK04841        454 FNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWS  533 (903)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHH
Confidence            34457888899999999999999999854432     235677899999999999999999999876542    122345


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHH
Q 009850          119 DNILLDLYKRCGRLDDQIALLKHKLYL  145 (524)
Q Consensus       119 ~~~lg~~~~~~g~~~eA~~~~~~al~l  145 (524)
                      ...++.++...|++++|...+++++.+
T Consensus       534 ~~~la~~~~~~G~~~~A~~~~~~al~~  560 (903)
T PRK04841        534 LLQQSEILFAQGFLQAAYETQEKAFQL  560 (903)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            567889999999999999999999876

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.87  E-value=1.5e-06  Score=80.42  Aligned_cols=202  Identities=22%  Similarity=0.242  Sum_probs=168.0

Q ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 009850           46 DTPYVRAKNVQLVDKDPEKAIPLFWAAIN--AGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILL  123 (524)
Q Consensus        46 ~~~~~~lg~~~~~~g~~~~Ai~~~~~al~--~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg  123 (524)
                      ...+...+..+...+++..++..+...+.  ..+.....+..++..+...+++..++..+..++...+...  ......+
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  136 (291)
T COG0457          59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD--LAEALLA  136 (291)
T ss_pred             hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc--hHHHHHH
Confidence            46678888999999999999999999997  6888889999999999999999999999999999877653  2223334


Q ss_pred             H-HHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCC---CcHHHHHHHHHHHHHcCCHHHHHHHH
Q 009850          124 D-LYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQ---EATRLLGNLGWALMQQNNYIEAEDAY  199 (524)
Q Consensus       124 ~-~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p---~~~~a~~~Lg~~~~~~g~~~eAi~~~  199 (524)
                      . ++...|+++.|...|.+++..                          +|   .....+..++..+...+++++|+..+
T Consensus       137 ~~~~~~~~~~~~a~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~  190 (291)
T COG0457         137 LGALYELGDYEEALELYEKALEL--------------------------DPELNELAEALLALGALLEALGRYEEALELL  190 (291)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhc--------------------------CCCccchHHHHHHhhhHHHHhcCHHHHHHHH
Confidence            4 788999999999999999765                          44   34566677777788899999999999


Q ss_pred             HHHHhhCCC-cHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 009850          200 RRALSIAPD-NNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQ  277 (524)
Q Consensus       200 ~~Al~l~P~-~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~  277 (524)
                      .+++...+. ... +..++.++...+++.+|+..+.                     .++...|.....+..++..+...
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~  249 (291)
T COG0457         191 EKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYE---------------------KALELDPDNAEALYNLALLLLEL  249 (291)
T ss_pred             HHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHH---------------------HHHhhCcccHHHHhhHHHHHHHc
Confidence            999999998 566 8899999999998888888888                     56666666666778888877777


Q ss_pred             CCHHHHHHHHhhcccCCCC
Q 009850          278 SRLFDAFLGSSSIWQPQPC  296 (524)
Q Consensus       278 g~~~eAi~~~~~al~~~P~  296 (524)
                      +.+.++...+..++...|.
T Consensus       250 ~~~~~~~~~~~~~~~~~~~  268 (291)
T COG0457         250 GRYEEALEALEKALELDPD  268 (291)
T ss_pred             CCHHHHHHHHHHHHHhCcc
Confidence            8899999999999988886

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.86  E-value=1.1e-08  Score=82.12  Aligned_cols=80  Identities=29%  Similarity=0.439  Sum_probs=70.3

Q ss_pred             cCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 009850          129 CGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQE--ATRLLGNLGWALMQQNNYIEAEDAYRRALSIA  206 (524)
Q Consensus       129 ~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~--~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~  206 (524)
                      .|++++|+..|++++..                          +|.  +..+++.+|.+|++.|+|++|+..+++ +..+
T Consensus         2 ~~~y~~Ai~~~~k~~~~--------------------------~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~   54 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLEL--------------------------DPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD   54 (84)
T ss_dssp             TT-HHHHHHHHHHHHHH--------------------------HCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH
T ss_pred             CccHHHHHHHHHHHHHH--------------------------CCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC
Confidence            68999999999999998                          563  567888899999999999999999999 8888


Q ss_pred             CCcHH-HHHHHHHHHHcCCHHHHHHHHHHh
Q 009850          207 PDNNK-MCNLGICLMKQGRIGEAKETLRRV  235 (524)
Q Consensus       207 P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a  235 (524)
                      +.+.. ++.+|.|+.++|++++|+..|+++
T Consensus        55 ~~~~~~~~l~a~~~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   55 PSNPDIHYLLARCLLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HCHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence            98877 778899999999999999999864

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.85  E-value=1.1e-08  Score=82.06  Aligned_cols=82  Identities=20%  Similarity=0.233  Sum_probs=70.9

Q ss_pred             HcCChHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHH
Q 009850           58 VDKDPEKAIPLFWAAINAGDR--VDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQ  135 (524)
Q Consensus        58 ~~g~~~~Ai~~~~~al~~~p~--~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA  135 (524)
                      .+|+++.|+..|++++...|.  +...++.+|.|+++.|+|++|+..+++ ...++.+.  .....+|.++..+|++++|
T Consensus         1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~--~~~~l~a~~~~~l~~y~eA   77 (84)
T PF12895_consen    1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNP--DIHYLLARCLLKLGKYEEA   77 (84)
T ss_dssp             HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHH--HHHHHHHHHHHHTT-HHHH
T ss_pred             CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCH--HHHHHHHHHHHHhCCHHHH
Confidence            368999999999999999984  567788899999999999999999999 77777775  5667779999999999999


Q ss_pred             HHHHHHH
Q 009850          136 IALLKHK  142 (524)
Q Consensus       136 ~~~~~~a  142 (524)
                      +.+|+++
T Consensus        78 i~~l~~~   84 (84)
T PF12895_consen   78 IKALEKA   84 (84)
T ss_dssp             HHHHHHH
T ss_pred             HHHHhcC
Confidence            9999875

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.84  E-value=4.8e-07  Score=96.36  Aligned_cols=74  Identities=12%  Similarity=0.153  Sum_probs=63.0

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhc
Q 009850           79 VDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNG  154 (524)
Q Consensus        79 ~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~  154 (524)
                      +.+++.....++...|++++|+++++.....-.|..  .+.-..|.++..+|++++|...|+..|..++.+..+..
T Consensus         3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~--~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~   76 (517)
T PF12569_consen    3 HSELLLYKNSILEEAGDYEEALEHLEKNEKQILDKL--AVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYR   76 (517)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence            457788889999999999999999998777777765  66778899999999999999999999999765555443

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.83  E-value=3.1e-07  Score=81.77  Aligned_cols=118  Identities=19%  Similarity=0.126  Sum_probs=98.2

Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCcHH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHH
Q 009850           91 KQQNRAEEAIEAIKSLRSRCSDQAQ-ESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQV  169 (524)
Q Consensus        91 ~~~g~~~eAi~~~~~al~~~p~~~~-~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~  169 (524)
                      ...++...+...++..+..+|+.++ ......++.++...|++++|...|+.++..                        
T Consensus        22 ~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~------------------------   77 (145)
T PF09976_consen   22 LQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN------------------------   77 (145)
T ss_pred             HHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh------------------------
Confidence            3578999999999999999998843 356677899999999999999999999886                        


Q ss_pred             hcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHh
Q 009850          170 SVEQEA---TRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRV  235 (524)
Q Consensus       170 ~~~p~~---~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a  235 (524)
                        .|+.   ..+...|+.++...|+|++|+..++.. .-.+-.+. +..+|.++...|++++|+..|+++
T Consensus        78 --~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A  144 (145)
T PF09976_consen   78 --APDPELKPLARLRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA  144 (145)
T ss_pred             --CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence              3333   458889999999999999999999763 22222333 778999999999999999999975

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.82  E-value=2.3e-07  Score=89.73  Aligned_cols=120  Identities=22%  Similarity=0.253  Sum_probs=107.4

Q ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCc
Q 009850           96 AEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEA  175 (524)
Q Consensus        96 ~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~  175 (524)
                      .+.-+.-++.-+..+|+++  .-|..||.+|+..|+++.|...|.+++++                          .|++
T Consensus       138 ~~~l~a~Le~~L~~nP~d~--egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--------------------------~g~n  189 (287)
T COG4235         138 MEALIARLETHLQQNPGDA--EGWDLLGRAYMALGRASDALLAYRNALRL--------------------------AGDN  189 (287)
T ss_pred             HHHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhcchhHHHHHHHHHHHh--------------------------CCCC
Confidence            5566777788899999998  78899999999999999999999999999                          9999


Q ss_pred             HHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCC
Q 009850          176 TRLLGNLGWALMQQN---NYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGP  243 (524)
Q Consensus       176 ~~a~~~Lg~~~~~~g---~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~  243 (524)
                      ++.+..+|.+++.+.   ...++...|++++..+|.+.. .+.||..++..|+|.+|+..++..+...|.+.
T Consensus       190 ~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~  261 (287)
T COG4235         190 PEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD  261 (287)
T ss_pred             HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence            999999999988765   468999999999999999999 99999999999999999999997766555443

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.82  E-value=1.7e-07  Score=100.29  Aligned_cols=142  Identities=13%  Similarity=0.053  Sum_probs=114.4

Q ss_pred             CCCcHHHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHH
Q 009850          110 CSDQAQESLDNILLDLYKRCGR---LDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWAL  186 (524)
Q Consensus       110 ~p~~~~~~l~~~lg~~~~~~g~---~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~  186 (524)
                      .|.+....-.+..|.-|...+.   ...|+.+|++++++                          +|+++.++-.++.++
T Consensus       333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--------------------------dP~~a~a~A~la~~~  386 (517)
T PRK10153        333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--------------------------EPDFTYAQAEKALAD  386 (517)
T ss_pred             CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--------------------------CCCcHHHHHHHHHHH
Confidence            3455433334455655655544   77999999999999                          999999999988887


Q ss_pred             HHcC--------CHHHHHHHHHHHHhh--CCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHH
Q 009850          187 MQQN--------NYIEAEDAYRRALSI--APDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYER  255 (524)
Q Consensus       187 ~~~g--------~~~eAi~~~~~Al~l--~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~  255 (524)
                      ....        +...+.....+++.+  +|.++. +..+|..+...|++++|...++                     +
T Consensus       387 ~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~---------------------r  445 (517)
T PRK10153        387 IVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAIN---------------------K  445 (517)
T ss_pred             HHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHH---------------------H
Confidence            6542        345666777776664  666666 7888999999999999999999                     7


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCC
Q 009850          256 AQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  299 (524)
Q Consensus       256 al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~  299 (524)
                      ++.+.|+ ..+|..+|.++...|++++|+..|++|++++|..+.
T Consensus       446 Al~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt  488 (517)
T PRK10153        446 AIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT  488 (517)
T ss_pred             HHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence            8888884 789999999999999999999999999999999987

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.82  E-value=1.3e-07  Score=93.90  Aligned_cols=190  Identities=16%  Similarity=0.115  Sum_probs=133.3

Q ss_pred             ChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--Cc--HHHHHHHHHHHHHHHcCChHHHH
Q 009850           61 DPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCS--DQ--AQESLDNILLDLYKRCGRLDDQI  136 (524)
Q Consensus        61 ~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p--~~--~~~~l~~~lg~~~~~~g~~~eA~  136 (524)
                      ++++|...|.+|              |.+|...|++++|...|.++....-  ++  .....+...+.+|... ++++|+
T Consensus        30 ~~e~Aa~~y~~A--------------a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai   94 (282)
T PF14938_consen   30 DYEEAADLYEKA--------------ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAI   94 (282)
T ss_dssp             HHHHHHHHHHHH--------------HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHH
T ss_pred             CHHHHHHHHHHH--------------HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHH
Confidence            566666666655              7889999999999999999876543  22  1134555666666555 999999


Q ss_pred             HHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCC-cHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCC--CcH--
Q 009850          137 ALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQE-ATRLLGNLGWALMQQ-NNYIEAEDAYRRALSIAP--DNN--  210 (524)
Q Consensus       137 ~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~-~~~a~~~Lg~~~~~~-g~~~eAi~~~~~Al~l~P--~~~--  210 (524)
                      .+|++++.+....                     .++. -+.++..+|.+|... |++++|+.+|++|+.+..  +..  
T Consensus        95 ~~~~~A~~~y~~~---------------------G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~  153 (282)
T PF14938_consen   95 ECYEKAIEIYREA---------------------GRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHS  153 (282)
T ss_dssp             HHHHHHHHHHHHC---------------------T-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHH
T ss_pred             HHHHHHHHHHHhc---------------------CcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhh
Confidence            9999999873110                     0111 256889999999999 999999999999998632  221  


Q ss_pred             -H--HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 009850          211 -K--MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGS  287 (524)
Q Consensus       211 -~--~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~  287 (524)
                       .  +..+|.++.++|+|++|+..|+++..........              .......++..+.+++..|++-.|...+
T Consensus       154 a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~--------------~~~~~~~~l~a~l~~L~~~D~v~A~~~~  219 (282)
T PF14938_consen  154 AAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLL--------------KYSAKEYFLKAILCHLAMGDYVAARKAL  219 (282)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTT--------------GHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccccc--------------chhHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence             1  6789999999999999999999763322211100              0011234567788999999999999999


Q ss_pred             hhcccCCCCCCCc
Q 009850          288 SSIWQPQPCKDHI  300 (524)
Q Consensus       288 ~~al~~~P~~~~~  300 (524)
                      +.....+|....+
T Consensus       220 ~~~~~~~~~F~~s  232 (282)
T PF14938_consen  220 ERYCSQDPSFASS  232 (282)
T ss_dssp             HHHGTTSTTSTTS
T ss_pred             HHHHhhCCCCCCc
Confidence            9999999887663

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=98.80  E-value=1.9e-06  Score=85.71  Aligned_cols=196  Identities=16%  Similarity=0.121  Sum_probs=149.7

Q ss_pred             HHHHhcCCCChH--HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-
Q 009850           36 FHAIHKVPVGDT--PYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSD-  112 (524)
Q Consensus        36 ~~~~~~~p~~~~--~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~-  112 (524)
                      +..+...+.++.  ....++......|++..|.....++++..|.++..+.....+|...|++.+...++.+..+..-- 
T Consensus       141 L~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~  220 (400)
T COG3071         141 LAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLS  220 (400)
T ss_pred             HHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCC
Confidence            334444533333  45677888999999999999999999999999999999999999999999888877765443210 


Q ss_pred             c-------------------------H--------------HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccH-h-
Q 009850          113 Q-------------------------A--------------QESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGL-A-  151 (524)
Q Consensus       113 ~-------------------------~--------------~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~-~-  151 (524)
                      +                         .              ...+...++.-+..+|+.++|.+..+++++..-... + 
T Consensus       221 ~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~  300 (400)
T COG3071         221 DEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR  300 (400)
T ss_pred             hHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH
Confidence            0                         0              012333556667889999999999999987652211 1 


Q ss_pred             hhc--------ccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHcC
Q 009850          152 FNG--------KRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQG  223 (524)
Q Consensus       152 ~~~--------~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~~~~Lg~~~~~~G  223 (524)
                      +..        ...+.+...     ....|+++..+..||..+++.+.|.+|..+|+.+++..|+..+|..+|.++.++|
T Consensus       301 ~~~~l~~~d~~~l~k~~e~~-----l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g  375 (400)
T COG3071         301 LIPRLRPGDPEPLIKAAEKW-----LKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLG  375 (400)
T ss_pred             HHhhcCCCCchHHHHHHHHH-----HHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcC
Confidence            110        111122211     3447999999999999999999999999999999999999988999999999999


Q ss_pred             CHHHHHHHHHHhc
Q 009850          224 RIGEAKETLRRVK  236 (524)
Q Consensus       224 ~~~eA~~~~~~a~  236 (524)
                      +..+|.++++.++
T Consensus       376 ~~~~A~~~r~e~L  388 (400)
T COG3071         376 EPEEAEQVRREAL  388 (400)
T ss_pred             ChHHHHHHHHHHH
Confidence            9999999999763

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.80  E-value=2e-08  Score=76.15  Aligned_cols=64  Identities=33%  Similarity=0.402  Sum_probs=52.3

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 009850          121 ILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYR  200 (524)
Q Consensus       121 ~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~  200 (524)
                      .+|..+...|++++|+..|+++++.                          +|+++.+++.+|.++..+|++++|+.+|+
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~--------------------------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~   55 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQ--------------------------DPDNPEAWYLLGRILYQQGRYDEALAYYE   55 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCC--------------------------STTHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHH--------------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            4577788888888888888888877                          78888888888888888888888888888


Q ss_pred             HHHhhCCCcH
Q 009850          201 RALSIAPDNN  210 (524)
Q Consensus       201 ~Al~l~P~~~  210 (524)
                      ++++.+|+++
T Consensus        56 ~a~~~~P~~p   65 (65)
T PF13432_consen   56 RALELDPDNP   65 (65)
T ss_dssp             HHHHHSTT-H
T ss_pred             HHHHHCcCCC
Confidence            8888888764

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.80  E-value=2.9e-09  Score=103.07  Aligned_cols=229  Identities=9%  Similarity=-0.065  Sum_probs=158.9

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Q 009850           49 YVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKR  128 (524)
Q Consensus        49 ~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~  128 (524)
                      .-..|+.|+.+|.|++||.||.+++..+|.++..+.+.|.+|+++.+|..|...+..++.++....  .+|...+..-..
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~--KAYSRR~~AR~~  177 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYV--KAYSRRMQARES  177 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHH--HHHHHHHHHHHH
Confidence            456799999999999999999999999999999999999999999999999999999999987665  677777888889


Q ss_pred             cCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHH---------HHHHHHHHHcCCHHHHHHHH
Q 009850          129 CGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLL---------GNLGWALMQQNNYIEAEDAY  199 (524)
Q Consensus       129 ~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~---------~~Lg~~~~~~g~~~eAi~~~  199 (524)
                      +|...+|-+-++.+|++.+....+.........-..+.+...--|+...+.         -.-|..+...|.++-++.+|
T Consensus       178 Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~E~~I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~~i~~~  257 (536)
T KOG4648|consen  178 LGNNMEAKKDCETVLALEPKNIELKKSLARINSLRERKIATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRSVPVVDV  257 (536)
T ss_pred             HhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcchHhhhHHhhcCCCCCccccchhhhccccCcchhhhhhhccccceeEe
Confidence            999999999999999997654443321111111111111111123322221         22356666777777777777


Q ss_pred             HHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 009850          200 RRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQS  278 (524)
Q Consensus       200 ~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g  278 (524)
                      -+-+..+.++.. ..+ +..|.+.-++++|+...-+                     +.-..|.........|...--.|
T Consensus       258 ~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~---------------------~~~~~~s~~~~~s~~~~A~T~~~  315 (536)
T KOG4648|consen  258 VSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVK---------------------KTNPKPTPMPDTSGPPKAETIAK  315 (536)
T ss_pred             eccccccCccccCccc-HHHHHHHhhcchhHHHHHH---------------------hcCCCCCcCcccCCCchhHHHHh
Confidence            776666555555 333 6666677777777766664                     33333333333333444444556


Q ss_pred             CHHHHHHHHhhcccCCCCCCCcc
Q 009850          279 RLFDAFLGSSSIWQPQPCKDHIL  301 (524)
Q Consensus       279 ~~~eAi~~~~~al~~~P~~~~~l  301 (524)
                      ...++-..++.++.+.|.+....
T Consensus       316 ~~~E~K~~~~T~~~~~P~~~~~~  338 (536)
T KOG4648|consen  316 TSKEVKPTKQTAVKVAPAVETPK  338 (536)
T ss_pred             hhhhcCcchhheeeeccccccch
Confidence            67777788888888888876644

>PRK15331 chaperone protein SicA; Provisional

Probab=98.79  E-value=9.9e-08  Score=84.71  Aligned_cols=100  Identities=13%  Similarity=0.011  Sum_probs=54.8

Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhccc
Q 009850           77 DRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKR  156 (524)
Q Consensus        77 p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~  156 (524)
                      ++.-+..+..|.-++..|++++|...|+-+...+|.++  ..+..||.++..+++|++|+..|..+..+           
T Consensus        34 ~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~--~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-----------  100 (165)
T PRK15331         34 QDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNP--DYTMGLAAVCQLKKQFQKACDLYAVAFTL-----------  100 (165)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----------
Confidence            33444455555555555555555555555555555554  34455555555555555555555555544           


Q ss_pred             HHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009850          157 TKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALS  204 (524)
Q Consensus       157 ~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~  204 (524)
                                     +++++...+..|.|++.+|+.+.|..+|..++.
T Consensus       101 ---------------~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~  133 (165)
T PRK15331        101 ---------------LKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE  133 (165)
T ss_pred             ---------------ccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence                           445555555555555555555555555555555

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.77  E-value=5.2e-08  Score=96.76  Aligned_cols=106  Identities=16%  Similarity=0.148  Sum_probs=60.0

Q ss_pred             CCCcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHH
Q 009850          172 EQEATRLLGNLGWALMQQN--NYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDS  248 (524)
Q Consensus       172 ~p~~~~a~~~Lg~~~~~~g--~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~  248 (524)
                      +.+..-+....+|+.+..|  .+.+|...|++.....+..+. +..++.|++.+|+|++|...++               
T Consensus       161 ~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~---------------  225 (290)
T PF04733_consen  161 DEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLE---------------  225 (290)
T ss_dssp             SCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHH---------------
T ss_pred             CCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHH---------------
Confidence            4444444445555555555  466777777776655555555 6667777777777777776666               


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH-HHHHHhhcccCCCCCC
Q 009850          249 HLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFD-AFLGSSSIWQPQPCKD  298 (524)
Q Consensus       249 A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~e-Ai~~~~~al~~~P~~~  298 (524)
                            +++..+|.++.++.|+..+...+|+..+ +.+.....-+.+|.++
T Consensus       226 ------~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~  270 (290)
T PF04733_consen  226 ------EALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHP  270 (290)
T ss_dssp             ------HHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred             ------HHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence                  4455556666667777766666666633 3344444444555543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.76  E-value=2.9e-07  Score=89.91  Aligned_cols=101  Identities=9%  Similarity=-0.021  Sum_probs=90.8

Q ss_pred             ChHHHHHHHHHH-HHcCChHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-HHHH
Q 009850           45 GDTPYVRAKNVQ-LVDKDPEKAIPLFWAAINAGDRV---DSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQ-ESLD  119 (524)
Q Consensus        45 ~~~~~~~lg~~~-~~~g~~~~Ai~~~~~al~~~p~~---~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~-~~l~  119 (524)
                      ....+|..|..+ +..|+|++|+..|+..++..|++   +.+++.+|.+|+..|++++|+..|++++..+|+++. ..++
T Consensus       141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl  220 (263)
T PRK10803        141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM  220 (263)
T ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence            456778888876 66899999999999999999987   589999999999999999999999999999997643 4677


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHH
Q 009850          120 NILLDLYKRCGRLDDQIALLKHKLYL  145 (524)
Q Consensus       120 ~~lg~~~~~~g~~~eA~~~~~~al~l  145 (524)
                      +.+|.++...|++++|...|+++++.
T Consensus       221 ~klg~~~~~~g~~~~A~~~~~~vi~~  246 (263)
T PRK10803        221 FKVGVIMQDKGDTAKAKAVYQQVIKK  246 (263)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            88899999999999999999999988

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.74  E-value=2.1e-07  Score=93.09  Aligned_cols=147  Identities=12%  Similarity=0.135  Sum_probs=114.0

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 009850          119 DNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDA  198 (524)
Q Consensus       119 ~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~  198 (524)
                      ...-|..|++.|+|..|...|++++........+.......+..           --..++.|++.|+.++++|.+|+.+
T Consensus       211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~-----------~k~~~~lNlA~c~lKl~~~~~Ai~~  279 (397)
T KOG0543|consen  211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEA-----------LKLACHLNLAACYLKLKEYKEAIES  279 (397)
T ss_pred             HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHH-----------HHHHHhhHHHHHHHhhhhHHHHHHH
Confidence            34567788899999999999999887632211111100000000           1134889999999999999999999


Q ss_pred             HHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 009850          199 YRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQ  277 (524)
Q Consensus       199 ~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~  277 (524)
                      +.++|.++|+|.. ++..|.++..+|+++.|+..|+                     +++++.|++..+...+..+..+.
T Consensus       280 c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~---------------------ka~k~~P~Nka~~~el~~l~~k~  338 (397)
T KOG0543|consen  280 CNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQ---------------------KALKLEPSNKAARAELIKLKQKI  338 (397)
T ss_pred             HHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHH---------------------HHHHhCCCcHHHHHHHHHHHHHH
Confidence            9999999999999 9999999999999999999999                     88999999999999998888777


Q ss_pred             CCHHHH-HHHHhhcccCCCCC
Q 009850          278 SRLFDA-FLGSSSIWQPQPCK  297 (524)
Q Consensus       278 g~~~eA-i~~~~~al~~~P~~  297 (524)
                      .++.+. ...|..++..-+..
T Consensus       339 ~~~~~kekk~y~~mF~k~~~~  359 (397)
T KOG0543|consen  339 REYEEKEKKMYANMFAKLAEE  359 (397)
T ss_pred             HHHHHHHHHHHHHHhhccccc
Confidence            777665 55677777665543

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.74  E-value=2.5e-07  Score=90.44  Aligned_cols=108  Identities=16%  Similarity=0.244  Sum_probs=77.4

Q ss_pred             HHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCcHH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHH
Q 009850           81 SALKDMAIVM-KQQNRAEEAIEAIKSLRSRCSDQAQ-ESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTK  158 (524)
Q Consensus        81 ~a~~~La~~~-~~~g~~~eAi~~~~~al~~~p~~~~-~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~  158 (524)
                      ..++..|..+ ...|+|++|+..|+..+..+|++.+ ..+++.+|.+|+..|++++|+..|++++..++.          
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~----------  212 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPK----------  212 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC----------
Confidence            5566666655 4567888888888888888886632 356677788888888888888888877776221          


Q ss_pred             HHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q 009850          159 TARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK  211 (524)
Q Consensus       159 ~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~  211 (524)
                                   +|..+++++.+|.++...|++++|+..|+++++..|+...
T Consensus       213 -------------s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~  252 (263)
T PRK10803        213 -------------SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDG  252 (263)
T ss_pred             -------------CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence                         2334677778888888888888888888888887777653

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.72  E-value=6.8e-07  Score=76.35  Aligned_cols=99  Identities=21%  Similarity=0.210  Sum_probs=83.0

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-HHHHHHH
Q 009850           47 TPYVRAKNVQLVDKDPEKAIPLFWAAINAGDR---VDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQ-ESLDNIL  122 (524)
Q Consensus        47 ~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~---~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~-~~l~~~l  122 (524)
                      .++|.+|.++-..|+.++|+.+|++++.....   -..++..+|.++..+|++++|+..+++++...|++.. ..+...+
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~   81 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL   81 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence            46889999999999999999999999997543   3568899999999999999999999999999887321 2455566


Q ss_pred             HHHHHHcCChHHHHHHHHHHHHH
Q 009850          123 LDLYKRCGRLDDQIALLKHKLYL  145 (524)
Q Consensus       123 g~~~~~~g~~~eA~~~~~~al~l  145 (524)
                      +.++...|++++|+..+-.++.-
T Consensus        82 Al~L~~~gr~~eAl~~~l~~la~  104 (120)
T PF12688_consen   82 ALALYNLGRPKEALEWLLEALAE  104 (120)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHH
Confidence            77888999999999998877643

>PRK11906 transcriptional regulator; Provisional

Probab=98.72  E-value=8.9e-07  Score=90.70  Aligned_cols=157  Identities=10%  Similarity=-0.027  Sum_probs=120.2

Q ss_pred             HHHHHHHHHcC---CHHHHHHHHHHHH---HhCCCcHHHHHHHHHHHHHHHc---------CChHHHHHHHHHHHHHhhc
Q 009850           84 KDMAIVMKQQN---RAEEAIEAIKSLR---SRCSDQAQESLDNILLDLYKRC---------GRLDDQIALLKHKLYLIQQ  148 (524)
Q Consensus        84 ~~La~~~~~~g---~~~eAi~~~~~al---~~~p~~~~~~l~~~lg~~~~~~---------g~~~eA~~~~~~al~l~~~  148 (524)
                      +.+|......+   ..+.|+.+|.+++   .++|+.+  ..+..++.++...         ....+|.++.++++++   
T Consensus       259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a--~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel---  333 (458)
T PRK11906        259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKT--ECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI---  333 (458)
T ss_pred             HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccH--HHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc---
Confidence            55666655554   4568999999999   9999886  4445555554432         2345667777777777   


Q ss_pred             cHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHH
Q 009850          149 GLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGE  227 (524)
Q Consensus       149 ~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~e  227 (524)
                                             +|.|+.++..+|.++...++++.|+..|++|+.++|+.+. |+..|.+....|+.++
T Consensus       334 -----------------------d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~  390 (458)
T PRK11906        334 -----------------------TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEE  390 (458)
T ss_pred             -----------------------CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHH
Confidence                                   9999999999999999999999999999999999999999 9999999999999999


Q ss_pred             HHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCCHHHHHHHHhh
Q 009850          228 AKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGD-RVEQSRLFDAFLGSSS  289 (524)
Q Consensus       228 A~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~-~~~~g~~~eAi~~~~~  289 (524)
                      |...++                     +++++.|....+-...-++ .+--...++|+..|-+
T Consensus       391 a~~~i~---------------------~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (458)
T PRK11906        391 ARICID---------------------KSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYK  432 (458)
T ss_pred             HHHHHH---------------------HHhccCchhhHHHHHHHHHHHHcCCchhhhHHHHhh
Confidence            999999                     6666777555443333333 3444567777777654

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.68  E-value=2.7e-07  Score=84.48  Aligned_cols=182  Identities=16%  Similarity=0.039  Sum_probs=95.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHH
Q 009850           81 SALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTA  160 (524)
Q Consensus        81 ~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a  160 (524)
                      ..++..|..|-.+|-+.-|.-.|.+++.+.|+-+  .+++.+|..+...|+++.|.+.|...+++               
T Consensus        66 ~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~--~vfNyLG~Yl~~a~~fdaa~eaFds~~EL---------------  128 (297)
T COG4785          66 QLLFERGVLYDSLGLRALARNDFSQALAIRPDMP--EVFNYLGIYLTQAGNFDAAYEAFDSVLEL---------------  128 (297)
T ss_pred             HHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcH--HHHHHHHHHHHhcccchHHHHHhhhHhcc---------------
Confidence            3344555555555555555555555555555554  45555555555555555555555555555               


Q ss_pred             HHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH---HHHHHHHHHHcCCHHHHHHHH-HHhc
Q 009850          161 RSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK---MCNLGICLMKQGRIGEAKETL-RRVK  236 (524)
Q Consensus       161 ~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~---~~~Lg~~~~~~G~~~eA~~~~-~~a~  236 (524)
                                 +|..--++.|.|..++.-|+|.-|.+.+.+--+.+|++|-   |..+-   ...-+..+|...+ +++.
T Consensus       129 -----------Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~  194 (297)
T COG4785         129 -----------DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAE  194 (297)
T ss_pred             -----------CCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHH
Confidence                       5555555555555555555555555555555555555554   22111   1122333443332 2222


Q ss_pred             ccccCCCcCH------H--HHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHcCCHHHHHHHHhhcccC
Q 009850          237 PAVADGPRGV------D--SHLKAYERAQQMLK-------DLESEMMNKGGDRVEQSRLFDAFLGSSSIWQP  293 (524)
Q Consensus       237 ~~~~~~~~~~------~--~A~~~~~~al~~~p-------~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~  293 (524)
                      ....+-||-.      +  .-...++++.+...       ...+.++.+|..+...|+.++|...|+-++..
T Consensus       195 ~~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian  266 (297)
T COG4785         195 KSDKEQWGWNIVEFYLGKISEETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN  266 (297)
T ss_pred             hccHhhhhHHHHHHHHhhccHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence            2222222110      0  00111222222222       23467899999999999999999999877644

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.68  E-value=5.7e-07  Score=92.35  Aligned_cols=119  Identities=22%  Similarity=0.307  Sum_probs=108.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHh
Q 009850           85 DMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQG  164 (524)
Q Consensus        85 ~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~  164 (524)
                      .|-.++...++++.|+..+++..+.+|+.     ...++.++...++..+|+..+.+++..                   
T Consensus       174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pev-----~~~LA~v~l~~~~E~~AI~ll~~aL~~-------------------  229 (395)
T PF09295_consen  174 TLLKYLSLTQRYDEAIELLEKLRERDPEV-----AVLLARVYLLMNEEVEAIRLLNEALKE-------------------  229 (395)
T ss_pred             HHHHHHhhcccHHHHHHHHHHHHhcCCcH-----HHHHHHHHHhcCcHHHHHHHHHHHHHh-------------------
Confidence            45566677789999999999999999764     255788888899999999999999987                   


Q ss_pred             HHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHH
Q 009850          165 KKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRR  234 (524)
Q Consensus       165 ~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~  234 (524)
                             +|.+...+...+..+...++++.|+.+.++++.+.|++.. |+.|+.||..+|++++|+..++.
T Consensus       230 -------~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs  293 (395)
T PF09295_consen  230 -------NPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNS  293 (395)
T ss_pred             -------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence                   8999999999999999999999999999999999999998 99999999999999999998884

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PRK15331 chaperone protein SicA; Provisional

Probab=98.67  E-value=2.2e-07  Score=82.58  Aligned_cols=98  Identities=5%  Similarity=-0.189  Sum_probs=90.6

Q ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 009850           46 DTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDL  125 (524)
Q Consensus        46 ~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~  125 (524)
                      -+..+..|.-++..|++++|...|+-....+|.+.+.+..||.|+..+++|++|+..|..+..++++++  ...+..|.+
T Consensus        37 le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp--~p~f~agqC  114 (165)
T PRK15331         37 MDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDY--RPVFFTGQC  114 (165)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCC--CccchHHHH
Confidence            346788999999999999999999999999999999999999999999999999999999999999887  445778999


Q ss_pred             HHHcCChHHHHHHHHHHHHH
Q 009850          126 YKRCGRLDDQIALLKHKLYL  145 (524)
Q Consensus       126 ~~~~g~~~eA~~~~~~al~l  145 (524)
                      |..+|+.+.|..+|..++..
T Consensus       115 ~l~l~~~~~A~~~f~~a~~~  134 (165)
T PRK15331        115 QLLMRKAAKARQCFELVNER  134 (165)
T ss_pred             HHHhCCHHHHHHHHHHHHhC
Confidence            99999999999999998874

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.66  E-value=5.2e-06  Score=96.12  Aligned_cols=208  Identities=12%  Similarity=-0.020  Sum_probs=151.8

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcCCC---------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-H--H
Q 009850           48 PYVRAKNVQLVDKDPEKAIPLFWAAINAGDR---------VDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQ-A--Q  115 (524)
Q Consensus        48 ~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~---------~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~-~--~  115 (524)
                      .....+.+++..|++++|...+..+....+.         .......+|.++...|++++|..++++++...+.. .  .
T Consensus       411 l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  490 (903)
T PRK04841        411 LVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSR  490 (903)
T ss_pred             hHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHH
Confidence            3456777888899999999999888764221         23445567888889999999999999998865532 1  1


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCC--cHHHHHHHHHHHHHcCCHH
Q 009850          116 ESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQE--ATRLLGNLGWALMQQNNYI  193 (524)
Q Consensus       116 ~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~--~~~a~~~Lg~~~~~~g~~~  193 (524)
                      ......+|.++...|++++|...+++++.....                      ..+.  ...++.++|.++...|+++
T Consensus       491 ~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~----------------------~g~~~~~~~~~~~la~~~~~~G~~~  548 (903)
T PRK04841        491 IVATSVLGEVHHCKGELARALAMMQQTEQMARQ----------------------HDVYHYALWSLLQQSEILFAQGFLQ  548 (903)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh----------------------hcchHHHHHHHHHHHHHHHHCCCHH
Confidence            234567788888999999999999999876210                      0111  1346788899999999999


Q ss_pred             HHHHHHHHHHhhCCC-----c---HH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCH
Q 009850          194 EAEDAYRRALSIAPD-----N---NK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLE  264 (524)
Q Consensus       194 eAi~~~~~Al~l~P~-----~---~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~  264 (524)
                      +|...+++++.+...     .   .. +..+|.++...|++++|...++++........                .....
T Consensus       549 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~----------------~~~~~  612 (903)
T PRK04841        549 AAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQ----------------PQQQL  612 (903)
T ss_pred             HHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccC----------------chHHH
Confidence            999999999886321     1   12 55788999999999999999997643221100                01123


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhhcccC
Q 009850          265 SEMMNKGGDRVEQSRLFDAFLGSSSIWQP  293 (524)
Q Consensus       265 ~a~~~lg~~~~~~g~~~eAi~~~~~al~~  293 (524)
                      .++..+|.++...|++++|...+..+...
T Consensus       613 ~~~~~la~~~~~~G~~~~A~~~l~~a~~~  641 (903)
T PRK04841        613 QCLAMLAKISLARGDLDNARRYLNRLENL  641 (903)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            46677899999999999999998888654

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.62  E-value=2.4e-05  Score=72.29  Aligned_cols=171  Identities=25%  Similarity=0.287  Sum_probs=143.7

Q ss_pred             cCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHhCCC-cHHHHH
Q 009850           41 KVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAI-VMKQQNRAEEAIEAIKSLRSRCSD-QAQESL  118 (524)
Q Consensus        41 ~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~-~~~~~g~~~eAi~~~~~al~~~p~-~~~~~l  118 (524)
                      ..+.....+...|......+++..++..+..++...+.........+. ++...|+++.|+..+.+++...|. ......
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  169 (291)
T COG0457          90 LLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEA  169 (291)
T ss_pred             hccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHH
Confidence            456677788999999999999999999999999988887666666666 899999999999999999887763 222244


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHH
Q 009850          119 DNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQE-ATRLLGNLGWALMQQNNYIEAED  197 (524)
Q Consensus       119 ~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~-~~~a~~~Lg~~~~~~g~~~eAi~  197 (524)
                      ....+..+...++++.|+..+.+++..                          .+. ....+..++..+...+++++|+.
T Consensus       170 ~~~~~~~~~~~~~~~~a~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~a~~  223 (291)
T COG0457         170 LLALGALLEALGRYEEALELLEKALKL--------------------------NPDDDAEALLNLGLLYLKLGKYEEALE  223 (291)
T ss_pred             HHHhhhHHHHhcCHHHHHHHHHHHHhh--------------------------CcccchHHHHHhhHHHHHcccHHHHHH
Confidence            455566677889999999999999988                          666 68899999999999999999999


Q ss_pred             HHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcc
Q 009850          198 AYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKP  237 (524)
Q Consensus       198 ~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~  237 (524)
                      .+..++...|.... +..++..+...|.++++...+.++..
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (291)
T COG0457         224 YYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE  264 (291)
T ss_pred             HHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence            99999999999655 77788888877889999988885433

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.62  E-value=1.2e-06  Score=89.91  Aligned_cols=120  Identities=14%  Similarity=0.072  Sum_probs=108.6

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCC
Q 009850           52 AKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGR  131 (524)
Q Consensus        52 lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~  131 (524)
                      +-..+...++++.|+..|++..+.+|+   +...++.++...++..+|+..+.+++...|.+.  .+....+..+...++
T Consensus       175 Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~--~LL~~Qa~fLl~k~~  249 (395)
T PF09295_consen  175 LLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDS--ELLNLQAEFLLSKKK  249 (395)
T ss_pred             HHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHhcCC
Confidence            445556678999999999999988875   566789999999999999999999999999886  788888999999999


Q ss_pred             hHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009850          132 LDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRA  202 (524)
Q Consensus       132 ~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~A  202 (524)
                      ++.|+.+.++++.+                          .|.+...|+.|+.+|...|+|+.|+..++.+
T Consensus       250 ~~lAL~iAk~av~l--------------------------sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~  294 (395)
T PF09295_consen  250 YELALEIAKKAVEL--------------------------SPSEFETWYQLAECYIQLGDFENALLALNSC  294 (395)
T ss_pred             HHHHHHHHHHHHHh--------------------------CchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence            99999999999999                          8999999999999999999999999887754

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.60  E-value=1.3e-06  Score=74.66  Aligned_cols=98  Identities=26%  Similarity=0.188  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHH
Q 009850           81 SALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQA-QESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKT  159 (524)
Q Consensus        81 ~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~-~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~  159 (524)
                      .+++.+|.++..+|+.++|+.+|++++....+.. ...++..+|..|..+|++++|+..+++++..              
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--------------   67 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--------------   67 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------------
Confidence            5789999999999999999999999999876543 3467788999999999999999999999877              


Q ss_pred             HHHHhHHHHHhcCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009850          160 ARSQGKKFQVSVEQE---ATRLLGNLGWALMQQNNYIEAEDAYRRALS  204 (524)
Q Consensus       160 a~~~~~~~~~~~~p~---~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~  204 (524)
                                  .|+   +..+...++.++...|++++|+..+-.++.
T Consensus        68 ------------~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   68 ------------FPDDELNAALRVFLALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             ------------CCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence                        566   677888899999999999999999988875

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.60  E-value=1e-06  Score=88.26  Aligned_cols=126  Identities=19%  Similarity=0.170  Sum_probs=99.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-------------HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccH
Q 009850           84 KDMAIVMKQQNRAEEAIEAIKSLRSRCSDQ-------------AQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGL  150 (524)
Q Consensus        84 ~~La~~~~~~g~~~eAi~~~~~al~~~p~~-------------~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~  150 (524)
                      ...|..|++.|+|..|...|++++..-...             ....++.+++.+|.++++|.+|+....++|.+     
T Consensus       212 ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~-----  286 (397)
T KOG0543|consen  212 KERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL-----  286 (397)
T ss_pred             HHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc-----
Confidence            345666666666666666666655543210             11357788999999999999999999999999     


Q ss_pred             hhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHH-
Q 009850          151 AFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEA-  228 (524)
Q Consensus       151 ~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA-  228 (524)
                                           +|++..+++..|.++...|+|+.|+..|+++++++|+|.. ...+..|..+..++.+. 
T Consensus       287 ---------------------~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~ke  345 (397)
T KOG0543|consen  287 ---------------------DPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKE  345 (397)
T ss_pred             ---------------------CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence                                 9999999999999999999999999999999999999987 77777777666655554 


Q ss_pred             HHHHHHh
Q 009850          229 KETLRRV  235 (524)
Q Consensus       229 ~~~~~~a  235 (524)
                      ...|...
T Consensus       346 kk~y~~m  352 (397)
T KOG0543|consen  346 KKMYANM  352 (397)
T ss_pred             HHHHHHH
Confidence            5556654

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.58  E-value=5.9e-05  Score=76.65  Aligned_cols=261  Identities=13%  Similarity=0.056  Sum_probs=144.6

Q ss_pred             hhHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 009850           34 DSFHAIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQ  113 (524)
Q Consensus        34 ~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~  113 (524)
                      ..|.....+.....+|...-..-++.+..+.|...|++-+-..|+ ...|...+..-.+.|+..-|...|++|+..-.++
T Consensus       162 qiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~-v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d  240 (677)
T KOG1915|consen  162 QIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPK-VSNWIKYARFEEKHGNVALARSVYERAIEFLGDD  240 (677)
T ss_pred             HHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheeccc-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhH
Confidence            333333333334444444444444444455555555544444443 3444445555555555555555555555544332


Q ss_pred             H-HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHh--hhcc------------cHHHHHHHhHHH----HHhcCCC
Q 009850          114 A-QESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLA--FNGK------------RTKTARSQGKKF----QVSVEQE  174 (524)
Q Consensus       114 ~-~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~--~~~~------------~~~~a~~~~~~~----~~~~~p~  174 (524)
                      - ...+....+..-..+..++.|...|+-++...+.+.+  +..+            ..+.+....+.+    .+..+|.
T Consensus       241 ~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~  320 (677)
T KOG1915|consen  241 EEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPY  320 (677)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCC
Confidence            1 1233334444444455555555555555554444422  0000            011111111111    2455899


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH----------HHHHHHH-HHHcCCHHHHHHHHHHhcccccCCC
Q 009850          175 ATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK----------MCNLGIC-LMKQGRIGEAKETLRRVKPAVADGP  243 (524)
Q Consensus       175 ~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~----------~~~Lg~~-~~~~G~~~eA~~~~~~a~~~~~~~~  243 (524)
                      +-++|+.+-.+....|+-+.-.+.|++|+.--|....          |.|.+.. -+...+.+.+...|+.++...|...
T Consensus       321 nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkk  400 (677)
T KOG1915|consen  321 NYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKK  400 (677)
T ss_pred             CchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCccc
Confidence            9999999988888889999999999999887665422          2222211 1345677777777777665555442


Q ss_pred             --------------------------------------------------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 009850          244 --------------------------------------------------RGVDSHLKAYERAQQMLKDLESEMMNKGGD  273 (524)
Q Consensus       244 --------------------------------------------------~~~~~A~~~~~~al~~~p~~~~a~~~lg~~  273 (524)
                                                                        +.++.+.+.|++-++..|.+-.+|...|..
T Consensus       401 FtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaEl  480 (677)
T KOG1915|consen  401 FTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAEL  480 (677)
T ss_pred             chHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHH
Confidence                                                              344556667777777777777777777777


Q ss_pred             HHHcCCHHHHHHHHhhcccCCC
Q 009850          274 RVEQSRLFDAFLGSSSIWQPQP  295 (524)
Q Consensus       274 ~~~~g~~~eAi~~~~~al~~~P  295 (524)
                      -..+|+.+.|...|+-|++...
T Consensus       481 E~~LgdtdRaRaifelAi~qp~  502 (677)
T KOG1915|consen  481 ETSLGDTDRARAIFELAISQPA  502 (677)
T ss_pred             HHHhhhHHHHHHHHHHHhcCcc
Confidence            7777777777777777766543

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.58  E-value=2.1e-07  Score=71.10  Aligned_cols=66  Identities=23%  Similarity=0.204  Sum_probs=59.1

Q ss_pred             HHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 009850           56 QLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILL  123 (524)
Q Consensus        56 ~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg  123 (524)
                      ++..|++++|+..|++++..+|++.++++.+|.+|...|++++|...+++++..+|+++  .++..++
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~--~~~~l~a   66 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNP--EYQQLLA   66 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHH--HHHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHH--HHHHHHh
Confidence            36789999999999999999999999999999999999999999999999999999976  4545544

...

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.52  E-value=9.2e-06  Score=77.90  Aligned_cols=217  Identities=11%  Similarity=-0.042  Sum_probs=154.0

Q ss_pred             CCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------------
Q 009850           43 PVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSR-------------  109 (524)
Q Consensus        43 p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~-------------  109 (524)
                      |..-.....+|.+|+...+|..|..+|.+.-...|......+..+..+++.+.+.+|+.........             
T Consensus        41 p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaA  120 (459)
T KOG4340|consen   41 PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAA  120 (459)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            4455567889999999999999999999999999999999889999999999999888766543321             


Q ss_pred             ---C--------------CCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcC
Q 009850          110 ---C--------------SDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVE  172 (524)
Q Consensus       110 ---~--------------p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~  172 (524)
                         .              |........+..|.+.++.|+++.|++-|+.+++.                          .
T Consensus       121 IkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqv--------------------------s  174 (459)
T KOG4340|consen  121 IKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQV--------------------------S  174 (459)
T ss_pred             HhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhh--------------------------c
Confidence               1              11001234455677777888888888888888877                          5


Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----CCc-------------------------HH-HHHHHHHHHHc
Q 009850          173 QEATRLLGNLGWALMQQNNYIEAEDAYRRALSIA----PDN-------------------------NK-MCNLGICLMKQ  222 (524)
Q Consensus       173 p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~----P~~-------------------------~~-~~~Lg~~~~~~  222 (524)
                      .-++-+-++++.++++.|+|+.|+++..+.++..    |+.                         .. ++..+.++.+.
T Consensus       175 GyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~  254 (459)
T KOG4340|consen  175 GYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQL  254 (459)
T ss_pred             CCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhc
Confidence            5566788999999999999999999998887643    332                         11 34457778899


Q ss_pred             CCHHHHHHHHHHhcccccCCC--------------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 009850          223 GRIGEAKETLRRVKPAVADGP--------------RGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFL  285 (524)
Q Consensus       223 G~~~eA~~~~~~a~~~~~~~~--------------~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~  285 (524)
                      |+++.|.+.+...-|......              ++.......++-.+++.|--.+...|+-.+|.+..-++-|-.
T Consensus       255 ~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAAD  331 (459)
T KOG4340|consen  255 RNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAAD  331 (459)
T ss_pred             ccHHHHHHHhhcCCCcccccCCchhhhHHHHhcccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHH
Confidence            999999888876533322211              222333455556666677555666666666666555554443

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.51  E-value=2.4e-05  Score=70.28  Aligned_cols=154  Identities=19%  Similarity=0.132  Sum_probs=124.9

Q ss_pred             HHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHHHcCC
Q 009850           53 KNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRS-RCSDQAQESLDNILLDLYKRCGR  131 (524)
Q Consensus        53 g~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~-~~p~~~~~~l~~~lg~~~~~~g~  131 (524)
                      +......=|++.+.....+.+...|.. .-.+.||..+..+|++.||..+|++++. +.-+++  .+..-++......++
T Consensus        63 ~~a~~q~ldP~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~--a~lLglA~Aqfa~~~  139 (251)
T COG4700          63 LMALQQKLDPERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDA--AMLLGLAQAQFAIQE  139 (251)
T ss_pred             HHHHHHhcChhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCH--HHHHHHHHHHHhhcc
Confidence            344455567777777777777777764 5578899999999999999999999876 344565  555667788889999


Q ss_pred             hHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 009850          132 LDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQE--ATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDN  209 (524)
Q Consensus       132 ~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~--~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~  209 (524)
                      +..|...++...+.                          +|.  .++....+|.+|...|++.+|...|+.++...|+.
T Consensus       140 ~A~a~~tLe~l~e~--------------------------~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~  193 (251)
T COG4700         140 FAAAQQTLEDLMEY--------------------------NPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGP  193 (251)
T ss_pred             HHHHHHHHHHHhhc--------------------------CCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCH
Confidence            99999999988877                          333  35678889999999999999999999999999987


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHh
Q 009850          210 NKMCNLGICLMKQGRIGEAKETLRRV  235 (524)
Q Consensus       210 ~~~~~Lg~~~~~~G~~~eA~~~~~~a  235 (524)
                      ...+..+..+.++|+..+|..-+..+
T Consensus       194 ~ar~~Y~e~La~qgr~~ea~aq~~~v  219 (251)
T COG4700         194 QARIYYAEMLAKQGRLREANAQYVAV  219 (251)
T ss_pred             HHHHHHHHHHHHhcchhHHHHHHHHH
Confidence            77777899999999999988877754

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.50  E-value=4.9e-06  Score=70.31  Aligned_cols=97  Identities=21%  Similarity=0.112  Sum_probs=87.6

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH--HHHHHHHHHHH
Q 009850           49 YVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQ--ESLDNILLDLY  126 (524)
Q Consensus        49 ~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~--~~l~~~lg~~~  126 (524)
                      +-.-|......|+.+.|++.|.+++.+-|..+.+|.+.+..+..+|+.++|++.+++++++..+...  ...+...|.+|
T Consensus        46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly  125 (175)
T KOG4555|consen   46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY  125 (175)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence            4456788899999999999999999999999999999999999999999999999999999875532  45667889999


Q ss_pred             HHcCChHHHHHHHHHHHHH
Q 009850          127 KRCGRLDDQIALLKHKLYL  145 (524)
Q Consensus       127 ~~~g~~~eA~~~~~~al~l  145 (524)
                      ..+|+-+.|..-|+.+-++
T Consensus       126 Rl~g~dd~AR~DFe~AA~L  144 (175)
T KOG4555|consen  126 RLLGNDDAARADFEAAAQL  144 (175)
T ss_pred             HHhCchHHHHHhHHHHHHh
Confidence            9999999999999999877

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.49  E-value=6.9e-07  Score=80.88  Aligned_cols=99  Identities=19%  Similarity=0.285  Sum_probs=91.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH------HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHH
Q 009850          180 GNLGWALMQQNNYIEAEDAYRRALSIAPDNNK------MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAY  253 (524)
Q Consensus       180 ~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~------~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~  253 (524)
                      -.-|+-++..|+|++|..-|..||.+.|..+.      |.|.|.|+++++.++.|+..+.                    
T Consensus        99 K~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcs--------------------  158 (271)
T KOG4234|consen   99 KKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCS--------------------  158 (271)
T ss_pred             HHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHH--------------------
Confidence            44588899999999999999999999998754      6799999999999999999999                    


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCC
Q 009850          254 ERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  299 (524)
Q Consensus       254 ~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~  299 (524)
                       +++++.|.+..++..++.+|....++++|+..|.+++..+|....
T Consensus       159 -Kaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~e  203 (271)
T KOG4234|consen  159 -KAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRRE  203 (271)
T ss_pred             -hhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHH
Confidence             889999999999999999999999999999999999999998664

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.46  E-value=9.8e-07  Score=68.36  Aligned_cols=63  Identities=22%  Similarity=0.206  Sum_probs=60.1

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 009850           52 AKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQA  114 (524)
Q Consensus        52 lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~  114 (524)
                      |..+++..+++++|+.+++.++..+|+++..+..+|.++..+|++++|+..++++++..|++.
T Consensus         1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~   63 (73)
T PF13371_consen    1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDP   63 (73)
T ss_pred             CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcH
Confidence            356789999999999999999999999999999999999999999999999999999999886

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.44  E-value=6.2e-05  Score=71.59  Aligned_cols=189  Identities=15%  Similarity=0.098  Sum_probs=136.0

Q ss_pred             ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-HHHHH
Q 009850           45 GDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDR---VDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQ-ESLDN  120 (524)
Q Consensus        45 ~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~---~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~-~~l~~  120 (524)
                      .++.++.-|...+..|++++|+..|+.+....|.   ...+...++.++++.+++++|+..+++-+.++|.++. ..+.+
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y  112 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY  112 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence            4567899999999999999999999999988765   4577889999999999999999999999999997642 23445


Q ss_pred             HHHHHHHHc--------CChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCH
Q 009850          121 ILLDLYKRC--------GRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNY  192 (524)
Q Consensus       121 ~lg~~~~~~--------g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~  192 (524)
                      +.|..+...        .-..+|+..|+..+...|.......     +......+    +-.-+.--...|..|.+.|.|
T Consensus       113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~d-----A~~~i~~~----~d~LA~~Em~IaryY~kr~~~  183 (254)
T COG4105         113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPD-----AKARIVKL----NDALAGHEMAIARYYLKRGAY  183 (254)
T ss_pred             HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhh-----HHHHHHHH----HHHHHHHHHHHHHHHHHhcCh
Confidence            556554322        1234566777777776544332111     00000000    001122335679999999999


Q ss_pred             HHHHHHHHHHHhhCCCcHH----HHHHHHHHHHcCCHHHHHHHHHHhcccccCC
Q 009850          193 IEAEDAYRRALSIAPDNNK----MCNLGICLMKQGRIGEAKETLRRVKPAVADG  242 (524)
Q Consensus       193 ~eAi~~~~~Al~l~P~~~~----~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~  242 (524)
                      ..|+.-++++++--|+...    +..+..+|..+|-.++|...-.-+....|+.
T Consensus       184 ~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s  237 (254)
T COG4105         184 VAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS  237 (254)
T ss_pred             HHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence            9999999999998776543    7889999999999999987766444444443

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.44  E-value=3.3e-07  Score=89.05  Aligned_cols=100  Identities=20%  Similarity=0.224  Sum_probs=91.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHH
Q 009850          179 LGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQ  257 (524)
Q Consensus       179 ~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al  257 (524)
                      +-..|+-|+++|.|++|+++|.+++..+|.++. +.|++.+|+++.+|..|...++                     .++
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~---------------------~Ai  158 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCE---------------------AAI  158 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHH---------------------HHH
Confidence            456799999999999999999999999999999 9999999999999999999999                     677


Q ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCC
Q 009850          258 QMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  299 (524)
Q Consensus       258 ~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~  299 (524)
                      .++..+..+|..+|.....+|+..+|-..++.++.+.|.+.+
T Consensus       159 aLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~E  200 (536)
T KOG4648|consen  159 ALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIE  200 (536)
T ss_pred             HhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHH
Confidence            777778888999999999999999999999999999998655

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.44  E-value=8.5e-07  Score=67.69  Aligned_cols=64  Identities=28%  Similarity=0.334  Sum_probs=53.7

Q ss_pred             HHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 009850          127 KRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIA  206 (524)
Q Consensus       127 ~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~  206 (524)
                      ...|++++|+..|++++..                          +|++..+++.+|.+|.+.|++++|...+++++..+
T Consensus         2 l~~~~~~~A~~~~~~~l~~--------------------------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~   55 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQR--------------------------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD   55 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHH--------------------------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred             hhccCHHHHHHHHHHHHHH--------------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            4678899999999999888                          89999999999999999999999999999999999


Q ss_pred             CCcHH-HHHHH
Q 009850          207 PDNNK-MCNLG  216 (524)
Q Consensus       207 P~~~~-~~~Lg  216 (524)
                      |+++. +..++
T Consensus        56 ~~~~~~~~l~a   66 (68)
T PF14559_consen   56 PDNPEYQQLLA   66 (68)
T ss_dssp             TTHHHHHHHHH
T ss_pred             cCHHHHHHHHh
Confidence            98866 44444

...

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.43  E-value=1.7e-06  Score=88.61  Aligned_cols=70  Identities=11%  Similarity=0.059  Sum_probs=65.3

Q ss_pred             cCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 009850           41 KVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSA---LKDMAIVMKQQNRAEEAIEAIKSLRSRC  110 (524)
Q Consensus        41 ~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a---~~~La~~~~~~g~~~eAi~~~~~al~~~  110 (524)
                      ..|..+.+|+++|..++..|+|++|+.+|+++++++|++.++   |+++|.+|..+|++++|+.++++++++.
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels  142 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY  142 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            467788899999999999999999999999999999999865   9999999999999999999999999974

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.41  E-value=6.1e-05  Score=76.54  Aligned_cols=255  Identities=11%  Similarity=0.043  Sum_probs=199.4

Q ss_pred             HHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 009850           38 AIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQES  117 (524)
Q Consensus        38 ~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~  117 (524)
                      .+.....+...|...|.--..++++..|...|++||..+..+...|...+.+-++..+...|...+.+|+.+-|.--  .
T Consensus        65 ~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd--q  142 (677)
T KOG1915|consen   65 QIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD--Q  142 (677)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH--H
Confidence            44444455667888888889999999999999999999999999999999999999999999999999999999764  5


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhc--------ccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHc
Q 009850          118 LDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNG--------KRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQ  189 (524)
Q Consensus       118 l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~--------~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~  189 (524)
                      +|+-+..+-..+|+...|.+.|++.+...+...+...        +..+-+.+....+... .| ....|...+..-.+.
T Consensus       143 lWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~-HP-~v~~wikyarFE~k~  220 (677)
T KOG1915|consen  143 LWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLV-HP-KVSNWIKYARFEEKH  220 (677)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee-cc-cHHHHHHHHHHHHhc
Confidence            6666666677899999999999999887654433211        2223333333333222 34 466888899999999


Q ss_pred             CCHHHHHHHHHHHHhhCCCcHH----HHHHHHHHHHcCCHHHHHHHHHHhcccccCCC---------------c---CHH
Q 009850          190 NNYIEAEDAYRRALSIAPDNNK----MCNLGICLMKQGRIGEAKETLRRVKPAVADGP---------------R---GVD  247 (524)
Q Consensus       190 g~~~eAi~~~~~Al~l~P~~~~----~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~---------------~---~~~  247 (524)
                      |+..-|..+|.+|+..-.++..    +...|..-..+..++.|...|+-|+...|.+-               |   +.+
T Consensus       221 g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIE  300 (677)
T KOG1915|consen  221 GNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIE  300 (677)
T ss_pred             CcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhH
Confidence            9999999999999997766543    44556666778889999999999887777763               1   222


Q ss_pred             HH-----HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCC
Q 009850          248 SH-----LKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPC  296 (524)
Q Consensus       248 ~A-----~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~  296 (524)
                      .+     .-.|++.+..+|-+-++|+..-.+....|+.+.-...|++|+..-|-
T Consensus       301 d~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp  354 (677)
T KOG1915|consen  301 DAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPP  354 (677)
T ss_pred             HHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCc
Confidence            23     23578888999999999999998989999999999999999877665

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.41  E-value=4.5e-06  Score=79.96  Aligned_cols=106  Identities=16%  Similarity=0.141  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHH
Q 009850           83 LKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQ-ESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTAR  161 (524)
Q Consensus        83 ~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~-~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~  161 (524)
                      .|+.|.-++..|+|.+|...|..-++..|++.. .++++.||.+++.+|+|++|...|..+++-++.             
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~-------------  210 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPK-------------  210 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCC-------------
Confidence            566677777777777777777777777775432 356666677777777777777777776665222             


Q ss_pred             HHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q 009850          162 SQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK  211 (524)
Q Consensus       162 ~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~  211 (524)
                                .|..+++++.||.+...+|+.++|...|+++++..|+...
T Consensus       211 ----------s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~a  250 (262)
T COG1729         211 ----------SPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDA  250 (262)
T ss_pred             ----------CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence                      3444667777777777777777777777777777776654

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.41  E-value=1.6e-06  Score=67.12  Aligned_cols=63  Identities=24%  Similarity=0.402  Sum_probs=56.2

Q ss_pred             HHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009850          123 LDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRA  202 (524)
Q Consensus       123 g~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~A  202 (524)
                      ..+|...+++++|+.++++++.+                          +|+++..|..+|.++...|++++|+..|+++
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~--------------------------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~   55 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALEL--------------------------DPDDPELWLQRARCLFQLGRYEEALEDLERA   55 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHh--------------------------CcccchhhHHHHHHHHHhccHHHHHHHHHHH
Confidence            45678889999999999999988                          8999999999999999999999999999999


Q ss_pred             HhhCCCcHH
Q 009850          203 LSIAPDNNK  211 (524)
Q Consensus       203 l~l~P~~~~  211 (524)
                      ++..|+++.
T Consensus        56 l~~~p~~~~   64 (73)
T PF13371_consen   56 LELSPDDPD   64 (73)
T ss_pred             HHHCCCcHH
Confidence            999998877

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.38  E-value=1.2e-06  Score=89.77  Aligned_cols=67  Identities=19%  Similarity=0.285  Sum_probs=63.8

Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH----HHHHHHHHHHcCCHHHHHHHHHHhccc
Q 009850          172 EQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK----MCNLGICLMKQGRIGEAKETLRRVKPA  238 (524)
Q Consensus       172 ~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~----~~~Lg~~~~~~G~~~eA~~~~~~a~~~  238 (524)
                      +|+++.+|+++|.+|+..|+|++|+.+|+++++++|++..    |+|+|.||..+|++++|+.+|++++..
T Consensus        71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            7999999999999999999999999999999999999873    999999999999999999999998664

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.37  E-value=1.4e-05  Score=73.50  Aligned_cols=95  Identities=13%  Similarity=-0.111  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 009850           48 PYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYK  127 (524)
Q Consensus        48 ~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~  127 (524)
                      .++..|..|-..|-+.-|.--|.+++.+.|+-++++..||.-+...|+|+.|.+.|...++++|.+.  .+..+.|..+.
T Consensus        67 l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~--Ya~lNRgi~~Y  144 (297)
T COG4785          67 LLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN--YAHLNRGIALY  144 (297)
T ss_pred             HHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch--HHHhccceeee
Confidence            3455555555555555555555555555555555555555555555555555555555555555543  12233333344


Q ss_pred             HcCChHHHHHHHHHHHH
Q 009850          128 RCGRLDDQIALLKHKLY  144 (524)
Q Consensus       128 ~~g~~~eA~~~~~~al~  144 (524)
                      --|++.-|.+-+.+-.+
T Consensus       145 Y~gR~~LAq~d~~~fYQ  161 (297)
T COG4785         145 YGGRYKLAQDDLLAFYQ  161 (297)
T ss_pred             ecCchHhhHHHHHHHHh
Confidence            44555555554444333

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=98.36  E-value=1.5e-05  Score=78.31  Aligned_cols=230  Identities=10%  Similarity=-0.004  Sum_probs=152.6

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--cHH--HH
Q 009850           47 TPYVRAKNVQLVDKDPEKAIPLFWAAINAGDR-----VDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSD--QAQ--ES  117 (524)
Q Consensus        47 ~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~-----~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~--~~~--~~  117 (524)
                      ++|.+++..+-..-++.+++.+-...+.+-..     -...+..+|.++..++.++++++.|+.+++....  ++.  ..
T Consensus        84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq  163 (518)
T KOG1941|consen   84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ  163 (518)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence            35667777777777777777777666665222     2255667888888888899999999988877542  221  34


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 009850          118 LDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAED  197 (524)
Q Consensus       118 l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~  197 (524)
                      +...||.++-.+.++++|+.+..++.++... +.+.+     ..          ......+++.++..+..+|+...|.+
T Consensus       164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s-~~l~d-----~~----------~kyr~~~lyhmaValR~~G~LgdA~e  227 (518)
T KOG1941|consen  164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNS-YGLKD-----WS----------LKYRAMSLYHMAVALRLLGRLGDAME  227 (518)
T ss_pred             hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHh-cCcCc-----hh----------HHHHHHHHHHHHHHHHHhcccccHHH
Confidence            6667888888888899988888888876211 00000     00          00113477899999999999999999


Q ss_pred             HHHHHHhhC---CCcHH----HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCH------------------------
Q 009850          198 AYRRALSIA---PDNNK----MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGV------------------------  246 (524)
Q Consensus       198 ~~~~Al~l~---P~~~~----~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~------------------------  246 (524)
                      +.+++.++.   .+.+.    ...+|.+|...|+.+.|..-|++|.........++                        
T Consensus       228 ~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~  307 (518)
T KOG1941|consen  228 CCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICN  307 (518)
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccc
Confidence            999998764   22222    56799999999999999999999843332221111                        


Q ss_pred             HHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHhhccc
Q 009850          247 DSHLKAYERAQQMLKDL------ESEMMNKGGDRVEQSRLFDAFLGSSSIWQ  292 (524)
Q Consensus       247 ~~A~~~~~~al~~~p~~------~~a~~~lg~~~~~~g~~~eAi~~~~~al~  292 (524)
                      -.+++.-.+.+++....      ...+..++.+|..+|.-++-...+.++-+
T Consensus       308 Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~  359 (518)
T KOG1941|consen  308 CRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHE  359 (518)
T ss_pred             cchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence            01233333444433222      24567778889888888877776666443

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.36  E-value=6.9e-05  Score=84.64  Aligned_cols=206  Identities=13%  Similarity=0.082  Sum_probs=114.7

Q ss_pred             cCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHc-CCCcHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q 009850           41 KVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINA-GDRVDS----ALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQ  115 (524)
Q Consensus        41 ~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~-~p~~~~----a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~  115 (524)
                      ..|...-.|.+.-...++.++.++|.+.+++||.. ++...+    .|..+-+....-|.-+.-.+.|++|.+.+...  
T Consensus      1453 ssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~-- 1530 (1710)
T KOG1070|consen 1453 SSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAY-- 1530 (1710)
T ss_pred             cCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchH--
Confidence            34444445555444555555555555555555542 322221    12222222222233444445555555544332  


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Q 009850          116 ESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEA  195 (524)
Q Consensus       116 ~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eA  195 (524)
                       .++..|..+|...+.+++|.++|+..++.                          -.....+|..+|..++++.+-++|
T Consensus      1531 -~V~~~L~~iy~k~ek~~~A~ell~~m~KK--------------------------F~q~~~vW~~y~~fLl~~ne~~aa 1583 (1710)
T KOG1070|consen 1531 -TVHLKLLGIYEKSEKNDEADELLRLMLKK--------------------------FGQTRKVWIMYADFLLRQNEAEAA 1583 (1710)
T ss_pred             -HHHHHHHHHHHHhhcchhHHHHHHHHHHH--------------------------hcchhhHHHHHHHHHhcccHHHHH
Confidence             34444555555555555555555555544                          123344555555555555555555


Q ss_pred             HHHHHHHHhhCCC--cHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 009850          196 EDAYRRALSIAPD--NNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGG  272 (524)
Q Consensus       196 i~~~~~Al~l~P~--~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~  272 (524)
                      ...+.+|++.-|.  +.. ....|..-++.|+.+.+...|+                     ..+...|...+.|.-...
T Consensus      1584 ~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfE---------------------gll~ayPKRtDlW~VYid 1642 (1710)
T KOG1070|consen 1584 RELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFE---------------------GLLSAYPKRTDLWSVYID 1642 (1710)
T ss_pred             HHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHH---------------------HHHhhCccchhHHHHHHH
Confidence            5555555555555  222 3344555555555555555555                     778888888889988888


Q ss_pred             HHHHcCCHHHHHHHHhhcccCCCC
Q 009850          273 DRVEQSRLFDAFLGSSSIWQPQPC  296 (524)
Q Consensus       273 ~~~~~g~~~eAi~~~~~al~~~P~  296 (524)
                      .-...|+..-....|++++.+.-.
T Consensus      1643 ~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1643 MEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred             HHHccCCHHHHHHHHHHHHhcCCC
Confidence            888899999999999998876543

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.35  E-value=0.00016  Score=68.88  Aligned_cols=177  Identities=17%  Similarity=0.101  Sum_probs=136.1

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccH
Q 009850           79 VDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQ-ESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRT  157 (524)
Q Consensus        79 ~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~-~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~  157 (524)
                      -+.-|+.-|....+.|++++|+..|+.+...+|..++ ..+...++..+++.+++++|+...++-+++++.         
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~---------  103 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPT---------  103 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC---------
Confidence            4577899999999999999999999999999997644 456678889999999999999999999999443         


Q ss_pred             HHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHhhCCCcH-----------------H-
Q 009850          158 KTARSQGKKFQVSVEQEATRLLGNLGWALMQQN--------NYIEAEDAYRRALSIAPDNN-----------------K-  211 (524)
Q Consensus       158 ~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g--------~~~eAi~~~~~Al~l~P~~~-----------------~-  211 (524)
                                    +|+-..+++..|.+++..=        -..+|+..|+..+..-|+..                 . 
T Consensus       104 --------------~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~  169 (254)
T COG4105         104 --------------HPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGH  169 (254)
T ss_pred             --------------CCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHH
Confidence                          4555678888888876542        25678999999999999871                 1 


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcc
Q 009850          212 MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIW  291 (524)
Q Consensus       212 ~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al  291 (524)
                      =..+|..|.+.|.+..|+.-++.++..+++..                  ...+++..+..+|..+|-.++|-..-.-+-
T Consensus       170 Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~------------------~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~  231 (254)
T COG4105         170 EMAIARYYLKRGAYVAAINRFEEVLENYPDTS------------------AVREALARLEEAYYALGLTDEAKKTAKVLG  231 (254)
T ss_pred             HHHHHHHHHHhcChHHHHHHHHHHHhcccccc------------------chHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence            23567888889999999988886655544322                  233567778889999999988877644433


Q ss_pred             cCCCC
Q 009850          292 QPQPC  296 (524)
Q Consensus       292 ~~~P~  296 (524)
                      .-.|.
T Consensus       232 ~N~p~  236 (254)
T COG4105         232 ANYPD  236 (254)
T ss_pred             hcCCC
Confidence            33333

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.35  E-value=1.6e-05  Score=71.35  Aligned_cols=130  Identities=12%  Similarity=0.032  Sum_probs=110.8

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHH-cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 009850           48 PYVRAKNVQLVDKDPEKAIPLFWAAIN-AGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLY  126 (524)
Q Consensus        48 ~~~~lg~~~~~~g~~~~Ai~~~~~al~-~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~  126 (524)
                      -.++||....+.|++.+|..+|++++. +..+++..+..++...+..+++.+|...++...+.+|..-...-...++..|
T Consensus        91 nr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~l  170 (251)
T COG4700          91 NRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTL  170 (251)
T ss_pred             HHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHH
Confidence            467999999999999999999999986 5778899999999999999999999999999999998532224456778899


Q ss_pred             HHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009850          127 KRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALS  204 (524)
Q Consensus       127 ~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~  204 (524)
                      ...|++.+|...|+.++..                          .|+ +.+...++..+.++|+..+|..-+.....
T Consensus       171 aa~g~~a~Aesafe~a~~~--------------------------ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d  221 (251)
T COG4700         171 AAQGKYADAESAFEVAISY--------------------------YPG-PQARIYYAEMLAKQGRLREANAQYVAVVD  221 (251)
T ss_pred             HhcCCchhHHHHHHHHHHh--------------------------CCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence            9999999999999999987                          343 55777889999999998888777666554

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=98.35  E-value=1.2e-05  Score=78.97  Aligned_cols=234  Identities=15%  Similarity=0.058  Sum_probs=119.6

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHH---HHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCcHHHHHHHH
Q 009850           49 YVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDS---ALKDMAIVMKQQNRAEEAIEAIKSLRS----RCSDQAQESLDNI  121 (524)
Q Consensus        49 ~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~---a~~~La~~~~~~g~~~eAi~~~~~al~----~~p~~~~~~l~~~  121 (524)
                      +..-|..++...++++|+..+.+.+..-.+...   .+..+..+...+|+|++++.+--..+.    ..........+..
T Consensus         9 q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~ln   88 (518)
T KOG1941|consen    9 QIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLN   88 (518)
T ss_pred             HHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455556666666666666666654333222   222334555555665555444332222    2222222334444


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHHhh-------------ccHhhhc--ccHHHHHHHhHHHHHhcCCCc----HHHHHHH
Q 009850          122 LLDLYKRCGRLDDQIALLKHKLYLIQ-------------QGLAFNG--KRTKTARSQGKKFQVSVEQEA----TRLLGNL  182 (524)
Q Consensus       122 lg~~~~~~g~~~eA~~~~~~al~l~~-------------~~~~~~~--~~~~~a~~~~~~~~~~~~p~~----~~a~~~L  182 (524)
                      ++..+.+.-++.+++.+-+..+.+..             .+.++.+  ........+..++.+..+.++    ..++..|
T Consensus        89 lar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~L  168 (518)
T KOG1941|consen   89 LARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSL  168 (518)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhH
Confidence            45555555555555554444433310             0000000  011111222222222222333    2466667


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCcH----------H-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHH
Q 009850          183 GWALMQQNNYIEAEDAYRRALSIAPDNN----------K-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLK  251 (524)
Q Consensus       183 g~~~~~~g~~~eAi~~~~~Al~l~P~~~----------~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~  251 (524)
                      |..+....++++|.-+..+|.++.....          . .+.++.++..+|+...|.++++++.+              
T Consensus       169 gslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~k--------------  234 (518)
T KOG1941|consen  169 GSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMK--------------  234 (518)
T ss_pred             HHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHH--------------
Confidence            7777777777777777776666533221          1 45566667777777777777765421              


Q ss_pred             HHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCC
Q 009850          252 AYERAQQM--LKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  299 (524)
Q Consensus       252 ~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~  299 (524)
                         -+++.  .+-.+....-+|.+|...|+.+.|...|+.+......-+.
T Consensus       235 ---lal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gd  281 (518)
T KOG1941|consen  235 ---LALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGD  281 (518)
T ss_pred             ---HHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhh
Confidence               11111  2233455677899999999999999999999876554444

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.31  E-value=2.1e-05  Score=68.53  Aligned_cols=19  Identities=11%  Similarity=0.167  Sum_probs=15.6

Q ss_pred             HHHHHHHHHHHHhhCCCcH
Q 009850          192 YIEAEDAYRRALSIAPDNN  210 (524)
Q Consensus       192 ~~eAi~~~~~Al~l~P~~~  210 (524)
                      ..+|...|++.+..-|++.
T Consensus       115 ~~~A~~~f~~lv~~yP~S~  133 (142)
T PF13512_consen  115 ARQAFRDFEQLVRRYPNSE  133 (142)
T ss_pred             HHHHHHHHHHHHHHCcCCh
Confidence            5688888999998888764

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.30  E-value=1.7e-05  Score=76.10  Aligned_cols=98  Identities=16%  Similarity=0.005  Sum_probs=90.6

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-HHHHHHHHH
Q 009850           49 YVRAKNVQLVDKDPEKAIPLFWAAINAGDRV---DSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQ-ESLDNILLD  124 (524)
Q Consensus        49 ~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~---~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~-~~l~~~lg~  124 (524)
                      .|+.|.-++..|+|..|...|..-++..|+.   +.+++.||.+++.+|+|++|...|..+++..|+++. ....+.+|.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            7899999999999999999999999998764   688999999999999999999999999999998754 377889999


Q ss_pred             HHHHcCChHHHHHHHHHHHHHh
Q 009850          125 LYKRCGRLDDQIALLKHKLYLI  146 (524)
Q Consensus       125 ~~~~~g~~~eA~~~~~~al~l~  146 (524)
                      +..++|+.++|...|+++++.+
T Consensus       224 ~~~~l~~~d~A~atl~qv~k~Y  245 (262)
T COG1729         224 SLGRLGNTDEACATLQQVIKRY  245 (262)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHC
Confidence            9999999999999999999983

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.27  E-value=8.8e-05  Score=70.45  Aligned_cols=155  Identities=17%  Similarity=0.159  Sum_probs=114.6

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 009850           48 PYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYK  127 (524)
Q Consensus        48 ~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~  127 (524)
                      ....-|.++...|++++|+......     .+-++.-.-..|+.++.+++-|...++++.+++.+.....+...+..+..
T Consensus       110 ~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~  184 (299)
T KOG3081|consen  110 DLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLAT  184 (299)
T ss_pred             HHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhc
Confidence            3445567778888888888776652     44556666667788888888888888888888766543222222222223


Q ss_pred             HcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 009850          128 RCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAP  207 (524)
Q Consensus       128 ~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P  207 (524)
                      ..+.+.+|.-+|+..-+.                          -|..+..++.++.+++.+|+|++|...++.+|..++
T Consensus       185 ggek~qdAfyifeE~s~k--------------------------~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~  238 (299)
T KOG3081|consen  185 GGEKIQDAFYIFEELSEK--------------------------TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA  238 (299)
T ss_pred             cchhhhhHHHHHHHHhcc--------------------------cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence            344577777777766553                          466788999999999999999999999999999999


Q ss_pred             CcHH-HHHHHHHHHHcCCHHHHHHHHH
Q 009850          208 DNNK-MCNLGICLMKQGRIGEAKETLR  233 (524)
Q Consensus       208 ~~~~-~~~Lg~~~~~~G~~~eA~~~~~  233 (524)
                      ++++ +.|+-.+-..+|.-.++..-+-
T Consensus       239 ~dpetL~Nliv~a~~~Gkd~~~~~r~l  265 (299)
T KOG3081|consen  239 KDPETLANLIVLALHLGKDAEVTERNL  265 (299)
T ss_pred             CCHHHHHHHHHHHHHhCCChHHHHHHH
Confidence            9999 9999999999998877765443

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.26  E-value=3e-05  Score=65.60  Aligned_cols=89  Identities=24%  Similarity=0.274  Sum_probs=80.5

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 009850          121 ILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYR  200 (524)
Q Consensus       121 ~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~  200 (524)
                      ..|..+...|+.+.|++.|.+++.+                          -|..+.+|+|.+..+.-+|+.++|++.++
T Consensus        48 l~~valaE~g~Ld~AlE~F~qal~l--------------------------~P~raSayNNRAQa~RLq~~~e~ALdDLn  101 (175)
T KOG4555|consen   48 LKAIALAEAGDLDGALELFGQALCL--------------------------APERASAYNNRAQALRLQGDDEEALDDLN  101 (175)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHh--------------------------cccchHhhccHHHHHHHcCChHHHHHHHH
Confidence            4455667889999999999999999                          89999999999999999999999999999


Q ss_pred             HHHhhCCCcHH-----HHHHHHHHHHcCCHHHHHHHHHHh
Q 009850          201 RALSIAPDNNK-----MCNLGICLMKQGRIGEAKETLRRV  235 (524)
Q Consensus       201 ~Al~l~P~~~~-----~~~Lg~~~~~~G~~~eA~~~~~~a  235 (524)
                      +++++..+...     ++..|.+|..+|+-+.|...|+.+
T Consensus       102 ~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~A  141 (175)
T KOG4555|consen  102 KALELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAA  141 (175)
T ss_pred             HHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHH
Confidence            99999765432     889999999999999999999976

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.23  E-value=3e-06  Score=66.63  Aligned_cols=62  Identities=16%  Similarity=0.156  Sum_probs=33.0

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHc----C---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 009850           48 PYVRAKNVQLVDKDPEKAIPLFWAAINA----G---DRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSR  109 (524)
Q Consensus        48 ~~~~lg~~~~~~g~~~~Ai~~~~~al~~----~---p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~  109 (524)
                      .+..+|.++...|++++|+.+|++++.+    .   |....++.++|.++..+|++++|++++++++++
T Consensus         7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            4555666666666666666666666543    1   112334555555555555555555555555543

...

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.21  E-value=3.4e-05  Score=67.23  Aligned_cols=102  Identities=15%  Similarity=0.016  Sum_probs=85.9

Q ss_pred             ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-HHHHH
Q 009850           45 GDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDR---VDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQ-ESLDN  120 (524)
Q Consensus        45 ~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~---~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~-~~l~~  120 (524)
                      .+..++..|...+..|+|++|++.|+.+....|.   ...+...||.+|+..|++++|+..+++.++++|.++. ..+++
T Consensus         9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y   88 (142)
T PF13512_consen    9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY   88 (142)
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence            4567899999999999999999999999988664   5678899999999999999999999999999997743 24556


Q ss_pred             HHHHHHHHcCC---------------hHHHHHHHHHHHHHh
Q 009850          121 ILLDLYKRCGR---------------LDDQIALLKHKLYLI  146 (524)
Q Consensus       121 ~lg~~~~~~g~---------------~~eA~~~~~~al~l~  146 (524)
                      ..|.+++.+..               ..+|...|++.+...
T Consensus        89 ~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~y  129 (142)
T PF13512_consen   89 MRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRY  129 (142)
T ss_pred             HHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHC
Confidence            77777777665               778888888888773

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.19  E-value=9.2e-05  Score=79.56  Aligned_cols=111  Identities=13%  Similarity=-0.003  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHH----------HhhCCCc----------HH-HHHHHHHHHHcCCHHHHHHHHHH
Q 009850          176 TRLLGNLGWALMQQNNYIEAEDAYRRA----------LSIAPDN----------NK-MCNLGICLMKQGRIGEAKETLRR  234 (524)
Q Consensus       176 ~~a~~~Lg~~~~~~g~~~eAi~~~~~A----------l~l~P~~----------~~-~~~Lg~~~~~~G~~~eA~~~~~~  234 (524)
                      -..|++.+.-+...++.+.|+++|+++          |.-+|..          .. |..-|..+...|+.+.|+.+|..
T Consensus       858 r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~  937 (1416)
T KOG3617|consen  858 RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS  937 (1416)
T ss_pred             hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence            458899999999999999999999875          3334433          22 45568888899999999999998


Q ss_pred             hcccccCC-----CcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcc
Q 009850          235 VKPAVADG-----PRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIW  291 (524)
Q Consensus       235 a~~~~~~~-----~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al  291 (524)
                      |...+...     .|..++|-     .+.....+..+.+.+|+.|...|+..+|+..|.+|-
T Consensus       938 A~D~fs~VrI~C~qGk~~kAa-----~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq  994 (1416)
T KOG3617|consen  938 AKDYFSMVRIKCIQGKTDKAA-----RIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQ  994 (1416)
T ss_pred             hhhhhhheeeEeeccCchHHH-----HHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            85544332     25666553     333445667789999999999999999999876553

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.17  E-value=6.9e-06  Score=64.51  Aligned_cols=69  Identities=19%  Similarity=0.266  Sum_probs=58.4

Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---C-CcHH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 009850           77 DRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRC---S-DQAQ-ESLDNILLDLYKRCGRLDDQIALLKHKLYL  145 (524)
Q Consensus        77 p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~---p-~~~~-~~l~~~lg~~~~~~g~~~eA~~~~~~al~l  145 (524)
                      |+...++.++|.+|..+|++++|+.+|++++.+.   + +++. ..++..+|.+|...|++++|++++++++++
T Consensus         2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            4456789999999999999999999999999762   2 2222 578889999999999999999999999987

...

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.16  E-value=3.4e-05  Score=70.07  Aligned_cols=102  Identities=17%  Similarity=0.175  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHH
Q 009850           83 LKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQA---QESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKT  159 (524)
Q Consensus        83 ~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~---~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~  159 (524)
                      +..-|.-++..|+|++|..-|..|+...|.-+   +..++...|.++.+++.++.|+....++|++              
T Consensus        98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel--------------  163 (271)
T KOG4234|consen   98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL--------------  163 (271)
T ss_pred             HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc--------------
Confidence            44456667777777777777777777777432   2344555566666667777777777766666              


Q ss_pred             HHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH
Q 009850          160 ARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNN  210 (524)
Q Consensus       160 a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~  210 (524)
                                  +|.+-.++...+.+|.+...|++|+..|++.++.+|...
T Consensus       164 ------------~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~  202 (271)
T KOG4234|consen  164 ------------NPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRR  202 (271)
T ss_pred             ------------CchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchH
Confidence                        666666666667777777777777777777777666553

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=98.16  E-value=0.0015  Score=65.31  Aligned_cols=232  Identities=15%  Similarity=0.147  Sum_probs=156.7

Q ss_pred             cCCCChHH--HHHHHHHHHHcCChHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 009850           41 KVPVGDTP--YVRAKNVQLVDKDPEKAIPLFWAAINAGDRV-DSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQES  117 (524)
Q Consensus        41 ~~p~~~~~--~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~-~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~  117 (524)
                      .+..+.++  +..-+...+..|+++.|.+-|+.++. +|+. .-.+..|-.--.++|..+.|..+-+.+....|.-++  
T Consensus       113 llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~W--  189 (531)
T COG3898         113 LLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPW--  189 (531)
T ss_pred             hhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCch--
Confidence            34444444  44456777889999999999988864 3332 112333334445789999999999999999998874  


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcH-----HHHHHHHHHHHHcCCH
Q 009850          118 LDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEAT-----RLLGNLGWALMQQNNY  192 (524)
Q Consensus       118 l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~-----~a~~~Lg~~~~~~g~~  192 (524)
                      .+.......+..|+|+.|+++.+.......                       +.++..     ..+...+... -.-+.
T Consensus       190 A~~AtLe~r~~~gdWd~AlkLvd~~~~~~v-----------------------ie~~~aeR~rAvLLtAkA~s~-ldadp  245 (531)
T COG3898         190 AARATLEARCAAGDWDGALKLVDAQRAAKV-----------------------IEKDVAERSRAVLLTAKAMSL-LDADP  245 (531)
T ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHHHh-----------------------hchhhHHHHHHHHHHHHHHHH-hcCCh
Confidence            444555566789999999999987765410                       011111     1111112111 22456


Q ss_pred             HHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCC--------cCHHHH---HHHHHHHHHhC
Q 009850          193 IEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGP--------RGVDSH---LKAYERAQQML  260 (524)
Q Consensus       193 ~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~--------~~~~~A---~~~~~~al~~~  260 (524)
                      ..|...-.+++++.|+... -..-+..+++.|+..++-..++.+-+..|...        ..-+.+   ++-..+...+.
T Consensus       246 ~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~ar~gdta~dRlkRa~~L~slk  325 (531)
T COG3898         246 ASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVRARSGDTALDRLKRAKKLESLK  325 (531)
T ss_pred             HHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHHhcCCCcHHHHHHHHHHHHhcC
Confidence            7777777778888887766 66667777788888888777777754444321        111112   33445667788


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCC
Q 009850          261 KDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  299 (524)
Q Consensus       261 p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~  299 (524)
                      |++.+..+..+..-+.-|++..|...-+.+.+..|...-
T Consensus       326 ~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~  364 (531)
T COG3898         326 PNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESA  364 (531)
T ss_pred             ccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhH
Confidence            999999999999999999999999999999998887655

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.10  E-value=8.3e-05  Score=70.36  Aligned_cols=159  Identities=18%  Similarity=0.202  Sum_probs=126.6

Q ss_pred             HHcCCh-HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHcCChHH
Q 009850           57 LVDKDP-EKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCS-DQAQESLDNILLDLYKRCGRLDD  134 (524)
Q Consensus        57 ~~~g~~-~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p-~~~~~~l~~~lg~~~~~~g~~~e  134 (524)
                      .+++.. +..+..+++-+      ....+.+..++..+|.|.-++..+.+.++.+| .++  .+...||.+-++.|+.+.
T Consensus       159 ~e~~~~~ESsv~lW~KRl------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p--~L~s~Lgr~~MQ~GD~k~  230 (366)
T KOG2796|consen  159 LEQGLAEESSIRLWRKRL------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEP--QLLSGLGRISMQIGDIKT  230 (366)
T ss_pred             HHhccchhhHHHHHHHHH------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccH--HHHHHHHHHHHhcccHHH
Confidence            444544 66777777754      35677888899999999999999999999885 445  677888999999999999


Q ss_pred             HHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HH
Q 009850          135 QIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MC  213 (524)
Q Consensus       135 A~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~  213 (524)
                      |..+|+++-+....                    +..-.....++.+.+.++.-+++|..|...|.+.+..+|.++. .+
T Consensus       231 a~~yf~~vek~~~k--------------------L~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~N  290 (366)
T KOG2796|consen  231 AEKYFQDVEKVTQK--------------------LDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANN  290 (366)
T ss_pred             HHHHHHHHHHHHhh--------------------hhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhc
Confidence            99999966555210                    0001234557788889999999999999999999999999988 77


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHhcccccCCC
Q 009850          214 NLGICLMKQGRIGEAKETLRRVKPAVADGP  243 (524)
Q Consensus       214 ~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~  243 (524)
                      +.|.|++.+|+..+|+..++.+.+..|...
T Consensus       291 nKALcllYlg~l~DAiK~~e~~~~~~P~~~  320 (366)
T KOG2796|consen  291 NKALCLLYLGKLKDALKQLEAMVQQDPRHY  320 (366)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence            899999999999999999999988888765

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.09  E-value=7.7e-05  Score=67.14  Aligned_cols=87  Identities=20%  Similarity=0.201  Sum_probs=66.2

Q ss_pred             CCCcHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcC----CHHHHHHHHHHhc
Q 009850          172 EQEATRLLGNLGWALMQQNN----------YIEAEDAYRRALSIAPDNNK-MCNLGICLMKQG----RIGEAKETLRRVK  236 (524)
Q Consensus       172 ~p~~~~a~~~Lg~~~~~~g~----------~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G----~~~eA~~~~~~a~  236 (524)
                      +|.+++.+++-|.++..+.+          +++|+.-|++||.++|+... ++++|.+|..++    +..+|..+|++  
T Consensus        21 nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~k--   98 (186)
T PF06552_consen   21 NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEK--   98 (186)
T ss_dssp             -TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHH--
T ss_pred             CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHH--
Confidence            99999999999999887643          57789999999999999998 999999998765    45677788874  


Q ss_pred             ccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 009850          237 PAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGG  272 (524)
Q Consensus       237 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~  272 (524)
                                  |..+|+++...+|++...+..|..
T Consensus        99 ------------A~~~FqkAv~~~P~ne~Y~ksLe~  122 (186)
T PF06552_consen   99 ------------ATEYFQKAVDEDPNNELYRKSLEM  122 (186)
T ss_dssp             ------------HHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred             ------------HHHHHHHHHhcCCCcHHHHHHHHH
Confidence                        788899999999998865555443

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=98.06  E-value=0.0019  Score=68.23  Aligned_cols=189  Identities=9%  Similarity=0.123  Sum_probs=122.3

Q ss_pred             HHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHc-CCC-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 009850           38 AIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINA-GDR-----VDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCS  111 (524)
Q Consensus        38 ~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~-~p~-----~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p  111 (524)
                      .+...|.+.+.|...  +-+..|+..+-+..|..|++. +|.     -...|..+|..|...|+.+.|...|+++.+..=
T Consensus       341 lLRQn~~nV~eW~kR--V~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y  418 (835)
T KOG2047|consen  341 LLRQNPHNVEEWHKR--VKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPY  418 (835)
T ss_pred             HHhcCCccHHHHHhh--hhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCc
Confidence            445667777777655  446689999999999999874 553     346788999999999999999999999988754


Q ss_pred             Cc--HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccH-hhhc-ccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHH
Q 009850          112 DQ--AQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGL-AFNG-KRTKTARSQGKKFQVSVEQEATRLLGNLGWALM  187 (524)
Q Consensus       112 ~~--~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~-~~~~-~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~  187 (524)
                      ..  -...+|...|..-.+..+++.|+.+.+++...-.... .+.. ...-....          -.+..+|..++....
T Consensus       419 ~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rl----------hrSlkiWs~y~DleE  488 (835)
T KOG2047|consen  419 KTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARL----------HRSLKIWSMYADLEE  488 (835)
T ss_pred             cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHH----------HHhHHHHHHHHHHHH
Confidence            32  2246778888888888999999999999876632211 1111 10000000          012345555555555


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhccc
Q 009850          188 QQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPA  238 (524)
Q Consensus       188 ~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~  238 (524)
                      ..|-++.-...|++.+.+.--.|. ..|.|..+....-++++.+.|++..+.
T Consensus       489 s~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~L  540 (835)
T KOG2047|consen  489 SLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISL  540 (835)
T ss_pred             HhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCcc
Confidence            555555555555555555555555 555555555555555555555554433

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.04  E-value=0.00028  Score=80.00  Aligned_cols=201  Identities=11%  Similarity=0.016  Sum_probs=163.2

Q ss_pred             hHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCC--cHHHHHHHHHHHHHHHcCChHHHHHH
Q 009850           62 PEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSR-CSD--QAQESLDNILLDLYKRCGRLDDQIAL  138 (524)
Q Consensus        62 ~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~-~p~--~~~~~l~~~lg~~~~~~g~~~eA~~~  138 (524)
                      -.+..+-|.+.+..+|+..-.|..+-..+.++++.++|.+..++|+.. ++.  +-..++|.++..+...-|.-+.-.+.
T Consensus      1440 ~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kV 1519 (1710)
T KOG1070|consen 1440 APESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKV 1519 (1710)
T ss_pred             CCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHH
Confidence            344567788888999999999999888899999999999999999875 332  22246667666666677877777888


Q ss_pred             HHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHH
Q 009850          139 LKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGI  217 (524)
Q Consensus       139 ~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~  217 (524)
                      |++|.+.                           -+...+|..|.-+|...+.+++|.++|+..++...+... |..+|.
T Consensus      1520 FeRAcqy---------------------------cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~ 1572 (1710)
T KOG1070|consen 1520 FERACQY---------------------------CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYAD 1572 (1710)
T ss_pred             HHHHHHh---------------------------cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHH
Confidence            9998876                           233558889999999999999999999999998886666 999999


Q ss_pred             HHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCC
Q 009850          218 CLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKD--LESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQP  295 (524)
Q Consensus       218 ~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P  295 (524)
                      .++++.+-++|...+.                     +|+...|.  +.+..-..+.+-++.|+.+.+...|+-.+.-.|
T Consensus      1573 fLl~~ne~~aa~~lL~---------------------rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayP 1631 (1710)
T KOG1070|consen 1573 FLLRQNEAEAARELLK---------------------RALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYP 1631 (1710)
T ss_pred             HHhcccHHHHHHHHHH---------------------HHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCc
Confidence            9999999999999998                     55666665  555667778899999999999999999999998


Q ss_pred             CCCCccccccccccccccc
Q 009850          296 CKDHILPTTNAIKTRDDFA  314 (524)
Q Consensus       296 ~~~~~l~~~~l~~~~q~lg  314 (524)
                      .-...-    .+|.++.++
T Consensus      1632 KRtDlW----~VYid~eik 1646 (1710)
T KOG1070|consen 1632 KRTDLW----SVYIDMEIK 1646 (1710)
T ss_pred             cchhHH----HHHHHHHHc
Confidence            876644    667665554

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.03  E-value=0.0011  Score=63.09  Aligned_cols=104  Identities=14%  Similarity=0.108  Sum_probs=68.7

Q ss_pred             CcHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHH
Q 009850          174 EATRLLGNLGWALMQQ----NNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDS  248 (524)
Q Consensus       174 ~~~~a~~~Lg~~~~~~----g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~  248 (524)
                      ++-.++..|+..+...    +.+.+|.-+|++.-+..|-.+. ....+.|.+.+|+|++|...++               
T Consensus       167 ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~---------------  231 (299)
T KOG3081|consen  167 DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLE---------------  231 (299)
T ss_pred             chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHH---------------
Confidence            3444555555555432    4577788888877775554555 7777888888888888888877               


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH-hhcccCCCCCC
Q 009850          249 HLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGS-SSIWQPQPCKD  298 (524)
Q Consensus       249 A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~-~~al~~~P~~~  298 (524)
                            .++..++.+++++.|+-.+-...|...++...+ .+.....|.++
T Consensus       232 ------eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~  276 (299)
T KOG3081|consen  232 ------EALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHP  276 (299)
T ss_pred             ------HHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence                  666777777778888777777777777766653 33334444433

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.99  E-value=0.00047  Score=65.40  Aligned_cols=145  Identities=11%  Similarity=0.030  Sum_probs=119.7

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCcHHHHHHHHHH
Q 009850           49 YVRAKNVQLVDKDPEKAIPLFWAAINAG-DRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSR----CSDQAQESLDNILL  123 (524)
Q Consensus        49 ~~~lg~~~~~~g~~~~Ai~~~~~al~~~-p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~----~p~~~~~~l~~~lg  123 (524)
                      .+.+..++...|.|.-.+..+.++++.+ |..+.....||.+-++.|+.+.|..+|+..-+.    +.-.....++.+.+
T Consensus       180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a  259 (366)
T KOG2796|consen  180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA  259 (366)
T ss_pred             HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence            3456677888899999999999999987 667788889999999999999999999965443    33333346777788


Q ss_pred             HHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009850          124 DLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRAL  203 (524)
Q Consensus       124 ~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al  203 (524)
                      .+|...+++.+|...|.+++..                          ||.++.+.++.+.|++..|+..+|++..+.++
T Consensus       260 ~i~lg~nn~a~a~r~~~~i~~~--------------------------D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~  313 (366)
T KOG2796|consen  260 FLHLGQNNFAEAHRFFTEILRM--------------------------DPRNAVANNNKALCLLYLGKLKDALKQLEAMV  313 (366)
T ss_pred             hheecccchHHHHHHHhhcccc--------------------------CCCchhhhchHHHHHHHHHHHHHHHHHHHHHh
Confidence            8888889999999999999888                          99999999999999999999999999999999


Q ss_pred             hhCCCcHH----HHHHHHHH
Q 009850          204 SIAPDNNK----MCNLGICL  219 (524)
Q Consensus       204 ~l~P~~~~----~~~Lg~~~  219 (524)
                      ...|....    .+||-..|
T Consensus       314 ~~~P~~~l~es~~~nL~tmy  333 (366)
T KOG2796|consen  314 QQDPRHYLHESVLFNLTTMY  333 (366)
T ss_pred             ccCCccchhhhHHHHHHHHH
Confidence            99998644    45555554

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=97.99  E-value=0.00098  Score=70.37  Aligned_cols=250  Identities=15%  Similarity=0.083  Sum_probs=173.2

Q ss_pred             ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-------
Q 009850           45 GDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGD----RVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQ-------  113 (524)
Q Consensus        45 ~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p----~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~-------  113 (524)
                      -...|...|..|...|+.+.|...|+++.+..=    +-+..|...|..-.+..+++.|+.+.+++.......       
T Consensus       386 ~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~  465 (835)
T KOG2047|consen  386 PGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDN  465 (835)
T ss_pred             hhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcC
Confidence            344689999999999999999999999998742    336778889988889999999999999987653220       


Q ss_pred             ---HH------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccH------hhhcccHHHHHHHhHHHHHhc----CCC
Q 009850          114 ---AQ------ESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGL------AFNGKRTKTARSQGKKFQVSV----EQE  174 (524)
Q Consensus       114 ---~~------~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~------~~~~~~~~~a~~~~~~~~~~~----~p~  174 (524)
                         ++      ..+|..++++....|-++.....|++.+.+.-...      +..-..........+.++.++    -|.
T Consensus       466 ~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~  545 (835)
T KOG2047|consen  466 SEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPN  545 (835)
T ss_pred             CCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCcc
Confidence               11      35677888888889999999999999988752111      111011111111122222222    366


Q ss_pred             cHHHHHHHHHHHH---HcCCHHHHHHHHHHHHhhCCCcHH---HHHHHHHHHHcCCHHHHHHHHHHhcccccCCC-----
Q 009850          175 ATRLLGNLGWALM---QQNNYIEAEDAYRRALSIAPDNNK---MCNLGICLMKQGRIGEAKETLRRVKPAVADGP-----  243 (524)
Q Consensus       175 ~~~a~~~Lg~~~~---~~g~~~eAi~~~~~Al~l~P~~~~---~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~-----  243 (524)
                      -.+.|+..-.-+.   .....+.|...|++||+..|....   +...+..-.+-|-...|+..|++|........     
T Consensus       546 v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~my  625 (835)
T KOG2047|consen  546 VYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMY  625 (835)
T ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            6677766544333   234789999999999998874322   44556666677999999999999744333221     


Q ss_pred             ----------cCHHHHHHHHHHHHHhCCCCHHH--HHHHHHHHHHcCCHHHHHHHHhhcccCC
Q 009850          244 ----------RGVDSHLKAYERAQQMLKDLESE--MMNKGGDRVEQSRLFDAFLGSSSIWQPQ  294 (524)
Q Consensus       244 ----------~~~~~A~~~~~~al~~~p~~~~a--~~~lg~~~~~~g~~~eAi~~~~~al~~~  294 (524)
                                -+.......|+++++..|+....  ....+..-...|..+.|...|...-+.-
T Consensus       626 ni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~  688 (835)
T KOG2047|consen  626 NIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQIC  688 (835)
T ss_pred             HHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcC
Confidence                      01112357899999999987654  3455778888999999999988776653

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.98  E-value=0.00093  Score=72.99  Aligned_cols=175  Identities=16%  Similarity=0.081  Sum_probs=97.1

Q ss_pred             HHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHH
Q 009850           57 LVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQI  136 (524)
Q Consensus        57 ~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~  136 (524)
                      ...+++.+|+....+.++..|+...+...-|.++.++|+.++|..+++..-...+++.  .....+-.+|..+|++++|.
T Consensus        20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~--~tLq~l~~~y~d~~~~d~~~   97 (932)
T KOG2053|consen   20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDD--LTLQFLQNVYRDLGKLDEAV   97 (932)
T ss_pred             hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCch--HHHHHHHHHHHHHhhhhHHH
Confidence            4566777777777777777777777777777777777777777766665555555543  44455666777777777777


Q ss_pred             HHHHHHHHHhhccHhhhcccHHHH------HHHhH-HHH-HhcCCCcHHHHHHHHHHHHH-cCCHH---------HHHHH
Q 009850          137 ALLKHKLYLIQQGLAFNGKRTKTA------RSQGK-KFQ-VSVEQEATRLLGNLGWALMQ-QNNYI---------EAEDA  198 (524)
Q Consensus       137 ~~~~~al~l~~~~~~~~~~~~~~a------~~~~~-~~~-~~~~p~~~~a~~~Lg~~~~~-~g~~~---------eAi~~  198 (524)
                      .+|++++..++. ....-..+.+.      ....+ .++ ...-|..+..+...-.++++ ....+         -|...
T Consensus        98 ~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m  176 (932)
T KOG2053|consen   98 HLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKM  176 (932)
T ss_pred             HHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHH
Confidence            777777776543 11111000000      00000 000 11246665444443333333 32222         35556


Q ss_pred             HHHHHhhC-CCcHH--HHHHHHHHHHcCCHHHHHHHHHH
Q 009850          199 YRRALSIA-PDNNK--MCNLGICLMKQGRIGEAKETLRR  234 (524)
Q Consensus       199 ~~~Al~l~-P~~~~--~~~Lg~~~~~~G~~~eA~~~~~~  234 (524)
                      +++.++.. +-...  ....-.++..+|++++|...+..
T Consensus       177 ~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~  215 (932)
T KOG2053|consen  177 VQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAI  215 (932)
T ss_pred             HHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence            66666654 22211  34445566777888888888753

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.97  E-value=1.1e-05  Score=75.18  Aligned_cols=94  Identities=21%  Similarity=0.213  Sum_probs=86.7

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHH
Q 009850          180 GNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQ  258 (524)
Q Consensus       180 ~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~  258 (524)
                      ..-|+.++...+|..|+.+|.+++.++|..+. |.|.+.|++++.+|+.......                     ++++
T Consensus        14 kE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcr---------------------ralq   72 (284)
T KOG4642|consen   14 KEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCR---------------------RALQ   72 (284)
T ss_pred             HhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHH---------------------HHHh
Confidence            34577788889999999999999999999988 8899999999999999999988                     8999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCC
Q 009850          259 MLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQ  294 (524)
Q Consensus       259 ~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~  294 (524)
                      +.|+...+++.+|.++.....+++|+..+++++.+.
T Consensus        73 l~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~  108 (284)
T KOG4642|consen   73 LDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLL  108 (284)
T ss_pred             cChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHH
Confidence            999999999999999999999999999999986543

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=97.94  E-value=4.4e-05  Score=68.64  Aligned_cols=96  Identities=14%  Similarity=0.147  Sum_probs=77.5

Q ss_pred             CHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCH---HHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHH
Q 009850          191 NYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRI---GEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESE  266 (524)
Q Consensus       191 ~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~---~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a  266 (524)
                      -|+.|.+.++.....+|.+.+ +++-|.++..+.++   .++...++              +|+.-|++++.++|+...+
T Consensus         6 ~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~mie--------------dAisK~eeAL~I~P~~hdA   71 (186)
T PF06552_consen    6 FFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIE--------------DAISKFEEALKINPNKHDA   71 (186)
T ss_dssp             HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHH--------------HHHHHHHHHHHH-TT-HHH
T ss_pred             HHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHH--------------HHHHHHHHHHhcCCchHHH
Confidence            378999999999999999999 99999999888665   55777777              5788899999999999999


Q ss_pred             HHHHHHHHHHcCC-----------HHHHHHHHhhcccCCCCCCCc
Q 009850          267 MMNKGGDRVEQSR-----------LFDAFLGSSSIWQPQPCKDHI  300 (524)
Q Consensus       267 ~~~lg~~~~~~g~-----------~~eAi~~~~~al~~~P~~~~~  300 (524)
                      ++++|.+|..++.           |++|..+|+++...+|.+...
T Consensus        72 lw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y  116 (186)
T PF06552_consen   72 LWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELY  116 (186)
T ss_dssp             HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHH
T ss_pred             HHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHH
Confidence            9999999887776           577888999999999998763

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.94  E-value=0.0017  Score=70.16  Aligned_cols=170  Identities=11%  Similarity=0.023  Sum_probs=112.7

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 009850           48 PYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYK  127 (524)
Q Consensus        48 ~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~  127 (524)
                      .-...|....+.|..++|+.+|++.-+        +-.|-..|...|.+++|.+.-+.-=+++-.    ..++.++.-+.
T Consensus       802 ~eakvAvLAieLgMlEeA~~lYr~ckR--------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr----~Tyy~yA~~Le  869 (1416)
T KOG3617|consen  802 DEAKVAVLAIELGMLEEALILYRQCKR--------YDLLNKLYQSQGMWSEAFEIAETKDRIHLR----NTYYNYAKYLE  869 (1416)
T ss_pred             hhhHHHHHHHHHhhHHHHHHHHHHHHH--------HHHHHHHHHhcccHHHHHHHHhhccceehh----hhHHHHHHHHH
Confidence            344567777888999999999988633        446667888899999988776542222222    45566777788


Q ss_pred             HcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-
Q 009850          128 RCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIA-  206 (524)
Q Consensus       128 ~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-  206 (524)
                      ..++.+.|+++|+++-...-.-.............+.+      ...+...|...|..+...|+.+.|+.+|..|-... 
T Consensus       870 ar~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~------~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs  943 (1416)
T KOG3617|consen  870 ARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVR------RKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFS  943 (1416)
T ss_pred             hhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHH------hccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhh
Confidence            88999999999997632100000000001111111111      13445678888999999999999999998874321 


Q ss_pred             --------------------CCcHH-HHHHHHHHHHcCCHHHHHHHHHHh
Q 009850          207 --------------------PDNNK-MCNLGICLMKQGRIGEAKETLRRV  235 (524)
Q Consensus       207 --------------------P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a  235 (524)
                                          ..+.. -|.+|.-|...|++.+|+..|.+|
T Consensus       944 ~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrA  993 (1416)
T KOG3617|consen  944 MVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRA  993 (1416)
T ss_pred             heeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence                                22223 678999999999999999999986

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.92  E-value=2.6e-05  Score=54.03  Aligned_cols=42  Identities=14%  Similarity=0.128  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 009850           47 TPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAI   88 (524)
Q Consensus        47 ~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~   88 (524)
                      ++|+.+|..+...|++++|+..|+++++.+|+++.++..+|.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            567788888888888888888888888888888888887775

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.91  E-value=0.00057  Score=66.22  Aligned_cols=165  Identities=15%  Similarity=0.092  Sum_probs=116.9

Q ss_pred             CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 009850           42 VPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNI  121 (524)
Q Consensus        42 ~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~  121 (524)
                      .|...+.-+..+.-....|++.+|...|..++...|++.++...++.||...|+.+.|...+...-....+..+.. ...
T Consensus       130 ~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~-l~a  208 (304)
T COG3118         130 LPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHG-LQA  208 (304)
T ss_pred             cChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHH-HHH
Confidence            3445556677788889999999999999999999999999999999999999999999888776433322222111 111


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 009850          122 LLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRR  201 (524)
Q Consensus       122 lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~  201 (524)
                      ...++.+.....+... +.+.+..                          +|++..+-+.++..+...|++++|.+.+-.
T Consensus       209 ~i~ll~qaa~~~~~~~-l~~~~aa--------------------------dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~  261 (304)
T COG3118         209 QIELLEQAAATPEIQD-LQRRLAA--------------------------DPDDVEAALALADQLHLVGRNEAALEHLLA  261 (304)
T ss_pred             HHHHHHHHhcCCCHHH-HHHHHHh--------------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            1223333333333222 2222223                          899999999999999999999999999999


Q ss_pred             HHhhCCCcHH---HHHHHHHHHHcCCHHHHHHHHHH
Q 009850          202 ALSIAPDNNK---MCNLGICLMKQGRIGEAKETLRR  234 (524)
Q Consensus       202 Al~l~P~~~~---~~~Lg~~~~~~G~~~eA~~~~~~  234 (524)
                      .+..+.....   .-.+-.++...|..+.+...|++
T Consensus       262 ~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RR  297 (304)
T COG3118         262 LLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYRR  297 (304)
T ss_pred             HHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            9988755433   56666777777755555555553

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.90  E-value=0.0006  Score=72.59  Aligned_cols=169  Identities=21%  Similarity=0.269  Sum_probs=124.9

Q ss_pred             HhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHH--------HHHH----HcCCHHHHHHHHHHH
Q 009850           39 IHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMA--------IVMK----QQNRAEEAIEAIKSL  106 (524)
Q Consensus        39 ~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La--------~~~~----~~g~~~eAi~~~~~a  106 (524)
                      +..+|..   ...+-.+.--.||-+.++..+.++.+. ++--..+..|.        ..+.    .....+.|.+.+...
T Consensus       184 lSlLPp~---~~kll~~vGF~gdR~~GL~~L~~~~~~-~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~  259 (468)
T PF10300_consen  184 LSLLPPK---VLKLLSFVGFSGDRELGLRLLWEASKS-ENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEM  259 (468)
T ss_pred             HHhCCHH---HHHHHhhcCcCCcHHHHHHHHHHHhcc-CCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHH
Confidence            3445554   555556666789999999999999873 22211111111        1111    244678899999999


Q ss_pred             HHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHH
Q 009850          107 RSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWAL  186 (524)
Q Consensus       107 l~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~  186 (524)
                      .+..|+..  ......|.++...|+.++|++.|++++.....                      ...-..-.++.+|+++
T Consensus       260 ~~~yP~s~--lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~----------------------~~Ql~~l~~~El~w~~  315 (468)
T PF10300_consen  260 LKRYPNSA--LFLFFEGRLERLKGNLEEAIESFERAIESQSE----------------------WKQLHHLCYFELAWCH  315 (468)
T ss_pred             HHhCCCcH--HHHHHHHHHHHHhcCHHHHHHHHHHhccchhh----------------------HHhHHHHHHHHHHHHH
Confidence            99999987  45567799999999999999999998853100                      0111234789999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCcHH--HHHHHHHHHHcCCH-------HHHHHHHHHh
Q 009850          187 MQQNNYIEAEDAYRRALSIAPDNNK--MCNLGICLMKQGRI-------GEAKETLRRV  235 (524)
Q Consensus       187 ~~~g~~~eAi~~~~~Al~l~P~~~~--~~~Lg~~~~~~G~~-------~eA~~~~~~a  235 (524)
                      ..+++|++|..+|.+.++.+.-...  .|..|.|+...|+.       ++|...+.++
T Consensus       316 ~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v  373 (468)
T PF10300_consen  316 MFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV  373 (468)
T ss_pred             HHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence            9999999999999999998777666  67889999999999       7777777765

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.84  E-value=0.00064  Score=66.56  Aligned_cols=200  Identities=13%  Similarity=-0.010  Sum_probs=139.3

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHcC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 009850           50 VRAKNVQLVDKDPEKAIPLFWAAINAG---DRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLY  126 (524)
Q Consensus        50 ~~lg~~~~~~g~~~~Ai~~~~~al~~~---p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~  126 (524)
                      +.+|.+....+.--+=.+.++++..-.   ....+-...-+.++...|++.+|....++.++-.|.+-  ..+..--.++
T Consensus        70 ~a~gl~~iaa~s~v~~ak~~dqav~dav~y~~arEk~h~~aai~~~~g~~h~a~~~wdklL~d~PtDl--la~kfsh~a~  147 (491)
T KOG2610|consen   70 FALGLVLIAAASNVEFAKKMDQAVIDAVKYGNAREKRHAKAAILWGRGKHHEAAIEWDKLLDDYPTDL--LAVKFSHDAH  147 (491)
T ss_pred             HHHhhhhhhccchhhHHHHHHHHHHHHHHHhhhHHhhhhhHHHhhccccccHHHHHHHHHHHhCchhh--hhhhhhhhHH
Confidence            345555555554444444444443211   11113344456677888999999999999999999885  2333334566


Q ss_pred             HHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 009850          127 KRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIA  206 (524)
Q Consensus       127 ~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~  206 (524)
                      +..|+...-...+++.+-..+.+                      -|-...+.-.++..+...|-|++|++.-+++++++
T Consensus       148 fy~G~~~~~k~ai~kIip~wn~d----------------------lp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN  205 (491)
T KOG2610|consen  148 FYNGNQIGKKNAIEKIIPKWNAD----------------------LPCYSYVHGMYAFGLEECGIYDDAEKQADRALQIN  205 (491)
T ss_pred             HhccchhhhhhHHHHhccccCCC----------------------CcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCC
Confidence            77888888888888877542111                      13335677788999999999999999999999999


Q ss_pred             CCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 009850          207 PDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFL  285 (524)
Q Consensus       207 P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~  285 (524)
                      |.+.. ...++.++...|++.++.+...+........+  +               -...-|+.-+..+.+.+.|+.|+.
T Consensus       206 ~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~--m---------------lasHNyWH~Al~~iE~aeye~ale  268 (491)
T KOG2610|consen  206 RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSW--M---------------LASHNYWHTALFHIEGAEYEKALE  268 (491)
T ss_pred             CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhh--H---------------HHhhhhHHHHHhhhcccchhHHHH
Confidence            99988 88899999999999999999986433221111  0               011245677888889999999999


Q ss_pred             HHhhc
Q 009850          286 GSSSI  290 (524)
Q Consensus       286 ~~~~a  290 (524)
                      .|.+-
T Consensus       269 IyD~e  273 (491)
T KOG2610|consen  269 IYDRE  273 (491)
T ss_pred             HHHHH
Confidence            88643

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.84  E-value=3.5e-05  Score=53.38  Aligned_cols=41  Identities=29%  Similarity=0.261  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHH
Q 009850          177 RLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGI  217 (524)
Q Consensus       177 ~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~  217 (524)
                      .++..+|.+|..+|++++|+..|+++++.+|+++. |..+|.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            57899999999999999999999999999999999 888875

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.82  E-value=5.3e-05  Score=70.70  Aligned_cols=94  Identities=17%  Similarity=0.127  Sum_probs=86.5

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcC
Q 009850           51 RAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCG  130 (524)
Q Consensus        51 ~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g  130 (524)
                      .-|..++...+|..|+.+|.++|.++|..+.++.+.+.|++++.+++......++++++.|+..  ..++.+|.......
T Consensus        15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~v--k~h~flg~~~l~s~   92 (284)
T KOG4642|consen   15 EQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLV--KAHYFLGQWLLQSK   92 (284)
T ss_pred             hccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHH--HHHHHHHHHHHhhc
Confidence            3466778889999999999999999999999999999999999999999999999999999987  66788899999999


Q ss_pred             ChHHHHHHHHHHHHHh
Q 009850          131 RLDDQIALLKHKLYLI  146 (524)
Q Consensus       131 ~~~eA~~~~~~al~l~  146 (524)
                      .|++|+..+.++..+.
T Consensus        93 ~~~eaI~~Lqra~sl~  108 (284)
T KOG4642|consen   93 GYDEAIKVLQRAYSLL  108 (284)
T ss_pred             cccHHHHHHHHHHHHH
Confidence            9999999999997763

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.82  E-value=0.00051  Score=67.24  Aligned_cols=156  Identities=10%  Similarity=-0.008  Sum_probs=131.6

Q ss_pred             HHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCcHH-HHHHHHHHHHHHHcC
Q 009850           53 KNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSR-CSDQAQ-ESLDNILLDLYKRCG  130 (524)
Q Consensus        53 g~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~-~p~~~~-~~l~~~lg~~~~~~g  130 (524)
                      +.+....|++-+|...+++.++..|.+.-++..--.+++.+|+...-...+++.+.. +++.+- ..+.-+++-.+...|
T Consensus       110 aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g  189 (491)
T KOG2610|consen  110 AAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECG  189 (491)
T ss_pred             HHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhc
Confidence            345677889999999999999999999999888889999999999999999999887 666532 234456677788999


Q ss_pred             ChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc-
Q 009850          131 RLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDN-  209 (524)
Q Consensus       131 ~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~-  209 (524)
                      -|++|.+.-++++++                          ++.+..+...++.++...|++.++.+...+--..-... 
T Consensus       190 ~y~dAEk~A~ralqi--------------------------N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~  243 (491)
T KOG2610|consen  190 IYDDAEKQADRALQI--------------------------NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSW  243 (491)
T ss_pred             cchhHHHHHHhhccC--------------------------CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhh
Confidence            999999999999999                          89999999999999999999999999887765433322 


Q ss_pred             ---HH-HHHHHHHHHHcCCHHHHHHHHHH
Q 009850          210 ---NK-MCNLGICLMKQGRIGEAKETLRR  234 (524)
Q Consensus       210 ---~~-~~~Lg~~~~~~G~~~eA~~~~~~  234 (524)
                         .. |...+.++++.+.|+.|++.|.+
T Consensus       244 mlasHNyWH~Al~~iE~aeye~aleIyD~  272 (491)
T KOG2610|consen  244 MLASHNYWHTALFHIEGAEYEKALEIYDR  272 (491)
T ss_pred             HHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence               11 66789999999999999999987

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.74  E-value=0.0045  Score=57.92  Aligned_cols=195  Identities=11%  Similarity=0.034  Sum_probs=121.0

Q ss_pred             HHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CcHHHHHHHHHHHHHHHcCCh
Q 009850           57 LVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCS----DQAQESLDNILLDLYKRCGRL  132 (524)
Q Consensus        57 ~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p----~~~~~~l~~~lg~~~~~~g~~  132 (524)
                      .-.+.+++|.++|.++              |..|....++..|=..|.++-..+-    .+-....+...+.+| +.++.
T Consensus        25 gg~~k~eeAadl~~~A--------------an~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cy-kk~~~   89 (288)
T KOG1586|consen   25 GGSNKYEEAAELYERA--------------ANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCY-KKVDP   89 (288)
T ss_pred             CCCcchHHHHHHHHHH--------------HHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh-hccCh
Confidence            3445788888888776              3444555555555555555544322    111123444444454 45699


Q ss_pred             HHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCcHH
Q 009850          133 DDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQ-NNYIEAEDAYRRALSIAPDNNK  211 (524)
Q Consensus       133 ~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~-g~~~eAi~~~~~Al~l~P~~~~  211 (524)
                      .+|+.++++++++...--     +               -..-+..+..+|.+|... .++++|+.+|+++-+.......
T Consensus        90 ~eAv~cL~~aieIyt~~G-----r---------------f~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees  149 (288)
T KOG1586|consen   90 EEAVNCLEKAIEIYTDMG-----R---------------FTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEES  149 (288)
T ss_pred             HHHHHHHHHHHHHHHhhh-----H---------------HHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhh
Confidence            999999999998831100     0               011234567889888776 8999999999999876543311


Q ss_pred             -------HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 009850          212 -------MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAF  284 (524)
Q Consensus       212 -------~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi  284 (524)
                             +.-.+..-..+|+|.+|+..|+++.....++.            .+..  ......+.-|.+++...+.-.+.
T Consensus       150 ~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~------------LLKy--s~KdyflkAgLChl~~~D~v~a~  215 (288)
T KOG1586|consen  150 VSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNN------------LLKY--SAKDYFLKAGLCHLCKADEVNAQ  215 (288)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch------------HHHh--HHHHHHHHHHHHhHhcccHHHHH
Confidence                   34456666788999999999997532221111            0000  01123455678888888887777


Q ss_pred             HHHhhcccCCCCCCCc
Q 009850          285 LGSSSIWQPQPCKDHI  300 (524)
Q Consensus       285 ~~~~~al~~~P~~~~~  300 (524)
                      ..+++-.+.+|.....
T Consensus       216 ~ALeky~~~dP~F~ds  231 (288)
T KOG1586|consen  216 RALEKYQELDPAFTDS  231 (288)
T ss_pred             HHHHHHHhcCCccccc
Confidence            7777777888887663

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.73  E-value=0.0047  Score=57.84  Aligned_cols=170  Identities=19%  Similarity=0.220  Sum_probs=118.5

Q ss_pred             ChHHHHHHHHHHHHcCChHHHHHHHHHHHHc----CC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH---
Q 009850           45 GDTPYVRAKNVQLVDKDPEKAIPLFWAAINA----GD--RVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQ---  115 (524)
Q Consensus        45 ~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~----~p--~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~---  115 (524)
                      ..+.|...|+.|-...++..|-..|.++-..    +.  +.+..|...+.||.+ ++.++|+.++++++.+..+-++   
T Consensus        33 Aadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk-~~~~eAv~cL~~aieIyt~~Grf~~  111 (288)
T KOG1586|consen   33 AAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKK-VDPEEAVNCLEKAIEIYTDMGRFTM  111 (288)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHhhhHHHH
Confidence            4456778888888888999999888888764    22  234455566666665 5999999999999999876543   


Q ss_pred             -HHHHHHHHHHHHHc-CChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Q 009850          116 -ESLDNILLDLYKRC-GRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYI  193 (524)
Q Consensus       116 -~~l~~~lg~~~~~~-g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~  193 (524)
                       ...+..+|.+|... .++++|+.+|+++-+.+...-.                    ....-..+.-.+..-...++|.
T Consensus       112 aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees--------------------~ssANKC~lKvA~yaa~leqY~  171 (288)
T KOG1586|consen  112 AAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEES--------------------VSSANKCLLKVAQYAAQLEQYS  171 (288)
T ss_pred             HHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhh--------------------hhhHHHHHHHHHHHHHHHHHHH
Confidence             23445788888655 8999999999999776311000                    0111235556677777889999


Q ss_pred             HHHHHHHHHHhhCCCcHH--------HHHHHHHHHHcCCHHHHHHHHHHh
Q 009850          194 EAEDAYRRALSIAPDNNK--------MCNLGICLMKQGRIGEAKETLRRV  235 (524)
Q Consensus       194 eAi~~~~~Al~l~P~~~~--------~~~Lg~~~~~~G~~~eA~~~~~~a  235 (524)
                      +|+..|+++....-+++.        ++.-|.|++-..+.-.+...+++.
T Consensus       172 ~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky  221 (288)
T KOG1586|consen  172 KAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKY  221 (288)
T ss_pred             HHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHH
Confidence            999999999887666533        345677887767665555555543

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.72  E-value=7.4e-05  Score=48.40  Aligned_cols=34  Identities=44%  Similarity=0.611  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 009850          176 TRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDN  209 (524)
Q Consensus       176 ~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~  209 (524)
                      +.+|+++|.++..+|++++|+.+|+++++++|++
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            3589999999999999999999999999999975

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=97.71  E-value=0.0019  Score=66.74  Aligned_cols=143  Identities=15%  Similarity=0.102  Sum_probs=97.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHh
Q 009850           85 DMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQG  164 (524)
Q Consensus        85 ~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~  164 (524)
                      .+-.-..+..+...-+++-++|++++|+.+  .++..|+.-  ...-..+|..+|+++++.....+....    .....+
T Consensus       173 ~IMq~AWRERnp~aRIkaA~eALei~pdCA--dAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~----~~~~~g  244 (539)
T PF04184_consen  173 EIMQKAWRERNPQARIKAAKEALEINPDCA--DAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQ----FLQHHG  244 (539)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhhhhhh--HHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhh----hhhccc
Confidence            333444556678888888888899888876  565666532  345578888888888876432221100    000000


Q ss_pred             HHHHHhcC-CC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc-HH--HHHHHHHHHHcCCHHHHHHHHHHh
Q 009850          165 KKFQVSVE-QE--ATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDN-NK--MCNLGICLMKQGRIGEAKETLRRV  235 (524)
Q Consensus       165 ~~~~~~~~-p~--~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~-~~--~~~Lg~~~~~~G~~~eA~~~~~~a  235 (524)
                      ........ .-  ...+...+|.|..+.|+.++|++.|+..++..|.. ..  +.+|..++..++++.++...+.+.
T Consensus       245 ~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY  321 (539)
T PF04184_consen  245 HFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY  321 (539)
T ss_pred             chhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence            00000000 11  14466789999999999999999999999988864 33  899999999999999999999975

The molecular function of this protein is uncertain.

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.68  E-value=4.2e-05  Score=49.75  Aligned_cols=33  Identities=27%  Similarity=0.261  Sum_probs=29.7

Q ss_pred             HHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 009850           68 LFWAAINAGDRVDSALKDMAIVMKQQNRAEEAI  100 (524)
Q Consensus        68 ~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi  100 (524)
                      +|+++|+++|+++.+|++||.+|...|++++|+
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            478899999999999999999999999999886

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.68  E-value=0.036  Score=61.03  Aligned_cols=201  Identities=15%  Similarity=0.015  Sum_probs=126.1

Q ss_pred             HHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Q 009850           37 HAIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQE  116 (524)
Q Consensus        37 ~~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~  116 (524)
                      +.+.+.|....+-..-|...++.|+.++|..+++..-...+++...+..+-.||..+|++++|..+|++++..+|+.   
T Consensus        34 kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~e---  110 (932)
T KOG2053|consen   34 KLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPSE---  110 (932)
T ss_pred             HHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCcH---
Confidence            35567788888888889999999999999988888777788889999999999999999999999999999999983   


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHhhcc-Hhhh-----------------cccHHH-H-HHHhHHHHHhcC-CCc
Q 009850          117 SLDNILLDLYKRCGRLDDQIALLKHKLYLIQQG-LAFN-----------------GKRTKT-A-RSQGKKFQVSVE-QEA  175 (524)
Q Consensus       117 ~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~-~~~~-----------------~~~~~~-a-~~~~~~~~~~~~-p~~  175 (524)
                      .....+..+|.+.+.|.+-.+.--+..+..+.. ..++                 ....-. + ...+..+  ... +-.
T Consensus       111 ell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l--~~~gk~~  188 (932)
T KOG2053|consen  111 ELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLL--EKKGKIE  188 (932)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHh--ccCCccc
Confidence            444555566667777655333222211111110 0000                 000000 0 0111111  111 111


Q ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHH-HHHhhCCCcHH-HH-HHHHHHHHcCCHHHHHHHHHHhcccccCC
Q 009850          176 -TRLLGNLGWALMQQNNYIEAEDAYR-RALSIAPDNNK-MC-NLGICLMKQGRIGEAKETLRRVKPAVADG  242 (524)
Q Consensus       176 -~~a~~~Lg~~~~~~g~~~eAi~~~~-~Al~l~P~~~~-~~-~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~  242 (524)
                       ..=....-.++..+|.|++|.+.+. ...+..+..+. .. .-+..+..+++|.+-.+...+++...+++
T Consensus       189 s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Dd  259 (932)
T KOG2053|consen  189 SEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDD  259 (932)
T ss_pred             hHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcc
Confidence             1111223345667899999999994 33334444333 33 34555667788887777777766655554

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=97.63  E-value=0.0085  Score=62.11  Aligned_cols=134  Identities=16%  Similarity=0.134  Sum_probs=101.6

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------------
Q 009850           51 RAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSD------------------  112 (524)
Q Consensus        51 ~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~------------------  112 (524)
                      .+-....+..++.+-++.-++|++++|+.+.+|..||.-.  ..-..+|.++|+++++....                  
T Consensus       173 ~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~  250 (539)
T PF04184_consen  173 EIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAW  250 (539)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhh
Confidence            4455667889999999999999999999999999887522  12356677777776654221                  


Q ss_pred             -----cHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCC--cHHHHHHHHHH
Q 009850          113 -----QAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQE--ATRLLGNLGWA  185 (524)
Q Consensus       113 -----~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~--~~~a~~~Lg~~  185 (524)
                           ++...+...++.+..++|+.++|++.++..++.                          .|.  +..++.+|-.+
T Consensus       251 ~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke--------------------------~p~~~~l~IrenLie~  304 (539)
T PF04184_consen  251 HRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKE--------------------------FPNLDNLNIRENLIEA  304 (539)
T ss_pred             hccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhh--------------------------CCccchhhHHHHHHHH
Confidence                 111344567899999999999999999999987                          443  46799999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhh-CCCcHHH
Q 009850          186 LMQQNNYIEAEDAYRRALSI-APDNNKM  212 (524)
Q Consensus       186 ~~~~g~~~eAi~~~~~Al~l-~P~~~~~  212 (524)
                      +...+.|.++...+.+--.+ -|+...+
T Consensus       305 LLelq~Yad~q~lL~kYdDi~lpkSAti  332 (539)
T PF04184_consen  305 LLELQAYADVQALLAKYDDISLPKSATI  332 (539)
T ss_pred             HHhcCCHHHHHHHHHHhccccCCchHHH
Confidence            99999999999998886433 2555553

The molecular function of this protein is uncertain.

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.63  E-value=0.0013  Score=65.25  Aligned_cols=133  Identities=10%  Similarity=0.065  Sum_probs=74.1

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 009850           49 YVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQ-QNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYK  127 (524)
Q Consensus        49 ~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~-~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~  127 (524)
                      |..+.....+.+..+.|...|.+|++..+-....|...|.+-+. .++.+.|...|+.+++..|.+.  .+|..+.+.+.
T Consensus         4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~--~~~~~Y~~~l~   81 (280)
T PF05843_consen    4 WIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDP--DFWLEYLDFLI   81 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-H--HHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHH
Confidence            55555555555556666666666664444455666666666444 3444446666666666666665  44555555666


Q ss_pred             HcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009850          128 RCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEA---TRLLGNLGWALMQQNNYIEAEDAYRRALS  204 (524)
Q Consensus       128 ~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~---~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~  204 (524)
                      ..|+.+.|..+|++++..                          -|..   ..+|......-...|+.+....+++++.+
T Consensus        82 ~~~d~~~aR~lfer~i~~--------------------------l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~  135 (280)
T PF05843_consen   82 KLNDINNARALFERAISS--------------------------LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE  135 (280)
T ss_dssp             HTT-HHHHHHHHHHHCCT--------------------------SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred             HhCcHHHHHHHHHHHHHh--------------------------cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            666666666666666544                          1211   23555555555566666666666666666


Q ss_pred             hCCCc
Q 009850          205 IAPDN  209 (524)
Q Consensus       205 l~P~~  209 (524)
                      ..|+.
T Consensus       136 ~~~~~  140 (280)
T PF05843_consen  136 LFPED  140 (280)
T ss_dssp             HTTTS
T ss_pred             Hhhhh
Confidence            65553

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.62  E-value=0.00014  Score=46.90  Aligned_cols=34  Identities=35%  Similarity=0.480  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 009850          176 TRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDN  209 (524)
Q Consensus       176 ~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~  209 (524)
                      +.+|+.+|.+++..|++++|+.+|+++++++|++
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            3588999999999999999999999999999985

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=97.62  E-value=0.0054  Score=61.41  Aligned_cols=201  Identities=15%  Similarity=0.068  Sum_probs=141.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhH
Q 009850           86 MAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGK  165 (524)
Q Consensus        86 La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~  165 (524)
                      -|.+-...|+-..|.+.-.++-++-..+....++..-++.-.-.|++++|.+-|+.++..                    
T Consensus        90 tGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d--------------------  149 (531)
T COG3898          90 TGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD--------------------  149 (531)
T ss_pred             hhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC--------------------
Confidence            356666678888888888887755444432344455556666789999999988877642                    


Q ss_pred             HHHHhcCCCcHHHHHHHHH--HHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCC
Q 009850          166 KFQVSVEQEATRLLGNLGW--ALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADG  242 (524)
Q Consensus       166 ~~~~~~~p~~~~a~~~Lg~--~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~  242 (524)
                             |+. ..+-..|.  --.+.|..+.|+.+-+++-...|.-+. +...-...+..|+|+.|++..+.........
T Consensus       150 -------PEt-RllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie  221 (531)
T COG3898         150 -------PET-RLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIE  221 (531)
T ss_pred             -------hHH-HHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhc
Confidence                   332 12222222  224678888888888888888888877 6666667778888998888887753222111


Q ss_pred             C--------------------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCccc
Q 009850          243 P--------------------RGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILP  302 (524)
Q Consensus       243 ~--------------------~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~l~  302 (524)
                      .                    .+...|...-.++.++.|++..+-.--+..+++.|+..++-...+.+|+..|...-   
T Consensus       222 ~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i---  298 (531)
T COG3898         222 KDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI---  298 (531)
T ss_pred             hhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH---
Confidence            1                    23345666777899999999999999999999999999999999999999985432   


Q ss_pred             ccccccccccccccccc
Q 009850          303 TTNAIKTRDDFADENID  319 (524)
Q Consensus       303 ~~~l~~~~q~lgd~~~~  319 (524)
                        .+.|.+..-||+...
T Consensus       299 --a~lY~~ar~gdta~d  313 (531)
T COG3898         299 --ALLYVRARSGDTALD  313 (531)
T ss_pred             --HHHHHHhcCCCcHHH
Confidence              356666666776654

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.57  E-value=0.00047  Score=64.71  Aligned_cols=105  Identities=17%  Similarity=0.209  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCcHH-----------HHHHHHHHHHcCCHHHHHHHHHHhc
Q 009850          176 TRLLGNLGWALMQQNNYIEAEDAYRRALSI--------APDNNK-----------MCNLGICLMKQGRIGEAKETLRRVK  236 (524)
Q Consensus       176 ~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--------~P~~~~-----------~~~Lg~~~~~~G~~~eA~~~~~~a~  236 (524)
                      ..++..-|+-+++.|+|.+|...|+.|+-.        .|..+.           +.|...|+...|+|-++++...   
T Consensus       178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~s---  254 (329)
T KOG0545|consen  178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCS---  254 (329)
T ss_pred             hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHH---
Confidence            457888899999999999999999999742        354432           5688889999999988888888   


Q ss_pred             ccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCcc
Q 009850          237 PAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL  301 (524)
Q Consensus       237 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~l  301 (524)
                                        ..+...|.+..+++.+|.++...-+..+|...+..++.++|....++
T Consensus       255 ------------------eiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvV  301 (329)
T KOG0545|consen  255 ------------------EILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVV  301 (329)
T ss_pred             ------------------HHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHH
Confidence                              78889999999999999999999999999999999999999877654

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.49  E-value=0.00012  Score=47.63  Aligned_cols=26  Identities=23%  Similarity=0.282  Sum_probs=24.6

Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHH
Q 009850          172 EQEATRLLGNLGWALMQQNNYIEAED  197 (524)
Q Consensus       172 ~p~~~~a~~~Lg~~~~~~g~~~eAi~  197 (524)
                      +|+++.+|++||.+|...|++++|++
T Consensus         9 ~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    9 NPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             CCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            99999999999999999999999963

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.44  E-value=0.0038  Score=58.82  Aligned_cols=115  Identities=17%  Similarity=0.170  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 009850          117 SLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAE  196 (524)
Q Consensus       117 ~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi  196 (524)
                      .+...-|.-++..|+|.+|...|+.|+... ..+.+..+..+..-       +.++......+.|++.|+...|+|-+++
T Consensus       179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l-~~L~lkEkP~e~eW-------~eLdk~~tpLllNy~QC~L~~~e~yevl  250 (329)
T KOG0545|consen  179 PVLHQEGNRLFKLGRYKEASSKYREAIICL-RNLQLKEKPGEPEW-------LELDKMITPLLLNYCQCLLKKEEYYEVL  250 (329)
T ss_pred             HHHHHhhhhhhhhccHHHHHHHHHHHHHHH-HHHHhccCCCChHH-------HHHHHhhhHHHHhHHHHHhhHHHHHHHH
Confidence            344566777889999999999999998652 11111111000000       0001222357889999999999999999


Q ss_pred             HHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccc
Q 009850          197 DAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAV  239 (524)
Q Consensus       197 ~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~  239 (524)
                      ++....|...|.+.. ++..|.+....=+.++|...|..++..+
T Consensus       251 eh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld  294 (329)
T KOG0545|consen  251 EHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD  294 (329)
T ss_pred             HHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence            999999999999999 9999999999989999999999544433

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.43  E-value=0.00084  Score=68.71  Aligned_cols=158  Identities=13%  Similarity=0.090  Sum_probs=118.4

Q ss_pred             HHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCC------cHHHHHHHHHHHHHH
Q 009850           55 VQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSL-RSRCSD------QAQESLDNILLDLYK  127 (524)
Q Consensus        55 ~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~a-l~~~p~------~~~~~l~~~lg~~~~  127 (524)
                      .++...+..-+..-...+.....+.+.++...+..++..|+|..|.+.+... +...|.      -.....|+.+|.+++
T Consensus       215 ~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~  294 (696)
T KOG2471|consen  215 FLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHY  294 (696)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEee
Confidence            4466667777888888888888889999999999999999999999988653 222222      112356689999999


Q ss_pred             HcCChHHHHHHHHHHHH-Hhh-ccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 009850          128 RCGRLDDQIALLKHKLY-LIQ-QGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSI  205 (524)
Q Consensus       128 ~~g~~~eA~~~~~~al~-l~~-~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l  205 (524)
                      +.|.|.-+..+|.++++ ... ....+.......          -.....-.++||.|..|...|+.-.|.++|.+++..
T Consensus       295 ~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t----------ls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v  364 (696)
T KOG2471|consen  295 QLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT----------LSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV  364 (696)
T ss_pred             ehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee----------hhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH
Confidence            99999999999999996 210 000000000000          002234678999999999999999999999999999


Q ss_pred             CCCcHH-HHHHHHHHHHc
Q 009850          206 APDNNK-MCNLGICLMKQ  222 (524)
Q Consensus       206 ~P~~~~-~~~Lg~~~~~~  222 (524)
                      ...+|. |..++.|++..
T Consensus       365 fh~nPrlWLRlAEcCima  382 (696)
T KOG2471|consen  365 FHRNPRLWLRLAECCIMA  382 (696)
T ss_pred             HhcCcHHHHHHHHHHHHH
Confidence            999999 99999998654

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.40  E-value=0.00035  Score=45.13  Aligned_cols=31  Identities=23%  Similarity=0.104  Sum_probs=15.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 009850           82 ALKDMAIVMKQQNRAEEAIEAIKSLRSRCSD  112 (524)
Q Consensus        82 a~~~La~~~~~~g~~~eAi~~~~~al~~~p~  112 (524)
                      +|+.+|.++..+|++++|+..|+++++++|+
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            4445555555555555555555555555443

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.35  E-value=0.00051  Score=44.21  Aligned_cols=31  Identities=23%  Similarity=0.077  Sum_probs=14.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 009850           82 ALKDMAIVMKQQNRAEEAIEAIKSLRSRCSD  112 (524)
Q Consensus        82 a~~~La~~~~~~g~~~eAi~~~~~al~~~p~  112 (524)
                      +++.+|.++..+|++++|+.+|++++.++|+
T Consensus         3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~   33 (34)
T PF07719_consen    3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence            4444455555555555555555555544443

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.33  E-value=0.01  Score=52.46  Aligned_cols=60  Identities=32%  Similarity=0.350  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHh
Q 009850          176 TRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRV  235 (524)
Q Consensus       176 ~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a  235 (524)
                      ..++..++..+...|++++|+..+++++..+|.+.. |..+-.+|...|+..+|+..|++.
T Consensus        62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~  122 (146)
T PF03704_consen   62 LDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERY  122 (146)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence            346778889999999999999999999999999988 999999999999999999999974

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.33  E-value=0.013  Score=55.33  Aligned_cols=171  Identities=16%  Similarity=0.149  Sum_probs=116.5

Q ss_pred             ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--HH-
Q 009850           45 GDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRV------DSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQ--AQ-  115 (524)
Q Consensus        45 ~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~------~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~--~~-  115 (524)
                      ..+.|...+..+....+|++|-.++.++++-..++      +.++-..|.+...+..+.++..+|+++..+.-.+  +. 
T Consensus        30 aas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gspdt  109 (308)
T KOG1585|consen   30 AASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDT  109 (308)
T ss_pred             hHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcch
Confidence            45678888999999999999999999999654333      3445567788888899999999999988775321  10 


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Q 009850          116 ESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEA  195 (524)
Q Consensus       116 ~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eA  195 (524)
                      .......+--..+.-+.++|+++|++++.+...+-     +               .....+.+...+.++.+..+|.+|
T Consensus       110 AAmaleKAak~lenv~Pd~AlqlYqralavve~~d-----r---------------~~ma~el~gk~sr~lVrl~kf~Ea  169 (308)
T KOG1585|consen  110 AAMALEKAAKALENVKPDDALQLYQRALAVVEEDD-----R---------------DQMAFELYGKCSRVLVRLEKFTEA  169 (308)
T ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccc-----h---------------HHHHHHHHHHhhhHhhhhHHhhHH
Confidence            01111122223466789999999999988721100     0               011244667788999999999999


Q ss_pred             HHHHHHHHhh----CCCcHH---HHHHHHHHHHcCCHHHHHHHHHHh
Q 009850          196 EDAYRRALSI----APDNNK---MCNLGICLMKQGRIGEAKETLRRV  235 (524)
Q Consensus       196 i~~~~~Al~l----~P~~~~---~~~Lg~~~~~~G~~~eA~~~~~~a  235 (524)
                      -..+.+-..+    +..+..   +.....+|....+|..|..+|+..
T Consensus       170 a~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~  216 (308)
T KOG1585|consen  170 ATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDC  216 (308)
T ss_pred             HHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcch
Confidence            8888765433    222222   444555566667999999999863

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=97.32  E-value=0.00032  Score=71.94  Aligned_cols=94  Identities=14%  Similarity=-0.001  Sum_probs=86.1

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHc
Q 009850           50 VRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRC  129 (524)
Q Consensus        50 ~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~  129 (524)
                      -..+...+..++|+.|+..|.+||+++|+++..+.+.+.++.+.+++..|+..+.++++.+|...  ..++..|..++.+
T Consensus         8 k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~--K~Y~rrg~a~m~l   85 (476)
T KOG0376|consen    8 KNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYI--KAYVRRGTAVMAL   85 (476)
T ss_pred             hhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhh--heeeeccHHHHhH
Confidence            34566778899999999999999999999999999999999999999999999999999999887  6777778889999


Q ss_pred             CChHHHHHHHHHHHHH
Q 009850          130 GRLDDQIALLKHKLYL  145 (524)
Q Consensus       130 g~~~eA~~~~~~al~l  145 (524)
                      +++.+|...|+....+
T Consensus        86 ~~~~~A~~~l~~~~~l  101 (476)
T KOG0376|consen   86 GEFKKALLDLEKVKKL  101 (476)
T ss_pred             HHHHHHHHHHHHhhhc
Confidence            9999999999998888

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.29  E-value=0.027  Score=53.24  Aligned_cols=177  Identities=11%  Similarity=0.045  Sum_probs=120.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH--H--HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhccc
Q 009850           81 SALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQA--Q--ESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKR  156 (524)
Q Consensus        81 ~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~--~--~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~  156 (524)
                      ..|..-+.+|+..++|++|...+.++.+-...+.  +  ...+-..+.+......+.++..+|+++..++.         
T Consensus        32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~---------  102 (308)
T KOG1585|consen   32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYV---------  102 (308)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH---------
Confidence            3455567888999999999999999986655431  1  22333455566778899999999999988731         


Q ss_pred             HHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH------H-HHHHHHHHHHcCCHHHHH
Q 009850          157 TKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNN------K-MCNLGICLMKQGRIGEAK  229 (524)
Q Consensus       157 ~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~------~-~~~Lg~~~~~~G~~~eA~  229 (524)
                                  ....|+.+..-...+.-....-+.++|+..|++++.+-....      . +...+.++.+..++.+|-
T Consensus       103 ------------E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa  170 (308)
T KOG1585|consen  103 ------------ECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAA  170 (308)
T ss_pred             ------------HhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHH
Confidence                        111455544444444445577899999999999988643331      1 556788899999999998


Q ss_pred             HHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccC
Q 009850          230 ETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQP  293 (524)
Q Consensus       230 ~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~  293 (524)
                      ..+.+-..               ...-....++.-..+...-.+|.-..+|..|..+|+...+.
T Consensus       171 ~a~lKe~~---------------~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qi  219 (308)
T KOG1585|consen  171 TAFLKEGV---------------AADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQI  219 (308)
T ss_pred             HHHHHhhh---------------HHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcC
Confidence            88875211               11222333444445555556777778999999999876554

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.29  E-value=0.0083  Score=58.99  Aligned_cols=99  Identities=19%  Similarity=0.133  Sum_probs=82.7

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCc-HHHHHHHHHHHHHcCCHHHH
Q 009850          117 SLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEA-TRLLGNLGWALMQQNNYIEA  195 (524)
Q Consensus       117 ~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~-~~a~~~Lg~~~~~~g~~~eA  195 (524)
                      .-+.--|.-|++..+|..|+.+|.+.|...                       .-+|+- +..|.|.+.+....|+|..|
T Consensus        82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~k-----------------------c~D~dlnavLY~NRAAa~~~l~NyRs~  138 (390)
T KOG0551|consen   82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKK-----------------------CADPDLNAVLYTNRAAAQLYLGNYRSA  138 (390)
T ss_pred             HHHHHHhHHHHHhhhHHHHHHHHHHHHhhc-----------------------CCCccHHHHHHhhHHHHHHHHHHHHHH
Confidence            334456788888999999999999998772                       113433 66888999999999999999


Q ss_pred             HHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhccc
Q 009850          196 EDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPA  238 (524)
Q Consensus       196 i~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~  238 (524)
                      +..+.+++.++|.+.. ++.-+.|+..+.++.+|..+++..+..
T Consensus       139 l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~  182 (390)
T KOG0551|consen  139 LNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQI  182 (390)
T ss_pred             HHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhh
Confidence            9999999999999999 888999999999999999999976443

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.26  E-value=0.0056  Score=60.75  Aligned_cols=125  Identities=13%  Similarity=0.036  Sum_probs=97.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHhhccHhhhcccHHHH
Q 009850           82 ALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKR-CGRLDDQIALLKHKLYLIQQGLAFNGKRTKTA  160 (524)
Q Consensus        82 a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~-~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a  160 (524)
                      +|..+.....+.+..+.|...|.+|.+..+...  .+|...|.+.+. .++.+.|...|+.+++.               
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~--~vy~~~A~~E~~~~~d~~~A~~Ife~glk~---------------   65 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTY--HVYVAYALMEYYCNKDPKRARKIFERGLKK---------------   65 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-T--HHHHHHHHHHHHTCS-HHHHHHHHHHHHHH---------------
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH---------------
Confidence            566777788888889999999999985444333  677777888666 45666699999999988               


Q ss_pred             HHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH-H---HHHHHHHHHHcCCHHHHHHHHHH
Q 009850          161 RSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNN-K---MCNLGICLMKQGRIGEAKETLRR  234 (524)
Q Consensus       161 ~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~-~---~~~Lg~~~~~~G~~~eA~~~~~~  234 (524)
                                 -|.+...|..+...+...|+.+.|...|++++..-|... .   |......-.+.|+.+....++++
T Consensus        66 -----------f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R  132 (280)
T PF05843_consen   66 -----------FPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKR  132 (280)
T ss_dssp             -----------HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHH
T ss_pred             -----------CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence                       688999999999999999999999999999999888776 2   66666777778888877777773

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.26  E-value=0.036  Score=56.58  Aligned_cols=185  Identities=16%  Similarity=0.122  Sum_probs=127.9

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHHHH---cCChHHHHHHHHHHHHHhhccHh
Q 009850           79 VDSALKDMAIVMKQQNRAEEAIEAIKSLRSRC----SDQAQESLDNILLDLYKR---CGRLDDQIALLKHKLYLIQQGLA  151 (524)
Q Consensus        79 ~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~----p~~~~~~l~~~lg~~~~~---~g~~~eA~~~~~~al~l~~~~~~  151 (524)
                      .++...++=..|+...+|+.=+++.+..-.+.    ++..  .+...+|-++.+   .|+.++|+..+..++...     
T Consensus       140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~--~i~~~yafALnRrn~~gdre~Al~il~~~l~~~-----  212 (374)
T PF13281_consen  140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQH--NIKFQYAFALNRRNKPGDREKALQILLPVLESD-----  212 (374)
T ss_pred             ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcch--HHHHHHHHHHhhcccCCCHHHHHHHHHHHHhcc-----
Confidence            34556777788999999999999998876662    2333  455666777777   899999999999865441     


Q ss_pred             hhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHc
Q 009850          152 FNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQ---------NNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQ  222 (524)
Q Consensus       152 ~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~---------g~~~eAi~~~~~Al~l~P~~~~~~~Lg~~~~~~  222 (524)
                                          .+.+++++..+|.+|-..         ...++|+.+|.++.+++|+.-.-.|++.++...
T Consensus       213 --------------------~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~  272 (374)
T PF13281_consen  213 --------------------ENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLA  272 (374)
T ss_pred             --------------------CCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHc
Confidence                                567788999999887532         247899999999999997665577888888888


Q ss_pred             CCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCC
Q 009850          223 GRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  299 (524)
Q Consensus       223 G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~  299 (524)
                      |...+....++++.-..         +...-++.....-.+-..+-.++.+..-.|+++.|+..+++++...|..+.
T Consensus       273 g~~~~~~~el~~i~~~l---------~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~  340 (374)
T PF13281_consen  273 GHDFETSEELRKIGVKL---------SSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWE  340 (374)
T ss_pred             CCcccchHHHHHHHHHH---------HHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchh
Confidence            87555444444321000         000000111111122233455667888899999999999999999887776

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.25  E-value=0.024  Score=51.89  Aligned_cols=98  Identities=17%  Similarity=0.123  Sum_probs=50.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHH
Q 009850           85 DMAIVMKQQNRAEEAIEAIKSLRSRCSDQA-QESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQ  163 (524)
Q Consensus        85 ~La~~~~~~g~~~eAi~~~~~al~~~p~~~-~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~  163 (524)
                      .++..+...|++++|+..++.++....+.. ...+...|+.+....|.+++|+..+......                  
T Consensus        94 ~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~------------------  155 (207)
T COG2976          94 ELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEE------------------  155 (207)
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc------------------
Confidence            345555566666666666666655443331 1233345555666666666666555432211                  


Q ss_pred             hHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 009850          164 GKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDN  209 (524)
Q Consensus       164 ~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~  209 (524)
                               .-.+..-...|.++...|+-++|...|+++++..++.
T Consensus       156 ---------~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~  192 (207)
T COG2976         156 ---------SWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP  192 (207)
T ss_pred             ---------cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence                     0012233445666666666666666666666655433

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.24  E-value=0.0084  Score=58.94  Aligned_cols=97  Identities=8%  Similarity=-0.001  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHcC---CC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 009850           47 TPYVRAKNVQLVDKDPEKAIPLFWAAINAG---DR-VDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNIL  122 (524)
Q Consensus        47 ~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~---p~-~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~l  122 (524)
                      ..|-.-|+-|+...+|..|+..|.+.|+..   |+ +...|.+.|.+...+|+|..|+....+++.++|.+.  .+++.-
T Consensus        82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~--Ka~~R~  159 (390)
T KOG0551|consen   82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHL--KAYIRG  159 (390)
T ss_pred             HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchh--hhhhhh
Confidence            346678999999999999999999999974   33 345688999999999999999999999999999997  666777


Q ss_pred             HHHHHHcCChHHHHHHHHHHHHH
Q 009850          123 LDLYKRCGRLDDQIALLKHKLYL  145 (524)
Q Consensus       123 g~~~~~~g~~~eA~~~~~~al~l  145 (524)
                      +.++..+.++++|..+.+..+++
T Consensus       160 Akc~~eLe~~~~a~nw~ee~~~~  182 (390)
T KOG0551|consen  160 AKCLLELERFAEAVNWCEEGLQI  182 (390)
T ss_pred             hHHHHHHHHHHHHHHHHhhhhhh
Confidence            88899999999999999988776

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.22  E-value=0.0056  Score=65.24  Aligned_cols=123  Identities=15%  Similarity=-0.016  Sum_probs=101.5

Q ss_pred             HcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHHHcCChHHH
Q 009850           58 VDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSD--QAQESLDNILLDLYKRCGRLDDQ  135 (524)
Q Consensus        58 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~--~~~~~l~~~lg~~~~~~g~~~eA  135 (524)
                      ...+.+.|..++.......|+..-.++..|.++...|+.++|++.|++++.....  ..+..+++.++.++..+++|++|
T Consensus       245 ~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A  324 (468)
T PF10300_consen  245 EDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA  324 (468)
T ss_pred             cCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence            3567789999999999999999999999999999999999999999998854332  23345677889999999999999


Q ss_pred             HHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCC-cHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHhhC
Q 009850          136 IALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQE-ATRLLGNLGWALMQQNNY-------IEAEDAYRRALSIA  206 (524)
Q Consensus       136 ~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~-~~~a~~~Lg~~~~~~g~~-------~eAi~~~~~Al~l~  206 (524)
                      ..+|.+.++.                          +.- .+-..+..|.++...|+.       ++|...|.++-.+.
T Consensus       325 ~~~f~~L~~~--------------------------s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~  377 (468)
T PF10300_consen  325 AEYFLRLLKE--------------------------SKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK  377 (468)
T ss_pred             HHHHHHHHhc--------------------------cccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence            9999999876                          322 244667889999999999       88888888776543

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=97.18  E-value=0.0029  Score=66.12  Aligned_cols=90  Identities=17%  Similarity=0.164  Sum_probs=61.7

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHcCCCcH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Q 009850           51 RAKNVQLVDKDPEKAIPLFWAAINAGDRVD--SALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKR  128 (524)
Q Consensus        51 ~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~--~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~  128 (524)
                      ..+..+..+|+..+|+.++..++-..|.+.  -++..+|.++.+.|...+|--.+..|+...|...  .-++.++.++..
T Consensus       218 ~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t--~n~y~l~~i~am  295 (886)
T KOG4507|consen  218 MASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADFFT--SNYYTLGNIYAM  295 (886)
T ss_pred             HHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCcccc--ccceeHHHHHHH
Confidence            344455668999999999999998866543  3577889999999999999888888877766332  113444555555


Q ss_pred             cCChHHHHHHHHHH
Q 009850          129 CGRLDDQIALLKHK  142 (524)
Q Consensus       129 ~g~~~eA~~~~~~a  142 (524)
                      +|.+.....+|..+
T Consensus       296 l~~~N~S~~~ydha  309 (886)
T KOG4507|consen  296 LGEYNHSVLCYDHA  309 (886)
T ss_pred             Hhhhhhhhhhhhhh
Confidence            55555544444443

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.16  E-value=0.012  Score=52.14  Aligned_cols=95  Identities=19%  Similarity=0.171  Sum_probs=74.2

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHcCCC----------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009850           49 YVRAKNVQLVDKDPEKAIPLFWAAINAGDR----------------------VDSALKDMAIVMKQQNRAEEAIEAIKSL  106 (524)
Q Consensus        49 ~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~----------------------~~~a~~~La~~~~~~g~~~eAi~~~~~a  106 (524)
                      +...|......|+.+.++..+.+++.+-.+                      ...++..++..+...|++++|+..++++
T Consensus         9 ~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~   88 (146)
T PF03704_consen    9 LVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRA   88 (146)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            344566677889999999999999986211                      1123456788888999999999999999


Q ss_pred             HHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 009850          107 RSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYL  145 (524)
Q Consensus       107 l~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l  145 (524)
                      +..+|.+.  .++..+..+|...|+..+|+..|+++...
T Consensus        89 l~~dP~~E--~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~  125 (146)
T PF03704_consen   89 LALDPYDE--EAYRLLMRALAAQGRRAEALRVYERYRRR  125 (146)
T ss_dssp             HHHSTT-H--HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HhcCCCCH--HHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence            99999886  67788899999999999999999998765

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=97.16  E-value=0.00038  Score=71.44  Aligned_cols=98  Identities=15%  Similarity=0.207  Sum_probs=72.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHh
Q 009850          181 NLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQM  259 (524)
Q Consensus       181 ~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~  259 (524)
                      +-+.-.+..+.|+.|+..|.+|++++|++.. +-+.+.++.+.+++..|+..+.                     ++++.
T Consensus         9 ~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~---------------------kaie~   67 (476)
T KOG0376|consen    9 NEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDAL---------------------KAIEL   67 (476)
T ss_pred             hHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHH---------------------hhhhc
Confidence            4456666777888888888888888888877 7778888888888888888777                     66666


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCC
Q 009850          260 LKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  299 (524)
Q Consensus       260 ~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~  299 (524)
                      +|....+|+..|.+.+..+++.+|+..|+......|+...
T Consensus        68 dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~  107 (476)
T KOG0376|consen   68 DPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPD  107 (476)
T ss_pred             CchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHH
Confidence            6777777777777777777777777777766666666554

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.11  E-value=0.0061  Score=62.64  Aligned_cols=105  Identities=9%  Similarity=0.001  Sum_probs=76.8

Q ss_pred             CCCChHHHHHHHHHHHHcCChHHHHHHHHHH-HHcCCC--------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Q 009850           42 VPVGDTPYVRAKNVQLVDKDPEKAIPLFWAA-INAGDR--------VDSALKDMAIVMKQQNRAEEAIEAIKSLRSR---  109 (524)
Q Consensus        42 ~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~a-l~~~p~--------~~~a~~~La~~~~~~g~~~eAi~~~~~al~~---  109 (524)
                      -...+.+.+.-...++..|++.+|.+.+-.. +...|.        ..-.|.+||-+++++|.|.-+..+|.++++.   
T Consensus       236 a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~  315 (696)
T KOG2471|consen  236 AQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCS  315 (696)
T ss_pred             cCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHH
Confidence            3455666777788889999999999877543 222232        1233678999999999999999999999861   


Q ss_pred             ------CCC-------cHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Q 009850          110 ------CSD-------QAQESLDNILLDLYKRCGRLDDQIALLKHKLYLI  146 (524)
Q Consensus       110 ------~p~-------~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~  146 (524)
                            .|.       +-...+.+..|..|...|+.-.|.++|.+++...
T Consensus       316 qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vf  365 (696)
T KOG2471|consen  316 QLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVF  365 (696)
T ss_pred             HHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHH
Confidence                  111       1124567788889999999999999999987665

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.98  E-value=0.051  Score=60.55  Aligned_cols=144  Identities=16%  Similarity=0.209  Sum_probs=72.8

Q ss_pred             ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 009850           45 GDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLD  124 (524)
Q Consensus        45 ~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~  124 (524)
                      .++.|..+|...+..|...+|++.|-++     +++..|.....+..+.|.|++-+.++..+-+.....   .+-..|..
T Consensus      1103 ~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~---~id~eLi~ 1174 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREP---YIDSELIF 1174 (1666)
T ss_pred             ChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCc---cchHHHHH
Confidence            3445666666666666666666666544     445555555566666666666666665554433221   11112222


Q ss_pred             HHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009850          125 LYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALS  204 (524)
Q Consensus       125 ~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~  204 (524)
                      .|.+.++..+-.+++.                               .|+.+ -.-..|.-++..|.|+.|.-.|...- 
T Consensus      1175 AyAkt~rl~elE~fi~-------------------------------gpN~A-~i~~vGdrcf~~~~y~aAkl~y~~vS- 1221 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFIA-------------------------------GPNVA-NIQQVGDRCFEEKMYEAAKLLYSNVS- 1221 (1666)
T ss_pred             HHHHhchHHHHHHHhc-------------------------------CCCch-hHHHHhHHHhhhhhhHHHHHHHHHhh-
Confidence            2334455444333221                               23332 22345555556666666655554221 


Q ss_pred             hCCCcHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 009850          205 IAPDNNKMCNLGICLMKQGRIGEAKETLRRV  235 (524)
Q Consensus       205 l~P~~~~~~~Lg~~~~~~G~~~eA~~~~~~a  235 (524)
                            .|..|+..+..+|+|..|+..-++|
T Consensus      1222 ------N~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1222 ------NFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred             ------hHHHHHHHHHHHHHHHHHHHHhhhc
Confidence                  1555666666666666666665554

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.97  E-value=0.0014  Score=42.17  Aligned_cols=33  Identities=36%  Similarity=0.498  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 009850          177 RLLGNLGWALMQQNNYIEAEDAYRRALSIAPDN  209 (524)
Q Consensus       177 ~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~  209 (524)
                      .+|+.+|.+|...|++++|+.+|+++++++|++
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            478999999999999999999999999999853

...

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.91  E-value=0.028  Score=54.72  Aligned_cols=124  Identities=16%  Similarity=0.172  Sum_probs=97.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCC-CcCHHHH----
Q 009850          176 TRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADG-PRGVDSH----  249 (524)
Q Consensus       176 ~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~-~~~~~~A----  249 (524)
                      ...-+.-+.-....|++.+|...|..++...|++.. ...++.||...|+.++|...+...-...... +......    
T Consensus       134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll  213 (304)
T COG3118         134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELL  213 (304)
T ss_pred             HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHH
Confidence            334556677788999999999999999999999988 8899999999999999999998742222111 1111111    


Q ss_pred             --------HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCC
Q 009850          250 --------LKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  299 (524)
Q Consensus       250 --------~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~  299 (524)
                              ...+++.+..+|++..+.+.++..+...|+.++|...+-..++.+-....
T Consensus       214 ~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d  271 (304)
T COG3118         214 EQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFED  271 (304)
T ss_pred             HHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccC
Confidence                    24566777889999999999999999999999999998888777654433

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.88  E-value=0.048  Score=49.95  Aligned_cols=97  Identities=19%  Similarity=0.139  Sum_probs=76.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH----HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHH
Q 009850          178 LLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK----MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAY  253 (524)
Q Consensus       178 a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~----~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~  253 (524)
                      +...++..+...|++++|+..++.++....+..-    -.+||.+...+|.+++|+..+.....                
T Consensus        91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~----------------  154 (207)
T COG2976          91 AALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE----------------  154 (207)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc----------------
Confidence            4567788899999999999999999974444322    56899999999999999999985321                


Q ss_pred             HHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCC
Q 009850          254 ERAQQMLKDLE-SEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCK  297 (524)
Q Consensus       254 ~~al~~~p~~~-~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~  297 (524)
                             +.+. ..-...|.++...|+..+|+..|++++...+..
T Consensus       155 -------~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~  192 (207)
T COG2976         155 -------ESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP  192 (207)
T ss_pred             -------ccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence                   1122 233556999999999999999999999887543

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=96.85  E-value=0.11  Score=51.63  Aligned_cols=143  Identities=16%  Similarity=0.091  Sum_probs=100.0

Q ss_pred             HHHHHHHHHHHHc----CChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHH
Q 009850           47 TPYVRAKNVQLVD----KDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQ----QNRAEEAIEAIKSLRSRCSDQAQESL  118 (524)
Q Consensus        47 ~~~~~lg~~~~~~----g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~----~g~~~eAi~~~~~al~~~p~~~~~~l  118 (524)
                      .+.+.+|.++...    .+..+|+.+|+.+  ....++.+.+.||.+|..    ..++.+|..+|+++........ ...
T Consensus        74 ~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~--a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a-~~~  150 (292)
T COG0790          74 AALALLGQMYGAGKGVSRDKTKAADWYRCA--AADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEA-ALA  150 (292)
T ss_pred             HHHHHHHHHHHhccCccccHHHHHHHHHHH--hhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhH-HHH
Confidence            4667777776553    4577888888844  455667788888888877    4488888888888888755442 123


Q ss_pred             HHHHHHHHHHcC-------ChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHH---
Q 009850          119 DNILLDLYKRCG-------RLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQ---  188 (524)
Q Consensus       119 ~~~lg~~~~~~g-------~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~---  188 (524)
                      ...++..|..-.       +...|...|.++-..                            .++.+.+++|.+|..   
T Consensus       151 ~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~----------------------------~~~~a~~~lg~~y~~G~G  202 (292)
T COG0790         151 MYRLGLAYLSGLQALAVAYDDKKALYLYRKAAEL----------------------------GNPDAQLLLGRMYEKGLG  202 (292)
T ss_pred             HHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHh----------------------------cCHHHHHHHHHHHHcCCC
Confidence            455555554431       223566666666554                            477899999988865   


Q ss_pred             -cCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcC
Q 009850          189 -QNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQG  223 (524)
Q Consensus       189 -~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G  223 (524)
                       ..++.+|+.+|.++-+...  .. .++++ ++...|
T Consensus       203 v~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g  236 (292)
T COG0790         203 VPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG  236 (292)
T ss_pred             CCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence             3489999999999999877  55 78888 777666

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=96.82  E-value=0.034  Score=59.79  Aligned_cols=225  Identities=12%  Similarity=0.018  Sum_probs=110.1

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCC
Q 009850           52 AKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGR  131 (524)
Q Consensus        52 lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~  131 (524)
                      .+.-|...|+|+.|.++|.++        .....--..|-+.|+|++|.++-+++..  |... ..++...+.-+...|+
T Consensus       771 iadhyan~~dfe~ae~lf~e~--------~~~~dai~my~k~~kw~da~kla~e~~~--~e~t-~~~yiakaedldehgk  839 (1636)
T KOG3616|consen  771 IADHYANKGDFEIAEELFTEA--------DLFKDAIDMYGKAGKWEDAFKLAEECHG--PEAT-ISLYIAKAEDLDEHGK  839 (1636)
T ss_pred             HHHHhccchhHHHHHHHHHhc--------chhHHHHHHHhccccHHHHHHHHHHhcC--chhH-HHHHHHhHHhHHhhcc
Confidence            344444455555555555443        1111122334445555555554444322  2111 2455555666667777


Q ss_pred             hHHHHHHHHH------HHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009850          132 LDDQIALLKH------KLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEA-TRLLGNLGWALMQQNNYIEAEDAYRRALS  204 (524)
Q Consensus       132 ~~eA~~~~~~------al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~-~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~  204 (524)
                      |.+|.++|-.      +++++.     ..++.+....+....    .|+. .+.+..+|.-|...|+..+|...|-++-.
T Consensus       840 f~eaeqlyiti~~p~~aiqmyd-----k~~~~ddmirlv~k~----h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d  910 (1636)
T KOG3616|consen  840 FAEAEQLYITIGEPDKAIQMYD-----KHGLDDDMIRLVEKH----HGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD  910 (1636)
T ss_pred             hhhhhheeEEccCchHHHHHHH-----hhCcchHHHHHHHHh----ChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh
Confidence            7777766632      222211     112333332222221    4444 46778888888888888888888877643


Q ss_pred             hCCC------cHHHHH---H-------------HHHHHHcCCHHHHHHHHHHh--c---ccccCCCcCHHHHHHHHHHHH
Q 009850          205 IAPD------NNKMCN---L-------------GICLMKQGRIGEAKETLRRV--K---PAVADGPRGVDSHLKAYERAQ  257 (524)
Q Consensus       205 l~P~------~~~~~~---L-------------g~~~~~~G~~~eA~~~~~~a--~---~~~~~~~~~~~~A~~~~~~al  257 (524)
                      ....      ...|..   +             +..+.+.=--+.|+..+.+.  +   -.+.-+.+.++-|...-+-  
T Consensus       911 ~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari--  988 (1636)
T KOG3616|consen  911 FKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARI--  988 (1636)
T ss_pred             HHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHH--
Confidence            2211      000110   0             11111111112233333221  0   0000111222223222222  


Q ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCC
Q 009850          258 QMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKD  298 (524)
Q Consensus       258 ~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~  298 (524)
                      ......+.++..++..+...|++++|-..|-.+++++..+-
T Consensus       989 ~~k~k~~~vhlk~a~~ledegk~edaskhyveaiklntyni 1029 (1636)
T KOG3616|consen  989 AAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYNI 1029 (1636)
T ss_pred             hhhccCccchhHHhhhhhhccchhhhhHhhHHHhhcccccc
Confidence            22345567899999999999999999999999998876543

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.81  E-value=0.16  Score=55.43  Aligned_cols=215  Identities=14%  Similarity=0.034  Sum_probs=142.2

Q ss_pred             ChHHHHHHHHHHHHc-----CChHHHHHHHHHHHHc-----CCCcHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHh
Q 009850           45 GDTPYVRAKNVQLVD-----KDPEKAIPLFWAAINA-----GDRVDSALKDMAIVMKQQN-----RAEEAIEAIKSLRSR  109 (524)
Q Consensus        45 ~~~~~~~lg~~~~~~-----g~~~~Ai~~~~~al~~-----~p~~~~a~~~La~~~~~~g-----~~~eAi~~~~~al~~  109 (524)
                      ...+.+.+|.+++.-     .|.+.|+.+|..+...     .-.++.+.+.+|.+|.+..     ++..|+.+|.++...
T Consensus       243 ~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~  322 (552)
T KOG1550|consen  243 HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL  322 (552)
T ss_pred             chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc
Confidence            445677888887654     6899999999999871     1125668889999999854     678899999999988


Q ss_pred             CCCcHHHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHH
Q 009850          110 CSDQAQESLDNILLDLYKRCG---RLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWAL  186 (524)
Q Consensus       110 ~p~~~~~~l~~~lg~~~~~~g---~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~  186 (524)
                      ...++    .+.+|.+|....   ++..|..+|..|...                            ++..+.+.+|.+|
T Consensus       323 g~~~a----~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~----------------------------G~~~A~~~la~~y  370 (552)
T KOG1550|consen  323 GNPDA----QYLLGVLYETGTKERDYRRAFEYYSLAAKA----------------------------GHILAIYRLALCY  370 (552)
T ss_pred             CCchH----HHHHHHHHHcCCccccHHHHHHHHHHHHHc----------------------------CChHHHHHHHHHH
Confidence            77664    255676666544   467899999888754                            6788889999888


Q ss_pred             HHc----CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH-cCCHHHHHHHHHHhc----------------ccccCC---
Q 009850          187 MQQ----NNYIEAEDAYRRALSIAPDNNKMCNLGICLMK-QGRIGEAKETLRRVK----------------PAVADG---  242 (524)
Q Consensus       187 ~~~----g~~~eAi~~~~~Al~l~P~~~~~~~Lg~~~~~-~G~~~eA~~~~~~a~----------------~~~~~~---  242 (524)
                      ..-    .+...|..+|+++.+.++-.. ...++..+.. .+++..+...+....                +.....   
T Consensus       371 ~~G~gv~r~~~~A~~~~k~aA~~g~~~A-~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~  449 (552)
T KOG1550|consen  371 ELGLGVERNLELAFAYYKKAAEKGNPSA-AYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSR  449 (552)
T ss_pred             HhCCCcCCCHHHHHHHHHHHHHccChhh-HHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhcccccccc
Confidence            753    478999999999998873221 2222222211 155555444443320                000000   


Q ss_pred             --CcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHhhcccCC
Q 009850          243 --PRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQ----SRLFDAFLGSSSIWQPQ  294 (524)
Q Consensus       243 --~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~----g~~~eAi~~~~~al~~~  294 (524)
                        ......+...+.++..  ..+..+...+|.+|..-    .++..|...|..+-...
T Consensus       450 ~~~~~~~~~~~~~~~a~~--~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~  505 (552)
T KOG1550|consen  450 GVISTLERAFSLYSRAAA--QGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG  505 (552)
T ss_pred             ccccchhHHHHHHHHHHh--ccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh
Confidence              1233444444444443  45566778888877654    34788888888887766

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=96.76  E-value=0.37  Score=47.84  Aligned_cols=164  Identities=16%  Similarity=0.054  Sum_probs=116.3

Q ss_pred             HHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH--
Q 009850           55 VQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQ----NRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKR--  128 (524)
Q Consensus        55 ~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~----g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~--  128 (524)
                      .....+++..|+..+..+-..  .+..+...++.+|..-    .+..+|+.+|+.+....  .+  ...+.||.+|..  
T Consensus        50 ~~~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g--~~--~a~~~lg~~~~~G~  123 (292)
T COG0790          50 GSAYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADG--LA--EALFNLGLMYANGR  123 (292)
T ss_pred             cccccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc--cH--HHHHhHHHHHhcCC
Confidence            345678899999999888763  2337788888888764    36888999999554433  32  344667777765  


Q ss_pred             --cCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHH---HHHHHHHHHHcC-------CHHHHH
Q 009850          129 --CGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRL---LGNLGWALMQQN-------NYIEAE  196 (524)
Q Consensus       129 --~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a---~~~Lg~~~~~~g-------~~~eAi  196 (524)
                        ..++.+|..+|+++.+.                            ++..+   .+.+|.+|..-.       +...|+
T Consensus       124 gv~~d~~~A~~~~~~Aa~~----------------------------g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~  175 (292)
T COG0790         124 GVPLDLVKALKYYEKAAKL----------------------------GNVEAALAMYRLGLAYLSGLQALAVAYDDKKAL  175 (292)
T ss_pred             CcccCHHHHHHHHHHHHHc----------------------------CChhHHHHHHHHHHHHHcChhhhcccHHHHhHH
Confidence              44899999999999876                            33334   788888887641       334799


Q ss_pred             HHHHHHHhhCCCcHH-HHHHHHHHHHc----CCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 009850          197 DAYRRALSIAPDNNK-MCNLGICLMKQ----GRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKG  271 (524)
Q Consensus       197 ~~~~~Al~l~P~~~~-~~~Lg~~~~~~----G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg  271 (524)
                      ..|.++-...  ++. .+++|.+|..-    .++.+|..+|.                     ++.+...  ..+.+.++
T Consensus       176 ~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~---------------------~Aa~~g~--~~a~~~~~  230 (292)
T COG0790         176 YLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYK---------------------KAAEQGD--GAACYNLG  230 (292)
T ss_pred             HHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHH---------------------HHHHCCC--HHHHHHHH
Confidence            9999988766  445 77888777552    37778888887                     5555544  67788888


Q ss_pred             HHHHHcC
Q 009850          272 GDRVEQS  278 (524)
Q Consensus       272 ~~~~~~g  278 (524)
                       ++...|
T Consensus       231 -~~~~~g  236 (292)
T COG0790         231 -LMYLNG  236 (292)
T ss_pred             -HHHhcC
Confidence             666666

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.74  E-value=0.0014  Score=64.51  Aligned_cols=87  Identities=15%  Similarity=0.096  Sum_probs=47.7

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhc
Q 009850           92 QQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSV  171 (524)
Q Consensus        92 ~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~  171 (524)
                      ..|.++.|++.|..++.++|...  .++...+.++..+++...|+.-+..++.+                          
T Consensus       126 n~G~~~~ai~~~t~ai~lnp~~a--~l~~kr~sv~lkl~kp~~airD~d~A~ei--------------------------  177 (377)
T KOG1308|consen  126 NDGEFDTAIELFTSAIELNPPLA--ILYAKRASVFLKLKKPNAAIRDCDFAIEI--------------------------  177 (377)
T ss_pred             cCcchhhhhcccccccccCCchh--hhcccccceeeeccCCchhhhhhhhhhcc--------------------------
Confidence            34455555555555555555554  34444455555555555555555555555                          


Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 009850          172 EQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIA  206 (524)
Q Consensus       172 ~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~  206 (524)
                      +|+...-|-..|.+...+|+|++|...+..+.+++
T Consensus       178 n~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld  212 (377)
T KOG1308|consen  178 NPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLD  212 (377)
T ss_pred             CcccccccchhhHHHHHhhchHHHHHHHHHHHhcc
Confidence            55555555555555555555555555555555554

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.72  E-value=0.00077  Score=66.34  Aligned_cols=87  Identities=20%  Similarity=0.134  Sum_probs=80.8

Q ss_pred             HHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 009850          127 KRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIA  206 (524)
Q Consensus       127 ~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~  206 (524)
                      ...|.++.|++.|..++.+                          +|..+..|...+.++.+++++..|+..|..+++++
T Consensus       125 ln~G~~~~ai~~~t~ai~l--------------------------np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein  178 (377)
T KOG1308|consen  125 LNDGEFDTAIELFTSAIEL--------------------------NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN  178 (377)
T ss_pred             hcCcchhhhhccccccccc--------------------------CCchhhhcccccceeeeccCCchhhhhhhhhhccC
Confidence            3578899999999999999                          99999999999999999999999999999999999


Q ss_pred             CCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccc
Q 009850          207 PDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAV  239 (524)
Q Consensus       207 P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~  239 (524)
                      |+... |-..|.+...+|+|++|..+++.+....
T Consensus       179 ~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld  212 (377)
T KOG1308|consen  179 PDSAKGYKFRGYAERLLGNWEEAAHDLALACKLD  212 (377)
T ss_pred             cccccccchhhHHHHHhhchHHHHHHHHHHHhcc
Confidence            99998 8889999999999999999999875544

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.72  E-value=0.27  Score=50.95  Aligned_cols=165  Identities=18%  Similarity=0.104  Sum_probs=115.0

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHc---CCC-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHH
Q 009850           51 RAKNVQLVDKDPEKAIPLFWAAINA---GDR-------VDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSD-QAQESLD  119 (524)
Q Consensus        51 ~lg~~~~~~g~~~~Ai~~~~~al~~---~p~-------~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~-~~~~~l~  119 (524)
                      .+..+-+..|++.+|++....+.+.   .|.       .+..++.+|.-...-|.++.|...|..+.+.... +.+..+.
T Consensus       328 ~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~n  407 (629)
T KOG2300|consen  328 HIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCN  407 (629)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            4556677889999999988888764   343       3455777888888889999999999999887653 4445566


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHhhcc-HhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 009850          120 NILLDLYKRCGRLDDQIALLKHKLYLIQQG-LAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDA  198 (524)
Q Consensus       120 ~~lg~~~~~~g~~~eA~~~~~~al~l~~~~-~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~  198 (524)
                      ..++..|.+.|+-+.-.+.++.   +.+.+ ..+..                 .-....+++..|...+.++++.||...
T Consensus       408 lnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ss-----------------q~l~a~~~~v~glfaf~qn~lnEaK~~  467 (629)
T KOG2300|consen  408 LNLAISYLRIGDAEDLYKALDL---IGPLNTNSLSS-----------------QRLEASILYVYGLFAFKQNDLNEAKRF  467 (629)
T ss_pred             HhHHHHHHHhccHHHHHHHHHh---cCCCCCCcchH-----------------HHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            6788889887775543333322   21110 00000                 000135788889999999999999999


Q ss_pred             HHHHHhhCCCc--H---H--HHHHHHHHHHcCCHHHHHHHHHHh
Q 009850          199 YRRALSIAPDN--N---K--MCNLGICLMKQGRIGEAKETLRRV  235 (524)
Q Consensus       199 ~~~Al~l~P~~--~---~--~~~Lg~~~~~~G~~~eA~~~~~~a  235 (524)
                      +.+.++.....  .   .  +..||.+....|+..++.....-+
T Consensus       468 l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpa  511 (629)
T KOG2300|consen  468 LRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPA  511 (629)
T ss_pred             HHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchH
Confidence            99999976211  1   1  456888889999999988877643

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=96.69  E-value=0.098  Score=53.44  Aligned_cols=170  Identities=12%  Similarity=0.015  Sum_probs=109.4

Q ss_pred             ChHHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCcHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCC-CcHHH
Q 009850           45 GDTPYVRAKNVQLVDKDPEKAIPLFWAAINA----GDRVDSALKDMAIVMKQ---QNRAEEAIEAIKSLRSRCS-DQAQE  116 (524)
Q Consensus        45 ~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~----~p~~~~a~~~La~~~~~---~g~~~eAi~~~~~al~~~p-~~~~~  116 (524)
                      .++...++=..|....+|+.=+.+.+..-..    -++.....+.+|.++.+   .|+.++|+..+..++.... .++  
T Consensus       140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~--  217 (374)
T PF13281_consen  140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDP--  217 (374)
T ss_pred             ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCCh--
Confidence            3344556666777778888888777776655    45566778889999999   9999999999999655443 444  


Q ss_pred             HHHHHHHHHHHHc---------CChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHH
Q 009850          117 SLDNILLDLYKRC---------GRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALM  187 (524)
Q Consensus       117 ~l~~~lg~~~~~~---------g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~  187 (524)
                      ..+..+|.+|...         ...++|+.+|+++.++                          +| +...-.|++.++.
T Consensus       218 d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--------------------------~~-~~Y~GIN~AtLL~  270 (374)
T PF13281_consen  218 DTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--------------------------EP-DYYSGINAATLLM  270 (374)
T ss_pred             HHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--------------------------Cc-cccchHHHHHHHH
Confidence            6667777776432         2367888888888877                          32 2223356666666


Q ss_pred             HcCCHHHHHHHHHHHH--------hh---CCCc-HH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCC
Q 009850          188 QQNNYIEAEDAYRRAL--------SI---APDN-NK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGP  243 (524)
Q Consensus       188 ~~g~~~eAi~~~~~Al--------~l---~P~~-~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~  243 (524)
                      ..|.-.+...-.++..        +.   .+.. -. +..++.+..-.|++++|+..++++....+..|
T Consensus       271 ~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W  339 (374)
T PF13281_consen  271 LAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW  339 (374)
T ss_pred             HcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence            6665333222222211        11   1111 11 45677888889999999999997655555544

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=96.66  E-value=0.044  Score=58.97  Aligned_cols=191  Identities=13%  Similarity=0.048  Sum_probs=102.3

Q ss_pred             HHHHHHHHcCC-hHHHHHHHHHHHHcCCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----------------
Q 009850           51 RAKNVQLVDKD-PEKAIPLFWAAINAGDRVDS-ALKDMAIVMKQQNRAEEAIEAIKSLRSRCS-----------------  111 (524)
Q Consensus        51 ~lg~~~~~~g~-~~~Ai~~~~~al~~~p~~~~-a~~~La~~~~~~g~~~eAi~~~~~al~~~p-----------------  111 (524)
                      .-+.-++++|+ |.+|+++.+-+.   |.... .-...|.-+.+.|+++.|+.+|-.+-.+-.                 
T Consensus       678 dkale~fkkgdaf~kaielarfaf---p~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaieaai~akew~kai~i  754 (1636)
T KOG3616|consen  678 DKALECFKKGDAFGKAIELARFAF---PEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIEAAIGAKEWKKAISI  754 (1636)
T ss_pred             HHHHHHHHcccHHHHHHHHHHhhC---cHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHhH
Confidence            34556677766 567777665543   33222 223456777778888888877755421100                 


Q ss_pred             ------CcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHH
Q 009850          112 ------DQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWA  185 (524)
Q Consensus       112 ------~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~  185 (524)
                            .......+-..++-|...|+|+-|.++|.++-.                                  ...--..
T Consensus       755 ldniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~----------------------------------~~dai~m  800 (1636)
T KOG3616|consen  755 LDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADL----------------------------------FKDAIDM  800 (1636)
T ss_pred             HHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcch----------------------------------hHHHHHH
Confidence                  000001222334444455555555555544321                                  1222344


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCcHH--HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHH--------
Q 009850          186 LMQQNNYIEAEDAYRRALSIAPDNNK--MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYER--------  255 (524)
Q Consensus       186 ~~~~g~~~eAi~~~~~Al~l~P~~~~--~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~--------  255 (524)
                      |-+.|+|++|...-.+..  .|+...  |...+.-+-+.|+|.+|.+.|-.+        +..+.|+..|.+        
T Consensus       801 y~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti--------~~p~~aiqmydk~~~~ddmi  870 (1636)
T KOG3616|consen  801 YGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITI--------GEPDKAIQMYDKHGLDDDMI  870 (1636)
T ss_pred             HhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEc--------cCchHHHHHHHhhCcchHHH
Confidence            566777877777665554  355444  667777788888888888777543        122233333322        


Q ss_pred             --HHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHh
Q 009850          256 --AQQMLKDL-ESEMMNKGGDRVEQSRLFDAFLGSS  288 (524)
Q Consensus       256 --al~~~p~~-~~a~~~lg~~~~~~g~~~eAi~~~~  288 (524)
                        .-...++. .+.+..+|.-|...|++..|...|-
T Consensus       871 rlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~fl  906 (1636)
T KOG3616|consen  871 RLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFL  906 (1636)
T ss_pred             HHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHH
Confidence              11223332 3466777777777777777766543

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=96.64  E-value=0.0081  Score=63.23  Aligned_cols=110  Identities=22%  Similarity=0.079  Sum_probs=87.2

Q ss_pred             CCCcHHHHHH--HHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHH
Q 009850          172 EQEATRLLGN--LGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDS  248 (524)
Q Consensus       172 ~p~~~~a~~~--Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~  248 (524)
                      +|.++..+..  +...+...+....+...+..++..+|++.. +.+||.+....|....+...+.+              
T Consensus        61 ~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~--------------  126 (620)
T COG3914          61 NDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISE--------------  126 (620)
T ss_pred             CCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHH--------------
Confidence            6666655332  577788889999999999999999999988 99999999888888777777664              


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHH------HHHHHHcCCHHHHHHHHhhcccCCCCCCCcc
Q 009850          249 HLKAYERAQQMLKDLESEMMNK------GGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL  301 (524)
Q Consensus       249 A~~~~~~al~~~p~~~~a~~~l------g~~~~~~g~~~eAi~~~~~al~~~P~~~~~l  301 (524)
                            .+....|.+......+      |.....+|+..++.....++....|.+...+
T Consensus       127 ------~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~  179 (620)
T COG3914         127 ------IAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVL  179 (620)
T ss_pred             ------HHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhH
Confidence                  4555666666554444      8888888999999999999999999887765

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.58  E-value=0.0041  Score=39.94  Aligned_cols=30  Identities=20%  Similarity=0.181  Sum_probs=15.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 009850           82 ALKDMAIVMKQQNRAEEAIEAIKSLRSRCS  111 (524)
Q Consensus        82 a~~~La~~~~~~g~~~eAi~~~~~al~~~p  111 (524)
                      +|+.+|.+|..+|++++|+.+|+++++++|
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            444555555555555555555555555444

...

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=96.55  E-value=0.016  Score=46.78  Aligned_cols=80  Identities=24%  Similarity=0.234  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 009850           65 AIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLY  144 (524)
Q Consensus        65 Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~  144 (524)
                      .+..+++.+..+|++.++.+.+|..+...|++++|++.+-.+++.+++.........+..++..+|.-+.-...|++-+.
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL~   86 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKLA   86 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            46678899999999999999999999999999999999999999998652224555666777777887776667776553

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=96.53  E-value=0.38  Score=48.72  Aligned_cols=160  Identities=11%  Similarity=0.020  Sum_probs=112.7

Q ss_pred             HHHhcCCCChHHHHHHHHHHHHcCC------------hHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 009850           37 HAIHKVPVGDTPYVRAKNVQLVDKD------------PEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIK  104 (524)
Q Consensus        37 ~~~~~~p~~~~~~~~lg~~~~~~g~------------~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~  104 (524)
                      ..+...|.+.++|..+....-..-.            .+.-+.+|++||+.+|++...+..+-.+..+..+.++..+-++
T Consensus        10 ~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we   89 (321)
T PF08424_consen   10 RRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWE   89 (321)
T ss_pred             HHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            4556778888899888765544322            5677889999999999999999988888889999999999999


Q ss_pred             HHHHhCCCcHHHHHHHHHHHHHH---HcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHH
Q 009850          105 SLRSRCSDQAQESLDNILLDLYK---RCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGN  181 (524)
Q Consensus       105 ~al~~~p~~~~~~l~~~lg~~~~---~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~  181 (524)
                      +++..+|++.  .+|..+.+...   ..-.++.....|.+++........-.........        ..+-.-..++..
T Consensus        90 ~~l~~~~~~~--~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~--------~~e~~~l~v~~r  159 (321)
T PF08424_consen   90 ELLFKNPGSP--ELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLP--------ELEEFMLYVFLR  159 (321)
T ss_pred             HHHHHCCCCh--HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchh--------hHHHHHHHHHHH
Confidence            9999999886  55554443322   2345789999999998763111110000000000        000112346677


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhC
Q 009850          182 LGWALMQQNNYIEAEDAYRRALSIA  206 (524)
Q Consensus       182 Lg~~~~~~g~~~eAi~~~~~Al~l~  206 (524)
                      +...+.+.|..+.|+..++..++++
T Consensus       160 ~~~fl~~aG~~E~Ava~~Qa~lE~n  184 (321)
T PF08424_consen  160 LCRFLRQAGYTERAVALWQALLEFN  184 (321)
T ss_pred             HHHHHHHCCchHHHHHHHHHHHHHH
Confidence            8888889999999999999999976

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.50  E-value=0.13  Score=53.18  Aligned_cols=199  Identities=15%  Similarity=0.090  Sum_probs=133.4

Q ss_pred             HcCChHHHHHHHHHHHHc------CCCcHH--------HHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCc-----HH
Q 009850           58 VDKDPEKAIPLFWAAINA------GDRVDS--------ALKDMAIVMKQQNRAEEAIEAIKSLRSRC---SDQ-----AQ  115 (524)
Q Consensus        58 ~~g~~~~Ai~~~~~al~~------~p~~~~--------a~~~La~~~~~~g~~~eAi~~~~~al~~~---p~~-----~~  115 (524)
                      ..|-+++|.++-+++|..      .+....        .+..+..|-.-.|++.+|++.+..+....   |..     ..
T Consensus       287 ~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~  366 (629)
T KOG2300|consen  287 PAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHE  366 (629)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhH
Confidence            445566666666666654      121222        23456777778899999999888776654   431     11


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCc--HHHHHHHHHHHHHcCCHH
Q 009850          116 ESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEA--TRLLGNLGWALMQQNNYI  193 (524)
Q Consensus       116 ~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~--~~a~~~Lg~~~~~~g~~~  193 (524)
                      ..++..+|.....-|.++.|...|..++++.                         +..+  +-+..+++..|.+.|+-+
T Consensus       367 ~~ih~LlGlys~sv~~~enAe~hf~~a~k~t-------------------------~~~dl~a~~nlnlAi~YL~~~~~e  421 (629)
T KOG2300|consen  367 AQIHMLLGLYSHSVNCYENAEFHFIEATKLT-------------------------ESIDLQAFCNLNLAISYLRIGDAE  421 (629)
T ss_pred             HHHHHHHhhHhhhcchHHHHHHHHHHHHHhh-------------------------hHHHHHHHHHHhHHHHHHHhccHH
Confidence            4577788877788899999999999998872                         1112  335568899999977654


Q ss_pred             HHHHHHHHHHhhCCCc----------HH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCC
Q 009850          194 EAEDAYRRALSIAPDN----------NK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKD  262 (524)
Q Consensus       194 eAi~~~~~Al~l~P~~----------~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~  262 (524)
                      .   +|+-.-.+.|.+          .. ++..|...+.++++.||...+.+.+...               .+.....-
T Consensus       422 d---~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma---------------naed~~rL  483 (629)
T KOG2300|consen  422 D---LYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA---------------NAEDLNRL  483 (629)
T ss_pred             H---HHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc---------------chhhHHHH
Confidence            4   444333456664          11 5667888889999999999998754432               11112222


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCC
Q 009850          263 LESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  299 (524)
Q Consensus       263 ~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~  299 (524)
                      .+-.+..+|.+..-.|+..++....+.+.+.....+.
T Consensus       484 ~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~D  520 (629)
T KOG2300|consen  484 TACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPD  520 (629)
T ss_pred             HHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCC
Confidence            2345677899999999999999988888777655554

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.42  E-value=0.0058  Score=38.78  Aligned_cols=31  Identities=32%  Similarity=0.321  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 009850           82 ALKDMAIVMKQQNRAEEAIEAIKSLRSRCSD  112 (524)
Q Consensus        82 a~~~La~~~~~~g~~~eAi~~~~~al~~~p~  112 (524)
                      +++.+|.++...|++++|+..|++++...|+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            4555666666666666666666666665554

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=96.40  E-value=0.074  Score=54.62  Aligned_cols=107  Identities=10%  Similarity=-0.049  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-cHH--HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHH
Q 009850          177 RLLGNLGWALMQQNNYIEAEDAYRRALSIAPD-NNK--MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAY  253 (524)
Q Consensus       177 ~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~--~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~  253 (524)
                      .+++.....+.+.|-+..|.++.+-.+.++|. ++-  .+.+-....+.++++--+..++......             +
T Consensus       104 lal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~-------------~  170 (360)
T PF04910_consen  104 LALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKC-------------Y  170 (360)
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhh-------------h
Confidence            35666778888999999999999999999999 666  6667777788899988888777532210             1


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCH---------------HHHHHHHhhcccCCCCCCC
Q 009850          254 ERAQQMLKDLESEMMNKGGDRVEQSRL---------------FDAFLGSSSIWQPQPCKDH  299 (524)
Q Consensus       254 ~~al~~~p~~~~a~~~lg~~~~~~g~~---------------~eAi~~~~~al~~~P~~~~  299 (524)
                      ..-+...|+   .-+..+.++...++.               ++|.....+|+..-|....
T Consensus       171 ~~~~~~lPn---~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl~  228 (360)
T PF04910_consen  171 RNWLSLLPN---FAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVLV  228 (360)
T ss_pred             hhhhhhCcc---HHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHHHH
Confidence            111233444   447777777778777               7888888888877665444

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.36  E-value=0.0068  Score=38.43  Aligned_cols=33  Identities=24%  Similarity=0.344  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 009850          177 RLLGNLGWALMQQNNYIEAEDAYRRALSIAPDN  209 (524)
Q Consensus       177 ~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~  209 (524)
                      ++++.+|.++...|++++|+..|++++...|++
T Consensus         1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            367889999999999999999999999988874

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.35  E-value=0.0062  Score=39.95  Aligned_cols=28  Identities=39%  Similarity=0.572  Sum_probs=22.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 009850          178 LLGNLGWALMQQNNYIEAEDAYRRALSI  205 (524)
Q Consensus       178 a~~~Lg~~~~~~g~~~eAi~~~~~Al~l  205 (524)
                      +|.+||.+|...|+|++|+.+|++++.+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4778999999999999999999996644

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=96.32  E-value=0.87  Score=46.24  Aligned_cols=220  Identities=15%  Similarity=0.009  Sum_probs=129.5

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHcC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH------------
Q 009850           47 TPYVRAKNVQLVDKDPEKAIPLFWAAINAG--------DRVDSALKDMAIVMKQQNRAEEAIEAIKSL------------  106 (524)
Q Consensus        47 ~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~--------p~~~~a~~~La~~~~~~g~~~eAi~~~~~a------------  106 (524)
                      +..+..+...+..|+++++..+..++...-        +......+..-.-+..+.+.+++..+....            
T Consensus        30 ~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~lq~L~Elee~~~~~~~~~~~~~~~~~l~~  109 (352)
T PF02259_consen   30 EYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVKLQQLVELEEIIELKSNLSQNPQDLKSLLK  109 (352)
T ss_pred             hHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHhhcccHHHHHHHHH
Confidence            456667777779999999999988887641        122222222222222333444444443111            


Q ss_pred             -----HHhCCCc----------------------HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHH
Q 009850          107 -----RSRCSDQ----------------------AQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKT  159 (524)
Q Consensus       107 -----l~~~p~~----------------------~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~  159 (524)
                           +....++                      .....+..++.+..+.|+++-|...+.++......           
T Consensus       110 ~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~-----------  178 (352)
T PF02259_consen  110 RWRSRLPNMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPS-----------  178 (352)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCc-----------
Confidence                 0000111                      01134445556666777777777766666544100           


Q ss_pred             HHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-c--------------------------HH-
Q 009850          160 ARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPD-N--------------------------NK-  211 (524)
Q Consensus       160 a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~--------------------------~~-  211 (524)
                                 .....+.+.+..+.++...|+..+|+..++..+..... .                          .. 
T Consensus       179 -----------~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (352)
T PF02259_consen  179 -----------SESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKES  247 (352)
T ss_pred             -----------ccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhh
Confidence                       01124667788888899999999999998888872111 1                          01 


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-----------
Q 009850          212 MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRL-----------  280 (524)
Q Consensus       212 ~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~-----------  280 (524)
                      .-..+.++...|+|-...       ... ......+.+++.|.++....|....+|+.+|..+...-..           
T Consensus       248 ~~~~a~~~l~~a~w~~~~-------~~~-~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~  319 (352)
T PF02259_consen  248 KELKAKAFLLLAKWLDEL-------YSK-LSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQE  319 (352)
T ss_pred             HHHHHHHHHHHHHHHHhh-------ccc-cccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchh
Confidence            234556666666655554       011 2345667889999999999999999999998765443221           


Q ss_pred             ------HHHHHHHhhcccCCCC
Q 009850          281 ------FDAFLGSSSIWQPQPC  296 (524)
Q Consensus       281 ------~eAi~~~~~al~~~P~  296 (524)
                            ..|+.+|-+++...+.
T Consensus       320 ~~~~~~~~ai~~y~~al~~~~~  341 (352)
T PF02259_consen  320 DRSEYLEQAIEGYLKALSLGSK  341 (352)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCC
Confidence                  3466777777777666

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=96.17  E-value=2.2  Score=45.12  Aligned_cols=72  Identities=10%  Similarity=-0.037  Sum_probs=61.5

Q ss_pred             HHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 009850           37 HAIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSR  109 (524)
Q Consensus        37 ~~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~  109 (524)
                      ..+...|.+.++|+.|-.-+..+ -+++....|++.+...|..+.+|..........++|+.-..+|.+++..
T Consensus        11 ~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk   82 (656)
T KOG1914|consen   11 ERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK   82 (656)
T ss_pred             HHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            45677889999999888776655 8999999999999999999999999888888888999988888887653

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.13  E-value=0.24  Score=47.45  Aligned_cols=179  Identities=12%  Similarity=0.067  Sum_probs=131.4

Q ss_pred             HHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChH-
Q 009850           56 QLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQN-RAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLD-  133 (524)
Q Consensus        56 ~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g-~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~-  133 (524)
                      +.+...-..|+.+-..+|.++|.+...|...-.++..++ +..+-++++...+.-+|.+-  .+|...-.+....|++. 
T Consensus        53 ~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNY--QvWHHRr~ive~l~d~s~  130 (318)
T KOG0530|consen   53 IAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNY--QVWHHRRVIVELLGDPSF  130 (318)
T ss_pred             HhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccch--hHHHHHHHHHHHhcCccc
Confidence            345566788999999999999999999888888877765 67788899999999999885  56665555666677776 


Q ss_pred             HHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-H
Q 009850          134 DQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-M  212 (524)
Q Consensus       134 eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~  212 (524)
                      .-+++.+.++..                          +..+-.+|...-++...-+.|+.-+.+..+.++.+--+.. |
T Consensus       131 rELef~~~~l~~--------------------------DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAW  184 (318)
T KOG0530|consen  131 RELEFTKLMLDD--------------------------DAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAW  184 (318)
T ss_pred             chHHHHHHHHhc--------------------------cccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchh
Confidence            667777777776                          6777889999999999999999999999999988765554 5


Q ss_pred             HHHHHHHHH-cCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cC
Q 009850          213 CNLGICLMK-QGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVE-QS  278 (524)
Q Consensus       213 ~~Lg~~~~~-~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~g  278 (524)
                      ..+-.+... .|=.+++.-                +.-+....+.+...|++..+|..|..++.. .|
T Consensus       185 N~Ryfvi~~~~~~~~~~~l----------------e~El~yt~~~I~~vP~NeSaWnYL~G~l~~d~g  236 (318)
T KOG0530|consen  185 NQRYFVITNTKGVISKAEL----------------ERELNYTKDKILLVPNNESAWNYLKGLLELDSG  236 (318)
T ss_pred             heeeEEEEeccCCccHHHH----------------HHHHHHHHHHHHhCCCCccHHHHHHHHHHhccC
Confidence            543333222 222221211                122344558899999999999998877765 44

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.04  E-value=0.013  Score=38.43  Aligned_cols=26  Identities=27%  Similarity=0.358  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 009850           83 LKDMAIVMKQQNRAEEAIEAIKSLRS  108 (524)
Q Consensus        83 ~~~La~~~~~~g~~~eAi~~~~~al~  108 (524)
                      |.+||.+|..+|+|++|+.+|++++.
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~   27 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQALA   27 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            55666666666666666666666443

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=96.01  E-value=0.57  Score=47.43  Aligned_cols=143  Identities=11%  Similarity=0.023  Sum_probs=104.4

Q ss_pred             HHHHHHHHcCCCcHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHH
Q 009850           67 PLFWAAINAGDRVDSALKDMAIVMKQQNR------------AEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDD  134 (524)
Q Consensus        67 ~~~~~al~~~p~~~~a~~~La~~~~~~g~------------~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~e  134 (524)
                      ..|.+.++.+|++.++|..+....-..-.            .+.-+.+|++|++.+|++.  .+...+.....+....++
T Consensus         6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~--~L~l~~l~~~~~~~~~~~   83 (321)
T PF08424_consen    6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSE--RLLLGYLEEGEKVWDSEK   83 (321)
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHhCCHHH
Confidence            45788889999999999998866555432            4677899999999999886  566666667777788888


Q ss_pred             HHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhhCC----
Q 009850          135 QIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQ---QNNYIEAEDAYRRALSIAP----  207 (524)
Q Consensus       135 A~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~---~g~~~eAi~~~~~Al~l~P----  207 (524)
                      ..+-+++++..                          +|++...|..+-.....   .-.+......|.+++..-.    
T Consensus        84 l~~~we~~l~~--------------------------~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~  137 (321)
T PF08424_consen   84 LAKKWEELLFK--------------------------NPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRS  137 (321)
T ss_pred             HHHHHHHHHHH--------------------------CCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhc
Confidence            88899999888                          78888777665444333   2357777777777765311    


Q ss_pred             C---------c-----HH-HHHHHHHHHHcCCHHHHHHHHHHhcc
Q 009850          208 D---------N-----NK-MCNLGICLMKQGRIGEAKETLRRVKP  237 (524)
Q Consensus       208 ~---------~-----~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~  237 (524)
                      .         .     .. +..+...+...|-.+.|+..++..++
T Consensus       138 ~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE  182 (321)
T PF08424_consen  138 GRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLE  182 (321)
T ss_pred             cccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHH
Confidence            0         0     11 34566667888999999999996543

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=95.95  E-value=0.3  Score=49.67  Aligned_cols=140  Identities=13%  Similarity=0.091  Sum_probs=103.1

Q ss_pred             CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCc-----
Q 009850           44 VGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGD----RVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRC-SDQ-----  113 (524)
Q Consensus        44 ~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p----~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~-p~~-----  113 (524)
                      .....|...+.+....|+++.|...+.++...++    ..+...+..+.++...|+..+|+..++..+... ...     
T Consensus       144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~  223 (352)
T PF02259_consen  144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS  223 (352)
T ss_pred             HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence            3445689999999999999999999999988652    256778888999999999999999999888721 100     


Q ss_pred             --------------------------HHHHHHHHHHHHHHHc------CChHHHHHHHHHHHHHhhccHhhhcccHHHHH
Q 009850          114 --------------------------AQESLDNILLDLYKRC------GRLDDQIALLKHKLYLIQQGLAFNGKRTKTAR  161 (524)
Q Consensus       114 --------------------------~~~~l~~~lg~~~~~~------g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~  161 (524)
                                                ....++..+|......      +..++++..|+.++++                
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~----------------  287 (352)
T PF02259_consen  224 NAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKL----------------  287 (352)
T ss_pred             HHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHh----------------
Confidence                                      1134455556555556      7777788888888877                


Q ss_pred             HHhHHHHHhcCCCcHHHHHHHHHHHHHcCC-----------------HHHHHHHHHHHHhhCCCc
Q 009850          162 SQGKKFQVSVEQEATRLLGNLGWALMQQNN-----------------YIEAEDAYRRALSIAPDN  209 (524)
Q Consensus       162 ~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~-----------------~~eAi~~~~~Al~l~P~~  209 (524)
                                +|....+|+.+|..+...=+                 ...|+..|-+++...++.
T Consensus       288 ----------~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~~  342 (352)
T PF02259_consen  288 ----------DPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSKY  342 (352)
T ss_pred             ----------ChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCCc
Confidence                      77777788888877654311                 134777888888877763

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=95.92  E-value=0.5  Score=51.64  Aligned_cols=143  Identities=16%  Similarity=0.121  Sum_probs=103.3

Q ss_pred             ChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHcC--
Q 009850           61 DPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQ-----NRAEEAIEAIKSLRSR---CSDQAQESLDNILLDLYKRCG--  130 (524)
Q Consensus        61 ~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~-----g~~~eAi~~~~~al~~---~p~~~~~~l~~~lg~~~~~~g--  130 (524)
                      +...|..+|+.+...  .+..+...+|.+|..-     .+.+.|+.+|+.+...   .-...+....+.+|.+|.+..  
T Consensus       227 ~~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~  304 (552)
T KOG1550|consen  227 ELSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGV  304 (552)
T ss_pred             hhhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCC
Confidence            356788888887654  5678888889888765     4899999999998772   000001134466788877643  


Q ss_pred             ---ChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHh
Q 009850          131 ---RLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQN---NYIEAEDAYRRALS  204 (524)
Q Consensus       131 ---~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g---~~~eAi~~~~~Al~  204 (524)
                         ++..|..+|.++-..                            +++.+.+.+|.++....   ++..|..+|..|..
T Consensus       305 ~~~d~~~A~~~~~~aA~~----------------------------g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~  356 (552)
T KOG1550|consen  305 EKIDYEKALKLYTKAAEL----------------------------GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAK  356 (552)
T ss_pred             ccccHHHHHHHHHHHHhc----------------------------CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHH
Confidence               677799999888766                            67779999999998766   57899999999987


Q ss_pred             hCCCcHH-HHHHHHHHHHc----CCHHHHHHHHHHh
Q 009850          205 IAPDNNK-MCNLGICLMKQ----GRIGEAKETLRRV  235 (524)
Q Consensus       205 l~P~~~~-~~~Lg~~~~~~----G~~~eA~~~~~~a  235 (524)
                      .  .+.. .+.+|.||..-    -+...|..+|.++
T Consensus       357 ~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~a  390 (552)
T KOG1550|consen  357 A--GHILAIYRLALCYELGLGVERNLELAFAYYKKA  390 (552)
T ss_pred             c--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHH
Confidence            3  2334 77788887543    3677777777754

>PRK10941 hypothetical protein; Provisional

Probab=95.86  E-value=0.1  Score=51.18  Aligned_cols=67  Identities=13%  Similarity=0.162  Sum_probs=62.6

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q 009850           49 YVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQ  115 (524)
Q Consensus        49 ~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~  115 (524)
                      ..++-.++.+.++++.|+.+.+..+...|+++.-+...|.+|.++|.+..|...++..++.+|+++.
T Consensus       184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~  250 (269)
T PRK10941        184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPI  250 (269)
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchh
Confidence            4467778899999999999999999999999999999999999999999999999999999999874

>smart00028 TPR Tetratricopeptide repeats

Probab=95.85  E-value=0.013  Score=35.81  Aligned_cols=33  Identities=39%  Similarity=0.597  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 009850          177 RLLGNLGWALMQQNNYIEAEDAYRRALSIAPDN  209 (524)
Q Consensus       177 ~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~  209 (524)
                      .+++.+|.++...|++++|+.+|+++++++|.+
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~   34 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN   34 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence            467899999999999999999999999888753

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=95.82  E-value=0.029  Score=59.03  Aligned_cols=108  Identities=13%  Similarity=0.024  Sum_probs=91.9

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHcCCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcC
Q 009850           52 AKNVQLVDKDPEKAIPLFWAAINAGDRVD-SALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCG  130 (524)
Q Consensus        52 lg~~~~~~g~~~~Ai~~~~~al~~~p~~~-~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g  130 (524)
                      .|..+...|+...|+.++..|+...|... ..+.+||.++..-|-..+|-..+.+++.+....+  ..++.+|.+|..+.
T Consensus       613 aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sep--l~~~~~g~~~l~l~  690 (886)
T KOG4507|consen  613 AGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEP--LTFLSLGNAYLALK  690 (886)
T ss_pred             ccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCc--hHHHhcchhHHHHh
Confidence            35556678999999999999999988643 3478999999999999999999999999997666  66788999999999


Q ss_pred             ChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHH
Q 009850          131 RLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALM  187 (524)
Q Consensus       131 ~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~  187 (524)
                      +.+.|++.|++++.+                          +|+++.+-..|-.+-+
T Consensus       691 ~i~~a~~~~~~a~~~--------------------------~~~~~~~~~~l~~i~c  721 (886)
T KOG4507|consen  691 NISGALEAFRQALKL--------------------------TTKCPECENSLKLIRC  721 (886)
T ss_pred             hhHHHHHHHHHHHhc--------------------------CCCChhhHHHHHHHHH
Confidence            999999999999998                          7888777766655544

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=95.78  E-value=0.3  Score=41.06  Aligned_cols=100  Identities=18%  Similarity=0.166  Sum_probs=73.5

Q ss_pred             HHHHHHH--HHHHcCCHHHHHHHHHHHHhhCCCcH----------H---HHHHHHHHHHcCCHHHHHHHHHHhcccccCC
Q 009850          178 LLGNLGW--ALMQQNNYIEAEDAYRRALSIAPDNN----------K---MCNLGICLMKQGRIGEAKETLRRVKPAVADG  242 (524)
Q Consensus       178 a~~~Lg~--~~~~~g~~~eAi~~~~~Al~l~P~~~----------~---~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~  242 (524)
                      +|..|+.  -....|-|++|...+++|+.....-|          +   +..|+.++..+|+|++++..-+.        
T Consensus         9 aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~--------   80 (144)
T PF12968_consen    9 AYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADR--------   80 (144)
T ss_dssp             HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHH--------
Confidence            4555544  45567899999999999998753321          1   45688899999999999888774        


Q ss_pred             CcCHHHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHcCCHHHHHHHHhhcc
Q 009850          243 PRGVDSHLKAYERAQQMLKDLESE----MMNKGGDRVEQSRLFDAFLGSSSIW  291 (524)
Q Consensus       243 ~~~~~~A~~~~~~al~~~p~~~~a----~~~lg~~~~~~g~~~eAi~~~~~al  291 (524)
                            ++.+|++--+++.+....    .++.+..+...|+.++|+..|+.+-
T Consensus        81 ------aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~ag  127 (144)
T PF12968_consen   81 ------ALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAG  127 (144)
T ss_dssp             ------HHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             ------HHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence                  677888888888876654    4678999999999999999998764

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=95.74  E-value=0.34  Score=52.22  Aligned_cols=135  Identities=14%  Similarity=0.041  Sum_probs=81.0

Q ss_pred             HHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCC
Q 009850           53 KNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMA-IVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGR  131 (524)
Q Consensus        53 g~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La-~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~  131 (524)
                      +.+-.--|+|++|...|-.+=+         ..|| .++..+|+|-.-.++++..-.-..+.....++..+|..+.....
T Consensus       741 aei~~~~g~feeaek~yld~dr---------rDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~  811 (1189)
T KOG2041|consen  741 AEISAFYGEFEEAEKLYLDADR---------RDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMME  811 (1189)
T ss_pred             HhHhhhhcchhHhhhhhhccch---------hhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHH
Confidence            3344445777777777754421         1222 35566777777777766544334444556788889999999999


Q ss_pred             hHHHHHHHHHHHHHhhccHhhhc-ccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 009850          132 LDDQIALLKHKLYLIQQGLAFNG-KRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRR  201 (524)
Q Consensus       132 ~~eA~~~~~~al~l~~~~~~~~~-~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~  201 (524)
                      |++|.++|...-......-++.. ..+...+.+.+.     -|++...+-.+|..+...|.-++|++.|-+
T Consensus       812 We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~-----Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr  877 (1189)
T KOG2041|consen  812 WEEAAKYYSYCGDTENQIECLYRLELFGELEVLART-----LPEDSELLPVMADMFTSVGMCDQAVEAYLR  877 (1189)
T ss_pred             HHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHh-----cCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence            99999999876544222222222 222222222222     366666777777777777777777766643

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=95.73  E-value=0.47  Score=48.80  Aligned_cols=153  Identities=16%  Similarity=0.035  Sum_probs=106.6

Q ss_pred             HHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHc--------------C------------CCcH---HHHHHHH
Q 009850           37 HAIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINA--------------G------------DRVD---SALKDMA   87 (524)
Q Consensus        37 ~~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~--------------~------------p~~~---~a~~~La   87 (524)
                      ..++..|...+++..++.++..+|++..|.+++++||-.              +            ++|-   .+++...
T Consensus        31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i  110 (360)
T PF04910_consen   31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYI  110 (360)
T ss_pred             HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHH
Confidence            345778889999999999999999999999988888642              1            1122   2345566


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHH
Q 009850           88 IVMKQQNRAEEAIEAIKSLRSRCSD-QAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKK  166 (524)
Q Consensus        88 ~~~~~~g~~~eAi~~~~~al~~~p~-~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~  166 (524)
                      ..+.+.|-+..|+++.+-++.++|. ++. .+...+-....+.++|+--+..++..........                
T Consensus       111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~-g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~----------------  173 (360)
T PF04910_consen  111 QSLGRRGCWRTALEWCKLLLSLDPDEDPL-GVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNW----------------  173 (360)
T ss_pred             HHHHhcCcHHHHHHHHHHHHhcCCCCCcc-hhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhh----------------
Confidence            7788889999999999999999997 663 2223333334567788777776665443100000                


Q ss_pred             HHHhcCCCcHHHHHHHHHHHHHcCCH---------------HHHHHHHHHHHhhCCCcHH
Q 009850          167 FQVSVEQEATRLLGNLGWALMQQNNY---------------IEAEDAYRRALSIAPDNNK  211 (524)
Q Consensus       167 ~~~~~~p~~~~a~~~Lg~~~~~~g~~---------------~eAi~~~~~Al~l~P~~~~  211 (524)
                        .   ..-+..-+..+.+++..++-               +.|...+.+|+...|.-..
T Consensus       174 --~---~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl~  228 (360)
T PF04910_consen  174 --L---SLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVLV  228 (360)
T ss_pred             --h---hhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHHHH
Confidence              0   00134667778888888888               8999999999998886544

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=95.63  E-value=2.6  Score=41.67  Aligned_cols=127  Identities=13%  Similarity=0.060  Sum_probs=84.0

Q ss_pred             HHHcCChHHHHHHHHHHHHcC----CCcH----HHHHHHHHHHHHcC-CHHHHHHHHHHHHHhC----C---C-----cH
Q 009850           56 QLVDKDPEKAIPLFWAAINAG----DRVD----SALKDMAIVMKQQN-RAEEAIEAIKSLRSRC----S---D-----QA  114 (524)
Q Consensus        56 ~~~~g~~~~Ai~~~~~al~~~----p~~~----~a~~~La~~~~~~g-~~~eAi~~~~~al~~~----p---~-----~~  114 (524)
                      ...+|+++.|..++.++-...    |+..    ..+++.|......+ ++++|..+++++.++-    +   .     .-
T Consensus         3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el   82 (278)
T PF08631_consen    3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL   82 (278)
T ss_pred             chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence            357899999999999987643    4332    34678888888899 9999999999998882    2   1     12


Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH
Q 009850          115 QESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIE  194 (524)
Q Consensus       115 ~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~e  194 (524)
                      +..+...++.+|...+.++...++.+ +++..                      ....|+.+..+...-.++.+.++.++
T Consensus        83 r~~iL~~La~~~l~~~~~~~~~ka~~-~l~~l----------------------~~e~~~~~~~~~L~l~il~~~~~~~~  139 (278)
T PF08631_consen   83 RLSILRLLANAYLEWDTYESVEKALN-ALRLL----------------------ESEYGNKPEVFLLKLEILLKSFDEEE  139 (278)
T ss_pred             HHHHHHHHHHHHHcCCChHHHHHHHH-HHHHH----------------------HHhCCCCcHHHHHHHHHHhccCChhH
Confidence            35667788888888887765444222 22220                      00135555555444444444677777


Q ss_pred             HHHHHHHHHhh
Q 009850          195 AEDAYRRALSI  205 (524)
Q Consensus       195 Ai~~~~~Al~l  205 (524)
                      +.+.+.+++.-
T Consensus       140 ~~~~L~~mi~~  150 (278)
T PF08631_consen  140 YEEILMRMIRS  150 (278)
T ss_pred             HHHHHHHHHHh
Confidence            77777777764

It is also involved in sporulation [].

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=95.61  E-value=0.75  Score=38.77  Aligned_cols=105  Identities=16%  Similarity=0.043  Sum_probs=67.4

Q ss_pred             HHHHHHHHH--HHHcCCHHHHHHHHHHHHHhCCCc----------HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhc
Q 009850           81 SALKDMAIV--MKQQNRAEEAIEAIKSLRSRCSDQ----------AQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQ  148 (524)
Q Consensus        81 ~a~~~La~~--~~~~g~~~eAi~~~~~al~~~p~~----------~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~  148 (524)
                      .+|..|+..  ...-|-|++|...+++++.....-          ....++..|+..+..+|+|++++..-.++|...+.
T Consensus         8 ~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNR   87 (144)
T PF12968_consen    8 MAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNR   87 (144)
T ss_dssp             HHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhh
Confidence            344544433  344577888888888887764311          11245556777788999999999888888876322


Q ss_pred             cHhhhcccHHHHHHHhHHHHHhcCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009850          149 GLAFNGKRTKTARSQGKKFQVSVEQEA----TRLLGNLGWALMQQNNYIEAEDAYRRALS  204 (524)
Q Consensus       149 ~~~~~~~~~~~a~~~~~~~~~~~~p~~----~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~  204 (524)
                      --.+                   +.+.    ..+.++.+..+...|+.++|+..|+.+.+
T Consensus        88 RGEL-------------------~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE  128 (144)
T PF12968_consen   88 RGEL-------------------HQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE  128 (144)
T ss_dssp             H--T-------------------TSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             cccc-------------------ccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence            1111                   2233    23557889999999999999999998865

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=95.45  E-value=0.25  Score=44.11  Aligned_cols=85  Identities=14%  Similarity=0.041  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 009850           47 TPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLY  126 (524)
Q Consensus        47 ~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~  126 (524)
                      .....+..+-...++.+++...+...-.+.|+.++.-..-|.++...|+|.+|+..++.+....|..+.  ..-.++.++
T Consensus        11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~--~kALlA~CL   88 (160)
T PF09613_consen   11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPY--AKALLALCL   88 (160)
T ss_pred             HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChH--HHHHHHHHH
Confidence            345667777788999999999999999999999999999999999999999999999999888888773  445567777


Q ss_pred             HHcCChH
Q 009850          127 KRCGRLD  133 (524)
Q Consensus       127 ~~~g~~~  133 (524)
                      ..+|+.+
T Consensus        89 ~~~~D~~   95 (160)
T PF09613_consen   89 YALGDPS   95 (160)
T ss_pred             HHcCChH
Confidence            7777753

>PRK10941 hypothetical protein; Provisional

Probab=95.45  E-value=0.17  Score=49.58  Aligned_cols=65  Identities=20%  Similarity=0.188  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccC
Q 009850          177 RLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVAD  241 (524)
Q Consensus       177 ~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~  241 (524)
                      ..+.++-.+|.+.++++.|+.+.+.++.+.|+++. +--+|.+|.++|.+..|...++..+...|+
T Consensus       182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~  247 (269)
T PRK10941        182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPE  247 (269)
T ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC
Confidence            56788889999999999999999999999999999 999999999999999999999954444433

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=95.38  E-value=4.8  Score=43.17  Aligned_cols=247  Identities=11%  Similarity=0.055  Sum_probs=169.8

Q ss_pred             HhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHhCCCcHH-H
Q 009850           39 IHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDM-AIVMKQQNRAEEAIEAIKSLRSRCSDQAQ-E  116 (524)
Q Consensus        39 ~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~L-a~~~~~~g~~~eAi~~~~~al~~~p~~~~-~  116 (524)
                      +...|.+-.-|-.-|..-.+.|..+.++..|++++..-|...+.|..+ +.+....|+.+.-...|++|......+.. .
T Consensus        72 L~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~  151 (577)
T KOG1258|consen   72 LSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSD  151 (577)
T ss_pred             HhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhcc
Confidence            356788888889999999999999999999999999999888887754 44444567777778888888887764421 2


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHh-----------------------hhcc------------------
Q 009850          117 SLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLA-----------------------FNGK------------------  155 (524)
Q Consensus       117 ~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~-----------------------~~~~------------------  155 (524)
                      .+|-.+......++++..-...|++.++.....+.                       +.+.                  
T Consensus       152 ~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e  231 (577)
T KOG1258|consen  152 PLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLE  231 (577)
T ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhH
Confidence            34455455556677777777777777654300000                       0000                  


Q ss_pred             --------------cHHHHHHHhHH---------------------HHHh----------cCCCcHHHHHHHHHHHHHcC
Q 009850          156 --------------RTKTARSQGKK---------------------FQVS----------VEQEATRLLGNLGWALMQQN  190 (524)
Q Consensus       156 --------------~~~~a~~~~~~---------------------~~~~----------~~p~~~~a~~~Lg~~~~~~g  190 (524)
                                    ..+........                     ++..          +++.....|......-...|
T Consensus       232 ~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g  311 (577)
T KOG1258|consen  232 ELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLG  311 (577)
T ss_pred             HHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcc
Confidence                          00000000000                     0000          02233467777777778889


Q ss_pred             CHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCC--------------CcCHHHHHHHHHH
Q 009850          191 NYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADG--------------PRGVDSHLKAYER  255 (524)
Q Consensus       191 ~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~--------------~~~~~~A~~~~~~  255 (524)
                      +++...-.|++++---..+.. |...+.-....|+..-|-..+..+...+...              .++.+.|...+++
T Consensus       312 ~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~  391 (577)
T KOG1258|consen  312 DFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQR  391 (577)
T ss_pred             cHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHH
Confidence            999999999988877767777 8888888888888888888777764433222              1678888899999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 009850          256 AQQMLKDLESEMMNKGGDRVEQSRLFDAFL  285 (524)
Q Consensus       256 al~~~p~~~~a~~~lg~~~~~~g~~~eAi~  285 (524)
                      .....|+...+-.........+|..+.+..
T Consensus       392 i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~  421 (577)
T KOG1258|consen  392 IESEYPGLVEVVLRKINWERRKGNLEDANY  421 (577)
T ss_pred             HHhhCCchhhhHHHHHhHHHHhcchhhhhH
Confidence            888889888887777778888888888873

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.32  E-value=2.5  Score=47.86  Aligned_cols=228  Identities=12%  Similarity=0.109  Sum_probs=123.0

Q ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 009850           46 DTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDS--ALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILL  123 (524)
Q Consensus        46 ~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~--a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg  123 (524)
                      ++....--..++..+-+.+-++++++.+-.+.-..+  .+.+|-.+-.-..+...-.+++++.-..+-++        .+
T Consensus       984 Pe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~--------ia 1055 (1666)
T KOG0985|consen  984 PEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPD--------IA 1055 (1666)
T ss_pred             hHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchh--------HH
Confidence            333333444555666666777777776543221111  11112111122234445555555543332222        13


Q ss_pred             HHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009850          124 DLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRAL  203 (524)
Q Consensus       124 ~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al  203 (524)
                      .+....+-|++|...|++-- .+..+.   .-..+......++.+....-+.+.+|..+|.+..+.|...+|++.|-+| 
T Consensus      1056 ~iai~~~LyEEAF~ifkkf~-~n~~A~---~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika- 1130 (1666)
T KOG0985|consen 1056 EIAIENQLYEEAFAIFKKFD-MNVSAI---QVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA- 1130 (1666)
T ss_pred             HHHhhhhHHHHHHHHHHHhc-ccHHHH---HHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc-
Confidence            33345566777777666421 100000   0011122222233333323456789999999999999999999998765 


Q ss_pred             hhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcC------------HHHH----------------HHHHH
Q 009850          204 SIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRG------------VDSH----------------LKAYE  254 (524)
Q Consensus       204 ~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~------------~~~A----------------~~~~~  254 (524)
                          +++. |...-.+..+.|.|++-+.++.-+.....+..-+            +.+.                -++|+
T Consensus      1131 ----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~ 1206 (1666)
T KOG0985|consen 1131 ----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFE 1206 (1666)
T ss_pred             ----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhh
Confidence                5566 8888888889999999999988875544433210            0000                01111


Q ss_pred             ----HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhc
Q 009850          255 ----RAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSI  290 (524)
Q Consensus       255 ----~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~a  290 (524)
                          ++.++.-....-|..|+..+..+|+|..|+..-++|
T Consensus      1207 ~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1207 EKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred             hhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence                112222223344667788888999999988876655

>smart00028 TPR Tetratricopeptide repeats

Probab=95.22  E-value=0.034  Score=33.84  Aligned_cols=30  Identities=17%  Similarity=0.130  Sum_probs=16.3

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcCC
Q 009850           48 PYVRAKNVQLVDKDPEKAIPLFWAAINAGD   77 (524)
Q Consensus        48 ~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p   77 (524)
                      .|+.+|.++...|++++|+..|+++++.+|
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~   32 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDP   32 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence            345555555555555555555555555544

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=95.12  E-value=0.14  Score=41.38  Aligned_cols=63  Identities=19%  Similarity=0.062  Sum_probs=45.7

Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH---HHHHHHHHHHcCCHHHHHHHHHH
Q 009850          172 EQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK---MCNLGICLMKQGRIGEAKETLRR  234 (524)
Q Consensus       172 ~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~---~~~Lg~~~~~~G~~~eA~~~~~~  234 (524)
                      +|++..+.+.+|..+...|++++|++.+-.+++.+++...   .-.+-.++..+|.-+.-...|++
T Consensus        18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RR   83 (90)
T PF14561_consen   18 NPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRR   83 (90)
T ss_dssp             STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHH
Confidence            8999999999999999999999999999999998877633   55666777777776555555553

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.11  E-value=1.9  Score=38.95  Aligned_cols=145  Identities=12%  Similarity=0.072  Sum_probs=90.8

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHcCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHH
Q 009850           49 YVRAKNVQLVDKDPEKAIPLFWAAINAGDRV--DSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQ--AQESLDNILLD  124 (524)
Q Consensus        49 ~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~--~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~--~~~~l~~~lg~  124 (524)
                      -|..+..+...+..++|+..|...-+-+-..  .-+.+..|.+..+.|+...|+.+|..+-.-.|..  ..-.....-+.
T Consensus        61 ~flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~  140 (221)
T COG4649          61 AFLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAY  140 (221)
T ss_pred             HHHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHH
Confidence            3455666677778888888887766554332  2345667888888888888888888876655422  11122233344


Q ss_pred             HHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009850          125 LYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALS  204 (524)
Q Consensus       125 ~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~  204 (524)
                      ++...|-|++-....+..-                         ...+|--..+.-.||..-++.|++.+|...|.+...
T Consensus       141 lLvD~gsy~dV~srvepLa-------------------------~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         141 LLVDNGSYDDVSSRVEPLA-------------------------GDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             HHhccccHHHHHHHhhhcc-------------------------CCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence            5566777777554443211                         111344456777889889999999999999998877


Q ss_pred             hCCCcHH-HHHHHHHH
Q 009850          205 IAPDNNK-MCNLGICL  219 (524)
Q Consensus       205 l~P~~~~-~~~Lg~~~  219 (524)
                       +...+. ..+.+.+.
T Consensus       196 -Da~aprnirqRAq~m  210 (221)
T COG4649         196 -DAQAPRNIRQRAQIM  210 (221)
T ss_pred             -cccCcHHHHHHHHHH
Confidence             333333 44444443

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=95.00  E-value=0.13  Score=36.92  Aligned_cols=35  Identities=23%  Similarity=0.089  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q 009850           81 SALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQ  115 (524)
Q Consensus        81 ~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~  115 (524)
                      +.++.+|..++++|+|++|..+.+.+++..|++.+
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q   36 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQ   36 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence            45677788888888888888888888888887753

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=95.00  E-value=6.5  Score=44.16  Aligned_cols=188  Identities=13%  Similarity=0.028  Sum_probs=114.7

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcCCC---------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---H
Q 009850           48 PYVRAKNVQLVDKDPEKAIPLFWAAINAGDR---------VDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQA---Q  115 (524)
Q Consensus        48 ~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~---------~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~---~  115 (524)
                      .....+-......++.+|..+..++-..-+.         ..+..-..|.+....|+.++|+++.+.++..-|.+.   .
T Consensus       417 Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r  496 (894)
T COG2909         417 LVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSR  496 (894)
T ss_pred             HHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhh
Confidence            3444556677788999999988887764332         123334567888889999999999999998888542   2


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhcc--Hh-------------hhcc---cHHHHHHHhHHHH--HhcCCCc
Q 009850          116 ESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQG--LA-------------FNGK---RTKTARSQGKKFQ--VSVEQEA  175 (524)
Q Consensus       116 ~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~--~~-------------~~~~---~~~~a~~~~~~~~--~~~~p~~  175 (524)
                      ..+...+|.+..-.|++++|..+..++.++....  ..             ...+   +.+....+.....  ....|-+
T Consensus       497 ~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~  576 (894)
T COG2909         497 IVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRH  576 (894)
T ss_pred             hhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccc
Confidence            3566678888888999999999888887763111  00             0011   0111111111000  1113333


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----CCcHH----HHHHHHHHHHcCCHHHHHHHHHHh
Q 009850          176 TRLLGNLGWALMQQNNYIEAEDAYRRALSIA----PDNNK----MCNLGICLMKQGRIGEAKETLRRV  235 (524)
Q Consensus       176 ~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~----P~~~~----~~~Lg~~~~~~G~~~eA~~~~~~a  235 (524)
                      .-.....+.++...-+++.+.......+++.    |....    ++.|+.++...|+.++|...+...
T Consensus       577 ~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~  644 (894)
T COG2909         577 EFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDEL  644 (894)
T ss_pred             hhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            2222333333332223666666666665543    33322    458999999999999999999875

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=94.94  E-value=0.22  Score=41.45  Aligned_cols=104  Identities=13%  Similarity=0.147  Sum_probs=64.1

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHcCCCcHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Q 009850           52 AKNVQLVDKDPEKAIPLFWAAINAGDRVDSAL---KDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKR  128 (524)
Q Consensus        52 lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~---~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~  128 (524)
                      ++..++..|++-+|+++.+..+...+++..+|   ..-|.++..            .+...+..+.  ...+.+      
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~------------lA~~ten~d~--k~~yLl------   61 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYK------------LAKKTENPDV--KFRYLL------   61 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHH------------HHHhccCchH--HHHHHH------
Confidence            34566677777777777777776666555332   222333322            2222222221  222333      


Q ss_pred             cCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 009850          129 CGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIA  206 (524)
Q Consensus       129 ~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~  206 (524)
                           .++++|.++..+                          .|..+..++.+|.-+-....|++++.-.+++|.+.
T Consensus        62 -----~sve~~s~a~~L--------------------------sp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~  108 (111)
T PF04781_consen   62 -----GSVECFSRAVEL--------------------------SPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSVT  108 (111)
T ss_pred             -----HhHHHHHHHhcc--------------------------ChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence                 356677777777                          78888888888888777778888888888888753

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=94.94  E-value=4.1  Score=43.20  Aligned_cols=175  Identities=10%  Similarity=-0.012  Sum_probs=112.8

Q ss_pred             HHhcCCCChHHHHHHHHHHHHcCC--------------hHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHcC---CHHHH
Q 009850           38 AIHKVPVGDTPYVRAKNVQLVDKD--------------PEKAIPLFWAAINAGD-RVDSALKDMAIVMKQQN---RAEEA   99 (524)
Q Consensus        38 ~~~~~p~~~~~~~~lg~~~~~~g~--------------~~~Ai~~~~~al~~~p-~~~~a~~~La~~~~~~g---~~~eA   99 (524)
                      .+..++.+++.|+.....+...++              -+++..+|+.++..-. .+...++.++.--...-   +++.-
T Consensus       271 ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~  350 (656)
T KOG1914|consen  271 CLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKV  350 (656)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhh
Confidence            556678888889887777776666              7788888888876432 23333444443222222   35666


Q ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHH
Q 009850          100 IEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLL  179 (524)
Q Consensus       100 i~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~  179 (524)
                      ..++++++.+...++. .++..+...-.+..-...|...|.++-+..                        ..+.+.-+.
T Consensus       351 ~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~------------------------r~~hhVfVa  405 (656)
T KOG1914|consen  351 HEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDK------------------------RTRHHVFVA  405 (656)
T ss_pred             HHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhcc------------------------CCcchhhHH
Confidence            7777777776543321 223333333445555677777777765430                        012222222


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhccc
Q 009850          180 GNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPA  238 (524)
Q Consensus       180 ~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~  238 (524)
                      ..+-. |.-+++.+-|...|+-.+...++.+. -......+..+|+-..|...|+++++.
T Consensus       406 ~A~mE-y~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s  464 (656)
T KOG1914|consen  406 AALME-YYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS  464 (656)
T ss_pred             HHHHH-HHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence            22222 44579999999999999999999999 445667778899999999999998766

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=94.90  E-value=0.44  Score=42.55  Aligned_cols=121  Identities=17%  Similarity=0.066  Sum_probs=85.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHH
Q 009850           80 DSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKT  159 (524)
Q Consensus        80 ~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~  159 (524)
                      ...+..+..+-...++.+++...+..+-.+.|..+  .+...-|.++...|+|.+|+..|+.+...              
T Consensus        10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~--e~~~~~~~l~i~r~~w~dA~rlLr~l~~~--------------   73 (160)
T PF09613_consen   10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFP--ELDLFDGWLHIVRGDWDDALRLLRELEER--------------   73 (160)
T ss_pred             HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCch--HHHHHHHHHHHHhCCHHHHHHHHHHHhcc--------------
Confidence            34566777777888999999999999999999987  55566788899999999999999998766              


Q ss_pred             HHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHcCCHHHHHH
Q 009850          160 ARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKE  230 (524)
Q Consensus       160 a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~~~~Lg~~~~~~G~~~eA~~  230 (524)
                                  .|..+.+--.++.|+..+|+.+= ..+-.++++..+ ++.-..+...+....+...|..
T Consensus        74 ------------~~~~p~~kALlA~CL~~~~D~~W-r~~A~evle~~~-d~~a~~Lv~~Ll~~~~~~~a~~  130 (160)
T PF09613_consen   74 ------------APGFPYAKALLALCLYALGDPSW-RRYADEVLESGA-DPDARALVRALLARADLEPAHE  130 (160)
T ss_pred             ------------CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHhcCC-ChHHHHHHHHHHHhccccchhh
Confidence                        67888888899999988887531 112233444333 3333334444444444444444

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=94.88  E-value=0.5  Score=43.37  Aligned_cols=103  Identities=21%  Similarity=0.208  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHH
Q 009850           80 DSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQ-ESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTK  158 (524)
Q Consensus        80 ~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~-~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~  158 (524)
                      ..++..+|..|.+.|++++|++.|.++........+ ..++..+..+....|++.....++.++-.+..           
T Consensus        36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~-----------  104 (177)
T PF10602_consen   36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIE-----------  104 (177)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh-----------
Confidence            356889999999999999999999998887655432 45666777778888999999998888876621           


Q ss_pred             HHHHHhHHHHHhcCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 009850          159 TARSQGKKFQVSVEQEAT----RLLGNLGWALMQQNNYIEAEDAYRRALSIA  206 (524)
Q Consensus       159 ~a~~~~~~~~~~~~p~~~----~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~  206 (524)
                                   .+++.    .....-|..++..++|.+|...|-.++.-.
T Consensus       105 -------------~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~  143 (177)
T PF10602_consen  105 -------------KGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF  143 (177)
T ss_pred             -------------ccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence                         12222    133344666777788888888887776544

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=94.86  E-value=0.59  Score=42.90  Aligned_cols=99  Identities=13%  Similarity=0.016  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH----HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHH
Q 009850          176 TRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK----MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLK  251 (524)
Q Consensus       176 ~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~----~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~  251 (524)
                      ..++..+|..|.+.|++++|+++|.++.........    +.++..+.+..|++.....++.++....            
T Consensus        36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~------------  103 (177)
T PF10602_consen   36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLI------------  103 (177)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH------------
Confidence            468899999999999999999999998886544333    6788888999999999999999763221            


Q ss_pred             HHHHHHHhCCCCHH----HHHHHHHHHHHcCCHHHHHHHHhhcccC
Q 009850          252 AYERAQQMLKDLES----EMMNKGGDRVEQSRLFDAFLGSSSIWQP  293 (524)
Q Consensus       252 ~~~~al~~~p~~~~----a~~~lg~~~~~~g~~~eAi~~~~~al~~  293 (524)
                             ....+..    ....-|..++..++|.+|-..|-.+..-
T Consensus       104 -------~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t  142 (177)
T PF10602_consen  104 -------EKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLST  142 (177)
T ss_pred             -------hccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcC
Confidence                   1111121    2344477888899999999988776543

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=94.85  E-value=0.8  Score=43.42  Aligned_cols=108  Identities=20%  Similarity=0.203  Sum_probs=72.7

Q ss_pred             cCCHHHHHHHHHHHHHhC-----CCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHH
Q 009850           93 QNRAEEAIEAIKSLRSRC-----SDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKF  167 (524)
Q Consensus        93 ~g~~~eAi~~~~~al~~~-----p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~  167 (524)
                      ...+++|++.|.-|+-..     +....+.++..++.+|...|+.+....++++|+........                
T Consensus        90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~----------------  153 (214)
T PF09986_consen   90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYE----------------  153 (214)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHH----------------
Confidence            346777777777654432     12223567788899999999988777778777776322221                


Q ss_pred             HHhcCC----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH--HHHHHHH
Q 009850          168 QVSVEQ----EATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNN--KMCNLGI  217 (524)
Q Consensus       168 ~~~~~p----~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~--~~~~Lg~  217 (524)
                       ....|    +...+.+.+|.+..+.|++++|..+|.+++.......  .+.++|.
T Consensus       154 -~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR  208 (214)
T PF09986_consen  154 -NEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMAR  208 (214)
T ss_pred             -hCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHH
Confidence             11122    2256889999999999999999999999998544333  2555544

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=94.85  E-value=0.091  Score=51.28  Aligned_cols=71  Identities=25%  Similarity=0.429  Sum_probs=62.8

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 009850          121 ILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYR  200 (524)
Q Consensus       121 ~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~  200 (524)
                      ..+.-..+.|+.++|..+|+.++.+                          .|.+++++..+|......++.-+|-.+|-
T Consensus       121 ~~A~~~~~~Gk~ekA~~lfeHAlal--------------------------aP~~p~~L~e~G~f~E~~~~iv~ADq~Y~  174 (472)
T KOG3824|consen  121 KAAGRSRKDGKLEKAMTLFEHALAL--------------------------APTNPQILIEMGQFREMHNEIVEADQCYV  174 (472)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHhc--------------------------CCCCHHHHHHHhHHHHhhhhhHhhhhhhh
Confidence            3344456789999999999999999                          99999999999999999999999999999


Q ss_pred             HHHhhCCCcHH-HHHHHH
Q 009850          201 RALSIAPDNNK-MCNLGI  217 (524)
Q Consensus       201 ~Al~l~P~~~~-~~~Lg~  217 (524)
                      +|+.++|.+.. +.|.+.
T Consensus       175 ~ALtisP~nseALvnR~R  192 (472)
T KOG3824|consen  175 KALTISPGNSEALVNRAR  192 (472)
T ss_pred             eeeeeCCCchHHHhhhhc
Confidence            99999999987 666554

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=94.82  E-value=5.5  Score=42.73  Aligned_cols=148  Identities=9%  Similarity=-0.070  Sum_probs=109.2

Q ss_pred             HHHcCChHHHHHHHHHHHHc-----CC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 009850           56 QLVDKDPEKAIPLFWAAINA-----GD---RVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYK  127 (524)
Q Consensus        56 ~~~~g~~~~Ai~~~~~al~~-----~p---~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~  127 (524)
                      +...-...+.+..|+..++.     .|   ..-..|......-...|+++...-.|++++--.....  ..|..++....
T Consensus       265 ~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~--efWiky~~~m~  342 (577)
T KOG1258|consen  265 YQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYD--EFWIKYARWME  342 (577)
T ss_pred             HHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhH--HHHHHHHHHHH
Confidence            34444555666666666653     23   3345566777777888999999999999887766655  56677777777


Q ss_pred             HcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 009850          128 RCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAP  207 (524)
Q Consensus       128 ~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P  207 (524)
                      ..|+.+-|-..+.++.++.                         .|..+.++..-+.+-...|++..|...|+...+--|
T Consensus       343 ~~~~~~~~~~~~~~~~~i~-------------------------~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~p  397 (577)
T KOG1258|consen  343 SSGDVSLANNVLARACKIH-------------------------VKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYP  397 (577)
T ss_pred             HcCchhHHHHHHHhhhhhc-------------------------CCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCC
Confidence            7899888888888887762                         466777888888888889999999999999998778


Q ss_pred             CcHH-HHHHHHHHHHcCCHHHHHH
Q 009850          208 DNNK-MCNLGICLMKQGRIGEAKE  230 (524)
Q Consensus       208 ~~~~-~~~Lg~~~~~~G~~~eA~~  230 (524)
                      .... -..-.....++|+.+.+..
T Consensus       398 g~v~~~l~~~~~e~r~~~~~~~~~  421 (577)
T KOG1258|consen  398 GLVEVVLRKINWERRKGNLEDANY  421 (577)
T ss_pred             chhhhHHHHHhHHHHhcchhhhhH
Confidence            7766 3444556667788887774

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=94.81  E-value=0.24  Score=46.97  Aligned_cols=88  Identities=15%  Similarity=0.142  Sum_probs=64.9

Q ss_pred             HcCChHHHHHHHHHHHHc----C-CC--cHHHHHHHHHHHHHcCCHH-------HHHHHHHHHHHhCCC--c--HHHHHH
Q 009850           58 VDKDPEKAIPLFWAAINA----G-DR--VDSALKDMAIVMKQQNRAE-------EAIEAIKSLRSRCSD--Q--AQESLD  119 (524)
Q Consensus        58 ~~g~~~~Ai~~~~~al~~----~-p~--~~~a~~~La~~~~~~g~~~-------eAi~~~~~al~~~p~--~--~~~~l~  119 (524)
                      ....+++|+..|.-|+-.    . +.  -+..+..+|++|..+|+.+       .|++.|.+++.....  .  ....+.
T Consensus        89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~  168 (214)
T PF09986_consen   89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL  168 (214)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence            455788888888877753    2 22  2456778899999999954       466666666655432  1  224688


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHH
Q 009850          120 NILLDLYKRCGRLDDQIALLKHKLYL  145 (524)
Q Consensus       120 ~~lg~~~~~~g~~~eA~~~~~~al~l  145 (524)
                      +.+|.++.+.|++++|..+|.+++..
T Consensus       169 YLigeL~rrlg~~~eA~~~fs~vi~~  194 (214)
T PF09986_consen  169 YLIGELNRRLGNYDEAKRWFSRVIGS  194 (214)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence            89999999999999999999999876

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=94.81  E-value=0.23  Score=41.36  Aligned_cols=44  Identities=14%  Similarity=0.019  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 009850           99 AIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLY  144 (524)
Q Consensus        99 Ai~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~  144 (524)
                      |++.|.++..+.|..+  ...+.+|.-+.....|+++..-.++++.
T Consensus        63 sve~~s~a~~Lsp~~A--~~L~~la~~l~s~~~Ykk~v~kak~~Ls  106 (111)
T PF04781_consen   63 SVECFSRAVELSPDSA--HSLFELASQLGSVKYYKKAVKKAKRGLS  106 (111)
T ss_pred             hHHHHHHHhccChhHH--HHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence            5677777777777764  4445555444334445555555555443

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=94.80  E-value=3.6  Score=40.61  Aligned_cols=159  Identities=15%  Similarity=0.095  Sum_probs=109.3

Q ss_pred             HHHcCCHHHHHHHHHHHHHhC----CCcH--HHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHhhccHhhhcccHHHHHH
Q 009850           90 MKQQNRAEEAIEAIKSLRSRC----SDQA--QESLDNILLDLYKRCG-RLDDQIALLKHKLYLIQQGLAFNGKRTKTARS  162 (524)
Q Consensus        90 ~~~~g~~~eAi~~~~~al~~~----p~~~--~~~l~~~lg~~~~~~g-~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~  162 (524)
                      ....|+++.|..++.++-...    |+..  .....+..|......+ ++++|..+++++.++........         
T Consensus         3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~---------   73 (278)
T PF08631_consen    3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMD---------   73 (278)
T ss_pred             chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhcc---------
Confidence            357899999999999976654    3322  1456677888888899 99999999999998832210000         


Q ss_pred             HhHHHHHhcCCCc----HHHHHHHHHHHHHcCCHH---HHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHH
Q 009850          163 QGKKFQVSVEQEA----TRLLGNLGWALMQQNNYI---EAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRR  234 (524)
Q Consensus       163 ~~~~~~~~~~p~~----~~a~~~Lg~~~~~~g~~~---eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~  234 (524)
                             ...|+.    ..++..++.+|...+.++   +|....+.+-.-.|+.+. +...-.++.+.++.+++.+.+.+
T Consensus        74 -------~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~  146 (278)
T PF08631_consen   74 -------KLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMR  146 (278)
T ss_pred             -------ccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHH
Confidence                   001222    357788999999888754   455566666666787777 43333344447999999999998


Q ss_pred             hcccccCCCcCHHHHHHHHHHHHHhCCCCH
Q 009850          235 VKPAVADGPRGVDSHLKAYERAQQMLKDLE  264 (524)
Q Consensus       235 a~~~~~~~~~~~~~A~~~~~~al~~~p~~~  264 (524)
                      ...........++.++..+.+..+..|..+
T Consensus       147 mi~~~~~~e~~~~~~l~~i~~l~~~~~~~a  176 (278)
T PF08631_consen  147 MIRSVDHSESNFDSILHHIKQLAEKSPELA  176 (278)
T ss_pred             HHHhcccccchHHHHHHHHHHHHhhCcHHH
Confidence            877665555677777777777777776543

It is also involved in sporulation [].

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=94.77  E-value=0.13  Score=53.12  Aligned_cols=129  Identities=16%  Similarity=0.138  Sum_probs=96.4

Q ss_pred             HHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHH
Q 009850           55 VQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDD  134 (524)
Q Consensus        55 ~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~e  134 (524)
                      .....|+...|-.-+..+++..|.++......+.++..+|.|+.|...+.-+-..-..-.  .....+......+|++++
T Consensus       298 k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~--~~~~~~~r~~~~l~r~~~  375 (831)
T PRK15180        298 KQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTD--STLRCRLRSLHGLARWRE  375 (831)
T ss_pred             HHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCc--hHHHHHHHhhhchhhHHH
Confidence            346789999999999999999999999999999999999999999988876544332211  233444555678899999


Q ss_pred             HHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q 009850          135 QIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK  211 (524)
Q Consensus       135 A~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~  211 (524)
                      |...-.-.+.-                          .-+++++..--+.....+|-+++|..++++.+.++|....
T Consensus       376 a~s~a~~~l~~--------------------------eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~  426 (831)
T PRK15180        376 ALSTAEMMLSN--------------------------EIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQS  426 (831)
T ss_pred             HHHHHHHHhcc--------------------------ccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcc
Confidence            98776655433                          3344555555555556778899999999999999887644

>KOG3783 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.63  E-value=2.6  Score=44.58  Aligned_cols=237  Identities=13%  Similarity=0.009  Sum_probs=135.8

Q ss_pred             HHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 009850           37 HAIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDR----VDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSD  112 (524)
Q Consensus        37 ~~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~----~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~  112 (524)
                      ...+..|.++...+..+..+...|+.+.|+..+...+.  +.    ..-.++.+|.++.-+.+|..|...+........-
T Consensus       258 ~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desdW  335 (546)
T KOG3783|consen  258 KYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESDW  335 (546)
T ss_pred             HHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhh
Confidence            34456778877788889999999998888888888776  22    2234667888999999999999999988777642


Q ss_pred             cHHHHHHHHHHHHHH--------HcCChHHHHHHHHHHHHHhh---ccHhhhcccHHHHHHHhHHHHHhcCCCcHHH--H
Q 009850          113 QAQESLDNILLDLYK--------RCGRLDDQIALLKHKLYLIQ---QGLAFNGKRTKTARSQGKKFQVSVEQEATRL--L  179 (524)
Q Consensus       113 ~~~~~l~~~lg~~~~--------~~g~~~eA~~~~~~al~l~~---~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a--~  179 (524)
                      + +....+..|.++.        ..|+-+.|-.+++....+..   .++.+.......+..+.....  .++..+.+  +
T Consensus       336 S-~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~--~~~~~~la~P~  412 (546)
T KOG3783|consen  336 S-HAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGP--LNASILLASPY  412 (546)
T ss_pred             h-HHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhcccc--ccccccccchH
Confidence            2 1122222333332        23455666555555544321   222222211122222211110  01111111  2


Q ss_pred             HHHHHHHHH--cCCHHHHHHHHHHHH---hh-CCCcHH--HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHH
Q 009850          180 GNLGWALMQ--QNNYIEAEDAYRRAL---SI-APDNNK--MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLK  251 (524)
Q Consensus       180 ~~Lg~~~~~--~g~~~eAi~~~~~Al---~l-~P~~~~--~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~  251 (524)
                      +.+..++..  .....+.. -++..+   .. ++++.-  +..+|.++..+|+-..|..+|..+....            
T Consensus       413 ~El~Y~Wngf~~~s~~~l~-k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e------------  479 (546)
T KOG3783|consen  413 YELAYFWNGFSRMSKNELE-KMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKE------------  479 (546)
T ss_pred             HHHHHHHhhcccCChhhHH-HHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH------------
Confidence            333333322  12223333 111111   12 233332  6779999999999999999999653221            


Q ss_pred             HHHHHHHhCC-CCHHHHHHHHHHHHHcCC-HHHHHHHHhhcccCC
Q 009850          252 AYERAQQMLK-DLESEMMNKGGDRVEQSR-LFDAFLGSSSIWQPQ  294 (524)
Q Consensus       252 ~~~~al~~~p-~~~~a~~~lg~~~~~~g~-~~eAi~~~~~al~~~  294 (524)
                         .....++ -.+.+++.+|..|..+|. ..++...+.+|-.-.
T Consensus       480 ---~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~  521 (546)
T KOG3783|consen  480 ---SKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYA  521 (546)
T ss_pred             ---HhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhc
Confidence               1111111 245789999999999998 899998888876544

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=94.56  E-value=6.4  Score=44.21  Aligned_cols=190  Identities=13%  Similarity=0.061  Sum_probs=117.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--c-----HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhh
Q 009850           81 SALKDMAIVMKQQNRAEEAIEAIKSLRSRCSD--Q-----AQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFN  153 (524)
Q Consensus        81 ~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~--~-----~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~  153 (524)
                      ......+.......++++|..++.++...-+.  .     .........+.+....|+++.|+...+.++...+.+.   
T Consensus       416 ~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~---  492 (894)
T COG2909         416 RLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAA---  492 (894)
T ss_pred             hHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccccc---
Confidence            33445677788889999999998887665543  1     1223334556667788999999999999887622111   


Q ss_pred             cccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH----H---HHHHHHHHHHcCC--
Q 009850          154 GKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNN----K---MCNLGICLMKQGR--  224 (524)
Q Consensus       154 ~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~----~---~~~Lg~~~~~~G~--  224 (524)
                                        .-....++..+|.+.+-.|++++|..+.+++.++...+.    .   .+..+.++..+|+  
T Consensus       493 ------------------~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~  554 (894)
T COG2909         493 ------------------YRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVA  554 (894)
T ss_pred             ------------------chhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHH
Confidence                              111245778899999999999999999999998754332    2   3456888889994  


Q ss_pred             HHHHHHHHHHhcccccCCC-----------------cCHHHHH----HHHHHHHHhCCCCH--H-HHHHHHHHHHHcCCH
Q 009850          225 IGEAKETLRRVKPAVADGP-----------------RGVDSHL----KAYERAQQMLKDLE--S-EMMNKGGDRVEQSRL  280 (524)
Q Consensus       225 ~~eA~~~~~~a~~~~~~~~-----------------~~~~~A~----~~~~~al~~~p~~~--~-a~~~lg~~~~~~g~~  280 (524)
                      +.+....|...........                 .+.+.+.    ..+.-.....|..-  . +.+.++.++...|++
T Consensus       555 ~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl  634 (894)
T COG2909         555 RAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDL  634 (894)
T ss_pred             HHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCH
Confidence            3344444444322211111                 1112111    11222222222222  2 224789999999999


Q ss_pred             HHHHHHHhhcc
Q 009850          281 FDAFLGSSSIW  291 (524)
Q Consensus       281 ~eAi~~~~~al  291 (524)
                      ++|........
T Consensus       635 ~~A~~~l~~~~  645 (894)
T COG2909         635 DKALAQLDELE  645 (894)
T ss_pred             HHHHHHHHHHH
Confidence            99988765444

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=94.49  E-value=0.086  Score=35.13  Aligned_cols=29  Identities=38%  Similarity=0.378  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 009850          177 RLLGNLGWALMQQNNYIEAEDAYRRALSI  205 (524)
Q Consensus       177 ~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l  205 (524)
                      .++.++|.+|...|++++|+.++++++.+
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            47788999999999999999999998875

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=94.30  E-value=1.3  Score=47.96  Aligned_cols=183  Identities=14%  Similarity=0.034  Sum_probs=95.0

Q ss_pred             hHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH----------HHHHHHHcCC
Q 009850           62 PEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNI----------LLDLYKRCGR  131 (524)
Q Consensus        62 ~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~----------lg~~~~~~g~  131 (524)
                      .++|++.    ++.+|+ +..|..+|......-.++-|...|-++-....    ..+-..          .+.+-.--|+
T Consensus       679 ledA~qf----iEdnPH-prLWrllAe~Al~Kl~l~tAE~AFVrc~dY~G----ik~vkrl~~i~s~~~q~aei~~~~g~  749 (1189)
T KOG2041|consen  679 LEDAIQF----IEDNPH-PRLWRLLAEYALFKLALDTAEHAFVRCGDYAG----IKLVKRLRTIHSKEQQRAEISAFYGE  749 (1189)
T ss_pred             hHHHHHH----HhcCCc-hHHHHHHHHHHHHHHhhhhHhhhhhhhccccc----hhHHHHhhhhhhHHHHhHhHhhhhcc
Confidence            4455443    344564 78888888877776677777766655422111    011111          1222233488


Q ss_pred             hHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhc----CCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009850          132 LDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSV----EQEA---TRLLGNLGWALMQQNNYIEAEDAYRRALS  204 (524)
Q Consensus       132 ~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~----~p~~---~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~  204 (524)
                      +++|.+.|-.+-+.+ ....+..+..    .+.+-+++..    +.++   -.++.++|..+..+..|++|.++|...-.
T Consensus       750 feeaek~yld~drrD-LAielr~klg----DwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~  824 (1189)
T KOG2041|consen  750 FEEAEKLYLDADRRD-LAIELRKKLG----DWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD  824 (1189)
T ss_pred             hhHhhhhhhccchhh-hhHHHHHhhh----hHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            888888886553221 0000000000    0000001000    1111   34666666666666666666666654321


Q ss_pred             hCCCcHHHHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 009850          205 IAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAF  284 (524)
Q Consensus       205 l~P~~~~~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi  284 (524)
                             .-++..|++.+.+|++-                         +......|++...+-.+|..+...|.-++|+
T Consensus       825 -------~e~~~ecly~le~f~~L-------------------------E~la~~Lpe~s~llp~~a~mf~svGMC~qAV  872 (1189)
T KOG2041|consen  825 -------TENQIECLYRLELFGEL-------------------------EVLARTLPEDSELLPVMADMFTSVGMCDQAV  872 (1189)
T ss_pred             -------hHhHHHHHHHHHhhhhH-------------------------HHHHHhcCcccchHHHHHHHHHhhchHHHHH
Confidence                   23345555555555442                         2344456677777777888888888888888


Q ss_pred             HHHhhc
Q 009850          285 LGSSSI  290 (524)
Q Consensus       285 ~~~~~a  290 (524)
                      .+|-+.
T Consensus       873 ~a~Lr~  878 (1189)
T KOG2041|consen  873 EAYLRR  878 (1189)
T ss_pred             HHHHhc
Confidence            876543

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=94.29  E-value=1.8  Score=44.75  Aligned_cols=59  Identities=29%  Similarity=0.334  Sum_probs=49.7

Q ss_pred             HHHHHHH--HHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHh
Q 009850          176 TRLLGNL--GWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRV  235 (524)
Q Consensus       176 ~~a~~~L--g~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a  235 (524)
                      .+.-+.|  |..++..|+|.++.-+-.-..+++| .+. +-.+|.|+....+|++|..++...
T Consensus       460 ~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L  521 (549)
T PF07079_consen  460 EEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL  521 (549)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence            3444444  4557889999999999999999999 445 889999999999999999999965

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=94.16  E-value=0.23  Score=35.64  Aligned_cols=42  Identities=12%  Similarity=-0.143  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 009850           48 PYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIV   89 (524)
Q Consensus        48 ~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~   89 (524)
                      -++.+|..+++.|+|++|..+.+.+++.+|++..+......+
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i   44 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI   44 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence            467899999999999999999999999999999887655444

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=93.75  E-value=3.2  Score=44.38  Aligned_cols=39  Identities=26%  Similarity=0.164  Sum_probs=17.5

Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHH-HHhhCCCcH
Q 009850          172 EQEATRLLGNLGWALMQQNNYIEAEDAYRR-ALSIAPDNN  210 (524)
Q Consensus       172 ~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~-Al~l~P~~~  210 (524)
                      +|.+..+..+||......|....+...+.+ +....|++.
T Consensus        97 ~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~  136 (620)
T COG3914          97 NPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNA  136 (620)
T ss_pred             CcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchH
Confidence            444444555555444444444333333333 444444443

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=93.56  E-value=0.21  Score=48.84  Aligned_cols=65  Identities=20%  Similarity=0.153  Sum_probs=58.3

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 009850           50 VRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQA  114 (524)
Q Consensus        50 ~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~  114 (524)
                      .+.+.-....|+.++|..+|..|+.+.|++++++..+|......++.-+|-.+|-+++.+.|.+.
T Consensus       120 l~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~ns  184 (472)
T KOG3824|consen  120 LKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNS  184 (472)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCch
Confidence            34555667889999999999999999999999999999999999999999999999999999875

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=93.52  E-value=0.76  Score=48.01  Aligned_cols=85  Identities=14%  Similarity=0.084  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHH
Q 009850           99 AIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRL  178 (524)
Q Consensus        99 Ai~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a  178 (524)
                      -...|+.+....+.+.  .+|........+.+.+.+--..|.+++..                          +|++++.
T Consensus        90 Iv~lyr~at~rf~~D~--~lW~~yi~f~kk~~~~~~v~ki~~~~l~~--------------------------Hp~~~dL  141 (568)
T KOG2396|consen   90 IVFLYRRATNRFNGDV--KLWLSYIAFCKKKKTYGEVKKIFAAMLAK--------------------------HPNNPDL  141 (568)
T ss_pred             HHHHHHHHHHhcCCCH--HHHHHHHHHHHHhcchhHHHHHHHHHHHh--------------------------CCCCchh
Confidence            3456666666666665  55555555445555566766777777766                          6777777


Q ss_pred             HHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCcHH
Q 009850          179 LGNLGWALMQQNN-YIEAEDAYRRALSIAPDNNK  211 (524)
Q Consensus       179 ~~~Lg~~~~~~g~-~~eAi~~~~~Al~l~P~~~~  211 (524)
                      |..-+...+.-+. .+.|...|.++|+.+|+++.
T Consensus       142 WI~aA~wefe~n~ni~saRalflrgLR~npdsp~  175 (568)
T KOG2396|consen  142 WIYAAKWEFEINLNIESARALFLRGLRFNPDSPK  175 (568)
T ss_pred             HHhhhhhHHhhccchHHHHHHHHHHhhcCCCChH
Confidence            7777666666554 67777777777777777766

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=93.46  E-value=0.099  Score=49.06  Aligned_cols=59  Identities=20%  Similarity=0.253  Sum_probs=46.8

Q ss_pred             HHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 009850          127 KRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIA  206 (524)
Q Consensus       127 ~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~  206 (524)
                      ...++.+.|.+.|.+++.+                          -|+....|+.+|....+.|+++.|...|++.++++
T Consensus         6 ~~~~D~~aaaely~qal~l--------------------------ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld   59 (287)
T COG4976           6 AESGDAEAAAELYNQALEL--------------------------APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD   59 (287)
T ss_pred             cccCChHHHHHHHHHHhhc--------------------------CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence            4567778888888888877                          67788888888888888888888888888888888


Q ss_pred             CCcHH
Q 009850          207 PDNNK  211 (524)
Q Consensus       207 P~~~~  211 (524)
                      |++..
T Consensus        60 p~D~~   64 (287)
T COG4976          60 PEDHG   64 (287)
T ss_pred             ccccc
Confidence            87643

>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]

Probab=93.40  E-value=8.1  Score=38.54  Aligned_cols=92  Identities=14%  Similarity=0.095  Sum_probs=51.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH---HHHHHHHHHHcCCHHHHHHHHHHhcc-------------------
Q 009850          180 GNLGWALMQQNNYIEAEDAYRRALSIAPDNNK---MCNLGICLMKQGRIGEAKETLRRVKP-------------------  237 (524)
Q Consensus       180 ~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~---~~~Lg~~~~~~G~~~eA~~~~~~a~~-------------------  237 (524)
                      ..|+.|..++|+..+|++.++...+-.|-...   +-||-.++.++.-|.+-...+.+...                   
T Consensus       279 RRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdislPkSA~icYTaALLK~R  358 (556)
T KOG3807|consen  279 RRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISLPKSAAICYTAALLKTR  358 (556)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchHHHHHHHHHHHHH
Confidence            45677777777777777777777766663322   34555555554444433333332210                   


Q ss_pred             -----cccCCC--c----CHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 009850          238 -----AVADGP--R----GVDSHLKAYERAQQMLKDLESEMMNKG  271 (524)
Q Consensus       238 -----~~~~~~--~----~~~~A~~~~~~al~~~p~~~~a~~~lg  271 (524)
                           ..++..  .    .--.|++...++.+.+|..+..+..+-
T Consensus       359 AVa~kFspd~asrRGLS~AE~~AvEAihRAvEFNPHVPkYLLE~k  403 (556)
T KOG3807|consen  359 AVSEKFSPETASRRGLSTAEINAVEAIHRAVEFNPHVPKYLLEMK  403 (556)
T ss_pred             HHHhhcCchhhhhccccHHHHHHHHHHHHHhhcCCCCcHHHHHHH
Confidence                 011111  1    112367788888888888877665553

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=93.19  E-value=0.14  Score=48.04  Aligned_cols=60  Identities=12%  Similarity=0.084  Sum_probs=56.4

Q ss_pred             HHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 009850           54 NVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQ  113 (524)
Q Consensus        54 ~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~  113 (524)
                      ......++.+.|.+.|.+++.+.|+....|+.+|....+.|+++.|...|++.++++|.+
T Consensus         3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D   62 (287)
T COG4976           3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED   62 (287)
T ss_pred             chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence            345778999999999999999999999999999999999999999999999999999976

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=93.16  E-value=3  Score=42.58  Aligned_cols=144  Identities=19%  Similarity=0.158  Sum_probs=100.4

Q ss_pred             hHHHHHH--HHHHHHcCChHHHHHHHHHHHHc----C-----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----
Q 009850           46 DTPYVRA--KNVQLVDKDPEKAIPLFWAAINA----G-----DRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRC----  110 (524)
Q Consensus        46 ~~~~~~l--g~~~~~~g~~~~Ai~~~~~al~~----~-----p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~----  110 (524)
                      .++|..+  ...++.+.++.+|..+-+..+..    +     --.+..|+.+..+|...|+...-...+...+...    
T Consensus       124 i~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrh  203 (493)
T KOG2581|consen  124 IEAYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRH  203 (493)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcC
Confidence            3445433  33345568999999888776643    1     1134567888888888998766655555544432    


Q ss_pred             CCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 009850          111 SDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQN  190 (524)
Q Consensus       111 p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g  190 (524)
                      .......+.+.+...|...+.|+.|.....+..--.                      ...+...+..++.+|.+..-++
T Consensus       204 d~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe----------------------~~snne~ARY~yY~GrIkaiql  261 (493)
T KOG2581|consen  204 DEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPE----------------------AASNNEWARYLYYLGRIKAIQL  261 (493)
T ss_pred             cchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCcc----------------------ccccHHHHHHHHHHhhHHHhhc
Confidence            233445777888899999999999988877664210                      0001233667888999999999


Q ss_pred             CHHHHHHHHHHHHhhCCCcHH
Q 009850          191 NYIEAEDAYRRALSIAPDNNK  211 (524)
Q Consensus       191 ~~~eAi~~~~~Al~l~P~~~~  211 (524)
                      +|..|.++|-+|+...|.+..
T Consensus       262 dYssA~~~~~qa~rkapq~~a  282 (493)
T KOG2581|consen  262 DYSSALEYFLQALRKAPQHAA  282 (493)
T ss_pred             chhHHHHHHHHHHHhCcchhh
Confidence            999999999999999998644

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=93.15  E-value=2.7  Score=40.63  Aligned_cols=197  Identities=13%  Similarity=0.132  Sum_probs=114.6

Q ss_pred             HHcCChHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CcHHHHHHHHHHHHHH
Q 009850           57 LVDKDPEKAIPLFWAAINAGDRVD----SALKDMAIVMKQQNRAEEAIEAIKSLRSRCS-----DQAQESLDNILLDLYK  127 (524)
Q Consensus        57 ~~~g~~~~Ai~~~~~al~~~p~~~----~a~~~La~~~~~~g~~~eAi~~~~~al~~~p-----~~~~~~l~~~lg~~~~  127 (524)
                      +...++++|+..|++++++.+.-.    .++..+..+++++|+|++-+..|.+.+..-.     +... ...+...+.-.
T Consensus        38 l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySE-KsIN~IlDyiS  116 (440)
T KOG1464|consen   38 LKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSE-KSINSILDYIS  116 (440)
T ss_pred             ccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccH-HHHHHHHHHHh
Confidence            345689999999999999987654    4567788899999999999998888665321     1111 11122222222


Q ss_pred             HcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHH----HHHHHHHHHcCCHHHHHHHHHHHH
Q 009850          128 RCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLL----GNLGWALMQQNNYIEAEDAYRRAL  203 (524)
Q Consensus       128 ~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~----~~Lg~~~~~~g~~~eAi~~~~~Al  203 (524)
                      ...+.+--..+|+..+...                        .+..+-..|    ..||.+|+..|.|..-...+++.-
T Consensus       117 tS~~m~LLQ~FYeTTL~AL------------------------kdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh  172 (440)
T KOG1464|consen  117 TSKNMDLLQEFYETTLDAL------------------------KDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLH  172 (440)
T ss_pred             hhhhhHHHHHHHHHHHHHH------------------------HhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHH
Confidence            2333343344444443320                        022232233    468999999999988888877765


Q ss_pred             hhCCCc-----H-------H-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHH-----
Q 009850          204 SIAPDN-----N-------K-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLES-----  265 (524)
Q Consensus       204 ~l~P~~-----~-------~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-----  265 (524)
                      ......     .       . |..--..|..+.+...-...|+++                     +......+.     
T Consensus       173 ~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqa---------------------lhiKSAIPHPlImG  231 (440)
T KOG1464|consen  173 QSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQA---------------------LHIKSAIPHPLIMG  231 (440)
T ss_pred             HHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHH---------------------HHhhccCCchHHHh
Confidence            532111     0       1 222233455555555555566644                     333221111     


Q ss_pred             -HHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCC
Q 009850          266 -EMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  299 (524)
Q Consensus       266 -a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~  299 (524)
                       ..-.=|..+.+.|++++|-..|-.|++.....+.
T Consensus       232 vIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGs  266 (440)
T KOG1464|consen  232 VIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGS  266 (440)
T ss_pred             HHHHcCCccccccchHHHHHhHHHHHHhcccccCC
Confidence             1112256788889999999988888876544443

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=93.07  E-value=0.22  Score=33.04  Aligned_cols=28  Identities=32%  Similarity=0.396  Sum_probs=15.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 009850           82 ALKDMAIVMKQQNRAEEAIEAIKSLRSR  109 (524)
Q Consensus        82 a~~~La~~~~~~g~~~eAi~~~~~al~~  109 (524)
                      ++.++|.+|..+|++++|+.++++++.+
T Consensus         4 ~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    4 ALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            4555555555555555555555555543

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=93.04  E-value=1.3  Score=39.00  Aligned_cols=82  Identities=13%  Similarity=0.037  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Q 009850           49 YVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKR  128 (524)
Q Consensus        49 ~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~  128 (524)
                      ...+.......++++++...+...--+.|+.++.-..-|.++...|+|.+|+..++......+..+.  ..-.++.++..
T Consensus        13 Li~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~--~kAL~A~CL~a   90 (153)
T TIGR02561        13 LIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPY--GKALLALCLNA   90 (153)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchH--HHHHHHHHHHh
Confidence            3444455566999999999999988899999999999999999999999999999999888777663  33455666677


Q ss_pred             cCCh
Q 009850          129 CGRL  132 (524)
Q Consensus       129 ~g~~  132 (524)
                      +|+.
T Consensus        91 l~Dp   94 (153)
T TIGR02561        91 KGDA   94 (153)
T ss_pred             cCCh
Confidence            7764

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=92.83  E-value=1.5  Score=38.71  Aligned_cols=73  Identities=29%  Similarity=0.311  Sum_probs=57.8

Q ss_pred             HcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 009850          128 RCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAP  207 (524)
Q Consensus       128 ~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P  207 (524)
                      ..++.+++...+...--+                          .|+.+.+-..-|++++..|+|.+|+..|+...+-.+
T Consensus        22 ~~~d~~D~e~lLdALrvL--------------------------rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~   75 (153)
T TIGR02561        22 RSADPYDAQAMLDALRVL--------------------------RPNLKELDMFDGWLLIARGNYDEAARILRELLSSAG   75 (153)
T ss_pred             hcCCHHHHHHHHHHHHHh--------------------------CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCC
Confidence            467777777766644434                          788888889999999999999999999999988777


Q ss_pred             CcHH-HHHHHHHHHHcCCHH
Q 009850          208 DNNK-MCNLGICLMKQGRIG  226 (524)
Q Consensus       208 ~~~~-~~~Lg~~~~~~G~~~  226 (524)
                      ..+. .-.++.|+.-+|+.+
T Consensus        76 ~~p~~kAL~A~CL~al~Dp~   95 (153)
T TIGR02561        76 APPYGKALLALCLNAKGDAE   95 (153)
T ss_pred             CchHHHHHHHHHHHhcCChH
Confidence            7666 667888888888743

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=92.75  E-value=0.66  Score=48.12  Aligned_cols=126  Identities=14%  Similarity=0.031  Sum_probs=81.5

Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHH
Q 009850          172 EQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPD-NNKMCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHL  250 (524)
Q Consensus       172 ~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~  250 (524)
                      .|.++......+.+...+|+|++|...+..+-.+-.. +...-.+-..+..+|++++|...-+-.+...           
T Consensus       319 ~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~e-----------  387 (831)
T PRK15180        319 QQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNE-----------  387 (831)
T ss_pred             CCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccc-----------
Confidence            5777777777888888888888888877766554332 2333334556678888888877766433222           


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCccccccccccccccccccccc
Q 009850          251 KAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTTNAIKTRDDFADENIDS  320 (524)
Q Consensus       251 ~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~l~~~~l~~~~q~lgd~~~~~  320 (524)
                                -+.++...--+..-..+|-++++...+++.+.++|.....-  .+.+..-|-+.|.+.|+
T Consensus       388 ----------ie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~--v~~~~~~~~~~~~~~~~  445 (831)
T PRK15180        388 ----------IEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGW--VNFLSSTQYFNDGNAFS  445 (831)
T ss_pred             ----------cCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccc--eeeeccceeccCcchHH
Confidence                      22333332333344556778888999999998888765532  14666667777777764

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=92.46  E-value=1.4  Score=46.20  Aligned_cols=86  Identities=10%  Similarity=0.023  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCC-hHHHHHHHHHH
Q 009850           64 KAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGR-LDDQIALLKHK  142 (524)
Q Consensus        64 ~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~-~~eA~~~~~~a  142 (524)
                      .-...|+.|+...+.+...|........+.+.+.+--..|.+++..+|+++  .+|..-+.-.+.-+. .+.|...|.++
T Consensus        89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~--dLWI~aA~wefe~n~ni~saRalflrg  166 (568)
T KOG2396|consen   89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNP--DLWIYAAKWEFEINLNIESARALFLRG  166 (568)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCc--hhHHhhhhhHHhhccchHHHHHHHHHH
Confidence            445688999999998999999988888888889999999999999999987  566555544445554 88999999999


Q ss_pred             HHHhhccHh
Q 009850          143 LYLIQQGLA  151 (524)
Q Consensus       143 l~l~~~~~~  151 (524)
                      ++.++....
T Consensus       167 LR~npdsp~  175 (568)
T KOG2396|consen  167 LRFNPDSPK  175 (568)
T ss_pred             hhcCCCChH
Confidence            998544333

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=92.37  E-value=0.95  Score=52.48  Aligned_cols=168  Identities=14%  Similarity=0.025  Sum_probs=116.7

Q ss_pred             HHHHHHHHHHcCChHHHHH------HHHHHH-HcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CcHH-
Q 009850           49 YVRAKNVQLVDKDPEKAIP------LFWAAI-NAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCS-----DQAQ-  115 (524)
Q Consensus        49 ~~~lg~~~~~~g~~~~Ai~------~~~~al-~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p-----~~~~-  115 (524)
                      .+..|......|.+.+|.+      .+.... .+.|+....+..|+.++.++|++++|+..-.++.-...     +.+. 
T Consensus       935 ~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t 1014 (1236)
T KOG1839|consen  935 SPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNT 1014 (1236)
T ss_pred             hhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHH
Confidence            4566777777888887777      555333 34789999999999999999999999999887655432     1111 


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Q 009850          116 ESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEA  195 (524)
Q Consensus       116 ~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eA  195 (524)
                      ...+..++......++...|+..+.++..+......                  ...|.-+....+++.++...++++.|
T Consensus      1015 ~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~g------------------e~hP~~a~~~~nle~l~~~v~e~d~a 1076 (1236)
T KOG1839|consen 1015 KLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSG------------------EDHPPTALSFINLELLLLGVEEADTA 1076 (1236)
T ss_pred             HHHhhHHHHHHHhccCccchhhhHHHHHHhhccccC------------------CCCCchhhhhhHHHHHHhhHHHHHHH
Confidence            234445566667778888899888888776311110                  01466677778999999999999999


Q ss_pred             HHHHHHHHhhCCCc-----HH----HHHHHHHHHHcCCHHHHHHHHHH
Q 009850          196 EDAYRRALSIAPDN-----NK----MCNLGICLMKQGRIGEAKETLRR  234 (524)
Q Consensus       196 i~~~~~Al~l~P~~-----~~----~~~Lg~~~~~~G~~~eA~~~~~~  234 (524)
                      +.+.+.|+...-..     ..    +..++..+...|++..|....+.
T Consensus      1077 l~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~ 1124 (1236)
T KOG1839|consen 1077 LRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKV 1124 (1236)
T ss_pred             HHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhh
Confidence            99999999854322     11    44555555566666665555553

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=92.29  E-value=0.36  Score=50.58  Aligned_cols=106  Identities=17%  Similarity=0.149  Sum_probs=81.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHH
Q 009850          176 TRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYE  254 (524)
Q Consensus       176 ~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~  254 (524)
                      .+.+..-|+-.+..+.+..|+..|.+++...|+... +++.+.++++.+=...+...+                  ....
T Consensus       374 ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~Al------------------rDch  435 (758)
T KOG1310|consen  374 IEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLAL------------------RDCH  435 (758)
T ss_pred             HHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHH------------------HhHH
Confidence            344444455555566788999999999999999988 999999988865333322222                  2233


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCC
Q 009850          255 RAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  299 (524)
Q Consensus       255 ~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~  299 (524)
                      .+++++|....+|+.|+.++.+++++.+|+.+...+....|.+..
T Consensus       436 ~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd~a  480 (758)
T KOG1310|consen  436 VALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTDVA  480 (758)
T ss_pred             hhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhhh
Confidence            888999999999999999999999999999998888777785443

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.84  E-value=20  Score=38.47  Aligned_cols=156  Identities=13%  Similarity=0.038  Sum_probs=98.7

Q ss_pred             cCChHHHHHHHHHHHHc------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCC---------
Q 009850           59 DKDPEKAIPLFWAAINA------------GDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSR-----CSD---------  112 (524)
Q Consensus        59 ~g~~~~Ai~~~~~al~~------------~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~-----~p~---------  112 (524)
                      ..-|++|...|.-+...            .|.+.+.+..++.++..+|+.+-|..++++++=.     +|.         
T Consensus       251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR  330 (665)
T KOG2422|consen  251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR  330 (665)
T ss_pred             chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence            34566777777777664            5778899999999999999999998888886532     221         


Q ss_pred             -------cH-HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCC-cHH-HHHHH
Q 009850          113 -------QA-QESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQE-ATR-LLGNL  182 (524)
Q Consensus       113 -------~~-~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~-~~~-a~~~L  182 (524)
                             +- .+.+.+.....+.+.|.+.-|.++.+-.+.+                          +|. ++- +.+.+
T Consensus       331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsL--------------------------dp~eDPl~~l~~I  384 (665)
T KOG2422|consen  331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSL--------------------------DPSEDPLGILYLI  384 (665)
T ss_pred             CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--------------------------CCcCCchhHHHHH
Confidence                   10 1223333344556789999999999888887                          676 543 44444


Q ss_pred             HHHHHHcCCHHHHHHHHHHHH-----hhCCCcHHHHHHHHHHHHcCC---HHHHHHHHHHhccccc
Q 009850          183 GWALMQQNNYIEAEDAYRRAL-----SIAPDNNKMCNLGICLMKQGR---IGEAKETLRRVKPAVA  240 (524)
Q Consensus       183 g~~~~~~g~~~eAi~~~~~Al-----~l~P~~~~~~~Lg~~~~~~G~---~~eA~~~~~~a~~~~~  240 (524)
                      -....+..+|+==|+.++..-     ..-|+...-..+|..|.....   -..|...+.+|...+|
T Consensus       385 D~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P  450 (665)
T KOG2422|consen  385 DIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALKHHP  450 (665)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence            445556677776666666652     333443333445555555544   3456666665544443

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=91.82  E-value=0.91  Score=36.83  Aligned_cols=68  Identities=21%  Similarity=0.197  Sum_probs=48.6

Q ss_pred             HHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 009850          127 KRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIA  206 (524)
Q Consensus       127 ~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~  206 (524)
                      .+.|+|.+|++.+.+.............                 .-....++.++|.++...|++++|+..+++++.+.
T Consensus         9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~-----------------~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A   71 (94)
T PF12862_consen    9 LRSGDYSEALDALHRYFDYAKQSNNSSS-----------------NSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA   71 (94)
T ss_pred             HHcCCHHHHHHHHHHHHHHHhhcccchh-----------------hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            4789999999998888766211110000                 00124578889999999999999999999999987


Q ss_pred             CCcHH
Q 009850          207 PDNNK  211 (524)
Q Consensus       207 P~~~~  211 (524)
                      ....+
T Consensus        72 re~~D   76 (94)
T PF12862_consen   72 RENGD   76 (94)
T ss_pred             HHHCC
Confidence            65544

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=91.82  E-value=2.3  Score=41.86  Aligned_cols=61  Identities=18%  Similarity=0.206  Sum_probs=57.3

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHh
Q 009850          175 ATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRV  235 (524)
Q Consensus       175 ~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a  235 (524)
                      ...++..++..+...|+++.++..+++.+..+|.+.. |..+-..|...|+...|+..|++.
T Consensus       152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l  213 (280)
T COG3629         152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQL  213 (280)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence            4568889999999999999999999999999999988 999999999999999999999975

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=91.71  E-value=22  Score=39.42  Aligned_cols=166  Identities=14%  Similarity=0.137  Sum_probs=111.1

Q ss_pred             ChHHHHHHHHHHH-HcCChHHHHHHHHHHHHcC--CCcHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cH
Q 009850           45 GDTPYVRAKNVQL-VDKDPEKAIPLFWAAINAG--DRVDS----ALKDMAIVMKQQNRAEEAIEAIKSLRSRCSD---QA  114 (524)
Q Consensus        45 ~~~~~~~lg~~~~-~~g~~~~Ai~~~~~al~~~--p~~~~----a~~~La~~~~~~g~~~eAi~~~~~al~~~p~---~~  114 (524)
                      ....++++|.+++ ...+++.|..++.+++.+.  ++..+    +.+.++.++.+.+... |...++++++....   ..
T Consensus        58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~  136 (608)
T PF10345_consen   58 EARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSA  136 (608)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchh
Confidence            3346788999888 7899999999999998775  33332    3456789999988877 99999998887665   23


Q ss_pred             HHHHHHHH-HHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcH----HHHHHHHHHHHHc
Q 009850          115 QESLDNIL-LDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEAT----RLLGNLGWALMQQ  189 (524)
Q Consensus       115 ~~~l~~~l-g~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~----~a~~~Lg~~~~~~  189 (524)
                      +..++..+ ...+...+++..|++.++.......                        ..+++    -+....+.++...
T Consensus       137 w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~------------------------~~~d~~~~v~~~l~~~~l~l~~  192 (608)
T PF10345_consen  137 WYYAFRLLKIQLALQHKDYNAALENLQSIAQLAN------------------------QRGDPAVFVLASLSEALLHLRR  192 (608)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhh------------------------hcCCHHHHHHHHHHHHHHHhcC
Confidence            32222222 3334344799999999998877611                        12232    2334446777778


Q ss_pred             CCHHHHHHHHHHHHhhC------CCc--HH---HHHH--HHHHHHcCCHHHHHHHHHHh
Q 009850          190 NNYIEAEDAYRRALSIA------PDN--NK---MCNL--GICLMKQGRIGEAKETLRRV  235 (524)
Q Consensus       190 g~~~eAi~~~~~Al~l~------P~~--~~---~~~L--g~~~~~~G~~~eA~~~~~~a  235 (524)
                      +..+++++..+++....      |+.  +.   |+.+  -.++...|++..+...+++.
T Consensus       193 ~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l  251 (608)
T PF10345_consen  193 GSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL  251 (608)
T ss_pred             CCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            88888988888885422      221  11   3332  33567788888887777664

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=91.45  E-value=12  Score=39.68  Aligned_cols=119  Identities=20%  Similarity=0.241  Sum_probs=68.0

Q ss_pred             HHHcCChHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHH
Q 009850           56 QLVDKDPEKAIPLFWAAINAGDRV-DSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDD  134 (524)
Q Consensus        56 ~~~~g~~~~Ai~~~~~al~~~p~~-~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~e  134 (524)
                      ....|+++++....+.. ++-|.- ......++..+.++|..+.|+...       .+ +  ...+.   +..++|+++.
T Consensus       271 av~~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~-------~D-~--~~rFe---LAl~lg~L~~  336 (443)
T PF04053_consen  271 AVLRGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFV-------TD-P--DHRFE---LALQLGNLDI  336 (443)
T ss_dssp             HHHTT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHS-------S--H--HHHHH---HHHHCT-HHH
T ss_pred             HHHcCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhc-------CC-h--HHHhH---HHHhcCCHHH
Confidence            35678888877766422 111222 233556677777888877776643       22 2  22222   3347888888


Q ss_pred             HHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHH
Q 009850          135 QIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNKMCN  214 (524)
Q Consensus       135 A~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~~~~  214 (524)
                      |.+..+                               ..++...|..||...+.+|+++-|+.+|+++-.       +..
T Consensus       337 A~~~a~-------------------------------~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-------~~~  378 (443)
T PF04053_consen  337 ALEIAK-------------------------------ELDDPEKWKQLGDEALRQGNIELAEECYQKAKD-------FSG  378 (443)
T ss_dssp             HHHHCC-------------------------------CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT--------HHH
T ss_pred             HHHHHH-------------------------------hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-------ccc
Confidence            766543                               345677999999999999999999999987633       444


Q ss_pred             HHHHHHHcCCHH
Q 009850          215 LGICLMKQGRIG  226 (524)
Q Consensus       215 Lg~~~~~~G~~~  226 (524)
                      |...|.-.|+.+
T Consensus       379 L~lLy~~~g~~~  390 (443)
T PF04053_consen  379 LLLLYSSTGDRE  390 (443)
T ss_dssp             HHHHHHHCT-HH
T ss_pred             cHHHHHHhCCHH
Confidence            555555556543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=91.44  E-value=0.9  Score=47.73  Aligned_cols=103  Identities=12%  Similarity=-0.011  Sum_probs=82.5

Q ss_pred             cCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCcHHHH
Q 009850           41 KVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQN---RAEEAIEAIKSLRSRCSDQAQES  117 (524)
Q Consensus        41 ~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g---~~~eAi~~~~~al~~~p~~~~~~  117 (524)
                      .+|...+-+..-|.-.+..+....|+..|.+++...|+....+.+.+.++++.+   +.-.|+.....+++++|...  .
T Consensus       369 eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~--k  446 (758)
T KOG1310|consen  369 ELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQ--K  446 (758)
T ss_pred             hchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHH--H
Confidence            344555556666666677778899999999999999999999999999998865   55566677777888888765  7


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 009850          118 LDNILLDLYKRCGRLDDQIALLKHKLYL  145 (524)
Q Consensus       118 l~~~lg~~~~~~g~~~eA~~~~~~al~l  145 (524)
                      +++.|+.++..++++.+|+.+...+...
T Consensus       447 ah~~la~aL~el~r~~eal~~~~alq~~  474 (758)
T KOG1310|consen  447 AHFRLARALNELTRYLEALSCHWALQMS  474 (758)
T ss_pred             HHHHHHHHHHHHhhHHHhhhhHHHHhhc
Confidence            8888999999999999999988765544

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=91.21  E-value=4.2  Score=41.81  Aligned_cols=104  Identities=13%  Similarity=0.068  Sum_probs=79.5

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcc---cHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 009850          121 ILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGK---RTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAED  197 (524)
Q Consensus       121 ~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~---~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~  197 (524)
                      .-+..+++++.|..|..-|+.++++...+.++..-   ..+.+...           ...+...|..||.++++.+-|+.
T Consensus       181 ~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~v-----------aSfIetklv~CYL~~rkpdlALn  249 (569)
T PF15015_consen  181 KDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSV-----------ASFIETKLVTCYLRMRKPDLALN  249 (569)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHH-----------HHHHHHHHHHhhhhcCCCchHHH
Confidence            33556788999999999999999997666554321   01111000           02245678999999999999999


Q ss_pred             HHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHh
Q 009850          198 AYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRV  235 (524)
Q Consensus       198 ~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a  235 (524)
                      +-.+.+.++|.+.. +...|.|+..+.+|.+|...+--+
T Consensus       250 h~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia  288 (569)
T PF15015_consen  250 HSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIA  288 (569)
T ss_pred             HHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999988 888999999999999998776644

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=90.79  E-value=9.2  Score=41.46  Aligned_cols=64  Identities=20%  Similarity=0.074  Sum_probs=40.8

Q ss_pred             cCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHc--------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 009850           41 KVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINA--------------GDRVDSALKDMAIVMKQQNRAEEAIEAIKS  105 (524)
Q Consensus        41 ~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~--------------~p~~~~a~~~La~~~~~~g~~~eAi~~~~~  105 (524)
                      .++....-|-.||...+..=+++-|...|.++-.+              ....+. -..+|.++.-.|++.+|.++|.+
T Consensus       580 clgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~-~iLlA~~~Ay~gKF~EAAklFk~  657 (1081)
T KOG1538|consen  580 CLGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPN-DLLLADVFAYQGKFHEAAKLFKR  657 (1081)
T ss_pred             ccceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCch-HHHHHHHHHhhhhHHHHHHHHHH
Confidence            44555556888888888888888888888765331              111111 23456666667777777777654

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=90.58  E-value=17  Score=40.24  Aligned_cols=150  Identities=12%  Similarity=0.105  Sum_probs=103.0

Q ss_pred             hHHHHHHHHHHHHcC---C-CcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHHHcCCh
Q 009850           62 PEKAIPLFWAAINAG---D-RVDSALKDMAIVMK-QQNRAEEAIEAIKSLRSRCSDQ----AQESLDNILLDLYKRCGRL  132 (524)
Q Consensus        62 ~~~Ai~~~~~al~~~---p-~~~~a~~~La~~~~-~~g~~~eAi~~~~~al~~~p~~----~~~~l~~~lg~~~~~~g~~  132 (524)
                      ...|+.+++.+++..   | ..+.+++.+|.++. ...++++|..++++++.+...+    ..+.+...++.+|.+.+..
T Consensus        37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~  116 (608)
T PF10345_consen   37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK  116 (608)
T ss_pred             HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence            456788888888522   2 13456778898877 7889999999999998887532    2345667788888888887


Q ss_pred             HHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHH--HHHHH-HHHHHHcCCHHHHHHHHHHHHhhC--C
Q 009850          133 DDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATR--LLGNL-GWALMQQNNYIEAEDAYRRALSIA--P  207 (524)
Q Consensus       133 ~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~--a~~~L-g~~~~~~g~~~eAi~~~~~Al~l~--P  207 (524)
                      . |...++++++....                       .+....  ++..+ ...+...+++..|++.++......  .
T Consensus       117 ~-a~~~l~~~I~~~~~-----------------------~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~  172 (608)
T PF10345_consen  117 A-ALKNLDKAIEDSET-----------------------YGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQR  172 (608)
T ss_pred             H-HHHHHHHHHHHHhc-----------------------cCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhc
Confidence            7 99999999887211                       122221  22222 233333479999999999998876  3


Q ss_pred             CcHH---H--HHHHHHHHHcCCHHHHHHHHHHh
Q 009850          208 DNNK---M--CNLGICLMKQGRIGEAKETLRRV  235 (524)
Q Consensus       208 ~~~~---~--~~Lg~~~~~~G~~~eA~~~~~~a  235 (524)
                      .++.   .  ...+.+....+..+++++..+++
T Consensus       173 ~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~  205 (608)
T PF10345_consen  173 GDPAVFVLASLSEALLHLRRGSPDDVLELLQRA  205 (608)
T ss_pred             CCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHH
Confidence            4444   2  23466667778788888888865

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=90.34  E-value=1.4  Score=35.63  Aligned_cols=56  Identities=18%  Similarity=0.189  Sum_probs=36.3

Q ss_pred             HHHcCChHHHHHHHHHHHHcCC---------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 009850           56 QLVDKDPEKAIPLFWAAINAGD---------RVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCS  111 (524)
Q Consensus        56 ~~~~g~~~~Ai~~~~~al~~~p---------~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p  111 (524)
                      .++.|+|.+|++.+.+.+....         ....++.++|.++...|++++|+..+++++++..
T Consensus         8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar   72 (94)
T PF12862_consen    8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR   72 (94)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            4567778888777776665421         1134556677777777777777777777766644

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=90.17  E-value=22  Score=44.35  Aligned_cols=98  Identities=15%  Similarity=0.071  Sum_probs=77.6

Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCC--------C-
Q 009850          174 EATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADG--------P-  243 (524)
Q Consensus       174 ~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~--------~-  243 (524)
                      .-+..|...|.+....|+++-|-.+.-.|.+..  -+. +...|..+...|+...|+..+++.+..+-.+        + 
T Consensus      1668 ~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~ 1745 (2382)
T KOG0890|consen 1668 RLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQ 1745 (2382)
T ss_pred             hhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccch
Confidence            347899999999999999999999999998877  334 7889999999999999999999975332222        1 


Q ss_pred             -----------------------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 009850          244 -----------------------RGVDSHLKAYERAQQMLKDLESEMMNKGGD  273 (524)
Q Consensus       244 -----------------------~~~~~A~~~~~~al~~~p~~~~a~~~lg~~  273 (524)
                                             ......++.|..+.+..|.+...|+.+|..
T Consensus      1746 ~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~y 1798 (2382)
T KOG0890|consen 1746 SVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKY 1798 (2382)
T ss_pred             hhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHH
Confidence                                   011334788999999999888888888843

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=89.91  E-value=2.2  Score=33.25  Aligned_cols=57  Identities=5%  Similarity=0.038  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHH---HHHHHHcCCHHHHHHHHHH
Q 009850           49 YVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDM---AIVMKQQNRAEEAIEAIKS  105 (524)
Q Consensus        49 ~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~L---a~~~~~~g~~~eAi~~~~~  105 (524)
                      ....|.-++.+.+.++|+..++++++..++.++.+..+   ..+|...|+|.+.+.+--+
T Consensus         9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~   68 (80)
T PF10579_consen    9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ   68 (80)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556666777777777777777777766655544433   3556666777766665544

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=89.91  E-value=6  Score=34.30  Aligned_cols=70  Identities=10%  Similarity=0.098  Sum_probs=45.7

Q ss_pred             ChHHHHHHHHHHHHcCC---hHHHHHHHHHHHH-cCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 009850           45 GDTPYVRAKNVQLVDKD---PEKAIPLFWAAIN-AGD-RVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQA  114 (524)
Q Consensus        45 ~~~~~~~lg~~~~~~g~---~~~Ai~~~~~al~-~~p-~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~  114 (524)
                      .-...|+++.++....+   ..+.+.+++..++ ..| ..-++++.|+..++++++|+.|+.+.+.+++..|++.
T Consensus        31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~  105 (149)
T KOG3364|consen   31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNR  105 (149)
T ss_pred             hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcH
Confidence            33456667766666543   4566777777775 333 2345677777777777777777777777777777765

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=89.85  E-value=1.4  Score=51.10  Aligned_cols=176  Identities=15%  Similarity=0.078  Sum_probs=118.9

Q ss_pred             HHHHHHHHHHcCCHHHHHH------HHHH-HHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcc
Q 009850           83 LKDMAIVMKQQNRAEEAIE------AIKS-LRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGK  155 (524)
Q Consensus        83 ~~~La~~~~~~g~~~eAi~------~~~~-al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~  155 (524)
                      ....|......|.+.+|.+      .+.. .-.+.|+.+  ..+..++.++.+.|++++|+..-.++.-+..+.....  
T Consensus       935 ~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~--~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~d-- 1010 (1236)
T KOG1839|consen  935 SPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVA--SKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKD-- 1010 (1236)
T ss_pred             hhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHH--HHHHHHHHHHhhhcchHHHHHhcccceeeechhccCC--
Confidence            4455666777777887777      4442 222344544  6778899999999999999998888765532221111  


Q ss_pred             cHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCcHH----HHHHHHHHHHcCCHH
Q 009850          156 RTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSI-----APDNNK----MCNLGICLMKQGRIG  226 (524)
Q Consensus       156 ~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l-----~P~~~~----~~~Lg~~~~~~G~~~  226 (524)
                                      .|+....+.+++...+..++...|...+.++..+     .|++|.    ..+++.++...++++
T Consensus      1011 ----------------s~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d 1074 (1236)
T KOG1839|consen 1011 ----------------SPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEAD 1074 (1236)
T ss_pred             ----------------CHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHH
Confidence                            3666778899999999999999999999998875     344433    678999999999999


Q ss_pred             HHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcc
Q 009850          227 EAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIW  291 (524)
Q Consensus       227 eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al  291 (524)
                      -|+.+.+.|......-.+.             ..-..+..+..++..+...+++..|+...+..+
T Consensus      1075 ~al~~le~A~a~~~~v~g~-------------~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~ 1126 (1236)
T KOG1839|consen 1075 TALRYLESALAKNKKVLGP-------------KELETALSYHALARLFESMKDFRNALEHEKVTY 1126 (1236)
T ss_pred             HHHHHHHHHHHHHhhhcCc-------------cchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHH
Confidence            9999999874422111100             011223345566777777777777766655444

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.79  E-value=2.6  Score=45.37  Aligned_cols=102  Identities=13%  Similarity=0.065  Sum_probs=77.7

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 009850          118 LDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAED  197 (524)
Q Consensus       118 l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~  197 (524)
                      +...-+.-+++..+|..++++|...+...+.+..                    +...+....++..||..+.+.+.|.+
T Consensus       356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~--------------------~~~FaK~qR~l~~CYL~L~QLD~A~E  415 (872)
T KOG4814|consen  356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNY--------------------SDRFAKIQRALQVCYLKLEQLDNAVE  415 (872)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhh--------------------hhHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            3344456677888999999999988876322211                    22335678899999999999999999


Q ss_pred             HHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccc
Q 009850          198 AYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAV  239 (524)
Q Consensus       198 ~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~  239 (524)
                      ++++|-+.+|.++- -..+-.+...-|.-++|+.+........
T Consensus       416 ~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~  458 (872)
T KOG4814|consen  416 VYQEAEEVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSE  458 (872)
T ss_pred             HHHHHHhhccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhh
Confidence            99999999999987 5555666667788899999888764433

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=89.78  E-value=7.8  Score=35.19  Aligned_cols=97  Identities=11%  Similarity=-0.056  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--cH-H--HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHH
Q 009850          176 TRLLGNLGWALMQQNNYIEAEDAYRRALSIAPD--NN-K--MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHL  250 (524)
Q Consensus       176 ~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~--~~-~--~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~  250 (524)
                      .-+.+..|.+..+.|+..+|+..|.++-...|-  -. +  ...-+.++...|-|++-..-.+..               
T Consensus        94 vLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepL---------------  158 (221)
T COG4649          94 VLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPL---------------  158 (221)
T ss_pred             HHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhc---------------
Confidence            447788899999999999999999988775433  22 1  455677788888888766665531               


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhccc
Q 009850          251 KAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQ  292 (524)
Q Consensus       251 ~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~  292 (524)
                           +..-.|-...+.-.||..-++.|++..|...|..+-.
T Consensus       159 -----a~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         159 -----AGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             -----cCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence                 2223344456778889999999999999999988765

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=89.75  E-value=1.8  Score=42.11  Aligned_cols=65  Identities=15%  Similarity=0.170  Sum_probs=59.5

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q 009850           51 RAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQ  115 (524)
Q Consensus        51 ~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~  115 (524)
                      ++-..+.+.++++.|..+..+.+..+|.++.-+...|.+|.++|.+.-|+..++..++..|+++.
T Consensus       186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~  250 (269)
T COG2912         186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPI  250 (269)
T ss_pred             HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchH
Confidence            34557788999999999999999999999999999999999999999999999999999998863

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.72  E-value=3.5  Score=44.51  Aligned_cols=96  Identities=10%  Similarity=0.061  Sum_probs=74.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH----HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHH
Q 009850           85 DMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQ----ESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTA  160 (524)
Q Consensus        85 ~La~~~~~~g~~~eAi~~~~~al~~~p~~~~----~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a  160 (524)
                      +-|.-+++..+|..+++.|...+...|.+..    ......+..+|..+.+.|.|.+++..|-+.               
T Consensus       359 n~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~---------------  423 (872)
T KOG4814|consen  359 NTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEV---------------  423 (872)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh---------------
Confidence            3456667778899999999998888775422    456678888899999999999999998887               


Q ss_pred             HHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 009850          161 RSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIA  206 (524)
Q Consensus       161 ~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~  206 (524)
                                 +|.++-.....-.+....|.-++|+.+........
T Consensus       424 -----------d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~  458 (872)
T KOG4814|consen  424 -----------DRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSE  458 (872)
T ss_pred             -----------ccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhh
Confidence                       77777777777777777888888888887776543

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=89.67  E-value=2.7  Score=36.38  Aligned_cols=62  Identities=15%  Similarity=0.219  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHHHHcCC---HHHHHHHHHHHHh-hCCCcHH--HHHHHHHHHHcCCHHHHHHHHHHhcc
Q 009850          176 TRLLGNLGWALMQQNN---YIEAEDAYRRALS-IAPDNNK--MCNLGICLMKQGRIGEAKETLRRVKP  237 (524)
Q Consensus       176 ~~a~~~Lg~~~~~~g~---~~eAi~~~~~Al~-l~P~~~~--~~~Lg~~~~~~G~~~eA~~~~~~a~~  237 (524)
                      ....+++++++....+   ..+.+..++..++ -.|+...  .+.|+..+.++|+|+.++.+.+..+.
T Consensus        32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~   99 (149)
T KOG3364|consen   32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE   99 (149)
T ss_pred             HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence            5678999999988764   5678999999997 4555444  67899999999999999999994433

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=89.64  E-value=1.2  Score=29.16  Aligned_cols=33  Identities=24%  Similarity=0.274  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHH--HHHHHhhCCCc
Q 009850          177 RLLGNLGWALMQQNNYIEAEDA--YRRALSIAPDN  209 (524)
Q Consensus       177 ~a~~~Lg~~~~~~g~~~eAi~~--~~~Al~l~P~~  209 (524)
                      +.++.+|..+..+|++++|+..  |+-+..+++.|
T Consensus         2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence            4678889999999999999999  54777777654

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=89.58  E-value=0.43  Score=28.56  Aligned_cols=23  Identities=35%  Similarity=0.219  Sum_probs=16.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHH
Q 009850          178 LLGNLGWALMQQNNYIEAEDAYR  200 (524)
Q Consensus       178 a~~~Lg~~~~~~g~~~eAi~~~~  200 (524)
                      +++++|.++...|++++|...++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHh
Confidence            55667777777777777776654

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=89.39  E-value=14  Score=35.87  Aligned_cols=132  Identities=8%  Similarity=0.001  Sum_probs=100.6

Q ss_pred             cCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcC-ChHHHHH
Q 009850           59 DKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCG-RLDDQIA  137 (524)
Q Consensus        59 ~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g-~~~eA~~  137 (524)
                      ..+|.++..+|+.++..+..                 -..|+.+.+.++.++|.+-  .+|...-.++..++ +..+-++
T Consensus        39 te~fr~~m~YfRAI~~~~E~-----------------S~RAl~LT~d~i~lNpAnY--TVW~yRr~iL~~l~~dL~~El~   99 (318)
T KOG0530|consen   39 TEDFRDVMDYFRAIIAKNEK-----------------SPRALQLTEDAIRLNPANY--TVWQYRRVILRHLMSDLNKELE   99 (318)
T ss_pred             chhHHHHHHHHHHHHhcccc-----------------CHHHHHHHHHHHHhCcccc--hHHHHHHHHHHHhHHHHHHHHH
Confidence            45677777777776665544                 4566777778889999774  44444444444433 4566677


Q ss_pred             HHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHH-HHHHHHHHHHhhCCCcHH-HHHH
Q 009850          138 LLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYI-EAEDAYRRALSIAPDNNK-MCNL  215 (524)
Q Consensus       138 ~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~-eAi~~~~~Al~l~P~~~~-~~~L  215 (524)
                      ++.+.++-                          +|.+-.+|...-.+....|++. .-++..+.++..+.++-. |..+
T Consensus       100 ~l~eI~e~--------------------------npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshR  153 (318)
T KOG0530|consen  100 YLDEIIED--------------------------NPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHR  153 (318)
T ss_pred             HHHHHHHh--------------------------CccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHH
Confidence            77777766                          8999999999999999999988 889999999998888877 8888


Q ss_pred             HHHHHHcCCHHHHHHHHHHh
Q 009850          216 GICLMKQGRIGEAKETLRRV  235 (524)
Q Consensus       216 g~~~~~~G~~~eA~~~~~~a  235 (524)
                      -.|....+.++.-+.+..+.
T Consensus       154 qW~~r~F~~~~~EL~y~~~L  173 (318)
T KOG0530|consen  154 QWVLRFFKDYEDELAYADEL  173 (318)
T ss_pred             HHHHHHHhhHHHHHHHHHHH
Confidence            88988888899888887754

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=88.57  E-value=9.2  Score=40.50  Aligned_cols=102  Identities=16%  Similarity=0.144  Sum_probs=63.8

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHH
Q 009850           90 MKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQV  169 (524)
Q Consensus        90 ~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~  169 (524)
                      ....|+++++....+.. .+-|.-+ ...+...+..+.+.|..+.|+.+.                              
T Consensus       271 av~~~d~~~v~~~i~~~-~ll~~i~-~~~~~~i~~fL~~~G~~e~AL~~~------------------------------  318 (443)
T PF04053_consen  271 AVLRGDFEEVLRMIAAS-NLLPNIP-KDQGQSIARFLEKKGYPELALQFV------------------------------  318 (443)
T ss_dssp             HHHTT-HHH-----HHH-HTGGG---HHHHHHHHHHHHHTT-HHHHHHHS------------------------------
T ss_pred             HHHcCChhhhhhhhhhh-hhcccCC-hhHHHHHHHHHHHCCCHHHHHhhc------------------------------
Confidence            34567888877776521 1222221 134566677778888887776643                              


Q ss_pred             hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHh
Q 009850          170 SVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRV  235 (524)
Q Consensus       170 ~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a  235 (524)
                          .+++..+.|+.   +.|+.+.|.+..+     .-+++. |-.||...+.+|+++-|..+|+++
T Consensus       319 ----~D~~~rFeLAl---~lg~L~~A~~~a~-----~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~  373 (443)
T PF04053_consen  319 ----TDPDHRFELAL---QLGNLDIALEIAK-----ELDDPEKWKQLGDEALRQGNIELAEECYQKA  373 (443)
T ss_dssp             ----S-HHHHHHHHH---HCT-HHHHHHHCC-----CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred             ----CChHHHhHHHH---hcCCHHHHHHHHH-----hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence                34456666654   8899999988643     334566 999999999999999999999986

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=88.17  E-value=0.86  Score=30.23  Aligned_cols=30  Identities=27%  Similarity=0.439  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 009850          177 RLLGNLGWALMQQNNYIEAEDAYRRALSIA  206 (524)
Q Consensus       177 ~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~  206 (524)
                      +++..||.+-+..++|++|+..|++++++.
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~   31 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQ   31 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            467889999999999999999999998764

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=88.07  E-value=2.7  Score=41.37  Aligned_cols=81  Identities=17%  Similarity=0.095  Sum_probs=67.4

Q ss_pred             ChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 009850           61 DPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLK  140 (524)
Q Consensus        61 ~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~  140 (524)
                      ++..-+...++.++.  ....++..++..+...|+++.++..+++.+..+|-+-  ..+..+...|...|+...|+..|+
T Consensus       136 ~f~~WV~~~R~~l~e--~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E--~~~~~lm~~y~~~g~~~~ai~~y~  211 (280)
T COG3629         136 RFDEWVLEQRRALEE--LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDE--PAYLRLMEAYLVNGRQSAAIRAYR  211 (280)
T ss_pred             hHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccch--HHHHHHHHHHHHcCCchHHHHHHH
Confidence            366666666666553  4567889999999999999999999999999999775  577778888999999999999999


Q ss_pred             HHHHH
Q 009850          141 HKLYL  145 (524)
Q Consensus       141 ~al~l  145 (524)
                      +.-..
T Consensus       212 ~l~~~  216 (280)
T COG3629         212 QLKKT  216 (280)
T ss_pred             HHHHH
Confidence            88764

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.34  E-value=30  Score=37.28  Aligned_cols=182  Identities=13%  Similarity=0.050  Sum_probs=109.3

Q ss_pred             cCCHHHHHHHHHHHHHhCCCc---------H-HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHH
Q 009850           93 QNRAEEAIEAIKSLRSRCSDQ---------A-QESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARS  162 (524)
Q Consensus        93 ~g~~~eAi~~~~~al~~~p~~---------~-~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~  162 (524)
                      ...|++|...|.-++...+.+         + +......++.+...+|+.+-|..+..++|-.....+.-.-....    
T Consensus       251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~s----  326 (665)
T KOG2422|consen  251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFS----  326 (665)
T ss_pred             chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccc----
Confidence            345889999999888876532         1 23555678889999999999999998887542111110000000    


Q ss_pred             HhHHHHHhcCCCcHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-cHH--HHHHHHHHHHcCCHHHHHHHHHHhc
Q 009850          163 QGKKFQVSVEQEATR---LLGNLGWALMQQNNYIEAEDAYRRALSIAPD-NNK--MCNLGICLMKQGRIGEAKETLRRVK  236 (524)
Q Consensus       163 ~~~~~~~~~~p~~~~---a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~--~~~Lg~~~~~~G~~~eA~~~~~~a~  236 (524)
                       +.+-.--+.|.+-.   +++..-..+.+.|-|.-|.++++-.++++|. ++.  .+.+-....+..+|+=-+..++...
T Consensus       327 -g~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e  405 (665)
T KOG2422|consen  327 -GNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPE  405 (665)
T ss_pred             -ccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence             00000001344432   2333344566789999999999999999999 666  4444444456666766666666431


Q ss_pred             ccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHhhcccCCCC
Q 009850          237 PAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSR---LFDAFLGSSSIWQPQPC  296 (524)
Q Consensus       237 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~---~~eAi~~~~~al~~~P~  296 (524)
                      .                ...+...|+++ .-..++..|.....   -..|...+.+|+..-|.
T Consensus       406 ~----------------~n~l~~~PN~~-yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~  451 (665)
T KOG2422|consen  406 N----------------MNKLSQLPNFG-YSLALARFFLRKNEEDDRQSALNALLQALKHHPL  451 (665)
T ss_pred             h----------------hccHhhcCCch-HHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence            1                03345556654 23445566665555   45677778888877773

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=87.28  E-value=4.1  Score=39.66  Aligned_cols=59  Identities=27%  Similarity=0.314  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHh
Q 009850          177 RLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRV  235 (524)
Q Consensus       177 ~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a  235 (524)
                      ....++=..+...++++.|..+-++.+.++|+++. +--.|.+|.++|-+.-|+..++..
T Consensus       182 rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~  241 (269)
T COG2912         182 RLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYF  241 (269)
T ss_pred             HHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHH
Confidence            45567777889999999999999999999999998 999999999999999999999943

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=87.12  E-value=0.93  Score=27.09  Aligned_cols=21  Identities=24%  Similarity=0.343  Sum_probs=10.9

Q ss_pred             HHHHHHHHHHcCChHHHHHHH
Q 009850           49 YVRAKNVQLVDKDPEKAIPLF   69 (524)
Q Consensus        49 ~~~lg~~~~~~g~~~~Ai~~~   69 (524)
                      ++.+|.++...|++++|...+
T Consensus         4 ~~~la~~~~~~G~~~eA~~~l   24 (26)
T PF07721_consen    4 RLALARALLAQGDPDEAERLL   24 (26)
T ss_pred             HHHHHHHHHHcCCHHHHHHHH
Confidence            444555555555555555544

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=87.06  E-value=3.4  Score=32.19  Aligned_cols=57  Identities=23%  Similarity=0.179  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-H---HHHHHHHHHcCCHHHHHHHHHH
Q 009850          178 LLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-M---CNLGICLMKQGRIGEAKETLRR  234 (524)
Q Consensus       178 a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~---~~Lg~~~~~~G~~~eA~~~~~~  234 (524)
                      -...-|.-++...+.++|+..++++++..++.+. +   ..+..+|...|++.+.+.+-.+
T Consensus         8 ~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~   68 (80)
T PF10579_consen    8 QQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ   68 (80)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445577778999999999999999999888777 4   4566778999999998887553

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=87.04  E-value=2.2  Score=27.92  Aligned_cols=21  Identities=29%  Similarity=0.279  Sum_probs=10.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHH
Q 009850           82 ALKDMAIVMKQQNRAEEAIEA  102 (524)
Q Consensus        82 a~~~La~~~~~~g~~~eAi~~  102 (524)
                      .++.+|..+..+|++++|+..
T Consensus         3 ~~y~~a~~~y~~~ky~~A~~~   23 (36)
T PF07720_consen    3 YLYGLAYNFYQKGKYDEAIHF   23 (36)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHH
Confidence            344555555555555555555

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=86.76  E-value=47  Score=35.36  Aligned_cols=171  Identities=15%  Similarity=0.092  Sum_probs=108.6

Q ss_pred             ChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 009850           61 DPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLK  140 (524)
Q Consensus        61 ~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~  140 (524)
                      .+.--..++.+++... ++--+++.++.||... ..++-....++.++.+=++.  .....|+..|.. ++-..+..+|.
T Consensus        81 k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDv--v~~ReLa~~yEk-ik~sk~a~~f~  155 (711)
T COG1747          81 KNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDV--VIGRELADKYEK-IKKSKAAEFFG  155 (711)
T ss_pred             HHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhH--HHHHHHHHHHHH-hchhhHHHHHH
Confidence            3344445566666654 3457788999999988 56777888889989888776  556677776665 88999999999


Q ss_pred             HHHHHhhc---cHh----------hhcccHHHHHHHhHHHHHhcCCCcHHHHHHHH-HHHHHcCCHHHHHHHHHHHHhhC
Q 009850          141 HKLYLIQQ---GLA----------FNGKRTKTARSQGKKFQVSVEQEATRLLGNLG-WALMQQNNYIEAEDAYRRALSIA  206 (524)
Q Consensus       141 ~al~l~~~---~~~----------~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg-~~~~~~g~~~eAi~~~~~Al~l~  206 (524)
                      +++...-.   ..+          +.+...+-.....+.++......-..+.+.-- .-|....+|.+|++.+...++.+
T Consensus       156 Ka~yrfI~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d  235 (711)
T COG1747         156 KALYRFIPRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHD  235 (711)
T ss_pred             HHHHHhcchhhhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhc
Confidence            98865311   000          11222233333334444333333344433333 44556679999999999999998


Q ss_pred             CCcHH-HHHHHHHHHH--------------------cCCHHHHHHHHHHhc
Q 009850          207 PDNNK-MCNLGICLMK--------------------QGRIGEAKETLRRVK  236 (524)
Q Consensus       207 P~~~~-~~~Lg~~~~~--------------------~G~~~eA~~~~~~a~  236 (524)
                      ..+.. .-++-.-+..                    -.++-+++..|+...
T Consensus       236 ~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m  286 (711)
T COG1747         236 EKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLM  286 (711)
T ss_pred             chhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHh
Confidence            88765 4444433333                    345677777777753

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=86.56  E-value=34  Score=33.45  Aligned_cols=203  Identities=9%  Similarity=0.015  Sum_probs=111.2

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHc-----CCCcHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhC----CCcHHH
Q 009850           47 TPYVRAKNVQLVDKDPEKAIPLFWAAINA-----GDRVDSALKDMAIVMKQQNRAE-EAIEAIKSLRSRC----SDQAQE  116 (524)
Q Consensus        47 ~~~~~lg~~~~~~g~~~~Ai~~~~~al~~-----~p~~~~a~~~La~~~~~~g~~~-eAi~~~~~al~~~----p~~~~~  116 (524)
                      +..+.=+..+++.|++.-|.++..-.++.     .+.+.+....++.++...+.-+ +=....+++++-.    +..+..
T Consensus        11 dLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp   90 (260)
T PF04190_consen   11 DLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDP   90 (260)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--H
T ss_pred             HHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCH
Confidence            34566677788888888887766555543     3455566678888888776433 2333444444433    223445


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHH-HHHHcCCHHHH
Q 009850          117 SLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGW-ALMQQNNYIEA  195 (524)
Q Consensus       117 ~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~-~~~~~g~~~eA  195 (524)
                      .++..+|..|.+.|++.+|..+|-..-.-.  ...        .............|...+.+...+. .|...++...|
T Consensus        91 ~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~--~~~--------~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A  160 (260)
T PF04190_consen   91 ELHHLLAEKLWKEGNYYEAERHFLLGTDPS--AFA--------YVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDA  160 (260)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHTS-HHH--HHH--------HHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHH
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHhcCChh--HHH--------HHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHH
Confidence            899999999999999999998885432210  000        0001111112235777777777765 46677999999


Q ss_pred             HHHHHHHHhh----CCC-----------cHH--HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHH
Q 009850          196 EDAYRRALSI----APD-----------NNK--MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQ  258 (524)
Q Consensus       196 i~~~~~Al~l----~P~-----------~~~--~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~  258 (524)
                      ...+..-++.    .|+           .+.  +..+-..-++.++.    ..|..              ..+.|+..++
T Consensus       161 ~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~e~~~~----~~F~~--------------L~~~Y~~~L~  222 (260)
T PF04190_consen  161 NELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTCERDNL----PLFKK--------------LCEKYKPSLK  222 (260)
T ss_dssp             HHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHHHHHHHHHT-H----HHHHH--------------HHHHTHH---
T ss_pred             HHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHHHHHHHhcCcH----HHHHH--------------HHHHhCcccc
Confidence            9888776665    332           233  22333333444443    34443              2334556677


Q ss_pred             hCCCCHHHHHHHHHHHHHc
Q 009850          259 MLKDLESEMMNKGGDRVEQ  277 (524)
Q Consensus       259 ~~p~~~~a~~~lg~~~~~~  277 (524)
                      .+|........+|..|...
T Consensus       223 rd~~~~~~L~~IG~~yFgi  241 (260)
T PF04190_consen  223 RDPSFKEYLDKIGQLYFGI  241 (260)
T ss_dssp             HHHHTHHHHHHHHHHHH--
T ss_pred             ccHHHHHHHHHHHHHHCCC
Confidence            7788888888899888764

; PDB: 3LKU_E 2WPV_G.

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=86.36  E-value=46  Score=34.86  Aligned_cols=165  Identities=9%  Similarity=0.054  Sum_probs=84.2

Q ss_pred             HHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhh
Q 009850           68 LFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQ  147 (524)
Q Consensus        68 ~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~  147 (524)
                      .+.+++..-+-.++.|+....-+...++-+.|+...++++...|.     +...++..|....+-++-..+|+++++-..
T Consensus       290 ~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps-----L~~~lse~yel~nd~e~v~~~fdk~~q~L~  364 (660)
T COG5107         290 IHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS-----LTMFLSEYYELVNDEEAVYGCFDKCTQDLK  364 (660)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc-----hheeHHHHHhhcccHHHHhhhHHHHHHHHH
Confidence            345566666666777777777777777777777777777666664     223444455445555555555555543210


Q ss_pred             c-------------------------------cHhh--------hcccHHHHHHH-hHHHHHhcCCCcHHHHHHHHHHHH
Q 009850          148 Q-------------------------------GLAF--------NGKRTKTARSQ-GKKFQVSVEQEATRLLGNLGWALM  187 (524)
Q Consensus       148 ~-------------------------------~~~~--------~~~~~~~a~~~-~~~~~~~~~p~~~~a~~~Lg~~~~  187 (524)
                      .                               .+.+        .....+++... .++-...+-..+.-+++.+- -+.
T Consensus       365 r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~-E~~  443 (660)
T COG5107         365 RKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFI-EYY  443 (660)
T ss_pred             HHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHH-HHH
Confidence            0                               0000        00001111110 11110111111111111111 234


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhccc
Q 009850          188 QQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPA  238 (524)
Q Consensus       188 ~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~  238 (524)
                      ..|++.-|...|+-.+...|+.+. -...-..+...++-..|...|+.+.+.
T Consensus       444 ~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r  495 (660)
T COG5107         444 ATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVER  495 (660)
T ss_pred             hcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH
Confidence            567777777777777777777777 333444556777777777777765443

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=85.72  E-value=1.6  Score=28.99  Aligned_cols=28  Identities=21%  Similarity=0.233  Sum_probs=18.0

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 009850           48 PYVRAKNVQLVDKDPEKAIPLFWAAINA   75 (524)
Q Consensus        48 ~~~~lg~~~~~~g~~~~Ai~~~~~al~~   75 (524)
                      .|..||.+.+..++|++|+.-|.+++++
T Consensus         3 v~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    3 VYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            4566666666666666666666666654

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=85.50  E-value=51  Score=34.58  Aligned_cols=68  Identities=12%  Similarity=-0.006  Sum_probs=44.9

Q ss_pred             CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcH-------------HHH--HHHHHHHHHcCCHHHHHHHHHHH
Q 009850           42 VPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVD-------------SAL--KDMAIVMKQQNRAEEAIEAIKSL  106 (524)
Q Consensus        42 ~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~-------------~a~--~~La~~~~~~g~~~eAi~~~~~a  106 (524)
                      .|.++-..+-.|...++++.+.+|++.+..--..-.+..             +.+  ...+.++...|++.++...+++.
T Consensus        75 ~~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i  154 (549)
T PF07079_consen   75 FGKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRI  154 (549)
T ss_pred             cCCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence            455544455668888889999998888766554411111             111  23578888899999998888886


Q ss_pred             HHh
Q 009850          107 RSR  109 (524)
Q Consensus       107 l~~  109 (524)
                      +..
T Consensus       155 ~~~  157 (549)
T PF07079_consen  155 IER  157 (549)
T ss_pred             HHH
Confidence            654

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=85.12  E-value=24  Score=33.32  Aligned_cols=60  Identities=13%  Similarity=0.062  Sum_probs=53.3

Q ss_pred             HHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 009850           55 VQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQA  114 (524)
Q Consensus        55 ~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~  114 (524)
                      .+++.+...+|+...+.-++.+|.+......+-.+|+-.|+|++|...++-+-.+.|.+.
T Consensus        10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t   69 (273)
T COG4455          10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT   69 (273)
T ss_pred             HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence            457888899999999999999999999999999999999999999999999988888763

>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]

Probab=84.83  E-value=20  Score=36.05  Aligned_cols=185  Identities=14%  Similarity=0.032  Sum_probs=103.0

Q ss_pred             ChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 009850           61 DPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLK  140 (524)
Q Consensus        61 ~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~  140 (524)
                      -.++|+.+-+-...+-|..++++..++..+++..+...=...--..+-+...+.  .+|        ..+-++++...+.
T Consensus       211 Lc~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr--~lW--------~r~lI~eg~all~  280 (415)
T COG4941         211 LCDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDR--SLW--------DRALIDEGLALLD  280 (415)
T ss_pred             HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccch--hhh--------hHHHHHHHHHHHH
Confidence            346777777777777788788777777665543221110000000011111111  222        2234567777777


Q ss_pred             HHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHhhCCCcHHHHHH
Q 009850          141 HKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQ-----QNNYIEAEDAYRRALSIAPDNNKMCNL  215 (524)
Q Consensus       141 ~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~-----~g~~~eAi~~~~~Al~l~P~~~~~~~L  215 (524)
                      +++...                         .|+.-...-.++.++..     .-+|..=...|.-...+.|+-..-.|.
T Consensus       281 rA~~~~-------------------------~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apSPvV~LNR  335 (415)
T COG4941         281 RALASR-------------------------RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPSPVVTLNR  335 (415)
T ss_pred             HHHHcC-------------------------CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCCCeEeehH
Confidence            776652                         23333333344444433     236766667777777777766556666


Q ss_pred             HHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCC
Q 009850          216 GICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQP  295 (524)
Q Consensus       216 g~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P  295 (524)
                      +.+..+..-.+.++...+.....                   ....++.-.|-..|..+.++|+..+|...|.+++.+.+
T Consensus       336 AVAla~~~Gp~agLa~ve~L~~~-------------------~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~  396 (415)
T COG4941         336 AVALAMREGPAAGLAMVEALLAR-------------------PRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALAR  396 (415)
T ss_pred             HHHHHHhhhHHhHHHHHHHhhcc-------------------cccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcC
Confidence            77666665566666666533111                   01222333566678888888888888888888887766


Q ss_pred             CCCC
Q 009850          296 CKDH  299 (524)
Q Consensus       296 ~~~~  299 (524)
                      +..+
T Consensus       397 ~~ae  400 (415)
T COG4941         397 NAAE  400 (415)
T ss_pred             ChHH
Confidence            5443

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=84.51  E-value=38  Score=35.07  Aligned_cols=60  Identities=17%  Similarity=0.095  Sum_probs=40.5

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHcCCCcHH--HHHHH--HHHHHHcCCHHHHHHHHHHHHHh
Q 009850           50 VRAKNVQLVDKDPEKAIPLFWAAINAGDRVDS--ALKDM--AIVMKQQNRAEEAIEAIKSLRSR  109 (524)
Q Consensus        50 ~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~--a~~~L--a~~~~~~g~~~eAi~~~~~al~~  109 (524)
                      ...+...+..++|..|...|......-|....  .+..+  |.-+...-++.+|.+.++..+..
T Consensus       135 ~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~  198 (379)
T PF09670_consen  135 WRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR  198 (379)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            45566778888888888888888875333332  33333  44455667788888888877665

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=84.48  E-value=2.3  Score=48.88  Aligned_cols=104  Identities=16%  Similarity=0.120  Sum_probs=72.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCcHH----HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHH
Q 009850          182 LGWALMQQNNYIEAEDAYRRALSIAPDNNK----MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQ  257 (524)
Q Consensus       182 Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~----~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al  257 (524)
                      ...++...+.|++|+..|++.-...|....    .+..|..+..+            +....  ++..+++|+..|++ +
T Consensus       481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~--~~~~~~~~~~~~~~-~  545 (932)
T PRK13184        481 VPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEK------------ASEQG--DPRDFTQALSEFSY-L  545 (932)
T ss_pred             CcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHH------------HHhcC--ChHHHHHHHHHHHH-h
Confidence            456777888999999999999999988755    45555555433            21111  11233334433433 2


Q ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCc
Q 009850          258 QMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHI  300 (524)
Q Consensus       258 ~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~  300 (524)
                      ...|.-+--|...+.+|..+|+++|-+.+|..+++..|.++..
T Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  588 (932)
T PRK13184        546 HGGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEI  588 (932)
T ss_pred             cCCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCcc
Confidence            3345555567788889999999999999999999999998873

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=84.37  E-value=47  Score=38.60  Aligned_cols=39  Identities=13%  Similarity=-0.023  Sum_probs=26.9

Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q 009850          173 QEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK  211 (524)
Q Consensus       173 p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~  211 (524)
                      |..+--|...+.+|.++|+|++-+++|.-|++..|+++.
T Consensus       549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  587 (932)
T PRK13184        549 VGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPE  587 (932)
T ss_pred             CCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCc
Confidence            444555666677777777777777777777777776644

>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]

Probab=83.80  E-value=51  Score=33.13  Aligned_cols=115  Identities=17%  Similarity=0.131  Sum_probs=72.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHh
Q 009850           85 DMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQG  164 (524)
Q Consensus        85 ~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~  164 (524)
                      .+-....+..+..+-++.-..+++++|.-+  .++..++.-  ..--..+|..+|+++++.                   
T Consensus       189 eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA--~AyvLLAEE--Ea~Ti~~AE~l~k~ALka-------------------  245 (556)
T KOG3807|consen  189 EIMQKAWRERNPPARIKAAYQALEINNECA--TAYVLLAEE--EATTIVDAERLFKQALKA-------------------  245 (556)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHHhcCchhh--hHHHhhhhh--hhhhHHHHHHHHHHHHHH-------------------
Confidence            333444555666777888888999998775  455555533  445678899999999876                   


Q ss_pred             HHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-H--HHHHHHHHHcCCHHHHHHHHHHhccccc
Q 009850          165 KKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-M--CNLGICLMKQGRIGEAKETLRRVKPAVA  240 (524)
Q Consensus       165 ~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~--~~Lg~~~~~~G~~~eA~~~~~~a~~~~~  240 (524)
                                 .+..++..+.....|...+|..      +.+ .+.. |  ..|+.|..++|+..+|++.++......+
T Consensus       246 -----------~e~~yr~sqq~qh~~~~~da~~------rRD-tnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~p  306 (556)
T KOG3807|consen  246 -----------GETIYRQSQQCQHQSPQHEAQL------RRD-TNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFP  306 (556)
T ss_pred             -----------HHHHHhhHHHHhhhccchhhhh------hcc-cchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence                       1122333333333443333322      222 2333 3  4689999999999999999997655444

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=83.65  E-value=48  Score=32.69  Aligned_cols=49  Identities=14%  Similarity=0.150  Sum_probs=37.7

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHcCC--------CcHHHHHHHHHHHHHcCCHHH
Q 009850           50 VRAKNVQLVDKDPEKAIPLFWAAINAGD--------RVDSALKDMAIVMKQQNRAEE   98 (524)
Q Consensus        50 ~~lg~~~~~~g~~~~Ai~~~~~al~~~p--------~~~~a~~~La~~~~~~g~~~e   98 (524)
                      ..+++-....+++++|+..|.+.+....        +...+...++.+|...|++..
T Consensus         7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~   63 (421)
T COG5159           7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCS   63 (421)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcch
Confidence            4677778889999999999999987632        223457788999999988653

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=83.06  E-value=7.1  Score=40.18  Aligned_cols=60  Identities=17%  Similarity=0.095  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 009850          118 LDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAED  197 (524)
Q Consensus       118 l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~  197 (524)
                      +--.+..||.++++.+-|+....+.+.+                          +|....-+...+.++..+.+|.+|..
T Consensus       230 Ietklv~CYL~~rkpdlALnh~hrsI~l--------------------------nP~~frnHLrqAavfR~LeRy~eAar  283 (569)
T PF15015_consen  230 IETKLVTCYLRMRKPDLALNHSHRSINL--------------------------NPSYFRNHLRQAAVFRRLERYSEAAR  283 (569)
T ss_pred             HHHHHHHhhhhcCCCchHHHHHhhhhhc--------------------------CcchhhHHHHHHHHHHHHHHHHHHHH
Confidence            3346778899999999999999999888                          89998889999999999999999988


Q ss_pred             HHHHHH
Q 009850          198 AYRRAL  203 (524)
Q Consensus       198 ~~~~Al  203 (524)
                      .+--+.
T Consensus       284 Samia~  289 (569)
T PF15015_consen  284 SAMIAD  289 (569)
T ss_pred             HHHHHH
Confidence            776554

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=81.77  E-value=9.2  Score=35.61  Aligned_cols=81  Identities=9%  Similarity=0.080  Sum_probs=58.6

Q ss_pred             HHHcCChHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHHHcCCh
Q 009850           56 QLVDKDPEKAIPLFWAAINA-GDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQ--AQESLDNILLDLYKRCGRL  132 (524)
Q Consensus        56 ~~~~g~~~~Ai~~~~~al~~-~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~--~~~~l~~~lg~~~~~~g~~  132 (524)
                      +...-.-++|...|-++-.. .=++++..+.||..|. ..+.++|+.++.+++++.+.+  ....+...|+.+|...|++
T Consensus       116 ~Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~  194 (203)
T PF11207_consen  116 HWSRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY  194 (203)
T ss_pred             HhhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence            34443446677766555332 2256788888887666 578999999999999987643  3347888999999999999


Q ss_pred             HHHHH
Q 009850          133 DDQIA  137 (524)
Q Consensus       133 ~eA~~  137 (524)
                      +.|--
T Consensus       195 e~AYi  199 (203)
T PF11207_consen  195 EQAYI  199 (203)
T ss_pred             hhhhh
Confidence            98853

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=81.37  E-value=42  Score=37.77  Aligned_cols=57  Identities=14%  Similarity=0.103  Sum_probs=36.3

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 009850           87 AIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYL  145 (524)
Q Consensus        87 a~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l  145 (524)
                      -.++.+..-|+-|+.+-+.- .. +.+....++..+|.-++..|++++|...|-+++..
T Consensus       341 L~iL~kK~ly~~Ai~LAk~~-~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~  397 (933)
T KOG2114|consen  341 LDILFKKNLYKVAINLAKSQ-HL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF  397 (933)
T ss_pred             HHHHHHhhhHHHHHHHHHhc-CC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence            34556666677777665431 11 22222466677788888888888888888877754

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=81.17  E-value=29  Score=29.94  Aligned_cols=49  Identities=12%  Similarity=0.128  Sum_probs=38.0

Q ss_pred             HHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 009850           55 VQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIK  104 (524)
Q Consensus        55 ~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~  104 (524)
                      .+...+.+...+.+++..+..++.++..+..+..+|... +..+.+..++
T Consensus        16 ~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~   64 (140)
T smart00299       16 LFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLD   64 (140)
T ss_pred             HHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHH
Confidence            344567899999999999998888888888888888765 3456666666

>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]

Probab=80.92  E-value=54  Score=31.48  Aligned_cols=44  Identities=20%  Similarity=0.214  Sum_probs=31.4

Q ss_pred             HHHHHHHHHHHHh-----hCCCcHH----HHHHHHHH-HHcCCHHHHHHHHHHh
Q 009850          192 YIEAEDAYRRALS-----IAPDNNK----MCNLGICL-MKQGRIGEAKETLRRV  235 (524)
Q Consensus       192 ~~eAi~~~~~Al~-----l~P~~~~----~~~Lg~~~-~~~G~~~eA~~~~~~a  235 (524)
                      .+.|...|++|+.     +.|.+|.    ..|.+..| .-+|+.++|+...+++
T Consensus       142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~a  195 (236)
T PF00244_consen  142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQA  195 (236)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHH
T ss_pred             HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            4678888888876     4677877    34555555 4489999999988875

There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=80.36  E-value=97  Score=34.05  Aligned_cols=83  Identities=13%  Similarity=0.082  Sum_probs=43.6

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHH------HHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHH
Q 009850           50 VRAKNVQLVDKDPEKAIPLFWAA------INAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRS--RCSDQAQESLDNI  121 (524)
Q Consensus        50 ~~lg~~~~~~g~~~~Ai~~~~~a------l~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~--~~p~~~~~~l~~~  121 (524)
                      ..+|.++.-.|.|.+|..+|.+.      ++...+  --.+.++.-+...|.-++-..+.++-..  .+-..+     ..
T Consensus       636 iLlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTD--lRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~keP-----ka  708 (1081)
T KOG1538|consen  636 LLLADVFAYQGKFHEAAKLFKRSGHENRALEMYTD--LRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEP-----KA  708 (1081)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHH--HHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCc-----HH
Confidence            35667777788888888877553      111111  1134455555555655554444443211  111222     12


Q ss_pred             HHHHHHHcCChHHHHHHH
Q 009850          122 LLDLYKRCGRLDDQIALL  139 (524)
Q Consensus       122 lg~~~~~~g~~~eA~~~~  139 (524)
                      -+.++...|+.++|+...
T Consensus       709 AAEmLiSaGe~~KAi~i~  726 (1081)
T KOG1538|consen  709 AAEMLISAGEHVKAIEIC  726 (1081)
T ss_pred             HHHHhhcccchhhhhhhh
Confidence            345566778888877643

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=80.34  E-value=6.1  Score=38.56  Aligned_cols=41  Identities=29%  Similarity=0.322  Sum_probs=35.0

Q ss_pred             HHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHh
Q 009850          195 AEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRV  235 (524)
Q Consensus       195 Ai~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a  235 (524)
                      |+.+|.+|+.+.|++.. |+.+|.++...|+.-.|+-+|-++
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rs   42 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRS   42 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHH
Confidence            68899999999999988 999999999999999999888865

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	524
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	2e-14
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	9e-14
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	9e-09
2kat_A	115	Uncharacterized protein; NESG, structure, structur	1e-13
2kat_A	115	Uncharacterized protein; NESG, structure, structur	3e-07
2kat_A	115	Uncharacterized protein; NESG, structure, structur	3e-05
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	2e-12
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	6e-06
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	2e-12
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	4e-08
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	5e-12
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	3e-07
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	7e-12
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	9e-09
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	1e-08
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	7e-12
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	7e-12
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-11
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-11
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	6e-11
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-10
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	9e-09
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	7e-08
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	8e-12
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	3e-10
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	1e-07
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-07
3k9i_A	117	BH0479 protein; putative protein binding protein,	1e-11
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-11
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-09
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	4e-08
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	6e-08
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	2e-11
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	5e-07
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	2e-11
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	9e-06
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	2e-11
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	2e-08
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	4e-11
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	9e-11
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	4e-08
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-07
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	4e-05
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	4e-11
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	2e-10
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	1e-09
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	6e-11
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-10
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	4e-09
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-06
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	1e-10
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	1e-09
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	1e-08
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	1e-10
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	7e-08
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	1e-07
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-10
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	7e-10
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	9e-06
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-04
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	6e-04
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-10
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-09
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-09
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-08
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-07
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	5e-07
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-10
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-09
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-06
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	9e-04
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	3e-10
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	6e-06
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	3e-10
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	7e-09
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	2e-04
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	5e-10
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	8e-10
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	2e-09
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	3e-09
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	2e-04
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	7e-10
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	4e-08
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-07
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-07
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-06
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	2e-09
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	3e-07
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	4e-07
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	2e-09
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	3e-09
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	8e-08
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-09
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	7e-09
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	4e-08
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-07
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-06
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	5e-06
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	2e-09
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	5e-09
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	1e-08
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	4e-05
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	4e-09
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	1e-07
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	5e-09
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	6e-06
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	3e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-08
4g1t_A	472	Interferon-induced protein with tetratricopeptide	4e-08
4g1t_A	472	Interferon-induced protein with tetratricopeptide	1e-06
4g1t_A	472	Interferon-induced protein with tetratricopeptide	1e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	7e-04
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	2e-08
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-08
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-08
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-07
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	9e-07
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-04
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	3e-08
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	3e-08
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	2e-04
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	3e-08
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	6e-08
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	3e-07
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	6e-06
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	3e-05
3u4t_A	272	TPR repeat-containing protein; structural genomics	6e-08
3u4t_A	272	TPR repeat-containing protein; structural genomics	7e-06
3u4t_A	272	TPR repeat-containing protein; structural genomics	4e-05
2gw1_A	514	Mitochondrial precursor proteins import receptor;	8e-08
2gw1_A	514	Mitochondrial precursor proteins import receptor;	9e-07
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-06
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-05
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-05
2gw1_A	514	Mitochondrial precursor proteins import receptor;	6e-05
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	1e-07
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	2e-07
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	2e-07
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	4e-06
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	2e-07
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	9e-07
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	3e-04
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	3e-07
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	6e-07
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	2e-06
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	1e-05
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	1e-05
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	1e-05
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	2e-06
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	2e-06
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	5e-06
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	1e-05
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	4e-06
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	4e-06
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	5e-06
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	7e-04
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	6e-06
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	3e-05
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	5e-04
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	7e-06
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	9e-06
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	3e-05
2l6j_A	111	TPR repeat-containing protein associated with HSP;	1e-05
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	1e-05
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	1e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	9e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-04
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	5e-05
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	7e-05
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	2e-04
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	3e-04
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	4e-04

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 74.9 bits (184), Expect = 2e-14
 Identities = 31/191 (16%), Positives = 50/191 (26%), Gaps = 29/191 (15%)

Query: 61  DPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDN 120
           D  + +    AA+    +   A   +A              A++   +       E++  
Sbjct: 4   DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHP-EAVAR 62

Query: 121 ILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLG 180
            L  +     R  +   LL       QQ                         E   +  
Sbjct: 63  -LGRVRWTQQRHAEAAVLL-------QQASDAA-------------------PEHPGIAL 95

Query: 181 NLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAV 239
            LG AL        A  AY RA  + P+       L     +            +V+ AV
Sbjct: 96  WLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155

Query: 240 ADGPRGVDSHL 250
           A G   V+   
Sbjct: 156 AQGVGAVEPFA 166

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 67.5 bits (165), Expect = 9e-14
 Identities = 15/87 (17%), Positives = 29/87 (33%), Gaps = 5/87 (5%)

Query: 181 NLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAV 239
            LG        Y +A  +Y     +  +  +   +   C ++ G +  A+      +   
Sbjct: 57  GLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALA 116

Query: 240 ADGPRGVDSHLKAYERAQQMLKDLESE 266
           A  P     H     RA  ML+ + + 
Sbjct: 117 AAQPA----HEALAARAGAMLEAVTAR 139

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 53.2 bits (128), Expect = 9e-09
 Identities = 17/106 (16%), Positives = 33/106 (31%), Gaps = 7/106 (6%)

Query: 162 SQGKKFQ--VSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGIC 218
           S G        + ++    L  LG+   Q   + +A+  ++    +   + +    LG C
Sbjct: 2   SDGGTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGAC 61

Query: 219 LMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLE 264
               G   +A ++                    A E     L DL+
Sbjct: 62  RQSLGLYEQALQSYSY---GALMDINEPRFPFHAAE-CHLQLGDLD 103

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 66.6 bits (163), Expect = 1e-13
 Identities = 19/87 (21%), Positives = 27/87 (31%), Gaps = 6/87 (6%)

Query: 181 NLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAV 239
            LG    +   +  A    R AL   P  +     LG  L  QG    A++        +
Sbjct: 24  TLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWES---GL 80

Query: 240 ADGPRGVDSHLKAYERAQQMLKDLESE 266
           A      D      +  Q  L+ L  E
Sbjct: 81  AAAQSRGDQQ--VVKELQVFLRRLARE 105

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 48.5 bits (116), Expect = 3e-07
 Identities = 11/53 (20%), Positives = 17/53 (32%), Gaps = 3/53 (5%)

Query: 181 NLGWALMQQNNYIEAEDAYRRALSIAPDNNKM---CNLGICLMKQGRIGEAKE 230
            LG  L  Q +   A  A+   L+ A           L + L +  R    + 
Sbjct: 58  WLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAREDALEH 110

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 12/71 (16%), Positives = 23/71 (32%), Gaps = 8/71 (11%)

Query: 194 EAEDAYRRALSIAPDNNKM-CNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKA 252
              +     L+   DN  +   LG    +  +   A   LR    A+   P     +  A
Sbjct: 3   AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRA---ALDFDPT----YSVA 55

Query: 253 YERAQQMLKDL 263
           ++   + L+  
Sbjct: 56  WKWLGKTLQGQ 66

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 62.7 bits (153), Expect = 2e-12
 Identities = 12/86 (13%), Positives = 23/86 (26%), Gaps = 6/86 (6%)

Query: 181 NLGWALMQQNNYIEAEDAYRRALSIAPDNNKM-CNLGICLMKQGRIGEAKETLRRVKPAV 239
            L    ++ +N   A   +   +   PD      +LG    +  R  +A +T  +    +
Sbjct: 12  ALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQ---GI 68

Query: 240 ADGPRGVDSHLKAYERAQQMLKDLES 265
                            Q      E 
Sbjct: 69  EVAREEGTQK--DLSELQDAKLKAEG 92

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 44.2 bits (105), Expect = 6e-06
 Identities = 8/51 (15%), Positives = 18/51 (35%), Gaps = 3/51 (5%)

Query: 181 NLGWALMQQNNYIEAEDAYRRALSIAPDNNKM---CNLGICLMKQGRIGEA 228
           +LG    + +   +A D Y + + +A +         L    +K   +   
Sbjct: 46  HLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQDAKLKAEGLEHH 96

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 68.3 bits (166), Expect = 2e-12
 Identities = 36/236 (15%), Positives = 74/236 (31%), Gaps = 16/236 (6%)

Query: 82  ALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKH 141
           +L ++A + ++Q   EEA+   +       + A     + L  + ++ G+L + +   K 
Sbjct: 11  SLNNLANIKREQGNIEEAVRLYRKALEVFPEFAA--AHSNLASVLQQQGKLQEALMHYKE 68

Query: 142 KLYLIQQGLAFNGKRTKTARSQGKKFQVSVE--QEATRL-------LGNLGWALMQQNNY 192
            + +             T +      Q +++    A ++         NL        N 
Sbjct: 69  AIRISPTFADAYSNMGNTLKEMQD-VQGALQCYTRAIQINPAFADAHSNLASIHKDSGNI 127

Query: 193 IEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLK 251
            EA  +YR AL + PD     CNL  CL       +  E +++    V+     ++ +  
Sbjct: 128 PEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKK---LVSIVADQLEKNRL 184

Query: 252 AYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTTNAI 307
                   +    S    K       +   D            P    +      +
Sbjct: 185 PSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRLRV 240

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 54.8 bits (131), Expect = 4e-08
 Identities = 23/184 (12%), Positives = 59/184 (32%), Gaps = 12/184 (6%)

Query: 60  KDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLD 119
            + E+A+ L+  A+       +A  ++A V++QQ + +EA+   K         A     
Sbjct: 23  GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD--AY 80

Query: 120 NILLDLYKRCGRLDDQIALLK--------HKLYLIQQGLAF-NGKRTKTARSQGKKFQVS 170
           + + +  K    +   +                         +      A +  +   + 
Sbjct: 81  SNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRT-ALK 139

Query: 171 VEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKE 230
           ++ +      NL   L    ++ + ++  ++ +SI  D  +   L         +     
Sbjct: 140 LKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVHPHHSMLYPLSH 199

Query: 231 TLRR 234
             R+
Sbjct: 200 GFRK 203

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 62.9 bits (153), Expect = 5e-12
 Identities = 16/89 (17%), Positives = 33/89 (37%), Gaps = 9/89 (10%)

Query: 177 RLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRV 235
             +  L      +  + +A D Y  A ++  ++   + + G C ++     +AKE     
Sbjct: 71  DYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFEL- 129

Query: 236 KPAVADGPRGVDSHLKAYERAQQMLKDLE 264
              +       D  LK   +AQ  L  ++
Sbjct: 130 --VIQHSN---DEKLK--IKAQSYLDAIQ 151

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 49.4 bits (118), Expect = 3e-07
 Identities = 7/55 (12%), Positives = 16/55 (29%), Gaps = 1/55 (1%)

Query: 181 NLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRR 234
           +  +    +    EAE  +R        N   +  L      + +  +A +    
Sbjct: 41  SYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAV 95

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 64.2 bits (157), Expect = 7e-12
 Identities = 33/176 (18%), Positives = 58/176 (32%), Gaps = 26/176 (14%)

Query: 61  DPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDN 120
           D  +A      A+ +  + + A    A + +     ++A E+ +   S   D A E  +N
Sbjct: 23  DYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSA-EINNN 81

Query: 121 ILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLG 180
               L  R  R  + +A          + LA     T                 A     
Sbjct: 82  YGWFLCGRLNRPAESMAYFD-------KALADPTYPTPY--------------IA---NL 117

Query: 181 NLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRV 235
           N G    +Q  +  AE   +R+L+  P        L    M  G++G+A    ++ 
Sbjct: 118 NKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKY 173

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 55.0 bits (133), Expect = 9e-09
 Identities = 11/63 (17%), Positives = 22/63 (34%), Gaps = 1/63 (1%)

Query: 173 QEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNKM-CNLGICLMKQGRIGEAKET 231
            + + +   L    M+  +Y +A  +   AL   P N                  +A+E+
Sbjct: 5   NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQES 64

Query: 232 LRR 234
            R+
Sbjct: 65  FRQ 67

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 54.6 bits (132), Expect = 1e-08
 Identities = 21/123 (17%), Positives = 39/123 (31%), Gaps = 23/123 (18%)

Query: 181 NLGWALMQQNNYIEAEDAYRRALSIAPDN-NKMCNLGICLMKQ-GRIGEAKETLRRVKPA 238
                        +A++++R+ALSI PD+     N G  L  +  R  E+     +   A
Sbjct: 47  VRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDK---A 103

Query: 239 VADG--PRGVDSH----------------LKAYERAQQMLKDLESEMMNKGGDRVEQSRL 280
           +AD   P    ++                    +R+                 ++   +L
Sbjct: 104 LADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL 163

Query: 281 FDA 283
            DA
Sbjct: 164 GDA 166

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 66.0 bits (162), Expect = 7e-12
 Identities = 37/203 (18%), Positives = 60/203 (29%), Gaps = 32/203 (15%)

Query: 60  KDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLD 119
            D E A                 L  ++ +  Q  R + +         +    A E+  
Sbjct: 13  GDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLA-EAYS 71

Query: 120 NILLDLYKRCGRLDDQIALLK--------HKLYLIQQGLAFNGKRTKTARSQGKKFQVSV 171
           N L ++YK  G+L + I   +             I    A          + G   + +V
Sbjct: 72  N-LGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAAL--------VAAGD-MEGAV 121

Query: 172 E--QEATRL-------LGNLGWALMQQNNYIEAEDAYRRALSIAPDNNKM-CNLGICLMK 221
           +    A +          +LG  L       EA+  Y +A+   P+      NLG     
Sbjct: 122 QAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNA 181

Query: 222 QGRIGEAKETLRRV---KPAVAD 241
           QG I  A     +     P   D
Sbjct: 182 QGEIWLAIHHFEKAVTLDPNFLD 204

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 66.0 bits (162), Expect = 7e-12
 Identities = 42/195 (21%), Positives = 73/195 (37%), Gaps = 33/195 (16%)

Query: 60  KDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAI-KSLRSRCSD-QAQES 117
              ++AI  +  A+           ++A  +      E A++A   +L+        +  
Sbjct: 81  GQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSD 140

Query: 118 LDNILLDLYKRCGRLDDQIALLKHKLYL--------IQQGLAFNGKRTKTARSQGKKFQV 169
           L N+L  L    GRL++  A     +             G  FN +          +  +
Sbjct: 141 LGNLLKAL----GRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQ---------GEIWL 187

Query: 170 SVE--QEATRL-------LGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICL 219
           ++   ++A  L         NLG  L +   +  A  AY RALS++P++     NL    
Sbjct: 188 AIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVY 247

Query: 220 MKQGRIGEAKETLRR 234
            +QG I  A +T RR
Sbjct: 248 YEQGLIDLAIDTYRR 262

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 65.3 bits (160), Expect = 1e-11
 Identities = 44/207 (21%), Positives = 70/207 (33%), Gaps = 40/207 (19%)

Query: 60  KDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIE----AIKSLRSRCSDQAQ 115
            D E A+  + +A+     +     D+  ++K   R EEA      AI+  +   +  A 
Sbjct: 115 GDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE-TQPNFAV-AW 172

Query: 116 ESLDNILLDLYKRCGRLDDQIALLKHKLYL--------IQQGLAFNGKRTKTARSQGKKF 167
            +L  +        G +   I   +  + L        I  G           +     F
Sbjct: 173 SNLGCVFNAQ----GEIWLAIHHFEKAVTLDPNFLDAYINLGNVL--------KEARI-F 219

Query: 168 QVSVE--QEATRL-------LGNLGWALMQQNNYIEAEDAYRRALSIAPDNNKM-CNLGI 217
             +V     A  L        GNL     +Q     A D YRRA+ + P      CNL  
Sbjct: 220 DRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLAN 279

Query: 218 CLMKQGRIGEAKETLRRV---KPAVAD 241
            L ++G + EA++         P  AD
Sbjct: 280 ALKEKGSVAEAEDCYNTALRLCPTHAD 306

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 65.3 bits (160), Expect = 1e-11
 Identities = 33/205 (16%), Positives = 64/205 (31%), Gaps = 36/205 (17%)

Query: 60  KDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAI-KSLRSRCSD-QAQES 117
           +  +++      AI     +  A  ++  V K++ + +EAIE    +LR +        +
Sbjct: 47  RRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYIN 106

Query: 118 LDNILLDLYKRCGRLDDQIALLKHKLYL--------IQQGLAFNGKRTKTARSQGKKFQV 169
           L   L+      G ++  +      L             G           ++ G+  + 
Sbjct: 107 LAAALVAA----GDMEGAVQAYVSALQYNPDLYCVRSDLGNLL--------KALGR-LEE 153

Query: 170 SVE--QEATRL-------LGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICL 219
           +     +A            NLG     Q     A   + +A+++ P+      NLG  L
Sbjct: 154 AKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVL 213

Query: 220 MKQGRIGEAKETLRRV---KPAVAD 241
            +      A     R     P  A 
Sbjct: 214 KEARIFDRAVAAYLRALSLSPNHAV 238

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 63.3 bits (155), Expect = 6e-11
 Identities = 38/189 (20%), Positives = 62/189 (32%), Gaps = 38/189 (20%)

Query: 60  KDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIK---SLRSRCSDQAQE 116
            +   AI  F  A+        A  ++  V+K+    + A+ A     SL    +     
Sbjct: 183 GEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAV-VHG 241

Query: 117 SLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEAT 176
           +L  +  +     G +D  I   +       + +                          
Sbjct: 242 NLACVYYEQ----GLIDLAIDTYR-------RAIELQPHFPDA----------------- 273

Query: 177 RLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRR- 234
               NL  AL ++ +  EAED Y  AL + P +   + NL     +QG I EA    R+ 
Sbjct: 274 --YCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKA 331

Query: 235 --VKPAVAD 241
             V P  A 
Sbjct: 332 LEVFPEFAA 340

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 60.6 bits (148), Expect = 4e-10
 Identities = 39/190 (20%), Positives = 66/190 (34%), Gaps = 40/190 (21%)

Query: 60  KDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIE----AIKSLRSRCSDQAQ 115
           +  ++A+  +  A++          ++A V  +Q   + AI+    AI+ L+    D A 
Sbjct: 217 RIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE-LQPHFPD-AY 274

Query: 116 ESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEA 175
            +L N L +     G + +               L        +                
Sbjct: 275 CNLANALKEK----GSVAEAEDCY-------NTALRLCPTHADS---------------- 307

Query: 176 TRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNKM-CNLGICLMKQGRIGEAKETLRR 234
              L NL     +Q N  EA   YR+AL + P+      NL   L +QG++ EA    + 
Sbjct: 308 ---LNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE 364

Query: 235 V---KPAVAD 241
                P  AD
Sbjct: 365 AIRISPTFAD 374

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 56.4 bits (137), Expect = 9e-09
 Identities = 30/161 (18%), Positives = 47/161 (29%), Gaps = 32/161 (19%)

Query: 85  DMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLY 144
           ++A    Q    E A      L  +  D     L  +L  ++ +C RLD           
Sbjct: 4   ELAHREYQAGDFEAAERHCMQLWRQEPDNT-GVL-LLLSSIHFQCRRLDRSAHFS----- 56

Query: 145 LIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALS 204
                +  N    +                      NLG    ++    EA + YR AL 
Sbjct: 57  --TLAIKQNPLLAEA-------------------YSNLGNVYKERGQLQEAIEHYRHALR 95

Query: 205 IAPDNNKM-CNLGICLMKQGRIGEAKETLRRV---KPAVAD 241
           + PD      NL   L+  G +  A +         P +  
Sbjct: 96  LKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYC 136

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 53.7 bits (130), Expect = 7e-08
 Identities = 33/169 (19%), Positives = 59/169 (34%), Gaps = 37/169 (21%)

Query: 60  KDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIE----AIKSLRSRCSDQAQ 115
              + AI  +  AI        A  ++A  +K++    EA +    A++ L    +D + 
Sbjct: 251 GLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALR-LCPTHAD-SL 308

Query: 116 ESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEA 175
            +L NI  +     G +++ + L        ++ L                       E 
Sbjct: 309 NNLANIKREQ----GNIEEAVRLY-------RKALEVF-------------------PEF 338

Query: 176 TRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDN-NKMCNLGICLMKQG 223
                NL   L QQ    EA   Y+ A+ I+P   +   N+G  L +  
Sbjct: 339 AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 65.8 bits (161), Expect = 8e-12
 Identities = 37/203 (18%), Positives = 61/203 (30%), Gaps = 34/203 (16%)

Query: 61  DPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIK---SLRSRCSDQAQES 117
           D   A+ LF AA+    +   A + +     +  +   AI A++    L+      A  +
Sbjct: 79  DLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQT-ALMA 137

Query: 118 LDNILLDLYKRCGRLDDQIALLK---------HKLYLIQQGLAFNGKRTKTARSQGKKFQ 168
           L     +             +L+           L    +  A       + R  G    
Sbjct: 138 LAVSFTNE----SLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLS 193

Query: 169 VSVEQEATRLL----------------GNLGWALMQQNNYIEAEDAYRRALSIAPDNNKM 212
            S+  E   L                   LG        Y +A D +  ALS+ P++  +
Sbjct: 194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLL 253

Query: 213 -CNLGICLMKQGRIGEAKETLRR 234
              LG  L    +  EA    RR
Sbjct: 254 WNKLGATLANGNQSEEAVAAYRR 276

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 61.2 bits (149), Expect = 3e-10
 Identities = 38/214 (17%), Positives = 61/214 (28%), Gaps = 42/214 (19%)

Query: 54  NVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIK--------- 104
             Q  ++    AI      +       +AL  +A+    ++   +A E ++         
Sbjct: 106 TTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAY 165

Query: 105 --SLRSRCSDQAQESLDNILLDL--YKRCGRLDDQIALLKHKLYL----------IQQGL 150
              +           L      L          +   L    + L             G+
Sbjct: 166 AHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGV 225

Query: 151 AFNGKRTKTARSQGKKFQVSVE--QEATRL-------LGNLGWALMQQNNYIEAEDAYRR 201
            FN            ++  +V+    A  +          LG  L   N   EA  AYRR
Sbjct: 226 LFNLSG---------EYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRR 276

Query: 202 ALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRR 234
           AL + P   +   NLGI  +  G   EA E    
Sbjct: 277 ALELQPGYIRSRYNLGISCINLGAHREAVEHFLE 310

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 53.1 bits (128), Expect = 1e-07
 Identities = 12/66 (18%), Positives = 22/66 (33%), Gaps = 12/66 (18%)

Query: 181 NLGWALMQQNNYIEAEDAYRRALSIAPDN------------NKMCNLGICLMKQGRIGEA 228
           NLG + +    + EA + +  AL++   +            N    L + L   G+    
Sbjct: 290 NLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349

Query: 229 KETLRR 234
                R
Sbjct: 350 GAADAR 355

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 11/55 (20%), Positives = 20/55 (36%), Gaps = 1/55 (1%)

Query: 181 NLGWALMQQNNYIEAEDAYRRALSIAPDNNKM-CNLGICLMKQGRIGEAKETLRR 234
             G   +Q+ +   A   +  A+   P + +    LG    +  +   A   LRR
Sbjct: 69  EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRR 123

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 60.9 bits (148), Expect = 1e-11
 Identities = 15/77 (19%), Positives = 30/77 (38%), Gaps = 6/77 (7%)

Query: 181 NLGWALMQQNNYIEAEDAYRRALSIAPDNNKM-CNLGICLMKQGRIGEAKETLRRVKPAV 239
            LG        Y +AE      +   P++  +     + L   GR  +  E L +    +
Sbjct: 32  GLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLK---II 88

Query: 240 ADGPRGVDSHLKAYERA 256
           A+     D  +++Y++A
Sbjct: 89  AETSD--DETIQSYKQA 103

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 65.0 bits (159), Expect = 1e-11
 Identities = 25/176 (14%), Positives = 50/176 (28%), Gaps = 20/176 (11%)

Query: 60  KDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLD 119
            + ++A+  ++ A          +  + +     N ++ A        S   +     + 
Sbjct: 139 SEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDP-FVMH 197

Query: 120 NILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLL 179
            + + +  + G            L  I+                              LL
Sbjct: 198 EVGV-VAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEP-----------------LL 239

Query: 180 GNLGWALMQQNNYIEAEDAYRRALSIAPDN-NKMCNLGICLMKQGRIGEAKETLRR 234
            NLG    +   Y EA D +R+AL + P N +    +G      G    A +    
Sbjct: 240 NNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHT 295

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 58.5 bits (142), Expect = 2e-09
 Identities = 22/172 (12%), Positives = 48/172 (27%), Gaps = 30/172 (17%)

Query: 82  ALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKH 141
            +  +A         +   +    +  +    A   L   +  L +   + ++   L  H
Sbjct: 24  VVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHA-SCLPVHIGTLVEL-NKANELFYLS-H 80

Query: 142 KLYLIQ---------QGLAFNGKRTKTARSQGKKFQVSVE--QEATRL-------LGNLG 183
           KL  +           G  +           G K + +     +AT L           G
Sbjct: 81  KLVDLYPSNPVSWFAVGCYY--------LMVGHKNEHARRYLSKATTLEKTYGPAWIAYG 132

Query: 184 WALMQQNNYIEAEDAYRRALSIAPDN-NKMCNLGICLMKQGRIGEAKETLRR 234
            +   ++ + +A  AY  A  +       M  +G+          A+    +
Sbjct: 133 HSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQ 184

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 54.2 bits (131), Expect = 4e-08
 Identities = 13/69 (18%), Positives = 21/69 (30%), Gaps = 10/69 (14%)

Query: 178 LLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNKM----------CNLGICLMKQGRIGE 227
           ++  +G    Q   +  AE  +  AL                    NLG    K  +  E
Sbjct: 195 VMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254

Query: 228 AKETLRRVK 236
           A +  R+  
Sbjct: 255 ALDYHRQAL 263

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 53.5 bits (129), Expect = 6e-08
 Identities = 6/64 (9%), Positives = 19/64 (29%), Gaps = 1/64 (1%)

Query: 173 QEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKET 231
           QE   ++ +L        ++          +   P +   +      L++  +  E    
Sbjct: 19  QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYL 78

Query: 232 LRRV 235
             ++
Sbjct: 79  SHKL 82

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 60.5 bits (147), Expect = 2e-11
 Identities = 10/55 (18%), Positives = 17/55 (30%), Gaps = 1/55 (1%)

Query: 181 NLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRR 234
           +LG    +      A  A   A  + P +      L +    +     A  +LR 
Sbjct: 56  SLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRA 110

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 47.8 bits (114), Expect = 5e-07
 Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 4/71 (5%)

Query: 181 NLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAV 239
             G ++++  N  EA  A+       P+  +   +LG+   +  + G A   L     A 
Sbjct: 22  EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNH---AR 78

Query: 240 ADGPRGVDSHL 250
              P+ +  H 
Sbjct: 79  MLDPKDIAVHA 89

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 64.1 bits (156), Expect = 2e-11
 Identities = 27/204 (13%), Positives = 63/204 (30%), Gaps = 40/204 (19%)

Query: 49  YVRAKNVQLVDKDPEKAIPLFWAAI----NAGDRVDSA--LKDMAIVMKQQNRAEEAIEA 102
           Y +A       K  E+A   +        N      +A   +   +++K   R  EA++ 
Sbjct: 39  YAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQY 98

Query: 103 IKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQG-----LAFNGKRT 157
           I+                    +Y   G  D     L     L++       +    +  
Sbjct: 99  IE----------------KASVMYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAA 142

Query: 158 KTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK------ 211
               ++ +       ++A  L+G     L++Q  + EA  + ++  S+  +         
Sbjct: 143 AVFENEER------LRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYK 196

Query: 212 -MCNLGICLMKQGRIGEAKETLRR 234
                 +  + +     A++ +R 
Sbjct: 197 KCIAQVLVQLHRADYVAAQKCVRE 220

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 46.4 bits (110), Expect = 9e-06
 Identities = 23/167 (13%), Positives = 56/167 (33%), Gaps = 34/167 (20%)

Query: 81  SALKDMAIVMKQQNRAEEAIEAIK-----SLRSRCSDQAQESLDNILLDLYKRCGRLDDQ 135
           S     A+  K   + E+A +A          +R    A ++ +     + K   R+ + 
Sbjct: 37  SEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAG-MMLKDLQRMPEA 95

Query: 136 IALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEA 195
           +  ++    +  +    +                     A   L   G  LM+  +  +A
Sbjct: 96  VQYIEKASVMYVENGTPDT--------------------AAMALDRAG-KLMEPLDLSKA 134

Query: 196 EDAYRRALSIAPDNNK-------MCNLGICLMKQGRIGEAKETLRRV 235
              Y++A ++  +  +       +      L++Q +  EA  +L++ 
Sbjct: 135 VHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKE 181

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 61.1 bits (148), Expect = 2e-11
 Identities = 16/87 (18%), Positives = 32/87 (36%), Gaps = 5/87 (5%)

Query: 181 NLGWALMQQNNYIEAEDAYRRALSIAPDNNKM-CNLGICLMKQGRIGEAKETLRRVKPAV 239
            LG        Y  A  +Y     +     +   +   CL++ G + EA+  L   +  +
Sbjct: 60  GLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELI 119

Query: 240 ADGPRGVDSHLKAYERAQQMLKDLESE 266
           A+ P       +   R   ML+ ++ +
Sbjct: 120 ANXPE----FXELSTRVSSMLEAIKLK 142

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 52.6 bits (126), Expect = 2e-08
 Identities = 12/88 (13%), Positives = 25/88 (28%), Gaps = 4/88 (4%)

Query: 181 NLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRR---VK 236
           +L +   Q   Y +A   ++    +   +++    LG C    G+   A  +      + 
Sbjct: 26  SLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85

Query: 237 PAVADGPRGVDSHLKAYERAQQMLKDLE 264
                 P      L       +    L 
Sbjct: 86  IXEPRFPFHAAECLLQXGELAEAESGLF 113

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 63.5 bits (155), Expect = 4e-11
 Identities = 36/247 (14%), Positives = 72/247 (29%), Gaps = 45/247 (18%)

Query: 54  NVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIK--------- 104
             Q  ++    AI     A     +  +    +A+    ++ A  A+ +++         
Sbjct: 63  LTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQY 122

Query: 105 ----SLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYL--------IQQGLAF 152
               S+  +      +         +       +   LL   L +           G+ +
Sbjct: 123 EQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLY 182

Query: 153 NGKRTKTARSQGKKFQVSVE--QEATRL-------LGNLGWALMQQNNYIEAEDAYRRAL 203
           N             +  +    + A  L          LG  L   N   EA DAY RAL
Sbjct: 183 NLSN---------NYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRAL 233

Query: 204 SIAPDNNK-MCNLGICLMKQGRIGEAKETLRRV---KP--AVADGPRGVDSHLKAYERAQ 257
            I P   + M N+ +      +   A + L R    +       G    ++    ++  +
Sbjct: 234 DINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFR 293

Query: 258 QMLKDLE 264
            +L  + 
Sbjct: 294 MLLNVMN 300

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 62.3 bits (152), Expect = 9e-11
 Identities = 12/104 (11%), Positives = 28/104 (26%), Gaps = 7/104 (6%)

Query: 181 NLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAV 239
           +LG    +      A  A   A  + P +      L +    +     A  +LR     +
Sbjct: 60  SLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRA---WL 116

Query: 240 ADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDA 283
              P+            Q  +   +  + ++       +   + 
Sbjct: 117 LSQPQYEQLG---SVNLQADVDIDDLNVQSEDFFFAAPNEYREC 157

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 54.2 bits (131), Expect = 4e-08
 Identities = 26/185 (14%), Positives = 57/185 (30%), Gaps = 23/185 (12%)

Query: 60  KDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIK---SLRSRCSDQAQE 116
            +  +A   F A   A    + A + + +   +  +   AI A+     L  +       
Sbjct: 35  ANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIA-VHA 93

Query: 117 SLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEAT 176
           +L     +        +  +A L+         L    +  +      +    +      
Sbjct: 94  ALAVSHTNE----HNANAALASLR-------AWLLSQPQYEQLGSVNLQ----ADVDIDD 138

Query: 177 RLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNKM-CNLGICLMKQGRIGEAKETLRR- 234
             + +  +     N Y E       AL + P++ ++  +LG+          A   LRR 
Sbjct: 139 LNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRA 198

Query: 235 --VKP 237
             ++P
Sbjct: 199 VELRP 203

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 1/55 (1%)

Query: 181 NLGWALMQQNNYIEAEDAYRRALSIAPDN-NKMCNLGICLMKQGRIGEAKETLRR 234
             G ++++  N  EA  A+      AP+      +LG+   +  + G A   L  
Sbjct: 26  EEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNH 80

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 8/67 (11%), Positives = 17/67 (25%), Gaps = 13/67 (19%)

Query: 181 NLGWALMQQNNYIEAEDAYRRALSIAPDN-------------NKMCNLGICLMKQGRIGE 227
           N+  +    + Y  A     RA+ +                 +      + L    R   
Sbjct: 245 NMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDL 304

Query: 228 AKETLRR 234
            + T  +
Sbjct: 305 VELTYAQ 311

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 61.8 bits (151), Expect = 4e-11
 Identities = 23/181 (12%), Positives = 55/181 (30%), Gaps = 30/181 (16%)

Query: 86  MAIVMKQQNRAEEAIEAIK---SLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHK 142
           + + +    R + A+   +       +  + A   L    L L    G ++  +   K  
Sbjct: 11  LGVQLYALGRYDAALTLFERALKENPQDPE-ALYWLARTQLKL----GLVNPALENGKTL 65

Query: 143 LYL--------IQQGLAFN--GKRTKTARSQGKKFQVSVE--QEATRL-------LGNLG 183
           +          +    A+    ++ +         + ++   ++A R+           G
Sbjct: 66  VARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRG 125

Query: 184 WALMQQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRV---KPAVA 240
                     +AE + ++AL++         L    +  GR+ EA     +     P   
Sbjct: 126 LVYALLGERDKAEASLKQALALEDTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDL 185

Query: 241 D 241
           D
Sbjct: 186 D 186

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 59.9 bits (146), Expect = 2e-10
 Identities = 32/185 (17%), Positives = 58/185 (31%), Gaps = 38/185 (20%)

Query: 82  ALKDMAIVMKQQNRAEEAIEAIK---SLRSRCSDQAQESLDNILLDLYKRC-------GR 131
           AL  +A    +      A+E  K   +   R        L    + LY++        G 
Sbjct: 41  ALYWLARTQLKLGLVNPALENGKTLVARTPRYLG-GYMVLSEAYVALYRQAEDRERGKGY 99

Query: 132 LDDQIALLKHKLYL--------IQQGLAFNGKRTKTARSQGKKFQVSVE--QEATRL--- 178
           L+  +++LK    +        +Q+GL +           G+    +    ++A  L   
Sbjct: 100 LEQALSVLKDAERVNPRYAPLHLQRGLVY--------ALLGE-RDKAEASLKQALALEDT 150

Query: 179 ---LGNLGWALMQQNNYIEAEDAYRRALSIAPDNNKM-CNLGICLMKQGRIGEAKETLR- 233
                 L    +      EA   Y +AL  AP +  +       L+ +G+  EA      
Sbjct: 151 PEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAAL 210

Query: 234 RVKPA 238
                
Sbjct: 211 EHHHH 215

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 57.5 bits (140), Expect = 1e-09
 Identities = 15/65 (23%), Positives = 21/65 (32%), Gaps = 4/65 (6%)

Query: 181 NLGWALMQQNNYIEAEDAYRRALSIAPDNNKM-CNLGICLMKQGRIGEAKETLRR---VK 236
            LG  L     Y  A   + RAL   P + +    L    +K G +  A E  +      
Sbjct: 10  RLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART 69

Query: 237 PAVAD 241
           P    
Sbjct: 70  PRYLG 74

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 63.1 bits (154), Expect = 6e-11
 Identities = 24/207 (11%), Positives = 56/207 (27%), Gaps = 28/207 (13%)

Query: 54  NVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIE----AIKSLRSR 109
              L       A+  F AA++       A    A V     +++ A+      I  L+  
Sbjct: 11  KKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIA-LKMD 69

Query: 110 CSDQAQESLDNILLDL---------YKRCGRLD--DQIALLKHKLYLIQQGLAFNGKRTK 158
               A+    ++LL           +K+  + +  +Q         +    +     +  
Sbjct: 70  -FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQAL 128

Query: 159 TARSQGKKFQVSVEQ---------EATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDN 209
            A      +  ++               L        +++    +A    + A  +  DN
Sbjct: 129 DAFDGAD-YTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDN 187

Query: 210 -NKMCNLGICLMKQGRIGEAKETLRRV 235
                 +     + G    +   +R  
Sbjct: 188 TEAFYKISTLYYQLGDHELSLSEVREC 214

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 60.7 bits (148), Expect = 3e-10
 Identities = 32/234 (13%), Positives = 63/234 (26%), Gaps = 39/234 (16%)

Query: 60  KDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKS-------------L 106
            D   AI      +          +  A    ++    +AI  +K+              
Sbjct: 134 ADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYK 193

Query: 107 RSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGK- 165
            S          +  L +  + C +LD          Y   + L    +  +     G+ 
Sbjct: 194 ISTL-YYQLGDHELSLSE-VRECLKLDQDHKRC-FAHYKQVKKLNKLIESAEELIRDGRY 250

Query: 166 -----------KFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MC 213
                      K + SV +   R    +     +    +EA       L + PDN   + 
Sbjct: 251 TDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALK 310

Query: 214 NLGICLMKQGRIGEAKETLRRV---KPAVADGPRGVDSHLKAYERAQQMLKDLE 264
           +     + +    EA +                       +  E+AQ++LK  +
Sbjct: 311 DRAEAYLIEEMYDEAIQDYEAAQEHNENDQQ-------IREGLEKAQRLLKQSQ 357

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 57.3 bits (139), Expect = 4e-09
 Identities = 15/105 (14%), Positives = 34/105 (32%), Gaps = 8/105 (7%)

Query: 179 LGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKP 237
                   +       A     + +++  D        G  L+KQG++ EA++  ++   
Sbjct: 40  YYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKK--- 96

Query: 238 AVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFD 282
            +   P    S  +  E   Q++K  E + +            + 
Sbjct: 97  VLKSNP----SEQEEKEAESQLVKADEMQRLRSQALDAFDGADYT 137

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 12/56 (21%), Positives = 19/56 (33%), Gaps = 1/56 (1%)

Query: 181 NLGWALMQQNNYIEAEDAYRRALSIAPDNNKM-CNLGICLMKQGRIGEAKETLRRV 235
            LG  L+      +A   +  A+   PDN           +  G+   A   L +V
Sbjct: 8   ELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKV 63

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 61.1 bits (149), Expect = 1e-10
 Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 6/67 (8%)

Query: 181 NLGWALMQQNNYIEAEDAYRRALSIAPDN-NKMCNLGICLMKQGRIGEAKETLRRV---- 235
            L      +     A++ YR+AL+    N   + N G  L +Q R  EA + L       
Sbjct: 76  ALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDT 135

Query: 236 -KPAVAD 241
             P  + 
Sbjct: 136 LYPERSR 142

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 58.0 bits (141), Expect = 1e-09
 Identities = 30/186 (16%), Positives = 55/186 (29%), Gaps = 38/186 (20%)

Query: 60  KDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIE----AIKSLRSRCSDQAQ 115
            +P+ A   +  A+ +  R    L +    + +Q R EEA +    A +        +  
Sbjct: 85  MEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVF 144

Query: 116 ESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEA 175
           E+L  + L +     +        +       + L  N  +                   
Sbjct: 145 ENLGLVSLQM----KKPAQAKEYFE-------KSLRLNRNQPSV---------------- 177

Query: 176 TRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMK-QGRIGEAKE---T 231
                 +   L ++  Y+ A   Y         N +   LGI L K       A      
Sbjct: 178 ---ALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQ 234

Query: 232 LRRVKP 237
           L+R+ P
Sbjct: 235 LKRLYP 240

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 55.4 bits (134), Expect = 1e-08
 Identities = 23/91 (25%), Positives = 33/91 (36%), Gaps = 13/91 (14%)

Query: 181 NLGWALMQQNNYIEAEDAYRRALSIAPDNNKM-CNLGICLMKQGRIGEAKETLRRVKPAV 239
            LG   +Q+ N  +A+   R+AL I P +      L +    +     A E  R+   A+
Sbjct: 42  QLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRK---AL 98

Query: 240 ADGPRGVDSH---------LKAYERAQQMLK 261
           A   R               K YE A Q L 
Sbjct: 99  ASDSRNARVLNNYGGFLYEQKRYEEAYQRLL 129

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 63.1 bits (153), Expect = 1e-10
 Identities = 28/205 (13%), Positives = 64/205 (31%), Gaps = 28/205 (13%)

Query: 60  KDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAI-KSLRSRCSDQAQESL 118
               +A  L   A+     +  A   +  V  ++     A      +L    +  + ++L
Sbjct: 117 DYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNL 176

Query: 119 DNILLDL-----YKRCGRLDDQIALLKHKLYL--------IQQGLAFNGKRTKTARSQGK 165
             +L  L      +    + D +   K  + +           G A+      T ++   
Sbjct: 177 SMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKI 236

Query: 166 KFQVSVE--QEATRLLG----------NLGWALMQQNNYIEAEDAYRRALSIAPDNNKM- 212
             Q ++    +A ++            N       + +Y EA + + +A ++ P   +  
Sbjct: 237 -SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQ 295

Query: 213 CNLGICLMKQGRIGEAKETLRRVKP 237
                 L    R+    E+  + KP
Sbjct: 296 QREQQLLEFLSRLTSLLESKGKTKP 320

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 53.9 bits (129), Expect = 7e-08
 Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 2/61 (3%)

Query: 177 RLLGNLGWALMQQNNYI-EAEDAYRRALSIAPDNNKM-CNLGICLMKQGRIGEAKETLRR 234
           + L   G AL    +Y  EAE    +A+ + P+  +    LG    K+G +  A      
Sbjct: 103 QALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162

Query: 235 V 235
            
Sbjct: 163 A 163

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 53.1 bits (127), Expect = 1e-07
 Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 1/61 (1%)

Query: 181 NLGWALMQQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVA 240
            LG    ++ +   A   +  AL+   +   + NL + L +        E  R V  +V 
Sbjct: 142 QLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQT-DSGDEHSRHVMDSVR 200

Query: 241 D 241
            
Sbjct: 201 Q 201

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 62.4 bits (152), Expect = 1e-10
 Identities = 34/236 (14%), Positives = 70/236 (29%), Gaps = 31/236 (13%)

Query: 60  KDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLD 119
            D   AI      +          +  A    ++    +AI  +K+     +D   E+  
Sbjct: 157 GDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNT-EAFY 215

Query: 120 NILLDLYKRCGRLDDQIALLK------------HKLYLIQQGLAFNGKRTKTARSQGK-- 165
            I   LY + G  +  ++ ++               Y   + L    +  +     G+  
Sbjct: 216 KIST-LYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYT 274

Query: 166 ----------KFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCN 214
                     K + S+ +   R    +     +    +EA       L + PDN   + +
Sbjct: 275 DATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKD 334

Query: 215 LGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNK 270
                + +    EA +       A            +  E+AQ++LK  +     K
Sbjct: 335 RAEAYLIEEMYDEAIQDYET---AQEHNENDQQIR-EGLEKAQRLLKQSQKRDYYK 386

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 60.1 bits (146), Expect = 7e-10
 Identities = 30/187 (16%), Positives = 60/187 (32%), Gaps = 22/187 (11%)

Query: 54  NVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIE----AIKSLRSR 109
              L       A+  F AA++       A    A V     +++ A+      I+ L+  
Sbjct: 34  KKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ-LKMD 92

Query: 110 CSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQV 169
               A+    ++LL      G+LD+     K       + L  N    +   +Q +  + 
Sbjct: 93  -FTAARLQRGHLLLKQ----GKLDEAEDDFK-------KVLKSNPSENEEKEAQSQLIKS 140

Query: 170 SVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNKM-CNLGICLMKQGRIGEA 228
              Q       +         +Y  A     + L +   + ++      C +K+G   +A
Sbjct: 141 DEMQRLR----SQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKA 196

Query: 229 KETLRRV 235
              L+  
Sbjct: 197 ISDLKAA 203

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 47.0 bits (112), Expect = 9e-06
 Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 2/64 (3%)

Query: 173 QEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKET 231
            +  + L  LG  L+      +A   +  A+   PDN           +  G+   A   
Sbjct: 24  ADVEKHL-ELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPD 82

Query: 232 LRRV 235
           L +V
Sbjct: 83  LTKV 86

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 32/175 (18%), Positives = 52/175 (29%), Gaps = 47/175 (26%)

Query: 60  KDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLD 119
           + P +AI +    +       +ALKD A     +   +EAI+                  
Sbjct: 309 EKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQD----------------- 351

Query: 120 NILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLL 179
                 Y+     ++    ++  L   Q+ L          +SQ + +            
Sbjct: 352 ------YETAQEHNENDQQIREGLEKAQRLLK---------QSQKRDY------------ 384

Query: 180 GNLGWALMQQNNYIEAEDAYR-RALSIAPDNNK-MCNLGICLMKQGRIGEAKETL 232
                 + +     E   AYR  AL   PDN +          K   I  AKE L
Sbjct: 385 -YKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVL 438

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 41.2 bits (97), Expect = 6e-04
 Identities = 30/245 (12%), Positives = 68/245 (27%), Gaps = 58/245 (23%)

Query: 49  YVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRS 108
            ++  ++ L     ++A   F   + +    +   +  + ++K         +A+ +  S
Sbjct: 97  RLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGS 156

Query: 109 RCSDQAQESLDNILL-------------DLYKRCGRLDDQIALLKHKLYLIQQGLAFNGK 155
                A   LD IL              + + + G     I+ LK    L          
Sbjct: 157 GDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL---------- 206

Query: 156 RTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDN------ 209
                           + + T     +     Q  ++  +    R  L +  D+      
Sbjct: 207 ----------------KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAH 250

Query: 210 -------NKMCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYER---AQQM 259
                  NK+      L++ GR  +A          +   P   +  +++ ER       
Sbjct: 251 YKQVKKLNKLIESAEELIRDGRYTDATSKYES---VMKTEPSIAEYTVRSKERICHCFSK 307

Query: 260 LKDLE 264
            +   
Sbjct: 308 DEKPV 312

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 62.9 bits (153), Expect = 1e-10
 Identities = 9/55 (16%), Positives = 21/55 (38%), Gaps = 1/55 (1%)

Query: 181 NLGWALMQQNNYIEAEDAYRRALSIAPDNNKM-CNLGICLMKQGRIGEAKETLRR 234
            LG   MQ  N + A +  + + ++   +  +   LG+    +  +  A    + 
Sbjct: 446 FLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQN 500

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 59.5 bits (144), Expect = 2e-09
 Identities = 24/173 (13%), Positives = 55/173 (31%), Gaps = 22/173 (12%)

Query: 63  EKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNIL 122
           ++AI  +  A             + +   Q      A E ++S  +         L+ + 
Sbjct: 424 DQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDP-LLLNELG 482

Query: 123 LDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNL 182
           +  + +   +   I   ++ L L+++  +       T                     NL
Sbjct: 483 VVAFNK-SDMQTAINHFQNALLLVKKTQSNEKPWAAT-------------------WANL 522

Query: 183 GWALMQQNNYIEAEDAYRRALSIAPDNNKM-CNLGICLMKQGRIGEAKETLRR 234
           G A  +   Y  A DA  + L ++ ++  +   + +  + +   G A   L  
Sbjct: 523 GHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHE 575

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 58.3 bits (141), Expect = 4e-09
 Identities = 26/163 (15%), Positives = 48/163 (29%), Gaps = 20/163 (12%)

Query: 81  SALKDMAIVMKQQNRAEEAI--------------EAIKSLRSRCSDQAQESLDNILLDLY 126
           S       V    +  + A               EA   L S     A E  D +L   Y
Sbjct: 201 SMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNY 260

Query: 127 KRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWAL 186
               + D         LY+++     +    + A        ++  ++++ LL      L
Sbjct: 261 STYSKEDAAFLRS---LYMLKLNKTSHEDELRRAEDYLSS--INGLEKSSDLLLCKADTL 315

Query: 187 MQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEA 228
             ++ +I+      + L I P N          L + G   + 
Sbjct: 316 FVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKL 358

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 55.2 bits (133), Expect = 3e-08
 Identities = 20/172 (11%), Positives = 45/172 (26%), Gaps = 31/172 (18%)

Query: 82  ALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKH 141
            L   A  +  ++R  + +     +         +      L      G  +    +  +
Sbjct: 307 LLLCKADTLFVRSRFIDVLAITTKILEIDPYNL-DVYPL-HLASLHESGEKNKLYLIS-N 363

Query: 142 KLYLIQ---------QGLAFNGKRTKTARSQGKKFQVSVE--QEATRL-------LGNLG 183
            L              G+ +             K   +     +++ +            
Sbjct: 364 DLVDRHPEKAVTWLAVGIYYLCV---------NKISEARRYFSKSSTMDPQFGPAWIGFA 414

Query: 184 WALMQQNNYIEAEDAYRRALSIAPDN-NKMCNLGICLMKQGRIGEAKETLRR 234
            +   +  + +A  AY  A  +          LG+  M+ G I  A E L+ 
Sbjct: 415 HSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQS 466

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 52.5 bits (126), Expect = 2e-07
 Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 8/68 (11%)

Query: 177 RLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNKM--------CNLGICLMKQGRIGEA 228
            LL  LG     +++   A + ++ AL +                NLG    K      A
Sbjct: 476 LLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAA 535

Query: 229 KETLRRVK 236
            + L +  
Sbjct: 536 IDALNQGL 543

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 51.4 bits (123), Expect = 5e-07
 Identities = 19/194 (9%), Positives = 49/194 (25%), Gaps = 28/194 (14%)

Query: 60  KDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQ--ES 117
            + ++A   +  A+    +   A   +          E  +    +  +   + A    S
Sbjct: 214 SNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRS 273

Query: 118 LDNILLDLYKRCGRLDDQIALLK-------HKLYLIQQGLAFNGKRTKTARSQGKKFQVS 170
           L  + L+       L      L            L+ +              + + F   
Sbjct: 274 LYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLF--------VRSR-FIDV 324

Query: 171 VE--QEATRL-------LGNLGWALMQQNNYIEAEDAYRRALSIAPDN-NKMCNLGICLM 220
           +    +   +             +L +     +        +   P+       +GI  +
Sbjct: 325 LAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYL 384

Query: 221 KQGRIGEAKETLRR 234
              +I EA+    +
Sbjct: 385 CVNKISEARRYFSK 398

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 61.6 bits (150), Expect = 2e-10
 Identities = 39/198 (19%), Positives = 60/198 (30%), Gaps = 29/198 (14%)

Query: 61  DPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIK---SLRSRCSDQAQES 117
           D    I    AAI        A + + I   +    + AI A++    L+      A  +
Sbjct: 80  DLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLK-ALMA 138

Query: 118 LDNILLDLYKRCGRLDDQIALLK---------HKLYLIQQGLAFNGKRTKTARSQGKKFQ 168
           L     +         D    LK           L   ++G     +R   +       +
Sbjct: 139 LAVSYTNT----SHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLE 194

Query: 169 VSVE--QEATRLLG---------NLGWALMQQNNYIEAEDAYRRALSIAPDNNKM-CNLG 216
              E   EA    G          LG        +  A DA+  AL++ P++  +   LG
Sbjct: 195 GVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLG 254

Query: 217 ICLMKQGRIGEAKETLRR 234
             L    R  EA E   R
Sbjct: 255 ATLANGDRSEEAVEAYTR 272

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 58.9 bits (143), Expect = 1e-09
 Identities = 37/176 (21%), Positives = 52/176 (29%), Gaps = 30/176 (17%)

Query: 63  EKAI---PLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLD 119
           +  I   P +   +          + M+      +  E   E       +  D     L 
Sbjct: 157 KNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQ 216

Query: 120 NILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLL 179
             L  L+   G  +  I              AFN      A        ++V  E   L 
Sbjct: 217 TGLGVLFHLSGEFNRAID-------------AFN-----AA--------LTVRPEDYSLW 250

Query: 180 GNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRR 234
             LG  L   +   EA +AY RAL I P   +   NLGI  +  G   EA      
Sbjct: 251 NRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLT 306

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 9/55 (16%), Positives = 18/55 (32%), Gaps = 1/55 (1%)

Query: 181 NLGWALMQQNNYIEAEDAYRRALSIAPDNNKM-CNLGICLMKQGRIGEAKETLRR 234
             G   +++ +          A+   P + +    LGI   +      A   L+R
Sbjct: 70  EEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQR 124

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 40.8 bits (96), Expect = 9e-04
 Identities = 19/135 (14%), Positives = 37/135 (27%), Gaps = 20/135 (14%)

Query: 166 KFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGR 224
           K Q   E+ A R   +       Q     +E  Y         +       G+  +K+G 
Sbjct: 21  KMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGD 80

Query: 225 IGEAKETLRRVKPAVADGPRGVDSH----------------LKAYERAQQMLKDLESEMM 268
           +      +     A+   P   ++                 + A +R  ++  +    +M
Sbjct: 81  LPVTILFMEA---AILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALM 137

Query: 269 NKGGDRVEQSRLFDA 283
                    S   DA
Sbjct: 138 ALAVSYTNTSHQQDA 152

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 59.9 bits (146), Expect = 3e-10
 Identities = 30/217 (13%), Positives = 66/217 (30%), Gaps = 32/217 (14%)

Query: 60  KDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLD 119
            + E AI     A+  G  + +  K ++    +   A   +            +  E   
Sbjct: 52  GEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLG--------DLKKTIEYYQ 103

Query: 120 NILL-----DLYKRCGRLDDQIALLKHKLYLI-QQGLAFNGKRTKTARSQGKKFQVSVE- 172
             L      D+  +    + ++   + + Y+  ++      +           +  +V+ 
Sbjct: 104 KSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGK--EYFTKSDWPNAVKA 161

Query: 173 -QEATRL-------LGNLGWALMQQNNYIEAEDAYRRALSIAPDNNKM-CNLGICLMKQG 223
             E  +          N   AL +  ++ EA     +A+   P+  +         +   
Sbjct: 162 YTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVK 221

Query: 224 RIGEAKETLRRV---KPAVADG--PRGVD-SHLKAYE 254
               A ETL         V +G   R +D  + KA +
Sbjct: 222 EYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 258

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 46.8 bits (112), Expect = 6e-06
 Identities = 10/51 (19%), Positives = 18/51 (35%)

Query: 181 NLGWALMQQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKET 231
             G    +   + EA + Y +A  +  D   + N      ++G    A  T
Sbjct: 10  AEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAIST 60

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 45.6 bits (109), Expect = 1e-05
 Identities = 10/103 (9%), Positives = 24/103 (23%), Gaps = 21/103 (20%)

Query: 181 NLGWALMQQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVA 240
            +  +  +  N        ++ +     +         L K     +             
Sbjct: 77  VISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKE------------ 124

Query: 241 DGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDA 283
                    LK  E    +  +   E   +G +   +S   +A
Sbjct: 125 ---------LKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNA 158

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.8 bits (149), Expect = 3e-10
 Identities = 79/491 (16%), Positives = 153/491 (31%), Gaps = 151/491 (30%)

Query: 57  LVDKDPEKAIP-LFWAAINAGDR-----VDSALKD-----MAIVMKQQNRAEEAIEAIKS 105
           ++ KD       LFW  ++  +      V+  L+      M+ +  +Q +          
Sbjct: 55  IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE 114

Query: 106 LRSRCSDQAQESLDNILLDLYKRCGRLDDQIAL------LKHKLYLIQQGLAFNGKRT-- 157
            R R  +      DN +   Y    RL   + L      L+    ++  G+  +GK    
Sbjct: 115 QRDRLYN------DNQVFAKYNVS-RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA 167

Query: 158 -KTARSQGKK----FQV---SV--EQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAP 207
                S   +    F++   ++        +L       M Q    + +  +  + S   
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL------EMLQKLLYQIDPNWT-SRSDHS 220

Query: 208 DNNKMCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEM 267
            N K+           RI   +  LRR+               K YE     L  L    
Sbjct: 221 SNIKL-----------RIHSIQAELRRLL------------KSKPYENC---LLVL---- 250

Query: 268 MNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTTNAIKTRD----DFADENIDSNVD 323
                  V+ ++ ++AF  S        CK  IL T     TR     DF      +++ 
Sbjct: 251 -----LNVQNAKAWNAFNLS--------CK--ILLT-----TRFKQVTDFLSAATTTHIS 290

Query: 324 VNPI-----------VLSKH---------RSVKKLFPTA---------NAIKTQENFADE 354
           ++             +L K+         R V    P           + + T +N+   
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV 350

Query: 355 NINANIVVNQTVLAQ------QRGVQQLAPFGNSWNIDAPPFYSSKFVKEPIVKDP--IG 406
           N +    + ++ L        ++   +L+ F  S +I  P    S    + I  D   + 
Sbjct: 351 NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI--PTILLSLIWFDVIKSDVMVVV 408

Query: 407 NQYHES--LKRTRSGNATNSMRLPDVGEHTRPFAMEPEKPENKT---RRLSQS-SEESGD 460
           N+ H+   +++       +++ +P +    +       K EN+    R +    +     
Sbjct: 409 NKLHKYSLVEK---QPKESTISIPSIYLELK------VKLENEYALHRSIVDHYNIPKTF 459

Query: 461 KLSYLLPDDED 471
               L+P   D
Sbjct: 460 DSDDLIPPYLD 470

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.5 bits (130), Expect = 7e-08
 Identities = 57/374 (15%), Positives = 101/374 (27%), Gaps = 133/374 (35%)

Query: 239 VADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQS-RLFD-----------AFLG 286
           V D P+ +             L   E + +    D V  + RLF             F+ 
Sbjct: 38  VQDMPKSI-------------LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVE 84

Query: 287 SS---------SIWQPQPCKDHILPTTNAIKTRDDFADEN---IDSNVDVNPIVLSKHRS 334
                      S  + +  +   + T   I+ RD   ++N      NV      L   ++
Sbjct: 85  EVLRINYKFLMSPIKTE-QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA 143

Query: 335 VKKLFPTANAIKTQENFADENINANIVVN------QTVLA----QQRGVQQLAPFGNSWN 384
           + +L P                  N++++      +T +A        VQ    F   W 
Sbjct: 144 LLELRP----------------AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW- 186

Query: 385 IDAPPFYSSKFVKEPIVK-----DPIGNQYHESLKRTRSGNATNSMRLPDVGEHTRPFAM 439
           ++     S + V E + K     DP      +     +       +R+  +    R    
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK-------LRIHSIQAELRRLLK 239

Query: 440 EPEKPE---------NK---------------TRRLS--------QSSEESGDKLSYLLP 467
                          N                TR            ++  S D  S  L 
Sbjct: 240 SKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299

Query: 468 DDEDFEEAIIAAVLG-STNEQPGKSSEASNNS----SVIIEKKID-------------KR 509
            DE   ++++   L     + P    E    +    S+I E   D              +
Sbjct: 300 PDE--VKSLLLKYLDCRPQDLP---REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK 354

Query: 510 LKVFQDITL-SLSP 522
           L    + +L  L P
Sbjct: 355 LTTIIESSLNVLEP 368

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 5e-04
 Identities = 45/228 (19%), Positives = 74/228 (32%), Gaps = 70/228 (30%)

Query: 296 CKDHILPT-TNAIKTRDDFAD-----ENIDSNVDVNPIVLSKHR--SVKKLFPTANAIKT 347
            KD IL    +A     D  D     ++I S  +++ I++SK       +LF T   + +
Sbjct: 18  YKD-ILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWT---LLS 73

Query: 348 QENFADENINANIVVNQTVLAQQRGVQQLAPFGNSWNIDAPPFYSSKFVKEPIVKDPIGN 407
           +                    Q+  VQ+         I+   F  S    E      +  
Sbjct: 74  K--------------------QEEMVQKF--VEEVLRINYK-FLMSPIKTEQRQPSMMTR 110

Query: 408 QYHESLKRTRSGNATNSMRLPDVGEHTRPFAMEPEKPENKTRRLSQSSEESGDKLSYLLP 467
            Y E   R  + N              + FA       N +R       +   KL   L 
Sbjct: 111 MYIEQRDRLYNDN--------------QVFA-----KYNVSR------LQPYLKLRQALL 145

Query: 468 DDEDFEEAIIAAVLGSTNEQPGKSSEASNNSSVIIEKKIDKRL--KVF 513
           +    +  +I  VLGS     GK+  A     V +  K+  ++  K+F
Sbjct: 146 ELRPAKNVLIDGVLGS-----GKTWVA---LDVCLSYKVQCKMDFKIF 185

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 59.0 bits (143), Expect = 3e-10
 Identities = 23/183 (12%), Positives = 64/183 (34%), Gaps = 14/183 (7%)

Query: 56  QLVDKDPEKAIPLFWAAINAGDRVDSALK-DMAIVMKQQNRAEEAIEAIKSLRSRCSDQA 114
           Q +  + ++    +W  ++    + S L  ++A+  K+    ++A    K L  +  +  
Sbjct: 29  QTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNV 88

Query: 115 QESLDNILLDLYKRCGRLDDQIALLK--------HKLYLIQQGLAF--NGKRTKTARSQG 164
            + L+    ++    G+  D + + +        +    I  G  +    ++ K      
Sbjct: 89  -DCLEA-CAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETD 146

Query: 165 KKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGR 224
            K ++S   +        G + +    Y +A ++ ++ +   P       L   L  +  
Sbjct: 147 YK-KLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDKILRIEKE 205

Query: 225 IGE 227
           +  
Sbjct: 206 VNR 208

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 55.1 bits (133), Expect = 7e-09
 Identities = 13/65 (20%), Positives = 28/65 (43%), Gaps = 1/65 (1%)

Query: 172 EQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKE 230
            + +++L   L  A  +  NY +A   Y+  L  AP+N   +       + +G+  +A  
Sbjct: 50  SEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALR 109

Query: 231 TLRRV 235
              ++
Sbjct: 110 MYEKI 114

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 7/72 (9%), Positives = 19/72 (26%), Gaps = 17/72 (23%)

Query: 181 NLGWALMQQNNYIEAEDAYRRALSIAPDN-----------------NKMCNLGICLMKQG 223
               A ++     +A   +R+ +++  D                       L +   K  
Sbjct: 9   QKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNR 68

Query: 224 RIGEAKETLRRV 235
              +A    + +
Sbjct: 69  NYDKAYLFYKEL 80

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 57.8 bits (141), Expect = 5e-10
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 181 NLGWALMQQNNYIEAEDAYRRALSIAPDNNKM-CNLGICLMKQGRIGEAKETLRR 234
            LG AL     + EA D+++ AL + P+  K+   +     + GR  EA    ++
Sbjct: 115 RLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKK 169

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 57.5 bits (140), Expect = 8e-10
 Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 1/55 (1%)

Query: 181 NLGWALMQQNNYIEAEDAYRRALSIAPDNNKM-CNLGICLMKQGRIGEAKETLRR 234
            LG   +Q   Y  A     +     P N  +   LG+ L   GR  EA ++ + 
Sbjct: 81  VLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKI 135

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 55.9 bits (136), Expect = 2e-09
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 181 NLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRV 235
           +LG A ++        +   R+L+ APDN K    LG+  ++  +   A   L +V
Sbjct: 47  HLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKV 102

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 55.5 bits (135), Expect = 3e-09
 Identities = 11/55 (20%), Positives = 21/55 (38%), Gaps = 1/55 (1%)

Query: 181 NLGWALMQQNNYIEAEDAYRRALSIAPDNNKM-CNLGICLMKQGRIGEAKETLRR 234
           + G +  +   Y +A     +       +  +  +LGI  +K G +    E L R
Sbjct: 13  DKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLER 67

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 41.3 bits (98), Expect = 2e-04
 Identities = 4/29 (13%), Positives = 12/29 (41%)

Query: 181 NLGWALMQQNNYIEAEDAYRRALSIAPDN 209
            + ++  Q   + EA   +++A  +    
Sbjct: 149 AIAFSYEQMGRHEEALPHFKKANELDEGA 177

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 60.1 bits (146), Expect = 7e-10
 Identities = 32/227 (14%), Positives = 68/227 (29%), Gaps = 45/227 (19%)

Query: 60  KDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAI-KSLRSRCSDQAQESL 118
                 +          +    AL    I    +N   +A   + +S+    +  +   L
Sbjct: 223 DMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFL 282

Query: 119 DNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRL 178
              L D         +     +       + +  N +   T                   
Sbjct: 283 ALTLADK----ENSQEFFKFFQ-------KAVDLNPEYPPT------------------- 312

Query: 179 LGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRV-- 235
             + G       +Y  A++ +++A S+ P+N      L   L KQG+  E++        
Sbjct: 313 YYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKL 372

Query: 236 -KPAVADGP--RGV--------DSHLKAYERAQQMLKDLESEMMNKG 271
             P + + P             D+ +K Y+ A+++ +  E   +  G
Sbjct: 373 KFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIG 419

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 54.7 bits (132), Expect = 4e-08
 Identities = 25/225 (11%), Positives = 50/225 (22%), Gaps = 54/225 (24%)

Query: 60  KDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLR------------ 107
            D EK I     A+        AL   A   +      +A+  +  L             
Sbjct: 73  GDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEP 132

Query: 108 ----------SRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKL-------------- 143
                      +  ++     +     +      L     +    L              
Sbjct: 133 MLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTA 192

Query: 144 -YLIQQGLAFNGKRTKTARSQGKKF---QVSVEQEATRL--------------LGNLGWA 185
             L+   L      T                +                     L   G  
Sbjct: 193 YALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIF 252

Query: 186 LMQQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKE 230
              +NN ++A+   + ++++ P  N    L + L  +    E  +
Sbjct: 253 HFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFK 297

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 53.2 bits (128), Expect = 1e-07
 Identities = 16/110 (14%), Positives = 37/110 (33%), Gaps = 3/110 (2%)

Query: 181 NLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLR--RVKP 237
           N+    +   +  +  +   +AL I PD++K +          G   +A   L    +  
Sbjct: 64  NISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNG 123

Query: 238 AVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGS 287
                           ++A ++L +  S+   +G   +  +    +F G 
Sbjct: 124 DFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGI 173

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 53.2 bits (128), Expect = 1e-07
 Identities = 23/180 (12%), Positives = 46/180 (25%), Gaps = 21/180 (11%)

Query: 60  KDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIE----AIKSLRSRCSDQAQ 115
           +D + A   F  A +           +A ++ +Q +  E+                +   
Sbjct: 324 QDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKL-KFPTLPE-VP 381

Query: 116 ESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEA 175
                IL D     G  D  I                   + K     G       +   
Sbjct: 382 TFFAEILTDR----GDFDTAIKQYD-------IAKRLEEVQEKIHVGIGPLIG---KATI 427

Query: 176 TRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNKM-CNLGICLMKQGRIGEAKETLRR 234
                +     + +  +  A     +A  + P + +    L    ++  +I EA E    
Sbjct: 428 LARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFED 487

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 49.0 bits (117), Expect = 3e-06
 Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 1/51 (1%)

Query: 181 NLGWALMQQNNYIEAEDAYRRALSIAPDNNKM-CNLGICLMKQGRIGEAKE 230
           N G       N+ EA   Y+ A+ + P+      N+  C +  G + +  E
Sbjct: 30  NRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIE 80

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 181 NLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRR 234
            LG  L Q  N+  A +A+   L + P  N    N GI L   GR   A++ L  
Sbjct: 82  YLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLA 136

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 50.8 bits (122), Expect = 3e-07
 Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 1/56 (1%)

Query: 181 NLGWALMQQNNYIEAEDAYRRALSIAPDNNKM-CNLGICLMKQGRIGEAKETLRRV 235
             G           A + + +AL+I PD  ++   LGI L + G    A E    V
Sbjct: 48  ERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSV 103

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 50.8 bits (122), Expect = 4e-07
 Identities = 22/184 (11%), Positives = 51/184 (27%), Gaps = 17/184 (9%)

Query: 60  KDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAI-KSLRSRCSD-QAQES 117
            + + A   F + +      + A  +  I +    R + A + +    +   +D      
Sbjct: 91  GNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLW 150

Query: 118 LDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKR-TKTARSQGKKFQVSVE--QE 174
           L      L         +  L +H     ++   +N         S+    +       +
Sbjct: 151 LYLAEQKL----DEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATD 206

Query: 175 ATRL-------LGNLGWALMQQNNYIEAEDAYRRALSIAPDNNKM-CNLGICLMKQGRIG 226
            T L          LG   +   +   A   ++ A++    N        + L   G+  
Sbjct: 207 NTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQ 266

Query: 227 EAKE 230
           +   
Sbjct: 267 DDLA 270

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 54.7 bits (133), Expect = 2e-09
 Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 181 NLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRR 234
           NLG A  +Q +Y EA + Y++AL + P+N +   NLG    KQG   EA E  ++
Sbjct: 14  NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 54.3 bits (132), Expect = 3e-09
 Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 181 NLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKE 230
           NLG A  +Q +Y EA + Y++AL + P+N +   NLG    KQG   EA E
Sbjct: 48  NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIE 98

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 50.1 bits (121), Expect = 8e-08
 Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 1/44 (2%)

Query: 181 NLGWALMQQNNYIEAEDAYRRALSIAPDNNKM-CNLGICLMKQG 223
           NLG A  +Q +Y EA + Y++AL + P+N +   NLG    KQG
Sbjct: 82  NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 57.1 bits (139), Expect = 2e-09
 Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 1/56 (1%)

Query: 181 NLGWALMQQNNYIEAEDAYRRALSIAPDNNKM-CNLGICLMKQGRIGEAKETLRRV 235
            LG  L++      A    +RA+ +  ++ +     G+CL  +G + EA      V
Sbjct: 130 MLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAV 185

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 55.6 bits (135), Expect = 7e-09
 Identities = 10/55 (18%), Positives = 17/55 (30%), Gaps = 1/55 (1%)

Query: 181 NLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRR 234
             G  L  +    EA   +       P +     N G+    +    +A E L +
Sbjct: 164 QFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDK 218

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 53.3 bits (129), Expect = 4e-08
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 181 NLGWALMQQNNYIEAEDAYRRALSIAPDN-NKMCNLGICLMKQGRIGEAKETLRR 234
             G   + +  Y EA+D + +AL    +N +    LG  L+K  +   A   L+R
Sbjct: 96  GAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQR 150

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 52.1 bits (126), Expect = 1e-07
 Identities = 11/55 (20%), Positives = 17/55 (30%), Gaps = 1/55 (1%)

Query: 181 NLGWALMQQNNYIEAEDAYRRALSIAPDNNKM-CNLGICLMKQGRIGEAKETLRR 234
           N    L   N    A   Y +AL +           G   + +    EAK+   +
Sbjct: 62  NFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEK 116

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 48.3 bits (116), Expect = 2e-06
 Identities = 8/45 (17%), Positives = 16/45 (35%), Gaps = 1/45 (2%)

Query: 181 NLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGR 224
           N G     + N  +A +   +A+ I PD+   +    +       
Sbjct: 198 NAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHHH 242

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 47.1 bits (113), Expect = 5e-06
 Identities = 7/56 (12%), Positives = 18/56 (32%), Gaps = 1/56 (1%)

Query: 181 NLGWALMQQNNYIEAEDAYRRALSIAPDNNKM-CNLGICLMKQGRIGEAKETLRRV 235
                  +  +Y +A +A+ +A+    ++     N    L     +  A     + 
Sbjct: 28  QQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKA 83

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 54.7 bits (133), Expect = 2e-09
 Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 181 NLGWALMQQNNYIEAEDAYRRALSIAPDNNKM-CNLGICLMKQGRIGEAKETLRR 234
           NLG A  +Q +Y EA + Y++AL + P + +   NLG    KQG   EA E  ++
Sbjct: 74  NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 128

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 53.9 bits (131), Expect = 5e-09
 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 181 NLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKE 230
           NLG A  +Q +Y EA + Y++AL + P + +   NLG    KQG   EA E
Sbjct: 40  NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIE 90

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 52.8 bits (128), Expect = 1e-08
 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 181 NLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKE 230
           NLG A  +Q +Y EA + Y++AL + P + +   NLG    KQG   EA E
Sbjct: 6   NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIE 56

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 42.4 bits (101), Expect = 4e-05
 Identities = 12/29 (41%), Positives = 19/29 (65%)

Query: 181 NLGWALMQQNNYIEAEDAYRRALSIAPDN 209
           NLG A  +Q +Y EA + Y++AL + P +
Sbjct: 108 NLGNAYYKQGDYDEAIEYYQKALELDPRS 136

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 52.8 bits (128), Expect = 4e-09
 Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 181 NLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKE 230
           NLG A  +Q +Y EA + Y++AL + P+N +   NLG    KQG   EA E
Sbjct: 14  NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIE 64

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 48.2 bits (116), Expect = 1e-07
 Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 1/44 (2%)

Query: 181 NLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQG 223
           NLG A  +Q +Y EA + Y++AL + P+N +   NLG    KQG
Sbjct: 48  NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 91

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 55.4 bits (134), Expect = 5e-09
 Identities = 24/189 (12%), Positives = 51/189 (26%), Gaps = 38/189 (20%)

Query: 64  KAIPLFWAAINA----GDRVD--SALKDMAIVMKQQNRAEEAIEAIK---SLRSRCSDQA 114
           +A     A   A            A   +  V    +R +EA  + +       +  D  
Sbjct: 4   EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHT 63

Query: 115 QE--SLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVE 172
            E  +L  + + + +  G  D        +  L+             + +          
Sbjct: 64  AEHRALHQVGM-VERMAGNWDAARRCFLEERELLAS---LPEDPLAASAN---------- 109

Query: 173 QEATRLLGNLGWALMQQNNYIEAEDAYRRALSIA---PDNNKM----CNLGICLMKQGRI 225
                    +    +   +   A   Y ++L  A    D   +      LG    ++  +
Sbjct: 110 ------AYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163

Query: 226 GEAKETLRR 234
            EA++   R
Sbjct: 164 LEAQQHWLR 172

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 46.1 bits (110), Expect = 6e-06
 Identities = 27/183 (14%), Positives = 48/183 (26%), Gaps = 40/183 (21%)

Query: 61  DPEKAIPLFWAAIN----AGDRVD--SALKDMAIVMKQQNRAEEAIEAIK---SLRSRCS 111
             ++A   F A       +GD      AL  + +V +     + A         L +   
Sbjct: 41  RFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLP 100

Query: 112 DQAQE---SLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQ 168
           +       +    +  +    G L       +  L   QQ       +   A +      
Sbjct: 101 EDPLAASANAYE-VATVALHFGDLAGARQEYEKSLVYAQQ----ADDQVAIACA------ 149

Query: 169 VSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAP---DNNKMC----NLGICLMK 221
                        LG    Q+ N +EA+  + RA  I     D+  +      L      
Sbjct: 150 ----------FRGLGDLAQQEKNLLEAQQHWLRARDIFAELEDSEAVNELMTRLNGLEHH 199

Query: 222 QGR 224
              
Sbjct: 200 HHH 202

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 17/124 (13%), Positives = 37/124 (29%), Gaps = 23/124 (18%)

Query: 177 RLLGNLGWALMQQNNYIEAEDAYRRALSIA---PDNNKM----CNLGICLMKQGRIGEAK 229
                LG+     + + EA  +++     A    D+         +G+     G    A+
Sbjct: 27  GARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAAR 86

Query: 230 ETLRR---VKPAVADGPRG----------VDSHLKAYERAQQMLKDLES-EMMNKGGDRV 275
                   +  ++ + P            V  H      A+Q  +  +S     +  D+V
Sbjct: 87  RCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYE--KSLVYAQQADDQV 144

Query: 276 EQSR 279
             + 
Sbjct: 145 AIAC 148

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 55.7 bits (134), Expect = 2e-08
 Identities = 24/175 (13%), Positives = 52/175 (29%), Gaps = 32/175 (18%)

Query: 55  VQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCS--- 111
           ++      E+A   F  A+    +       +AI   + +    +  AI  LR       
Sbjct: 147 LKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP 206

Query: 112 --DQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQV 169
                +  L   L  + +      +   L++       + L                   
Sbjct: 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVE-------EALEKA---------------- 243

Query: 170 SVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQG 223
                 T +L +      +++   +A +  ++AL   P+N    C +G C   + 
Sbjct: 244 ---PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKV 295

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 54.6 bits (131), Expect = 4e-08
 Identities = 24/174 (13%), Positives = 51/174 (29%), Gaps = 5/174 (2%)

Query: 46  DTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAI-K 104
           +         + + +    A+     A  A D +      +A +    ++ EEA     K
Sbjct: 300 NLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQK 359

Query: 105 SLRSRCSDQAQESLDNILLDLYKRCGRLDDQ-IALLKHKLYLIQQGLAFNGKRTKTARSQ 163
                 +  A++ L     +      + +D+ I     +   I Q      K     +  
Sbjct: 360 EFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFI-EGVKINQKSREKEKMKDKLQKI 418

Query: 164 GKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDN-NKMCNLG 216
            K  ++S     +  L  L +         +A++   R L       +     G
Sbjct: 419 AKM-RLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 49.6 bits (118), Expect = 1e-06
 Identities = 11/60 (18%), Positives = 19/60 (31%), Gaps = 5/60 (8%)

Query: 181 NLGWAL----MQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRV 235
            L   L     +     E E     AL  AP     + +      ++    +A E L++ 
Sbjct: 214 LLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKA 273

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 46.5 bits (110), Expect = 1e-05
 Identities = 26/187 (13%), Positives = 56/187 (29%), Gaps = 14/187 (7%)

Query: 53  KNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSD 112
             ++   ++  +   L   A+     V   L+  A   ++++  ++AIE +K        
Sbjct: 220 HKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLK-------- 271

Query: 113 QAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVE 172
           +A E + N      +       ++  + +       G     +    A +  KK      
Sbjct: 272 KALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKA-DEAN 330

Query: 173 QEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNKM----CNLG-ICLMKQGRIGE 227
               R+   L       + Y EAE  +++  S               G   L +     +
Sbjct: 331 DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDK 390

Query: 228 AKETLRR 234
           A      
Sbjct: 391 AIHHFIE 397

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 41.1 bits (96), Expect = 7e-04
 Identities = 21/156 (13%), Positives = 46/156 (29%), Gaps = 28/156 (17%)

Query: 90  MKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQG 149
           M+ +N  ++  + +       + + + ++ N+L  L    G+ +  +  L+    LIQQ 
Sbjct: 25  MEGENSLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQE 84

Query: 150 LAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDN 209
            A                    E  +    GN  W         + +    +   +    
Sbjct: 85  HADQ-----------------AEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127

Query: 210 NKM---------CNLGICLMK--QGRIGEAKETLRR 234
           +           C  G   +K    +   AK    +
Sbjct: 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEK 163

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 54.7 bits (131), Expect = 2e-08
 Identities = 36/198 (18%), Positives = 60/198 (30%), Gaps = 21/198 (10%)

Query: 70  WAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRC 129
             + +      + L   A +       + A+     L    S +       ILL L    
Sbjct: 91  EMSRSVDVTNTTFLLMAASIYFYDQNPDAALRT---LHQGDSLECMAMTVQILLKL---- 143

Query: 130 GRLDDQIALLKH-----------KLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRL 178
            RLD     LK            +L      LA  G++ + A    ++           L
Sbjct: 144 DRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEM-ADKCSPTLLL 202

Query: 179 LGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEA-KETLRRVK 236
           L       M Q  +  AE   + AL     + + + NL +     G+  E     L ++K
Sbjct: 203 LNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLK 262

Query: 237 PAVADGPRGVDSHLKAYE 254
            A    P   +   K  +
Sbjct: 263 DAHRSHPFIKEYRAKEND 280

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 55.5 bits (134), Expect = 2e-08
 Identities = 26/250 (10%), Positives = 59/250 (23%), Gaps = 32/250 (12%)

Query: 60  KDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQ--ES 117
           +  ++ +P+   A         A+       +     +  +  +        +Q     S
Sbjct: 120 ETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIAS 179

Query: 118 LDNILLDLYKRCGRLDDQIALLKHKLYLI-QQGLAFNGKRTKTARSQGKKFQVSVE--QE 174
                  L      +   + +L     L  QQ +A         +   +  Q  +    +
Sbjct: 180 NGGGKQAL----ETVQRLLPVLCQAHGLTPQQVVAIASN--GGGKQALETVQRLLPVLCQ 233

Query: 175 ATRL-------LGNLGWALMQQNNYIEAEDAYRRALSIAPDN-NKMCNLGICLMKQGRIG 226
           A  L       + + G                 +A  + P     + +          + 
Sbjct: 234 AHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQ 293

Query: 227 EAKETLRRV---KP--AVADGPRG--------VDSHLKAYERAQQMLKDLESEMMNKGGD 273
                L +     P   VA    G        V   L    +A  +       + +  G 
Sbjct: 294 RLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGG 353

Query: 274 RVEQSRLFDA 283
           +     +   
Sbjct: 354 KQALETVQRL 363

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 54.8 bits (132), Expect = 4e-08
 Identities = 22/231 (9%), Positives = 52/231 (22%), Gaps = 46/231 (19%)

Query: 60  KDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQ--ES 117
           +  ++ +P+   A     +   A+       +     +  +  +         Q     S
Sbjct: 290 ETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIAS 349

Query: 118 LDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATR 177
            D     L      +   + +L        Q      ++                     
Sbjct: 350 HDGGKQAL----ETVQRLLPVL-------CQAHGLTPEQVVA------------------ 380

Query: 178 LLGNLGWALMQQNNYIEAEDAYRRALSIAPDN-NKMCNLGICLMKQGRIGEAKETLRRV- 235
            + + G                 +A  + P+    + +          +      L +  
Sbjct: 381 -IASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAH 439

Query: 236 --KP--AVADGPRG--------VDSHLKAYERAQQMLKDLESEMMNKGGDR 274
              P   VA    G        + + L   + A   L +     +   G R
Sbjct: 440 GLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALTNDHLVALACLGGR 490

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 24/248 (9%), Positives = 57/248 (22%), Gaps = 28/248 (11%)

Query: 60  KDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLD 119
           +  +  +P+   A         A+       +     +  +  +         Q      
Sbjct: 154 ETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAI-- 211

Query: 120 NILLDLYKRCGRLDDQIALLKHKLYLI-QQGLAFNGKRTKTARSQGKKFQVSVE--QEAT 176
                  +    +   + +L     L  QQ +A         +   +  Q  +    +A 
Sbjct: 212 ASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASN--GGGKQALETVQRLLPVLCQAH 269

Query: 177 RL-------LGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEA 228
            L       + +                   +A  + P     + + G        +   
Sbjct: 270 GLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRL 329

Query: 229 KETLRRV---KP--AVADGPRG--------VDSHLKAYERAQQMLKDLESEMMNKGGDRV 275
              L +     P   VA             V   L    +A  +  +    + + GG + 
Sbjct: 330 LPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQ 389

Query: 276 EQSRLFDA 283
               +   
Sbjct: 390 ALETVQRL 397

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 50.5 bits (121), Expect = 9e-07
 Identities = 18/204 (8%), Positives = 44/204 (21%), Gaps = 35/204 (17%)

Query: 60  KDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLD 119
           +  ++ +P+   A     +   A+       +     +  +  +        +Q      
Sbjct: 86  ETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVV--AI 143

Query: 120 NILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLL 179
                  +    +   + +L        Q                         E    +
Sbjct: 144 ASHDGGKQALETVQALLPVL-------CQAHGLT-------------------PEQVVAI 177

Query: 180 GNLGWALMQQNNYIEAEDAYRRALSIAPDN-NKMCNLGICLMKQGRIGEAKETLRRV--- 235
            + G                 +A  + P     + + G        +      L +    
Sbjct: 178 ASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGL 237

Query: 236 KP--AVADGPRG-VDSHLKAYERA 256
            P   VA    G     L+  +R 
Sbjct: 238 TPQQVVAIASNGGGKQALETVQRL 261

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 19/187 (10%), Positives = 53/187 (28%), Gaps = 24/187 (12%)

Query: 60  KDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQ--ES 117
           +  ++ +P+   A     +   A+       +     +  +  +        +Q     S
Sbjct: 324 ETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIAS 383

Query: 118 LDNILLDLYKRCGRLDDQIALLKHKLYLI-QQGLAFNGKRTKTARSQGKKFQVSVE--QE 174
                  L      +   + +L     L  +Q +A         +   +  Q  +    +
Sbjct: 384 NGGGKQAL----ETVQRLLPVLCQAHGLTPEQVVAIASH--DGGKQALETVQRLLPVLCQ 437

Query: 175 ATRL-------LGNLGWALMQQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGE 227
           A  L       + + G       + +        AL+   +++      + L   G    
Sbjct: 438 AHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALTNDH-----LVALACLGG-RP 491

Query: 228 AKETLRR 234
           A + +++
Sbjct: 492 ALDAVKK 498

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 50.9 bits (123), Expect = 3e-08
 Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 1/49 (2%)

Query: 181 NLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEA 228
             G       NY E+ D + +A+ + P+ +K     G  L    R  EA
Sbjct: 11  LEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEA 59

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 50.9 bits (123), Expect = 3e-08
 Identities = 11/58 (18%), Positives = 14/58 (24%), Gaps = 3/58 (5%)

Query: 181 NLGWALMQQNNYIEAEDAYRRALSIAPDNNKM---CNLGICLMKQGRIGEAKETLRRV 235
             G AL     Y EA D Y   +++  D             L          E     
Sbjct: 45  MKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEAR 102

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 40.1 bits (95), Expect = 2e-04
 Identities = 2/30 (6%), Positives = 6/30 (20%)

Query: 181 NLGWALMQQNNYIEAEDAYRRALSIAPDNN 210
               AL          +       +   ++
Sbjct: 81  AKADALRYIEGKEVEAEIAEARAKLEHHHH 110

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 54.6 bits (132), Expect = 3e-08
 Identities = 36/195 (18%), Positives = 64/195 (32%), Gaps = 39/195 (20%)

Query: 58  VDKDPEKAIPLFWAAIN----AGDRVD--SALKDMAIVMKQQNRAEEAIEAI-KSL--RS 108
           V +   +A+  +   +      GDR     A  ++          + AIE   + L    
Sbjct: 195 VKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAR 254

Query: 109 RCSDQAQE--SLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKK 166
              D+A E  +  N L + +   G+ +D     K  L L  +     G+R   A+S    
Sbjct: 255 EFGDRAAERRANSN-LGNSHIFLGQFEDAAEHYKRTLALAVE----LGEREVEAQS---- 305

Query: 167 FQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIA------PDNNKMC-NLGICL 219
                         +LG      + +  A + + R L+IA          + C +LG   
Sbjct: 306 ------------CYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAH 353

Query: 220 MKQGRIGEAKETLRR 234
              G    A +   +
Sbjct: 354 SAIGGHERALKYAEQ 368

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 53.8 bits (130), Expect = 6e-08
 Identities = 33/212 (15%), Positives = 64/212 (30%), Gaps = 38/212 (17%)

Query: 63  EKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAI-KSLRSRCSDQAQESLDNI 121
           +       +  + G  +   L      +         +     ++++   D    S   I
Sbjct: 32  DGNSQQG-SGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLS--AI 88

Query: 122 LLDL---YKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRL 178
              L   Y   G  +  +   KH L L +        R   A+S                
Sbjct: 89  YSQLGNAYFYLGDYNKAMQYHKHDLTLAKS----MNDRLGEAKS---------------- 128

Query: 179 LGNLGWALMQQNNYIEAEDAYRRALSIAPD-NNK------MCNLGICLMKQGRIGEAKET 231
            GNLG  L     + EA     R L++A    ++      + NLG     +G+    +  
Sbjct: 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNP 188

Query: 232 LRRVKPAVADGPRGVDSHLKAYERAQQMLKDL 263
            +          R     ++ Y+   ++++DL
Sbjct: 189 GKFGDDVKEALTRA----VEFYQENLKLMRDL 216

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 51.9 bits (125), Expect = 3e-07
 Identities = 49/265 (18%), Positives = 87/265 (32%), Gaps = 67/265 (25%)

Query: 61  DPEKAIPLFWAAI----NAGDRVD--SALKDMAIVMKQQNRAEEAIEAI-KSL--RSRCS 111
           D  KA+      +    +  DR+    +  ++   +K   R +EA     + L    +  
Sbjct: 101 DYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLG 160

Query: 112 DQAQE--SLDNILLDLYKRCGRLDDQIALLKHKLYLI----------QQGLAFN---GKR 156
           D+  E  +L N L ++Y   G+   Q    K    +           Q+ L      G R
Sbjct: 161 DRLSEGRALYN-LGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDR 219

Query: 157 TKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAP---DNNKM- 212
               R+                 GNLG       ++  A + ++  L IA    D     
Sbjct: 220 GAQGRA----------------CGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAER 263

Query: 213 ---CNLGICLMKQGRIGEAKETLRRV---------KPAVAD-----GPRGVDSHLKAYER 255
               NLG   +  G+  +A E  +R          +   A      G     + L  +  
Sbjct: 264 RANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLG--NTYTLLHEFNT 321

Query: 256 AQQML-KDLESEMMNKGGDRVEQSR 279
           A +   + L   +  + GDR+ ++R
Sbjct: 322 AIEYHNRHL--AIAQELGDRIGEAR 344

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 47.7 bits (114), Expect = 6e-06
 Identities = 12/150 (8%), Positives = 30/150 (20%), Gaps = 44/150 (29%)

Query: 120 NILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLL 179
           +   +     G          H     Q     +   +                     L
Sbjct: 10  SASAENVSSLGLGSGGGGTNSHDGNSQQGSG--SDGGSSMCLE----------------L 51

Query: 180 GNLGWALMQQNNYIEAEDAYRRALSIAPDNNKM-----CNLGICLMKQGRIGEAKETLRR 234
              G  L    +       ++ A+    ++ +        LG      G   +A      
Sbjct: 52  ALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKA------ 105

Query: 235 VKPAVADGPRGVDSHLKAYERAQQMLKDLE 264
                          ++ ++    + K + 
Sbjct: 106 ---------------MQYHKHDLTLAKSMN 120

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 29/157 (18%), Positives = 48/157 (30%), Gaps = 32/157 (20%)

Query: 61  DPEKAIPLFWAAIN----AGDRVD--SALKDMAIVMKQQNRAEEAIEAIK---SLRSRCS 111
           D + AI      +      GDR     A  ++        + E+A E  K   +L     
Sbjct: 238 DFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELG 297

Query: 112 DQAQE--SLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQV 169
           ++  E  S  + L + Y      +  I      L + Q+     G R   AR+       
Sbjct: 298 EREVEAQSCYS-LGNTYTLLHEFNTAIEYHNRHLAIAQE----LGDRIGEARA------- 345

Query: 170 SVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIA 206
                      +LG A      +  A     + L +A
Sbjct: 346 ---------CWSLGNAHSAIGGHERALKYAEQHLQLA 373

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 53.0 bits (128), Expect = 6e-08
 Identities = 20/186 (10%), Positives = 45/186 (24%), Gaps = 44/186 (23%)

Query: 60  KDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLD 119
            +  +AI +F                 A+   +  + + A + I++           +  
Sbjct: 17  NNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETY-----FSKVNATK 71

Query: 120 NILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVE--QEATR 177
               D                        G     K          +  ++++  Q A  
Sbjct: 72  AKSADFEYY--------------------GKILMKK---------GQDSLAIQQYQAAVD 102

Query: 178 L-------LGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAK 229
                    G +G     + N+  A     + +     + K    LG          +A 
Sbjct: 103 RDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKAD 162

Query: 230 ETLRRV 235
            +  +V
Sbjct: 163 SSFVKV 168

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 46.9 bits (112), Expect = 7e-06
 Identities = 9/64 (14%), Positives = 23/64 (35%), Gaps = 1/64 (1%)

Query: 181 NLGWALMQQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAV 239
                L + NNY EA + + +  +   ++  +     +C  +  +   A++ +      V
Sbjct: 8   RYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV 67

Query: 240 ADGP 243
               
Sbjct: 68  NATK 71

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 8/45 (17%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 181 NLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGR 224
            + +      + ++A+ A++  L++ P N K +  L + L     
Sbjct: 226 YIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHHH 270

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 53.6 bits (129), Expect = 8e-08
 Identities = 24/196 (12%), Positives = 57/196 (29%), Gaps = 39/196 (19%)

Query: 49  YVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDS-------ALKDMAIVMKQQNRAEEAIE 101
               ++    D+   KA  LF   ++  +  +        +L+   I    +N    A E
Sbjct: 199 KRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHE 258

Query: 102 AI-KSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTA 160
            I K++       +   +  I+ D         +                 F+      A
Sbjct: 259 DIKKAIELFPRVNSYIYMALIMADR----NDSTEYYN-------------YFD-----KA 296

Query: 161 RSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICL 219
                   + ++   + +  + G       NY +A   + +A  + P+N      L    
Sbjct: 297 --------LKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLA 348

Query: 220 MKQGRIGEAKETLRRV 235
            ++ +  + +      
Sbjct: 349 YRENKFDDCETLFSEA 364

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 50.5 bits (121), Expect = 9e-07
 Identities = 21/188 (11%), Positives = 54/188 (28%), Gaps = 24/188 (12%)

Query: 60  KDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQE--S 117
           ++ ++A   F  A             +A +  ++N+ ++        + +  +  +    
Sbjct: 318 QNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNF 377

Query: 118 LDNILLDLYKRCGRLDDQIALL--------KHKLYLIQQGLAFNGKRTKTARSQGKKFQV 169
              IL D        D  +           K     +            T     + F  
Sbjct: 378 FAEILTDK----NDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIE 433

Query: 170 SVE--QEATRL-------LGNLGWALMQQNNYIEAEDAYRRALSIAPDNNKMCNLGICLM 220
           +    ++A++L          L    +QQ +  EA   +  +  +A    +     I   
Sbjct: 434 ATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQ-AITFA 492

Query: 221 KQGRIGEA 228
           +  ++ + 
Sbjct: 493 EAAKVQQR 500

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 13/88 (14%), Positives = 33/88 (37%), Gaps = 8/88 (9%)

Query: 179 LGNLGWALMQQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPA 238
           L + G     +N+ + A +  ++A+ + P  N    + + +  +    E      +   A
Sbjct: 240 LEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDK---A 296

Query: 239 VADGPRGVDSHLKAYERAQ--QMLKDLE 264
           +         +   Y R Q   +L++ +
Sbjct: 297 LKLDSNNSSVY---YHRGQMNFILQNYD 321

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 12/50 (24%), Positives = 19/50 (38%)

Query: 181 NLGWALMQQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKE 230
           + G    +   Y +A   Y  AL +  D     NL  C +  G + +  E
Sbjct: 11  DKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVE 60

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 45.9 bits (109), Expect = 2e-05
 Identities = 22/192 (11%), Positives = 44/192 (22%), Gaps = 48/192 (25%)

Query: 60  KDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLD 119
            D  +    F  A+       S       +       ++A +                  
Sbjct: 284 NDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKD----------------- 326

Query: 120 NILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVE--QEATR 177
                 + +   LD +          IQ       +          KF        EA R
Sbjct: 327 ------FDKAKELDPENI-----FPYIQLACLAYRE---------NKFDDCETLFSEAKR 366

Query: 178 L-------LGNLGWALMQQNNYIEAEDAYRRALSIAPDNNKM-CNLGICLMKQGRIGEAK 229
                          L  +N++ +A   Y  A+ +    + +   +   + K   +    
Sbjct: 367 KFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLL-TRN 425

Query: 230 ETLRRVKPAVAD 241
            T+     A   
Sbjct: 426 PTVENFIEATNL 437

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 44.7 bits (106), Expect = 6e-05
 Identities = 10/56 (17%), Positives = 21/56 (37%), Gaps = 1/56 (1%)

Query: 181 NLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRV 235
           NL    +   +  +  +   +AL + PD +K +          G+  +A   L  +
Sbjct: 44  NLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVL 99

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 52.5 bits (126), Expect = 1e-07
 Identities = 24/188 (12%), Positives = 56/188 (29%), Gaps = 37/188 (19%)

Query: 60  KDPEKAIPLFWAAI----NAGDRVDSA--LKDMAIVMKQQNRAEEAIE----AIKSLRSR 109
           K+  +AI  +  A        D ++ A     +A       +   ++     A+   ++ 
Sbjct: 115 KEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNH 174

Query: 110 CSDQAQESL-DNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQ 168
                +      ++   Y      D  +  L+  L L              A S      
Sbjct: 175 PLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMD----IQNDRFIAIS------ 224

Query: 169 VSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK------MCNLGICLMKQ 222
                     L N+  +  +  +   A + +++A  ++ +         +  L   L K 
Sbjct: 225 ----------LLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKA 274

Query: 223 GRIGEAKE 230
           G+  +A +
Sbjct: 275 GQTQKAFQ 282

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 52.1 bits (125), Expect = 2e-07
 Identities = 29/186 (15%), Positives = 63/186 (33%), Gaps = 32/186 (17%)

Query: 60  KDPEKAIPLFWAAI----NAGDRVDSA--LKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQ 113
           ++   AI  F  A        DR++ A     M+       +   +++            
Sbjct: 117 REYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMD-----------Y 165

Query: 114 AQESLD--NILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSV 171
           A+++ +          R  +     A     L   +  ++   K    A ++ +   +  
Sbjct: 166 ARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMG- 224

Query: 172 EQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-------MCNLGICLMKQGR 224
                R L N+G     Q+ Y +A   ++RA+++  ++N           +     K G+
Sbjct: 225 -----RTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGK 279

Query: 225 IGEAKE 230
           I +A E
Sbjct: 280 IDKAHE 285

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 48.8 bits (117), Expect = 2e-07
 Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 10/91 (10%)

Query: 181 NLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAV 239
           +LG A  +Q ++ +A   Y +A+ + P N     N      ++ +  E  +   +   AV
Sbjct: 13  DLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEK---AV 69

Query: 240 ADGPRGVDSHL---KAYER---AQQMLKDLE 264
             G      +    KA  R   A Q   DL 
Sbjct: 70  EVGRETRADYKLIAKAMSRAGNAFQKQNDLS 100

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 45.3 bits (108), Expect = 4e-06
 Identities = 9/66 (13%), Positives = 18/66 (27%), Gaps = 8/66 (12%)

Query: 178 LLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK--------MCNLGICLMKQGRIGEAK 229
              N      ++  + E      +A+ +  +           M   G    KQ  +  A 
Sbjct: 44  FYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAV 103

Query: 230 ETLRRV 235
           +   R 
Sbjct: 104 QWFHRS 109

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 35/217 (16%), Positives = 61/217 (28%), Gaps = 44/217 (20%)

Query: 76  GDRVDSA--LKDMAIVMKQQNRAEEAIE----AIKSLRSRCSDQAQESLDNILLDLYKRC 129
           G    S   L      + +       +     A++         +       L + Y   
Sbjct: 3   GSMEASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLS-AIYSQ-LGNAYFYL 60

Query: 130 GRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQ 189
                 +    H L L +      G +   A++                 GNLG  L   
Sbjct: 61  HDYAKALEYHHHDLTLART----IGDQLGEAKA----------------SGNLGNTLKVL 100

Query: 190 NNYIEAEDAYRRALSIAPDNNK-------MCNLGICLMKQGRIGEAKETLRRVKPAVADG 242
            N+ EA    +R L I+ + N        + NLG     +G+           +      
Sbjct: 101 GNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFP---- 156

Query: 243 PRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSR 279
               D+   A +  ++ L      ++   GDR  Q R
Sbjct: 157 EEVRDALQAAVDFYEENL-----SLVTALGDRAAQGR 188

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 50.4 bits (121), Expect = 9e-07
 Identities = 40/217 (18%), Positives = 69/217 (31%), Gaps = 39/217 (17%)

Query: 36  FHAIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAIN----AGDRVD--SALKDMAIV 89
           +HA  K      P    +  + V    + A+  +   ++     GDR     A  ++   
Sbjct: 137 YHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNT 196

Query: 90  MKQQNRAEEAIEAI-KSL--RSRCSDQAQE--SLDNILLDLYKRCGRLDDQIALLKHKLY 144
                   +A+ A  + L       D+A E  +  N L + Y   G  +      K  L 
Sbjct: 197 HYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSN-LGNAYIFLGEFETASEYYKKTLL 255

Query: 145 LIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALS 204
           L +Q       R   A+S                  +LG       +Y +A D + + L+
Sbjct: 256 LARQ----LKDRAVEAQS----------------CYSLGNTYTLLQDYEKAIDYHLKHLA 295

Query: 205 IAPDNNKM-------CNLGICLMKQGRIGEAKETLRR 234
           IA + N          +LG      G   +A     +
Sbjct: 296 IAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 332

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 30/194 (15%), Positives = 55/194 (28%), Gaps = 43/194 (22%)

Query: 61  DPEKAIPLFWAAIN----AGDRVD--SALKDMAIVMKQQNRAEEAIE------AI-KSLR 107
           +   A+      +      GD+     A  ++          E A E       + + L+
Sbjct: 202 NFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK 261

Query: 108 SRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKF 167
            R + +AQ S  + L + Y      +  I      L + Q+       R    R+     
Sbjct: 262 DR-AVEAQ-SCYS-LGNTYTLLQDYEKAIDYHLKHLAIAQE----LNDRIGEGRA----- 309

Query: 168 QVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIA-------PDNNKMCNLGICLM 220
                        +LG A     N+ +A     + L I+        +     NL    M
Sbjct: 310 -----------CWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQM 358

Query: 221 KQGRIGEAKETLRR 234
             G       ++  
Sbjct: 359 VLGLSYSTNNSIMS 372

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 51.5 bits (124), Expect = 3e-07
 Identities = 40/217 (18%), Positives = 69/217 (31%), Gaps = 39/217 (17%)

Query: 36  FHAIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAIN----AGDRVD--SALKDMAIV 89
           +HA  K      P    +  + V    + A+ L+   ++     GDR     A  ++   
Sbjct: 133 YHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNT 192

Query: 90  MKQQNRAEEAIEAI-KSL--RSRCSDQAQE--SLDNILLDLYKRCGRLDDQIALLKHKLY 144
                   +A+ A  + L       D+A E  +  N L + Y   G  +      K  L 
Sbjct: 193 HYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSN-LGNAYIFLGEFETASEYYKKTLL 251

Query: 145 LIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALS 204
           L +Q       R   A+S                  +LG       +Y +A D + + L+
Sbjct: 252 LARQ----LKDRAVEAQS----------------CYSLGNTYTLLQDYEKAIDYHLKHLA 291

Query: 205 IAPDNNKMC-------NLGICLMKQGRIGEAKETLRR 234
           IA +            +LG      G   +A     +
Sbjct: 292 IAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 328

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 50.3 bits (121), Expect = 6e-07
 Identities = 34/212 (16%), Positives = 59/212 (27%), Gaps = 48/212 (22%)

Query: 82  ALKDMAIVMKQQNRAEEAIEAI-KSLRSRCSDQAQE--SLDNILLDLYKRCGRLDDQIAL 138
            L      + +       +     +++    D           L + Y         +  
Sbjct: 7   ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQ-LGNAYFYLHDYAKALEY 65

Query: 139 LKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDA 198
             H L L +      G +   A++                 GNLG  L    N+ EA   
Sbjct: 66  HHHDLTLART----IGDQLGEAKA----------------SGNLGNTLKVLGNFDEAIVC 105

Query: 199 YRRALSIAPDNNK-------MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLK 251
            +R L I+ + N        + NLG     +G+                D     +    
Sbjct: 106 CQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQ--------DTGEFPEDVRN 157

Query: 252 AYERA----QQMLKDLESEMMNKGGDRVEQSR 279
           A + A    ++ L      ++   GDR  Q R
Sbjct: 158 ALQAAVDLYEENL-----SLVTALGDRAAQGR 184

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 49.1 bits (118), Expect = 2e-06
 Identities = 47/207 (22%), Positives = 73/207 (35%), Gaps = 59/207 (28%)

Query: 61  DPEKAIPLFWAAINAGDRV------DSA--LKDMAIVMKQQNRAEEAIE-AIKSLRSRCS 111
             E A+PL   A+   ++       D A  L  +A+V + QN+ ++A      +L  R  
Sbjct: 42  RYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK 101

Query: 112 -------DQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTK------ 158
                    A  +L+N L  LY + G+  +   L K          A   +         
Sbjct: 102 TLGKDHPAVAA-TLNN-LAVLYGKRGKYKEAEPLCKR---------ALEIREKVLGKDHP 150

Query: 159 -TARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIA-----PDN--- 209
             A+                 L NL      Q  Y E E  Y+RAL I      PD+   
Sbjct: 151 DVAKQ----------------LNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNV 194

Query: 210 -NKMCNLGICLMKQGRIGEAKETLRRV 235
                NL  C +KQG+  +A+   + +
Sbjct: 195 AKTKNNLASCYLKQGKFKQAETLYKEI 221

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 46.4 bits (111), Expect = 1e-05
 Identities = 14/66 (21%), Positives = 20/66 (30%), Gaps = 9/66 (13%)

Query: 179 LGNLGWALMQQNNYIEAEDAYRRALSIA--------PDN-NKMCNLGICLMKQGRIGEAK 229
           L NL      Q  Y  A    ++AL           PD    +  L +    Q +  +A 
Sbjct: 30  LHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAA 89

Query: 230 ETLRRV 235
             L   
Sbjct: 90  NLLNDA 95

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 46.0 bits (110), Expect = 1e-05
 Identities = 10/62 (16%), Positives = 21/62 (33%), Gaps = 10/62 (16%)

Query: 179 LGNLGWALMQQNNYIEAEDAYRRALSIA---------PDNNK-MCNLGICLMKQGRIGEA 228
             NL    ++Q  + +AE  Y+  L+ A          +N     +       +G+  + 
Sbjct: 198 KNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDG 257

Query: 229 KE 230
             
Sbjct: 258 TS 259

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 46.0 bits (110), Expect = 1e-05
 Identities = 28/219 (12%), Positives = 62/219 (28%), Gaps = 56/219 (25%)

Query: 61  DPEKAIPLFWAAINAGDRV------D--SALKDMAIVMKQQNRAEEAIE-AIKSLRSRCS 111
             ++A PL   A+   ++V      D    L ++A++ + Q + EE      ++L    +
Sbjct: 126 KYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185

Query: 112 -------DQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQG 164
                  + A+ + +N L   Y + G+      L K  L    +   F     +      
Sbjct: 186 KLGPDDPNVAK-TKNN-LASCYLKQGKFKQAETLYKEILTRAHER-EFGSVDDENKPI-- 240

Query: 165 KKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIA------PDNNK-MCNLGI 217
                           +       +    +                  P     + NLG 
Sbjct: 241 --------------WMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGA 286

Query: 218 CLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERA 256
              +QG+   A+                    +++ ++ 
Sbjct: 287 LYRRQGKFEAAETLEEAA--------------MRSRKQG 311

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 48.7 bits (117), Expect = 2e-06
 Identities = 18/66 (27%), Positives = 25/66 (37%), Gaps = 9/66 (13%)

Query: 179 LGNLGWALMQQNNYIEAEDAYRRALSIA--------PDN-NKMCNLGICLMKQGRIGEAK 229
           L  L      QN Y EA      AL+I         P     + NL +   K+G+  EA+
Sbjct: 46  LNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAE 105

Query: 230 ETLRRV 235
              +R 
Sbjct: 106 PLCKRA 111

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 48.7 bits (117), Expect = 2e-06
 Identities = 44/173 (25%), Positives = 67/173 (38%), Gaps = 39/173 (22%)

Query: 81  SALKDMAIVMKQQNRAEEAIEA-IKSLRSRCS-------DQAQESLDNILLDLYKRCGRL 132
           + L  +A+V + QN+ +EA      +L  R           A  +L+N L  LY + G+ 
Sbjct: 44  TMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAA-TLNN-LAVLYGKRGKY 101

Query: 133 DDQIALLKHKLYLIQQGLAFNGKR-TKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNN 191
            +   L K  L + ++ L   GK     A+                 L NL      Q  
Sbjct: 102 KEAEPLCKRALEIREKVL---GKFHPDVAKQ----------------LNNLALLCQNQGK 142

Query: 192 YIEAEDAYRRALSIA-----PDN----NKMCNLGICLMKQGRIGEAKETLRRV 235
             E E  YRRAL I      PD+        NL  C +KQG+  +A+   + +
Sbjct: 143 AEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEI 195

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 47.1 bits (113), Expect = 5e-06
 Identities = 11/66 (16%), Positives = 21/66 (31%), Gaps = 10/66 (15%)

Query: 179 LGNLGWALMQQNNYIEAEDAYRRALSIA---------PDN-NKMCNLGICLMKQGRIGEA 228
             NL    ++Q  Y +AE  Y+  L+ A          DN     +       + +  ++
Sbjct: 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDS 231

Query: 229 KETLRR 234
                 
Sbjct: 232 APYGEY 237

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 46.4 bits (111), Expect = 1e-05
 Identities = 31/198 (15%), Positives = 62/198 (31%), Gaps = 42/198 (21%)

Query: 61  DPEKAIPLFWAAINAGDRV------DSA--LKDMAIVMKQQNRAEEAIE-AIKSLRSRCS 111
             ++A PL   A+   ++V      D A  L ++A++ + Q +AEE      ++L    +
Sbjct: 100 KYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYAT 159

Query: 112 -------DQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQG 164
                  + A+ + +N L   Y + G+  D   L K  L    +   F            
Sbjct: 160 RLGPDDPNVAK-TKNN-LASCYLKQGKYQDAETLYKEILTRAHE-KEFGSVNGDNKPI-- 214

Query: 165 KKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIA------PDNNK-MCNLGI 217
                           +       ++   ++                 P  N  + +LG 
Sbjct: 215 --------------WMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGA 260

Query: 218 CLMKQGRIGEAKETLRRV 235
              +QG++  A       
Sbjct: 261 LYRRQGKLEAAHTLEDCA 278

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 44.7 bits (106), Expect = 4e-06
 Identities = 10/52 (19%), Positives = 14/52 (26%), Gaps = 2/52 (3%)

Query: 181 NLGWALMQQNNYIEAEDAYRRALSIAPDNNKMC--NLGICLMKQGRIGEAKE 230
                L+ Q +   A  A    L   P         +G    K G   +A  
Sbjct: 5   KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALN 56

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 46.4 bits (110), Expect = 4e-06
 Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 4/59 (6%)

Query: 181 NLGWALMQQNNYIEAEDAYRRALSIAPDN-NKMCNLGICLM---KQGRIGEAKETLRRV 235
            LG   + QN+Y  +  AYR+AL +  +N      L   L     Q    + +  + + 
Sbjct: 49  LLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKA 107

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292

 Score = 47.3 bits (112), Expect = 5e-06
 Identities = 25/205 (12%), Positives = 51/205 (24%), Gaps = 39/205 (19%)

Query: 49  YVRAKNVQLVDKDPEKAIPLFWAAI----NAGDRVDSA--LKDMAIVMKQQNRAEEAIEA 102
            V+A  +  + K+   A   F  A      AG+  ++     +     K    +  A+++
Sbjct: 40  CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDS 99

Query: 103 IKS-----LRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRT 157
           +++            +       +   L          I   +       Q         
Sbjct: 100 LENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD-------- 151

Query: 158 KTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNKMC---- 213
                            + +              YIEA D Y + +  +  N        
Sbjct: 152 ------------QSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK 199

Query: 214 ----NLGICLMKQGRIGEAKETLRR 234
                 G+C +       A  TL+ 
Sbjct: 200 DYFLKKGLCQLAATDAVAAARTLQE 224

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292

 Score = 40.8 bits (95), Expect = 7e-04
 Identities = 18/129 (13%), Positives = 31/129 (24%), Gaps = 18/129 (13%)

Query: 155 KRTKTARSQGKKFQVSVE---QEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK 211
           K+   +    K F  S     +EA  L          +     A D++ +A         
Sbjct: 13  KKGVPSSGFMKLFSGSDSYKFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGN 72

Query: 212 -------MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLE 264
                        C    G    A ++L           +        + R      +L 
Sbjct: 73  EDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ--------FRRGANFKFELG 124

Query: 265 SEMMNKGGD 273
             + N   D
Sbjct: 125 EILENDLHD 133

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 47.3 bits (112), Expect = 6e-06
 Identities = 30/183 (16%), Positives = 55/183 (30%), Gaps = 29/183 (15%)

Query: 82  ALKDMAIVMKQQNRAEEAIEAIK---SLRSRCSDQAQESLDNILLDLYKRCGRLDDQIAL 138
            ++  A ++    R +EA  + +    + S    Q Q     +L+      G LD+  + 
Sbjct: 137 LVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQ 196

Query: 139 LKHKLYLIQQG-------LAFNGKRTKTARSQGKKFQV-SVEQEATRLLG---------- 180
           L     L+  G          N  R    +  G K    +  +   +             
Sbjct: 197 LNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256

Query: 181 -NLGWALMQQNNYIEAEDAYRRALSIA------PDNNK-MCNLGICLMKQGRIGEAKETL 232
            N+  A +    +  AE         A       D N+ +  L     + GR  +A+  L
Sbjct: 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVL 316

Query: 233 RRV 235
              
Sbjct: 317 LDA 319

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 45.4 bits (107), Expect = 3e-05
 Identities = 28/223 (12%), Positives = 58/223 (26%), Gaps = 44/223 (19%)

Query: 87  AIVMKQQNRAEEAIEAIK---SLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKL 143
           A V       +EA    K            ++    ++L ++    G L   +AL++   
Sbjct: 21  AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTE 80

Query: 144 YLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRAL 203
            + +Q                      V   A   L      L  Q     A +   +A 
Sbjct: 81  QMARQH--------------------DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAF 120

Query: 204 SIAPDNNK---------MCNLGICLMKQGRIGEAKETLRRVKPAV--ADGPRGVDSHLKA 252
            +  + +          +      L    R+ EA+ + R     +      + +      
Sbjct: 121 QLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 180

Query: 253 ---------YERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLG 286
                     + A+  L  LE  ++  G    +     +    
Sbjct: 181 IQCSLARGDLDNARSQLNRLE-NLLGNGKYHSDWISNANKVRV 222

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 41.5 bits (97), Expect = 5e-04
 Identities = 33/231 (14%), Positives = 64/231 (27%), Gaps = 41/231 (17%)

Query: 54  NVQLVDKDPEKAIPLFWAAINAGDRVDS------ALKDMAIVMKQQNRAEEAIE----AI 103
            V     +  +++ L         + D       +L   + ++  Q   + A E    A 
Sbjct: 61  EVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAF 120

Query: 104 KSLRSRCSDQ--AQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTAR 161
           + +  +  +Q    E L  I   L     RLD+  A  +  + ++               
Sbjct: 121 QLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQ----------- 169

Query: 162 SQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDN--------NKMC 213
                      Q+  + L  L    + + +   A     R  ++  +         N   
Sbjct: 170 ----------PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANK 219

Query: 214 NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLE 264
              I     G    A   LR            +    +   RAQ +L + E
Sbjct: 220 VRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFE 270

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176

 Score = 45.7 bits (108), Expect = 7e-06
 Identities = 15/87 (17%), Positives = 30/87 (34%), Gaps = 3/87 (3%)

Query: 185 ALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGP 243
            L+QQ  + +A +  +                  CL++  +   A+E L  +     D  
Sbjct: 15  ELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNS 74

Query: 244 RGVDSHLKAYERAQQMLKDLESEMMNK 270
               S +   E  QQ  +  E + + +
Sbjct: 75  --YKSLIAKLELHQQAAESPELKRLEQ 99

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 44.2 bits (105), Expect = 9e-06
 Identities = 18/101 (17%), Positives = 39/101 (38%), Gaps = 15/101 (14%)

Query: 173 QEATRL--LGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAK 229
           ++A +   LGN      ++ ++  A   Y +A  + P N   + N      ++G   + +
Sbjct: 2   KQALKEKELGN---DAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCR 58

Query: 230 ETLRRVKPAVADGPRGVDSHL---KAYER---AQQMLKDLE 264
           E   +   A+  G    + +    KAY R   +    +  +
Sbjct: 59  ELCEK---AIEVGRENREDYRQIAKAYARIGNSYFKEEKYK 96

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 14/95 (14%), Positives = 39/95 (41%), Gaps = 13/95 (13%)

Query: 178 LLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK--------MCNLGICLMKQGRIGEAK 229
            + N      ++ +Y +  +   +A+ +  +N +           +G    K+ +  +A 
Sbjct: 40  YITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAI 99

Query: 230 ETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLE 264
               +   ++A+        LK  ++A+++LK+ E
Sbjct: 100 HFYNK---SLAEHRT--PDVLKKCQQAEKILKEQE 129

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 4/58 (6%)

Query: 174 EATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNKM-CNLGICLMKQGRIGEAKE 230
           E  +  GN   +L +Q  Y EA   Y + ++  P N     N  + L+K G   +A +
Sbjct: 5   EKQKEQGN---SLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQ 59

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Length = 129

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 4/58 (6%)

Query: 182 LGWALMQQNNYIEAEDAYRRALSIAPDNNK----MCNLGICLMKQGRIGEAKETLRRV 235
           LG +     N+  AE  +R  +S  P ++K    +  LG+    +G+  EA++TL++V
Sbjct: 45  LGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQV 102

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 44.4 bits (106), Expect = 1e-05
 Identities = 31/169 (18%), Positives = 51/169 (30%), Gaps = 35/169 (20%)

Query: 76  GDRVD--SALKDMAIVMKQQNRAEEAIEAI-KSL--RSRCSDQAQE--SLDNILLDLYKR 128
           G R     A  ++           +A+ A  + L       D+A E  +  N+    Y  
Sbjct: 3   GSRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGN-AYIF 61

Query: 129 CGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQ 188
            G  +      K  L L +Q       R   A+S                  +LG     
Sbjct: 62  LGEFETASEYYKKTLLLARQ----LKDRAVEAQS----------------CYSLGNTYTL 101

Query: 189 QNNYIEAEDAYRRALSIAPDNNK-------MCNLGICLMKQGRIGEAKE 230
             +Y +A D + + L+IA +            +LG      G   +A  
Sbjct: 102 LQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH 150

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 46.6 bits (110), Expect = 2e-05
 Identities = 23/221 (10%), Positives = 51/221 (23%), Gaps = 22/221 (9%)

Query: 60  KDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQ--AQES 117
              ++ +P+   A         A+       +     +  +  +        DQ  A  S
Sbjct: 511 ATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIAS 570

Query: 118 LDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQ--------V 169
                  L      +   + +L     L Q  +          ++     +         
Sbjct: 571 NGGGKQAL----ETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAH 626

Query: 170 SVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDN-NKMCNLGICLMKQGRIGEA 228
            +       + +                   +A  + PD    + + G        +   
Sbjct: 627 GLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRL 686

Query: 229 KETLRRV---KP--AVADGPRGVDSHLKAYERAQQMLKDLE 264
              L +         VA          +A E  Q++L  L 
Sbjct: 687 LPVLCQAHGLTQEQVVAIASNNG--GKQALETVQRLLPVLC 725

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 46.6 bits (110), Expect = 2e-05
 Identities = 19/205 (9%), Positives = 43/205 (20%), Gaps = 38/205 (18%)

Query: 60  KDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQ--ES 117
           +  ++ +P+   A         A+       +     +  +  +        DQ     S
Sbjct: 240 ETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIAS 299

Query: 118 LDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATR 177
                  L      +   + +L        Q       +                     
Sbjct: 300 HGGGKQAL----ETVQRLLPVL-------CQAHGLTPDQVVA------------------ 330

Query: 178 LLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRV- 235
            + +                   +A  + PD    + + G        +      L +  
Sbjct: 331 -IASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAH 389

Query: 236 ----KPAVADGPRGVDSHLKAYERA 256
                  VA    G    L+  +R 
Sbjct: 390 GLTPDQVVAIASNGGKQALETVQRL 414

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 44.3 bits (104), Expect = 9e-05
 Identities = 16/186 (8%), Positives = 43/186 (23%), Gaps = 14/186 (7%)

Query: 60  KDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQ--ES 117
           +  ++ +P+   A         A+       +     +  +  +        DQ     S
Sbjct: 308 ETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIAS 367

Query: 118 LDNILLDLYKRCGRLDDQIALLKHKLYL-IQQGLAFNGKRTKTARSQGKKFQVSVEQ--- 173
                  L      +   + +L     L   Q +A      K A    ++    + Q   
Sbjct: 368 NGGGKQAL----ETVQRLLPVLCQAHGLTPDQVVAIASNGGKQALETVQRLLPVLCQAHG 423

Query: 174 ---EATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDN-NKMCNLGICLMKQGRIGEAK 229
              +    + +                   +   + P     + +          + +  
Sbjct: 424 LTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLL 483

Query: 230 ETLRRV 235
             L + 
Sbjct: 484 PVLCQA 489

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 43.5 bits (102), Expect = 2e-04
 Identities = 24/216 (11%), Positives = 53/216 (24%), Gaps = 18/216 (8%)

Query: 63  EKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQ--ESLDN 120
           ++ +P+   A         A+       +     +  +  +         Q     S D 
Sbjct: 582 QRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDG 641

Query: 121 ILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGK-KFQVSVEQEATRL- 178
               L      +   + +L     L    +          ++    +  + V  +A  L 
Sbjct: 642 GKQAL----ETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 697

Query: 179 ------LGNLGWALMQQNNYIEAEDAYRRALSIAPDN-NKMCNLGICLMKQGRIGEAKET 231
                 + +                   +A  + PD    + + G        +      
Sbjct: 698 QEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPV 757

Query: 232 LRRV---KPAVADGPRGVDSHLKAYERAQQMLKDLE 264
           L +     PA            +A E  Q++L  L 
Sbjct: 758 LCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLC 793

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 43.6 bits (103), Expect = 5e-05
 Identities = 17/97 (17%), Positives = 33/97 (34%), Gaps = 13/97 (13%)

Query: 181 NLGWALMQQNNYIEAEDAYRRALSIAPDN-NKMCNLGICLMKQGRIGEA----KETLRRV 235
           N+G       N  EAE A+ R+++            G+   +  +   A    KE L ++
Sbjct: 42  NIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQL 101

Query: 236 KP--AVADGPRGVDSHLKAYE------RAQQMLKDLE 264
           +    +     G+   L A E            ++ +
Sbjct: 102 RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWK 138

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 41.8 bits (99), Expect = 7e-05
 Identities = 17/89 (19%), Positives = 30/89 (33%), Gaps = 11/89 (12%)

Query: 178 LLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNKM-CNLGICLMKQGRIGEAKETLRRV- 235
              N   A  +  NY  A     RA+ I P  +K    +G+ L    +  EA    ++  
Sbjct: 48  YFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKAL 107

Query: 236 --KPAVADGPRGVDSHLKAYERAQQMLKD 262
              P           +    + A+  L++
Sbjct: 108 ELDPDNET-------YKSNLKIAELKLRE 129

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 43.2 bits (101), Expect = 2e-04
 Identities = 9/117 (7%), Positives = 28/117 (23%), Gaps = 5/117 (4%)

Query: 123 LDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQG-----KKFQVSVEQEATR 177
            +L     +   +    + +  L+           +   +           +      + 
Sbjct: 219 SELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSI 278

Query: 178 LLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRR 234
           +      + + +    E+  A    + +         LG     +G   EA +    
Sbjct: 279 IYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLT 335

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 23/102 (22%), Positives = 42/102 (41%), Gaps = 20/102 (19%)

Query: 170 SVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNKM-CNLGICLMKQGRIGEA 228
           S++ E  RL G        ++++  A  AY   +  AP++ +   N    L K     E 
Sbjct: 1   SMKAEEARLEGK---EYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPE- 56

Query: 229 KETLRRVKPAVADGPRGVD---SHLKAYER---AQQMLKDLE 264
                    A+AD  + ++   + ++AY R   AQ  +K+  
Sbjct: 57  ---------AIADCNKAIEKDPNFVRAYIRKATAQIAVKEYA 89

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 39.5 bits (93), Expect = 4e-04
 Identities = 20/111 (18%), Positives = 37/111 (33%), Gaps = 21/111 (18%)

Query: 162 SQGKKFQVSVEQ-EATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNKM-CNLGICL 219
           S  +   ++ E  +  +  GN      ++ +Y  A   Y  A+   P+N  +  N   CL
Sbjct: 1   SNARLAYINPELAQEEKNKGN---EYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACL 57

Query: 220 MKQGRIGEAK---ETLRRVKPAVADGPRGVDSHLKAYER---AQQMLKDLE 264
            K      A    +T  R+              +K Y R       +++  
Sbjct: 58  TKLMEFQRALDDCDTCIRLDS----------KFIKGYIRKAACLVAMREWS 98

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	524
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.95
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.94
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.94
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.93
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.93
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.92
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.92
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.92
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.92
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.92
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.91
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.91
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.91
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.91
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.91
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.9
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.9
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.9
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.9
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.9
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.9
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.9
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.9
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.9
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.89
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.89
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.88
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.88
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.88
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.88
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.88
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.88
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.87
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.87
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.85
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.85
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.85
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.85
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.85
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.85
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.84
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.84
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.84
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.84
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.83
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.83
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.83
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.82
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.82
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.82
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.81
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.81
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.81
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.8
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.8
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.8
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.8
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.8
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.79
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.79
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.79
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.79
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.79
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.79
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.78
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.78
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.78
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.78
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.77
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.77
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.76
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.76
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.75
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.75
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.74
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.74
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.74
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.73
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.72
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.72
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.72
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.71
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.71
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.7
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.69
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.68
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.67
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.66
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.66
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.66
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.66
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.65
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.65
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.64
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.64
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.64
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.64
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.63
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.62
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.62
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.62
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.62
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.62
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.61
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.61
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.61
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.6
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.6
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.6
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.59
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.59
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.58
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.57
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.57
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.57
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.57
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.56
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.56
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.56
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.55
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.55
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.55
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.54
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.54
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.54
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.54
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.53
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.53
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.53
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.53
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.53
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.53
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.52
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.52
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.51
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.51
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.51
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.5
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.5
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.5
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.47
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.47
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.47
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.47
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.47
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.47
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.46
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.46
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.45
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.45
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.45
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.45
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.44
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.44
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.44
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.44
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.44
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.44
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.43
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.42
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.42
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.41
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.41
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.4
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.39
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.39
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.38
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.36
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.36
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.36
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.36
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.35
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.35
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.34
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.34
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.33
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.33
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.33
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.32
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.31
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.27
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.26
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.25
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.25
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.25
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.24
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.16
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.12
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.1
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.05
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.04
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.03
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.03
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.0
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.98
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.97
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.95
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.95
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	98.94
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.89
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.85
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.83
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.82
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.8
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.78
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.66
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.54
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.52
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.46
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.45
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.39
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.38
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.38
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.37
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.31
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	98.27
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.22
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.21
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.2
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.15
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.14
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	98.06
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	97.78
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.41
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.38
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.15
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.0
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	96.93
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	96.82
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	96.71
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	96.68
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	96.61
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.32
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	96.24
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	96.17
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	95.74
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	95.33
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	95.17
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	95.09
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	94.9
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	94.81
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	94.76
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	94.64
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	94.54
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	93.92
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	93.9
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	93.84
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	93.37
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	93.23
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	93.04
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	92.96
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	92.69
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	92.06
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	90.94
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	90.94
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	90.57
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	88.15
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	88.14
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	86.7
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	85.63
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	81.59
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	80.84

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.95  E-value=2.9e-26  Score=217.34  Aligned_cols=199  Identities=17%  Similarity=0.113  Sum_probs=176.9

Q ss_pred             CCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 009850           43 PVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNIL  122 (524)
Q Consensus        43 p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~l  122 (524)
                      |..+.+++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|+++  .++..+
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~--~a~~~l   79 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYL--GGYMVL   79 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH--HHHHHH
Confidence            567788999999999999999999999999999999999999999999999999999999999999999997  788899


Q ss_pred             HHHHHHc-----------CChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 009850          123 LDLYKRC-----------GRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNN  191 (524)
Q Consensus       123 g~~~~~~-----------g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~  191 (524)
                      |.++...           |++++|+..|++++++                          +|+++.+++++|.++...|+
T Consensus        80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------------------------~P~~~~~~~~lg~~~~~~g~  133 (217)
T 2pl2_A           80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--------------------------NPRYAPLHLQRGLVYALLGE  133 (217)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--------------------------CTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--------------------------CcccHHHHHHHHHHHHHcCC
Confidence            9999999           9999999999999999                          99999999999999999999


Q ss_pred             HHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 009850          192 YIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNK  270 (524)
Q Consensus       192 ~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l  270 (524)
                      +++|+..|+++++++ +++. ++++|.++..+|++++|+..|+                     ++++..|+++.++.++
T Consensus       134 ~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~---------------------~al~~~P~~~~~~~~l  191 (217)
T 2pl2_A          134 RDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYA---------------------KALEQAPKDLDLRVRY  191 (217)
T ss_dssp             HHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHH---------------------HHHHHSTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHH---------------------HHHHhCCCChHHHHHH
Confidence            999999999999999 8888 9999999999999999999999                     7889999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHhhcc
Q 009850          271 GGDRVEQSRLFDAFLGSSSIW  291 (524)
Q Consensus       271 g~~~~~~g~~~eAi~~~~~al  291 (524)
                      |.++...|++++|+..|+++-
T Consensus       192 a~~~~~~g~~~~A~~~~~~~~  212 (217)
T 2pl2_A          192 ASALLLKGKAEEAARAAALEH  212 (217)
T ss_dssp             HHHHTC---------------
T ss_pred             HHHHHHccCHHHHHHHHHHHh
Confidence            999999999999999988764

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.94  E-value=1.2e-25  Score=230.57  Aligned_cols=261  Identities=15%  Similarity=0.125  Sum_probs=166.1

Q ss_pred             HHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 009850           38 AIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQES  117 (524)
Q Consensus        38 ~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~  117 (524)
                      ++...|....++..+|.++...|++++|+..++.++..+|.++.++..+|.++...|++++|+..|++++..+|++.  .
T Consensus        25 ~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~  102 (388)
T 1w3b_A           25 LWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFI--D  102 (388)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH--H
T ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchH--H
Confidence            33455666666666666666677777777777766666666666677777777777777777777777666666665  4


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHh--------hh-cccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHH
Q 009850          118 LDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLA--------FN-GKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQ  188 (524)
Q Consensus       118 l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~--------~~-~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~  188 (524)
                      .+..+|.++...|++++|+..|+++++..+....        +. .+..+.+....... +..+|+++.+|.++|.++..
T Consensus       103 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-l~~~p~~~~~~~~l~~~~~~  181 (388)
T 1w3b_A          103 GYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKA-IETQPNFAVAWSNLGCVFNA  181 (388)
T ss_dssp             HHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHH
Confidence            5566666666666666666666666665533221        11 12233332222211 22366666677777777777


Q ss_pred             cCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCC-------------cCHHHHHHHHH
Q 009850          189 QNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGP-------------RGVDSHLKAYE  254 (524)
Q Consensus       189 ~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~-------------~~~~~A~~~~~  254 (524)
                      .|++++|+..|+++++++|++.. ++++|.++...|++++|+..|++++...|...             +++++|+..|+
T Consensus       182 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~  261 (388)
T 1w3b_A          182 QGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYR  261 (388)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            77777777777777777776666 66677777777777777777766665555542             56666667777


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCcc
Q 009850          255 RAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL  301 (524)
Q Consensus       255 ~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~l  301 (524)
                      +++...|+.+.++.++|.++...|++++|+..|+++++..|.+....
T Consensus       262 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  308 (388)
T 1w3b_A          262 RAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSL  308 (388)
T ss_dssp             HHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHH
Confidence            77777777666777777777777777777777777766666655544

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.94  E-value=4.3e-25  Score=226.56  Aligned_cols=262  Identities=22%  Similarity=0.168  Sum_probs=232.0

Q ss_pred             HHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Q 009850           37 HAIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQE  116 (524)
Q Consensus        37 ~~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~  116 (524)
                      .++...|....+|+.+|.++...|++++|+..|++++..+|++..++..+|.++...|++++|+..|++++..+|+..  
T Consensus        58 ~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~--  135 (388)
T 1w3b_A           58 LAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLY--  135 (388)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCT--
T ss_pred             HHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH--
Confidence            455678899999999999999999999999999999999999999999999999999999999999999999999987  


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHh--------hh-cccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHH
Q 009850          117 SLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLA--------FN-GKRTKTARSQGKKFQVSVEQEATRLLGNLGWALM  187 (524)
Q Consensus       117 ~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~--------~~-~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~  187 (524)
                      .++..+|.++...|++++|+..|++++...+....        +. .+....+....+.. +.++|++..++.++|.++.
T Consensus       136 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-l~~~p~~~~~~~~lg~~~~  214 (388)
T 1w3b_A          136 CVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKA-VTLDPNFLDAYINLGNVLK  214 (388)
T ss_dssp             HHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HhcCCCcHHHHHHHHHHHH
Confidence            67788999999999999999999999988654322        11 13333333332222 3458999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCC-------------cCHHHHHHHH
Q 009850          188 QQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGP-------------RGVDSHLKAY  253 (524)
Q Consensus       188 ~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~-------------~~~~~A~~~~  253 (524)
                      ..|++++|+..|++++.++|++.. +.++|.++...|++++|+..|+++....|...             +++++|+..|
T Consensus       215 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~  294 (388)
T 1w3b_A          215 EARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCY  294 (388)
T ss_dssp             TTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            999999999999999999999988 99999999999999999999999987777654             7889999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCcc
Q 009850          254 ERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL  301 (524)
Q Consensus       254 ~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~l  301 (524)
                      ++++...|.+..++.++|.++...|++++|+..|+++++..|.+....
T Consensus       295 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  342 (388)
T 1w3b_A          295 NTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAH  342 (388)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHH
T ss_pred             HHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence            999999999999999999999999999999999999999999877654

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.93  E-value=1.5e-23  Score=208.32  Aligned_cols=232  Identities=12%  Similarity=-0.000  Sum_probs=171.6

Q ss_pred             CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCcHHHHHHH
Q 009850           42 VPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQN-RAEEAIEAIKSLRSRCSDQAQESLDN  120 (524)
Q Consensus        42 ~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g-~~~eAi~~~~~al~~~p~~~~~~l~~  120 (524)
                      .|.....+..++.++...|++++|+..+++++..+|+++.++..+|.++...| ++++|+.+|++++..+|.++  .++.
T Consensus        52 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~  129 (330)
T 3hym_B           52 DPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYG--PAWI  129 (330)
T ss_dssp             CTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCT--HHHH
T ss_pred             CCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccH--HHHH
Confidence            34444444445555555555555555555555555555555555555555555 55555555555555555443  3444


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 009850          121 ILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYR  200 (524)
Q Consensus       121 ~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~  200 (524)
                      .+|.++...|++++|+..|++++..                          .|++..++..+|.++...|++++|+.+|+
T Consensus       130 ~l~~~~~~~~~~~~A~~~~~~a~~~--------------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  183 (330)
T 3hym_B          130 AYGHSFAVESEHDQAMAAYFTAAQL--------------------------MKGCHLPMLYIGLEYGLTNNSKLAERFFS  183 (330)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHH--------------------------TTTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHh--------------------------ccccHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            4555555555555555555555544                          78888899999999999999999999999


Q ss_pred             HHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccc---------cCCC-------------cCHHHHHHHHHHHH
Q 009850          201 RALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAV---------ADGP-------------RGVDSHLKAYERAQ  257 (524)
Q Consensus       201 ~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~---------~~~~-------------~~~~~A~~~~~~al  257 (524)
                      +++..+|++.. ++.+|.++...|++++|+..|+++....         +...             +++++|+..|++++
T Consensus       184 ~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  263 (330)
T 3hym_B          184 QALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQAL  263 (330)
T ss_dssp             HHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            99999999988 9999999999999999999999986654         2211             78899999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCcc
Q 009850          258 QMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL  301 (524)
Q Consensus       258 ~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~l  301 (524)
                      ...|+...++..+|.++...|++++|+..|+++++.+|.+....
T Consensus       264 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  307 (330)
T 3hym_B          264 VLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSV  307 (330)
T ss_dssp             HHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHH
T ss_pred             hhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHH
Confidence            99999999999999999999999999999999999999887754

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.93  E-value=1.4e-24  Score=220.72  Aligned_cols=230  Identities=17%  Similarity=0.089  Sum_probs=194.6

Q ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 009850           46 DTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDL  125 (524)
Q Consensus        46 ~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~  125 (524)
                      ...|+.+|..++..|++++|+.+|++++..+|++..++..+|.++...|++++|+..|++++.++|++.  .++..+|.+
T Consensus        65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~l~~~  142 (365)
T 4eqf_A           65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNL--KALMALAVS  142 (365)
T ss_dssp             CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHH
T ss_pred             hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH--HHHHHHHHH
Confidence            445999999999999999999999999999999999999999999999999999999999999999987  788999999


Q ss_pred             HHHcCChHHHHHHHHHHHHHhhccH------------------hhhc-ccHHHHHHHhHHHHHhcCCC--cHHHHHHHHH
Q 009850          126 YKRCGRLDDQIALLKHKLYLIQQGL------------------AFNG-KRTKTARSQGKKFQVSVEQE--ATRLLGNLGW  184 (524)
Q Consensus       126 ~~~~g~~~eA~~~~~~al~l~~~~~------------------~~~~-~~~~~a~~~~~~~~~~~~p~--~~~a~~~Lg~  184 (524)
                      |...|++++|+..|++++.+.+...                  .+.. +..+.+....+.. +..+|+  ++.+++++|.
T Consensus       143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-l~~~p~~~~~~~~~~l~~  221 (365)
T 4eqf_A          143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEA-AHQNGDMIDPDLQTGLGV  221 (365)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHH-HHHSCSSCCHHHHHHHHH
T ss_pred             HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHH-HHhCcCccCHHHHHHHHH
Confidence            9999999999999999999864321                  1111 2233333332221 334677  7888888888


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCC
Q 009850          185 ALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDL  263 (524)
Q Consensus       185 ~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~  263 (524)
                      ++...|++++|+.+|+++++++|++.. |+++|.++..+|++++|+.+|+                     +++...|+.
T Consensus       222 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~---------------------~al~~~p~~  280 (365)
T 4eqf_A          222 LFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYT---------------------RALEIQPGF  280 (365)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH---------------------HHHHHCTTC
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH---------------------HHHhcCCCc
Confidence            888888888888888888888888877 8888888888888888888888                     788889999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCC
Q 009850          264 ESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  299 (524)
Q Consensus       264 ~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~  299 (524)
                      ..+++++|.++..+|++++|+..|+++++..|....
T Consensus       281 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  316 (365)
T 4eqf_A          281 IRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRN  316 (365)
T ss_dssp             HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC--
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCC
Confidence            999999999999999999999999999999887554

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.92  E-value=3e-24  Score=221.18  Aligned_cols=226  Identities=11%  Similarity=0.001  Sum_probs=189.0

Q ss_pred             CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 009850           44 VGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNR-AEEAIEAIKSLRSRCSDQAQESLDNIL  122 (524)
Q Consensus        44 ~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~-~~eAi~~~~~al~~~p~~~~~~l~~~l  122 (524)
                      ...++|+.+|.++...|++++|+..|++++.++|++..+|+.+|.++..+|+ +++|+..|++++.++|++.  .+|+.+
T Consensus        95 ~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~--~a~~~~  172 (382)
T 2h6f_A           95 KFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNY--QVWHHR  172 (382)
T ss_dssp             HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH--HHHHHH
T ss_pred             hhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCH--HHHHHH
Confidence            3467899999999999999999999999999999999999999999999997 9999999999999999997  788999


Q ss_pred             HHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009850          123 LDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRA  202 (524)
Q Consensus       123 g~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~A  202 (524)
                      |.++..+|++++|+.+|++++++                          +|++..+|+++|.++...|++++|+.+|+++
T Consensus       173 g~~~~~~g~~~eAl~~~~kal~l--------------------------dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~a  226 (382)
T 2h6f_A          173 RVLVEWLRDPSQELEFIADILNQ--------------------------DAKNYHAWQHRQWVIQEFKLWDNELQYVDQL  226 (382)
T ss_dssp             HHHHHHHTCCTTHHHHHHHHHHH--------------------------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHH
T ss_pred             HHHHHHccCHHHHHHHHHHHHHh--------------------------CccCHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            99999999999999999999999                          9999999999999999999999999999999


Q ss_pred             HhhCCCcHH-HHHHHHHHHH-cCCHHHHH-----HHHHHhcccccCCC-------------c--CHHHHHHHHHHHHHhC
Q 009850          203 LSIAPDNNK-MCNLGICLMK-QGRIGEAK-----ETLRRVKPAVADGP-------------R--GVDSHLKAYERAQQML  260 (524)
Q Consensus       203 l~l~P~~~~-~~~Lg~~~~~-~G~~~eA~-----~~~~~a~~~~~~~~-------------~--~~~~A~~~~~~al~~~  260 (524)
                      ++++|++.. |+++|.++.. .|.+++|+     .+|++++...|+..             +  .+++++..+.++ ...
T Consensus       227 l~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~  305 (382)
T 2h6f_A          227 LKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS  305 (382)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT
T ss_pred             HHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC
Confidence            999999999 9999999999 56557774     66776655554442             1  245555555555 556


Q ss_pred             CCCHHHHHHHHHHHHHcC---------CHHHHHHHHhhc-ccCCCCCC
Q 009850          261 KDLESEMMNKGGDRVEQS---------RLFDAFLGSSSI-WQPQPCKD  298 (524)
Q Consensus       261 p~~~~a~~~lg~~~~~~g---------~~~eAi~~~~~a-l~~~P~~~  298 (524)
                      |+...++..+|.+|..+|         .+++|+..|+++ .+.+|...
T Consensus       306 p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~  353 (382)
T 2h6f_A          306 HSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRK  353 (382)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGH
T ss_pred             CCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhH
Confidence            666666666666666653         135666666666 56665443

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.92  E-value=3.1e-23  Score=208.11  Aligned_cols=232  Identities=13%  Similarity=0.072  Sum_probs=120.8

Q ss_pred             hcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CcHHH
Q 009850           40 HKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCS---DQAQE  116 (524)
Q Consensus        40 ~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p---~~~~~  116 (524)
                      ...|..+.+++.+|.++...|++++|+..|++++..+|++..++..+|.++...|++++|+..|++++..+|   ++.  
T Consensus        31 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--  108 (359)
T 3ieg_A           31 DGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEK--  108 (359)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHH--
T ss_pred             hhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChH--
Confidence            334455555555555555555555555555555555555555555555555555555555555555555555   333  


Q ss_pred             HHHHHH------------HHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHH
Q 009850          117 SLDNIL------------LDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGW  184 (524)
Q Consensus       117 ~l~~~l------------g~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~  184 (524)
                      ..+..+            |.++...|++++|+..|++++..                          +|+++.++..+|.
T Consensus       109 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------------------------~~~~~~~~~~~~~  162 (359)
T 3ieg_A          109 EAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV--------------------------CVWDAELRELRAE  162 (359)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------------CTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------------------------CCCchHHHHHHHH
Confidence            222222            44555555555555555555554                          4555555555555


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCC--------------------
Q 009850          185 ALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGP--------------------  243 (524)
Q Consensus       185 ~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~--------------------  243 (524)
                      ++...|++++|+..|++++...|+++. ++.+|.++...|++++|+..|+++....+...                    
T Consensus       163 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~  242 (359)
T 3ieg_A          163 CFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAE  242 (359)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHH
Confidence            555555555555555555555555555 55555555555555555555555544333321                    


Q ss_pred             -----cCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCC
Q 009850          244 -----RGVDSHLKAYERAQQMLKDLES----EMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  299 (524)
Q Consensus       244 -----~~~~~A~~~~~~al~~~p~~~~----a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~  299 (524)
                           +++++|+..+++++...|+...    ++..+|.++...|++++|+..|+++++.+|.+..
T Consensus       243 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~  307 (359)
T 3ieg_A          243 ELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVN  307 (359)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHH
Confidence                 3444455555555555555442    2334455555555555555555555555554443

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.92  E-value=1.2e-22  Score=203.76  Aligned_cols=243  Identities=13%  Similarity=0.099  Sum_probs=221.6

Q ss_pred             hhhhhHH-HHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC---CcHHHHHHH------------HHHHHHcC
Q 009850           31 TRSDSFH-AIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGD---RVDSALKDM------------AIVMKQQN   94 (524)
Q Consensus        31 ~~~~~~~-~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p---~~~~a~~~L------------a~~~~~~g   94 (524)
                      .+...+. ++...|....+|+.+|.++...|++++|+..|++++..+|   ++..++..+            |.++...|
T Consensus        55 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  134 (359)
T 3ieg_A           55 AALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGA  134 (359)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            3444443 4456788899999999999999999999999999999999   999999888            79999999


Q ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCC
Q 009850           95 RAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQE  174 (524)
Q Consensus        95 ~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~  174 (524)
                      ++++|+..+++++...|.++  .++..+|.++...|++++|+..|++++..                          +|.
T Consensus       135 ~~~~A~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------------------------~~~  186 (359)
T 3ieg_A          135 DYTAAITFLDKILEVCVWDA--ELRELRAECFIKEGEPRKAISDLKAASKL--------------------------KSD  186 (359)
T ss_dssp             CHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------------------------CSC
T ss_pred             CHHHHHHHHHHHHHhCCCch--HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------------------------CCC
Confidence            99999999999999999987  77889999999999999999999999988                          899


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HH------------HHHHHHHHcCCHHHHHHHHHHhcccccC
Q 009850          175 ATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MC------------NLGICLMKQGRIGEAKETLRRVKPAVAD  241 (524)
Q Consensus       175 ~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~------------~Lg~~~~~~G~~~eA~~~~~~a~~~~~~  241 (524)
                      ++.+++.+|.++...|++++|+..|+++++..|++.. +.            .+|.++...|++++|+..|+++....+.
T Consensus       187 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~  266 (359)
T 3ieg_A          187 NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS  266 (359)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence            9999999999999999999999999999999999877 43            4488999999999999999999877776


Q ss_pred             CC-----------------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCcc
Q 009850          242 GP-----------------RGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL  301 (524)
Q Consensus       242 ~~-----------------~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~l  301 (524)
                      ..                 +++++|+..|++++...|+.+.+++.+|.++...|++++|+..|+++++.+|.+....
T Consensus       267 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~  343 (359)
T 3ieg_A          267 VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIR  343 (359)
T ss_dssp             SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred             chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHH
Confidence            52                 7789999999999999999999999999999999999999999999999999876643

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.92  E-value=1.3e-23  Score=208.71  Aligned_cols=234  Identities=13%  Similarity=0.019  Sum_probs=217.4

Q ss_pred             hcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 009850           40 HKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLD  119 (524)
Q Consensus        40 ~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~  119 (524)
                      ..++.+.+.++.+|..++..|++++|+..|++++..+|.+..++..++.++...|++++|+..+++++..+|+++  .++
T Consensus        16 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~   93 (330)
T 3hym_B           16 DGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNP--VSW   93 (330)
T ss_dssp             ----CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST--HHH
T ss_pred             hhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCH--HHH
Confidence            445666777999999999999999999999999999999999999999999999999999999999999999987  778


Q ss_pred             HHHHHHHHHcC-ChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 009850          120 NILLDLYKRCG-RLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDA  198 (524)
Q Consensus       120 ~~lg~~~~~~g-~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~  198 (524)
                      ..+|.++...| ++++|+.+|++++..                          +|.++.++..+|.++...|++++|+..
T Consensus        94 ~~l~~~~~~~~~~~~~A~~~~~~a~~~--------------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~  147 (330)
T 3hym_B           94 FAVGCYYLMVGHKNEHARRYLSKATTL--------------------------EKTYGPAWIAYGHSFAVESEHDQAMAA  147 (330)
T ss_dssp             HHHHHHHHHSCSCHHHHHHHHHHHHTT--------------------------CTTCTHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHh--------------------------CCccHHHHHHHHHHHHHccCHHHHHHH
Confidence            89999999999 999999999999988                          899999999999999999999999999


Q ss_pred             HHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCC-------------cCHHHHHHHHHHHHHhC----
Q 009850          199 YRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGP-------------RGVDSHLKAYERAQQML----  260 (524)
Q Consensus       199 ~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~-------------~~~~~A~~~~~~al~~~----  260 (524)
                      |++++...|++.. +..+|.++...|++++|+..|++++...+...             +++++|+..+++++...    
T Consensus       148 ~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~  227 (330)
T 3hym_B          148 YFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIG  227 (330)
T ss_dssp             HHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTS
T ss_pred             HHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcc
Confidence            9999999999888 88999999999999999999999988887764             78899999999999987    


Q ss_pred             -----CCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCcc
Q 009850          261 -----KDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL  301 (524)
Q Consensus       261 -----p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~l  301 (524)
                           |....++.++|.++...|++++|+..|+++++.+|.+....
T Consensus       228 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  273 (330)
T 3hym_B          228 NEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTY  273 (330)
T ss_dssp             CSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHH
T ss_pred             ccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHH
Confidence                 77788999999999999999999999999999999887755

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.92  E-value=1.1e-22  Score=211.94  Aligned_cols=260  Identities=13%  Similarity=0.099  Sum_probs=178.8

Q ss_pred             hcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---HH
Q 009850           40 HKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQA---QE  116 (524)
Q Consensus        40 ~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~---~~  116 (524)
                      ...|....+|+.+|.++...|++++|+..|+++++.+|++..++..+|.+|..+|++++|+..|++++..+|++.   ..
T Consensus        54 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  133 (450)
T 2y4t_A           54 DGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEA  133 (450)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHH
T ss_pred             HhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHH
Confidence            345566666667777777777777777777777777777666777777777777777777777777776666543   11


Q ss_pred             H----------HHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhh---------cccHHHH-HHHhHHHHHhcCCCcH
Q 009850          117 S----------LDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFN---------GKRTKTA-RSQGKKFQVSVEQEAT  176 (524)
Q Consensus       117 ~----------l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~---------~~~~~~a-~~~~~~~~~~~~p~~~  176 (524)
                      .          ....+|.++...|++++|+..|++++...+......         .+..+.+ ..+.+.  +..+|+++
T Consensus       134 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~  211 (450)
T 2y4t_A          134 QSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAA--SKLKNDNT  211 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHH--HHHHCSCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHH--HHhCCCCH
Confidence            1          122335556666777777777776666543322111         1111111 111111  23367788


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHH------------HHHHHHcCCHHHHHHHHHHhcccccCCC
Q 009850          177 RLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNL------------GICLMKQGRIGEAKETLRRVKPAVADGP  243 (524)
Q Consensus       177 ~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~L------------g~~~~~~G~~~eA~~~~~~a~~~~~~~~  243 (524)
                      .+++.+|.++...|++++|+..|++++.++|++.. +..+            |.++...|++++|+..|++++...|...
T Consensus       212 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~  291 (450)
T 2y4t_A          212 EAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIA  291 (450)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcch
Confidence            88888888888888888888888888888888776 5444            8888888888888888888876666531


Q ss_pred             -----------------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCcc
Q 009850          244 -----------------RGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL  301 (524)
Q Consensus       244 -----------------~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~l  301 (524)
                                       +++++|+..+++++...|+...++..+|.++...|++++|+..|+++++.+|.+....
T Consensus       292 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  366 (450)
T 2y4t_A          292 EYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIR  366 (450)
T ss_dssp             HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHH
Confidence                             6778888888888888888888888888888888888888888888888888876543

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.91  E-value=1.5e-22  Score=205.04  Aligned_cols=228  Identities=16%  Similarity=0.097  Sum_probs=184.2

Q ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 009850           46 DTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDL  125 (524)
Q Consensus        46 ~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~  125 (524)
                      ...++.+|.+++..|++++|+..|+++++.+|++..++..+|.++...|++++|+..|++++..+|+++  .++..+|.+
T Consensus        64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~l~~~  141 (368)
T 1fch_A           64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQ--TALMALAVS  141 (368)
T ss_dssp             CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCH--HHHHHHHHH
Confidence            456899999999999999999999999999999999999999999999999999999999999999987  788899999


Q ss_pred             HHHcCChHHHHHHHHHHHHHhhccHhhh------------------------cccHHHHHHHhHHHHHhcCCC--cHHHH
Q 009850          126 YKRCGRLDDQIALLKHKLYLIQQGLAFN------------------------GKRTKTARSQGKKFQVSVEQE--ATRLL  179 (524)
Q Consensus       126 ~~~~g~~~eA~~~~~~al~l~~~~~~~~------------------------~~~~~~a~~~~~~~~~~~~p~--~~~a~  179 (524)
                      |...|++++|+..|++++...+......                        .+..+.+....... +..+|.  ++.++
T Consensus       142 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a-~~~~p~~~~~~~~  220 (368)
T 1fch_A          142 FTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAA-VRLDPTSIDPDVQ  220 (368)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHH-HHHSTTSCCHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHH-HHhCcCcccHHHH
Confidence            9999999999999999998764332211                        12222222222211 344777  78899


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHH
Q 009850          180 GNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQ  258 (524)
Q Consensus       180 ~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~  258 (524)
                      ..+|.++...|++++|+.+|++++.++|+++. ++++|.++...|++++|+..|+                     +++.
T Consensus       221 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~---------------------~al~  279 (368)
T 1fch_A          221 CGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYR---------------------RALE  279 (368)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH---------------------HHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHH---------------------HHHH
Confidence            99999999999999999999999999999888 8899999999999999999988                     5555


Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCC
Q 009850          259 MLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCK  297 (524)
Q Consensus       259 ~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~  297 (524)
                      ..|+...++.++|.++...|++++|+..|++++...|.+
T Consensus       280 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  318 (368)
T 1fch_A          280 LQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS  318 (368)
T ss_dssp             HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred             hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            566666666666666666666666666666666665554

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.91  E-value=7.3e-23  Score=195.99  Aligned_cols=226  Identities=13%  Similarity=0.114  Sum_probs=199.8

Q ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-----HHHHHH
Q 009850           46 DTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQA-----QESLDN  120 (524)
Q Consensus        46 ~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~-----~~~l~~  120 (524)
                      .+.|+.+|.+++..|++++|+.+|+++++.+ .++.++..+|.++...|++++|+..+++++...|+..     ...++.
T Consensus         5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~   83 (258)
T 3uq3_A            5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA   83 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence            4679999999999999999999999999999 9999999999999999999999999999999988541     137888


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhc-ccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 009850          121 ILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNG-KRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAY  199 (524)
Q Consensus       121 ~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~-~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~  199 (524)
                      .+|.+|...|++++|+..|++++.+.+.+..+.. +..+.+...... ....+|.++.++..+|.++...|++++|+.+|
T Consensus        84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~  162 (258)
T 3uq3_A           84 RIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEA-EAYVNPEKAEEARLEGKEYFTKSDWPNAVKAY  162 (258)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH-HHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHH-HHHcCcchHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            9999999999999999999999998766544333 223333222222 23457888999999999999999999999999


Q ss_pred             HHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 009850          200 RRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQS  278 (524)
Q Consensus       200 ~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g  278 (524)
                      ++++..+|+++. ++++|.++...|++++|+.+|+                     +++...|+...++..+|.++..+|
T Consensus       163 ~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~---------------------~al~~~~~~~~~~~~l~~~~~~~g  221 (258)
T 3uq3_A          163 TEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCN---------------------KAIEKDPNFVRAYIRKATAQIAVK  221 (258)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH---------------------HHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHH---------------------HHHHhCHHHHHHHHHHHHHHHHHh
Confidence            999999999999 9999999999999999999999                     778889999999999999999999


Q ss_pred             CHHHHHHHHhhcccCC
Q 009850          279 RLFDAFLGSSSIWQPQ  294 (524)
Q Consensus       279 ~~~eAi~~~~~al~~~  294 (524)
                      ++++|+..|+++++.+
T Consensus       222 ~~~~A~~~~~~a~~~~  237 (258)
T 3uq3_A          222 EYASALETLDAARTKD  237 (258)
T ss_dssp             CHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhC
Confidence            9999999999999998

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.91  E-value=7.4e-23  Score=187.35  Aligned_cols=165  Identities=18%  Similarity=0.160  Sum_probs=157.5

Q ss_pred             CCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 009850           43 PVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNIL  122 (524)
Q Consensus        43 p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~l  122 (524)
                      +..+..|+++|.++...|++++|+..|+++++.+|+++.++..+|.+|..+|++++|+..+++++...|++.  .++..+
T Consensus         2 ge~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~   79 (184)
T 3vtx_A            2 GETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSA--EAYYIL   79 (184)
T ss_dssp             --CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCH--HHHHHH
T ss_pred             CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhH--HHHHHH
Confidence            556788999999999999999999999999999999999999999999999999999999999999999997  677888


Q ss_pred             HHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009850          123 LDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRA  202 (524)
Q Consensus       123 g~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~A  202 (524)
                      |.++...++++.|+..+.+++.+                          +|.+..++..+|.++...|++++|+..|+++
T Consensus        80 ~~~~~~~~~~~~a~~~~~~a~~~--------------------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~  133 (184)
T 3vtx_A           80 GSANFMIDEKQAAIDALQRAIAL--------------------------NTVYADAYYKLGLVYDSMGEHDKAIEAYEKT  133 (184)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH--------------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHh--------------------------CccchHHHHHHHHHHHHhCCchhHHHHHHHH
Confidence            99999999999999999999998                          8999999999999999999999999999999


Q ss_pred             HhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHh
Q 009850          203 LSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRV  235 (524)
Q Consensus       203 l~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a  235 (524)
                      ++++|+++. |+++|.+|..+|++++|+.+|+++
T Consensus       134 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  167 (184)
T 3vtx_A          134 ISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKA  167 (184)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            999999999 999999999999999999999943

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.91  E-value=4.5e-22  Score=197.38  Aligned_cols=249  Identities=18%  Similarity=0.076  Sum_probs=211.3

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 009850           47 TPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLY  126 (524)
Q Consensus        47 ~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~  126 (524)
                      ..++.+|..++..|++++|+..|++++..+|++..++..+|.++...|++++|+..+++++..+|++.  .++..+|.+|
T Consensus        22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~la~~~   99 (327)
T 3cv0_A           22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI--AVHAALAVSH   99 (327)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCH--HHHHHHHHHH
Confidence            34899999999999999999999999999999999999999999999999999999999999999887  6778899999


Q ss_pred             HHcCChHHHHHHHHHHHHHhhccHh-----------------------h-hcccHHHHHHHhHHHHHhcCCCcHHHHHHH
Q 009850          127 KRCGRLDDQIALLKHKLYLIQQGLA-----------------------F-NGKRTKTARSQGKKFQVSVEQEATRLLGNL  182 (524)
Q Consensus       127 ~~~g~~~eA~~~~~~al~l~~~~~~-----------------------~-~~~~~~~a~~~~~~~~~~~~p~~~~a~~~L  182 (524)
                      ...|++++|+..|++++...+....                       + ..+..+.+....... ...+|.++.++..+
T Consensus       100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~~~l  178 (327)
T 3cv0_A          100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAA-LEMNPNDAQLHASL  178 (327)
T ss_dssp             HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHH-HHHSTTCHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHH-HhhCCCCHHHHHHH
Confidence            9999999999999999987643221                       1 112233333322221 34479999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCC-------------cCHHH
Q 009850          183 GWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGP-------------RGVDS  248 (524)
Q Consensus       183 g~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~-------------~~~~~  248 (524)
                      |.++...|++++|+.+|++++..+|++.. +..+|.++...|++++|+..|+++....+...             +++++
T Consensus       179 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~  258 (327)
T 3cv0_A          179 GVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDL  258 (327)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHH
Confidence            99999999999999999999999999998 99999999999999999999998877666653             67788


Q ss_pred             HHHHHHHHHHhCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCC
Q 009850          249 HLKAYERAQQMLKD------------LESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKD  298 (524)
Q Consensus       249 A~~~~~~al~~~p~------------~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~  298 (524)
                      |+..|++++...|+            ...++..+|.++...|++++|...+++++...|...
T Consensus       259 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~  320 (327)
T 3cv0_A          259 AAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKEF  320 (327)
T ss_dssp             HHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHHHT
T ss_pred             HHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchhh
Confidence            88888888888888            778888888888888888888888888876655443

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.91  E-value=2.8e-23  Score=201.51  Aligned_cols=229  Identities=11%  Similarity=0.044  Sum_probs=199.4

Q ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH--HHHHHHHHH
Q 009850           46 DTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQA--QESLDNILL  123 (524)
Q Consensus        46 ~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~--~~~l~~~lg  123 (524)
                      ++.++..|.+++..|++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++. .|.++  ....+..+|
T Consensus         3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg   81 (272)
T 3u4t_A            3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYG   81 (272)
T ss_dssp             --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHH
Confidence            355889999999999999999999999999999999999999999999999999999999999 44332  135678999


Q ss_pred             HHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009850          124 DLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRAL  203 (524)
Q Consensus       124 ~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al  203 (524)
                      .+|...|++++|+..|+++++.                          +|.++.++..+|.++...|++++|+.+|++++
T Consensus        82 ~~~~~~~~~~~A~~~~~~a~~~--------------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al  135 (272)
T 3u4t_A           82 KILMKKGQDSLAIQQYQAAVDR--------------------------DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQI  135 (272)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH--------------------------STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGC
T ss_pred             HHHHHcccHHHHHHHHHHHHhc--------------------------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence            9999999999999999999998                          88999999999999999999999999999999


Q ss_pred             hhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCC-------------cC---HHHHHHHHHHHHHhC---CC-
Q 009850          204 SIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGP-------------RG---VDSHLKAYERAQQML---KD-  262 (524)
Q Consensus       204 ~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~-------------~~---~~~A~~~~~~al~~~---p~-  262 (524)
                      +++|.+.. |+++|......+++++|+..|++++...|...             +.   .+.|+..|+++++..   |+ 
T Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~  215 (272)
T 3u4t_A          136 RPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAK  215 (272)
T ss_dssp             CSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGG
T ss_pred             hcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhccccc
Confidence            99999988 99999445555699999999999988777753             23   556788888888886   54 


Q ss_pred             ----CHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCcc
Q 009850          263 ----LESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL  301 (524)
Q Consensus       263 ----~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~l  301 (524)
                          ...++..+|.+|...|++++|+..|++++..+|.+....
T Consensus       216 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~  258 (272)
T 3u4t_A          216 YKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAI  258 (272)
T ss_dssp             GHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHH
Confidence                346899999999999999999999999999999987644

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.90  E-value=1.1e-22  Score=193.28  Aligned_cols=208  Identities=17%  Similarity=0.095  Sum_probs=180.0

Q ss_pred             ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 009850           45 GDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLD  124 (524)
Q Consensus        45 ~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~  124 (524)
                      .+..|+.+|..++..|++++|+.+|++++..+|++..++..+|.++...|++++|+..|++++..+|.+.  .++..+|.
T Consensus        22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~la~   99 (243)
T 2q7f_A           22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAA--TAYYGAGN   99 (243)
T ss_dssp             --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcch--HHHHHHHH
Confidence            3445899999999999999999999999999999999999999999999999999999999999999887  77889999


Q ss_pred             HHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009850          125 LYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALS  204 (524)
Q Consensus       125 ~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~  204 (524)
                      ++...|++++|+..|+++++.                          +|.+..++..+|.++...|++++|+..|++++.
T Consensus       100 ~~~~~~~~~~A~~~~~~~~~~--------------------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~  153 (243)
T 2q7f_A          100 VYVVKEMYKEAKDMFEKALRA--------------------------GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVE  153 (243)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH--------------------------TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred             HHHHhccHHHHHHHHHHHHHh--------------------------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            999999999999999999998                          899999999999999999999999999999999


Q ss_pred             hCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 009850          205 IAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDA  283 (524)
Q Consensus       205 l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA  283 (524)
                      ..|++.. +..+|.++...|++++|+..|+                     +++...|+...++..+|.++...|++++|
T Consensus       154 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~---------------------~~~~~~~~~~~~~~~la~~~~~~~~~~~A  212 (243)
T 2q7f_A          154 LNENDTEARFQFGMCLANEGMLDEALSQFA---------------------AVTEQDPGHADAFYNAGVTYAYKENREKA  212 (243)
T ss_dssp             HCTTCHHHHHHHHHHHHHHTCCHHHHHHHH---------------------HHHHHCTTCHHHHHHHHHHHHHTTCTTHH
T ss_pred             hCCccHHHHHHHHHHHHHcCCHHHHHHHHH---------------------HHHHhCcccHHHHHHHHHHHHHccCHHHH
Confidence            9999998 9999999999999999999999                     77888899999999999999999999999


Q ss_pred             HHHHhhcccCCCCCCCcc
Q 009850          284 FLGSSSIWQPQPCKDHIL  301 (524)
Q Consensus       284 i~~~~~al~~~P~~~~~l  301 (524)
                      +..|+++++.+|.+....
T Consensus       213 ~~~~~~~~~~~p~~~~~~  230 (243)
T 2q7f_A          213 LEMLDKAIDIQPDHMLAL  230 (243)
T ss_dssp             HHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHccCcchHHHH
Confidence            999999999999887644

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.90  E-value=9.9e-23  Score=206.93  Aligned_cols=252  Identities=16%  Similarity=0.054  Sum_probs=192.2

Q ss_pred             hhhhhHH-HHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 009850           31 TRSDSFH-AIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSR  109 (524)
Q Consensus        31 ~~~~~~~-~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~  109 (524)
                      .+...+. ++...|....+|+.+|.++...|++++|+..|++++..+|++..++..+|.+|..+|++++|+..|++++.+
T Consensus        83 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  162 (365)
T 4eqf_A           83 VTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQ  162 (365)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHh
Confidence            3444443 445678899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcHH--------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhc--cHh--------hh-cccHHHHHHHhHHHHHh
Q 009850          110 CSDQAQ--------ESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQ--GLA--------FN-GKRTKTARSQGKKFQVS  170 (524)
Q Consensus       110 ~p~~~~--------~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~--~~~--------~~-~~~~~~a~~~~~~~~~~  170 (524)
                      .|++..        ..+...+|.++...|++++|+.+|++++.+.+.  ...        +. .+..+.+....+.. +.
T Consensus       163 ~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-l~  241 (365)
T 4eqf_A          163 NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAA-LT  241 (365)
T ss_dssp             CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHH-HH
T ss_pred             CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHH-HH
Confidence            987541        122335688999999999999999999998765  221        11 13344443333222 34


Q ss_pred             cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHH
Q 009850          171 VEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSH  249 (524)
Q Consensus       171 ~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A  249 (524)
                      .+|+++.+|+++|.++...|++++|+.+|+++++++|++.. ++++|.++..+|++++|+.+|++++...+...+..   
T Consensus       242 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---  318 (365)
T 4eqf_A          242 VRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQ---  318 (365)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC-------
T ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCc---
Confidence            48999999999999999999999999999999999999998 99999999999999999999996654443322110   


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhccc
Q 009850          250 LKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQ  292 (524)
Q Consensus       250 ~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~  292 (524)
                            ..........+|..+|.++..+|+.+.+..+..+.+.
T Consensus       319 ------~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~  355 (365)
T 4eqf_A          319 ------QVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLD  355 (365)
T ss_dssp             --------------CHHHHHHHHHHHHHTCHHHHHHHHTTCCG
T ss_pred             ------ccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHH
Confidence                  0000111356899999999999999999988776543

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.90  E-value=2.2e-23  Score=230.92  Aligned_cols=163  Identities=20%  Similarity=0.246  Sum_probs=80.9

Q ss_pred             CCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 009850           43 PVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNIL  122 (524)
Q Consensus        43 p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~l  122 (524)
                      |..+++|++||.++..+|++++|+.+|+++++++|++..++++||.+|..+|++++|+.+|+++++++|+++  .+++.+
T Consensus         6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~--~a~~nL   83 (723)
T 4gyw_A            6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFA--DAYSNM   83 (723)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHH
Confidence            334444455555555555555555555555555555555555555555555555555555555555555444  344444


Q ss_pred             HHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009850          123 LDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRA  202 (524)
Q Consensus       123 g~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~A  202 (524)
                      |.+|..+|++++|+..|++++++                          +|+++.+|+++|.+|..+|++++|+.+|+++
T Consensus        84 g~~l~~~g~~~~A~~~~~kAl~l--------------------------~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~A  137 (723)
T 4gyw_A           84 GNTLKEMQDVQGALQCYTRAIQI--------------------------NPAFADAHSNLASIHKDSGNIPEAIASYRTA  137 (723)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH--------------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHh--------------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            44555555555555555554444                          4444445555555555555555555555555


Q ss_pred             HhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHH
Q 009850          203 LSIAPDNNK-MCNLGICLMKQGRIGEAKETLR  233 (524)
Q Consensus       203 l~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~  233 (524)
                      ++++|++.. ++++|.++..+|++++|++.|+
T Consensus       138 l~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~  169 (723)
T 4gyw_A          138 LKLKPDFPDAYCNLAHCLQIVCDWTDYDERMK  169 (723)
T ss_dssp             HHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHH
T ss_pred             HHhCCCChHHHhhhhhHHHhcccHHHHHHHHH
Confidence            555554444 4445555555555444444444

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.90  E-value=4.7e-22  Score=215.11  Aligned_cols=272  Identities=10%  Similarity=-0.018  Sum_probs=233.6

Q ss_pred             cchhhhhhhHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009850           27 GVSRTRSDSFHAIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSL  106 (524)
Q Consensus        27 ~~l~~~~~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~a  106 (524)
                      +....+...+..+...+.....|+.+|..+...|++++|+..|++++..+|++..++..++.++...|++++|+..++++
T Consensus       286 g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  365 (597)
T 2xpi_A          286 DELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDL  365 (597)
T ss_dssp             HHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            44555566665554556788899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHh--------h-hcccHHHHHHHhHHHHHhcCCCcHH
Q 009850          107 RSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLA--------F-NGKRTKTARSQGKKFQVSVEQEATR  177 (524)
Q Consensus       107 l~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~--------~-~~~~~~~a~~~~~~~~~~~~p~~~~  177 (524)
                      +...|++.  ..+..+|.+|...|++++|+.+|++++++.+....        + ..+..+.+....+.. ....|++..
T Consensus       366 ~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~  442 (597)
T 2xpi_A          366 VDRHPEKA--VTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTA-ARLFQGTHL  442 (597)
T ss_dssp             HHHCTTSH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH-HHTTTTCSH
T ss_pred             HhhCcccH--HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCccchH
Confidence            99999887  67788999999999999999999999987644332        1 113444444333322 345788999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhccc------ccCCC-------
Q 009850          178 LLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPA------VADGP-------  243 (524)
Q Consensus       178 a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~------~~~~~-------  243 (524)
                      +++.+|.+|...|++++|+.+|+++++..|+++. |..+|.++.+.|++++|+..|+++...      .+...       
T Consensus       443 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l  522 (597)
T 2xpi_A          443 PYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANL  522 (597)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHH
Confidence            9999999999999999999999999999999998 999999999999999999999998655      33321       


Q ss_pred             -------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCcc
Q 009850          244 -------RGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL  301 (524)
Q Consensus       244 -------~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~l  301 (524)
                             +++++|+..|+++++..|++..++..+|.+|...|++++|+..|+++++.+|.+....
T Consensus       523 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~  587 (597)
T 2xpi_A          523 GHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMAS  587 (597)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHH
Confidence                   7889999999999999999999999999999999999999999999999999987644

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.90  E-value=1.3e-22  Score=192.05  Aligned_cols=175  Identities=11%  Similarity=0.041  Sum_probs=166.8

Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhccc
Q 009850           77 DRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKR  156 (524)
Q Consensus        77 p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~  156 (524)
                      |.++.+++.+|.++...|++++|+..|+++++.+|+++  .++..+|.++...|++++|+..|++++++           
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~a~~~lg~~~~~~g~~~~A~~~~~~al~~-----------   68 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDP--EALYWLARTQLKLGLVNPALENGKTLVAR-----------   68 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----------
Confidence            67788999999999999999999999999999999998  78899999999999999999999999999           


Q ss_pred             HHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCC
Q 009850          157 TKTARSQGKKFQVSVEQEATRLLGNLGWALMQQ-----------NNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGR  224 (524)
Q Consensus       157 ~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~-----------g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~  224 (524)
                                     +|+++.+++++|.++...           |++++|+..|+++++++|++.. |+++|.++..+|+
T Consensus        69 ---------------~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~  133 (217)
T 2pl2_A           69 ---------------TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGE  133 (217)
T ss_dssp             ---------------CTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             ---------------CCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC
Confidence                           999999999999999999           9999999999999999999999 9999999999999


Q ss_pred             HHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCcc
Q 009850          225 IGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL  301 (524)
Q Consensus       225 ~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~l  301 (524)
                      +++|+..|+                     +++++. +++.+++++|.++..+|++++|+..|+++++.+|.+....
T Consensus       134 ~~~A~~~~~---------------------~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~  188 (217)
T 2pl2_A          134 RDKAEASLK---------------------QALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLR  188 (217)
T ss_dssp             HHHHHHHHH---------------------HHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred             hHHHHHHHH---------------------HHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Confidence            999999999                     778888 8999999999999999999999999999999999988765

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.90  E-value=1.1e-21  Score=188.09  Aligned_cols=206  Identities=15%  Similarity=0.057  Sum_probs=195.0

Q ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 009850           46 DTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDL  125 (524)
Q Consensus        46 ~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~  125 (524)
                      ...|+.+|.++...|++++|+.+|++++..+|++..++..+|.++...|++++|+..|++++..+|.+.  .++..+|.+
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~la~~  114 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNA--RVLNNYGGF  114 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcH--HHHHHHHHH
Confidence            567999999999999999999999999999999999999999999999999999999999999999887  678899999


Q ss_pred             HHHcCChHHHHHHHHHHHH--HhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009850          126 YKRCGRLDDQIALLKHKLY--LIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRAL  203 (524)
Q Consensus       126 ~~~~g~~~eA~~~~~~al~--l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al  203 (524)
                      |...|++++|+.+|++++.  .                          .|.+..++..+|.++...|++++|+.+|++++
T Consensus       115 ~~~~g~~~~A~~~~~~~~~~~~--------------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  168 (252)
T 2ho1_A          115 LYEQKRYEEAYQRLLEASQDTL--------------------------YPERSRVFENLGLVSLQMKKPAQAKEYFEKSL  168 (252)
T ss_dssp             HHHTTCHHHHHHHHHHHTTCTT--------------------------CTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHhCcc--------------------------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            9999999999999999987  4                          78889999999999999999999999999999


Q ss_pred             hhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 009850          204 SIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFD  282 (524)
Q Consensus       204 ~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~e  282 (524)
                      ...|.+.. +..+|.++...|++++|+..|+                     +++...|....++..++.++...|++++
T Consensus       169 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~g~~~~  227 (252)
T 2ho1_A          169 RLNRNQPSVALEMADLLYKEREYVPARQYYD---------------------LFAQGGGQNARSLLLGIRLAKVFEDRDT  227 (252)
T ss_dssp             HHCSCCHHHHHHHHHHHHHTTCHHHHHHHHH---------------------HHHTTSCCCHHHHHHHHHHHHHTTCHHH
T ss_pred             hcCcccHHHHHHHHHHHHHcCCHHHHHHHHH---------------------HHHHhCcCcHHHHHHHHHHHHHccCHHH
Confidence            99999988 9999999999999999999999                     6777888999999999999999999999


Q ss_pred             HHHHHhhcccCCCCCCCc
Q 009850          283 AFLGSSSIWQPQPCKDHI  300 (524)
Q Consensus       283 Ai~~~~~al~~~P~~~~~  300 (524)
                      |+..++++++..|.+...
T Consensus       228 A~~~~~~~~~~~p~~~~~  245 (252)
T 2ho1_A          228 AASYGLQLKRLYPGSLEY  245 (252)
T ss_dssp             HHHHHHHHHHHCTTSHHH
T ss_pred             HHHHHHHHHHHCCCCHHH
Confidence            999999999999987653

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.90  E-value=6e-22  Score=181.27  Aligned_cols=173  Identities=17%  Similarity=0.109  Sum_probs=165.4

Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccH
Q 009850           78 RVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRT  157 (524)
Q Consensus        78 ~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~  157 (524)
                      +++..|+.+|.+|..+|++++|+..|+++++++|+++  .++..+|.+|...|++++|+..+.+++..            
T Consensus         3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~~~~~~a~~~~~~~~~~------------   68 (184)
T 3vtx_A            3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNV--ETLLKLGKTYMDIGLPNDAIESLKKFVVL------------   68 (184)
T ss_dssp             -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHCCCHHHHHHHHHHHHhc------------
Confidence            5678999999999999999999999999999999997  78899999999999999999999999988            


Q ss_pred             HHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhc
Q 009850          158 KTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVK  236 (524)
Q Consensus       158 ~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~  236 (524)
                                    .|++..++..+|.++...++++.|+..+.+++.++|++.. +..+|.++..+|++++|+..|+   
T Consensus        69 --------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~---  131 (184)
T 3vtx_A           69 --------------DTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYE---  131 (184)
T ss_dssp             --------------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH---
T ss_pred             --------------CchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHH---
Confidence                          8999999999999999999999999999999999999999 9999999999999999999999   


Q ss_pred             ccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCC
Q 009850          237 PAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  299 (524)
Q Consensus       237 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~  299 (524)
                                        ++++..|+++.+++++|.+|..+|++++|+..|+++++.+|.+..
T Consensus       132 ------------------~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a~  176 (184)
T 3vtx_A          132 ------------------KTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAK  176 (184)
T ss_dssp             ------------------HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHHH
T ss_pred             ------------------HHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCHH
Confidence                              788999999999999999999999999999999999999997644

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.90  E-value=6.8e-22  Score=210.63  Aligned_cols=225  Identities=11%  Similarity=0.046  Sum_probs=209.4

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 009850           48 PYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYK  127 (524)
Q Consensus        48 ~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~  127 (524)
                      +++.+|.++...|++++|+..|++++..+|+ ..++..+|.++...|++++|+..|++++..+|+++  .++..+|.+|.
T Consensus       245 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~  321 (537)
T 3fp2_A          245 ALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYP--PTYYHRGQMYF  321 (537)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCH--HHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCH--HHHHHHHHHHH
Confidence            5888999999999999999999999999999 99999999999999999999999999999999987  67889999999


Q ss_pred             HcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 009850          128 RCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAP  207 (524)
Q Consensus       128 ~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P  207 (524)
                      ..|++++|+..|++++..                          +|++..++..+|.++...|++++|+..|+++++.+|
T Consensus       322 ~~~~~~~A~~~~~~a~~~--------------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~  375 (537)
T 3fp2_A          322 ILQDYKNAKEDFQKAQSL--------------------------NPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFP  375 (537)
T ss_dssp             HTTCHHHHHHHHHHHHHH--------------------------CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             hcCCHHHHHHHHHHHHHh--------------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            999999999999999998                          899999999999999999999999999999999999


Q ss_pred             CcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCC-----------------------------cCHHHHHHHHHHHH
Q 009850          208 DNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGP-----------------------------RGVDSHLKAYERAQ  257 (524)
Q Consensus       208 ~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~-----------------------------~~~~~A~~~~~~al  257 (524)
                      +++. +..+|.++...|++++|+..|+++....+...                             +++++|+..|++++
T Consensus       376 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~  455 (537)
T 3fp2_A          376 TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKAC  455 (537)
T ss_dssp             TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHH
Confidence            9998 99999999999999999999999855443321                             67788999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCcc
Q 009850          258 QMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL  301 (524)
Q Consensus       258 ~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~l  301 (524)
                      ...|++..++..+|.++...|++++|+..|+++++..|......
T Consensus       456 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  499 (537)
T 3fp2_A          456 ELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKL  499 (537)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHH
Confidence            99999999999999999999999999999999999999877644

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.90  E-value=4.2e-22  Score=215.54  Aligned_cols=249  Identities=11%  Similarity=0.046  Sum_probs=193.8

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Q 009850           49 YVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKR  128 (524)
Q Consensus        49 ~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~  128 (524)
                      |..++..+...|++++|+..|++++.. |.+..++..+|.+|...|++++|+..|++++..+|++.  .++..++.++..
T Consensus       275 ~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~  351 (597)
T 2xpi_A          275 YMLKLNKTSHEDELRRAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNL--DVYPLHLASLHE  351 (597)
T ss_dssp             HHTTSCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCC--TTHHHHHHHHHH
T ss_pred             HHHHHHHHcCcchHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccH--HHHHHHHHHHHH
Confidence            445577778899999999999999988 78899999999999999999999999999999999876  677888999999


Q ss_pred             cCChHHHHHHHHHHHHHhhccHh--------h-hcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 009850          129 CGRLDDQIALLKHKLYLIQQGLA--------F-NGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAY  199 (524)
Q Consensus       129 ~g~~~eA~~~~~~al~l~~~~~~--------~-~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~  199 (524)
                      .|++++|+..+++++...+....        + ..+..+.+....... ...+|.+..+|+.+|.+|...|++++|+..|
T Consensus       352 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  430 (597)
T 2xpi_A          352 SGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKS-STMDPQFGPAWIGFAHSFAIEGEHDQAISAY  430 (597)
T ss_dssp             HTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             hCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            99999999999999877533221        1 113333333332221 2346777888888888888888888888888


Q ss_pred             HHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCC-------------cCHHHHHHHHHHHHHh------
Q 009850          200 RRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGP-------------RGVDSHLKAYERAQQM------  259 (524)
Q Consensus       200 ~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~-------------~~~~~A~~~~~~al~~------  259 (524)
                      ++++...|++.. |..+|.+|...|++++|+..|+++....+...             +++++|++.|++++..      
T Consensus       431 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  510 (597)
T 2xpi_A          431 TTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQS  510 (597)
T ss_dssp             HHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcccc
Confidence            888888887766 77888888888888888888888766655543             6777888888888777      


Q ss_pred             CCCC-HHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCcc
Q 009850          260 LKDL-ESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL  301 (524)
Q Consensus       260 ~p~~-~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~l  301 (524)
                      .|+. ..++..+|.++...|++++|+..|+++++.+|.+....
T Consensus       511 ~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~  553 (597)
T 2xpi_A          511 NEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVH  553 (597)
T ss_dssp             CSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHH
T ss_pred             chhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHH
Confidence            5553 67788888888888888888888888888777766544

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.89  E-value=2.5e-21  Score=181.27  Aligned_cols=208  Identities=14%  Similarity=0.070  Sum_probs=195.0

Q ss_pred             CCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 009850           43 PVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNIL  122 (524)
Q Consensus        43 p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~l  122 (524)
                      |..+..|+.+|.++...|++++|+..|++++..+|++..++..+|.++...|++++|+.+|++++..+|.+.  .++..+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~l   82 (225)
T 2vq2_A            5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSA--EINNNY   82 (225)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHH
T ss_pred             cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh--HHHHHH
Confidence            445678999999999999999999999999999999999999999999999999999999999999999987  677889


Q ss_pred             HHHHHHc-CChHHHHHHHHHHHH--HhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 009850          123 LDLYKRC-GRLDDQIALLKHKLY--LIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAY  199 (524)
Q Consensus       123 g~~~~~~-g~~~eA~~~~~~al~--l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~  199 (524)
                      |.++... |++++|+..|++++.  .                          .|.+..++..+|.++...|++++|+.+|
T Consensus        83 ~~~~~~~~~~~~~A~~~~~~~~~~~~--------------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~  136 (225)
T 2vq2_A           83 GWFLCGRLNRPAESMAYFDKALADPT--------------------------YPTPYIANLNKGICSAKQGQFGLAEAYL  136 (225)
T ss_dssp             HHHHHTTTCCHHHHHHHHHHHHTSTT--------------------------CSCHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHcCcC--------------------------CcchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            9999999 999999999999987  3                          6788899999999999999999999999


Q ss_pred             HHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHc
Q 009850          200 RRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLK-DLESEMMNKGGDRVEQ  277 (524)
Q Consensus       200 ~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~  277 (524)
                      +++++..|++.. +..+|.++...|++++|+..++                     +++...| .....+..++.++...
T Consensus       137 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~  195 (225)
T 2vq2_A          137 KRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFK---------------------KYQSRVEVLQADDLLLGWKIAKAL  195 (225)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHH---------------------HHHHHHCSCCHHHHHHHHHHHHHT
T ss_pred             HHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHH---------------------HHHHhCCCCCHHHHHHHHHHHHhc
Confidence            999999999988 9999999999999999999999                     6777888 8899999999999999


Q ss_pred             CCHHHHHHHHhhcccCCCCCCC
Q 009850          278 SRLFDAFLGSSSIWQPQPCKDH  299 (524)
Q Consensus       278 g~~~eAi~~~~~al~~~P~~~~  299 (524)
                      |+.++|...++.+.+..|.+..
T Consensus       196 ~~~~~a~~~~~~~~~~~p~~~~  217 (225)
T 2vq2_A          196 GNAQAAYEYEAQLQANFPYSEE  217 (225)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHH
T ss_pred             CcHHHHHHHHHHHHHhCCCCHH
Confidence            9999999999999988888765

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.89  E-value=4.6e-22  Score=211.02  Aligned_cols=201  Identities=15%  Similarity=0.068  Sum_probs=191.4

Q ss_pred             hcCCCChHHHHHHHHHHHHcCCh-HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 009850           40 HKVPVGDTPYVRAKNVQLVDKDP-EKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESL  118 (524)
Q Consensus        40 ~~~p~~~~~~~~lg~~~~~~g~~-~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l  118 (524)
                      ...+.....|+.+|.++...|++ ++|+.+|+++++.+|++..+|+.+|.+|..+|++++|+.+|+++++++|+ .  .+
T Consensus        96 ~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~--~~  172 (474)
T 4abn_A           96 GSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-K--VS  172 (474)
T ss_dssp             TTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-H--HH
T ss_pred             ccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-H--HH
Confidence            34567888999999999999999 99999999999999999999999999999999999999999999999999 3  78


Q ss_pred             HHHHHHHHHHc---------CChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHc
Q 009850          119 DNILLDLYKRC---------GRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQ  189 (524)
Q Consensus       119 ~~~lg~~~~~~---------g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~  189 (524)
                      +..+|.+|...         |++++|+..|++++++                          +|+++.+|+++|.+|...
T Consensus       173 ~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------------------------~p~~~~~~~~lg~~~~~~  226 (474)
T 4abn_A          173 LQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--------------------------DVLDGRSWYILGNAYLSL  226 (474)
T ss_dssp             HHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--------------------------CTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--------------------------CCCCHHHHHHHHHHHHHH
Confidence            89999999999         9999999999999999                          999999999999999999


Q ss_pred             --------CCHHHHHHHHHHHHhhCC---CcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHH
Q 009850          190 --------NNYIEAEDAYRRALSIAP---DNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQ  257 (524)
Q Consensus       190 --------g~~~eAi~~~~~Al~l~P---~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al  257 (524)
                              |++++|+.+|+++++++|   +++. |+++|.+|..+|++++|+..|+                     +++
T Consensus       227 ~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~---------------------~al  285 (474)
T 4abn_A          227 YFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFS---------------------QAA  285 (474)
T ss_dssp             HHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHH---------------------HHH
T ss_pred             HHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHH---------------------HHH
Confidence                    999999999999999999   8888 9999999999999999999999                     888


Q ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhc
Q 009850          258 QMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSI  290 (524)
Q Consensus       258 ~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~a  290 (524)
                      +..|++..++.+++.++..+|++++|+..+.+.
T Consensus       286 ~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~  318 (474)
T 4abn_A          286 ALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT  318 (474)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            999999999999999999999999999987655

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.88  E-value=7.4e-22  Score=208.75  Aligned_cols=230  Identities=13%  Similarity=0.019  Sum_probs=214.7

Q ss_pred             CCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 009850           43 PVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNIL  122 (524)
Q Consensus        43 p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~l  122 (524)
                      |....+++.+|.++...|++++|+..|++++..+|+ ..++..+|.++...|++++|+..|++++..+|.+.  .++..+
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l  310 (514)
T 2gw1_A          234 EKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNS--SVYYHR  310 (514)
T ss_dssp             HHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCT--HHHHHH
T ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCH--HHHHHH
Confidence            455678999999999999999999999999999999 99999999999999999999999999999999887  678899


Q ss_pred             HHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009850          123 LDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRA  202 (524)
Q Consensus       123 g~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~A  202 (524)
                      |.+|...|++++|+..|++++..                          +|.+..++..+|.++...|++++|+..|+++
T Consensus       311 ~~~~~~~~~~~~A~~~~~~~~~~--------------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  364 (514)
T 2gw1_A          311 GQMNFILQNYDQAGKDFDKAKEL--------------------------DPENIFPYIQLACLAYRENKFDDCETLFSEA  364 (514)
T ss_dssp             HHHHHHTTCTTHHHHHHHHHHHT--------------------------CSSCSHHHHHHHHHTTTTTCHHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHh--------------------------ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            99999999999999999999988                          8889999999999999999999999999999


Q ss_pred             HhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCC----------------------CcCHHHHHHHHHHHHHh
Q 009850          203 LSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADG----------------------PRGVDSHLKAYERAQQM  259 (524)
Q Consensus       203 l~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~----------------------~~~~~~A~~~~~~al~~  259 (524)
                      +...|+++. ++++|.++...|++++|+..|+++....+..                      .+++++|+..|++++..
T Consensus       365 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~  444 (514)
T 2gw1_A          365 KRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL  444 (514)
T ss_dssp             HHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH
T ss_pred             HHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh
Confidence            999999988 9999999999999999999999986555443                      56788999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCcc
Q 009850          260 LKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL  301 (524)
Q Consensus       260 ~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~l  301 (524)
                      .|+...++..+|.++...|++++|+..|+++++.+|.+....
T Consensus       445 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  486 (514)
T 2gw1_A          445 DPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKL  486 (514)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHH
T ss_pred             CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHH
Confidence            999999999999999999999999999999999999877654

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.88  E-value=4.6e-21  Score=181.77  Aligned_cols=200  Identities=13%  Similarity=0.115  Sum_probs=175.0

Q ss_pred             CCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 009850           43 PVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGD-RVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNI  121 (524)
Q Consensus        43 p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p-~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~  121 (524)
                      +.++..++.+|.+++..|++++|+..|++++..+| .+..+++.+|.++..+|++++|+.+|++++..+|++.  .++..
T Consensus         4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~   81 (228)
T 4i17_A            4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLA--NAYIG   81 (228)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHH--HHHHH
T ss_pred             ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchH--HHHHH
Confidence            34568899999999999999999999999999998 8899999999999999999999999999999999987  78899


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcH-------HHHHHHHHHHHHcCCHHH
Q 009850          122 LLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEAT-------RLLGNLGWALMQQNNYIE  194 (524)
Q Consensus       122 lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~-------~a~~~Lg~~~~~~g~~~e  194 (524)
                      +|.+|...|++++|+..|++++++                          +|+++       .++.++|.++...|++++
T Consensus        82 l~~~~~~~~~~~~A~~~~~~al~~--------------------------~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~  135 (228)
T 4i17_A           82 KSAAYRDMKNNQEYIATLTEGIKA--------------------------VPGNATIEKLYAIYYLKEGQKFQQAGNIEK  135 (228)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH--------------------------STTCHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHH--------------------------CCCcHHHHHHHHHHHHHHhHHHHHhccHHH
Confidence            999999999999999999999999                          78887       679999999999999999


Q ss_pred             HHHHHHHHHhhCCC--cHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCC-----------CcCHHHHHHHHHHHHHhC
Q 009850          195 AEDAYRRALSIAPD--NNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADG-----------PRGVDSHLKAYERAQQML  260 (524)
Q Consensus       195 Ai~~~~~Al~l~P~--~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~-----------~~~~~~A~~~~~~al~~~  260 (524)
                      |+..|+++++++|+  +.. |+++|.++..+|+.     .++++.......           .+.+++|+..|++++++.
T Consensus       136 A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~  210 (228)
T 4i17_A          136 AEENYKHATDVTSKKWKTDALYSLGVLFYNNGAD-----VLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLS  210 (228)
T ss_dssp             HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHH-----HHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            99999999999999  888 99999999888765     122221111111           134567888999999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 009850          261 KDLESEMMNKGGDRV  275 (524)
Q Consensus       261 p~~~~a~~~lg~~~~  275 (524)
                      |++..+...++.+..
T Consensus       211 p~~~~~~~~l~~i~~  225 (228)
T 4i17_A          211 PNRTEIKQMQDQVKA  225 (228)
T ss_dssp             TTCHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHH
Confidence            999999888887654

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.88  E-value=5.5e-21  Score=203.62  Aligned_cols=130  Identities=10%  Similarity=0.064  Sum_probs=120.6

Q ss_pred             cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCC------
Q 009850          171 VEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGP------  243 (524)
Q Consensus       171 ~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~------  243 (524)
                      .+|+ ..++..+|.++...|++++|+.+|++++..+|+++. +..+|.++...|++++|+..|+++....+...      
T Consensus       272 ~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l  350 (537)
T 3fp2_A          272 LHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQL  350 (537)
T ss_dssp             HCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHH
T ss_pred             cCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            4788 899999999999999999999999999999999998 99999999999999999999999988777764      


Q ss_pred             -------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCcc
Q 009850          244 -------RGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL  301 (524)
Q Consensus       244 -------~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~l  301 (524)
                             +++++|+..|++++...|+...++..+|.++...|++++|+..|+++++..|.+....
T Consensus       351 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  415 (537)
T 3fp2_A          351 ACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIH  415 (537)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCS
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhH
Confidence                   7889999999999999999999999999999999999999999999999988877644

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.88  E-value=2.1e-21  Score=199.91  Aligned_cols=212  Identities=9%  Similarity=0.025  Sum_probs=193.6

Q ss_pred             HHHhcCCCChHHHHHHHHHHHHcCC-hHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q 009850           37 HAIHKVPVGDTPYVRAKNVQLVDKD-PEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQ  115 (524)
Q Consensus        37 ~~~~~~p~~~~~~~~lg~~~~~~g~-~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~  115 (524)
                      +++...|....+|+.+|.++...|+ +++|+.+|++++.++|++..+|+.+|.++..+|++++|+..|++++.++|++. 
T Consensus       122 ~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~-  200 (382)
T 2h6f_A          122 DAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNY-  200 (382)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCH-
T ss_pred             HHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCH-
Confidence            4567789999999999999999997 99999999999999999999999999999999999999999999999999997 


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHH-cCCHHH
Q 009850          116 ESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQ-QNNYIE  194 (524)
Q Consensus       116 ~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~-~g~~~e  194 (524)
                       .+++.+|.++...|++++|+.+|++++++                          +|++..+|+++|.++.. .|.+++
T Consensus       201 -~a~~~lg~~~~~~g~~~eAl~~~~~al~l--------------------------~P~~~~a~~~lg~~l~~l~~~~~e  253 (382)
T 2h6f_A          201 -HAWQHRQWVIQEFKLWDNELQYVDQLLKE--------------------------DVRNNSVWNQRYFVISNTTGYNDR  253 (382)
T ss_dssp             -HHHHHHHHHHHHHTCCTTHHHHHHHHHHH--------------------------CTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred             -HHHHHHHHHHHHcCChHHHHHHHHHHHHh--------------------------CCCCHHHHHHHHHHHHHhcCcchH
Confidence             78899999999999999999999999999                          99999999999999999 565588


Q ss_pred             H-----HHHHHHHHhhCCCcHH-HHHHHHHHHHcC--CHHHHHHHHHHhcccccCCC-------------c---------
Q 009850          195 A-----EDAYRRALSIAPDNNK-MCNLGICLMKQG--RIGEAKETLRRVKPAVADGP-------------R---------  244 (524)
Q Consensus       195 A-----i~~~~~Al~l~P~~~~-~~~Lg~~~~~~G--~~~eA~~~~~~a~~~~~~~~-------------~---------  244 (524)
                      |     +.+|++++.++|++.. |+++|.++...|  ++++|+..++++ ...++..             +         
T Consensus       254 A~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~  332 (382)
T 2h6f_A          254 AVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKED  332 (382)
T ss_dssp             HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHH
Confidence            8     5999999999999999 999999999988  699999999987 5555543             1         


Q ss_pred             CHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHc
Q 009850          245 GVDSHLKAYERA-QQMLKDLESEMMNKGGDRVEQ  277 (524)
Q Consensus       245 ~~~~A~~~~~~a-l~~~p~~~~a~~~lg~~~~~~  277 (524)
                      ..++|++.|+++ ++++|.....|..++..+..+
T Consensus       333 ~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~  366 (382)
T 2h6f_A          333 ILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK  366 (382)
T ss_dssp             HHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence            147899999999 999999999999999877654

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.88  E-value=4.1e-21  Score=203.04  Aligned_cols=252  Identities=10%  Similarity=0.045  Sum_probs=189.6

Q ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 009850           46 DTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDL  125 (524)
Q Consensus        46 ~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~  125 (524)
                      .+.|+.+|..++..|++++|+..|++++..+| ++.++..+|.++...|++++|+..|+++++.+|++.  .++..+|.+
T Consensus         6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~l~~~   82 (514)
T 2gw1_A            6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYS--KVLLRRASA   82 (514)
T ss_dssp             HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCH--HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHH--HHHHHHHHH
Confidence            45788999999999999999999999999998 588999999999999999999999999999999987  678889999


Q ss_pred             HHHcCChHHHHHHHHHHHHHhhccHh------------------------------------------------------
Q 009850          126 YKRCGRLDDQIALLKHKLYLIQQGLA------------------------------------------------------  151 (524)
Q Consensus       126 ~~~~g~~~eA~~~~~~al~l~~~~~~------------------------------------------------------  151 (524)
                      |...|++++|+..|++++...+....                                                      
T Consensus        83 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (514)
T 2gw1_A           83 NEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT  162 (514)
T ss_dssp             HHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred             HHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence            99999999999999998876531110                                                      


Q ss_pred             ----------------------------------hh---cccHHHHHHH-hHHHH-----HhcC-------CCcHHHHHH
Q 009850          152 ----------------------------------FN---GKRTKTARSQ-GKKFQ-----VSVE-------QEATRLLGN  181 (524)
Q Consensus       152 ----------------------------------~~---~~~~~~a~~~-~~~~~-----~~~~-------p~~~~a~~~  181 (524)
                                                        +.   .+..+.+... .+...     ...+       |.++.+++.
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (514)
T 2gw1_A          163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH  242 (514)
T ss_dssp             HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence                                              00   1122222222 22221     1112       444667777


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCC-------------cCHH
Q 009850          182 LGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGP-------------RGVD  247 (524)
Q Consensus       182 Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~-------------~~~~  247 (524)
                      +|.++...|++++|+..|++++..+|+ .. +..+|.++...|++++|+..|+++....+...             ++++
T Consensus       243 ~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  321 (514)
T 2gw1_A          243 TGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYD  321 (514)
T ss_dssp             HHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHH
Confidence            777787888888888888888877777 55 77777777777887777777777766655543             5666


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCcc
Q 009850          248 SHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL  301 (524)
Q Consensus       248 ~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~l  301 (524)
                      .|+..|++++...|....++..+|.++...|++++|+..|+++++..|.+....
T Consensus       322 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  375 (514)
T 2gw1_A          322 QAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVP  375 (514)
T ss_dssp             HHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHH
T ss_pred             HHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHH
Confidence            777777777777777777777777777777777777777777777777666544

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.88  E-value=1.1e-21  Score=217.35  Aligned_cols=160  Identities=19%  Similarity=0.239  Sum_probs=149.0

Q ss_pred             cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhc
Q 009850           75 AGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNG  154 (524)
Q Consensus        75 ~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~  154 (524)
                      ..|++++++++||.+|..+|++++|+.+|+++++++|++.  .+++.+|.+|..+|++++|+..|++++++         
T Consensus         4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~--~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---------   72 (723)
T 4gyw_A            4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFA--AAHSNLASVLQQQGKLQEALMHYKEAIRI---------   72 (723)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------
T ss_pred             CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------
Confidence            4689999999999999999999999999999999999997  78899999999999999999999999999         


Q ss_pred             ccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHH
Q 009850          155 KRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLR  233 (524)
Q Consensus       155 ~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~  233 (524)
                                       +|+++.+|+++|.+|..+|++++|+.+|+++++++|++.. |+++|.+|..+|++++|+..|+
T Consensus        73 -----------------~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~  135 (723)
T 4gyw_A           73 -----------------SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYR  135 (723)
T ss_dssp             -----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             -----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence                             9999999999999999999999999999999999999999 9999999999999999999999


Q ss_pred             HhcccccCCC-------------cCHHHHHHHHHHHHHhCCC
Q 009850          234 RVKPAVADGP-------------RGVDSHLKAYERAQQMLKD  262 (524)
Q Consensus       234 ~a~~~~~~~~-------------~~~~~A~~~~~~al~~~p~  262 (524)
                      +++...|+..             +++++|.+.+++++++.|+
T Consensus       136 ~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~  177 (723)
T 4gyw_A          136 TALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVAD  177 (723)
T ss_dssp             HHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChh
Confidence            9988888765             6667788888888887654

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.87  E-value=8.8e-21  Score=183.68  Aligned_cols=227  Identities=11%  Similarity=-0.120  Sum_probs=169.2

Q ss_pred             cchhhhhhhHHHHhcC-----CCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 009850           27 GVSRTRSDSFHAIHKV-----PVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIE  101 (524)
Q Consensus        27 ~~l~~~~~~~~~~~~~-----p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~  101 (524)
                      +....+...+..+...     |....+|+.+|.++...|++++|+.+|++++..+|++..++..+|.++...|++++|+.
T Consensus        19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~   98 (275)
T 1xnf_A           19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYE   98 (275)
T ss_dssp             HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHH
Confidence            4555555555544433     33456777888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHH
Q 009850          102 AIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGN  181 (524)
Q Consensus       102 ~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~  181 (524)
                      +|++++..+|.+.  .++..+|.+|...|++++|+..|++++++                          +|++......
T Consensus        99 ~~~~al~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~a~~~--------------------------~~~~~~~~~~  150 (275)
T 1xnf_A           99 AFDSVLELDPTYN--YAHLNRGIALYYGGRDKLAQDDLLAFYQD--------------------------DPNDPFRSLW  150 (275)
T ss_dssp             HHHHHHHHCTTCT--HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------------CTTCHHHHHH
T ss_pred             HHHHHHhcCcccc--HHHHHHHHHHHHhccHHHHHHHHHHHHHh--------------------------CCCChHHHHH
Confidence            8888888888775  56677788888888888888888888777                          6777655555


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCC
Q 009850          182 LGWALMQQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLK  261 (524)
Q Consensus       182 Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p  261 (524)
                      ++.+ ...|++++|+..|++++...|.+.....++.++...++.++|+..++++....+                 ...|
T Consensus       151 ~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-----------------~~~~  212 (275)
T 1xnf_A          151 LYLA-EQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNT-----------------SLAE  212 (275)
T ss_dssp             HHHH-HHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHH-----------------HHHH
T ss_pred             HHHH-HHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccc-----------------cccc
Confidence            5544 556888888888888888777765544567777777777777777776543221                 1222


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCC
Q 009850          262 DLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  299 (524)
Q Consensus       262 ~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~  299 (524)
                      ....+++.+|.++...|++++|+..|++++..+|.+..
T Consensus       213 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  250 (275)
T 1xnf_A          213 HLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV  250 (275)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred             cccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence            34678999999999999999999999999999987654

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.87  E-value=2.9e-21  Score=195.54  Aligned_cols=234  Identities=12%  Similarity=-0.004  Sum_probs=197.5

Q ss_pred             HHHHcCChHHHHH-HHHHHHHcCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHc
Q 009850           55 VQLVDKDPEKAIP-LFWAAINAGDRVD----SALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRC  129 (524)
Q Consensus        55 ~~~~~g~~~~Ai~-~~~~al~~~p~~~----~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~  129 (524)
                      ++...|++++|+. .|.+++...|+++    ..++.+|.++...|++++|+..|+++++.+|++.  .++..+|.+|...
T Consensus        34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~l~~~~~~~  111 (368)
T 1fch_A           34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHM--EAWQYLGTTQAEN  111 (368)
T ss_dssp             ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCH--HHHHHHHHHHHHT
T ss_pred             hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHC
Confidence            5566799999999 9999999988764    5689999999999999999999999999999987  7788999999999


Q ss_pred             CChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 009850          130 GRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDN  209 (524)
Q Consensus       130 g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~  209 (524)
                      |++++|+..|++++++                          +|+++.++..+|.++...|++++|+..|++++.+.|++
T Consensus       112 g~~~~A~~~~~~al~~--------------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  165 (368)
T 1fch_A          112 EQELLAISALRRCLEL--------------------------KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAY  165 (368)
T ss_dssp             TCHHHHHHHHHHHHHH--------------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTT
T ss_pred             cCHHHHHHHHHHHHhc--------------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Confidence            9999999999999998                          89999999999999999999999999999999999998


Q ss_pred             HH-HH----------------HHHHHHHHcCCHHHHHHHHHHhcccccC--CC-------------cCHHHHHHHHHHHH
Q 009850          210 NK-MC----------------NLGICLMKQGRIGEAKETLRRVKPAVAD--GP-------------RGVDSHLKAYERAQ  257 (524)
Q Consensus       210 ~~-~~----------------~Lg~~~~~~G~~~eA~~~~~~a~~~~~~--~~-------------~~~~~A~~~~~~al  257 (524)
                      .. +.                .++.++ ..|++++|+..|+++....|.  ..             +++++|+..|++++
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  244 (368)
T 1fch_A          166 AHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAAL  244 (368)
T ss_dssp             GGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            77 32                577777 999999999999999888777  32             78899999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCcccccccccccccccccccc
Q 009850          258 QMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTTNAIKTRDDFADENID  319 (524)
Q Consensus       258 ~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~l~~~~l~~~~q~lgd~~~~  319 (524)
                      ...|+.+.++.++|.++...|++++|+..|++++..+|.+......  +..+....|+....
T Consensus       245 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--l~~~~~~~g~~~~A  304 (368)
T 1fch_A          245 SVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYN--LGISCINLGAHREA  304 (368)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH--HHHHHHHHTCHHHH
T ss_pred             HhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH--HHHHHHHCCCHHHH
Confidence            9999999999999999999999999999999999999988776544  33333444554443

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.85  E-value=1.7e-20  Score=197.09  Aligned_cols=269  Identities=13%  Similarity=0.011  Sum_probs=199.1

Q ss_pred             hhhhhhHH-HHhcCCCChHHHHHHHHHHH---HcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc----CCHHHHHH
Q 009850           30 RTRSDSFH-AIHKVPVGDTPYVRAKNVQL---VDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQ----NRAEEAIE  101 (524)
Q Consensus        30 ~~~~~~~~-~~~~~p~~~~~~~~lg~~~~---~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~----g~~~eAi~  101 (524)
                      ..+...|. ++...|..++++..+|.+++   ..+++++|+..|+++++++|++..++..+|..+...    |++++|+.
T Consensus       155 ~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~  234 (472)
T 4g1t_A          155 ERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEK  234 (472)
T ss_dssp             HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence            34555554 66778999999999988754   569999999999999999999999999998777654    67889999


Q ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhccc-------------------------
Q 009850          102 AIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKR-------------------------  156 (524)
Q Consensus       102 ~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~-------------------------  156 (524)
                      ++++++..+|+..  .++..+|.+|...|++++|+..|+++++..+.........                         
T Consensus       235 ~~~~al~~~~~~~--~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~  312 (472)
T 4g1t_A          235 LVEEALEKAPGVT--DVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKL  312 (472)
T ss_dssp             HHHHHHHHCSSCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHH
T ss_pred             HHHHHHHhCccHH--HHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            9999999999997  6778999999999999999999999999875443221100                         


Q ss_pred             ---HHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH----HHHHHHH-HHHcCCHHHH
Q 009850          157 ---TKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK----MCNLGIC-LMKQGRIGEA  228 (524)
Q Consensus       157 ---~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~----~~~Lg~~-~~~~G~~~eA  228 (524)
                         .+.+..... .....+|.+..++..+|.++...|++++|+.+|+++++++|++..    ++++|.+ +...|++++|
T Consensus       313 ~~~~~~A~~~~~-~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A  391 (472)
T 4g1t_A          313 LELIGHAVAHLK-KADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKA  391 (472)
T ss_dssp             HHHHHHHHHHHH-HHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHH
T ss_pred             HhhHHHHHHHHH-HHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHH
Confidence               011111111 113458999999999999999999999999999999999988754    5566654 4578999999


Q ss_pred             HHHHHHhcccccCCC---cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCcc
Q 009850          229 KETLRRVKPAVADGP---RGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL  301 (524)
Q Consensus       229 ~~~~~~a~~~~~~~~---~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~l  301 (524)
                      +..|++++...+...   .....+.+.+++++..+|+++.++.++|.+|..+|++++|+.+|+++++..|.++...
T Consensus       392 i~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~  467 (472)
T 4g1t_A          392 IHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSAS  467 (472)
T ss_dssp             HHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC--------------------
T ss_pred             HHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHh
Confidence            999999988777764   3345566778899999999999999999999999999999999999999998877643

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.85  E-value=1.6e-19  Score=171.46  Aligned_cols=202  Identities=15%  Similarity=0.145  Sum_probs=179.1

Q ss_pred             chhhhhhhHH-HHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009850           28 VSRTRSDSFH-AIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSL  106 (524)
Q Consensus        28 ~l~~~~~~~~-~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~a  106 (524)
                      ....+...+. ++...|.....++.+|.++...|++++|+..|++++..+|++..++..+|.++...|++++|+..++++
T Consensus        38 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~  117 (243)
T 2q7f_A           38 DYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKA  117 (243)
T ss_dssp             ----CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            3444444444 445568889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHH
Q 009850          107 RSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWAL  186 (524)
Q Consensus       107 l~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~  186 (524)
                      ++..|.+.  .++..+|.++...|++++|+..|++++..                          .|++..++..+|.++
T Consensus       118 ~~~~~~~~--~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------------------------~~~~~~~~~~l~~~~  169 (243)
T 2q7f_A          118 LRAGMENG--DLFYMLGTVLVKLEQPKLALPYLQRAVEL--------------------------NENDTEARFQFGMCL  169 (243)
T ss_dssp             HHHTCCSH--HHHHHHHHHHHHTSCHHHHHHHHHHHHHH--------------------------CTTCHHHHHHHHHHH
T ss_pred             HHhCCCCH--HHHHHHHHHHHHhccHHHHHHHHHHHHHh--------------------------CCccHHHHHHHHHHH
Confidence            99999887  67888999999999999999999999998                          899999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHH
Q 009850          187 MQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLES  265 (524)
Q Consensus       187 ~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~  265 (524)
                      ...|++++|+..|++++...|++.. +..+|.++..+|++++|+.+|+                     +++...|++..
T Consensus       170 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~---------------------~~~~~~p~~~~  228 (243)
T 2q7f_A          170 ANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLD---------------------KAIDIQPDHML  228 (243)
T ss_dssp             HHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHH---------------------HHHHHCTTCHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHH---------------------HHHccCcchHH
Confidence            9999999999999999999999998 9999999999999999999999                     78888899998


Q ss_pred             HHHHHHHHHHHcC
Q 009850          266 EMMNKGGDRVEQS  278 (524)
Q Consensus       266 a~~~lg~~~~~~g  278 (524)
                      ++..++.+....+
T Consensus       229 ~~~~~~~l~~~~~  241 (243)
T 2q7f_A          229 ALHAKKLLGHHHH  241 (243)
T ss_dssp             HHHHHTC------
T ss_pred             HHHHHHHHHhhcc
Confidence            8888876655443

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.85  E-value=1.4e-19  Score=190.02  Aligned_cols=251  Identities=12%  Similarity=0.050  Sum_probs=204.1

Q ss_pred             ChHHHHHHHHHHHHcCChHHHHHHHHHHHHc---------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----
Q 009850           45 GDTPYVRAKNVQLVDKDPEKAIPLFWAAINA---------GDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCS----  111 (524)
Q Consensus        45 ~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~---------~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p----  111 (524)
                      ....|..+|.++..+|++++|+.+|++++++         +|....+|.++|.+|..+|++++|+.+|++++.+.+    
T Consensus        50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~  129 (472)
T 4g1t_A           50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS  129 (472)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence            4567889999999999999999999999986         677888999999999999999999999999998744    


Q ss_pred             ----CcHHHHHHHHHHHHHHHc--CChHHHHHHHHHHHHHhhccHhhhcccH-------------HHHHHHhHHHHHhcC
Q 009850          112 ----DQAQESLDNILLDLYKRC--GRLDDQIALLKHKLYLIQQGLAFNGKRT-------------KTARSQGKKFQVSVE  172 (524)
Q Consensus       112 ----~~~~~~l~~~lg~~~~~~--g~~~eA~~~~~~al~l~~~~~~~~~~~~-------------~~a~~~~~~~~~~~~  172 (524)
                          ..+  .++..+|..+...  +++++|+.+|++++++.+..........             ++...+.+  .+.++
T Consensus       130 ~~~~~~~--~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~--al~l~  205 (472)
T 4g1t_A          130 PYRIESP--ELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQ--AIRLN  205 (472)
T ss_dssp             SSCCCCH--HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHH--HHHHC
T ss_pred             ccchhhH--HHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHH--HhhcC
Confidence                223  5556666666554  5799999999999999865443221111             11111212  24558


Q ss_pred             CCcHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCC----
Q 009850          173 QEATRLLGNLGWALMQQ----NNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGP----  243 (524)
Q Consensus       173 p~~~~a~~~Lg~~~~~~----g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~----  243 (524)
                      |+++.++.++|..+...    |++++|+.+|++++..+|++.. +.++|.+|...|++++|+..|++++...|...    
T Consensus       206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  285 (472)
T 4g1t_A          206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHC  285 (472)
T ss_dssp             SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred             CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHH
Confidence            99999999998776654    6788999999999999999999 99999999999999999999999988877753    


Q ss_pred             ----------------------------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCC
Q 009850          244 ----------------------------RGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQP  295 (524)
Q Consensus       244 ----------------------------~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P  295 (524)
                                                  ...+.|+..|++++...|....++..+|.++...|++++|+..|++++..+|
T Consensus       286 ~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~  365 (472)
T 4g1t_A          286 QIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKEL  365 (472)
T ss_dssp             HHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCC
Confidence                                        1235678899999999999999999999999999999999999999999887


Q ss_pred             CCCC
Q 009850          296 CKDH  299 (524)
Q Consensus       296 ~~~~  299 (524)
                      .+..
T Consensus       366 ~~~~  369 (472)
T 4g1t_A          366 TPVA  369 (472)
T ss_dssp             CHHH
T ss_pred             CChH
Confidence            6544

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.85  E-value=3.7e-19  Score=173.35  Aligned_cols=219  Identities=12%  Similarity=0.080  Sum_probs=184.7

Q ss_pred             CCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHH
Q 009850           43 PVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQ----QNRAEEAIEAIKSLRSRCSDQAQESL  118 (524)
Q Consensus        43 p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~----~g~~~eAi~~~~~al~~~p~~~~~~l  118 (524)
                      |..+.+++.+|.++...|++++|+.+|+++++  |+++.+++.+|.++..    .|++++|+.+|+++++..  ++  ..
T Consensus         3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~--~a   76 (273)
T 1ouv_A            3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YS--NG   76 (273)
T ss_dssp             --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CH--HH
T ss_pred             CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CH--HH
Confidence            45677899999999999999999999999998  7888999999999999    999999999999999986  44  67


Q ss_pred             HHHHHHHHHH----cCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHH----cC
Q 009850          119 DNILLDLYKR----CGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQ----QN  190 (524)
Q Consensus       119 ~~~lg~~~~~----~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~----~g  190 (524)
                      ++.+|.+|..    .+++++|+.+|+++++.                            +++.+++++|.+|..    .+
T Consensus        77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----------------------------~~~~a~~~lg~~~~~~~~~~~  128 (273)
T 1ouv_A           77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDL----------------------------KYAEGCASLGGIYHDGKVVTR  128 (273)
T ss_dssp             HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------------------------TCHHHHHHHHHHHHHCSSSCC
T ss_pred             HHHHHHHHhCCCCcccCHHHHHHHHHHHHHc----------------------------CCccHHHHHHHHHHcCCCccc
Confidence            7889999999    99999999999999876                            467888999999998    89


Q ss_pred             CHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHH----cCCHHHHHHHHHHhcccccC---------------CCcCHHHHH
Q 009850          191 NYIEAEDAYRRALSIAPDNNK-MCNLGICLMK----QGRIGEAKETLRRVKPAVAD---------------GPRGVDSHL  250 (524)
Q Consensus       191 ~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~----~G~~~eA~~~~~~a~~~~~~---------------~~~~~~~A~  250 (524)
                      ++++|+.+|+++++.+  +.. ++++|.+|..    .+++++|+.+|+++......               ..++.++|+
T Consensus       129 ~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~  206 (273)
T 1ouv_A          129 DFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEAL  206 (273)
T ss_dssp             CHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHH
T ss_pred             CHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence            9999999999998876  445 8888999988    88999999999887443211               135677788


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHhhcccCCCCCCC
Q 009850          251 KAYERAQQMLKDLESEMMNKGGDRVE----QSRLFDAFLGSSSIWQPQPCKDH  299 (524)
Q Consensus       251 ~~~~~al~~~p~~~~a~~~lg~~~~~----~g~~~eAi~~~~~al~~~P~~~~  299 (524)
                      ..|+++++..+  ..+++++|.+|..    .+++++|+..|+++++..|.+..
T Consensus       207 ~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~  257 (273)
T 1ouv_A          207 ARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGAC  257 (273)
T ss_dssp             HHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHH
Confidence            88888888765  7788889999888    88899999999988888776544

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.85  E-value=1.2e-19  Score=189.01  Aligned_cols=198  Identities=16%  Similarity=0.141  Sum_probs=173.6

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcC
Q 009850           51 RAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCG  130 (524)
Q Consensus        51 ~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g  130 (524)
                      .+|.++...|++++|+..|++++...|.+..++..+|.+|...|++++|+..|++++..+|+++  .++..+|.+|...|
T Consensus       148 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g  225 (450)
T 2y4t_A          148 SQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNT--EAFYKISTLYYQLG  225 (450)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCH--HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcC
Confidence            4477799999999999999999999999999999999999999999999999999999999987  78889999999999


Q ss_pred             ChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHH------------HHHHHHcCCHHHHHHH
Q 009850          131 RLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNL------------GWALMQQNNYIEAEDA  198 (524)
Q Consensus       131 ~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~L------------g~~~~~~g~~~eAi~~  198 (524)
                      ++++|+..|++++.+                          +|++..++..+            |.++...|++++|+.+
T Consensus       226 ~~~~A~~~~~~~~~~--------------------------~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~  279 (450)
T 2y4t_A          226 DHELSLSEVRECLKL--------------------------DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSK  279 (450)
T ss_dssp             CHHHHHHHHHHHHHH--------------------------CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHh--------------------------CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            999999999999988                          66666666555            8888888888888888


Q ss_pred             HHHHHhhCCCcHH-----HHHHHHHHHHcCCHHHHHHHHHHhcccccCCC-------------cCHHHHHHHHHHHHHhC
Q 009850          199 YRRALSIAPDNNK-----MCNLGICLMKQGRIGEAKETLRRVKPAVADGP-------------RGVDSHLKAYERAQQML  260 (524)
Q Consensus       199 ~~~Al~l~P~~~~-----~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~-------------~~~~~A~~~~~~al~~~  260 (524)
                      |++++.+.|+++.     +.++|.++.+.|++++|+..|++++...|...             +++++|+..|+++++..
T Consensus       280 ~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~  359 (450)
T 2y4t_A          280 YESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN  359 (450)
T ss_dssp             HHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred             HHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence            8888888888742     67788888888888888888888877666553             77888888888999999


Q ss_pred             CCCHHHHHHHHHHHHH
Q 009850          261 KDLESEMMNKGGDRVE  276 (524)
Q Consensus       261 p~~~~a~~~lg~~~~~  276 (524)
                      |++..++..++.+...
T Consensus       360 p~~~~~~~~l~~~~~~  375 (450)
T 2y4t_A          360 ENDQQIREGLEKAQRL  375 (450)
T ss_dssp             SSCHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHH
Confidence            9999999999965443

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.85  E-value=2e-19  Score=178.31  Aligned_cols=202  Identities=12%  Similarity=0.039  Sum_probs=162.0

Q ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 009850           46 DTPYVRAKNVQLVDKDPEKAIPLFWAAINA--GDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILL  123 (524)
Q Consensus        46 ~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~--~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg  123 (524)
                      ..++..++..+...|++++|+..+++++..  +|+++.+++.+|.++...|++++|+..|++     |++.  .++..+|
T Consensus        65 ~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~--~~~~~l~  137 (291)
T 3mkr_A           65 LQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSL--ECMAMTV  137 (291)
T ss_dssp             HHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSH--HHHHHHH
T ss_pred             HHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCH--HHHHHHH
Confidence            345666777777788888888888888765  588888888888888888888888888877     6665  5667778


Q ss_pred             HHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHH--HHHHcCCHHHHHHHHHH
Q 009850          124 DLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGW--ALMQQNNYIEAEDAYRR  201 (524)
Q Consensus       124 ~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~--~~~~~g~~~eAi~~~~~  201 (524)
                      .+|...|++++|+..|+++++.                          +|++.......++  ++...|++++|+..|++
T Consensus       138 ~~~~~~g~~~~A~~~l~~~~~~--------------------------~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~  191 (291)
T 3mkr_A          138 QILLKLDRLDLARKELKKMQDQ--------------------------DEDATLTQLATAWVSLAAGGEKLQDAYYIFQE  191 (291)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH--------------------------CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHhh--------------------------CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence            8888888888888888888877                          6776544433332  23344788888888888


Q ss_pred             HHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 009850          202 ALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRL  280 (524)
Q Consensus       202 Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~  280 (524)
                      +++..|+++. |+++|.++..+|++++|+..|+                     +++...|+++.++.++|.++...|++
T Consensus       192 ~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~---------------------~al~~~p~~~~~l~~l~~~~~~~g~~  250 (291)
T 3mkr_A          192 MADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQ---------------------EALDKDSGHPETLINLVVLSQHLGKP  250 (291)
T ss_dssp             HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHH---------------------HHHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred             HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH---------------------HHHHhCCCCHHHHHHHHHHHHHcCCC
Confidence            8888888888 8888888888888888888888                     88999999999999999999999999


Q ss_pred             HHH-HHHHhhcccCCCCCCCcc
Q 009850          281 FDA-FLGSSSIWQPQPCKDHIL  301 (524)
Q Consensus       281 ~eA-i~~~~~al~~~P~~~~~l  301 (524)
                      .++ ...++++++.+|.++.+.
T Consensus       251 ~eaa~~~~~~~~~~~P~~~~~~  272 (291)
T 3mkr_A          251 PEVTNRYLSQLKDAHRSHPFIK  272 (291)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHHHhCCCChHHH
Confidence            875 578899999999987644

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.84  E-value=7.9e-20  Score=173.20  Aligned_cols=177  Identities=11%  Similarity=-0.003  Sum_probs=160.9

Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhc
Q 009850           76 GDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCS-DQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNG  154 (524)
Q Consensus        76 ~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p-~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~  154 (524)
                      .+.++.+++.+|.++...|++++|+..|++++..+| .+.  .+++.+|.++...|++++|+..|++++..         
T Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~~~~~~~~~A~~~~~~al~~---------   71 (228)
T 4i17_A            3 QTTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDS--VTAYNCGVCADNIKKYKEAADYFDIAIKK---------   71 (228)
T ss_dssp             -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHT---------
T ss_pred             cccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCc--HHHHHHHHHHHHhhcHHHHHHHHHHHHHh---------
Confidence            356779999999999999999999999999999998 776  56677999999999999999999999998         


Q ss_pred             ccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH-------H-HHHHHHHHHHcCCHH
Q 009850          155 KRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNN-------K-MCNLGICLMKQGRIG  226 (524)
Q Consensus       155 ~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~-------~-~~~Lg~~~~~~G~~~  226 (524)
                                       +|++..++..+|.++...|++++|+..|+++++++|+++       . |+++|.++..+|+++
T Consensus        72 -----------------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~  134 (228)
T 4i17_A           72 -----------------NYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIE  134 (228)
T ss_dssp             -----------------TCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             -----------------CcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHH
Confidence                             899999999999999999999999999999999999997       5 889999999999999


Q ss_pred             HHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCH------------------------
Q 009850          227 EAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKD--LESEMMNKGGDRVEQSRL------------------------  280 (524)
Q Consensus       227 eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~a~~~lg~~~~~~g~~------------------------  280 (524)
                      +|+..|+                     ++++..|+  .+.+++++|.+|..+|+.                        
T Consensus       135 ~A~~~~~---------------------~al~~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  193 (228)
T 4i17_A          135 KAEENYK---------------------HATDVTSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKAD  193 (228)
T ss_dssp             HHHHHHH---------------------HHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHH---------------------HHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHH
Confidence            9999999                     66667777  777888888888888777                        


Q ss_pred             ---HHHHHHHhhcccCCCCCCCcc
Q 009850          281 ---FDAFLGSSSIWQPQPCKDHIL  301 (524)
Q Consensus       281 ---~eAi~~~~~al~~~P~~~~~l  301 (524)
                         ++|+..|+++++.+|.+....
T Consensus       194 ~~~~~A~~~~~~a~~l~p~~~~~~  217 (228)
T 4i17_A          194 AAFKKAVDYLGEAVTLSPNRTEIK  217 (228)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHHHhhcCCCCHHHH
Confidence               999999999999999987644

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.84  E-value=9.7e-20  Score=176.56  Aligned_cols=212  Identities=12%  Similarity=0.016  Sum_probs=168.0

Q ss_pred             cCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-HH
Q 009850           41 KVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRV---DSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQA-QE  116 (524)
Q Consensus        41 ~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~---~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~-~~  116 (524)
                      ..+..+..++.+|..++..|++++|+..|++++...|++   ..+++.+|.++..+|++++|+..|++++..+|+++ ..
T Consensus        10 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~   89 (261)
T 3qky_A           10 LRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVP   89 (261)
T ss_dssp             -CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhH
Confidence            346678899999999999999999999999999999998   99999999999999999999999999999999653 24


Q ss_pred             HHHHHHHHHHHH--------cCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHH
Q 009850          117 SLDNILLDLYKR--------CGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQ  188 (524)
Q Consensus       117 ~l~~~lg~~~~~--------~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~  188 (524)
                      .+++.+|.++..        .|++++|+..|++++...+.......     +.....    ...+.....++.+|.+|..
T Consensus        90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~-----a~~~~~----~~~~~~~~~~~~la~~~~~  160 (261)
T 3qky_A           90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDD-----ATQKIR----ELRAKLARKQYEAARLYER  160 (261)
T ss_dssp             HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHH-----HHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHH-----HHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence            678899999999        99999999999999998433211110     000000    0011122334899999999


Q ss_pred             cCCHHHHHHHHHHHHhhCCCc---HH-HHHHHHHHHHc----------CCHHHHHHHHHHhcccccCCCcCHHHHHHHHH
Q 009850          189 QNNYIEAEDAYRRALSIAPDN---NK-MCNLGICLMKQ----------GRIGEAKETLRRVKPAVADGPRGVDSHLKAYE  254 (524)
Q Consensus       189 ~g~~~eAi~~~~~Al~l~P~~---~~-~~~Lg~~~~~~----------G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~  254 (524)
                      .|+|++|+..|++++...|++   .. ++.+|.+|..+          |++++|+..|+                     
T Consensus       161 ~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~---------------------  219 (261)
T 3qky_A          161 RELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYE---------------------  219 (261)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHH---------------------
T ss_pred             ccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHH---------------------
Confidence            999999999999999999984   44 89999999987          78888888888                     


Q ss_pred             HHHHhCCCCH---HHHHHHHHHHHHcCCHHH
Q 009850          255 RAQQMLKDLE---SEMMNKGGDRVEQSRLFD  282 (524)
Q Consensus       255 ~al~~~p~~~---~a~~~lg~~~~~~g~~~e  282 (524)
                      +++...|+.+   .+...++.++...+++++
T Consensus       220 ~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~  250 (261)
T 3qky_A          220 RLLQIFPDSPLLRTAEELYTRARQRLTELEG  250 (261)
T ss_dssp             HHHHHCTTCTHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHCCCChHHHHHHHHHHHHHHHHHHhhh
Confidence            6666677664   455666667766666554

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.84  E-value=1.3e-20  Score=185.35  Aligned_cols=237  Identities=21%  Similarity=0.226  Sum_probs=187.9

Q ss_pred             CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---
Q 009850           42 VPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINA--------GDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRC---  110 (524)
Q Consensus        42 ~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~--------~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~---  110 (524)
                      .|....+++.+|.++...|++++|+.+|++++..        .|....++..+|.++...|++++|+.+|++++...   
T Consensus        23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  102 (311)
T 3nf1_A           23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT  102 (311)
T ss_dssp             SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence            3455667999999999999999999999999994        67778899999999999999999999999999884   


Q ss_pred             --CC-cHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHH
Q 009850          111 --SD-QAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALM  187 (524)
Q Consensus       111 --p~-~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~  187 (524)
                        ++ .....++..+|.+|...|++++|+.+|++++.+.....                  -...|....++.++|.++.
T Consensus       103 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~------------------~~~~~~~~~~~~~la~~~~  164 (311)
T 3nf1_A          103 LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL------------------GKDHPDVAKQLNNLALLCQ  164 (311)
T ss_dssp             HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH------------------CTTCHHHHHHHHHHHHHHH
T ss_pred             hCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhc------------------CCCChHHHHHHHHHHHHHH
Confidence              22 22246788999999999999999999999998721100                  0113455788999999999


Q ss_pred             HcCCHHHHHHHHHHHHhh--------CCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCC----------------
Q 009850          188 QQNNYIEAEDAYRRALSI--------APDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADG----------------  242 (524)
Q Consensus       188 ~~g~~~eAi~~~~~Al~l--------~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~----------------  242 (524)
                      ..|++++|+.+|++++.+        .|.... +.++|.++..+|++++|+.+|++++...+..                
T Consensus       165 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~  244 (311)
T 3nf1_A          165 NQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHA  244 (311)
T ss_dssp             TTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHH
Confidence            999999999999999998        555555 8899999999999999999999986532210                


Q ss_pred             ------------CcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCC
Q 009850          243 ------------PRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPC  296 (524)
Q Consensus       243 ------------~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~  296 (524)
                                  .+.+.++...+.++....|....++..+|.+|..+|++++|+..|++++++.|.
T Consensus       245 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~  310 (311)
T 3nf1_A          245 EEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ  310 (311)
T ss_dssp             HHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence                        012223345566777778888999999999999999999999999999987664

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.84  E-value=6.1e-20  Score=194.64  Aligned_cols=192  Identities=14%  Similarity=0.060  Sum_probs=180.4

Q ss_pred             CChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHH
Q 009850           60 KDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRA-EEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIAL  138 (524)
Q Consensus        60 g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~-~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~  138 (524)
                      +.+++|+..+.+.....|.++.+++.+|.++...|++ ++|+.+|+++++++|+++  .++..+|.+|...|++++|+.+
T Consensus        82 ~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~--~a~~~lg~~~~~~g~~~~A~~~  159 (474)
T 4abn_A           82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELV--EAWNQLGEVYWKKGDVTSAHTC  159 (474)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHHcCCHHHHHHH
Confidence            3477888888888888999999999999999999999 999999999999999997  7889999999999999999999


Q ss_pred             HHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhhCCCc
Q 009850          139 LKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQ---------NNYIEAEDAYRRALSIAPDN  209 (524)
Q Consensus       139 ~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~---------g~~~eAi~~~~~Al~l~P~~  209 (524)
                      |++++++                          +|+ ..++.++|.++...         |++++|+.+|+++++++|++
T Consensus       160 ~~~al~~--------------------------~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~  212 (474)
T 4abn_A          160 FSGALTH--------------------------CKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLD  212 (474)
T ss_dssp             HHHHHTT--------------------------CCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHhh--------------------------CCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCC
Confidence            9999998                          888 69999999999999         99999999999999999999


Q ss_pred             HH-HHHHHHHHHHc--------CCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHc
Q 009850          210 NK-MCNLGICLMKQ--------GRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLK---DLESEMMNKGGDRVEQ  277 (524)
Q Consensus       210 ~~-~~~Lg~~~~~~--------G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p---~~~~a~~~lg~~~~~~  277 (524)
                      .. |+++|.+|..+        |++++|+.+|+                     +++...|   +.+.+++++|.+|..+
T Consensus       213 ~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~---------------------~al~~~p~~~~~~~~~~~lg~~~~~~  271 (474)
T 4abn_A          213 GRSWYILGNAYLSLYFNTGQNPKISQQALSAYA---------------------QAEKVDRKASSNPDLHLNRATLHKYE  271 (474)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH---------------------HHHHHCGGGGGCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhhccccchHHHHHHHHH---------------------HHHHhCCCcccCHHHHHHHHHHHHHc
Confidence            99 99999999999        88888888888                     7888889   9999999999999999


Q ss_pred             CCHHHHHHHHhhcccCCCCCCCcc
Q 009850          278 SRLFDAFLGSSSIWQPQPCKDHIL  301 (524)
Q Consensus       278 g~~~eAi~~~~~al~~~P~~~~~l  301 (524)
                      |++++|+..|+++++.+|.+....
T Consensus       272 g~~~~A~~~~~~al~l~p~~~~a~  295 (474)
T 4abn_A          272 ESYGEALEGFSQAAALDPAWPEPQ  295 (474)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHH
Confidence            999999999999999999987644

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.83  E-value=5.3e-19  Score=168.97  Aligned_cols=177  Identities=13%  Similarity=0.093  Sum_probs=157.7

Q ss_pred             hhhhhhHHH-HhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc-------HHHHHHHHHHHHHcCCHHHHHH
Q 009850           30 RTRSDSFHA-IHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRV-------DSALKDMAIVMKQQNRAEEAIE  101 (524)
Q Consensus        30 ~~~~~~~~~-~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~-------~~a~~~La~~~~~~g~~~eAi~  101 (524)
                      ..+...+.. +... ....+|+.+|.++...|++++|+..|++++...|++       ..++..+|.++...|++++|+.
T Consensus        22 ~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  100 (258)
T 3uq3_A           22 DEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIE  100 (258)
T ss_dssp             HHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHH
Confidence            334444433 3334 778899999999999999999999999999998876       7999999999999999999999


Q ss_pred             HHHHHHHhCC--------------------------CcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcc
Q 009850          102 AIKSLRSRCS--------------------------DQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGK  155 (524)
Q Consensus       102 ~~~~al~~~p--------------------------~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~  155 (524)
                      +|++++.+.|                          .++  .++..+|.++...|++++|+..|++++..          
T Consensus       101 ~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~A~~~~~~a~~~----------  168 (258)
T 3uq3_A          101 YYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKA--EEARLEGKEYFTKSDWPNAVKAYTEMIKR----------  168 (258)
T ss_dssp             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------
T ss_pred             HHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchH--HHHHHHHHHHHHhcCHHHHHHHHHHHHhc----------
Confidence            9999999554                          333  67788899999999999999999999988          


Q ss_pred             cHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHH
Q 009850          156 RTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRR  234 (524)
Q Consensus       156 ~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~  234 (524)
                                      +|.++.++..+|.++...|++++|+.+|+++++.+|++.. ++.+|.++..+|++++|+.+|++
T Consensus       169 ----------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  232 (258)
T 3uq3_A          169 ----------------APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDA  232 (258)
T ss_dssp             ----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ----------------CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence                            8999999999999999999999999999999999999999 99999999999999999999995


Q ss_pred             h
Q 009850          235 V  235 (524)
Q Consensus       235 a  235 (524)
                      +
T Consensus       233 a  233 (258)
T 3uq3_A          233 A  233 (258)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.83  E-value=1.7e-19  Score=174.65  Aligned_cols=221  Identities=10%  Similarity=0.058  Sum_probs=186.5

Q ss_pred             hhhhhhhHH-HHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc----HHHHHHHHHHHHHcCCHHHHHHHH
Q 009850           29 SRTRSDSFH-AIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRV----DSALKDMAIVMKQQNRAEEAIEAI  103 (524)
Q Consensus        29 l~~~~~~~~-~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~----~~a~~~La~~~~~~g~~~eAi~~~  103 (524)
                      ...+...+. ++...|....+++.+|.++...|++++|+..|++++. .|.+    ..++..+|.++...|++++|+.+|
T Consensus        19 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~   97 (272)
T 3u4t_A           19 YAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQY   97 (272)
T ss_dssp             HHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence            344444444 4456788888999999999999999999999999999 4333    455999999999999999999999


Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHH
Q 009850          104 KSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLG  183 (524)
Q Consensus       104 ~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg  183 (524)
                      ++++..+|.+.  .++..+|.+|...|++++|+.+|++++++                          +|.++.+++++|
T Consensus        98 ~~a~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------------------------~~~~~~~~~~l~  149 (272)
T 3u4t_A           98 QAAVDRDTTRL--DMYGQIGSYFYNKGNFPLAIQYMEKQIRP--------------------------TTTDPKVFYELG  149 (272)
T ss_dssp             HHHHHHSTTCT--HHHHHHHHHHHHTTCHHHHHHHHGGGCCS--------------------------SCCCHHHHHHHH
T ss_pred             HHHHhcCcccH--HHHHHHHHHHHHccCHHHHHHHHHHHhhc--------------------------CCCcHHHHHHHH
Confidence            99999999987  78899999999999999999999999988                          899999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCC---HHHHHHHHHHhcccc---cCC--------------
Q 009850          184 WALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGR---IGEAKETLRRVKPAV---ADG--------------  242 (524)
Q Consensus       184 ~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~---~~eA~~~~~~a~~~~---~~~--------------  242 (524)
                      ...+..+++++|+..|+++++++|++.. ++.+|.++..+|+   +++|+..|+++....   ++.              
T Consensus       150 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  229 (272)
T 3u4t_A          150 QAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAY  229 (272)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHH
Confidence            5555567999999999999999999988 9999999999999   888999999985443   321              


Q ss_pred             ----CcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 009850          243 ----PRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQS  278 (524)
Q Consensus       243 ----~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g  278 (524)
                          .+++++|+..|++++...|+++.++-.++.+....+
T Consensus       230 ~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~  269 (272)
T 3u4t_A          230 YYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH  269 (272)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence                178899999999999999999999998887765443

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.83  E-value=7.7e-20  Score=202.42  Aligned_cols=197  Identities=13%  Similarity=-0.032  Sum_probs=176.5

Q ss_pred             CCCChHHHHHHHHHHHHcCChHHHHHHHHHHH--------HcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 009850           42 VPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAI--------NAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQ  113 (524)
Q Consensus        42 ~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al--------~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~  113 (524)
                      .|..+.+++..|   +..|++++|+..|++++        ..+|++..+++.+|.++..+|++++|+..|+++++.+|++
T Consensus       390 ~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~  466 (681)
T 2pzi_A          390 DPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWR  466 (681)
T ss_dssp             CTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCC
T ss_pred             CCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcch
Confidence            355666777666   78999999999999999        8999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Q 009850          114 AQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYI  193 (524)
Q Consensus       114 ~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~  193 (524)
                      .  .+++.+|.+|...|++++|+..|++++++                          +|+++.+++++|.++...|+++
T Consensus       467 ~--~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------------------------~P~~~~~~~~lg~~~~~~g~~~  518 (681)
T 2pzi_A          467 W--RLVWYRAVAELLTGDYDSATKHFTEVLDT--------------------------FPGELAPKLALAATAELAGNTD  518 (681)
T ss_dssp             H--HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------------------------STTCSHHHHHHHHHHHHHTCCC
T ss_pred             H--HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------------------CCCChHHHHHHHHHHHHcCChH
Confidence            7  78899999999999999999999999999                          9999999999999999999999


Q ss_pred             HHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 009850          194 EAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGG  272 (524)
Q Consensus       194 eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~  272 (524)
                      + +.+|+++++++|++.. |+++|.++..+|++++|+..|+                     +++++.|++..+++++|.
T Consensus       519 ~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~---------------------~al~l~P~~~~a~~~~~~  576 (681)
T 2pzi_A          519 E-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLD---------------------EVPPTSRHFTTARLTSAV  576 (681)
T ss_dssp             T-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH---------------------TSCTTSTTHHHHHHHHHH
T ss_pred             H-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHH---------------------hhcccCcccHHHHHHHHH
Confidence            9 9999999999999999 9999999999999999999999                     677888999999999999


Q ss_pred             HHHHcCC--------HHHHHHHHhhcc
Q 009850          273 DRVEQSR--------LFDAFLGSSSIW  291 (524)
Q Consensus       273 ~~~~~g~--------~~eAi~~~~~al  291 (524)
                      ++...++        +.+|+..+..+.
T Consensus       577 ~~~~~~~~~~~~~~~~~~A~~~l~~~~  603 (681)
T 2pzi_A          577 TLLSGRSTSEVTEEQIRDAARRVEALP  603 (681)
T ss_dssp             HTC-------CCHHHHHHHHHHHHTSC
T ss_pred             HHHccCCCCCCCHHHHHHHHHHHhhCC
Confidence            9977665        555555555443

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.82  E-value=5.4e-19  Score=170.98  Aligned_cols=202  Identities=11%  Similarity=-0.015  Sum_probs=166.1

Q ss_pred             hhhhHH-HHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 009850           32 RSDSFH-AIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRC  110 (524)
Q Consensus        32 ~~~~~~-~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~  110 (524)
                      +...+. ++...|....+|+.+|.++...|++++|+.+|++++..+|++..++..+|.++...|++++|+..|++++...
T Consensus        62 A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  141 (275)
T 1xnf_A           62 ARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD  141 (275)
T ss_dssp             HHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence            333343 4456788899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 009850          111 SDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQN  190 (524)
Q Consensus       111 p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g  190 (524)
                      |++....  ..+ .++...|++++|+..+++++..                          .|.+...+ .++.++...+
T Consensus       142 ~~~~~~~--~~~-~~~~~~~~~~~A~~~~~~~~~~--------------------------~~~~~~~~-~~~~~~~~~~  191 (275)
T 1xnf_A          142 PNDPFRS--LWL-YLAEQKLDEKQAKEVLKQHFEK--------------------------SDKEQWGW-NIVEFYLGNI  191 (275)
T ss_dssp             TTCHHHH--HHH-HHHHHHHCHHHHHHHHHHHHHH--------------------------SCCCSTHH-HHHHHHTTSS
T ss_pred             CCChHHH--HHH-HHHHHhcCHHHHHHHHHHHHhc--------------------------CCcchHHH-HHHHHHHHhc
Confidence            9986322  222 3446679999999999999887                          66665554 4777888899


Q ss_pred             CHHHHHHHHHHHHhhCCCc----HH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHH
Q 009850          191 NYIEAEDAYRRALSIAPDN----NK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLES  265 (524)
Q Consensus       191 ~~~eAi~~~~~Al~l~P~~----~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~  265 (524)
                      ++++|+..+++++...|..    .. +..+|.++..+|++++|+.+|+                     +++...|++. 
T Consensus       192 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~---------------------~al~~~p~~~-  249 (275)
T 1xnf_A          192 SEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFK---------------------LAVANNVHNF-  249 (275)
T ss_dssp             CHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH---------------------HHHTTCCTTC-
T ss_pred             CHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHH---------------------HHHhCCchhH-
Confidence            9999999999999887754    44 8999999999999999999999                     5666666553 


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHH
Q 009850          266 EMMNKGGDRVEQSRLFDAFLGS  287 (524)
Q Consensus       266 a~~~lg~~~~~~g~~~eAi~~~  287 (524)
                        ...+.++...|++++|+.+|
T Consensus       250 --~~~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          250 --VEHRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             --HHHHHHHHHHHHHHHC----
T ss_pred             --HHHHHHHHHHHHHHhhHHHH
Confidence              33477888899999998887

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.82  E-value=1e-18  Score=174.10  Aligned_cols=216  Identities=7%  Similarity=-0.085  Sum_probs=192.4

Q ss_pred             HHHhcCCCChHHHHHHHHHHHH-------cCCh-------HHHHHHHHHHHH-cCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 009850           37 HAIHKVPVGDTPYVRAKNVQLV-------DKDP-------EKAIPLFWAAIN-AGDRVDSALKDMAIVMKQQNRAEEAIE  101 (524)
Q Consensus        37 ~~~~~~p~~~~~~~~lg~~~~~-------~g~~-------~~Ai~~~~~al~-~~p~~~~a~~~La~~~~~~g~~~eAi~  101 (524)
                      +++...|..++.|+.+|..+..       .|++       ++|+..|++++. ++|++..+|..+|.++...|++++|..
T Consensus        41 ~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~  120 (308)
T 2ond_A           41 QCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHS  120 (308)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHH
Confidence            4556689999999999999874       5886       999999999999 799999999999999999999999999


Q ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHH
Q 009850          102 AIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGN  181 (524)
Q Consensus       102 ~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~  181 (524)
                      .|++++++.|.++. .++..+|.++.+.|++++|+..|+++++.                          +|....+|..
T Consensus       121 ~~~~al~~~p~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------------------------~p~~~~~~~~  173 (308)
T 2ond_A          121 IYNRLLAIEDIDPT-LVYIQYMKFARRAEGIKSGRMIFKKARED--------------------------ARTRHHVYVT  173 (308)
T ss_dssp             HHHHHHTSSSSCTH-HHHHHHHHHHHHHHCHHHHHHHHHHHHTS--------------------------TTCCTHHHHH
T ss_pred             HHHHHHhccccCcc-HHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------------------------CCCCHHHHHH
Confidence            99999999998762 27888999999999999999999999988                          7888778877


Q ss_pred             HHHHHHH-cCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHh
Q 009850          182 LGWALMQ-QNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQM  259 (524)
Q Consensus       182 Lg~~~~~-~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~  259 (524)
                      .+.+... .|++++|+.+|+++++.+|+++. |.++|..+..+|++++|+..|+                     +++..
T Consensus       174 ~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~---------------------~al~~  232 (308)
T 2ond_A          174 AALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFE---------------------RVLTS  232 (308)
T ss_dssp             HHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHH---------------------HHHHS
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHH---------------------HHHhc
Confidence            6666544 79999999999999999999999 9999999999999999999999                     55663


Q ss_pred             ---CC-CCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCc
Q 009850          260 ---LK-DLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHI  300 (524)
Q Consensus       260 ---~p-~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~  300 (524)
                         .| +....|..++..+...|++++|...++++++..|.+...
T Consensus       233 ~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~~  277 (308)
T 2ond_A          233 GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEG  277 (308)
T ss_dssp             SSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSS
T ss_pred             cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccccccc
Confidence               44 367889999999999999999999999999999987653

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.82  E-value=3e-19  Score=167.67  Aligned_cols=168  Identities=14%  Similarity=0.109  Sum_probs=147.6

Q ss_pred             ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHH
Q 009850           45 GDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKD----------------MAIVMKQQNRAEEAIEAIKSLRS  108 (524)
Q Consensus        45 ~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~----------------La~~~~~~g~~~eAi~~~~~al~  108 (524)
                      ..+.++..|..++..|++++|+.+|++++..+|+++.+++.                +|.++...|++++|+..|+++++
T Consensus         3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   82 (208)
T 3urz_A            3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ   82 (208)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            45678899999999999999999999999999999999999                99999999999999999999999


Q ss_pred             hCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHH
Q 009850          109 RCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQ  188 (524)
Q Consensus       109 ~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~  188 (524)
                      ++|+++  .++..+|.+|...|++++|+.+|++++++                          +|+++.+++++|.+|..
T Consensus        83 ~~p~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------------------------~P~~~~a~~~lg~~~~~  134 (208)
T 3urz_A           83 KAPNNV--DCLEACAEMQVCRGQEKDALRMYEKILQL--------------------------EADNLAANIFLGNYYYL  134 (208)
T ss_dssp             HCTTCH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------------------------CTTCHHHHHHHHHHHHH
T ss_pred             HCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------------------------CCCCHHHHHHHHHHHHH
Confidence            999997  78899999999999999999999999999                          99999999999999987


Q ss_pred             cCC--HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHcCCHHHHHHHHHHhccccc
Q 009850          189 QNN--YIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVA  240 (524)
Q Consensus       189 ~g~--~~eAi~~~~~Al~l~P~~~~~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~  240 (524)
                      .|+  ...+...|++++...|....++++|.++..+|++++|+.+|++++...|
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P  188 (208)
T 3urz_A          135 TAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFP  188 (208)
T ss_dssp             HHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSC
T ss_pred             HhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence            764  5667888888875433332388899999999999999999995544444

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.81  E-value=3.7e-18  Score=169.10  Aligned_cols=191  Identities=15%  Similarity=0.144  Sum_probs=167.2

Q ss_pred             CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 009850           42 VPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNI  121 (524)
Q Consensus        42 ~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~  121 (524)
                      .|..+..++.+|.++...|++++|+..|++     |++.+++..+|.++..+|++++|+..|+++++.+|++....+...
T Consensus        97 ~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a  171 (291)
T 3mkr_A           97 DVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATA  171 (291)
T ss_dssp             CCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHH
Confidence            488999999999999999999999999998     899999999999999999999999999999999999864343333


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 009850          122 LLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRR  201 (524)
Q Consensus       122 lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~  201 (524)
                      +..++...|++++|+.+|++++..                          +|+++.+++++|.++...|++++|+..|++
T Consensus       172 ~~~l~~~~~~~~eA~~~~~~~l~~--------------------------~p~~~~~~~~la~~~~~~g~~~eA~~~l~~  225 (291)
T 3mkr_A          172 WVSLAAGGEKLQDAYYIFQEMADK--------------------------CSPTLLLLNGQAACHMAQGRWEAAEGVLQE  225 (291)
T ss_dssp             HHHHHHCTTHHHHHHHHHHHHHHH--------------------------SCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHhCchHHHHHHHHHHHHHHh--------------------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            445555669999999999999998                          899999999999999999999999999999


Q ss_pred             HHhhCCCcHH-HHHHHHHHHHcCCHHHH-HHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 009850          202 ALSIAPDNNK-MCNLGICLMKQGRIGEA-KETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSR  279 (524)
Q Consensus       202 Al~l~P~~~~-~~~Lg~~~~~~G~~~eA-~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~  279 (524)
                      ++.++|+++. +.++|.++..+|++.++ ..+++                     ++++..|+++.+.    ....+.+.
T Consensus       226 al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~---------------------~~~~~~P~~~~~~----d~~~~~~~  280 (291)
T 3mkr_A          226 ALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLS---------------------QLKDAHRSHPFIK----EYRAKEND  280 (291)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHH---------------------HHHHHCTTCHHHH----HHHHHHHH
T ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHH---------------------HHHHhCCCChHHH----HHHHHHHH
Confidence            9999999999 99999999999999875 56767                     7788888887654    34566677


Q ss_pred             HHHHHHHHh
Q 009850          280 LFDAFLGSS  288 (524)
Q Consensus       280 ~~eAi~~~~  288 (524)
                      ++++...|.
T Consensus       281 fd~~~~~~~  289 (291)
T 3mkr_A          281 FDRLVLQYA  289 (291)
T ss_dssp             HHHHHHHHS
T ss_pred             HHHHHHHcC
Confidence            777777664

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.81  E-value=2e-18  Score=155.96  Aligned_cols=168  Identities=16%  Similarity=0.154  Sum_probs=157.9

Q ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 009850           46 DTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDL  125 (524)
Q Consensus        46 ~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~  125 (524)
                      ...|+.+|.++...|++++|+..|++++...|.+..++..+|.++...|++++|+.++++++...|++.  .++..+|.+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~a~~   85 (186)
T 3as5_A            8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNV--KVATVLGLT   85 (186)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH--HHHHHHHHH
Confidence            456889999999999999999999999999999999999999999999999999999999999999887  677889999


Q ss_pred             HHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 009850          126 YKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSI  205 (524)
Q Consensus       126 ~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l  205 (524)
                      +...|++++|+.+|++++..                          +|.+..++..+|.++...|++++|+.+|++++..
T Consensus        86 ~~~~~~~~~A~~~~~~~~~~--------------------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~  139 (186)
T 3as5_A           86 YVQVQKYDLAVPLLIKVAEA--------------------------NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGL  139 (186)
T ss_dssp             HHHHTCHHHHHHHHHHHHHH--------------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHhc--------------------------CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc
Confidence            99999999999999999998                          8999999999999999999999999999999999


Q ss_pred             CCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccC
Q 009850          206 APDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVAD  241 (524)
Q Consensus       206 ~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~  241 (524)
                      .|++.. +..+|.++...|++++|+.+++++....++
T Consensus       140 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  176 (186)
T 3as5_A          140 RPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEG  176 (186)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHC
T ss_pred             CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence            999988 999999999999999999999976544433

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.81  E-value=1.2e-17  Score=159.85  Aligned_cols=169  Identities=13%  Similarity=0.061  Sum_probs=159.2

Q ss_pred             HHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHH
Q 009850           38 AIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRS--RCSDQAQ  115 (524)
Q Consensus        38 ~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~--~~p~~~~  115 (524)
                      ++...|....+++.+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+.+|++++.  ..|.+. 
T Consensus        63 al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-  141 (252)
T 2ho1_A           63 ALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERS-  141 (252)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHH-
T ss_pred             HHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccH-
Confidence            44556788899999999999999999999999999999999999999999999999999999999999999  667665 


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Q 009850          116 ESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEA  195 (524)
Q Consensus       116 ~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eA  195 (524)
                       .++..+|.++...|++++|+.+|+++++.                          +|.+..++..+|.++...|++++|
T Consensus       142 -~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------------------------~~~~~~~~~~la~~~~~~g~~~~A  194 (252)
T 2ho1_A          142 -RVFENLGLVSLQMKKPAQAKEYFEKSLRL--------------------------NRNQPSVALEMADLLYKEREYVPA  194 (252)
T ss_dssp             -HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------------CSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             -HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------------------------CcccHHHHHHHHHHHHHcCCHHHH
Confidence             67788999999999999999999999998                          899999999999999999999999


Q ss_pred             HHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHH
Q 009850          196 EDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRR  234 (524)
Q Consensus       196 i~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~  234 (524)
                      +.+|++++...|++.. +..++.++...|++++|..++++
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~  234 (252)
T 2ho1_A          195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQ  234 (252)
T ss_dssp             HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            9999999999999988 99999999999999999999994

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.80  E-value=8.4e-20  Score=162.47  Aligned_cols=146  Identities=12%  Similarity=0.025  Sum_probs=134.2

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcC
Q 009850           51 RAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCG  130 (524)
Q Consensus        51 ~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g  130 (524)
                      .||.++..+|++++|+..+++++..+|+++.+++.+|.+|...|++++|+.+|+++++++|+++  .++..+|.+|...|
T Consensus         2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~--~a~~~lg~~~~~~~   79 (150)
T 4ga2_A            2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDP--KAHRFLGLLYELEE   79 (150)
T ss_dssp             -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTT
T ss_pred             HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcC
Confidence            4788889999999999999999999999999999999999999999999999999999999998  78899999999999


Q ss_pred             ChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH-HHHHHhhCCCc
Q 009850          131 RLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDA-YRRALSIAPDN  209 (524)
Q Consensus       131 ~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~-~~~Al~l~P~~  209 (524)
                      ++++|+.+|++++++                          +|+++.+++++|.+|...|++++|... ++++++++|++
T Consensus        80 ~~~~A~~~~~~al~~--------------------------~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~  133 (150)
T 4ga2_A           80 NTDKAVECYRRSVEL--------------------------NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGS  133 (150)
T ss_dssp             CHHHHHHHHHHHHHH--------------------------CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTC
T ss_pred             chHHHHHHHHHHHHh--------------------------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCC
Confidence            999999999999999                          999999999999999999999887766 59999999999


Q ss_pred             HH-HHHHHHHHHHcCC
Q 009850          210 NK-MCNLGICLMKQGR  224 (524)
Q Consensus       210 ~~-~~~Lg~~~~~~G~  224 (524)
                      +. +..++.++...|+
T Consensus       134 ~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A          134 PAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             HHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHHHhCc
Confidence            99 8888999888875

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.80  E-value=1e-18  Score=179.79  Aligned_cols=232  Identities=16%  Similarity=0.102  Sum_probs=169.7

Q ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---C-cHHHH
Q 009850           46 DTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVD----SALKDMAIVMKQQNRAEEAIEAIKSLRSRCS---D-QAQES  117 (524)
Q Consensus        46 ~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~----~a~~~La~~~~~~g~~~eAi~~~~~al~~~p---~-~~~~~  117 (524)
                      ...++.+|..++..|++++|+.+|++++...|++.    .++..+|.++...|++++|+.+|++++.+..   + .....
T Consensus        48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  127 (411)
T 4a1s_A           48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK  127 (411)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence            34577899999999999999999999999999987    5799999999999999999999999988731   1 12247


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCC------
Q 009850          118 LDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNN------  191 (524)
Q Consensus       118 l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~------  191 (524)
                      ++..+|.+|...|++++|+.+|++++.+...                    ....+....++.++|.+|...|+      
T Consensus       128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~--------------------~~~~~~~~~~~~~l~~~~~~~g~~~~~~~  187 (411)
T 4a1s_A          128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQ--------------------LGDRLSEGRALYNLGNVYHAKGKHLGQRN  187 (411)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--------------------HTCHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--------------------hhchHHHHHHHHHHHHHHHHcCccccccc
Confidence            8889999999999999999999999987311                    00012334566666666666666      


Q ss_pred             -----------HHHHHHHHHHHHhhCC------CcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCC-----------
Q 009850          192 -----------YIEAEDAYRRALSIAP------DNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADG-----------  242 (524)
Q Consensus       192 -----------~~eAi~~~~~Al~l~P------~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~-----------  242 (524)
                                 +++|+.+|++++.+.+      .... +.++|.++..+|++++|+.+|++++...+..           
T Consensus       188 ~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  267 (411)
T 4a1s_A          188 PGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANS  267 (411)
T ss_dssp             TTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             chhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence                       6666666666665431      1112 5566666666666666666666654332211           


Q ss_pred             --------CcCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCC
Q 009850          243 --------PRGVDSHLKAYERAQQMLKDL------ESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCK  297 (524)
Q Consensus       243 --------~~~~~~A~~~~~~al~~~p~~------~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~  297 (524)
                              .+++++|+..|++++...+..      ..++..+|.++..+|++++|+..|++++...+..
T Consensus       268 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  336 (411)
T 4a1s_A          268 NLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL  336 (411)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence                    155566666666777666543      5678888999999999999999998888775544

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.80  E-value=8.2e-19  Score=179.27  Aligned_cols=103  Identities=15%  Similarity=0.090  Sum_probs=90.2

Q ss_pred             CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---Cc-HH
Q 009850           44 VGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVD----SALKDMAIVMKQQNRAEEAIEAIKSLRSRCS---DQ-AQ  115 (524)
Q Consensus        44 ~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~----~a~~~La~~~~~~g~~~eAi~~~~~al~~~p---~~-~~  115 (524)
                      .....++.+|..++..|++++|+.+|++++...|++.    .++..+|.++...|++++|+.++++++.+.+   +. ..
T Consensus         7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   86 (406)
T 3sf4_A            7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE   86 (406)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence            3455688999999999999999999999999999884    6788999999999999999999999988743   12 22


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Q 009850          116 ESLDNILLDLYKRCGRLDDQIALLKHKLYLI  146 (524)
Q Consensus       116 ~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~  146 (524)
                      ..++..+|.+|...|++++|+.+|++++.+.
T Consensus        87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  117 (406)
T 3sf4_A           87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDIS  117 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            4678899999999999999999999999874

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.80  E-value=8.2e-19  Score=179.86  Aligned_cols=227  Identities=14%  Similarity=0.096  Sum_probs=183.5

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHc---CC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-----HHHH
Q 009850           49 YVRAKNVQLVDKDPEKAIPLFWAAINA---GD---RVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQ-----AQES  117 (524)
Q Consensus        49 ~~~lg~~~~~~g~~~~Ai~~~~~al~~---~p---~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~-----~~~~  117 (524)
                      |+.+|..+...|++++|+.+|++++..   .+   ..+.+++.+|.+|..+|++++|+.++++++.+.+..     ....
T Consensus       106 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  185 (383)
T 3ulq_A          106 NFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQ  185 (383)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHH
Confidence            445999999999999999999999987   23   356889999999999999999999999999986532     1246


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 009850          118 LDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAED  197 (524)
Q Consensus       118 l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~  197 (524)
                      ++..+|.+|...|++++|+.+|++++.+.+..                    ...+....+++++|.+|...|++++|+.
T Consensus       186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--------------------~~~~~~~~~~~~lg~~y~~~g~~~~A~~  245 (383)
T 3ulq_A          186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAE--------------------KQPQLMGRTLYNIGLCKNSQSQYEDAIP  245 (383)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc--------------------CChHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence            78899999999999999999999999873210                    0012225689999999999999999999


Q ss_pred             HHHHHHhh-----C-CCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCC------------------CcC---HHHH
Q 009850          198 AYRRALSI-----A-PDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADG------------------PRG---VDSH  249 (524)
Q Consensus       198 ~~~~Al~l-----~-P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~------------------~~~---~~~A  249 (524)
                      +|++++.+     + |.... +.++|.++..+|++++|+.++++++......                  .+.   ..+|
T Consensus       246 ~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a  325 (383)
T 3ulq_A          246 YFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGF  325 (383)
T ss_dssp             HHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHH
T ss_pred             HHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            99999994     5 66666 9999999999999999999999986543211                  133   5556


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCC
Q 009850          250 LKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPC  296 (524)
Q Consensus       250 ~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~  296 (524)
                      +..+++. ...+....++..+|.+|..+|++++|+..|++++.....
T Consensus       326 l~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~  371 (383)
T 3ulq_A          326 FDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQL  371 (383)
T ss_dssp             HHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            6666555 334455678899999999999999999999999876544

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.80  E-value=1.7e-18  Score=171.40  Aligned_cols=215  Identities=12%  Similarity=0.061  Sum_probs=168.9

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcCC------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--H--HHH
Q 009850           48 PYVRAKNVQLVDKDPEKAIPLFWAAINAGD------RVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQ--A--QES  117 (524)
Q Consensus        48 ~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p------~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~--~--~~~  117 (524)
                      .|...|.++...|++++|+.+|.+++.+.+      ....++.++|.+|..+|++++|+.+|++++.+.+..  .  ...
T Consensus        39 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~  118 (292)
T 1qqe_A           39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN  118 (292)
T ss_dssp             HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            577788899999999999999999999742      236789999999999999999999999999998743  1  135


Q ss_pred             HHHHHHHHHHHc-CChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHH
Q 009850          118 LDNILLDLYKRC-GRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQ-EATRLLGNLGWALMQQNNYIEA  195 (524)
Q Consensus       118 l~~~lg~~~~~~-g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p-~~~~a~~~Lg~~~~~~g~~~eA  195 (524)
                      ++..+|.+|... |++++|+.+|++++++.+...                     ++ ....++.++|.++..+|+|++|
T Consensus       119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~---------------------~~~~~~~~~~~lg~~~~~~g~~~~A  177 (292)
T 1qqe_A          119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQ---------------------SVALSNKCFIKCADLKALDGQYIEA  177 (292)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT---------------------CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCC---------------------ChHHHHHHHHHHHHHHHHhCCHHHH
Confidence            778999999996 999999999999999832100                     00 1146789999999999999999


Q ss_pred             HHHHHHHHhhCCCcHH--------HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHH
Q 009850          196 EDAYRRALSIAPDNNK--------MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEM  267 (524)
Q Consensus       196 i~~~~~Al~l~P~~~~--------~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~  267 (524)
                      +.+|++++.+.|++..        +.++|.|+..+|++++|+.+|++++...|.....                .....+
T Consensus       178 ~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~----------------~~~~~l  241 (292)
T 1qqe_A          178 SDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS----------------RESNFL  241 (292)
T ss_dssp             HHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------------------------HHHH
T ss_pred             HHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc----------------HHHHHH
Confidence            9999999999987532        6889999999999999999999765544432210                011234


Q ss_pred             HHHHHHHH--HcCCHHHHHHHHhhcccCCCCCCC
Q 009850          268 MNKGGDRV--EQSRLFDAFLGSSSIWQPQPCKDH  299 (524)
Q Consensus       268 ~~lg~~~~--~~g~~~eAi~~~~~al~~~P~~~~  299 (524)
                      ..++..+.  ..+++.+|+..|.+++.++|....
T Consensus       242 ~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~  275 (292)
T 1qqe_A          242 KSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKIT  275 (292)
T ss_dssp             HHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHH
Confidence            45555554  457899999999999999887644

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.79  E-value=3e-18  Score=165.97  Aligned_cols=183  Identities=11%  Similarity=0.015  Sum_probs=160.8

Q ss_pred             HHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHh
Q 009850           73 INAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQ-ESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLA  151 (524)
Q Consensus        73 l~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~-~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~  151 (524)
                      ....|.++..++.+|..+...|++++|+..|++++..+|+++. ..+++.+|.+|...|++++|+..|++++...+.   
T Consensus         8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~---   84 (261)
T 3qky_A            8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQI---   84 (261)
T ss_dssp             ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCC---
Confidence            4568899999999999999999999999999999999998722 278889999999999999999999999998221   


Q ss_pred             hhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHhhCCCcHH-H----------
Q 009850          152 FNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQ--------QNNYIEAEDAYRRALSIAPDNNK-M----------  212 (524)
Q Consensus       152 ~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~--------~g~~~eAi~~~~~Al~l~P~~~~-~----------  212 (524)
                                          +|..+.+++.+|.++..        .|++++|+..|++++...|++.. +          
T Consensus        85 --------------------~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~  144 (261)
T 3qky_A           85 --------------------DPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELR  144 (261)
T ss_dssp             --------------------CTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHH
T ss_pred             --------------------CchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHH
Confidence                                23447899999999999        99999999999999999999854 3          


Q ss_pred             -------HHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHc-----
Q 009850          213 -------CNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKD---LESEMMNKGGDRVEQ-----  277 (524)
Q Consensus       213 -------~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~~~~-----  277 (524)
                             +.+|.+|..+|++++|+..|+                     +++...|+   ...+++.+|.+|..+     
T Consensus       145 ~~~~~~~~~la~~~~~~g~~~~A~~~~~---------------------~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~  203 (261)
T 3qky_A          145 AKLARKQYEAARLYERRELYEAAAVTYE---------------------AVFDAYPDTPWADDALVGAMRAYIAYAEQSV  203 (261)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHH---------------------HHHHHCTTSTTHHHHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHHHHHccCHHHHHHHHH---------------------HHHHHCCCCchHHHHHHHHHHHHHHhcccch
Confidence                   889999999999999999999                     66666676   567899999999977     


Q ss_pred             -----CCHHHHHHHHhhcccCCCCCCC
Q 009850          278 -----SRLFDAFLGSSSIWQPQPCKDH  299 (524)
Q Consensus       278 -----g~~~eAi~~~~~al~~~P~~~~  299 (524)
                           |++++|+..|+++++..|.+..
T Consensus       204 ~~~~~~~~~~A~~~~~~~~~~~p~~~~  230 (261)
T 3qky_A          204 RARQPERYRRAVELYERLLQIFPDSPL  230 (261)
T ss_dssp             GGGHHHHHHHHHHHHHHHHHHCTTCTH
T ss_pred             hhcccchHHHHHHHHHHHHHHCCCChH
Confidence                 9999999999999999998865

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.79  E-value=8.8e-19  Score=180.30  Aligned_cols=239  Identities=15%  Similarity=0.139  Sum_probs=189.0

Q ss_pred             HhcCCCCh----HHHHHHHHHHHHcCChHHHHHHHHHHHHc------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 009850           39 IHKVPVGD----TPYVRAKNVQLVDKDPEKAIPLFWAAINA------GDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRS  108 (524)
Q Consensus        39 ~~~~p~~~----~~~~~lg~~~~~~g~~~~Ai~~~~~al~~------~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~  108 (524)
                      +...|...    ..|+.+|.++...|++++|+.+|++++..      .+....++..+|.+|...|++++|+.+|++++.
T Consensus        75 l~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  154 (411)
T 4a1s_A           75 IQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLT  154 (411)
T ss_dssp             HHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            34445554    47899999999999999999999999987      577788999999999999999999999999998


Q ss_pred             hCCC----cHHHHHHHHHHHHHHHcCC-----------------hHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHH
Q 009850          109 RCSD----QAQESLDNILLDLYKRCGR-----------------LDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKF  167 (524)
Q Consensus       109 ~~p~----~~~~~l~~~lg~~~~~~g~-----------------~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~  167 (524)
                      +.+.    .....++..+|.+|...|+                 +++|+.+|++++.+...                   
T Consensus       155 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~-------------------  215 (411)
T 4a1s_A          155 LARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRD-------------------  215 (411)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHH-------------------
T ss_pred             HHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHH-------------------
Confidence            8431    1223678899999999999                 88888888888776211                   


Q ss_pred             HHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH------H-HHHHHHHHHHcCCHHHHHHHHHHhccccc
Q 009850          168 QVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNN------K-MCNLGICLMKQGRIGEAKETLRRVKPAVA  240 (524)
Q Consensus       168 ~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~------~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~  240 (524)
                       ....+....++.++|.++...|++++|+.+|++++.+.+...      . ++++|.++..+|++++|+.+|++++...+
T Consensus       216 -~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  294 (411)
T 4a1s_A          216 -LGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAV  294 (411)
T ss_dssp             -HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred             -cCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence             000133456888888888888888888888888888765431      1 67888888888888888888888755443


Q ss_pred             CC-------------------CcCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHhhcccCCC
Q 009850          241 DG-------------------PRGVDSHLKAYERAQQMLKDL------ESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQP  295 (524)
Q Consensus       241 ~~-------------------~~~~~~A~~~~~~al~~~p~~------~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P  295 (524)
                      ..                   .+++++|+..+++++...+..      ..++..+|.+|..+|++++|+..|+++++..+
T Consensus       295 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  374 (411)
T 4a1s_A          295 ELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX  374 (411)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             HcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence            22                   167788888888888875433      55899999999999999999999999988765


Q ss_pred             CC
Q 009850          296 CK  297 (524)
Q Consensus       296 ~~  297 (524)
                      ..
T Consensus       375 ~~  376 (411)
T 4a1s_A          375 XX  376 (411)
T ss_dssp             HH
T ss_pred             hc
Confidence            43

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.79  E-value=3.8e-17  Score=152.56  Aligned_cols=176  Identities=13%  Similarity=0.042  Sum_probs=160.2

Q ss_pred             hhhhhHH-HHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH
Q 009850           31 TRSDSFH-AIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQ-NRAEEAIEAIKSLRS  108 (524)
Q Consensus        31 ~~~~~~~-~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~-g~~~eAi~~~~~al~  108 (524)
                      .+...+. ++...|.....|+.+|.++...|++++|+.+|++++..+|++..++..+|.++... |++++|+..+++++.
T Consensus        26 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~  105 (225)
T 2vq2_A           26 QATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALA  105 (225)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc
Confidence            3344443 44567888899999999999999999999999999999999999999999999999 999999999999999


Q ss_pred             --hCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHH
Q 009850          109 --RCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWAL  186 (524)
Q Consensus       109 --~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~  186 (524)
                        ..|...  .++..+|.++...|++++|+..|+++++.                          +|.+..++..+|.++
T Consensus       106 ~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------------------------~~~~~~~~~~la~~~  157 (225)
T 2vq2_A          106 DPTYPTPY--IANLNKGICSAKQGQFGLAEAYLKRSLAA--------------------------QPQFPPAFKELARTK  157 (225)
T ss_dssp             STTCSCHH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------------STTCHHHHHHHHHHH
T ss_pred             CcCCcchH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------------------CCCCchHHHHHHHHH
Confidence              455554  67789999999999999999999999998                          899999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhCC-CcHH-HHHHHHHHHHcCCHHHHHHHHHH
Q 009850          187 MQQNNYIEAEDAYRRALSIAP-DNNK-MCNLGICLMKQGRIGEAKETLRR  234 (524)
Q Consensus       187 ~~~g~~~eAi~~~~~Al~l~P-~~~~-~~~Lg~~~~~~G~~~eA~~~~~~  234 (524)
                      ...|++++|+.+|++++...| .+.. +..++.++...|++++|..+++.
T Consensus       158 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  207 (225)
T 2vq2_A          158 MLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQ  207 (225)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            999999999999999999999 8888 88889999999999999999883

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.79  E-value=5.8e-18  Score=152.85  Aligned_cols=173  Identities=16%  Similarity=0.111  Sum_probs=162.5

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHH
Q 009850           79 VDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTK  158 (524)
Q Consensus        79 ~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~  158 (524)
                      ...++..+|.++...|++++|+..+++++...|.+.  .++..+|.++...|++++|+..+++++..             
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-------------   71 (186)
T 3as5_A            7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDV--DVALHLGIAYVKTGAVDRGTELLERSLAD-------------   71 (186)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------
T ss_pred             hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccCh--HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------------
Confidence            456788999999999999999999999999999886  67889999999999999999999999998             


Q ss_pred             HHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcc
Q 009850          159 TARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKP  237 (524)
Q Consensus       159 ~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~  237 (524)
                                   +|.+..++..+|.++...|++++|+.+|++++...|++.. +..+|.++...|++++|+.+++    
T Consensus        72 -------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~----  134 (186)
T 3as5_A           72 -------------APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFK----  134 (186)
T ss_dssp             -------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH----
T ss_pred             -------------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHH----
Confidence                         8999999999999999999999999999999999999998 9999999999999999999999    


Q ss_pred             cccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCc
Q 009850          238 AVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHI  300 (524)
Q Consensus       238 ~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~  300 (524)
                                       +++...|+...++..+|.++...|++++|+..++++++..|.+...
T Consensus       135 -----------------~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  180 (186)
T 3as5_A          135 -----------------IALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVE  180 (186)
T ss_dssp             -----------------HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCGG
T ss_pred             -----------------HHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchhh
Confidence                             6777889999999999999999999999999999999998877653

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.79  E-value=2.1e-18  Score=170.45  Aligned_cols=227  Identities=16%  Similarity=0.139  Sum_probs=146.1

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---Cc-HHHHH
Q 009850           47 TPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRV----DSALKDMAIVMKQQNRAEEAIEAIKSLRSRCS---DQ-AQESL  118 (524)
Q Consensus        47 ~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~----~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p---~~-~~~~l  118 (524)
                      ..++..|..++..|++++|+.+|++++...|++    ..++..+|.++...|++++|+.++++++...+   +. ....+
T Consensus         6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~   85 (338)
T 3ro2_A            6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA   85 (338)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence            357889999999999999999999999999998    46788999999999999999999999988743   11 22467


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHhhccH--------------hhhc-cc--------------------HHHHHHH
Q 009850          119 DNILLDLYKRCGRLDDQIALLKHKLYLIQQGL--------------AFNG-KR--------------------TKTARSQ  163 (524)
Q Consensus       119 ~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~--------------~~~~-~~--------------------~~~a~~~  163 (524)
                      +..+|.+|...|++++|+..+++++.+.+...              .+.. +.                    .+.+...
T Consensus        86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~  165 (338)
T 3ro2_A           86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL  165 (338)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence            88999999999999999999999998742210              0000 11                    1112111


Q ss_pred             -hHHHHHhc----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc------HH-HHHHHHHHHHcCCHHHHHHH
Q 009850          164 -GKKFQVSV----EQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDN------NK-MCNLGICLMKQGRIGEAKET  231 (524)
Q Consensus       164 -~~~~~~~~----~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~------~~-~~~Lg~~~~~~G~~~eA~~~  231 (524)
                       .+......    .+....++.++|.++...|++++|+.+|++++.+.+..      .. +.++|.++...|++++|+.+
T Consensus       166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  245 (338)
T 3ro2_A          166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY  245 (338)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence             11111100    12224456666666666666666666666666553321      11 55566666666666666666


Q ss_pred             HHHhcccccCCCcCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHhhcccCC
Q 009850          232 LRRVKPAVADGPRGVDSHLKAYERAQQMLKDL------ESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQ  294 (524)
Q Consensus       232 ~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~  294 (524)
                      ++++                     +...+..      ..++..+|.++...|++++|+..+++++...
T Consensus       246 ~~~a---------------------l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  293 (338)
T 3ro2_A          246 YKKT---------------------LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA  293 (338)
T ss_dssp             HHHH---------------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHH---------------------HHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            6654                     3333222      3445555555555555555555555555443

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.79  E-value=4.1e-18  Score=159.92  Aligned_cols=169  Identities=12%  Similarity=0.076  Sum_probs=147.0

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH----------------HHHHHHHcCChHHHHHHHHHH
Q 009850           79 VDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNI----------------LLDLYKRCGRLDDQIALLKHK  142 (524)
Q Consensus        79 ~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~----------------lg~~~~~~g~~~eA~~~~~~a  142 (524)
                      ..+.++..|..+...|++++|+..|++++..+|+++  .+++.                +|.+|...|++++|+..|+++
T Consensus         3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a   80 (208)
T 3urz_A            3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRT--EMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKEL   80 (208)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHH--HHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh--HHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            467789999999999999999999999999999887  56666                999999999999999999999


Q ss_pred             HHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHH
Q 009850          143 LYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMK  221 (524)
Q Consensus       143 l~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~  221 (524)
                      +++                          +|+++.+++++|.++...|++++|+.+|+++++++|+++. |+++|.+|..
T Consensus        81 l~~--------------------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~  134 (208)
T 3urz_A           81 LQK--------------------------APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYL  134 (208)
T ss_dssp             HHH--------------------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHH--------------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            999                          9999999999999999999999999999999999999999 9999999987


Q ss_pred             cCCH--HHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCC
Q 009850          222 QGRI--GEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCK  297 (524)
Q Consensus       222 ~G~~--~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~  297 (524)
                      .|+.  ..+...|.+                     ++...| ...+++++|.++...|++++|+.+|+++++.+|..
T Consensus       135 ~~~~~~~~~~~~~~~---------------------~~~~~~-~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  190 (208)
T 3urz_A          135 TAEQEKKKLETDYKK---------------------LSSPTK-MQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST  190 (208)
T ss_dssp             HHHHHHHHHHHHHC------------------------CCCH-HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred             HhHHHHHHHHHHHHH---------------------HhCCCc-hhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence            7654  344555553                     322111 22367889999999999999999999999999974

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.78  E-value=4.9e-18  Score=173.92  Aligned_cols=225  Identities=11%  Similarity=0.032  Sum_probs=182.5

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcC------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-----HHH
Q 009850           48 PYVRAKNVQLVDKDPEKAIPLFWAAINAG------DRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQ-----AQE  116 (524)
Q Consensus        48 ~~~~lg~~~~~~g~~~~Ai~~~~~al~~~------p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~-----~~~  116 (524)
                      .|+.+|..++..|++++|+.+|++++...      +..+.+++.+|.+|..+|++++|+.++++++.+.+..     ...
T Consensus       103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  182 (378)
T 3q15_A          103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI  182 (378)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence            47789999999999999999999999863      2356789999999999999999999999999886531     225


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 009850          117 SLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAE  196 (524)
Q Consensus       117 ~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi  196 (524)
                      .++..+|.+|...|++++|+.+|++++.+....                    ...+....++.++|.+|...|++++|+
T Consensus       183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~--------------------~~~~~~~~~~~~lg~~y~~~~~~~~A~  242 (378)
T 3q15_A          183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDI--------------------QNDRFIAISLLNIANSYDRSGDDQMAV  242 (378)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc--------------------CCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence            678899999999999999999999999872110                    001123568999999999999999999


Q ss_pred             HHHHHHHh-----hCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCC------------------cC---HHHH
Q 009850          197 DAYRRALS-----IAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGP------------------RG---VDSH  249 (524)
Q Consensus       197 ~~~~~Al~-----l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~------------------~~---~~~A  249 (524)
                      .+|++++.     .+|.... ++++|.++..+|++++|+.++++++.......                  +.   ..++
T Consensus       243 ~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~a  322 (378)
T 3q15_A          243 EHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDL  322 (378)
T ss_dssp             HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred             HHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            99999999     6777756 89999999999999999999999866543321                  23   4455


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccC
Q 009850          250 LKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQP  293 (524)
Q Consensus       250 ~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~  293 (524)
                      +..+++ ....+.....+..+|.+|...|++++|+..|++++..
T Consensus       323 l~~~~~-~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~  365 (378)
T 3q15_A          323 LSYFEK-KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA  365 (378)
T ss_dssp             HHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHh-CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            555554 2233445567889999999999999999999988754

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.78  E-value=1.6e-18  Score=177.13  Aligned_cols=249  Identities=16%  Similarity=0.132  Sum_probs=189.8

Q ss_pred             hhhhhhhHH-HHhcCCCC----hHHHHHHHHHHHHcCChHHHHHHHHHHHHc------CCCcHHHHHHHHHHHHHcCCHH
Q 009850           29 SRTRSDSFH-AIHKVPVG----DTPYVRAKNVQLVDKDPEKAIPLFWAAINA------GDRVDSALKDMAIVMKQQNRAE   97 (524)
Q Consensus        29 l~~~~~~~~-~~~~~p~~----~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~------~p~~~~a~~~La~~~~~~g~~~   97 (524)
                      ...+...+. ++...|..    ...|+.+|.+++..|++++|+.+|++++..      .|....++..+|.++...|+++
T Consensus        25 ~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  104 (406)
T 3sf4_A           25 CRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFD  104 (406)
T ss_dssp             HHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHH
Confidence            334444443 33445555    357899999999999999999999999887      3556778999999999999999


Q ss_pred             HHHHHHHHHHHhCCCc----HHHHHHHHHHHHHHHcCC--------------------hHHHHHHHHHHHHHhhccHhhh
Q 009850           98 EAIEAIKSLRSRCSDQ----AQESLDNILLDLYKRCGR--------------------LDDQIALLKHKLYLIQQGLAFN  153 (524)
Q Consensus        98 eAi~~~~~al~~~p~~----~~~~l~~~lg~~~~~~g~--------------------~~eA~~~~~~al~l~~~~~~~~  153 (524)
                      +|+.++++++.+.+..    ....++..+|.+|...|+                    +++|+..|++++.+...     
T Consensus       105 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~-----  179 (406)
T 3sf4_A          105 EAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTA-----  179 (406)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred             HHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHh-----
Confidence            9999999999987632    124578899999999999                    89999988888876211     


Q ss_pred             cccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc------HH-HHHHHHHHHHcCCHH
Q 009850          154 GKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDN------NK-MCNLGICLMKQGRIG  226 (524)
Q Consensus       154 ~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~------~~-~~~Lg~~~~~~G~~~  226 (524)
                                     ....+....++.++|.++...|++++|+.+|++++.+.+..      .. +.++|.++..+|+++
T Consensus       180 ---------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  244 (406)
T 3sf4_A          180 ---------------LGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE  244 (406)
T ss_dssp             ---------------TTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             ---------------ccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence                           00012335678888888888888888888888888765432      11 677888888888888


Q ss_pred             HHHHHHHHhcccccCCC-------------------cCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHH
Q 009850          227 EAKETLRRVKPAVADGP-------------------RGVDSHLKAYERAQQMLKDL------ESEMMNKGGDRVEQSRLF  281 (524)
Q Consensus       227 eA~~~~~~a~~~~~~~~-------------------~~~~~A~~~~~~al~~~p~~------~~a~~~lg~~~~~~g~~~  281 (524)
                      +|+.+|++++...+...                   +++++|+..|++++...+..      ..++..+|.+|...|+++
T Consensus       245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  324 (406)
T 3sf4_A          245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD  324 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence            88888888754433221                   66777888888888775544      668889999999999999


Q ss_pred             HHHHHHhhcccCCCCC
Q 009850          282 DAFLGSSSIWQPQPCK  297 (524)
Q Consensus       282 eAi~~~~~al~~~P~~  297 (524)
                      +|+..|+++++..+..
T Consensus       325 ~A~~~~~~al~~~~~~  340 (406)
T 3sf4_A          325 QAMHFAEKHLEISREV  340 (406)
T ss_dssp             HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999998775544

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.78  E-value=2.6e-18  Score=169.84  Aligned_cols=253  Identities=15%  Similarity=0.099  Sum_probs=186.7

Q ss_pred             hhhhhhHHH-HhcCCCC----hHHHHHHHHHHHHcCChHHHHHHHHHHHHc------CCCcHHHHHHHHHHHHHcCCHHH
Q 009850           30 RTRSDSFHA-IHKVPVG----DTPYVRAKNVQLVDKDPEKAIPLFWAAINA------GDRVDSALKDMAIVMKQQNRAEE   98 (524)
Q Consensus        30 ~~~~~~~~~-~~~~p~~----~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~------~p~~~~a~~~La~~~~~~g~~~e   98 (524)
                      ..+...+.. +...|..    ...+..+|.++...|++++|+.++++++..      .+....++..+|.++...|++++
T Consensus        22 ~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  101 (338)
T 3ro2_A           22 RAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDE  101 (338)
T ss_dssp             HHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHH
Confidence            334444433 3344555    367889999999999999999999999987      45567889999999999999999


Q ss_pred             HHHHHHHHHHhCCCc----HHHHHHHHHHHHHHHcCC--------------------hHHHHHHHHHHHHHhh-------
Q 009850           99 AIEAIKSLRSRCSDQ----AQESLDNILLDLYKRCGR--------------------LDDQIALLKHKLYLIQ-------  147 (524)
Q Consensus        99 Ai~~~~~al~~~p~~----~~~~l~~~lg~~~~~~g~--------------------~~eA~~~~~~al~l~~-------  147 (524)
                      |+.++++++.+.+..    ....++..+|.+|...|+                    +++|+..+++++.+..       
T Consensus       102 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~  181 (338)
T 3ro2_A          102 AIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAA  181 (338)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence            999999999886532    224577899999999999                    9999999999887631       


Q ss_pred             -------ccHhh-hcccHHHHHH-HhHHHHHhcC-CC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc-----
Q 009850          148 -------QGLAF-NGKRTKTARS-QGKKFQVSVE-QE---ATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDN-----  209 (524)
Q Consensus       148 -------~~~~~-~~~~~~~a~~-~~~~~~~~~~-p~---~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~-----  209 (524)
                             .+..+ ..+..+.+.. +.+.+..... ++   ...++.++|.++...|++++|+.+|++++.+.+..     
T Consensus       182 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  261 (338)
T 3ro2_A          182 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV  261 (338)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhH
Confidence                   11111 1133333333 3333332221 22   24589999999999999999999999999886554     


Q ss_pred             -HH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 009850          210 -NK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGS  287 (524)
Q Consensus       210 -~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~  287 (524)
                       .. +..+|.++..+|++++|+.++++++...+               .....+....++..+|.++...|++++|+..|
T Consensus       262 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~---------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  326 (338)
T 3ro2_A          262 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ---------------ELKDRIGEGRACWSLGNAYTALGNHDQAMHFA  326 (338)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---------------HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH---------------hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence             33 78999999999999999999996533221               11111223568899999999999999999999


Q ss_pred             hhcccCCCCC
Q 009850          288 SSIWQPQPCK  297 (524)
Q Consensus       288 ~~al~~~P~~  297 (524)
                      +++++..+..
T Consensus       327 ~~a~~~~~~~  336 (338)
T 3ro2_A          327 EKHLEISREV  336 (338)
T ss_dssp             HHHHHC----
T ss_pred             HHHHHHHHhh
Confidence            9999887654

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.78  E-value=6.4e-19  Score=156.76  Aligned_cols=146  Identities=12%  Similarity=0.133  Sum_probs=132.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHh
Q 009850           85 DMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQG  164 (524)
Q Consensus        85 ~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~  164 (524)
                      .||.++...|++++|+..+++++..+|+++  ..++.+|.+|...|++++|+.+|++++++                   
T Consensus         2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~--~~~~~la~~y~~~~~~~~A~~~~~~al~~-------------------   60 (150)
T 4ga2_A            2 PLGSMRRSKADVERYIASVQGSTPSPRQKS--IKGFYFAKLYYEAKEYDLAKKYICTYINV-------------------   60 (150)
T ss_dssp             -----CCCHHHHHHHHHHHHHHSCSHHHHH--TTHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------
T ss_pred             HhHHHHHHcChHHHHHHHHHHhcccCcccH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------------------
Confidence            478899999999999999999999988776  56788999999999999999999999999                   


Q ss_pred             HHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHH-HHhcccccCC
Q 009850          165 KKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETL-RRVKPAVADG  242 (524)
Q Consensus       165 ~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~-~~a~~~~~~~  242 (524)
                             +|+++.+|+++|.+|...|++++|+.+|+++++++|+++. |+++|.++.++|++++|...| +         
T Consensus        61 -------~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~---------  124 (150)
T 4ga2_A           61 -------QERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVE---------  124 (150)
T ss_dssp             -------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHH---------
T ss_pred             -------CCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH---------
Confidence                   9999999999999999999999999999999999999999 999999999999998877664 6         


Q ss_pred             CcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 009850          243 PRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSR  279 (524)
Q Consensus       243 ~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~  279 (524)
                                  ++++++|+++.++..++.++..+|+
T Consensus       125 ------------~al~l~P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A          125 ------------RAAKLFPGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             ------------HHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred             ------------HHHHhCcCCHHHHHHHHHHHHHhCc
Confidence                        8999999999999999999988875

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.77  E-value=1.2e-18  Score=168.46  Aligned_cols=219  Identities=22%  Similarity=0.234  Sum_probs=168.9

Q ss_pred             HHcCChHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCc-HHHHHHHHH
Q 009850           57 LVDKDPEKAIPLFWAAINA--------GDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRC-----SDQ-AQESLDNIL  122 (524)
Q Consensus        57 ~~~g~~~~Ai~~~~~al~~--------~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~-----p~~-~~~~l~~~l  122 (524)
                      ...|++++|+.+|++++..        .|....++..+|.++...|++++|+.+|++++...     +++ ....++..+
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l   91 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL   91 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            4578888899999888874        36678899999999999999999999999999884     322 224788899


Q ss_pred             HHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009850          123 LDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRA  202 (524)
Q Consensus       123 g~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~A  202 (524)
                      |.+|...|++++|+.+|++++.+.....                  ...+|....++.++|.++...|++++|+.+|+++
T Consensus        92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~------------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  153 (283)
T 3edt_B           92 AVLYGKRGKYKEAEPLCKRALEIREKVL------------------GKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRA  153 (283)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHHHHH------------------CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHc------------------CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            9999999999999999999998721100                  0002556789999999999999999999999999


Q ss_pred             Hhh--------CCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccC---------CC-------------------cC
Q 009850          203 LSI--------APDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVAD---------GP-------------------RG  245 (524)
Q Consensus       203 l~l--------~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~---------~~-------------------~~  245 (524)
                      +.+        .|.... +.++|.++..+|++++|+.+|++++...+.         ..                   ..
T Consensus       154 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (283)
T 3edt_B          154 LEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAP  233 (283)
T ss_dssp             HHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC---
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHH
Confidence            998        555555 899999999999999999999998654211         00                   11


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccC
Q 009850          246 VDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQP  293 (524)
Q Consensus       246 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~  293 (524)
                      +..+...+.......|....++..+|.+|..+|++++|+..|+++++.
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  281 (283)
T 3edt_B          234 YGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN  281 (283)
T ss_dssp             ---------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            122222222222344666778999999999999999999999998865

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.77  E-value=2.5e-17  Score=156.30  Aligned_cols=189  Identities=7%  Similarity=-0.040  Sum_probs=151.7

Q ss_pred             ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-HHHHH
Q 009850           45 GDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRV---DSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQ-ESLDN  120 (524)
Q Consensus        45 ~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~---~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~-~~l~~  120 (524)
                      .+..++.+|..++..|++++|+..|++++...|++   ..+++.+|.++..+|++++|+..|+++++.+|++.. ..+++
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~   82 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY   82 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence            45679999999999999999999999999998876   478999999999999999999999999999998753 23667


Q ss_pred             HHHHHHHH------------------cCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHH
Q 009850          121 ILLDLYKR------------------CGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNL  182 (524)
Q Consensus       121 ~lg~~~~~------------------~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~L  182 (524)
                      .+|.++..                  .|++++|+..|+++++..+.+.............         ..........+
T Consensus        83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~---------~~~~~~~~~~~  153 (225)
T 2yhc_A           83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFL---------KDRLAKYEYSV  153 (225)
T ss_dssp             HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHH---------HHHHHHHHHHH
T ss_pred             HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHH---------HHHHHHHHHHH
Confidence            77887765                  5789999999999998854433211100000000         01112344788


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCcH---H-HHHHHHHHHHcCCHHHHHHHHHHhcccccCC
Q 009850          183 GWALMQQNNYIEAEDAYRRALSIAPDNN---K-MCNLGICLMKQGRIGEAKETLRRVKPAVADG  242 (524)
Q Consensus       183 g~~~~~~g~~~eAi~~~~~Al~l~P~~~---~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~  242 (524)
                      |.+|...|++++|+..|+++++..|+++   . ++.+|.++.++|++++|+..++++....|..
T Consensus       154 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~  217 (225)
T 2yhc_A          154 AEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT  217 (225)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred             HHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence            9999999999999999999999999986   3 8999999999999999999999775555443

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.76  E-value=8.3e-18  Score=166.49  Aligned_cols=193  Identities=13%  Similarity=0.042  Sum_probs=126.2

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHH
Q 009850           79 VDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTK  158 (524)
Q Consensus        79 ~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~  158 (524)
                      +...++.+|.++...|++++|+..|++++..+|++.  .++..+|.++...|++++|+..|+++++.             
T Consensus        20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-------------   84 (327)
T 3cv0_A           20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPERE--EAWRSLGLTQAENEKDGLAIIALNHARML-------------   84 (327)
T ss_dssp             GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------
T ss_pred             hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------------
Confidence            345688999999999999999999999999999987  67788999999999999999999999998             


Q ss_pred             HHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHH--------------HH-HHHHc
Q 009850          159 TARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNL--------------GI-CLMKQ  222 (524)
Q Consensus       159 ~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~L--------------g~-~~~~~  222 (524)
                                   +|++..++..+|.++...|++++|+..|++++...|.+.. +..+              +. ++...
T Consensus        85 -------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (327)
T 3cv0_A           85 -------------DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAP  151 (327)
T ss_dssp             -------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSH
T ss_pred             -------------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHc
Confidence                         5555555666666666666666666555555555555544 3333              33 34455


Q ss_pred             CCHHHHHHHHHHhcccccCCC-------------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhh
Q 009850          223 GRIGEAKETLRRVKPAVADGP-------------RGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSS  289 (524)
Q Consensus       223 G~~~eA~~~~~~a~~~~~~~~-------------~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~  289 (524)
                      |++++|+..++++....+...             +++++|+..+++++...|+...++..+|.++...|++++|+..|++
T Consensus       152 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  231 (327)
T 3cv0_A          152 NEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNR  231 (327)
T ss_dssp             HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            555555555555544444332             4445555555555555555555555555555555555555555555


Q ss_pred             cccCCCCCCC
Q 009850          290 IWQPQPCKDH  299 (524)
Q Consensus       290 al~~~P~~~~  299 (524)
                      +++..|.+..
T Consensus       232 a~~~~~~~~~  241 (327)
T 3cv0_A          232 ALDINPGYVR  241 (327)
T ss_dssp             HHHHCTTCHH
T ss_pred             HHHcCCCCHH
Confidence            5555554433

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.76  E-value=4.5e-17  Score=162.22  Aligned_cols=183  Identities=7%  Similarity=-0.040  Sum_probs=166.7

Q ss_pred             HHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHH
Q 009850           63 EKAIPLFWAAINAGDRVDSALKDMAIVMKQ-------QNRA-------EEAIEAIKSLRS-RCSDQAQESLDNILLDLYK  127 (524)
Q Consensus        63 ~~Ai~~~~~al~~~p~~~~a~~~La~~~~~-------~g~~-------~eAi~~~~~al~-~~p~~~~~~l~~~lg~~~~  127 (524)
                      ++|+..|++++..+|+++.+|+.+|..+..       .|++       ++|+..|++++. ++|++.  .+|..+|.++.
T Consensus        33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~--~~~~~~~~~~~  110 (308)
T 2ond_A           33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNM--LLYFAYADYEE  110 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCH--HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccH--HHHHHHHHHHH
Confidence            789999999999999999999999999874       5886       999999999999 799887  78899999999


Q ss_pred             HcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 009850          128 RCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATR-LLGNLGWALMQQNNYIEAEDAYRRALSIA  206 (524)
Q Consensus       128 ~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~-a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~  206 (524)
                      ..|++++|...|++++++                          +|.++. +|.++|.++.+.|++++|+..|+++++..
T Consensus       111 ~~~~~~~A~~~~~~al~~--------------------------~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~  164 (308)
T 2ond_A          111 SRMKYEKVHSIYNRLLAI--------------------------EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA  164 (308)
T ss_dssp             HTTCHHHHHHHHHHHHTS--------------------------SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST
T ss_pred             hcCCHHHHHHHHHHHHhc--------------------------cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence            999999999999999988                          888876 99999999999999999999999999999


Q ss_pred             CCcHH-HHHHHHHHHH-cCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 009850          207 PDNNK-MCNLGICLMK-QGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAF  284 (524)
Q Consensus       207 P~~~~-~~~Lg~~~~~-~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi  284 (524)
                      |.+.. |...+..... .|++++|+..|+                     +++...|+.+.+|.++|..+..+|++++|+
T Consensus       165 p~~~~~~~~~a~~~~~~~~~~~~A~~~~~---------------------~al~~~p~~~~~~~~~~~~~~~~g~~~~A~  223 (308)
T 2ond_A          165 RTRHHVYVTAALMEYYCSKDKSVAFKIFE---------------------LGLKKYGDIPEYVLAYIDYLSHLNEDNNTR  223 (308)
T ss_dssp             TCCTHHHHHHHHHHHHTSCCHHHHHHHHH---------------------HHHHHHTTCHHHHHHHHHHHHTTCCHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcCCHHHHHHHHH---------------------HHHHhCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence            98877 7666655443 799999998888                     788889999999999999999999999999


Q ss_pred             HHHhhcccCC
Q 009850          285 LGSSSIWQPQ  294 (524)
Q Consensus       285 ~~~~~al~~~  294 (524)
                      ..|++++...
T Consensus       224 ~~~~~al~~~  233 (308)
T 2ond_A          224 VLFERVLTSG  233 (308)
T ss_dssp             HHHHHHHHSS
T ss_pred             HHHHHHHhcc
Confidence            9999999863

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.75  E-value=5.3e-18  Score=154.53  Aligned_cols=162  Identities=13%  Similarity=0.076  Sum_probs=143.2

Q ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 009850           46 DTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDL  125 (524)
Q Consensus        46 ~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~  125 (524)
                      .+.++.+|..+...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|++++...| ++  .....++.+
T Consensus         6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~--~~~~~~~~~   82 (176)
T 2r5s_A            6 DEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DN--SYKSLIAKL   82 (176)
T ss_dssp             CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CH--HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-Ch--HHHHHHHHH
Confidence            345889999999999999999999999999999999999999999999999999999999999999 75  333444433


Q ss_pred             H-HHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009850          126 Y-KRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALS  204 (524)
Q Consensus       126 ~-~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~  204 (524)
                      . ...+...+|+..|+++++.                          +|+++.+++++|.++...|++++|+..|+++++
T Consensus        83 ~~~~~~~~~~a~~~~~~al~~--------------------------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~  136 (176)
T 2r5s_A           83 ELHQQAAESPELKRLEQELAA--------------------------NPDNFELACELAVQYNQVGRDEEALELLWNILK  136 (176)
T ss_dssp             HHHHHHTSCHHHHHHHHHHHH--------------------------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHhhcccchHHHHHHHHHHh--------------------------CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            2 2334445689999999998                          999999999999999999999999999999999


Q ss_pred             hCCCc--HH-HHHHHHHHHHcCCHHHHHHHHHHhc
Q 009850          205 IAPDN--NK-MCNLGICLMKQGRIGEAKETLRRVK  236 (524)
Q Consensus       205 l~P~~--~~-~~~Lg~~~~~~G~~~eA~~~~~~a~  236 (524)
                      .+|+.  .. +.++|.++..+|+.++|+..|++++
T Consensus       137 ~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al  171 (176)
T 2r5s_A          137 VNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL  171 (176)
T ss_dssp             TCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred             hCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence            99975  44 8999999999999999999999753

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.75  E-value=2.5e-17  Score=162.74  Aligned_cols=168  Identities=15%  Similarity=0.068  Sum_probs=155.8

Q ss_pred             cCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 009850           41 KVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDN  120 (524)
Q Consensus        41 ~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~  120 (524)
                      .+|...+.++.+|..+...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..+++++..+|+..  ....
T Consensus       112 ~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~--~~~~  189 (287)
T 3qou_A          112 VLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTR--YQGL  189 (287)
T ss_dssp             HSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHH--HHHH
T ss_pred             HcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchH--HHHH
Confidence            35888899999999999999999999999999999999999999999999999999999999999999999664  3445


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 009850          121 ILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYR  200 (524)
Q Consensus       121 ~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~  200 (524)
                      ..+..+...++.++|+..|++++..                          +|+++.+++++|.++...|++++|+..|+
T Consensus       190 ~~~~~l~~~~~~~~a~~~l~~al~~--------------------------~P~~~~~~~~la~~l~~~g~~~~A~~~l~  243 (287)
T 3qou_A          190 VAQIELLXQAADTPEIQQLQQQVAE--------------------------NPEDAALATQLALQLHQVGRNEEALELLF  243 (287)
T ss_dssp             HHHHHHHHHHTSCHHHHHHHHHHHH--------------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHhhcccCccHHHHHHHHhc--------------------------CCccHHHHHHHHHHHHHcccHHHHHHHHH
Confidence            5566677889999999999999999                          99999999999999999999999999999


Q ss_pred             HHHhhCCCc--HH-HHHHHHHHHHcCCHHHHHHHHHHhc
Q 009850          201 RALSIAPDN--NK-MCNLGICLMKQGRIGEAKETLRRVK  236 (524)
Q Consensus       201 ~Al~l~P~~--~~-~~~Lg~~~~~~G~~~eA~~~~~~a~  236 (524)
                      ++++.+|++  .. +.++|.++..+|+.++|+..|++++
T Consensus       244 ~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al  282 (287)
T 3qou_A          244 GHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQL  282 (287)
T ss_dssp             HHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence            999999998  66 9999999999999999999999753

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.74  E-value=1.4e-17  Score=184.36  Aligned_cols=175  Identities=11%  Similarity=0.016  Sum_probs=164.1

Q ss_pred             HcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------HhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 009850           74 NAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLR--------SRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYL  145 (524)
Q Consensus        74 ~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al--------~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l  145 (524)
                      ..+|+++.+++..|   ...|++++|+..|++++        ..+|++.  .++..+|.+|...|++++|+..|++++++
T Consensus       388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~--~~~~~~a~~~~~~g~~~~A~~~~~~al~~  462 (681)
T 2pzi_A          388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESV--ELPLMEVRALLDLGDVAKATRKLDDLAER  462 (681)
T ss_dssp             CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCS--HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccch--hHHHHHHHHHHhcCCHHHHHHHHHHHhcc
Confidence            35788888888777   78899999999999999        8899887  67889999999999999999999999999


Q ss_pred             hhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCC
Q 009850          146 IQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGR  224 (524)
Q Consensus       146 ~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~  224 (524)
                                                +|++..+|+++|.++...|++++|+..|+++++++|++.. |+++|.++..+|+
T Consensus       463 --------------------------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~  516 (681)
T 2pzi_A          463 --------------------------VGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGN  516 (681)
T ss_dssp             --------------------------HCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTC
T ss_pred             --------------------------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC
Confidence                                      8999999999999999999999999999999999999999 9999999999999


Q ss_pred             HHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCcc
Q 009850          225 IGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL  301 (524)
Q Consensus       225 ~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~l  301 (524)
                      +++ +..|+                     ++++.+|++..+++++|.++..+|++++|+..|+++++.+|.+....
T Consensus       517 ~~~-~~~~~---------------------~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~  571 (681)
T 2pzi_A          517 TDE-HKFYQ---------------------TVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTAR  571 (681)
T ss_dssp             CCT-TCHHH---------------------HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHH
T ss_pred             hHH-HHHHH---------------------HHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHH
Confidence            999 99998                     88999999999999999999999999999999999999999887654

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.74  E-value=1.6e-16  Score=150.79  Aligned_cols=175  Identities=11%  Similarity=0.010  Sum_probs=153.2

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccH
Q 009850           79 VDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQ-ESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRT  157 (524)
Q Consensus        79 ~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~-~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~  157 (524)
                      .+..++.+|..+...|++++|+..|++++...|+++. ..+++.+|.+|...|++++|+..|+++++.            
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~------------   70 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL------------   70 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH------------
Confidence            4678999999999999999999999999999997642 367788999999999999999999999998            


Q ss_pred             HHHHHHhHHHHHhcCCCcH---HHHHHHHHHHHH------------------cCCHHHHHHHHHHHHhhCCCcHH-H---
Q 009850          158 KTARSQGKKFQVSVEQEAT---RLLGNLGWALMQ------------------QNNYIEAEDAYRRALSIAPDNNK-M---  212 (524)
Q Consensus       158 ~~a~~~~~~~~~~~~p~~~---~a~~~Lg~~~~~------------------~g~~~eAi~~~~~Al~l~P~~~~-~---  212 (524)
                                    +|++.   .+++.+|.++..                  .|++++|+..|+++++..|++.. +   
T Consensus        71 --------------~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~  136 (225)
T 2yhc_A           71 --------------NPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDAT  136 (225)
T ss_dssp             --------------CTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHH
T ss_pred             --------------CcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHH
Confidence                          66664   478889988876                  57999999999999999999854 2   


Q ss_pred             --------------HHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHH
Q 009850          213 --------------CNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLE---SEMMNKGGDRV  275 (524)
Q Consensus       213 --------------~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~---~a~~~lg~~~~  275 (524)
                                    ..+|.+|...|++.+|+..|+                     ++++..|+.+   .+++.+|.++.
T Consensus       137 ~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~---------------------~~l~~~p~~~~~~~a~~~l~~~~~  195 (225)
T 2yhc_A          137 KRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVE---------------------GMLRDYPDTQATRDALPLMENAYR  195 (225)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH---------------------HHHHHSTTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH---------------------HHHHHCcCCCccHHHHHHHHHHHH
Confidence                          567888889999999988888                     6777777765   67999999999


Q ss_pred             HcCCHHHHHHHHhhcccCCCCCCCc
Q 009850          276 EQSRLFDAFLGSSSIWQPQPCKDHI  300 (524)
Q Consensus       276 ~~g~~~eAi~~~~~al~~~P~~~~~  300 (524)
                      .+|++++|+..++.+....|.+...
T Consensus       196 ~~g~~~~A~~~~~~l~~~~~~~~~~  220 (225)
T 2yhc_A          196 QMQMNAQAEKVAKIIAANSSNTLEH  220 (225)
T ss_dssp             HTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred             HcCCcHHHHHHHHHHHhhCCCchhh
Confidence            9999999999999999988887653

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.74  E-value=4.2e-17  Score=140.56  Aligned_cols=120  Identities=13%  Similarity=0.112  Sum_probs=95.7

Q ss_pred             HHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHh
Q 009850           72 AINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLA  151 (524)
Q Consensus        72 al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~  151 (524)
                      +..++|+.++++..+|.++++.|+|++|+..|+++++++|.++  .++..+|.+|..+|++++|+..|++++++      
T Consensus         5 ~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~~~~~~~~~~~~~~A~~~~~~al~~------   76 (126)
T 4gco_A            5 LAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENA--ILYSNRAACLTKLMEFQRALDDCDTCIRL------   76 (126)
T ss_dssp             --CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred             HHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHhhHHHhhccHHHHHHHHHHHHHh------
Confidence            3446788888888888888888888888888888888888776  67777888888888888888888888877      


Q ss_pred             hhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHH
Q 009850          152 FNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICL  219 (524)
Q Consensus       152 ~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~  219 (524)
                                          +|+++.+|+++|.++..+|++++|+..|+++++++|++.. +.+++.|+
T Consensus        77 --------------------~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A           77 --------------------DSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL  125 (126)
T ss_dssp             --------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred             --------------------hhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence                                7888888888888888888888888888888888888877 77777663

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.73  E-value=1.2e-16  Score=158.06  Aligned_cols=183  Identities=14%  Similarity=0.076  Sum_probs=148.0

Q ss_pred             ChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--c--HHHHHHHHHHHHHHHcCChHHHH
Q 009850           61 DPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSD--Q--AQESLDNILLDLYKRCGRLDDQI  136 (524)
Q Consensus        61 ~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~--~--~~~~l~~~lg~~~~~~g~~~eA~  136 (524)
                      ++++|+.+|.++              |.+|...|++++|+.+|++++.+.+.  +  ....++..+|.+|...|++++|+
T Consensus        32 ~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~   97 (292)
T 1qqe_A           32 KFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV   97 (292)
T ss_dssp             HHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence            599999999887              66889999999999999999998642  2  12467889999999999999999


Q ss_pred             HHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCC-CcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCc-----
Q 009850          137 ALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQ-EATRLLGNLGWALMQQ-NNYIEAEDAYRRALSIAPDN-----  209 (524)
Q Consensus       137 ~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p-~~~~a~~~Lg~~~~~~-g~~~eAi~~~~~Al~l~P~~-----  209 (524)
                      .+|++++.+.+..-                     ++ ....++.++|.+|... |++++|+.+|++++.+.|..     
T Consensus        98 ~~~~~Al~l~~~~g---------------------~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~  156 (292)
T 1qqe_A           98 DSLENAIQIFTHRG---------------------QFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVAL  156 (292)
T ss_dssp             HHHHHHHHHHHHTT---------------------CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHcC---------------------CHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHH
Confidence            99999998832100                     11 1256899999999996 99999999999999998754     


Q ss_pred             -HH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHcCCH
Q 009850          210 -NK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLE-------SEMMNKGGDRVEQSRL  280 (524)
Q Consensus       210 -~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~-------~a~~~lg~~~~~~g~~  280 (524)
                       .. +.++|.++..+|++++|+.+|++                     ++...|+..       .+++++|.++..+|++
T Consensus       157 ~~~~~~~lg~~~~~~g~~~~A~~~~~~---------------------al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~  215 (292)
T 1qqe_A          157 SNKCFIKCADLKALDGQYIEASDIYSK---------------------LIKSSMGNRLSQWSLKDYFLKKGLCQLAATDA  215 (292)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHH---------------------HHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHH---------------------HHHHHhcCCcccHHHHHHHHHHHHHHHHcCCH
Confidence             33 78999999999999999999995                     445444432       3688999999999999


Q ss_pred             HHHHHHHhhcccCCCCCCC
Q 009850          281 FDAFLGSSSIWQPQPCKDH  299 (524)
Q Consensus       281 ~eAi~~~~~al~~~P~~~~  299 (524)
                      .+|+.+|++++.++|....
T Consensus       216 ~~A~~~~~~al~l~p~~~~  234 (292)
T 1qqe_A          216 VAAARTLQEGQSEDPNFAD  234 (292)
T ss_dssp             HHHHHHHHGGGCC------
T ss_pred             HHHHHHHHHHHhhCCCCCC
Confidence            9999999999999998765

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.72  E-value=8.4e-16  Score=152.71  Aligned_cols=216  Identities=6%  Similarity=-0.045  Sum_probs=164.0

Q ss_pred             HHHhcCCCChHHHHHHHHHHHHcC--ChHHHHHHHHHHHHcCCCcHHHHHHHHHHH----HHc---CCHHHHHHHHHHHH
Q 009850           37 HAIHKVPVGDTPYVRAKNVQLVDK--DPEKAIPLFWAAINAGDRVDSALKDMAIVM----KQQ---NRAEEAIEAIKSLR  107 (524)
Q Consensus        37 ~~~~~~p~~~~~~~~lg~~~~~~g--~~~~Ai~~~~~al~~~p~~~~a~~~La~~~----~~~---g~~~eAi~~~~~al  107 (524)
                      .++...|....+|+..|.++...|  ++++++..+..++..+|.+..+|+.++.++    ...   +++++++..+.+++
T Consensus        58 ~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l  137 (306)
T 3dra_A           58 LGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAML  137 (306)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHH
T ss_pred             HHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHH
Confidence            345556777777777777777777  777777777777777777777777777777    555   66777777777777


Q ss_pred             HhCCCcHHHHHHHHHHHHHHHcCChH--HHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHH
Q 009850          108 SRCSDQAQESLDNILLDLYKRCGRLD--DQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWA  185 (524)
Q Consensus       108 ~~~p~~~~~~l~~~lg~~~~~~g~~~--eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~  185 (524)
                      ..+|.+.  .+|+..+.++...|.++  +++.++.++++.                          +|.+..+|...+.+
T Consensus       138 ~~~pkny--~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--------------------------d~~N~sAW~~R~~l  189 (306)
T 3dra_A          138 SSDPKNH--HVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--------------------------DLKNNSAWSHRFFL  189 (306)
T ss_dssp             HHCTTCH--HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--------------------------CTTCHHHHHHHHHH
T ss_pred             HhCCCCH--HHHHHHHHHHHHhcccChHHHHHHHHHHHHh--------------------------CCCCHHHHHHHHHH
Confidence            7777775  56666666667777766  777777777776                          89999999999999


Q ss_pred             HHHcCC------HHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHH-HHHHHhcccccCCCcCHHHHHHHHHHHH
Q 009850          186 LMQQNN------YIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAK-ETLRRVKPAVADGPRGVDSHLKAYERAQ  257 (524)
Q Consensus       186 ~~~~g~------~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~-~~~~~a~~~~~~~~~~~~~A~~~~~~al  257 (524)
                      +...|+      ++++++++.+++..+|++.. |+.++.++...|+..+++ .++.++....                  
T Consensus       190 l~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~------------------  251 (306)
T 3dra_A          190 LFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLE------------------  251 (306)
T ss_dssp             HHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGG------------------
T ss_pred             HHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhcc------------------
Confidence            988887      89999999999999999988 989999998888855544 3444332210                  


Q ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhccc-CCCCCC
Q 009850          258 QMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQ-PQPCKD  298 (524)
Q Consensus       258 ~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~-~~P~~~  298 (524)
                      ...+....++..++.++.+.|+.++|+.+|+.+.. .+|...
T Consensus       252 ~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~  293 (306)
T 3dra_A          252 KDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRS  293 (306)
T ss_dssp             GTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGH
T ss_pred             CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHH
Confidence            12377888999999999999999999999999986 788643

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.72  E-value=1.6e-15  Score=147.39  Aligned_cols=199  Identities=11%  Similarity=0.075  Sum_probs=161.2

Q ss_pred             hhhhhhhHHHHhcCCCChHHHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH----cCCHHHHH
Q 009850           29 SRTRSDSFHAIHKVPVGDTPYVRAKNVQLV----DKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQ----QNRAEEAI  100 (524)
Q Consensus        29 l~~~~~~~~~~~~~p~~~~~~~~lg~~~~~----~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~----~g~~~eAi  100 (524)
                      ...+...+..... +..+.+++.+|.++..    .|++++|+.+|+++++.+  ++.+++.+|.+|..    .+++++|+
T Consensus        22 ~~~A~~~~~~a~~-~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~   98 (273)
T 1ouv_A           22 FTQAKKYFEKACD-LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKAL   98 (273)
T ss_dssp             HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred             HHHHHHHHHHHHH-CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHH
Confidence            3445555554444 6778899999999999    999999999999999985  78999999999999    99999999


Q ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcH
Q 009850          101 EAIKSLRSRCSDQAQESLDNILLDLYKR----CGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEAT  176 (524)
Q Consensus       101 ~~~~~al~~~p~~~~~~l~~~lg~~~~~----~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~  176 (524)
                      .+|++++...  ++  ..+..+|.+|..    .+++++|+.+|+++++.                            +++
T Consensus        99 ~~~~~a~~~~--~~--~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----------------------------~~~  146 (273)
T 1ouv_A           99 QYYSKACDLK--YA--EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL----------------------------NDG  146 (273)
T ss_dssp             HHHHHHHHTT--CH--HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT----------------------------TCH
T ss_pred             HHHHHHHHcC--Cc--cHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc----------------------------CcH
Confidence            9999999984  44  677889999999    99999999999999976                            356


Q ss_pred             HHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHH----cCCHHHHHHHHHHhcccccCC-----
Q 009850          177 RLLGNLGWALMQ----QNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMK----QGRIGEAKETLRRVKPAVADG-----  242 (524)
Q Consensus       177 ~a~~~Lg~~~~~----~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~----~G~~~eA~~~~~~a~~~~~~~-----  242 (524)
                      .+++++|.+|..    .+++++|+.+|+++++.+  ++. ++++|.+|..    .+++++|+.+|+++....+..     
T Consensus       147 ~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l  224 (273)
T 1ouv_A          147 DGCTILGSLYDAGRGTPKDLKKALASYDKACDLK--DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNL  224 (273)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHH
Confidence            788888888888    888888888888888763  445 8888888888    888888888888875443211     


Q ss_pred             ----------CcCHHHHHHHHHHHHHhCCCCH
Q 009850          243 ----------PRGVDSHLKAYERAQQMLKDLE  264 (524)
Q Consensus       243 ----------~~~~~~A~~~~~~al~~~p~~~  264 (524)
                                .++.++|+..|+++++..|..+
T Consensus       225 ~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a  256 (273)
T 1ouv_A          225 GAMQYNGEGVTRNEKQAIENFKKGCKLGAKGA  256 (273)
T ss_dssp             HHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHH
T ss_pred             HHHHHcCCCcccCHHHHHHHHHHHHHcCCHHH
Confidence                      2445566666667777766544

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.72  E-value=1.9e-16  Score=156.27  Aligned_cols=169  Identities=12%  Similarity=0.011  Sum_probs=158.8

Q ss_pred             cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhc
Q 009850           75 AGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNG  154 (524)
Q Consensus        75 ~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~  154 (524)
                      ..|++.+.++.+|..+...|++++|+..|++++..+|+++  .++..+|.++...|++++|+..|++++..         
T Consensus       112 ~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~--~a~~~la~~~~~~g~~~~A~~~l~~~~~~---------  180 (287)
T 3qou_A          112 VLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNG--EIGLLLAETLIALNRSEDAEAVLXTIPLQ---------  180 (287)
T ss_dssp             HSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCH--HHHHHHHHHHHHTTCHHHHHHHHTTSCGG---------
T ss_pred             HcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcch--hHHHHHHHHHHHCCCHHHHHHHHHhCchh---------
Confidence            3599999999999999999999999999999999999997  78899999999999999999999999887         


Q ss_pred             ccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHH
Q 009850          155 KRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLR  233 (524)
Q Consensus       155 ~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~  233 (524)
                                       +|+....+...+..+...++.++|+..|++++..+|++.. ++++|.++...|++++|+..|+
T Consensus       181 -----------------~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~  243 (287)
T 3qou_A          181 -----------------DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLF  243 (287)
T ss_dssp             -----------------GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             -----------------hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHH
Confidence                             7877778888888899999999999999999999999999 9999999999999999999999


Q ss_pred             HhcccccCCCcCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHhhccc
Q 009850          234 RVKPAVADGPRGVDSHLKAYERAQQMLKDL--ESEMMNKGGDRVEQSRLFDAFLGSSSIWQ  292 (524)
Q Consensus       234 ~a~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~a~~~lg~~~~~~g~~~eAi~~~~~al~  292 (524)
                                           +++..+|++  ..++.++|.++...|+.++|+..|++++.
T Consensus       244 ---------------------~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~  283 (287)
T 3qou_A          244 ---------------------GHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY  283 (287)
T ss_dssp             ---------------------HHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             ---------------------HHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence                                 788888988  88999999999999999999999998764

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.71  E-value=1.6e-16  Score=171.96  Aligned_cols=156  Identities=15%  Similarity=0.030  Sum_probs=129.2

Q ss_pred             cCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHH
Q 009850           59 DKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIAL  138 (524)
Q Consensus        59 ~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~  138 (524)
                      .|++++|+..|+++++.+|++..+++.+|.++...|++++|+..|+++++++|++.  .++..+|.+|...|++++|+.+
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~g~~~~A~~~   79 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHP--EAVARLGRVRWTQQRHAEAAVL   79 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCH--HHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHCCCHHHHHHH
Confidence            58899999999999999999999999999999999999999999999999999997  7889999999999999999999


Q ss_pred             HHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHH
Q 009850          139 LKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGI  217 (524)
Q Consensus       139 ~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~  217 (524)
                      |++++++                          +|++..+++++|.++...|++++|+.+|+++++++|++.. +.++|.
T Consensus        80 ~~~al~~--------------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  133 (568)
T 2vsy_A           80 LQQASDA--------------------------APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLN  133 (568)
T ss_dssp             HHHHHHH--------------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHhc--------------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            9999999                          8999999999999999999999999999999999999999 999999


Q ss_pred             HHHHc---CCHHHHHHHHHHhcccccCC
Q 009850          218 CLMKQ---GRIGEAKETLRRVKPAVADG  242 (524)
Q Consensus       218 ~~~~~---G~~~eA~~~~~~a~~~~~~~  242 (524)
                      ++..+   |++++|+..|++++...+..
T Consensus       134 ~~~~~~~~g~~~~A~~~~~~al~~~p~~  161 (568)
T 2vsy_A          134 WRRRLCDWRALDVLSAQVRAAVAQGVGA  161 (568)
T ss_dssp             HHHHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred             HHHHhhccccHHHHHHHHHHHHhcCCcc
Confidence            99999   99999999999655544443

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.71  E-value=4e-17  Score=148.68  Aligned_cols=166  Identities=15%  Similarity=0.042  Sum_probs=144.2

Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhccc
Q 009850           77 DRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKR  156 (524)
Q Consensus        77 p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~  156 (524)
                      |...+.++.+|..+...|++++|+..|+++++.+|+++  .++..+|.++...|++++|+..|++++..           
T Consensus         3 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~--~a~~~la~~~~~~g~~~~A~~~~~~a~~~-----------   69 (176)
T 2r5s_A            3 ASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRG--DVKLAKADCLLETKQFELAQELLATIPLE-----------   69 (176)
T ss_dssp             ---CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSH--HHHHHHHHHHHHTTCHHHHHHHHTTCCGG-----------
T ss_pred             CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH--HHHHHHHHHHHHCCCHHHHHHHHHHhhhc-----------
Confidence            44456688999999999999999999999999999997  78899999999999999999999999887           


Q ss_pred             HHHHHHHhHHHHHhcCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHH
Q 009850          157 TKTARSQGKKFQVSVEQEATRLLGNLGWALM-QQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRR  234 (524)
Q Consensus       157 ~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~-~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~  234 (524)
                                     +| ++..+..++.+.. ..+...+|+..|+++++.+|+++. ++++|.++...|++++|+..|+ 
T Consensus        70 ---------------~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~-  132 (176)
T 2r5s_A           70 ---------------YQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLW-  132 (176)
T ss_dssp             ---------------GC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHH-
T ss_pred             ---------------cC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHH-
Confidence                           78 7777666665533 334455689999999999999999 9999999999999999999999 


Q ss_pred             hcccccCCCcCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHhhccc
Q 009850          235 VKPAVADGPRGVDSHLKAYERAQQMLKDL--ESEMMNKGGDRVEQSRLFDAFLGSSSIWQ  292 (524)
Q Consensus       235 a~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~a~~~lg~~~~~~g~~~eAi~~~~~al~  292 (524)
                                          +++...|+.  ..++.++|.++..+|+.++|+..|++++.
T Consensus       133 --------------------~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~  172 (176)
T 2r5s_A          133 --------------------NILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY  172 (176)
T ss_dssp             --------------------HHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             --------------------HHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence                                677778765  56999999999999999999999998763

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.70  E-value=2.4e-16  Score=135.74  Aligned_cols=118  Identities=8%  Similarity=-0.060  Sum_probs=111.9

Q ss_pred             cCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 009850           41 KVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDN  120 (524)
Q Consensus        41 ~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~  120 (524)
                      ..|...+.|..+|..++..|+|++|+..|+++++.+|+++.+|+++|.+|..+|++++|+..|+++++++|+++  .++.
T Consensus         8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~--~a~~   85 (126)
T 4gco_A            8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFI--KGYI   85 (126)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHH
T ss_pred             HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhh--HHHH
Confidence            44666778999999999999999999999999999999999999999999999999999999999999999997  7889


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHH
Q 009850          121 ILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWAL  186 (524)
Q Consensus       121 ~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~  186 (524)
                      .+|.+|..+|++++|+..|++++++                          +|++..++.+++.++
T Consensus        86 ~lg~~~~~~~~~~~A~~~~~~al~l--------------------------~P~~~~a~~~l~~~l  125 (126)
T 4gco_A           86 RKAACLVAMREWSKAQRAYEDALQV--------------------------DPSNEEAREGVRNCL  125 (126)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH--------------------------CTTCHHHHHHHHHHC
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHH--------------------------CcCCHHHHHHHHHhc
Confidence            9999999999999999999999999                          999999999999874

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.69  E-value=4.9e-17  Score=144.91  Aligned_cols=119  Identities=12%  Similarity=0.049  Sum_probs=109.4

Q ss_pred             HHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 009850           64 KAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKL  143 (524)
Q Consensus        64 ~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al  143 (524)
                      .+-..|++++.++|++..+++.+|.++...|++++|+..|++++.++|+++  .++..+|.+|...|++++|+.+|++++
T Consensus        20 ~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~--~~~~~lg~~~~~~g~~~~Ai~~~~~al   97 (151)
T 3gyz_A           20 NSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNV--DYIMGLAAIYQIKEQFQQAADLYAVAF   97 (151)
T ss_dssp             HTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence            344567778888999999999999999999999999999999999999997  788899999999999999999999999


Q ss_pred             HHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH
Q 009850          144 YLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNN  210 (524)
Q Consensus       144 ~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~  210 (524)
                      ++                          +|+++.+|+++|.+|..+|++++|+.+|++++++.|+.+
T Consensus        98 ~l--------------------------~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A           98 AL--------------------------GKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             HH--------------------------SSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             hh--------------------------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            99                          899999999999999999999999999999999999875

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.68  E-value=4.9e-16  Score=149.93  Aligned_cols=196  Identities=17%  Similarity=0.172  Sum_probs=155.4

Q ss_pred             CCccchhhhhhhHHHHh--cCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHc
Q 009850           24 KPLGVSRTRSDSFHAIH--KVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINA--------GDRVDSALKDMAIVMKQQ   93 (524)
Q Consensus        24 ~~~~~l~~~~~~~~~~~--~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~--------~p~~~~a~~~La~~~~~~   93 (524)
                      ......+.+...+....  ..|....++..+|.++...|++++|+.+|++++..        .|....++..+|.++...
T Consensus        19 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~   98 (283)
T 3edt_B           19 SAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKR   98 (283)
T ss_dssp             SHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHh
Confidence            33334444555444443  22455678999999999999999999999999987        466778899999999999


Q ss_pred             CCHHHHHHHHHHHHHhC-----CCc-HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHH
Q 009850           94 NRAEEAIEAIKSLRSRC-----SDQ-AQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKF  167 (524)
Q Consensus        94 g~~~eAi~~~~~al~~~-----p~~-~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~  167 (524)
                      |++++|+.+|++++...     +++ ....++..+|.+|...|++++|+.+|++++.+.....                 
T Consensus        99 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-----------------  161 (283)
T 3edt_B           99 GKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRL-----------------  161 (283)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHS-----------------
T ss_pred             ccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc-----------------
Confidence            99999999999999983     322 2247888999999999999999999999998721000                 


Q ss_pred             HHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----------------------------------------
Q 009850          168 QVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIA-----------------------------------------  206 (524)
Q Consensus       168 ~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-----------------------------------------  206 (524)
                       ....|....++.++|.++...|++++|+.+|++++.+.                                         
T Consensus       162 -~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (283)
T 3edt_B          162 -GPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSW  240 (283)
T ss_dssp             -CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC----------
T ss_pred             -CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence             00034457799999999999999999999999999862                                         


Q ss_pred             --------CCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcc
Q 009850          207 --------PDNNK-MCNLGICLMKQGRIGEAKETLRRVKP  237 (524)
Q Consensus       207 --------P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~  237 (524)
                              |.... +..+|.+|..+|++++|+.+|++++.
T Consensus       241 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  280 (283)
T 3edt_B          241 YKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR  280 (283)
T ss_dssp             --CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                    22233 78899999999999999999997643

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.67  E-value=9.7e-15  Score=148.46  Aligned_cols=231  Identities=12%  Similarity=0.038  Sum_probs=167.7

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--H--HHH
Q 009850           47 TPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVD-----SALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQ--A--QES  117 (524)
Q Consensus        47 ~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~-----~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~--~--~~~  117 (524)
                      ..+..+|.+++..|++++|+..+++++...|...     .++..+|.++...|++++|+..+++++.+.+..  .  ...
T Consensus        15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~   94 (373)
T 1hz4_A           15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW   94 (373)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence            4567889999999999999999999999876543     267889999999999999999999999886632  2  134


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 009850          118 LDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAED  197 (524)
Q Consensus       118 l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~  197 (524)
                      ....+|.++...|++++|+..|++++.+......                  ...|....++.++|.++...|++++|+.
T Consensus        95 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~------------------~~~~~~~~~~~~la~~~~~~g~~~~A~~  156 (373)
T 1hz4_A           95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHL------------------EQLPMHEFLVRIRAQLLWAWARLDEAEA  156 (373)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC------------------TTSTHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcc------------------ccCcHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            5678899999999999999999999987321000                  0013345677888999999999999999


Q ss_pred             HHHHHHhhCCCc-----HH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCC--------------------CcCHHHHHH
Q 009850          198 AYRRALSIAPDN-----NK-MCNLGICLMKQGRIGEAKETLRRVKPAVADG--------------------PRGVDSHLK  251 (524)
Q Consensus       198 ~~~~Al~l~P~~-----~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~--------------------~~~~~~A~~  251 (524)
                      ++++++.+.+..     .. +.++|.++...|++++|..+++++.......                    .++.++|..
T Consensus       157 ~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~  236 (373)
T 1hz4_A          157 SARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAAN  236 (373)
T ss_dssp             HHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHH
Confidence            999998887652     23 7788889999999999998888764321110                    134444555


Q ss_pred             HHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHhhcccCCC
Q 009850          252 AYERAQQMLKDL----ESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQP  295 (524)
Q Consensus       252 ~~~~al~~~p~~----~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P  295 (524)
                      .+++++...+..    ...+..+|.++...|++++|+..++.++...+
T Consensus       237 ~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~  284 (373)
T 1hz4_A          237 WLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENAR  284 (373)
T ss_dssp             HHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            555555444332    22455666677777777777776666655433

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.66  E-value=6.7e-15  Score=124.93  Aligned_cols=135  Identities=24%  Similarity=0.275  Sum_probs=122.9

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 009850           47 TPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLY  126 (524)
Q Consensus        47 ~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~  126 (524)
                      .+|+.+|.++...|++++|+..|++++...|++..++..+|.++...|++++|+.++++++...|.+.  ..+..+|.++
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~   79 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA--EAWYNLGNAY   79 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHH
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCch--HHHHHHHHHH
Confidence            46888999999999999999999999999999999999999999999999999999999999999886  6678889999


Q ss_pred             HHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 009850          127 KRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIA  206 (524)
Q Consensus       127 ~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~  206 (524)
                      ...|++++|+..+++++..                          .|.+..++..+|.++...|++++|+.+|++++..+
T Consensus        80 ~~~~~~~~A~~~~~~~~~~--------------------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  133 (136)
T 2fo7_A           80 YKQGDYDEAIEYYQKALEL--------------------------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD  133 (136)
T ss_dssp             HTTTCHHHHHHHHHHHHHH--------------------------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred             HHhcCHHHHHHHHHHHHHh--------------------------CCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence            9999999999999999888                          78888899999999999999999999999999988


Q ss_pred             CCc
Q 009850          207 PDN  209 (524)
Q Consensus       207 P~~  209 (524)
                      |++
T Consensus       134 ~~~  136 (136)
T 2fo7_A          134 PRS  136 (136)
T ss_dssp             TTC
T ss_pred             CCC
Confidence            863

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.66  E-value=8.3e-14  Score=147.60  Aligned_cols=119  Identities=14%  Similarity=0.079  Sum_probs=87.0

Q ss_pred             CCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHc-----CCHHHHHHHHHHhcccccC
Q 009850          172 EQEATRLLGNLGWALMQ----QNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQ-----GRIGEAKETLRRVKPAVAD  241 (524)
Q Consensus       172 ~p~~~~a~~~Lg~~~~~----~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~-----G~~~eA~~~~~~a~~~~~~  241 (524)
                      +.+++.+++++|.+|..    .+++++|+.+|+++++.  .++. ++++|.+|...     +++++|+.+|+++......
T Consensus       251 ~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~  328 (490)
T 2xm6_A          251 EQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDA  328 (490)
T ss_dssp             TTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCH
T ss_pred             HCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCH
Confidence            45667777777777777    77788888888877754  4455 77788888777     7888888888876433211


Q ss_pred             C--------------CcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHhhcccCC
Q 009850          242 G--------------PRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVE----QSRLFDAFLGSSSIWQPQ  294 (524)
Q Consensus       242 ~--------------~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~----~g~~~eAi~~~~~al~~~  294 (524)
                      .              ..+.++|+..|+++.+.  .++.+++++|.+|..    .+++++|+..|+++.+..
T Consensus       329 ~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~  397 (490)
T 2xm6_A          329 TAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG  397 (490)
T ss_dssp             HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC
Confidence            1              12567788888888876  667888888888888    788888888888887754

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.66  E-value=1.5e-15  Score=164.15  Aligned_cols=158  Identities=15%  Similarity=0.041  Sum_probs=132.8

Q ss_pred             cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcC
Q 009850           93 QNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVE  172 (524)
Q Consensus        93 ~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~  172 (524)
                      .|++++|+..|+++++.+|++.  .++..+|.+|...|++++|+..|++++++                          +
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------------------------~   53 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDF--VAWLMLADAELGMGDTTAGEMAVQRGLAL--------------------------H   53 (568)
T ss_dssp             -------------------CCH--HHHHHHHHHHHHHTCHHHHHHHHHHHHTT--------------------------S
T ss_pred             CccHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------------------C
Confidence            4789999999999999999987  78899999999999999999999999998                          8


Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHH
Q 009850          173 QEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLK  251 (524)
Q Consensus       173 p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~  251 (524)
                      |++..+++++|.+|...|++++|+.+|+++++++|++.. ++++|.++..+|++++|+..|+                  
T Consensus        54 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~------------------  115 (568)
T 2vsy_A           54 PGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYT------------------  115 (568)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH------------------
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH------------------
Confidence            999999999999999999999999999999999999998 9999999999999999999999                  


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHhhcccCCCCCCC
Q 009850          252 AYERAQQMLKDLESEMMNKGGDRVEQ---SRLFDAFLGSSSIWQPQPCKDH  299 (524)
Q Consensus       252 ~~~~al~~~p~~~~a~~~lg~~~~~~---g~~~eAi~~~~~al~~~P~~~~  299 (524)
                         ++++..|++..++.++|.++..+   |++++|+..|+++++.+|....
T Consensus       116 ---~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~  163 (568)
T 2vsy_A          116 ---RAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVE  163 (568)
T ss_dssp             ---HHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSC
T ss_pred             ---HHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccC
Confidence               78888999999999999999999   9999999999999999988654

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.66  E-value=5.6e-14  Score=148.92  Aligned_cols=239  Identities=11%  Similarity=0.021  Sum_probs=170.2

Q ss_pred             CCChHHHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcH
Q 009850           43 PVGDTPYVRAKNVQLV----DKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQ----QNRAEEAIEAIKSLRSRCSDQA  114 (524)
Q Consensus        43 p~~~~~~~~lg~~~~~----~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~----~g~~~eAi~~~~~al~~~p~~~  114 (524)
                      ..++++++.+|.++..    .+++++|+.+|+++++.  +++.+++.||.+|..    .+++++|+.+|+++....  ++
T Consensus        36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~  111 (490)
T 2xm6_A           36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--LP  111 (490)
T ss_dssp             TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CH
T ss_pred             CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CH
Confidence            4577899999999999    99999999999999986  678999999999999    999999999999998864  44


Q ss_pred             HHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHhh------ccHhhh-----cccHHHHHHHhHHHHHhcCCCcHHHH
Q 009850          115 QESLDNILLDLYKR----CGRLDDQIALLKHKLYLIQ------QGLAFN-----GKRTKTARSQGKKFQVSVEQEATRLL  179 (524)
Q Consensus       115 ~~~l~~~lg~~~~~----~g~~~eA~~~~~~al~l~~------~~~~~~-----~~~~~~a~~~~~~~~~~~~p~~~~a~  179 (524)
                        ..++.+|.+|..    .+++++|+.+|+++.....      .+..+.     .+..+.+....+.   ..+.+++.++
T Consensus       112 --~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~---a~~~~~~~a~  186 (490)
T 2xm6_A          112 --QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSK---AAEQGNVWSC  186 (490)
T ss_dssp             --HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH---HHHTTCHHHH
T ss_pred             --HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH---HHHCCCHHHH
Confidence              566788999998    8999999999999987531      111121     1122222222221   1134567777


Q ss_pred             HHHHHHHHH----cCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHH----cCCHHHHHHHHHHhcccccC---------
Q 009850          180 GNLGWALMQ----QNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMK----QGRIGEAKETLRRVKPAVAD---------  241 (524)
Q Consensus       180 ~~Lg~~~~~----~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~----~G~~~eA~~~~~~a~~~~~~---------  241 (524)
                      +++|.+|..    .+++++|+.+|+++++.  .++. ++++|.+|..    .+++++|+.+|+++......         
T Consensus       187 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~  264 (490)
T 2xm6_A          187 NQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYI  264 (490)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            777777777    67777777777777764  2344 6777777776    67777777777776332110         


Q ss_pred             ------CCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHhhcccCC
Q 009850          242 ------GPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQ-----SRLFDAFLGSSSIWQPQ  294 (524)
Q Consensus       242 ------~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~-----g~~~eAi~~~~~al~~~  294 (524)
                            ..++.++|+..|+++.+.  .++.+++.+|.+|...     +++++|+..|+++.+..
T Consensus       265 y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~  326 (490)
T 2xm6_A          265 LEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG  326 (490)
T ss_dssp             HHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT
T ss_pred             HHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC
Confidence                  125566677777776654  5566777777777776     67777777777776653

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.65  E-value=5.6e-15  Score=158.23  Aligned_cols=214  Identities=7%  Similarity=-0.088  Sum_probs=185.2

Q ss_pred             HHHhcCCCChHHHHHHHHHHHH-------cCChH-------HHHHHHHHHHH-cCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 009850           37 HAIHKVPVGDTPYVRAKNVQLV-------DKDPE-------KAIPLFWAAIN-AGDRVDSALKDMAIVMKQQNRAEEAIE  101 (524)
Q Consensus        37 ~~~~~~p~~~~~~~~lg~~~~~-------~g~~~-------~Ai~~~~~al~-~~p~~~~a~~~La~~~~~~g~~~eAi~  101 (524)
                      .++...|..++.|+.+|..+..       .|+++       +|+..|++++. ..|++...|..+|.++...|++++|..
T Consensus       263 ~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~  342 (530)
T 2ooe_A          263 QCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHS  342 (530)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHH
Confidence            4556679999999999999886       79987       99999999997 799999999999999999999999999


Q ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHH
Q 009850          102 AIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGN  181 (524)
Q Consensus       102 ~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~  181 (524)
                      .|++++...|.++. .+|..++.++.+.|++++|+..|+++++.                          .|.....+..
T Consensus       343 ~~~~al~~~p~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--------------------------~~~~~~~~~~  395 (530)
T 2ooe_A          343 IYNRLLAIEDIDPT-LVYIQYMKFARRAEGIKSGRMIFKKARED--------------------------ARTRHHVYVT  395 (530)
T ss_dssp             HHHHHHHSSSSCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------TTCCTHHHHH
T ss_pred             HHHHHhCccccCch-HHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------------------------cCCchHHHHH
Confidence            99999999998742 47888899999999999999999999987                          5666666666


Q ss_pred             HHHH-HHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHh
Q 009850          182 LGWA-LMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQM  259 (524)
Q Consensus       182 Lg~~-~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~  259 (524)
                      .+.+ +...|++++|...|+++++..|+++. |.+++..+...|+.++|...|+                     +++..
T Consensus       396 ~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~---------------------~al~~  454 (530)
T 2ooe_A          396 AALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFE---------------------RVLTS  454 (530)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHH---------------------HHHHS
T ss_pred             HHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHH---------------------HHHhc
Confidence            6655 34689999999999999999999999 9999999999999999999999                     45555


Q ss_pred             CCCC----HHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCC
Q 009850          260 LKDL----ESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKD  298 (524)
Q Consensus       260 ~p~~----~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~  298 (524)
                      .|..    ...|..........|+.+.+...+.++.+..|.+.
T Consensus       455 ~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~~~  497 (530)
T 2ooe_A          455 GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY  497 (530)
T ss_dssp             CCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCchhc
Confidence            4433    34777777788889999999999999998888543

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.65  E-value=1.7e-16  Score=154.64  Aligned_cols=201  Identities=9%  Similarity=-0.013  Sum_probs=173.6

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHHhCCCcH-------
Q 009850           49 YVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDM-------AIVMKQQNRAEEAIEAIKSLRSRCSDQA-------  114 (524)
Q Consensus        49 ~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~L-------a~~~~~~g~~~eAi~~~~~al~~~p~~~-------  114 (524)
                      +|..|.-+ ..+++..|...|.+++..+|+..++|.++       +.++..++++.+++..+++.+.+.|...       
T Consensus        10 ~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~   88 (282)
T 4f3v_A           10 LFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIG   88 (282)
T ss_dssp             HHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECC
T ss_pred             HHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccC
Confidence            56666665 68999999999999999999999999999       8999999999999999999999887431       


Q ss_pred             ------------HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHH
Q 009850          115 ------------QESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNL  182 (524)
Q Consensus       115 ------------~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~L  182 (524)
                                  ...+...++.++...|+|++|.+.|..++..                          .|++. +++.+
T Consensus        89 g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--------------------------~p~~~-~~~~~  141 (282)
T 4f3v_A           89 GLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--------------------------GSEHL-VAWMK  141 (282)
T ss_dssp             TTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--------------------------TCHHH-HHHHH
T ss_pred             CcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------------------------CCchH-HHHHH
Confidence                        1245667888899999999999999988766                          78888 99999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCc--HH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHh
Q 009850          183 GWALMQQNNYIEAEDAYRRALSIAPDN--NK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQM  259 (524)
Q Consensus       183 g~~~~~~g~~~eAi~~~~~Al~l~P~~--~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~  259 (524)
                      |.++++.++|++|+.+|+.++...+..  .. ++++|.++..+|++++|+.+|+++                     ...
T Consensus       142 a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a---------------------~~g  200 (282)
T 4f3v_A          142 AVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEA---------------------NDS  200 (282)
T ss_dssp             HHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------------HTS
T ss_pred             HHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHH---------------------hcC
Confidence            999999999999999999887753221  22 899999999999999999999954                     322


Q ss_pred             C--CC-CHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCC
Q 009850          260 L--KD-LESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  299 (524)
Q Consensus       260 ~--p~-~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~  299 (524)
                      .  |. ...+++++|.++..+|+.++|+..|++++..+|. ..
T Consensus       201 ~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~  242 (282)
T 4f3v_A          201 PAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PK  242 (282)
T ss_dssp             TTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HH
T ss_pred             CCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HH
Confidence            2  44 5679999999999999999999999999999998 44

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.64  E-value=2.4e-17  Score=166.65  Aligned_cols=198  Identities=12%  Similarity=0.094  Sum_probs=156.9

Q ss_pred             cCChHHHHHHHHH----HHHcCCCcHHHHHHHHHHHH------------HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 009850           59 DKDPEKAIPLFWA----AINAGDRVDSALKDMAIVMK------------QQNRAEEAIEAIKSLRSRCSDQAQESLDNIL  122 (524)
Q Consensus        59 ~g~~~~Ai~~~~~----al~~~p~~~~a~~~La~~~~------------~~g~~~eAi~~~~~al~~~p~~~~~~l~~~l  122 (524)
                      .+.+++|+..+..    ++.+.|+.  +|..+|....            .++++++|+..|++++...|..+  ..+..+
T Consensus        78 ~~~~e~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a--~~~~~~  153 (336)
T 1p5q_A           78 PYGLERAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQS--TIVKER  153 (336)
T ss_dssp             CHHHHHHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHH--HHHHHH
T ss_pred             chHHHHHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHH--HHHHHH
Confidence            4567888888888    78888876  5555654442            45677888888888888777766  677888


Q ss_pred             HHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009850          123 LDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRA  202 (524)
Q Consensus       123 g~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~A  202 (524)
                      |.+|...|++++|+..|++++.+.+....+..   +.        .....|....+++++|.+|...|+|++|+.+|+++
T Consensus       154 g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~---~~--------~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a  222 (336)
T 1p5q_A          154 GTVYFKEGKYKQALLQYKKIVSWLEYESSFSN---EE--------AQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA  222 (336)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCS---HH--------HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHhhccccCCh---HH--------HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            99999999999999999999988221100000   00        00001112689999999999999999999999999


Q ss_pred             HhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 009850          203 LSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLF  281 (524)
Q Consensus       203 l~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~  281 (524)
                      ++++|++.. ++++|.+|..+|++++|+.+|+                     +++++.|++..++.++|.++..+|++.
T Consensus       223 l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~---------------------~al~l~P~~~~a~~~l~~~~~~~~~~~  281 (336)
T 1p5q_A          223 LELDSNNEKGLSRRGEAHLAVNDFELARADFQ---------------------KVLQLYPNNKAAKTQLAVCQQRIRRQL  281 (336)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH---------------------HHHHHCSSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHH---------------------HHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence            999999999 9999999999999999999999                     889999999999999999999999999


Q ss_pred             HHHH-HHhhccc
Q 009850          282 DAFL-GSSSIWQ  292 (524)
Q Consensus       282 eAi~-~~~~al~  292 (524)
                      +|.. .|+.++.
T Consensus       282 ~a~~~~~~~~~~  293 (336)
T 1p5q_A          282 AREKKLYANMFE  293 (336)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            9944 5666653

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.64  E-value=6.7e-16  Score=137.49  Aligned_cols=113  Identities=13%  Similarity=0.152  Sum_probs=103.3

Q ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHH
Q 009850           99 AIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRL  178 (524)
Q Consensus        99 Ai~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a  178 (524)
                      +-..+++++.++|++.  ..++.+|.++...|++++|+..|++++.+                          +|+++.+
T Consensus        21 ~~~~l~~al~l~p~~~--~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------------------------~P~~~~~   72 (151)
T 3gyz_A           21 SGATLKDINAIPDDMM--DDIYSYAYDFYNKGRIEEAEVFFRFLCIY--------------------------DFYNVDY   72 (151)
T ss_dssp             TSCCTGGGCCSCHHHH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------------CTTCHHH
T ss_pred             CCCCHHHHhCCCHHHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------------------CCCCHHH
Confidence            3355677788889887  78889999999999999999999999999                          9999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccc
Q 009850          179 LGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAV  239 (524)
Q Consensus       179 ~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~  239 (524)
                      |+++|.++...|+|++|+.+|+++++++|+++. |+++|.||..+|++++|+.+|++++...
T Consensus        73 ~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~  134 (151)
T 3gyz_A           73 IMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHS  134 (151)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            999999999999999999999999999999999 9999999999999999999999554433

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.64  E-value=1.1e-15  Score=135.38  Aligned_cols=120  Identities=14%  Similarity=0.010  Sum_probs=109.1

Q ss_pred             HHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 009850           64 KAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKL  143 (524)
Q Consensus        64 ~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al  143 (524)
                      .+...|++++..+|++..+++.+|.++...|++++|+..|++++..+|+++  .+++.+|.+|...|++++|+.+|++++
T Consensus         5 ~~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al   82 (148)
T 2vgx_A            5 SGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDS--RFFLGLGACRQAMGQYDLAIHSYSYGA   82 (148)
T ss_dssp             -CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             chhhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccH--HHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            344568889999999999999999999999999999999999999999987  677889999999999999999999999


Q ss_pred             HHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q 009850          144 YLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK  211 (524)
Q Consensus       144 ~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~  211 (524)
                      .+                          +|+++.+++++|.+|...|++++|+.+|+++++++|+++.
T Consensus        83 ~l--------------------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  124 (148)
T 2vgx_A           83 VM--------------------------DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPE  124 (148)
T ss_dssp             HH--------------------------STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGG
T ss_pred             hc--------------------------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCc
Confidence            98                          8999999999999999999999999999999999988766

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.64  E-value=5.1e-15  Score=145.63  Aligned_cols=191  Identities=13%  Similarity=0.081  Sum_probs=155.2

Q ss_pred             CCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 009850           43 PVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNIL  122 (524)
Q Consensus        43 p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~l  122 (524)
                      |.....++.+|..++..|++++|+..|++++..+|++..++.++|.+|..+|++++|+..|+++++++|++.  .+++.+
T Consensus         1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~l   78 (281)
T 2c2l_A            1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV--KAHFFL   78 (281)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCH--HHHHHH
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH--HHHHHH
Confidence            345678999999999999999999999999999999999999999999999999999999999999999997  788899


Q ss_pred             HHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHH-----HHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 009850          123 LDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTA-----RSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAED  197 (524)
Q Consensus       123 g~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a-----~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~  197 (524)
                      |.+|...|++++|+..|++++++.+.............     ............|.+..+...++.++  .|++++|++
T Consensus        79 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~~  156 (281)
T 2c2l_A           79 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRLI--AAERERELE  156 (281)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHHH
Confidence            99999999999999999999998764321111110000     01111122334677777777777765  699999999


Q ss_pred             HHHHHHhhCCCcHH-HHHHHHHHHHc-CCHHHHHHHHHHhcc
Q 009850          198 AYRRALSIAPDNNK-MCNLGICLMKQ-GRIGEAKETLRRVKP  237 (524)
Q Consensus       198 ~~~~Al~l~P~~~~-~~~Lg~~~~~~-G~~~eA~~~~~~a~~  237 (524)
                      .|+++++.+|++.. ...++..+.+. +++++|...|.++..
T Consensus       157 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~  198 (281)
T 2c2l_A          157 ECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE  198 (281)
T ss_dssp             TTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             HHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            99999999999887 66677777666 778999999998754

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.63  E-value=6.1e-15  Score=144.60  Aligned_cols=178  Identities=20%  Similarity=0.186  Sum_probs=147.6

Q ss_pred             CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---
Q 009850           42 VPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINA--------GDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRC---  110 (524)
Q Consensus        42 ~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~--------~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~---  110 (524)
                      .+.....+..+|.++...|++++|+.+|++++..        .|....++..+|.++...|++++|+.+|++++...   
T Consensus        65 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~  144 (311)
T 3nf1_A           65 HPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV  144 (311)
T ss_dssp             SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHh
Confidence            3455668899999999999999999999999987        46677889999999999999999999999999884   


Q ss_pred             --CCc-HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHH
Q 009850          111 --SDQ-AQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALM  187 (524)
Q Consensus       111 --p~~-~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~  187 (524)
                        ++. ....++..+|.++...|++++|+.+|++++.+.....                  ....|....++..+|.++.
T Consensus       145 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~------------------~~~~~~~~~~~~~la~~~~  206 (311)
T 3nf1_A          145 LGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL------------------GPDDPNVAKTKNNLASCYL  206 (311)
T ss_dssp             HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS------------------CTTCHHHHHHHHHHHHHHH
T ss_pred             cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHHH
Confidence              322 2246788999999999999999999999998721100                  0003445778999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhC-------------------------------------------------CCcHH-HHHHHH
Q 009850          188 QQNNYIEAEDAYRRALSIA-------------------------------------------------PDNNK-MCNLGI  217 (524)
Q Consensus       188 ~~g~~~eAi~~~~~Al~l~-------------------------------------------------P~~~~-~~~Lg~  217 (524)
                      ..|++++|+.+|++++...                                                 |.... +.++|.
T Consensus       207 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~  286 (311)
T 3nf1_A          207 KQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGA  286 (311)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHH
Confidence            9999999999999999853                                                 33444 889999


Q ss_pred             HHHHcCCHHHHHHHHHHhcc
Q 009850          218 CLMKQGRIGEAKETLRRVKP  237 (524)
Q Consensus       218 ~~~~~G~~~eA~~~~~~a~~  237 (524)
                      +|..+|++++|+.+|++++.
T Consensus       287 ~~~~~g~~~~A~~~~~~al~  306 (311)
T 3nf1_A          287 LYRRQGKFEAAETLEEAAMR  306 (311)
T ss_dssp             HHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHH
Confidence            99999999999999996543

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.62  E-value=5.2e-14  Score=139.76  Aligned_cols=189  Identities=10%  Similarity=-0.024  Sum_probs=168.2

Q ss_pred             HHcCCh-HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----HHc
Q 009850           57 LVDKDP-EKAIPLFWAAINAGDRVDSALKDMAIVMKQQN--RAEEAIEAIKSLRSRCSDQAQESLDNILLDLY----KRC  129 (524)
Q Consensus        57 ~~~g~~-~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g--~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~----~~~  129 (524)
                      ...|.+ ++|+.++.++|.++|++..+|+.++.++..+|  ++++++..+..++..+|++.  .+|+..+.++    ...
T Consensus        43 ~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y--~aW~~R~~iL~~~~~~l  120 (306)
T 3dra_A           43 MKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNY--QIWNYRQLIIGQIMELN  120 (306)
T ss_dssp             HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCC--HHHHHHHHHHHHHHHHT
T ss_pred             HHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccH--HHHHHHHHHHHHHHHhc
Confidence            445555 69999999999999999999999999999999  99999999999999999986  6777777777    666


Q ss_pred             ---CChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHH--HHHHHHHHHHh
Q 009850          130 ---GRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYI--EAEDAYRRALS  204 (524)
Q Consensus       130 ---g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~--eAi~~~~~Al~  204 (524)
                         +++++++.++.++++.                          +|.+..+|+..++++...|+++  ++++++.++++
T Consensus       121 ~~~~~~~~EL~~~~~~l~~--------------------------~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~  174 (306)
T 3dra_A          121 NNDFDPYREFDILEAMLSS--------------------------DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVID  174 (306)
T ss_dssp             TTCCCTHHHHHHHHHHHHH--------------------------CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             cccCCHHHHHHHHHHHHHh--------------------------CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHH
Confidence               8999999999999999                          9999999999999999999999  99999999999


Q ss_pred             hCCCcHH-HHHHHHHHHHcCC------HHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 009850          205 IAPDNNK-MCNLGICLMKQGR------IGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQ  277 (524)
Q Consensus       205 l~P~~~~-~~~Lg~~~~~~G~------~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~  277 (524)
                      .+|.+.. |++++.++...|+      +++++.++.                     +++..+|++..+|+.++.++...
T Consensus       175 ~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~---------------------~aI~~~p~n~SaW~y~~~ll~~~  233 (306)
T 3dra_A          175 TDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVK---------------------DKIVKCPQNPSTWNYLLGIHERF  233 (306)
T ss_dssp             HCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHH---------------------HHHHHCSSCHHHHHHHHHHHHHT
T ss_pred             hCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHH---------------------HHHHhCCCCccHHHHHHHHHHhc
Confidence            9999999 9999999998886      555555555                     89999999999999999999999


Q ss_pred             CCHHHHH-HHHhhcccCC
Q 009850          278 SRLFDAF-LGSSSIWQPQ  294 (524)
Q Consensus       278 g~~~eAi-~~~~~al~~~  294 (524)
                      |+..+++ ....+++..+
T Consensus       234 ~~~~~~~~~~~~~~~~~~  251 (306)
T 3dra_A          234 DRSITQLEEFSLQFVDLE  251 (306)
T ss_dssp             TCCGGGGHHHHHTTEEGG
T ss_pred             CCChHHHHHHHHHHHhcc
Confidence            9966654 4666676654

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.62  E-value=5.1e-14  Score=143.09  Aligned_cols=228  Identities=13%  Similarity=0.021  Sum_probs=179.3

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------cHH
Q 009850           48 PYVRAKNVQLVDKDPEKAIPLFWAAINAGDRV------DSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSD------QAQ  115 (524)
Q Consensus        48 ~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~------~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~------~~~  115 (524)
                      ++..+|.++...|++++|+..+++++...+..      ..++..+|.++...|++++|+.++++++...+.      ...
T Consensus        55 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~  134 (373)
T 1hz4_A           55 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMH  134 (373)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHH
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHH
Confidence            57889999999999999999999999875432      234788999999999999999999999987631      122


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Q 009850          116 ESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEA  195 (524)
Q Consensus       116 ~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eA  195 (524)
                      ..++..+|.++...|++++|+.++++++.+.+...                     .+....++.++|.++...|++++|
T Consensus       135 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---------------------~~~~~~~~~~la~~~~~~g~~~~A  193 (373)
T 1hz4_A          135 EFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQ---------------------PQQQLQCLAMLIQCSLARGDLDNA  193 (373)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC---------------------GGGGHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccC---------------------cHHHHHHHHHHHHHHHHcCCHHHH
Confidence            35667899999999999999999999998732100                     112356888999999999999999


Q ss_pred             HHHHHHHHhhCCC--c-HHHH-----HHHHHHHHcCCHHHHHHHHHHhcccccCCC-----------------cCHHHHH
Q 009850          196 EDAYRRALSIAPD--N-NKMC-----NLGICLMKQGRIGEAKETLRRVKPAVADGP-----------------RGVDSHL  250 (524)
Q Consensus       196 i~~~~~Al~l~P~--~-~~~~-----~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~-----------------~~~~~A~  250 (524)
                      +.++++++.+.+.  . ..+.     .++.++...|++++|...++++....+...                 ++.++|.
T Consensus       194 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  273 (373)
T 1hz4_A          194 RSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAE  273 (373)
T ss_dssp             HHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHH
Confidence            9999999887432  2 2221     345568899999999999999866544321                 6677888


Q ss_pred             HHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCC
Q 009850          251 KAYERAQQMLKD------LESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPC  296 (524)
Q Consensus       251 ~~~~~al~~~p~------~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~  296 (524)
                      ..+++++...+.      ...++..+|.++...|++++|...++.++...+.
T Consensus       274 ~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~  325 (373)
T 1hz4_A          274 IVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR  325 (373)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc
Confidence            888888776543      2357888999999999999999999999877554

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.62  E-value=7.9e-16  Score=155.53  Aligned_cols=152  Identities=16%  Similarity=0.139  Sum_probs=140.0

Q ss_pred             HcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-------------HHHHHHHHHH
Q 009850           58 VDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQA-------------QESLDNILLD  124 (524)
Q Consensus        58 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~-------------~~~l~~~lg~  124 (524)
                      ..+++++|+..|++++..+|++..++..+|.++...|++++|+..|++++.+.|.+.             ...++..+|.
T Consensus       125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~  204 (336)
T 1p5q_A          125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM  204 (336)
T ss_dssp             EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred             EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence            456788899999999999999999999999999999999999999999999999872             1268889999


Q ss_pred             HHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009850          125 LYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALS  204 (524)
Q Consensus       125 ~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~  204 (524)
                      +|...|++++|+.+|++++++                          +|+++.+++++|.+|..+|++++|+.+|+++++
T Consensus       205 ~~~~~g~~~~A~~~~~~al~~--------------------------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~  258 (336)
T 1p5q_A          205 CHLKLQAFSAAIESCNKALEL--------------------------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ  258 (336)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH--------------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHh--------------------------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            999999999999999999999                          999999999999999999999999999999999


Q ss_pred             hCCCcHH-HHHHHHHHHHcCCHHHHH-HHHHHh
Q 009850          205 IAPDNNK-MCNLGICLMKQGRIGEAK-ETLRRV  235 (524)
Q Consensus       205 l~P~~~~-~~~Lg~~~~~~G~~~eA~-~~~~~a  235 (524)
                      ++|++.. +.++|.++..+|++++|. ..|+++
T Consensus       259 l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~  291 (336)
T 1p5q_A          259 LYPNNKAAKTQLAVCQQRIRRQLAREKKLYANM  291 (336)
T ss_dssp             HCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999 999999999999999994 456643

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.62  E-value=6.1e-15  Score=146.78  Aligned_cols=178  Identities=12%  Similarity=0.105  Sum_probs=141.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHH
Q 009850           84 KDMAIVMKQQNRAEEAIEAIKSLRSRCSDQ----AQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKT  159 (524)
Q Consensus        84 ~~La~~~~~~g~~~eAi~~~~~al~~~p~~----~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~  159 (524)
                      ...|.+|...|++++|+.+|.+++.+.+..    ....++..+|.+|...|++++|+.+|++++.+....          
T Consensus        40 ~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~----------  109 (307)
T 2ifu_A           40 AKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVEN----------  109 (307)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTT----------
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHc----------
Confidence            344788999999999999999999987532    224677889999999999999999999999883110          


Q ss_pred             HHHHhHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc------HH-HHHHHHHHHHcCCHHHHHHH
Q 009850          160 ARSQGKKFQVSVEQ-EATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDN------NK-MCNLGICLMKQGRIGEAKET  231 (524)
Q Consensus       160 a~~~~~~~~~~~~p-~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~------~~-~~~Lg~~~~~~G~~~eA~~~  231 (524)
                                 .++ ....++.++|.+|.. |++++|+.+|++++.+.|..      .. +.++|.+|..+|++++|+.+
T Consensus       110 -----------g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~  177 (307)
T 2ifu_A          110 -----------GTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAAS  177 (307)
T ss_dssp             -----------TCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             -----------CCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence                       011 125688999999999 99999999999999987653      23 88999999999999999999


Q ss_pred             HHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCC
Q 009850          232 LRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  299 (524)
Q Consensus       232 ~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~  299 (524)
                      |++++...+....               .+....++.++|.++..+|++.+|+..|++++ .+|....
T Consensus       178 ~~~al~~~~~~~~---------------~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~  229 (307)
T 2ifu_A          178 LQKEKSMYKEMEN---------------YPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSG  229 (307)
T ss_dssp             HHHHHHHHHHTTC---------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTT
T ss_pred             HHHHHHHHHHcCC---------------hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCC
Confidence            9965432211110               01123478899999999999999999999999 9887654

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.62  E-value=1.8e-14  Score=154.21  Aligned_cols=188  Identities=7%  Similarity=-0.045  Sum_probs=169.2

Q ss_pred             HHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHH-hCCCcHHHHHHHHHHHHHH
Q 009850           63 EKAIPLFWAAINAGDRVDSALKDMAIVMKQ-------QNRAE-------EAIEAIKSLRS-RCSDQAQESLDNILLDLYK  127 (524)
Q Consensus        63 ~~Ai~~~~~al~~~p~~~~a~~~La~~~~~-------~g~~~-------eAi~~~~~al~-~~p~~~~~~l~~~lg~~~~  127 (524)
                      .+++..|++++..+|.++.+|+.+|..+..       .|+++       +|+..|++++. ..|++.  .++..++.++.
T Consensus       255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~--~l~~~~~~~~~  332 (530)
T 2ooe_A          255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNM--LLYFAYADYEE  332 (530)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCH--HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccH--HHHHHHHHHHH
Confidence            488899999999999999999999999987       79987       99999999997 799887  78899999999


Q ss_pred             HcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 009850          128 RCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEAT-RLLGNLGWALMQQNNYIEAEDAYRRALSIA  206 (524)
Q Consensus       128 ~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~-~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~  206 (524)
                      ..|++++|...|++++++                          .|.++ .+|..+|.++.+.|++++|+..|++|++..
T Consensus       333 ~~g~~~~A~~~~~~al~~--------------------------~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~  386 (530)
T 2ooe_A          333 SRMKYEKVHSIYNRLLAI--------------------------EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA  386 (530)
T ss_dssp             HTTCHHHHHHHHHHHHHS--------------------------SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred             hcCCHHHHHHHHHHHhCc--------------------------cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence            999999999999999988                          78875 699999999999999999999999999998


Q ss_pred             CCcHH-HHHHHHH-HHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 009850          207 PDNNK-MCNLGIC-LMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAF  284 (524)
Q Consensus       207 P~~~~-~~~Lg~~-~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi  284 (524)
                      |.... +...+.+ +...|++++|...|+                     ++++..|+++.+|..++..+...|+.++|+
T Consensus       387 ~~~~~~~~~~a~~~~~~~~~~~~A~~~~e---------------------~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar  445 (530)
T 2ooe_A          387 RTRHHVYVTAALMEYYCSKDKSVAFKIFE---------------------LGLKKYGDIPEYVLAYIDYLSHLNEDNNTR  445 (530)
T ss_dssp             TCCTHHHHHHHHHHHHHTCCHHHHHHHHH---------------------HHHHHHTTCHHHHHHHHHHHTTTTCHHHHH
T ss_pred             CCchHHHHHHHHHHHHHcCChhHHHHHHH---------------------HHHHHCCCCHHHHHHHHHHHHhCCCHhhHH
Confidence            87766 5555544 456899999999998                     778888999999999999999999999999


Q ss_pred             HHHhhcccCCCCCCC
Q 009850          285 LGSSSIWQPQPCKDH  299 (524)
Q Consensus       285 ~~~~~al~~~P~~~~  299 (524)
                      ..|++++...|.++.
T Consensus       446 ~~~~~al~~~~~~~~  460 (530)
T 2ooe_A          446 VLFERVLTSGSLPPE  460 (530)
T ss_dssp             HHHHHHHHSCCSCGG
T ss_pred             HHHHHHHhccCCCHH
Confidence            999999998876654

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.61  E-value=2.5e-15  Score=131.72  Aligned_cols=124  Identities=10%  Similarity=-0.014  Sum_probs=107.1

Q ss_pred             HHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Q 009850           67 PLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLI  146 (524)
Q Consensus        67 ~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~  146 (524)
                      ..|++++..+|++..+++.+|.++...|++++|+..|++++..+|+++  .++..+|.+|...|++++|+.+|++++.+ 
T Consensus         5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~-   81 (142)
T 2xcb_A            5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDA--RYFLGLGACRQSLGLYEQALQSYSYGALM-   81 (142)
T ss_dssp             ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred             hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccH--HHHHHHHHHHHHHhhHHHHHHHHHHHHhc-
Confidence            567788888999999999999999999999999999999999999887  67788999999999999999999999998 


Q ss_pred             hccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHH
Q 009850          147 QQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGIC  218 (524)
Q Consensus       147 ~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~  218 (524)
                                               +|+++.+++++|.++...|++++|+.+|++++.++|+++. +.....+
T Consensus        82 -------------------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~  129 (142)
T 2xcb_A           82 -------------------------DINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARA  129 (142)
T ss_dssp             -------------------------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred             -------------------------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence                                     8999999999999999999999999999999999998876 4333333

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.61  E-value=1.9e-14  Score=135.36  Aligned_cols=173  Identities=10%  Similarity=-0.054  Sum_probs=114.4

Q ss_pred             HHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcC----ChHHHHHHH
Q 009850           64 KAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCG----RLDDQIALL  139 (524)
Q Consensus        64 ~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g----~~~eA~~~~  139 (524)
                      +|+.+|+++.+.  .++.+++.+|.+|...+++++|+.+|+++.+..  ++  ..++.+|.+|.. +    ++++|+.+|
T Consensus         4 eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g--~~--~a~~~lg~~y~~-~g~~~~~~~A~~~~   76 (212)
T 3rjv_A            4 EPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG--DG--DALALLAQLKIR-NPQQADYPQARQLA   76 (212)
T ss_dssp             CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--CH--HHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred             hHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC--CH--HHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence            466667666654  566777777777777777777777777776642  33  455666666665 5    677777777


Q ss_pred             HHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCC--cHH-H
Q 009850          140 KHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQ----QNNYIEAEDAYRRALSIAPD--NNK-M  212 (524)
Q Consensus       140 ~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~----~g~~~eAi~~~~~Al~l~P~--~~~-~  212 (524)
                      +++.+                            ++++.++++||.+|..    .+++++|+.+|+++++..+.  ++. +
T Consensus        77 ~~A~~----------------------------~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~  128 (212)
T 3rjv_A           77 EKAVE----------------------------AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQ  128 (212)
T ss_dssp             HHHHH----------------------------TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHH
T ss_pred             HHHHH----------------------------CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHH
Confidence            77643                            4566677777777766    66777777777777776663  344 6


Q ss_pred             HHHHHHHHH----cCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-C-----CHHH
Q 009850          213 CNLGICLMK----QGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQ-S-----RLFD  282 (524)
Q Consensus       213 ~~Lg~~~~~----~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~-g-----~~~e  282 (524)
                      ++||.+|..    .+++++|+.+|+                     ++... +.++.+++++|.+|... |     ++++
T Consensus       129 ~~Lg~~y~~g~g~~~d~~~A~~~~~---------------------~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~  186 (212)
T 3rjv_A          129 MLLGLIYASGVHGPEDDVKASEYFK---------------------GSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQK  186 (212)
T ss_dssp             HHHHHHHHHTSSSSCCHHHHHHHHH---------------------HHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHH
T ss_pred             HHHHHHHHcCCCCCCCHHHHHHHHH---------------------HHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHH
Confidence            777777777    666777766666                     44444 44555677777777654 2     6777


Q ss_pred             HHHHHhhcccC
Q 009850          283 AFLGSSSIWQP  293 (524)
Q Consensus       283 Ai~~~~~al~~  293 (524)
                      |+..|+++.+.
T Consensus       187 A~~~~~~A~~~  197 (212)
T 3rjv_A          187 ALHWLNVSCLE  197 (212)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHc
Confidence            77777766654

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.61  E-value=7.6e-14  Score=139.59  Aligned_cols=206  Identities=9%  Similarity=-0.065  Sum_probs=173.9

Q ss_pred             HHcCChH-HHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 009850           57 LVDKDPE-KAIPLFWAAINAGDRVDSALKDMAIVMKQQNR----------AEEAIEAIKSLRSRCSDQAQESLDNILLDL  125 (524)
Q Consensus        57 ~~~g~~~-~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~----------~~eAi~~~~~al~~~p~~~~~~l~~~lg~~  125 (524)
                      ...|.+. +|+.++.+++..+|++..+|+..+.++..+|.          +++++.++..++..+|.+.  .+|+..+.+
T Consensus        40 ~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny--~aW~hR~wl  117 (331)
T 3dss_A           40 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSY--GTWHHRCWL  117 (331)
T ss_dssp             HHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCH--HHHHHHHHH
T ss_pred             HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCH--HHHHHHHHH
Confidence            4677776 89999999999999999999999999998876          7899999999999999997  788888999


Q ss_pred             HHHcCC--hHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHH
Q 009850          126 YKRCGR--LDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNN-YIEAEDAYRRA  202 (524)
Q Consensus       126 ~~~~g~--~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~-~~eAi~~~~~A  202 (524)
                      +...|+  +++++.++.++++.                          +|.+..+|...++++...|. ++++++++.++
T Consensus       118 L~~l~~~~~~~EL~~~~k~l~~--------------------------dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~  171 (331)
T 3dss_A          118 LSRLPEPNWARELELCARFLEA--------------------------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSL  171 (331)
T ss_dssp             HHHCSSCCHHHHHHHHHHHHHH--------------------------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HhccCcccHHHHHHHHHHHHHh--------------------------CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHH
Confidence            999994  89999999999999                          99999999999999999999 69999999999


Q ss_pred             HhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----
Q 009850          203 LSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQ----  277 (524)
Q Consensus       203 l~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~----  277 (524)
                      ++.+|.+.. |++++.++..++....+-       .......+.++++++.+.+++...|++..+|+.+..++...    
T Consensus       172 I~~~p~N~SAW~~R~~ll~~l~~~~~~~-------~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~  244 (331)
T 3dss_A          172 ITRNFSNYSSWHYRSCLLPQLHPQPDSG-------PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRC  244 (331)
T ss_dssp             HHHCSCCHHHHHHHHHHHHHHSCCC-------------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGG
T ss_pred             HHHCCCCHHHHHHHHHHHHHhhhccccc-------cccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcc
Confidence            999999999 999999998874321110       00001113345667777799999999999998666665555    


Q ss_pred             -------CCHHHHHHHHhhcccCCCCC
Q 009850          278 -------SRLFDAFLGSSSIWQPQPCK  297 (524)
Q Consensus       278 -------g~~~eAi~~~~~al~~~P~~  297 (524)
                             +.+++++..+..++..+|++
T Consensus       245 ~~~~~~~~~l~~el~~~~elle~~pd~  271 (331)
T 3dss_A          245 ELSVEKSTVLQSELESCKELQELEPEN  271 (331)
T ss_dssp             GCCHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             ccchHHHHHHHHHHHHHHHHHhhCccc
Confidence                   45799999999999999976

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.60  E-value=3.3e-14  Score=132.35  Aligned_cols=148  Identities=17%  Similarity=0.097  Sum_probs=124.1

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 009850           48 PYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYK  127 (524)
Q Consensus        48 ~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~  127 (524)
                      .++.+|..++..|++++|+..|++++  +| ++.+++.+|.++...|++++|+.+|++++..+|+++  .++..+|.+|.
T Consensus         8 ~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~lg~~~~   82 (213)
T 1hh8_A            8 SLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLA--VAYFQRGMLYY   82 (213)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch--HHHHHHHHHHH
Confidence            47899999999999999999999995  44 688999999999999999999999999999999987  78889999999


Q ss_pred             HcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 009850          128 RCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAP  207 (524)
Q Consensus       128 ~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P  207 (524)
                      ..|++++|+..|++++++.+.......          ........|....+++++|.++...|++++|+.+|+++++++|
T Consensus        83 ~~~~~~~A~~~~~~al~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p  152 (213)
T 1hh8_A           83 QTEKYDLAIKDLKEALIQLRGNQLIDY----------KILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS  152 (213)
T ss_dssp             HTTCHHHHHHHHHHHHHTTTTCSEEEC----------GGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred             HcccHHHHHHHHHHHHHhCCCccHHHH----------HHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence            999999999999999987322110000          0000011344569999999999999999999999999999999


Q ss_pred             CcH
Q 009850          208 DNN  210 (524)
Q Consensus       208 ~~~  210 (524)
                      ++.
T Consensus       153 ~~~  155 (213)
T 1hh8_A          153 EPR  155 (213)
T ss_dssp             SGG
T ss_pred             ccc
Confidence            873

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.60  E-value=1.8e-14  Score=147.44  Aligned_cols=170  Identities=9%  Similarity=-0.032  Sum_probs=143.6

Q ss_pred             ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----
Q 009850           45 GDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGD-------RVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQ----  113 (524)
Q Consensus        45 ~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p-------~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~----  113 (524)
                      ...+|+.+|.++...|++++|+.++.+++.+.+       ....++..+|.+|..+|++++|+.+|++++.+.+..    
T Consensus       142 ~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  221 (383)
T 3ulq_A          142 KAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQ  221 (383)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChH
Confidence            346899999999999999999999999999733       335689999999999999999999999999886522    


Q ss_pred             HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcC-CCcHHHHHHHHHHHHHcCCH
Q 009850          114 AQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVE-QEATRLLGNLGWALMQQNNY  192 (524)
Q Consensus       114 ~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~-p~~~~a~~~Lg~~~~~~g~~  192 (524)
                      ....++..+|.+|...|++++|+.+|++++.+...                     ..+ |..+.++.++|.++...|++
T Consensus       222 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~---------------------~~~~~~~~~~~~~l~~~~~~~g~~  280 (383)
T 3ulq_A          222 LMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEE---------------------SNILPSLPQAYFLITQIHYKLGKI  280 (383)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---------------------TTCGGGHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh---------------------hccchhHHHHHHHHHHHHHHCCCH
Confidence            22457789999999999999999999999986211                     114 67788999999999999999


Q ss_pred             HHHHHHHHHHHhhCC-----CcHH-HHHHHHHHHHcCC---HHHHHHHHHHh
Q 009850          193 IEAEDAYRRALSIAP-----DNNK-MCNLGICLMKQGR---IGEAKETLRRV  235 (524)
Q Consensus       193 ~eAi~~~~~Al~l~P-----~~~~-~~~Lg~~~~~~G~---~~eA~~~~~~a  235 (524)
                      ++|+.+|++++.+.+     .... +..+|.++...|+   +.+|+..+++.
T Consensus       281 ~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~  332 (383)
T 3ulq_A          281 DKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK  332 (383)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence            999999999999843     2233 6779999999999   88888888876

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.60  E-value=1.4e-14  Score=144.17  Aligned_cols=172  Identities=15%  Similarity=0.176  Sum_probs=141.1

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--cH--HHH
Q 009850           48 PYVRAKNVQLVDKDPEKAIPLFWAAINAGDR------VDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSD--QA--QES  117 (524)
Q Consensus        48 ~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~------~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~--~~--~~~  117 (524)
                      .|...|.++...|++++|+.+|.+++.+.+.      ...++..+|.+|..+|++++|+.+|++++.+.+.  +.  ...
T Consensus        38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~  117 (307)
T 2ifu_A           38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAM  117 (307)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            4667789999999999999999999987542      2567899999999999999999999999998642  22  246


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 009850          118 LDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAED  197 (524)
Q Consensus       118 l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~  197 (524)
                      ++..+|.+|.. |++++|+.+|++++.+.+..-                    .......++.++|.+|..+|+|++|+.
T Consensus       118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~--------------------~~~~~~~~~~~lg~~~~~~g~~~~A~~  176 (307)
T 2ifu_A          118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEE--------------------RLRQAAELIGKASRLLVRQQKFDEAAA  176 (307)
T ss_dssp             HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTT--------------------CHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCC--------------------ChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            77889999988 999999999999998832100                    001125689999999999999999999


Q ss_pred             HHHHHHhhCCCc------HH-HHHHHHHHHHcCCHHHHHHHHHHhcccccC
Q 009850          198 AYRRALSIAPDN------NK-MCNLGICLMKQGRIGEAKETLRRVKPAVAD  241 (524)
Q Consensus       198 ~~~~Al~l~P~~------~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~  241 (524)
                      +|++++.+.|++      .. +.++|.++..+|++++|+.+|++++ ..|.
T Consensus       177 ~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~  226 (307)
T 2ifu_A          177 SLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPG  226 (307)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTT
T ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCC
Confidence            999999986543      22 7789999999999999999999766 4443

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.59  E-value=7.6e-14  Score=118.32  Aligned_cols=130  Identities=27%  Similarity=0.302  Sum_probs=121.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHH
Q 009850           81 SALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTA  160 (524)
Q Consensus        81 ~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a  160 (524)
                      .+++.+|.++...|++++|+..+++++...|.+.  ..+..++.++...|++++|+..|++++..               
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---------------   64 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA--EAWYNLGNAYYKQGDYDEAIEYYQKALEL---------------   64 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHH---------------
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcch--hHHHHHHHHHHHhcCHHHHHHHHHHHHHH---------------
Confidence            5688999999999999999999999999999886  67788999999999999999999999988               


Q ss_pred             HHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhccc
Q 009850          161 RSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPA  238 (524)
Q Consensus       161 ~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~  238 (524)
                                 .|.+..+++.+|.++...|++++|+..|++++...|.+.. ++.+|.++...|++++|+..|+++...
T Consensus        65 -----------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  132 (136)
T 2fo7_A           65 -----------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL  132 (136)
T ss_dssp             -----------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             -----------CCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence                       8889999999999999999999999999999999999988 999999999999999999999965443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.59  E-value=5.5e-15  Score=159.61  Aligned_cols=206  Identities=9%  Similarity=-0.111  Sum_probs=176.8

Q ss_pred             HHcCCh-HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 009850           57 LVDKDP-EKAIPLFWAAINAGDRVDSALKDMAIVMKQQNR----------AEEAIEAIKSLRSRCSDQAQESLDNILLDL  125 (524)
Q Consensus        57 ~~~g~~-~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~----------~~eAi~~~~~al~~~p~~~~~~l~~~lg~~  125 (524)
                      ...|++ ++|+..+.+++..+|++..+|+.++.++..+|+          +++++..+.+++..+|++.  .+|+..+.+
T Consensus        39 ~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y--~aW~hR~w~  116 (567)
T 1dce_A           39 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSY--GTWHHRCWL  116 (567)
T ss_dssp             HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCH--HHHHHHHHH
T ss_pred             HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCH--HHHHHHHHH
Confidence            455555 688999999999999999999999999999998          9999999999999999997  788888999


Q ss_pred             HHHcC--ChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHH
Q 009850          126 YKRCG--RLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQN-NYIEAEDAYRRA  202 (524)
Q Consensus       126 ~~~~g--~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g-~~~eAi~~~~~A  202 (524)
                      +...|  ++++++.++.+++++                          +|.+..+|...|+++...| .++++++++.++
T Consensus       117 l~~l~~~~~~~el~~~~k~l~~--------------------------d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~  170 (567)
T 1dce_A          117 LSRLPEPNWARELELCARFLEA--------------------------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSL  170 (567)
T ss_dssp             HHTCSSCCHHHHHHHHHHHHHH--------------------------CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTT
T ss_pred             HHHcccccHHHHHHHHHHHHhh--------------------------ccccccHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence            99999  679999999999999                          9999999999999999999 999999999999


Q ss_pred             HhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 009850          203 LSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLF  281 (524)
Q Consensus       203 l~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~  281 (524)
                      ++.+|.+.. |++++.++..+++..++.       .......+.++++++.+.+++..+|++..+|+.++.++...++++
T Consensus       171 I~~~p~n~saW~~r~~ll~~l~~~~~~~-------~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~  243 (567)
T 1dce_A          171 ITRNFSNYSSWHYRSCLLPQLHPQPDSG-------PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHD  243 (567)
T ss_dssp             TTTTCCCHHHHHHHHHHHHHHSCCCCSS-------SCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCS
T ss_pred             HHHCCCCccHHHHHHHHHHhhccccccc-------ccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCcc
Confidence            999999999 999999998874431110       000001133456677777999999999999999999999999877


Q ss_pred             H------------HHHHHhhcccCCCCC
Q 009850          282 D------------AFLGSSSIWQPQPCK  297 (524)
Q Consensus       282 e------------Ai~~~~~al~~~P~~  297 (524)
                      +            |+.+|.+++..+|..
T Consensus       244 ~~~~~~~~~~~~~~~~~f~~~i~~~~~~  271 (567)
T 1dce_A          244 VLCCVHVSREEACLSVCFSRPLTVGSRM  271 (567)
T ss_dssp             CEEEEEEETTTTEEEEEEEEEECTTBTT
T ss_pred             ceeeeeeccCCceEEEEeccceeccccc
Confidence            6            666788888888764

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.58  E-value=9e-14  Score=123.39  Aligned_cols=96  Identities=10%  Similarity=-0.033  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 009850           48 PYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYK  127 (524)
Q Consensus        48 ~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~  127 (524)
                      .|+.+|..++..|++++|+..|.+++..+|++..++..+|.++...|++++|+..+++++..+|.++  .++..+|.++.
T Consensus        15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~a~~~~   92 (166)
T 1a17_A           15 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI--KGYYRRAASNM   92 (166)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH--HHHHHHHHHHH
Confidence            4555566666666666666666666666665555555666666666666666666655555555554  44455555555


Q ss_pred             HcCChHHHHHHHHHHHHH
Q 009850          128 RCGRLDDQIALLKHKLYL  145 (524)
Q Consensus       128 ~~g~~~eA~~~~~~al~l  145 (524)
                      ..|++++|+.+|++++.+
T Consensus        93 ~~~~~~~A~~~~~~a~~~  110 (166)
T 1a17_A           93 ALGKFRAALRDYETVVKV  110 (166)
T ss_dssp             HTTCHHHHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHh
Confidence            555555555555555555

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.57  E-value=4.5e-13  Score=133.97  Aligned_cols=224  Identities=8%  Similarity=-0.028  Sum_probs=181.9

Q ss_pred             HHHhcCCCChHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCC--HHHHHHHHH
Q 009850           37 HAIHKVPVGDTPYVRAKNVQLVDKD----------PEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNR--AEEAIEAIK  104 (524)
Q Consensus        37 ~~~~~~p~~~~~~~~lg~~~~~~g~----------~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~--~~eAi~~~~  104 (524)
                      .++...|....+|+..+.+....|+          +++++.++..++..+|.+..+|+..+.++..+|+  +++++.++.
T Consensus        55 ~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~  134 (331)
T 3dss_A           55 QILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCA  134 (331)
T ss_dssp             HHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHH
T ss_pred             HHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHH
Confidence            4667789999999999999887776          7899999999999999999999999999999994  999999999


Q ss_pred             HHHHhCCCcHHHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHH
Q 009850          105 SLRSRCSDQAQESLDNILLDLYKRCGR-LDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLG  183 (524)
Q Consensus       105 ~al~~~p~~~~~~l~~~lg~~~~~~g~-~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg  183 (524)
                      +++..+|.+.  .+|...+.++...|. ++++++++.++++.                          +|.+..+|+.++
T Consensus       135 k~l~~dprNy--~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--------------------------~p~N~SAW~~R~  186 (331)
T 3dss_A          135 RFLEADERNF--HCWDYRRFVAAQAAVAPAEELAFTDSLITR--------------------------NFSNYSSWHYRS  186 (331)
T ss_dssp             HHHHHCTTCH--HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--------------------------CSCCHHHHHHHH
T ss_pred             HHHHhCCCCH--HHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--------------------------CCCCHHHHHHHH
Confidence            9999999997  677888888889998 59999999999999                          999999999999


Q ss_pred             HHHHHc--------------CCHHHHHHHHHHHHhhCCCcHH-HHH-HHHHHHHcCCHHHHHHHHHHhcccccCCCcCHH
Q 009850          184 WALMQQ--------------NNYIEAEDAYRRALSIAPDNNK-MCN-LGICLMKQGRIGEAKETLRRVKPAVADGPRGVD  247 (524)
Q Consensus       184 ~~~~~~--------------g~~~eAi~~~~~Al~l~P~~~~-~~~-Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~  247 (524)
                      .++...              +.++++++++.+++..+|++.. |+. .+.+....|...-....           .+.++
T Consensus       187 ~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~-----------~~~l~  255 (331)
T 3dss_A          187 CLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEK-----------STVLQ  255 (331)
T ss_dssp             HHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHH-----------HHHHH
T ss_pred             HHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHH-----------HHHHH
Confidence            999987              5699999999999999999999 754 45444444421100000           02345


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHH---HcCCHHHHHHHHhhcccCCCCCCC
Q 009850          248 SHLKAYERAQQMLKDLESEMMNKGGDRV---EQSRLFDAFLGSSSIWQPQPCKDH  299 (524)
Q Consensus       248 ~A~~~~~~al~~~p~~~~a~~~lg~~~~---~~g~~~eAi~~~~~al~~~P~~~~  299 (524)
                      ++++.+.+++++.|++...+..++.+..   ..|..++....+.++.+++|....
T Consensus       256 ~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~  310 (331)
T 3dss_A          256 SELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA  310 (331)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHH
T ss_pred             HHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhh
Confidence            6677777999999998655544443322   357778888899999999886544

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.57  E-value=1.3e-14  Score=128.47  Aligned_cols=115  Identities=18%  Similarity=0.184  Sum_probs=104.8

Q ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHH
Q 009850           99 AIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRL  178 (524)
Q Consensus        99 Ai~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a  178 (524)
                      +-..|++++.++|++.  ..++.+|.++...|++++|+..|++++.+                          +|+++.+
T Consensus         6 ~~~~~~~al~~~p~~~--~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------------------------~p~~~~~   57 (148)
T 2vgx_A            6 GGGTIAMLNEISSDTL--EQLYSLAFNQYQSGXYEDAHXVFQALCVL--------------------------DHYDSRF   57 (148)
T ss_dssp             CCCSHHHHTTCCHHHH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------------CTTCHHH
T ss_pred             hhhhHHHHHcCCHhhH--HHHHHHHHHHHHcCChHHHHHHHHHHHHc--------------------------CcccHHH
Confidence            3456888999999886  67788999999999999999999999999                          9999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccC
Q 009850          179 LGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVAD  241 (524)
Q Consensus       179 ~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~  241 (524)
                      |+++|.++...|++++|+.+|++++.++|+++. ++++|.++..+|++++|+.+|++++...|+
T Consensus        58 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  121 (148)
T 2vgx_A           58 FLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIAN  121 (148)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence            999999999999999999999999999999999 999999999999999999999965444443

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.57  E-value=7.2e-14  Score=119.14  Aligned_cols=97  Identities=8%  Similarity=-0.057  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 009850           47 TPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLY  126 (524)
Q Consensus        47 ~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~  126 (524)
                      ..|+.+|..++..|++++|+..|++++..+|+++.++..+|.++..+|++++|+..|++++.++|+++  ..+..+|.++
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~   82 (126)
T 3upv_A            5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFV--RAYIRKATAQ   82 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH--HHHHHHHHHH
Confidence            34555555555555555555555555555555555555555555555555555555555555555544  3444555555


Q ss_pred             HHcCChHHHHHHHHHHHHH
Q 009850          127 KRCGRLDDQIALLKHKLYL  145 (524)
Q Consensus       127 ~~~g~~~eA~~~~~~al~l  145 (524)
                      ...|++++|+..|++++++
T Consensus        83 ~~~~~~~~A~~~~~~al~~  101 (126)
T 3upv_A           83 IAVKEYASALETLDAARTK  101 (126)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHHhCHHHHHHHHHHHHHh
Confidence            5555555555555555554

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.57  E-value=2.2e-13  Score=128.01  Aligned_cols=158  Identities=14%  Similarity=0.045  Sum_probs=139.6

Q ss_pred             CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhCCCcHHHHHH
Q 009850           44 VGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQN----RAEEAIEAIKSLRSRCSDQAQESLD  119 (524)
Q Consensus        44 ~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g----~~~eAi~~~~~al~~~p~~~~~~l~  119 (524)
                      ..+.+++.+|.++...+++++|+.+|+++++.  +++.+++.||.+|.. +    ++++|+.+|+++...  .++  ...
T Consensus        16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~--g~~--~a~   88 (212)
T 3rjv_A           16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA--GSK--SGE   88 (212)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT--TCH--HHH
T ss_pred             CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC--CCH--HHH
Confidence            57789999999999999999999999999875  678999999999998 7    999999999999664  454  567


Q ss_pred             HHHHHHHHH----cCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCC--CcHHHHHHHHHHHHH----c
Q 009850          120 NILLDLYKR----CGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQ--EATRLLGNLGWALMQ----Q  189 (524)
Q Consensus       120 ~~lg~~~~~----~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p--~~~~a~~~Lg~~~~~----~  189 (524)
                      +.+|.+|..    .+++++|+.+|+++++.                          .+  +++.++++||.+|..    .
T Consensus        89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--------------------------~~~~~~~~a~~~Lg~~y~~g~g~~  142 (212)
T 3rjv_A           89 IVLARVLVNRQAGATDVAHAITLLQDAARD--------------------------SESDAAVDAQMLLGLIYASGVHGP  142 (212)
T ss_dssp             HHHHHHHTCGGGSSCCHHHHHHHHHHHTSS--------------------------TTSHHHHHHHHHHHHHHHHTSSSS
T ss_pred             HHHHHHHHcCCCCccCHHHHHHHHHHHHHc--------------------------CCCcchHHHHHHHHHHHHcCCCCC
Confidence            889999987    88999999999999877                          44  348999999999999    8


Q ss_pred             CCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHc-C-----CHHHHHHHHHHh
Q 009850          190 NNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQ-G-----RIGEAKETLRRV  235 (524)
Q Consensus       190 g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~-G-----~~~eA~~~~~~a  235 (524)
                      +++++|+.+|+++++. |.++. +++||.+|... |     ++++|+.+|+++
T Consensus       143 ~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A  194 (212)
T 3rjv_A          143 EDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVS  194 (212)
T ss_dssp             CCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Confidence            8999999999999998 55556 99999999875 3     899999999965

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.56  E-value=8e-14  Score=118.87  Aligned_cols=87  Identities=16%  Similarity=0.113  Sum_probs=65.8

Q ss_pred             HHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------C
Q 009850           38 AIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRC------S  111 (524)
Q Consensus        38 ~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~------p  111 (524)
                      ++...|....+|+.+|.++...|++++|+..|++++.++|++..+++.+|.++..+|++++|+..|++++.++      |
T Consensus        30 al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p  109 (126)
T 3upv_A           30 MIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGS  109 (126)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCch
Confidence            4455677777888888888888888888888888888888888888888888888888888888888888887      5


Q ss_pred             CcHHHHHHHHHHHHH
Q 009850          112 DQAQESLDNILLDLY  126 (524)
Q Consensus       112 ~~~~~~l~~~lg~~~  126 (524)
                      .+.  .+...+..+.
T Consensus       110 ~~~--~~~~~l~~~~  122 (126)
T 3upv_A          110 SAR--EIDQLYYKAS  122 (126)
T ss_dssp             THH--HHHHHHHHHH
T ss_pred             hHH--HHHHHHHHHH
Confidence            554  5555555443

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.56  E-value=3.6e-14  Score=128.54  Aligned_cols=127  Identities=16%  Similarity=0.189  Sum_probs=115.7

Q ss_pred             HHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HHHcCCh--H
Q 009850           57 LVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDL-YKRCGRL--D  133 (524)
Q Consensus        57 ~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~-~~~~g~~--~  133 (524)
                      ...|++++|+..|++++..+|++..+++.+|.++...|++++|+.+|++++..+|+++  .++..+|.+ +...|++  +
T Consensus        21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~la~~l~~~~~~~~~~   98 (177)
T 2e2e_A           21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENA--ELYAALATVLYYQASQHMTA   98 (177)
T ss_dssp             C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCH--HHHHHHHHHHHHHTTTCCCH
T ss_pred             hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH--HHHHHHHHHHHHhcCCcchH
Confidence            5678999999999999999999999999999999999999999999999999999987  677888999 8899999  9


Q ss_pred             HHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q 009850          134 DQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK  211 (524)
Q Consensus       134 eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~  211 (524)
                      +|+..|++++..                          +|++..+++++|.++...|++++|+.+|++++.++|++..
T Consensus        99 ~A~~~~~~al~~--------------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  150 (177)
T 2e2e_A           99 QTRAMIDKALAL--------------------------DSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN  150 (177)
T ss_dssp             HHHHHHHHHHHH--------------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred             HHHHHHHHHHHh--------------------------CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence            999999999998                          8999999999999999999999999999999999998855

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.56  E-value=2.9e-13  Score=133.41  Aligned_cols=167  Identities=15%  Similarity=0.170  Sum_probs=139.9

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----HHH
Q 009850           47 TPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVD------SALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQ----AQE  116 (524)
Q Consensus        47 ~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~------~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~----~~~  116 (524)
                      ..+...+..++..|++++|+..+.++++..+...      ..++.+|.++...|++++|+.+|++++...+..    ...
T Consensus        76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  155 (293)
T 2qfc_A           76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL  155 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence            4566788899999999999999999999877654      346678999999999999999999999876532    224


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCc----HHHHHHHHHHHHHcCCH
Q 009850          117 SLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEA----TRLLGNLGWALMQQNNY  192 (524)
Q Consensus       117 ~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~----~~a~~~Lg~~~~~~g~~  192 (524)
                      .+++.+|.+|...|++++|+.+|++++.+..                       ..|++    ..+++++|.+|..+|+|
T Consensus       156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~-----------------------~~~~~~~~~~~~~~nlg~~y~~~~~y  212 (293)
T 2qfc_A          156 YIENAIANIYAENGYLKKGIDLFEQILKQLE-----------------------ALHDNEEFDVKVRYNHAKALYLDSRY  212 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----------------------HSCCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-----------------------hcCccccchHHHHHhHHHHHHHHhhH
Confidence            6888999999999999999999999997621                       13442    36899999999999999


Q ss_pred             HHHHHHHHHHHhhCCCc------HH-HHHHHHHHHHcCCHHHH-HHHHHHhc
Q 009850          193 IEAEDAYRRALSIAPDN------NK-MCNLGICLMKQGRIGEA-KETLRRVK  236 (524)
Q Consensus       193 ~eAi~~~~~Al~l~P~~------~~-~~~Lg~~~~~~G~~~eA-~~~~~~a~  236 (524)
                      ++|+.+|++++.+.++.      .. ++++|.+|..+|++++| ..+|++++
T Consensus       213 ~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al  264 (293)
T 2qfc_A          213 EESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence            99999999999876431      34 89999999999999999 77788753

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.55  E-value=1.9e-13  Score=121.21  Aligned_cols=129  Identities=13%  Similarity=0.013  Sum_probs=119.1

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHH
Q 009850           79 VDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTK  158 (524)
Q Consensus        79 ~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~  158 (524)
                      .+..+..+|.++...|++++|+..|++++..+|.+.  .++..+|.++...|++++|+..|++++.+             
T Consensus        12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-------------   76 (166)
T 1a17_A           12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNA--IYYGNRSLAYLRTECYGYALGDATRAIEL-------------   76 (166)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------------
Confidence            357789999999999999999999999999999987  77889999999999999999999999998             


Q ss_pred             HHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HH--HHHHHHHHcCCHHHHHHHHHHh
Q 009850          159 TARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MC--NLGICLMKQGRIGEAKETLRRV  235 (524)
Q Consensus       159 ~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~--~Lg~~~~~~G~~~eA~~~~~~a  235 (524)
                                   +|.++.+++++|.++...|++++|+.+|++++.++|++.. +.  .++..+...|++++|+..+.++
T Consensus        77 -------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  143 (166)
T 1a17_A           77 -------------DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK  143 (166)
T ss_dssp             -------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -------------CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence                         8999999999999999999999999999999999999988 64  4555588999999999999965

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.55  E-value=8.9e-15  Score=143.87  Aligned_cols=185  Identities=14%  Similarity=0.058  Sum_probs=146.0

Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhccc
Q 009850           77 DRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKR  156 (524)
Q Consensus        77 p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~  156 (524)
                      |.++.+++.+|.++...|++++|+..|++++..+|+++  .++..+|.+|...|++++|+..|++++++           
T Consensus         1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~~~~~~A~~~~~~al~~-----------   67 (281)
T 2c2l_A            1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVA--VYYTNRALCYLKMQQPEQALADCRRALEL-----------   67 (281)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH--HHHHHHHHHHHHTTCHHHHHHHHHHHTTS-----------
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccH--HHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----------
Confidence            56788999999999999999999999999999999987  78889999999999999999999999988           


Q ss_pred             HHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH----HHHHHHHHHHcCCHHHHHHHH
Q 009850          157 TKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK----MCNLGICLMKQGRIGEAKETL  232 (524)
Q Consensus       157 ~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~----~~~Lg~~~~~~G~~~eA~~~~  232 (524)
                                     +|++..+++++|.+|...|++++|+..|+++++++|++..    .........+...+..     
T Consensus        68 ---------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~-----  127 (281)
T 2c2l_A           68 ---------------DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNS-----  127 (281)
T ss_dssp             ---------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHH-----
T ss_pred             ---------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHH-----
Confidence                           8999999999999999999999999999999999997643    1112212222111111     


Q ss_pred             HHhcccccCC-----------CcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHhhcccCCC
Q 009850          233 RRVKPAVADG-----------PRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQ-SRLFDAFLGSSSIWQPQP  295 (524)
Q Consensus       233 ~~a~~~~~~~-----------~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~-g~~~eAi~~~~~al~~~P  295 (524)
                       ......+..           .++.++|++.++++++..|++......++..+... +.+++|...|.++....+
T Consensus       128 -~~~~~~~~~~~i~~~l~~l~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~~  201 (281)
T 2c2l_A          128 -IEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKRK  201 (281)
T ss_dssp             -HHHTCCCCCCHHHHHHHHHHHHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTTS
T ss_pred             -HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence             111111111           14566777778888888898888888887777766 778889999988876543

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.55  E-value=1.4e-14  Score=134.22  Aligned_cols=154  Identities=16%  Similarity=0.081  Sum_probs=122.7

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH--------------H
Q 009850           50 VRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQA--------------Q  115 (524)
Q Consensus        50 ~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~--------------~  115 (524)
                      ...+......|++++|.+.+.......+.....+..+|.++...|++++|+..|++++...|.++              .
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~   87 (198)
T 2fbn_A            8 HHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIE   87 (198)
T ss_dssp             --------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHH
T ss_pred             cchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHH
Confidence            34445556677777777777766666666777888888888888888888888888888877654              1


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Q 009850          116 ESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEA  195 (524)
Q Consensus       116 ~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eA  195 (524)
                      ..++..+|.+|...|++++|+.++++++.+                          +|+++.+++.+|.++...|++++|
T Consensus        88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------------------------~p~~~~~~~~lg~~~~~~~~~~~A  141 (198)
T 2fbn_A           88 ISCNLNLATCYNKNKDYPKAIDHASKVLKI--------------------------DKNNVKALYKLGVANMYFGFLEEA  141 (198)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------------STTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------------------------CcccHHHHHHHHHHHHHcccHHHH
Confidence            267788999999999999999999999998                          899999999999999999999999


Q ss_pred             HHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHH
Q 009850          196 EDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAK  229 (524)
Q Consensus       196 i~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~  229 (524)
                      +.+|+++++++|++.. +..++.++..+|+..++.
T Consensus       142 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~  176 (198)
T 2fbn_A          142 KENLYKAASLNPNNLDIRNSYELCVNKLKEARKKD  176 (198)
T ss_dssp             HHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998 999999999999888877

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.54  E-value=2.5e-13  Score=126.38  Aligned_cols=125  Identities=13%  Similarity=0.135  Sum_probs=114.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHH
Q 009850           80 DSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKT  159 (524)
Q Consensus        80 ~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~  159 (524)
                      ...++.+|.++...|++++|+..|++++  +| ++  .++..+|.+|...|++++|+..|++++.+              
T Consensus         6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------------   66 (213)
T 1hh8_A            6 AISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HS--RICFNIGCMYTILKNMTEAEKAFTRSINR--------------   66 (213)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-Ch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------
Confidence            3457899999999999999999999985  34 44  68899999999999999999999999998              


Q ss_pred             HHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH----------------H-HHHHHHHHHHc
Q 009850          160 ARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNN----------------K-MCNLGICLMKQ  222 (524)
Q Consensus       160 a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~----------------~-~~~Lg~~~~~~  222 (524)
                                  +|+++.+++++|.++...|++++|+.+|++++++.|++.                . ++++|.++..+
T Consensus        67 ------------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  134 (213)
T 1hh8_A           67 ------------DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKK  134 (213)
T ss_dssp             ------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHT
T ss_pred             ------------CccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHc
Confidence                        899999999999999999999999999999999888765                6 99999999999


Q ss_pred             CCHHHHHHHHHHh
Q 009850          223 GRIGEAKETLRRV  235 (524)
Q Consensus       223 G~~~eA~~~~~~a  235 (524)
                      |++++|+.+|+++
T Consensus       135 g~~~~A~~~~~~a  147 (213)
T 1hh8_A          135 EEWKKAEEQLALA  147 (213)
T ss_dssp             TCHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHH
Confidence            9999999999943

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.54  E-value=1.2e-13  Score=117.51  Aligned_cols=102  Identities=10%  Similarity=-0.040  Sum_probs=64.0

Q ss_pred             CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 009850           42 VPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNI  121 (524)
Q Consensus        42 ~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~  121 (524)
                      .+....+|+.+|..++..|++++|+..|++++..+|++..++..+|.++...|++++|+.++++++..+|++.  .++..
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~   89 (133)
T 2lni_A           12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFI--KGYTR   89 (133)
T ss_dssp             SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCH--HHHHH
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCch--HHHHH
Confidence            3445556666666666666666666666666666666666666666666666666666666666666666554  45555


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHH
Q 009850          122 LLDLYKRCGRLDDQIALLKHKLYL  145 (524)
Q Consensus       122 lg~~~~~~g~~~eA~~~~~~al~l  145 (524)
                      +|.++...|++++|+.+|++++..
T Consensus        90 la~~~~~~~~~~~A~~~~~~~~~~  113 (133)
T 2lni_A           90 KAAALEAMKDYTKAMDVYQKALDL  113 (133)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHh
Confidence            666666666666666666666655

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.54  E-value=1.7e-13  Score=139.93  Aligned_cols=170  Identities=11%  Similarity=0.051  Sum_probs=141.6

Q ss_pred             ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--c--
Q 009850           45 GDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGD-------RVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSD--Q--  113 (524)
Q Consensus        45 ~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p-------~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~--~--  113 (524)
                      ....++.+|.++...|++++|+.++.+++...+       ....++..+|.+|..+|++++|+.+|++++.+.+.  +  
T Consensus       140 ~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~  219 (378)
T 3q15_A          140 KAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDR  219 (378)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHH
Confidence            345789999999999999999999999998633       23567889999999999999999999999987541  1  


Q ss_pred             HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Q 009850          114 AQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYI  193 (524)
Q Consensus       114 ~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~  193 (524)
                      ....++..+|.+|...|++++|+.+|++++.+..                     ...+|..+.+++++|.++...|+++
T Consensus       220 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~---------------------~~~~~~~~~~~~~la~~~~~~g~~~  278 (378)
T 3q15_A          220 FIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSR---------------------EKVPDLLPKVLFGLSWTLCKAGQTQ  278 (378)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH---------------------HHCGGGHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH---------------------hhCChhHHHHHHHHHHHHHHCCCHH
Confidence            2246788999999999999999999999998621                     1125777889999999999999999


Q ss_pred             HHHHHHHHHHhhCCC-----cHH-HHHHHHHHHHcCC---HHHHHHHHHHh
Q 009850          194 EAEDAYRRALSIAPD-----NNK-MCNLGICLMKQGR---IGEAKETLRRV  235 (524)
Q Consensus       194 eAi~~~~~Al~l~P~-----~~~-~~~Lg~~~~~~G~---~~eA~~~~~~a  235 (524)
                      +|+.++++++.+.+.     ... +..++.++...|+   +.+|+..+++.
T Consensus       279 ~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~  329 (378)
T 3q15_A          279 KAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK  329 (378)
T ss_dssp             HHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC
Confidence            999999999998543     333 6678888888888   88888888763

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.54  E-value=3.1e-14  Score=124.66  Aligned_cols=113  Identities=16%  Similarity=0.173  Sum_probs=100.3

Q ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHH
Q 009850          101 EAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLG  180 (524)
Q Consensus       101 ~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~  180 (524)
                      ..|++++..+|++.  ..++.+|..+...|++++|+..|++++..                          +|+++.+|+
T Consensus         5 ~~l~~al~~~p~~~--~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------------------------~p~~~~~~~   56 (142)
T 2xcb_A            5 GTLAMLRGLSEDTL--EQLYALGFNQYQAGKWDDAQKIFQALCML--------------------------DHYDARYFL   56 (142)
T ss_dssp             ----CCTTCCHHHH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------------CTTCHHHHH
T ss_pred             hhHHHHHcCCHHHH--HHHHHHHHHHHHHccHHHHHHHHHHHHHh--------------------------CCccHHHHH
Confidence            46777888888776  67788999999999999999999999999                          999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccC
Q 009850          181 NLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVAD  241 (524)
Q Consensus       181 ~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~  241 (524)
                      .+|.++...|++++|+.+|++++.++|+++. ++++|.++..+|++++|+.+|++++...|.
T Consensus        57 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  118 (142)
T 2xcb_A           57 GLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAA  118 (142)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            9999999999999999999999999999999 999999999999999999999965444443

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.53  E-value=1.4e-13  Score=116.40  Aligned_cols=121  Identities=20%  Similarity=0.221  Sum_probs=77.8

Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhccc
Q 009850           77 DRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKR  156 (524)
Q Consensus        77 p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~  156 (524)
                      |.+...+..+|.++...|++++|+..|++++...|++.  .++..+|.++...|++++|+.++++++..           
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----------   75 (131)
T 2vyi_A            9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANA--VYFCNRAAAYSKLGNYAGAVQDCERAICI-----------   75 (131)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------
T ss_pred             hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCH--HHHHHHHHHHHHhhchHHHHHHHHHHHhc-----------
Confidence            34455666666666666666666666666666666654  45556666666666666666666666665           


Q ss_pred             HHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCH
Q 009850          157 TKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRI  225 (524)
Q Consensus       157 ~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~  225 (524)
                                     +|+++.+++.+|.++...|++++|+.+|++++.++|++.. +..+|.++..+|++
T Consensus        76 ---------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           76 ---------------DPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             ---------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred             ---------------CccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence                           5666666666666666666666666666666666666666 66666666666553

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.53  E-value=1.1e-13  Score=123.86  Aligned_cols=117  Identities=13%  Similarity=0.143  Sum_probs=94.7

Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcc
Q 009850           76 GDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGK  155 (524)
Q Consensus        76 ~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~  155 (524)
                      ++.++..++.+|.++...|++++|+.+|++++.++|+++  .++..+|.+|...|++++|+.+|++++++          
T Consensus         7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~al~~----------   74 (164)
T 3sz7_A            7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANP--IYLSNRAAAYSASGQHEKAAEDAELATVV----------   74 (164)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------
T ss_pred             hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCH--HHHHHHHHHHHHccCHHHHHHHHHHHHHh----------
Confidence            345667788888888888888888888888888888876  67778888888888888888888888888          


Q ss_pred             cHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHH
Q 009850          156 RTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLM  220 (524)
Q Consensus       156 ~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~  220 (524)
                                      +|+++.+|+++|.+|...|++++|+.+|+++++++|++.. |+.++.+..
T Consensus        75 ----------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~  124 (164)
T 3sz7_A           75 ----------------DPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETT  124 (164)
T ss_dssp             ----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred             ----------------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence                            7888888888888888888888888888888888888876 666655443

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.53  E-value=3.2e-13  Score=141.96  Aligned_cols=211  Identities=11%  Similarity=0.016  Sum_probs=121.9

Q ss_pred             hHHHHHHHHHHHHcCChHHHHHH----HHHHHHcCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCcHHHHH
Q 009850           46 DTPYVRAKNVQLVDKDPEKAIPL----FWAAINAGDRVDSALKDMAIVMKQQN---RAEEAIEAIKSLRSRCSDQAQESL  118 (524)
Q Consensus        46 ~~~~~~lg~~~~~~g~~~~Ai~~----~~~al~~~p~~~~a~~~La~~~~~~g---~~~eAi~~~~~al~~~p~~~~~~l  118 (524)
                      +.+++.+|.++...+.+++++..    ++.+...+|   .+++.||.+|...|   ++++|+.+|+++....+..+  ..
T Consensus       141 ~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~---~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a--~~  215 (452)
T 3e4b_A          141 PEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTD---ICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTA--QR  215 (452)
T ss_dssp             TTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCT---THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCH--HH
T ss_pred             HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCH---HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHH--HH
Confidence            45567777777776644444433    333333333   36777777777777   67777777777777766665  34


Q ss_pred             HHHHHHHHHHc----CChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHH-H--HHcCC
Q 009850          119 DNILLDLYKRC----GRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWA-L--MQQNN  191 (524)
Q Consensus       119 ~~~lg~~~~~~----g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~-~--~~~g~  191 (524)
                      ++.+|.+|...    +++++|+.+|+++. .                            +++.++++||.+ +  ...++
T Consensus       216 ~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~----------------------------g~~~a~~~Lg~~~~~~~~~~d  266 (452)
T 3e4b_A          216 VDSVARVLGDATLGTPDEKTAQALLEKIA-P----------------------------GYPASWVSLAQLLYDFPELGD  266 (452)
T ss_dssp             HHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G----------------------------GSTHHHHHHHHHHHHSGGGCC
T ss_pred             HHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C----------------------------CCHHHHHHHHHHHHhCCCCCC
Confidence            45566666444    56777777777654 2                            344555666655 2  34556


Q ss_pred             HHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcC-----CHHHHHHHHHHhcccccCC--------------CcCHHHHHH
Q 009850          192 YIEAEDAYRRALSIAPDNNK-MCNLGICLMKQG-----RIGEAKETLRRVKPAVADG--------------PRGVDSHLK  251 (524)
Q Consensus       192 ~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G-----~~~eA~~~~~~a~~~~~~~--------------~~~~~~A~~  251 (524)
                      +++|+.+|+++.+..  ++. +++||.+|. .|     ++++|+.+|+++.+.++..              ..+.++|+.
T Consensus       267 ~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~  343 (452)
T 3e4b_A          267 VEQMMKYLDNGRAAD--QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAVGREVAADYYLGQIYRRGYLGKVYPQKALD  343 (452)
T ss_dssp             HHHHHHHHHHHHHTT--CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTTTTCHHHHHHHHHHHHTTTTSSCCHHHHHH
T ss_pred             HHHHHHHHHHHHHCC--CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHCCCCCCcCHHHHHH
Confidence            666666666655432  444 555665555 33     5666666666543100000              024444555


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHhhcccCCC
Q 009850          252 AYERAQQMLKDLESEMMNKGGDRVE----QSRLFDAFLGSSSIWQPQP  295 (524)
Q Consensus       252 ~~~~al~~~p~~~~a~~~lg~~~~~----~g~~~eAi~~~~~al~~~P  295 (524)
                      .|+++.+  +.++.+.+++|.+|..    ..++.+|+..|+++....+
T Consensus       344 ~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~  389 (452)
T 3e4b_A          344 HLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT  389 (452)
T ss_dssp             HHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence            5556554  4556678888888774    4578888888888776543

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.53  E-value=1.7e-13  Score=116.64  Aligned_cols=92  Identities=10%  Similarity=-0.047  Sum_probs=80.7

Q ss_pred             HHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 009850           38 AIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQES  117 (524)
Q Consensus        38 ~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~  117 (524)
                      ++...|.....++.+|.++...|++++|+.+|++++..+|++..+++.+|.++...|++++|+.+|++++..+|.+.  .
T Consensus        42 al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~--~  119 (133)
T 2lni_A           42 AIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCK--E  119 (133)
T ss_dssp             HHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGT--H
T ss_pred             HHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCch--H
Confidence            44556778889999999999999999999999999999999999999999999999999999999999999999876  5


Q ss_pred             HHHHHHHHHHHcCC
Q 009850          118 LDNILLDLYKRCGR  131 (524)
Q Consensus       118 l~~~lg~~~~~~g~  131 (524)
                      ++..++.++...|+
T Consensus       120 ~~~~l~~~~~~~~~  133 (133)
T 2lni_A          120 AADGYQRCMMAQYN  133 (133)
T ss_dssp             HHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhcC
Confidence            66778888777664

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.53  E-value=1.7e-13  Score=135.08  Aligned_cols=169  Identities=16%  Similarity=0.165  Sum_probs=137.5

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHH------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----HHHHH
Q 009850           49 YVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDS------ALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQ----AQESL  118 (524)
Q Consensus        49 ~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~------a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~----~~~~l  118 (524)
                      +...+..++..|++++|+..+++++...+..+.      .+..+|.++...|++++|+.+|++++...+..    ....+
T Consensus        78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~  157 (293)
T 3u3w_A           78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI  157 (293)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence            344577889999999999999999998776655      34468999999999999999999999975432    12357


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 009850          119 DNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDA  198 (524)
Q Consensus       119 ~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~  198 (524)
                      ++.+|.+|...|++++|+.+|+++++......                   ...+....+++++|.+|..+|+|++|+.+
T Consensus       158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~-------------------~~~~~~~~~~~nlg~~y~~~~~y~~A~~~  218 (293)
T 3u3w_A          158 ENAIANIYAENGYLKKGIDLFEQILKQLEALH-------------------DNEEFDVKVRYNHAKALYLDSRYEESLYQ  218 (293)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSS-------------------CCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc-------------------cchhHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            88999999999999999999999997621100                   00123366899999999999999999999


Q ss_pred             HHHHHhhCCCc------HH-HHHHHHHHHHcC-CHHHHHHHHHHhc
Q 009850          199 YRRALSIAPDN------NK-MCNLGICLMKQG-RIGEAKETLRRVK  236 (524)
Q Consensus       199 ~~~Al~l~P~~------~~-~~~Lg~~~~~~G-~~~eA~~~~~~a~  236 (524)
                      +++++++.+..      .. ++++|.++..+| .+++|+.+|++++
T Consensus       219 ~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al  264 (293)
T 3u3w_A          219 VNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence            99999986443      44 899999999999 5799999999763

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.53  E-value=8.1e-13  Score=132.73  Aligned_cols=190  Identities=11%  Similarity=0.028  Sum_probs=163.2

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 009850           49 YVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQN-RAEEAIEAIKSLRSRCSDQAQESLDNILLDLYK  127 (524)
Q Consensus        49 ~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g-~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~  127 (524)
                      +..+..+....+..++|+.++.++|..+|++..+|+.++.++..+| .+++++..+..++..+|++.  .+|+..+.++.
T Consensus        57 ~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny--~aW~hR~wlL~  134 (349)
T 3q7a_A           57 MDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSY--QVWHHRLLLLD  134 (349)
T ss_dssp             HHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCH--HHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcH--HHHHHHHHHHH
Confidence            3344444455666689999999999999999999999999999999 59999999999999999997  78888888888


Q ss_pred             Hc-C-ChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHH--------HHHH
Q 009850          128 RC-G-RLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYI--------EAED  197 (524)
Q Consensus       128 ~~-g-~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~--------eAi~  197 (524)
                      .. + ++++++.++.++++.                          +|.+..+|...++++...|.++        ++++
T Consensus       135 ~l~~~~~~~EL~~~~k~L~~--------------------------dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe  188 (349)
T 3q7a_A          135 RISPQDPVSEIEYIHGSLLP--------------------------DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELD  188 (349)
T ss_dssp             HHCCSCCHHHHHHHHHHTSS--------------------------CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred             HhcCCChHHHHHHHHHHHHh--------------------------CCCCHHHHHHHHHHHHHhccccccchhhHHHHHH
Confidence            87 8 999999999999988                          9999999999999999999888        9999


Q ss_pred             HHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 009850          198 AYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVE  276 (524)
Q Consensus       198 ~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~  276 (524)
                      ++.++++.+|.+.. |++++.++..+++...              ....++++++.+.+++..+|++..+|+.+..++..
T Consensus       189 ~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~--------------~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~  254 (349)
T 3q7a_A          189 WCNEMLRVDGRNNSAWGWRWYLRVSRPGAET--------------SSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKH  254 (349)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHTTSTTCCC--------------CHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHhcccccc--------------chHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence            99999999999999 9999999999886210              01112344555559999999999999999999888


Q ss_pred             cCCH
Q 009850          277 QSRL  280 (524)
Q Consensus       277 ~g~~  280 (524)
                      .|+.
T Consensus       255 ~~~~  258 (349)
T 3q7a_A          255 FSLP  258 (349)
T ss_dssp             TTCC
T ss_pred             cCCC
Confidence            7764

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.52  E-value=5.8e-13  Score=131.25  Aligned_cols=181  Identities=12%  Similarity=0.005  Sum_probs=141.6

Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH----HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhh
Q 009850           77 DRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQ----ESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAF  152 (524)
Q Consensus        77 p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~----~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~  152 (524)
                      |.....+...+..+...|++++|+..+++++...+....    ...++.+|.++...|++++|+..|++++.......  
T Consensus        72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~--  149 (293)
T 2qfc_A           72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI--  149 (293)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSS--
T ss_pred             hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCC--
Confidence            444566778899999999999999999999998875431    23456688889999999999999999997621100  


Q ss_pred             hcccHHHHHHHhHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH---hhCCCcH----H-HHHHHHHHHHcC
Q 009850          153 NGKRTKTARSQGKKFQVSVEQE-ATRLLGNLGWALMQQNNYIEAEDAYRRAL---SIAPDNN----K-MCNLGICLMKQG  223 (524)
Q Consensus       153 ~~~~~~~a~~~~~~~~~~~~p~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al---~l~P~~~----~-~~~Lg~~~~~~G  223 (524)
                                         ++. ...+++++|.+|...|+|++|+.+|++++   +..|++.    . ++++|.+|..+|
T Consensus       150 -------------------~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~  210 (293)
T 2qfc_A          150 -------------------DVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDS  210 (293)
T ss_dssp             -------------------CTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred             -------------------chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHh
Confidence                               111 25689999999999999999999999999   4566643    3 899999999999


Q ss_pred             CHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH-HHHHhhcccC
Q 009850          224 RIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDA-FLGSSSIWQP  293 (524)
Q Consensus       224 ~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA-i~~~~~al~~  293 (524)
                      ++++|+.+|++++...               .........+.+++++|.+|..+|++++| ...|++++..
T Consensus       211 ~y~~Al~~~~kal~~~---------------~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~  266 (293)
T 2qfc_A          211 RYEESLYQVNKAIEIS---------------CRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             CHHHHHHHHHHHHHHH---------------HHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHH---------------HhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence            9999999999653211               11111222367899999999999999999 7778888754

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.52  E-value=1.2e-14  Score=153.13  Aligned_cols=148  Identities=16%  Similarity=0.113  Sum_probs=133.0

Q ss_pred             HcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-------------HHHHHHHHHH
Q 009850           58 VDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQA-------------QESLDNILLD  124 (524)
Q Consensus        58 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~-------------~~~l~~~lg~  124 (524)
                      ..+++++|+..|+.++...|....++..+|.+++..|+|++|+..|++++.++|.+.             ...+++.+|.
T Consensus       246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~  325 (457)
T 1kt0_A          246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM  325 (457)
T ss_dssp             EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence            345677888899999999999999999999999999999999999999999999772             1378889999


Q ss_pred             HHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009850          125 LYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALS  204 (524)
Q Consensus       125 ~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~  204 (524)
                      +|..+|++++|+.+|++++++                          +|+++.+|+++|.+|..+|+|++|+.+|+++++
T Consensus       326 ~~~~~g~~~~A~~~~~~al~~--------------------------~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~  379 (457)
T 1kt0_A          326 CYLKLREYTKAVECCDKALGL--------------------------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE  379 (457)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH--------------------------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHhcCHHHHHHHHHHHHhc--------------------------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            999999999999999999999                          999999999999999999999999999999999


Q ss_pred             hCCCcHH-HHHHHHHHHHcCCHHHHHHH
Q 009850          205 IAPDNNK-MCNLGICLMKQGRIGEAKET  231 (524)
Q Consensus       205 l~P~~~~-~~~Lg~~~~~~G~~~eA~~~  231 (524)
                      ++|++.. +.+++.++..+|++++|...
T Consensus       380 l~P~~~~a~~~l~~~~~~~~~~~~a~~~  407 (457)
T 1kt0_A          380 VNPQNKAARLQISMCQKKAKEHNERDRR  407 (457)
T ss_dssp             TC----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999988 99999999999999988754

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.51  E-value=5.1e-13  Score=112.84  Aligned_cols=120  Identities=13%  Similarity=0.039  Sum_probs=113.9

Q ss_pred             ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 009850           45 GDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLD  124 (524)
Q Consensus        45 ~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~  124 (524)
                      ....++.+|..+...|++++|+..|++++...|++..++..+|.++...|++++|+..+++++..+|+++  .++..+|.
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~~~   88 (131)
T 2vyi_A           11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYS--KAYGRMGL   88 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHH
T ss_pred             hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCH--HHHHHHHH
Confidence            3457899999999999999999999999999999999999999999999999999999999999999987  67889999


Q ss_pred             HHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCH
Q 009850          125 LYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNY  192 (524)
Q Consensus       125 ~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~  192 (524)
                      ++...|++++|+.+|++++..                          +|++..++..+|.++...|++
T Consensus        89 ~~~~~~~~~~A~~~~~~~~~~--------------------------~p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           89 ALSSLNKHVEAVAYYKKALEL--------------------------DPDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH--------------------------STTCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHhCCHHHHHHHHHHHHhc--------------------------CccchHHHHHHHHHHHHHhcC
Confidence            999999999999999999998                          899999999999999999875

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.51  E-value=2.8e-14  Score=132.10  Aligned_cols=164  Identities=15%  Similarity=0.026  Sum_probs=121.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHH
Q 009850           80 DSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKT  159 (524)
Q Consensus        80 ~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~  159 (524)
                      +......+.+...+|++++|.+.+.......+...  ..+..+|..+...|++++|+..|++++.+              
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------------   67 (198)
T 2fbn_A            4 SHHHHHHSSGRENLYFQGAKKSIYDYTDEEKVQSA--FDIKEEGNEFFKKNEINEAIVKYKEALDF--------------   67 (198)
T ss_dssp             ------------------CCCSGGGCCHHHHHHHH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------------
T ss_pred             cccccchhhhhhhhhhccccCchhhCCHHHHHHHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------------
Confidence            34455667777788888888888876555444443  67788999999999999999999999998              


Q ss_pred             HHHHhHHHHHhcCCCcH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHc
Q 009850          160 ARSQGKKFQVSVEQEAT----------------RLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQ  222 (524)
Q Consensus       160 a~~~~~~~~~~~~p~~~----------------~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~  222 (524)
                                  .|.++                .+++++|.++...|+|++|+.+|++++.++|++.. ++++|.++..+
T Consensus        68 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~  135 (198)
T 2fbn_A           68 ------------FIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYF  135 (198)
T ss_dssp             ------------TTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             ------------HhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc
Confidence                        44443                79999999999999999999999999999999999 99999999999


Q ss_pred             CCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH-HHHhhccc
Q 009850          223 GRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAF-LGSSSIWQ  292 (524)
Q Consensus       223 G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi-~~~~~al~  292 (524)
                      |++++|+.+|+                     +++...|++..++..++.++...++..++. ..|...+.
T Consensus       136 ~~~~~A~~~~~---------------------~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~  185 (198)
T 2fbn_A          136 GFLEEAKENLY---------------------KAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD  185 (198)
T ss_dssp             TCHHHHHHHHH---------------------HHHHHSTTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred             ccHHHHHHHHH---------------------HHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999                     788899999999999999999999888877 34554443

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.51  E-value=2.8e-13  Score=121.29  Aligned_cols=115  Identities=13%  Similarity=-0.000  Sum_probs=106.2

Q ss_pred             ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 009850           45 GDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLD  124 (524)
Q Consensus        45 ~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~  124 (524)
                      ....|+.+|.+++..|++++|+.+|++++..+|++..+++.+|.+|..+|++++|+.+|++++.++|++.  .+++.+|.
T Consensus        10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~lg~   87 (164)
T 3sz7_A           10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYS--KAWSRLGL   87 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH--HHHHHHHH
Confidence            4567999999999999999999999999999999999999999999999999999999999999999997  78899999


Q ss_pred             HHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHH
Q 009850          125 LYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALM  187 (524)
Q Consensus       125 ~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~  187 (524)
                      +|...|++++|+.+|++++++                          +|++..+|+.++....
T Consensus        88 ~~~~~g~~~~A~~~~~~al~~--------------------------~p~~~~~~~~~~l~~~  124 (164)
T 3sz7_A           88 ARFDMADYKGAKEAYEKGIEA--------------------------EGNGGSDAMKRGLETT  124 (164)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH--------------------------HSSSCCHHHHHHHHHH
T ss_pred             HHHHccCHHHHHHHHHHHHHh--------------------------CCCchHHHHHHHHHHH
Confidence            999999999999999999999                          7888777766665544

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.50  E-value=1.3e-12  Score=131.29  Aligned_cols=217  Identities=11%  Similarity=-0.011  Sum_probs=180.3

Q ss_pred             HHHhcCCCChHHHHHHHHHHHHcC-ChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHhCCCc
Q 009850           37 HAIHKVPVGDTPYVRAKNVQLVDK-DPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQ-N-RAEEAIEAIKSLRSRCSDQ  113 (524)
Q Consensus        37 ~~~~~~p~~~~~~~~lg~~~~~~g-~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~-g-~~~eAi~~~~~al~~~p~~  113 (524)
                      .++...|....+|+..+.++...| ++++++..+..++..+|.+..+|+.++.++..+ + ++++++.++.+++..+|.+
T Consensus        79 ~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkN  158 (349)
T 3q7a_A           79 IIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKN  158 (349)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTC
T ss_pred             HHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC
Confidence            466678999999999999999999 599999999999999999999999999999998 8 9999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHcCChH--------HHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHH
Q 009850          114 AQESLDNILLDLYKRCGRLD--------DQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWA  185 (524)
Q Consensus       114 ~~~~l~~~lg~~~~~~g~~~--------eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~  185 (524)
                      .  .+|...+.++...|.++        ++++++.++++.                          +|.+..+|+.++.+
T Consensus       159 y--~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--------------------------dp~N~SAW~~R~~l  210 (349)
T 3q7a_A          159 Y--HTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV--------------------------DGRNNSAWGWRWYL  210 (349)
T ss_dssp             H--HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--------------------------CTTCHHHHHHHHHH
T ss_pred             H--HHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh--------------------------CCCCHHHHHHHHHH
Confidence            6  67777788888888887        999999999998                          99999999999999


Q ss_pred             HHHcCC-------HHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCH--------------------HHHHHHHHHhcc
Q 009850          186 LMQQNN-------YIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRI--------------------GEAKETLRRVKP  237 (524)
Q Consensus       186 ~~~~g~-------~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~--------------------~eA~~~~~~a~~  237 (524)
                      +...++       ++++++++.+++.++|++.. |+.+..++...|+.                    ..-...+.....
T Consensus       211 L~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (349)
T 3q7a_A          211 RVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPS  290 (349)
T ss_dssp             HTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC
T ss_pred             HHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHh
Confidence            999987       79999999999999999999 99888888887764                    111111111100


Q ss_pred             cccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcc-cCCCC
Q 009850          238 AVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIW-QPQPC  296 (524)
Q Consensus       238 ~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al-~~~P~  296 (524)
                         ...            .....+....++.-++.+|.+.|+.++|+.++..+. +.+|-
T Consensus       291 ---~~~------------~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpi  335 (349)
T 3q7a_A          291 ---DPL------------PEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQM  335 (349)
T ss_dssp             ----CC------------CSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGG
T ss_pred             ---ccc------------ccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChH
Confidence               000            001235677889999999999999999999999876 55553

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.50  E-value=2.5e-13  Score=122.94  Aligned_cols=125  Identities=14%  Similarity=0.161  Sum_probs=111.6

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHH
Q 009850           90 MKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQV  169 (524)
Q Consensus        90 ~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~  169 (524)
                      +...|++++|+..+++++..+|+++  .++..+|.+|...|++++|+.+|++++.+                        
T Consensus        20 ~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~~~~~~A~~~~~~al~~------------------------   73 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRANPQNS--EQWALLGEYYLWQNDYSNSLLAYRQALQL------------------------   73 (177)
T ss_dssp             CC-----CCCCHHHHHHHHHCCSCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------------
T ss_pred             hhhccCHHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHc------------------------
Confidence            4567899999999999999999997  78899999999999999999999999998                        


Q ss_pred             hcCCCcHHHHHHHHHH-HHHcCCH--HHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCC
Q 009850          170 SVEQEATRLLGNLGWA-LMQQNNY--IEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADG  242 (524)
Q Consensus       170 ~~~p~~~~a~~~Lg~~-~~~~g~~--~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~  242 (524)
                        +|+++.++..+|.+ +...|++  ++|+.+|++++..+|++.. ++++|.++...|++++|+..|++++...|..
T Consensus        74 --~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  148 (177)
T 2e2e_A           74 --RGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR  148 (177)
T ss_dssp             --HCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred             --CCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence              89999999999999 8899999  9999999999999999998 9999999999999999999999766655554

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.50  E-value=1.5e-12  Score=109.05  Aligned_cols=116  Identities=28%  Similarity=0.329  Sum_probs=71.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHH
Q 009850           80 DSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKT  159 (524)
Q Consensus        80 ~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~  159 (524)
                      ..+++.+|.++...|++++|+..|++++...|++.  .++..+|.++...|++++|+.+|++++..              
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------------   72 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA--EAWYNLGNAYYKQGDYDEAIEYYQKALEL--------------   72 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcH--HHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------------
Confidence            45566666666666666666666666666666554  44555566666666666666666666655              


Q ss_pred             HHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcC
Q 009850          160 ARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQG  223 (524)
Q Consensus       160 a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G  223 (524)
                                  +|.+..++..+|.++...|++++|+.+|++++..+|++.. +.++|.++...|
T Consensus        73 ------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           73 ------------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             ------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             ------------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence                        5556666666666666666666666666666666666655 556666655443

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.47  E-value=6.6e-13  Score=130.84  Aligned_cols=174  Identities=11%  Similarity=-0.006  Sum_probs=136.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH----HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHH
Q 009850           83 LKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQ----ESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTK  158 (524)
Q Consensus        83 ~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~----~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~  158 (524)
                      +...+..+...|++++|+..+++++...+..+.    ...+..+|.++...|++++|+.+|++++.+...          
T Consensus        78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~----------  147 (293)
T 3u3w_A           78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLT----------  147 (293)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCC----------
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcc----------
Confidence            445578889999999999999999998876543    234446888888899999999999999986211          


Q ss_pred             HHHHHhHHHHHhcCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCc----HH-HHHHHHHHHHcCCHHH
Q 009850          159 TARSQGKKFQVSVEQE---ATRLLGNLGWALMQQNNYIEAEDAYRRALSIA---PDN----NK-MCNLGICLMKQGRIGE  227 (524)
Q Consensus       159 ~a~~~~~~~~~~~~p~---~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~---P~~----~~-~~~Lg~~~~~~G~~~e  227 (524)
                                   .++   ...+++++|.+|...|+|++|+.+|+++++..   |.+    .. ++++|.+|..+|++++
T Consensus       148 -------------~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~  214 (293)
T 3u3w_A          148 -------------GIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEE  214 (293)
T ss_dssp             -------------CSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             -------------cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHH
Confidence                         111   14579999999999999999999999999532   122    22 8899999999999999


Q ss_pred             HHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHhhcccCC
Q 009850          228 AKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSR-LFDAFLGSSSIWQPQ  294 (524)
Q Consensus       228 A~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~-~~eAi~~~~~al~~~  294 (524)
                      |+.++++++...               +.....+..+.+++++|.++..+|+ +++|+..|++++...
T Consensus       215 A~~~~~~al~~~---------------~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~  267 (293)
T 3u3w_A          215 SLYQVNKAIEIS---------------CRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HHHHHHHHHHHH---------------HHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH---------------HHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence            999999653321               1112233447899999999999995 699999999998654

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.47  E-value=1.1e-12  Score=112.80  Aligned_cols=100  Identities=13%  Similarity=0.036  Sum_probs=92.3

Q ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-----HHHHHH
Q 009850           46 DTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQA-----QESLDN  120 (524)
Q Consensus        46 ~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~-----~~~l~~  120 (524)
                      ..++..+|..++..|+|++|+.+|+++++++|+++.+|.++|.+|..+|++++|+..|++++.++|++.     ...++.
T Consensus         8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~   87 (127)
T 4gcn_A            8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS   87 (127)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence            346889999999999999999999999999999999999999999999999999999999999988542     235778


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHH
Q 009850          121 ILLDLYKRCGRLDDQIALLKHKLYL  145 (524)
Q Consensus       121 ~lg~~~~~~g~~~eA~~~~~~al~l  145 (524)
                      .+|.++...|++++|+.+|++++..
T Consensus        88 ~lg~~~~~~~~~~~A~~~~~kal~~  112 (127)
T 4gcn_A           88 RAGNAFQKQNDLSLAVQWFHRSLSE  112 (127)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            8999999999999999999999987

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.47  E-value=1.9e-12  Score=147.31  Aligned_cols=228  Identities=10%  Similarity=0.044  Sum_probs=164.4

Q ss_pred             HHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCCh
Q 009850           53 KNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRL  132 (524)
Q Consensus        53 g~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~  132 (524)
                      ...+...|++++|++.+.++     +.+.+|+.+|.++...|++++|+..|.++     +++  ..+..++.++.+.|++
T Consensus      1083 ~VLie~i~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~--say~eVa~~~~~lGky 1150 (1630)
T 1xi4_A         1083 QVLIEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDP--SSYMEVVQAANTSGNW 1150 (1630)
T ss_pred             HHHHHHHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CCh--HHHHHHHHHHHHcCCH
Confidence            33344778888888888765     56788888888888888888888888775     443  4556778888888888


Q ss_pred             HHHHHHHHHHHHHhhcc-------Hhhhc-ccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009850          133 DDQIALLKHKLYLIQQG-------LAFNG-KRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALS  204 (524)
Q Consensus       133 ~eA~~~~~~al~l~~~~-------~~~~~-~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~  204 (524)
                      ++|+++|..+.+..+..       .++.. .+.+....+       ++..+...+..+|..+...|+|++|+.+|.++  
T Consensus      1151 EEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~f-------I~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-- 1221 (1630)
T 1xi4_A         1151 EELVKYLQMARKKARESYVETELIFALAKTNRLAELEEF-------INGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-- 1221 (1630)
T ss_pred             HHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHH-------HhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--
Confidence            88888888877665222       22222 222222222       12334456778999999999999999999996  


Q ss_pred             hCCCcHHHHHHHHHHHHcCCHHHHHHHHHHhcccccCCC----------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 009850          205 IAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVADGP----------RGVDSHLKAYERAQQMLKDLESEMMNKGGDR  274 (524)
Q Consensus       205 l~P~~~~~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~----------~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~  274 (524)
                           ..|..+|.+|.++|++++|+++++++...  ..|          +.+..|..+..    ....+++.+..++..|
T Consensus      1222 -----~ny~rLA~tLvkLge~q~AIEaarKA~n~--~aWkev~~acve~~Ef~LA~~cgl----~Iiv~~deLeeli~yY 1290 (1630)
T 1xi4_A         1222 -----SNFGRLASTLVHLGEYQAAVDGARKANST--RTWKEVCFACVDGKEFRLAQMCGL----HIVVHADELEELINYY 1290 (1630)
T ss_pred             -----hHHHHHHHHHHHhCCHHHHHHHHHHhCCH--HHHHHHHHHHhhhhHHHHHHHHHH----hhhcCHHHHHHHHHHH
Confidence                 24999999999999999999999998332  222          22333332222    1334556677899999


Q ss_pred             HHcCCHHHHHHHHhhcccCCCCCCCccccccccccccc
Q 009850          275 VEQSRLFDAFLGSSSIWQPQPCKDHILPTTNAIKTRDD  312 (524)
Q Consensus       275 ~~~g~~~eAi~~~~~al~~~P~~~~~l~~~~l~~~~q~  312 (524)
                      ...|.+++|+..++.++.++|.+..+...++.+++.-.
T Consensus      1291 e~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~ 1328 (1630)
T 1xi4_A         1291 QDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK 1328 (1630)
T ss_pred             HHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCC
Confidence            99999999999999999999888776655555555433

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.47  E-value=5.8e-13  Score=114.48  Aligned_cols=112  Identities=16%  Similarity=0.091  Sum_probs=95.5

Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccH
Q 009850           78 RVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRT  157 (524)
Q Consensus        78 ~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~  157 (524)
                      +.+.++..+|.+++..|+|++|+.+|+++++++|+++  .++..+|.+|..+|++++|+..|++++++.+.....     
T Consensus         6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~--~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~-----   78 (127)
T 4gcn_A            6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNI--TFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRAD-----   78 (127)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC-----
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchh-----
Confidence            3456788999999999999999999999999999997  788999999999999999999999999984321100     


Q ss_pred             HHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH
Q 009850          158 KTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNN  210 (524)
Q Consensus       158 ~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~  210 (524)
                                    .+..+.++.++|.++...|++++|+.+|++++...|+..
T Consensus        79 --------------~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~  117 (127)
T 4gcn_A           79 --------------YKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPE  117 (127)
T ss_dssp             --------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCHH
T ss_pred             --------------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCHH
Confidence                          001146899999999999999999999999999988643

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.47  E-value=8.7e-14  Score=135.55  Aligned_cols=189  Identities=14%  Similarity=0.049  Sum_probs=158.1

Q ss_pred             hhhhhhHH-HHhcCCCChHHHHHH-------HHHHHHcCChHHHHHHHHHHHHcCCCcHHH-------------------
Q 009850           30 RTRSDSFH-AIHKVPVGDTPYVRA-------KNVQLVDKDPEKAIPLFWAAINAGDRVDSA-------------------   82 (524)
Q Consensus        30 ~~~~~~~~-~~~~~p~~~~~~~~l-------g~~~~~~g~~~~Ai~~~~~al~~~p~~~~a-------------------   82 (524)
                      ..+...|. ++...|...++|..+       +.++...++..+++..+++.+.+.|....+                   
T Consensus        23 ~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v~~r~  102 (282)
T 4f3v_A           23 ARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPVTSPL  102 (282)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEECSSHH
T ss_pred             HHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccccCCHh
Confidence            33444454 557789999999999       899999999999999999999987765444                   


Q ss_pred             --HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHH
Q 009850           83 --LKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTA  160 (524)
Q Consensus        83 --~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a  160 (524)
                        ...++.++...|+|++|.+.|..++...|++.   ..+.+|.++.+.++|++|+..|+.++..               
T Consensus       103 dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~---~~~~~a~l~~~~~r~~dA~~~l~~a~~~---------------  164 (282)
T 4f3v_A          103 AITMGFAACEAAQGNYADAMEALEAAPVAGSEHL---VAWMKAVVYGAAERWTDVIDQVKSAGKW---------------  164 (282)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH---HHHHHHHHHHHTTCHHHHHHHHTTGGGC---------------
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH---HHHHHHHHHHHcCCHHHHHHHHHHhhcc---------------
Confidence              44588999999999999999999998888764   6688899999999999999999876543               


Q ss_pred             HHHhHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CC-cHH-HHHHHHHHHHcCCHHHHHHHHH
Q 009850          161 RSQGKKFQVSVEQEA---TRLLGNLGWALMQQNNYIEAEDAYRRALSIA--PD-NNK-MCNLGICLMKQGRIGEAKETLR  233 (524)
Q Consensus       161 ~~~~~~~~~~~~p~~---~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~--P~-~~~-~~~Lg~~~~~~G~~~eA~~~~~  233 (524)
                                  |+.   ..+++++|.++..+|++++|+.+|++++.-.  |. ... ++++|.|+.++|+.++|...|+
T Consensus       165 ------------~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~  232 (282)
T 4f3v_A          165 ------------PDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLE  232 (282)
T ss_dssp             ------------SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             ------------CCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence                        222   4589999999999999999999999999644  55 455 9999999999999999999999


Q ss_pred             HhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 009850          234 RVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNK  270 (524)
Q Consensus       234 ~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l  270 (524)
                                           +++...|+ ..++..|
T Consensus       233 ---------------------~a~a~~P~-~~~~~aL  247 (282)
T 4f3v_A          233 ---------------------WLQTTHPE-PKVAAAL  247 (282)
T ss_dssp             ---------------------HHHHHSCC-HHHHHHH
T ss_pred             ---------------------HHHhcCCc-HHHHHHH
Confidence                                 67777787 6655554

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.47  E-value=8.4e-13  Score=113.60  Aligned_cols=105  Identities=18%  Similarity=0.116  Sum_probs=62.1

Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcc
Q 009850           76 GDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGK  155 (524)
Q Consensus        76 ~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~  155 (524)
                      +|.++..++.+|.++...|++++|+..|++++..+|+++  .++..+|.++...|++++|+..|++++.+          
T Consensus         5 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~al~~----------   72 (137)
T 3q49_B            5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVA--VYYTNRALCYLKMQQPEQALADCRRALEL----------   72 (137)
T ss_dssp             -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------
T ss_pred             ccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcH--HHHHHHHHHHHHhcCHHHHHHHHHHHHHh----------
Confidence            345555566666666666666666666666666665554  45555566666666666666666666555          


Q ss_pred             cHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 009850          156 RTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPD  208 (524)
Q Consensus       156 ~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~  208 (524)
                                      +|+++.+++++|.++...|++++|+.+|++++.++|+
T Consensus        73 ----------------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~  109 (137)
T 3q49_B           73 ----------------DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE  109 (137)
T ss_dssp             ----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             ----------------CchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence                            5555666666666666666666666666666665554

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.46  E-value=3.5e-12  Score=106.65  Aligned_cols=117  Identities=21%  Similarity=0.191  Sum_probs=110.7

Q ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 009850           46 DTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDL  125 (524)
Q Consensus        46 ~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~  125 (524)
                      ...|+.+|.++...|++++|+..|.+++...|++..++..+|.++...|++++|+.++++++...|.+.  ..+..+|.+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~la~~   86 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA--EAWYNLGNA   86 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccH--HHHHHHHHH
Confidence            567899999999999999999999999999999999999999999999999999999999999999887  677899999


Q ss_pred             HHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 009850          126 YKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQN  190 (524)
Q Consensus       126 ~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g  190 (524)
                      +...|++++|+.+|++++..                          +|++..++..+|.++...|
T Consensus        87 ~~~~~~~~~A~~~~~~~~~~--------------------------~~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           87 YYKQGDYDEAIEYYQKALEL--------------------------DPNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH--------------------------CTTCHHHHHHHHHHHHHHC
T ss_pred             HHHhcCHHHHHHHHHHHHHh--------------------------CCCcHHHHHHHHHHHHhcc
Confidence            99999999999999999998                          8999999999999988765

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.46  E-value=5.7e-14  Score=147.95  Aligned_cols=195  Identities=12%  Similarity=0.112  Sum_probs=148.0

Q ss_pred             ChHHHHHHHHH----HHHcCCCcHHHHHHHHHHH------------HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 009850           61 DPEKAIPLFWA----AINAGDRVDSALKDMAIVM------------KQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLD  124 (524)
Q Consensus        61 ~~~~Ai~~~~~----al~~~p~~~~a~~~La~~~------------~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~  124 (524)
                      .++.|+..+++    ++.++|..  +|...|...            ..++++++|+..|+.++...|..+  ..+..+|.
T Consensus       201 ~~e~al~~~~~ge~~~l~i~P~~--ay~~~g~~~~~ip~~~~l~y~~~l~~~~~A~~~~~~~~~~~~~~a--~~~~~~G~  276 (457)
T 1kt0_A          201 GIDKALEKMQREEQCILYLGPRY--GFGEAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQA--AIVKEKGT  276 (457)
T ss_dssp             HHHHHHTTCCBTCEEEEEECGGG--TTCSSCBGGGTBCTTCCEEEEEEEEEEECCCCGGGSCHHHHHHHH--HHHHHHHH
T ss_pred             HHHHHHHhCCCCCEEEEEECccc--ccCCCCCcccCCCCCCEEEEEhhhhhcccCcchhhcCHHHHHHHH--HHHHHHHH
Confidence            45667766666    66677764  344433322            144567788888888888877776  67889999


Q ss_pred             HHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009850          125 LYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALS  204 (524)
Q Consensus       125 ~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~  204 (524)
                      .|...|+|++|+..|++++++.+....+..   +..        ...++....+|+++|.+|.++|+|++|+.+|++++.
T Consensus       277 ~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~---~~~--------~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~  345 (457)
T 1kt0_A          277 VYFKGGKYMQAVIQYGKIVSWLEMEYGLSE---KES--------KASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG  345 (457)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHTTCCSCCH---HHH--------HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHHhcccccCCh---HHH--------HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence            999999999999999999998432211000   000        000122268999999999999999999999999999


Q ss_pred             hCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 009850          205 IAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDA  283 (524)
Q Consensus       205 l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA  283 (524)
                      ++|++.. |+++|.+|..+|++++|+.+|+                     +++++.|++..++.+++.++..++++.+|
T Consensus       346 ~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~---------------------~al~l~P~~~~a~~~l~~~~~~~~~~~~a  404 (457)
T 1kt0_A          346 LDSANEKGLYRRGEAQLLMNEFESAKGDFE---------------------KVLEVNPQNKAARLQISMCQKKAKEHNER  404 (457)
T ss_dssp             HSTTCHHHHHHHHHHHHHTTCHHHHHHHHH---------------------HHHTTC----CHHHHHHHHHHHHHHHHHH
T ss_pred             cCCccHHHHHHHHHHHHHccCHHHHHHHHH---------------------HHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999 9999999999999999999999                     78889999999999999999999999988


Q ss_pred             HHH-Hhhcc
Q 009850          284 FLG-SSSIW  291 (524)
Q Consensus       284 i~~-~~~al  291 (524)
                      ... |...+
T Consensus       405 ~~~~~~~~f  413 (457)
T 1kt0_A          405 DRRIYANMF  413 (457)
T ss_dssp             HHHHHHHC-
T ss_pred             HHHHHHHHH
Confidence            764 55554

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.45  E-value=3.3e-12  Score=134.20  Aligned_cols=225  Identities=8%  Similarity=-0.022  Sum_probs=176.2

Q ss_pred             hhhhHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHcCCHHH----HHHHHHHH
Q 009850           32 RSDSFHAIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINA-GDRVDSALKDMAIVMKQQNRAEE----AIEAIKSL  106 (524)
Q Consensus        32 ~~~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~-~p~~~~a~~~La~~~~~~g~~~e----Ai~~~~~a  106 (524)
                      +...+..... +..+.+++.+|.+|...+...++...+...... .+.++.+++.||.+|...+.+++    +..+++.+
T Consensus        93 A~~~~~~Aa~-~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a  171 (452)
T 3e4b_A           93 AESLLKKAFA-NGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAA  171 (452)
T ss_dssp             HHHHHHHHHH-TTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-CCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHH
Confidence            3334443333 334558999999999988766554444444433 24567899999999999995554    44455555


Q ss_pred             HHhCCCcHHHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHH
Q 009850          107 RSRCSDQAQESLDNILLDLYKRCG---RLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLG  183 (524)
Q Consensus       107 l~~~p~~~~~~l~~~lg~~~~~~g---~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg  183 (524)
                      ...+|.     +++.+|.+|...|   ++++|+.+|+++.+.                          .+..+..++++|
T Consensus       172 ~~~~~~-----a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~--------------------------g~~~a~~~~~Lg  220 (452)
T 3e4b_A          172 LNTTDI-----CYVELATVYQKKQQPEQQAELLKQMEAGVSR--------------------------GTVTAQRVDSVA  220 (452)
T ss_dssp             TTTCTT-----HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT--------------------------TCSCHHHHHHHH
T ss_pred             HcCCHH-----HHHHHHHHHHHcCCcccHHHHHHHHHHHHHC--------------------------CCHHHHHHHHHH
Confidence            554443     5678899999999   999999999999988                          788888889999


Q ss_pred             HHHHHc----CCHHHHHHHHHHHHhhCCCcHH-HHHHHHH-H--HHcCCHHHHHHHHHHhcccc-cC-------------
Q 009850          184 WALMQQ----NNYIEAEDAYRRALSIAPDNNK-MCNLGIC-L--MKQGRIGEAKETLRRVKPAV-AD-------------  241 (524)
Q Consensus       184 ~~~~~~----g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~-~--~~~G~~~eA~~~~~~a~~~~-~~-------------  241 (524)
                      .+|...    +++++|+.+|+++.   |.++. ++++|.+ +  ...|++++|+.+|+++.... +.             
T Consensus       221 ~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~  297 (452)
T 3e4b_A          221 RVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYYEGK  297 (452)
T ss_dssp             HHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCS
T ss_pred             HHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC
Confidence            999766    79999999999998   88888 9999999 4  56899999999999985322 11             


Q ss_pred             -CCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHhhcccCC
Q 009850          242 -GPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVE----QSRLFDAFLGSSSIWQPQ  294 (524)
Q Consensus       242 -~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~----~g~~~eAi~~~~~al~~~  294 (524)
                       ...+.++|+..|+++.   +.++.+++++|.+|..    ..++.+|+..|+++.+..
T Consensus       298 g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  352 (452)
T 3e4b_A          298 WVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG  352 (452)
T ss_dssp             SSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT
T ss_pred             CCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC
Confidence             1138899999999999   9999999999998887    449999999999998753

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.45  E-value=3.1e-13  Score=119.96  Aligned_cols=112  Identities=15%  Similarity=0.068  Sum_probs=101.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-------c-----HH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCC
Q 009850          176 TRLLGNLGWALMQQNNYIEAEDAYRRALSIAPD-------N-----NK-MCNLGICLMKQGRIGEAKETLRRVKPAVADG  242 (524)
Q Consensus       176 ~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-------~-----~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~  242 (524)
                      +..+.++|..++..|+|++|+..|+++++++|+       +     .. |+|+|.++..+|++++|+.+|++        
T Consensus        11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~k--------   82 (159)
T 2hr2_A           11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADK--------   82 (159)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHH--------
Confidence            457899999999999999999999999999999       3     23 99999999999999999999995        


Q ss_pred             CcCHHHHHHHHHHHHHhCCCCHHHH----HHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCcc
Q 009850          243 PRGVDSHLKAYERAQQMLKDLESEM----MNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL  301 (524)
Q Consensus       243 ~~~~~~A~~~~~~al~~~p~~~~a~----~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~l  301 (524)
                            |++.|.+..+++|++..+|    +++|.++..+|++++|+.+|++++.++|.+....
T Consensus        83 ------AL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~  139 (159)
T 2hr2_A           83 ------ALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGET  139 (159)
T ss_dssp             ------HHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCC
T ss_pred             ------HHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHH
Confidence                  4455667777799999999    9999999999999999999999999999988765

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.45  E-value=7.6e-13  Score=118.19  Aligned_cols=120  Identities=15%  Similarity=0.035  Sum_probs=108.8

Q ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHHHc------------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009850           46 DTPYVRAKNVQLVDKDPEKAIPLFWAAINA------------------GDRVDSALKDMAIVMKQQNRAEEAIEAIKSLR  107 (524)
Q Consensus        46 ~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~------------------~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al  107 (524)
                      ...+..+|..++..|+|++|+..|.+++..                  +|.+..++.++|.+|..+|++++|+..+++++
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al   90 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL   90 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            456889999999999999999999999999                  77788999999999999999999999999999


Q ss_pred             HhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcH-HHHHHHHHHH
Q 009850          108 SRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEAT-RLLGNLGWAL  186 (524)
Q Consensus       108 ~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~-~a~~~Lg~~~  186 (524)
                      .++|+++  .+++.+|.+|..+|++++|+..|++++.+                          +|++. .+...++.+.
T Consensus        91 ~~~p~~~--~a~~~~g~~~~~~g~~~~A~~~~~~al~l--------------------------~p~~~~~~~~~l~~~~  142 (162)
T 3rkv_A           91 KREETNE--KALFRRAKARIAAWKLDEAEEDLKLLLRN--------------------------HPAAASVVAREMKIVT  142 (162)
T ss_dssp             HHSTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------------CGGGHHHHHHHHHHHH
T ss_pred             hcCCcch--HHHHHHHHHHHHHhcHHHHHHHHHHHHhc--------------------------CCCCHHHHHHHHHHHH
Confidence            9999997  78899999999999999999999999999                          88887 6677787777


Q ss_pred             HHcCCHH
Q 009850          187 MQQNNYI  193 (524)
Q Consensus       187 ~~~g~~~  193 (524)
                      ...+++.
T Consensus       143 ~~~~~~~  149 (162)
T 3rkv_A          143 ERRAEKK  149 (162)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHH
Confidence            6655443

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.45  E-value=2e-14  Score=147.93  Aligned_cols=216  Identities=10%  Similarity=0.068  Sum_probs=89.7

Q ss_pred             ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 009850           45 GDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLD  124 (524)
Q Consensus        45 ~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~  124 (524)
                      .++.|..+|..+...|++++|+..|.++     .++..+..++.++...|++++|+.+++.+.+..++ +  .+...++.
T Consensus        31 ~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~-~--~i~~~Li~  102 (449)
T 1b89_A           31 EPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-S--YVETELIF  102 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc-c--hhHHHHHH
Confidence            3468999999999999999999999764     46678999999999999999999999998886444 3  55677888


Q ss_pred             HHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009850          125 LYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALS  204 (524)
Q Consensus       125 ~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~  204 (524)
                      +|.++|+++++.++++                               .|+ ..+|..+|..+...|+|++|..+|.++  
T Consensus       103 ~Y~Klg~l~e~e~f~~-------------------------------~pn-~~a~~~IGd~~~~~g~yeeA~~~Y~~a--  148 (449)
T 1b89_A          103 ALAKTNRLAELEEFIN-------------------------------GPN-NAHIQQVGDRCYDEKMYDAAKLLYNNV--  148 (449)
T ss_dssp             ------CHHHHTTTTT-------------------------------CC-----------------CTTTHHHHHHHT--
T ss_pred             HHHHhCCHHHHHHHHc-------------------------------CCc-HHHHHHHHHHHHHcCCHHHHHHHHHHh--
Confidence            8999999999887664                               233 348999999999999999999999977  


Q ss_pred             hCCCcHHHHHHHHHHHHcCCHHHHHHHHHHhcccccCCC----------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 009850          205 IAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVADGP----------RGVDSHLKAYERAQQMLKDLESEMMNKGGDR  274 (524)
Q Consensus       205 l~P~~~~~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~----------~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~  274 (524)
                           ..|..+|.|+.++|++++|++.|+++.  .+..|          +.++.|..+... +.   ..++-...+...|
T Consensus       149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA~--~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~---~~ad~l~~lv~~Y  217 (449)
T 1b89_A          149 -----SNFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEFRLAQMCGLH-IV---VHADELEELINYY  217 (449)
T ss_dssp             -----TCHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCHHHHHHTTTT-TT---TCHHHHHHHHHHH
T ss_pred             -----hhHHHHHHHHHHhccHHHHHHHHHHcC--CchhHHHHHHHHHHcCcHHHHHHHHHH-HH---hCHhhHHHHHHHH
Confidence                 128899999999999999999999883  22222          455555443332 11   3444455688899


Q ss_pred             HHcCCHHHHHHHHhhcccCCCCCCCcccccccccccccc
Q 009850          275 VEQSRLFDAFLGSSSIWQPQPCKDHILPTTNAIKTRDDF  313 (524)
Q Consensus       275 ~~~g~~~eAi~~~~~al~~~P~~~~~l~~~~l~~~~q~l  313 (524)
                      ...|++++|+..++.++.+++.+..+...++++++.-..
T Consensus       218 ek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p  256 (449)
T 1b89_A          218 QDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKP  256 (449)
T ss_dssp             HHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCH
T ss_pred             HHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCH
Confidence            999999999999999999998887766555666654433

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.44  E-value=1.6e-12  Score=111.82  Aligned_cols=103  Identities=15%  Similarity=0.082  Sum_probs=97.6

Q ss_pred             CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 009850           42 VPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNI  121 (524)
Q Consensus        42 ~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~  121 (524)
                      .+.....|+.+|..++..|++++|+..|.+++..+|+++.+++.+|.++..+|++++|+..|++++.++|+++  .+++.
T Consensus         5 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~   82 (137)
T 3q49_B            5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV--KAHFF   82 (137)
T ss_dssp             -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHH
T ss_pred             ccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhH--HHHHH
Confidence            4566788999999999999999999999999999999999999999999999999999999999999999987  78899


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHHh
Q 009850          122 LLDLYKRCGRLDDQIALLKHKLYLI  146 (524)
Q Consensus       122 lg~~~~~~g~~~eA~~~~~~al~l~  146 (524)
                      +|.+|...|++++|+..|++++.+.
T Consensus        83 l~~~~~~~~~~~~A~~~~~~a~~~~  107 (137)
T 3q49_B           83 LGQCQLEMESYDEAIANLQRAYSLA  107 (137)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHC
Confidence            9999999999999999999999984

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.44  E-value=3.7e-12  Score=105.51  Aligned_cols=111  Identities=14%  Similarity=0.068  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHH
Q 009850           80 DSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKT  159 (524)
Q Consensus        80 ~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~  159 (524)
                      +..++.+|.++...|++++|+..|++++..+|.++  .++..+|.++...|++++|+..+++++..              
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------------   67 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNH--VLYSNRSAAYAKKGDYQKAYEDGCKTVDL--------------   67 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------------
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcH--HHHHHHHHHHHhhccHHHHHHHHHHHHHh--------------
Confidence            34455555555555555555555555555555544  34455555555555555555555555555              


Q ss_pred             HHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHH
Q 009850          160 ARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGIC  218 (524)
Q Consensus       160 a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~  218 (524)
                                  +|+++.+++.+|.++...|++++|+.+|+++++.+|++.. +..++.+
T Consensus        68 ------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  115 (118)
T 1elw_A           68 ------------KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM  115 (118)
T ss_dssp             ------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             ------------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence                        4555555555555555555555555555555555555555 4444443

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.44  E-value=9.9e-13  Score=112.03  Aligned_cols=95  Identities=14%  Similarity=0.055  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Q 009850           49 YVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKR  128 (524)
Q Consensus        49 ~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~  128 (524)
                      ++.+|..++..|++++|+..|++++..+|+++.+|+.+|.++...|++++|+..|+++++++|+++  .++..+|.+|..
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~--~~~~~la~~~~~   97 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI--AVHAALAVSHTN   97 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHH
Confidence            566666666666666666666666666666666666666666666666666666666666666655  455556666666


Q ss_pred             cCChHHHHHHHHHHHHH
Q 009850          129 CGRLDDQIALLKHKLYL  145 (524)
Q Consensus       129 ~g~~~eA~~~~~~al~l  145 (524)
                      .|++++|+..|++++++
T Consensus        98 ~g~~~~A~~~~~~al~~  114 (121)
T 1hxi_A           98 EHNANAALASLRAWLLS  114 (121)
T ss_dssp             HHHHHHHHHHHHHHHC-
T ss_pred             cCCHHHHHHHHHHHHHh
Confidence            66666666666666555

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.44  E-value=1.6e-12  Score=119.35  Aligned_cols=158  Identities=15%  Similarity=0.102  Sum_probs=125.6

Q ss_pred             HHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHHHcCC
Q 009850           56 QLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSD----QAQESLDNILLDLYKRCGR  131 (524)
Q Consensus        56 ~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~----~~~~~l~~~lg~~~~~~g~  131 (524)
                      .+..|++++|+..++......+....++..+|.++...|++++|+.++++++.+...    .....++..+|.+|...|+
T Consensus         2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~   81 (203)
T 3gw4_A            2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN   81 (203)
T ss_dssp             -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence            367899999999666555444477899999999999999999999999999985431    1224678899999999999


Q ss_pred             hHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCC----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 009850          132 LDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQ----EATRLLGNLGWALMQQNNYIEAEDAYRRALSIAP  207 (524)
Q Consensus       132 ~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p----~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P  207 (524)
                      +++|+.++++++.+..                       ..+    ....++.++|.++...|++++|+.++++++.+.+
T Consensus        82 ~~~A~~~~~~al~~~~-----------------------~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~  138 (203)
T 3gw4_A           82 WDAARRCFLEERELLA-----------------------SLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQ  138 (203)
T ss_dssp             HHHHHHHHHHHHHHHH-----------------------HSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH-----------------------HcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            9999999999998721                       123    2256899999999999999999999999997642


Q ss_pred             C--cHH-----HHHHHHHHHHcCCHHHHHHHHHHhc
Q 009850          208 D--NNK-----MCNLGICLMKQGRIGEAKETLRRVK  236 (524)
Q Consensus       208 ~--~~~-----~~~Lg~~~~~~G~~~eA~~~~~~a~  236 (524)
                      .  +..     +.++|.++..+|++++|+.++++++
T Consensus       139 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  174 (203)
T 3gw4_A          139 QADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR  174 (203)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence            2  211     6799999999999999999999764

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.44  E-value=1e-12  Score=117.39  Aligned_cols=118  Identities=19%  Similarity=0.130  Sum_probs=104.0

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------CCCcHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 009850           79 VDSALKDMAIVMKQQNRAEEAIEAIKSLRSR------------------CSDQAQESLDNILLDLYKRCGRLDDQIALLK  140 (524)
Q Consensus        79 ~~~a~~~La~~~~~~g~~~eAi~~~~~al~~------------------~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~  140 (524)
                      .+..+..+|..++..|+|++|+..|++++..                  +|...  .++..+|.+|..+|++++|+..++
T Consensus        10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~nla~~~~~~~~~~~A~~~~~   87 (162)
T 3rkv_A           10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNI--PLYANMSQCYLNIGDLHEAEETSS   87 (162)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHH--HHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHH--HHHHHHHHHHHhcCcHHHHHHHHH
Confidence            3577899999999999999999999999998                  44443  678899999999999999999999


Q ss_pred             HHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH-H-HHHHHHH
Q 009850          141 HKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNN-K-MCNLGIC  218 (524)
Q Consensus       141 ~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~-~-~~~Lg~~  218 (524)
                      +++.+                          +|+++.+|+.+|.+|...|++++|+..|++++.++|++. . ...++.+
T Consensus        88 ~al~~--------------------------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~  141 (162)
T 3rkv_A           88 EVLKR--------------------------EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV  141 (162)
T ss_dssp             HHHHH--------------------------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred             HHHhc--------------------------CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            99999                          899999999999999999999999999999999999998 4 6667776


Q ss_pred             HHHcCC
Q 009850          219 LMKQGR  224 (524)
Q Consensus       219 ~~~~G~  224 (524)
                      ....++
T Consensus       142 ~~~~~~  147 (162)
T 3rkv_A          142 TERRAE  147 (162)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            655543

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.44  E-value=3.8e-12  Score=105.48  Aligned_cols=113  Identities=12%  Similarity=-0.005  Sum_probs=106.7

Q ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 009850           46 DTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDL  125 (524)
Q Consensus        46 ~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~  125 (524)
                      ...++.+|..++..|++++|+..|++++..+|++..++..+|.++...|++++|+..+++++..+|+++  .++..+|.+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~a~~   81 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWG--KGYSRKAAA   81 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccH--HHHHHHHHH
Confidence            457899999999999999999999999999999999999999999999999999999999999999987  678899999


Q ss_pred             HHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHH
Q 009850          126 YKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWAL  186 (524)
Q Consensus       126 ~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~  186 (524)
                      +...|++++|+..|+++++.                          +|++..++..++.+.
T Consensus        82 ~~~~~~~~~A~~~~~~~~~~--------------------------~~~~~~~~~~l~~~~  116 (118)
T 1elw_A           82 LEFLNRFEEAKRTYEEGLKH--------------------------EANNPQLKEGLQNME  116 (118)
T ss_dssp             HHHTTCHHHHHHHHHHHHTT--------------------------CTTCHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHHc--------------------------CCCCHHHHHHHHHhh
Confidence            99999999999999999988                          899999999888765

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.43  E-value=9.4e-13  Score=112.17  Aligned_cols=86  Identities=12%  Similarity=0.068  Sum_probs=72.0

Q ss_pred             hhhhhhhHH-HHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009850           29 SRTRSDSFH-AIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLR  107 (524)
Q Consensus        29 l~~~~~~~~-~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al  107 (524)
                      ...+...+. ++...|....+|+.+|.++...|++++|+..|+++++++|++..+++.+|.++...|++++|+..|++++
T Consensus        33 ~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al  112 (121)
T 1hxi_A           33 LAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWL  112 (121)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            333444443 5567899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCCcH
Q 009850          108 SRCSDQA  114 (524)
Q Consensus       108 ~~~p~~~  114 (524)
                      +.+|++.
T Consensus       113 ~~~P~~~  119 (121)
T 1hxi_A          113 LSQPQYE  119 (121)
T ss_dssp             C------
T ss_pred             HhCcCCC
Confidence            9999764

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.42  E-value=6.8e-12  Score=129.67  Aligned_cols=211  Identities=12%  Similarity=0.062  Sum_probs=167.9

Q ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 009850           46 DTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVD-----------------SALKDMAIVMKQQNRAEEAIEAIKSLRS  108 (524)
Q Consensus        46 ~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~-----------------~a~~~La~~~~~~g~~~eAi~~~~~al~  108 (524)
                      |.+.+..|..+...|+|++|++.|.++++..|...                 .++..+|.+|...|++++|++++.+++.
T Consensus         4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~   83 (434)
T 4b4t_Q            4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE   83 (434)
T ss_dssp             TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            34577788899999999999999999999877543                 4688999999999999999999999988


Q ss_pred             hCCCcH----HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHH
Q 009850          109 RCSDQA----QESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGW  184 (524)
Q Consensus       109 ~~p~~~----~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~  184 (524)
                      ..+...    ...+...++.++...|++++|+.++++++.....                    ....+....++.++|.
T Consensus        84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~la~  143 (434)
T 4b4t_Q           84 YMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKR--------------------EKRVFLKHSLSIKLAT  143 (434)
T ss_dssp             HHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHH--------------------SSCCSSHHHHHHHHHH
T ss_pred             HHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH--------------------hCccHHHHHHHHHHHH
Confidence            766431    1245667888888899999999999999877211                    1113445779999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhC------CCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHH
Q 009850          185 ALMQQNNYIEAEDAYRRALSIA------PDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQ  257 (524)
Q Consensus       185 ~~~~~g~~~eAi~~~~~Al~l~------P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al  257 (524)
                      +|...|+|++|+..+++++...      +.... +.++|.+|..+|++++|...|++++...+                 
T Consensus       144 ~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-----------------  206 (434)
T 4b4t_Q          144 LHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAAN-----------------  206 (434)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----------------
T ss_pred             HHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhh-----------------
Confidence            9999999999999999998752      22233 88999999999999999999997643221                 


Q ss_pred             HhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHhhcccCC
Q 009850          258 QMLKD----LESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQ  294 (524)
Q Consensus       258 ~~~p~----~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~  294 (524)
                       ..++    ....+..+|.++...|++.+|..+|..++...
T Consensus       207 -~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~  246 (434)
T 4b4t_Q          207 -SIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFESY  246 (434)
T ss_dssp             -HSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHH
T ss_pred             -cCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence             1122    13567888999999999999999998887643

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.42  E-value=1.2e-12  Score=116.09  Aligned_cols=101  Identities=14%  Similarity=0.082  Sum_probs=93.6

Q ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-------cHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Q 009850           46 DTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDR-------VDS-----ALKDMAIVMKQQNRAEEAIEAIKSLRSR----  109 (524)
Q Consensus        46 ~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~-------~~~-----a~~~La~~~~~~g~~~eAi~~~~~al~~----  109 (524)
                      ...+..+|..++..|+|++|+..|+++|+++|+       +..     +|.++|.++..+|+|++|+..|++++.+    
T Consensus        11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~   90 (159)
T 2hr2_A           11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   90 (159)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence            356889999999999999999999999999999       444     9999999999999999999999999999    


Q ss_pred             ---CCCcHHHHHH----HHHHHHHHHcCChHHHHHHHHHHHHHhhc
Q 009850          110 ---CSDQAQESLD----NILLDLYKRCGRLDDQIALLKHKLYLIQQ  148 (524)
Q Consensus       110 ---~p~~~~~~l~----~~lg~~~~~~g~~~eA~~~~~~al~l~~~  148 (524)
                         +|++.  .+|    +.+|.++..+|++++|+..|++++++.+.
T Consensus        91 ~e~~pd~~--~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~  134 (159)
T 2hr2_A           91 GELNQDEG--KLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE  134 (159)
T ss_dssp             CCTTSTHH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCchH--HHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence               99987  677    99999999999999999999999999544

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.41  E-value=4.9e-12  Score=109.75  Aligned_cols=103  Identities=12%  Similarity=0.024  Sum_probs=74.1

Q ss_pred             cCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 009850           41 KVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRV---DSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQES  117 (524)
Q Consensus        41 ~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~---~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~  117 (524)
                      ..+.....++.+|..++..|++++|+.+|+++++.+|++   ..++..+|.++...|++++|+.++++++..+|++.  .
T Consensus        23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~--~  100 (148)
T 2dba_A           23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDV--K  100 (148)
T ss_dssp             TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCH--H
T ss_pred             cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCH--H
Confidence            346667777777877777888888888888877777776   66677777777777777777777777777777665  5


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 009850          118 LDNILLDLYKRCGRLDDQIALLKHKLYL  145 (524)
Q Consensus       118 l~~~lg~~~~~~g~~~eA~~~~~~al~l  145 (524)
                      ++..+|.+|...|++++|+.+|++++.+
T Consensus       101 ~~~~~a~~~~~~~~~~~A~~~~~~al~~  128 (148)
T 2dba_A          101 ALYRRSQALEKLGRLDQAVLDLQRCVSL  128 (148)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence            5566666777777777777777777666

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.41  E-value=1.4e-12  Score=119.90  Aligned_cols=171  Identities=11%  Similarity=0.073  Sum_probs=126.8

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHH
Q 009850           90 MKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQV  169 (524)
Q Consensus        90 ~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~  169 (524)
                      +...|++++|...++.+.. +|.. ...++..+|.++...|++++|+.+|++++.+...                    .
T Consensus         2 ~~~~g~~~~A~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~--------------------~   59 (203)
T 3gw4_A            2 AFEAHDYALAERQAQALLA-HPAT-ASGARFMLGYVYAFMDRFDEARASFQALQQQAQK--------------------S   59 (203)
T ss_dssp             -----CHHHHHHHHHHHHT-STTT-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT--------------------T
T ss_pred             ccccccHHHHHHHHHHhcC-ChHH-HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH--------------------c
Confidence            3567999999996655544 4432 2378889999999999999999999999986211                    0


Q ss_pred             hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCcH----H-HHHHHHHHHHcCCHHHHHHHHHHhcccccC
Q 009850          170 SVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSI---APDNN----K-MCNLGICLMKQGRIGEAKETLRRVKPAVAD  241 (524)
Q Consensus       170 ~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l---~P~~~----~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~  241 (524)
                      ...+....++.++|.++...|++++|+.+|++++.+   .++++    . ++++|.++..+|++++|+.++++++.....
T Consensus        60 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~  139 (203)
T 3gw4_A           60 GDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQ  139 (203)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence            012344678999999999999999999999999998   45332    2 889999999999999999999975332100


Q ss_pred             CCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCC
Q 009850          242 GPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCK  297 (524)
Q Consensus       242 ~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~  297 (524)
                                     .........++.++|.++..+|++++|+..++++++.....
T Consensus       140 ---------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  180 (203)
T 3gw4_A          140 ---------------ADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAEL  180 (203)
T ss_dssp             ---------------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             ---------------ccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc
Confidence                           00001123457899999999999999999999998764433

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.40  E-value=9.7e-14  Score=146.98  Aligned_cols=134  Identities=10%  Similarity=0.002  Sum_probs=120.7

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 009850           48 PYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYK  127 (524)
Q Consensus        48 ~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~  127 (524)
                      +++.+|..++..|++++|+..|+++++.+|++..++.++|.+|..+|++++|+..|+++++++|+++  .+++.+|.+|.
T Consensus         8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~--~~~~~lg~~~~   85 (477)
T 1wao_1            8 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI--KGYYRRAASNM   85 (477)
T ss_dssp             TSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCH--HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHH
Confidence            3566778889999999999999999999999999999999999999999999999999999999997  78889999999


Q ss_pred             HcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHH--HHHcCCHHHHHHHHH-----
Q 009850          128 RCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWA--LMQQNNYIEAEDAYR-----  200 (524)
Q Consensus       128 ~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~--~~~~g~~~eAi~~~~-----  200 (524)
                      .+|++++|+..|++++++                          +|++..++.+++.+  +...|++++|+..++     
T Consensus        86 ~~g~~~eA~~~~~~al~~--------------------------~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~  139 (477)
T 1wao_1           86 ALGKFRAALRDYETVVKV--------------------------KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV  139 (477)
T ss_dssp             HHTCHHHHHHHHHHHHHH--------------------------STTCTTHHHHHHHHHHHHHHHHHCCC------CCST
T ss_pred             HcCCHHHHHHHHHHHHHh--------------------------CCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchh
Confidence            999999999999999999                          89999999999998  889999999999999     


Q ss_pred             ------HHHhhCCCc
Q 009850          201 ------RALSIAPDN  209 (524)
Q Consensus       201 ------~Al~l~P~~  209 (524)
                            +++.++|+.
T Consensus       140 ~~~~~~~al~~~~~~  154 (477)
T 1wao_1          140 VDSLDIESMTIEDEY  154 (477)
T ss_dssp             TTCCTTSSCCCCTTC
T ss_pred             Hhhhhhhhccccccc
Confidence                  888887765

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.39  E-value=9.7e-12  Score=105.66  Aligned_cols=118  Identities=11%  Similarity=-0.104  Sum_probs=102.9

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-HHHHHHHH
Q 009850           48 PYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVD---SALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQ-ESLDNILL  123 (524)
Q Consensus        48 ~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~---~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~-~~l~~~lg  123 (524)
                      +++.+|.+++..|++++|+..|++++...|++.   .+++.+|.++...|++++|+..|++++..+|++.. ..+++.+|
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la   83 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG   83 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence            488999999999999999999999999999988   89999999999999999999999999999998721 26778999


Q ss_pred             HHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 009850          124 DLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNN  191 (524)
Q Consensus       124 ~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~  191 (524)
                      .+|...|++++|+..|++++..                          .|++..+...+..+....++
T Consensus        84 ~~~~~~g~~~~A~~~~~~~~~~--------------------------~p~~~~~~~a~~~l~~l~~~  125 (129)
T 2xev_A           84 LSQYGEGKNTEAQQTLQQVATQ--------------------------YPGSDAARVAQERLQSIRLG  125 (129)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH--------------------------STTSHHHHHHHHHHHHHC--
T ss_pred             HHHHHcCCHHHHHHHHHHHHHH--------------------------CCCChHHHHHHHHHHHHHhh
Confidence            9999999999999999999998                          78877766666555444433

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.39  E-value=8.3e-12  Score=108.26  Aligned_cols=92  Identities=13%  Similarity=0.038  Sum_probs=77.2

Q ss_pred             hhhhHHHH-hcCCCC---hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009850           32 RSDSFHAI-HKVPVG---DTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLR  107 (524)
Q Consensus        32 ~~~~~~~~-~~~p~~---~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al  107 (524)
                      +...+..+ ...|..   ...|+.+|.++...|++++|+..|++++..+|++..+++.+|.++..+|++++|+.+|++++
T Consensus        47 A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al  126 (148)
T 2dba_A           47 ALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCV  126 (148)
T ss_dssp             HHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34444433 344554   78899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCCcHHHHHHHHHHHH
Q 009850          108 SRCSDQAQESLDNILLDL  125 (524)
Q Consensus       108 ~~~p~~~~~~l~~~lg~~  125 (524)
                      .++|++.  .++..++.+
T Consensus       127 ~~~p~~~--~~~~~l~~~  142 (148)
T 2dba_A          127 SLEPKNK--VFQEALRNI  142 (148)
T ss_dssp             HHCSSCH--HHHHHHHHH
T ss_pred             HcCCCcH--HHHHHHHHH
Confidence            9999886  455555554

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.38  E-value=5.2e-13  Score=134.89  Aligned_cols=153  Identities=17%  Similarity=0.131  Sum_probs=81.3

Q ss_pred             ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 009850           45 GDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLD  124 (524)
Q Consensus        45 ~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~  124 (524)
                      ....++.+|..++..|++++|+.+|++++...|++..        +...|++.++...+.           ..+++.+|.
T Consensus       178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~--------~~~~~~~~~~~~~l~-----------~~~~~nla~  238 (338)
T 2if4_A          178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM--------FQLYGKYQDMALAVK-----------NPCHLNIAA  238 (338)
T ss_dssp             HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH--------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh--------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence            3456888888888999999999999999888887652        222333444433221           135566777


Q ss_pred             HHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009850          125 LYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALS  204 (524)
Q Consensus       125 ~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~  204 (524)
                      +|..+|++++|+.+|++++++                          +|++..+|+++|.+|..+|++++|+.+|+++++
T Consensus       239 ~~~~~g~~~~A~~~~~~al~~--------------------------~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~  292 (338)
T 2if4_A          239 CLIKLKRYDEAIGHCNIVLTE--------------------------EEKNPKALFRRGKAKAELGQMDSARDDFRKAQK  292 (338)
T ss_dssp             HHHTTTCCHHHHHHHHHHHHH--------------------------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred             HHHHcCCHHHHHHHHHHHHHh--------------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            777777777777777777777                          677777777777777777777777777777777


Q ss_pred             hCCCcHH-HHHHHHHH-HHcCCHHHHHHHHHHhcccccCC
Q 009850          205 IAPDNNK-MCNLGICL-MKQGRIGEAKETLRRVKPAVADG  242 (524)
Q Consensus       205 l~P~~~~-~~~Lg~~~-~~~G~~~eA~~~~~~a~~~~~~~  242 (524)
                      ++|++.. +.+++.+. ...+..+++...|.+++...|..
T Consensus       293 l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~  332 (338)
T 2if4_A          293 YAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEG  332 (338)
T ss_dssp             ----------------------------------------
T ss_pred             HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Confidence            7777766 66677663 34456666677777765555443

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.36  E-value=6.3e-12  Score=106.16  Aligned_cols=116  Identities=9%  Similarity=0.095  Sum_probs=95.7

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHH
Q 009850           79 VDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTK  158 (524)
Q Consensus        79 ~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~  158 (524)
                      .+..++.+|.++...|++++|+.+|++++..+|.++  .++..+|.+|...|++++|+.+|++++..             
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~la~~~~~~~~~~~A~~~~~~~~~~-------------   67 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNM--TYITNQAAVYFEKGDYNKCRELCEKAIEV-------------   67 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------------
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccH--HHHHHHHHHHHHhccHHHHHHHHHHHHhh-------------
Confidence            456778888888888888888888888888888776  66778888888888888888888888877             


Q ss_pred             HHHHHhHHHHHhcCCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcC
Q 009850          159 TARSQGKKFQVSVEQEA-------TRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQG  223 (524)
Q Consensus       159 ~a~~~~~~~~~~~~p~~-------~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G  223 (524)
                                   .|.+       ..+++.+|.++...|++++|+.+|++++...|+ .. +..++.+....+
T Consensus        68 -------------~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~  126 (131)
T 1elr_A           68 -------------GRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQAEKILK  126 (131)
T ss_dssp             -------------HHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHH
T ss_pred             -------------ccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHH
Confidence                         2333       778999999999999999999999999999995 55 777877766543

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.36  E-value=3.3e-12  Score=104.89  Aligned_cols=106  Identities=11%  Similarity=0.005  Sum_probs=61.8

Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcc
Q 009850           76 GDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGK  155 (524)
Q Consensus        76 ~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~  155 (524)
                      +|++..+++.+|.++...|++++|+..|++++..+|.+.  .++..+|.++...|++++|+.+|+++++.          
T Consensus         2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~a~~~~~~~~~~~A~~~~~~a~~~----------   69 (112)
T 2kck_A            2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEES--KYWLMKGKALYNLERYEEAVDCYNYVINV----------   69 (112)
T ss_dssp             CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHT----------
T ss_pred             CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCH--HHHHHHHHHHHHccCHHHHHHHHHHHHHh----------
Confidence            345555555566666666666666666666666555554  44455555555666666666666665555          


Q ss_pred             cHHHHHHHhHHHHHhcCCC--cHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCc
Q 009850          156 RTKTARSQGKKFQVSVEQE--ATRLLGNLGWALMQQ-NNYIEAEDAYRRALSIAPDN  209 (524)
Q Consensus       156 ~~~~a~~~~~~~~~~~~p~--~~~a~~~Lg~~~~~~-g~~~eAi~~~~~Al~l~P~~  209 (524)
                                      +|.  +..+++.+|.++... |++++|+.++++++...|.+
T Consensus        70 ----------------~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           70 ----------------IEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             ----------------SCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred             ----------------CcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence                            555  555666666666666 66666666666666555543

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.36  E-value=3.8e-12  Score=104.57  Aligned_cols=106  Identities=15%  Similarity=0.144  Sum_probs=100.8

Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHH
Q 009850          172 EQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHL  250 (524)
Q Consensus       172 ~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~  250 (524)
                      +|+++.+++.+|.++...|++++|+.+|+++++.+|.+.. ++++|.++..+|++++|+.+|+                 
T Consensus         2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~-----------------   64 (112)
T 2kck_A            2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYN-----------------   64 (112)
T ss_dssp             CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHH-----------------
T ss_pred             CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHH-----------------
Confidence            6888899999999999999999999999999999999988 9999999999999999999999                 


Q ss_pred             HHHHHHHHhCCC--CHHHHHHHHHHHHHc-CCHHHHHHHHhhcccCCCCCC
Q 009850          251 KAYERAQQMLKD--LESEMMNKGGDRVEQ-SRLFDAFLGSSSIWQPQPCKD  298 (524)
Q Consensus       251 ~~~~~al~~~p~--~~~a~~~lg~~~~~~-g~~~eAi~~~~~al~~~P~~~  298 (524)
                          +++...|.  ...+++.+|.++... |++++|+..++.++...|.+.
T Consensus        65 ----~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  111 (112)
T 2kck_A           65 ----YVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHHH  111 (112)
T ss_dssp             ----HHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred             ----HHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence                77888899  999999999999999 999999999999999998764

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.36  E-value=9.2e-12  Score=134.39  Aligned_cols=163  Identities=7%  Similarity=-0.030  Sum_probs=151.8

Q ss_pred             HHHhcCCCChHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC--CHHHHHHHHH
Q 009850           37 HAIHKVPVGDTPYVRAKNVQLVDKD----------PEKAIPLFWAAINAGDRVDSALKDMAIVMKQQN--RAEEAIEAIK  104 (524)
Q Consensus        37 ~~~~~~p~~~~~~~~lg~~~~~~g~----------~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g--~~~eAi~~~~  104 (524)
                      .++...|....+|+..+.++...|+          +++|+..+.+++..+|.+..+|+.++.++...|  +++++++.+.
T Consensus        54 ~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~  133 (567)
T 1dce_A           54 QILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCA  133 (567)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHH
T ss_pred             HHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHH
Confidence            4556779999999999999999998          999999999999999999999999999999999  7799999999


Q ss_pred             HHHHhCCCcHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHH
Q 009850          105 SLRSRCSDQAQESLDNILLDLYKRCG-RLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLG  183 (524)
Q Consensus       105 ~al~~~p~~~~~~l~~~lg~~~~~~g-~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg  183 (524)
                      ++++.+|.+.  .+|...+.++...| .++++++++.++++.                          +|.+..+|+.+|
T Consensus       134 k~l~~d~~N~--~aW~~R~~~l~~l~~~~~~el~~~~~~I~~--------------------------~p~n~saW~~r~  185 (567)
T 1dce_A          134 RFLEADERNF--HCWDYRRFVAAQAAVAPAEELAFTDSLITR--------------------------NFSNYSSWHYRS  185 (567)
T ss_dssp             HHHHHCTTCH--HHHHHHHHHHHHTCCCHHHHHHHHHTTTTT--------------------------TCCCHHHHHHHH
T ss_pred             HHHhhccccc--cHHHHHHHHHHHcCCChHHHHHHHHHHHHH--------------------------CCCCccHHHHHH
Confidence            9999999997  77888899999999 899999999999988                          999999999999


Q ss_pred             HHHHHc--------------CCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHH
Q 009850          184 WALMQQ--------------NNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGE  227 (524)
Q Consensus       184 ~~~~~~--------------g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~e  227 (524)
                      .++...              +.+++|++++.+|+.++|++.. |+.++.++...+++++
T Consensus       186 ~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~  244 (567)
T 1dce_A          186 CLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV  244 (567)
T ss_dssp             HHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred             HHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence            999885              6689999999999999999998 9999999999988665

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.35  E-value=2.5e-11  Score=103.12  Aligned_cols=113  Identities=11%  Similarity=0.032  Sum_probs=98.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHH
Q 009850           81 SALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQ-ESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKT  159 (524)
Q Consensus        81 ~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~-~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~  159 (524)
                      .+++.+|.++...|++++|+..|++++..+|++.. ..+++.+|.++...|++++|+..|++++..              
T Consensus         3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~--------------   68 (129)
T 2xev_A            3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR--------------   68 (129)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--------------
Confidence            45788999999999999999999999999997742 246788899999999999999999999988              


Q ss_pred             HHHHhHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHH
Q 009850          160 ARSQGKKFQVSVEQEA---TRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICL  219 (524)
Q Consensus       160 a~~~~~~~~~~~~p~~---~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~  219 (524)
                                  +|++   +.+++.+|.++...|++++|+..|++++...|++.. ...+..+.
T Consensus        69 ------------~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~  120 (129)
T 2xev_A           69 ------------YPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQ  120 (129)
T ss_dssp             ------------CTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHH
T ss_pred             ------------CCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence                        7888   889999999999999999999999999999999877 44444333

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.35  E-value=8.8e-12  Score=105.26  Aligned_cols=118  Identities=12%  Similarity=0.011  Sum_probs=104.9

Q ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-----HHHHHH
Q 009850           46 DTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQA-----QESLDN  120 (524)
Q Consensus        46 ~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~-----~~~l~~  120 (524)
                      ...|+.+|..++..|++++|+.+|.+++..+|.+..++..+|.++...|++++|+.++++++...|.+.     ...++.
T Consensus         4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (131)
T 1elr_A            4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence            467899999999999999999999999999999999999999999999999999999999999987540     036788


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 009850          121 ILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQN  190 (524)
Q Consensus       121 ~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g  190 (524)
                      .+|.+|...|++++|+.+|++++..                          .| +...+..++.+....+
T Consensus        84 ~la~~~~~~~~~~~A~~~~~~~~~~--------------------------~~-~~~~~~~l~~~~~~~~  126 (131)
T 1elr_A           84 RIGNSYFKEEKYKDAIHFYNKSLAE--------------------------HR-TPDVLKKCQQAEKILK  126 (131)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH--------------------------CC-CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHh--------------------------CC-CHHHHHHHHHHHHHHH
Confidence            9999999999999999999999998                          66 5777788877766543

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.34  E-value=9.5e-12  Score=108.78  Aligned_cols=142  Identities=14%  Similarity=0.019  Sum_probs=106.6

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----HHH
Q 009850           47 TPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRV------DSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQ----AQE  116 (524)
Q Consensus        47 ~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~------~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~----~~~  116 (524)
                      ..+..+|.++...|++++|+.+|++++...+..      ..++..+|.++...|++++|+.++++++...+..    ...
T Consensus        10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~   89 (164)
T 3ro3_A           10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA   89 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence            457888999999999999999999988874432      2477888999999999999999999888775421    123


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 009850          117 SLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAE  196 (524)
Q Consensus       117 ~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi  196 (524)
                      .++..+|.++...|++++|+.++++++.+....                    ...+....++..+|.++...|++++|+
T Consensus        90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--------------------~~~~~~~~~~~~la~~~~~~g~~~~A~  149 (164)
T 3ro3_A           90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL--------------------KDRIGEGRACWSLGNAYTALGNHDQAM  149 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc--------------------cchHhHHHHHHHHHHHHHHccCHHHHH
Confidence            566788888888899999998888888762110                    001122567788888888888888888


Q ss_pred             HHHHHHHhhCCC
Q 009850          197 DAYRRALSIAPD  208 (524)
Q Consensus       197 ~~~~~Al~l~P~  208 (524)
                      .++++++++...
T Consensus       150 ~~~~~a~~~~~~  161 (164)
T 3ro3_A          150 HFAEKHLEISRE  161 (164)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHH
Confidence            888888876543

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.34  E-value=1.1e-11  Score=126.67  Aligned_cols=125  Identities=11%  Similarity=0.009  Sum_probs=117.7

Q ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHHH----------------cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 009850           46 DTPYVRAKNVQLVDKDPEKAIPLFWAAIN----------------AGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSR  109 (524)
Q Consensus        46 ~~~~~~lg~~~~~~g~~~~Ai~~~~~al~----------------~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~  109 (524)
                      ...|..+|..++..|++++|+..|+++++                .+|.+..++.++|.+|..+|++++|+.++++++++
T Consensus       223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  302 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI  302 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence            34689999999999999999999999999                78888999999999999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHc
Q 009850          110 CSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQ  189 (524)
Q Consensus       110 ~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~  189 (524)
                      +|+++  .+++.+|.+|..+|++++|+..|++++++                          +|++..++..++.++...
T Consensus       303 ~p~~~--~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--------------------------~P~~~~~~~~l~~~~~~~  354 (370)
T 1ihg_A          303 DPSNT--KALYRRAQGWQGLKEYDQALADLKKAQEI--------------------------APEDKAIQAELLKVKQKI  354 (370)
T ss_dssp             CTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------------CTTCHHHHHHHHHHHHHH
T ss_pred             CchhH--HHHHHHHHHHHHccCHHHHHHHHHHHHHh--------------------------CCCCHHHHHHHHHHHHHH
Confidence            99987  78899999999999999999999999999                          899999999999999999


Q ss_pred             CCHHHHHHH
Q 009850          190 NNYIEAEDA  198 (524)
Q Consensus       190 g~~~eAi~~  198 (524)
                      ++++++...
T Consensus       355 ~~~~~a~k~  363 (370)
T 1ihg_A          355 KAQKDKEKA  363 (370)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHHH
Confidence            999888754

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.33  E-value=7.5e-11  Score=116.31  Aligned_cols=168  Identities=13%  Similarity=0.001  Sum_probs=134.8

Q ss_pred             CCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----cHH
Q 009850           43 PVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGD--RVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSD-----QAQ  115 (524)
Q Consensus        43 p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p--~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~-----~~~  115 (524)
                      +....+++.+|.++...|++++|+.++.+.+..+|  ++.+++..++.++..+|+.+.|.+.++++.+.+|+     +. 
T Consensus        97 ~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~-  175 (310)
T 3mv2_B           97 QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNE-  175 (310)
T ss_dssp             CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHH-
T ss_pred             CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchH-
Confidence            35566778999999999999999999999999987  89999999999999999999999999999999983     32 


Q ss_pred             HHHHHHHHHHHHHcC--ChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCC--cHHHHHHHHHHHHHcCC
Q 009850          116 ESLDNILLDLYKRCG--RLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQE--ATRLLGNLGWALMQQNN  191 (524)
Q Consensus       116 ~~l~~~lg~~~~~~g--~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~--~~~a~~~Lg~~~~~~g~  191 (524)
                      ..+...-+.+....|  ++.+|...|+++...                          .|+  ....+++   +++.+|+
T Consensus       176 ~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--------------------------~p~~~~~~lLln---~~~~~g~  226 (310)
T 3mv2_B          176 MILNLAESYIKFATNKETATSNFYYYEELSQT--------------------------FPTWKTQLGLLN---LHLQQRN  226 (310)
T ss_dssp             HHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--------------------------SCSHHHHHHHHH---HHHHHTC
T ss_pred             HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--------------------------CCCcccHHHHHH---HHHHcCC
Confidence            122233344455556  999999999998665                          555  2344444   8999999


Q ss_pred             HHHHHHHHHHHHhh----------CCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCC
Q 009850          192 YIEAEDAYRRALSI----------APDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADG  242 (524)
Q Consensus       192 ~~eAi~~~~~Al~l----------~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~  242 (524)
                      +++|...++.+++.          +|+++. +.|++.+...+|+  +|.++++++....|+.
T Consensus       227 ~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~h  286 (310)
T 3mv2_B          227 IAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEH  286 (310)
T ss_dssp             HHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCC
Confidence            99999999988877          588988 8899999999998  7888888544444443

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.33  E-value=3e-11  Score=119.17  Aligned_cols=193  Identities=9%  Similarity=-0.023  Sum_probs=152.2

Q ss_pred             HHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 009850           65 AIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCS--DQAQESLDNILLDLYKRCGRLDDQIALLKHK  142 (524)
Q Consensus        65 Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p--~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~a  142 (524)
                      |+..|++.+...+....++..+|.++...|++++|++++.+.+..+|  .+.  .+...++.++...|+.+.|.+.++++
T Consensus        85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~l--ea~~l~vqi~L~~~r~d~A~k~l~~~  162 (310)
T 3mv2_B           85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTT--ELLLLAIEVALLNNNVSTASTIFDNY  162 (310)
T ss_dssp             CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHH--HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcH--HHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            78888888877666677788999999999999999999999999887  444  67788899999999999999999998


Q ss_pred             HHHhhccHhhhcccHHHHHHHhHHHHHhcCCC------cHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCc--HH-
Q 009850          143 LYLIQQGLAFNGKRTKTARSQGKKFQVSVEQE------ATRLLGNLGWALMQQN--NYIEAEDAYRRALSIAPDN--NK-  211 (524)
Q Consensus       143 l~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~------~~~a~~~Lg~~~~~~g--~~~eAi~~~~~Al~l~P~~--~~-  211 (524)
                      .+.                          +|+      ...+...-|++.+..|  ++.+|...|+++....|+.  .. 
T Consensus       163 ~~~--------------------------~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~l  216 (310)
T 3mv2_B          163 TNA--------------------------IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLG  216 (310)
T ss_dssp             HHH--------------------------SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHH
T ss_pred             Hhc--------------------------CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHH
Confidence            877                          662      2333444466677777  9999999999999888872  23 


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcc
Q 009850          212 MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIW  291 (524)
Q Consensus       212 ~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al  291 (524)
                      +++   ++..+|++++|...++.+...+|.-.           .--..+|+++.++.|+..+...+|+  +|.+.++++.
T Consensus       217 Lln---~~~~~g~~~eAe~~L~~l~~~~p~~~-----------~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~  280 (310)
T 3mv2_B          217 LLN---LHLQQRNIAEAQGIVELLLSDYYSVE-----------QKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLV  280 (310)
T ss_dssp             HHH---HHHHHTCHHHHHHHHHHHHSHHHHTT-----------TCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHH
T ss_pred             HHH---HHHHcCCHHHHHHHHHHHHHhccccc-----------ccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHH
Confidence            444   89999999999999984322111000           0001158899999999999999998  8899999999


Q ss_pred             cCCCCCCCcc
Q 009850          292 QPQPCKDHIL  301 (524)
Q Consensus       292 ~~~P~~~~~l  301 (524)
                      +.+|.++-+.
T Consensus       281 ~~~P~hp~i~  290 (310)
T 3mv2_B          281 KLDHEHAFIK  290 (310)
T ss_dssp             HTTCCCHHHH
T ss_pred             HhCCCChHHH
Confidence            9999987644

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.33  E-value=2e-12  Score=136.82  Aligned_cols=135  Identities=14%  Similarity=0.086  Sum_probs=118.4

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 009850          118 LDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAED  197 (524)
Q Consensus       118 l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~  197 (524)
                      .+..+|..+...|++++|+..|++++++                          +|+++.+++++|.+|..+|++++|+.
T Consensus         8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~--------------------------~p~~~~~~~~lg~~~~~~g~~~~A~~   61 (477)
T 1wao_1            8 ELKTQANDYFKAKDYENAIKFYSQAIEL--------------------------NPSNAIYYGNRSLAYLRTECYGYALG   61 (477)
T ss_dssp             TSSSSSSSTTTTTCHHHHHHHHHHHHHH--------------------------CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHh--------------------------CCccHHHHHHHHHHHHHhcCHHHHHH
Confidence            3445677788899999999999999999                          89999999999999999999999999


Q ss_pred             HHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--H
Q 009850          198 AYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGD--R  274 (524)
Q Consensus       198 ~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~--~  274 (524)
                      +|+++++++|++.. ++++|.+|..+|++++|+..|+                     ++++..|+...++.+++.+  +
T Consensus        62 ~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~---------------------~al~~~p~~~~~~~~l~~~~~~  120 (477)
T 1wao_1           62 DATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYE---------------------TVVKVKPHDKDAKMKYQECNKI  120 (477)
T ss_dssp             HHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHH---------------------HHHHHSTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH---------------------HHHHhCCCCHHHHHHHHHHHHH
Confidence            99999999999999 9999999999999999999999                     7788899999999999988  8


Q ss_pred             HHcCCHHHHHHHHh-----------hcccCCCCCCC
Q 009850          275 VEQSRLFDAFLGSS-----------SIWQPQPCKDH  299 (524)
Q Consensus       275 ~~~g~~~eAi~~~~-----------~al~~~P~~~~  299 (524)
                      ..+|++++|+..++           +++..+|....
T Consensus       121 ~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~  156 (477)
T 1wao_1          121 VKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSG  156 (477)
T ss_dssp             HHHHHHCCC------CCSTTTCCTTSSCCCCTTCCS
T ss_pred             HHHHHHHHHhccccccchhHhhhhhhhccccccccc
Confidence            89999999999999           77777776544

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.32  E-value=1.4e-11  Score=125.98  Aligned_cols=124  Identities=14%  Similarity=0.060  Sum_probs=113.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----------------hCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 009850           80 DSALKDMAIVMKQQNRAEEAIEAIKSLRS----------------RCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKL  143 (524)
Q Consensus        80 ~~a~~~La~~~~~~g~~~eAi~~~~~al~----------------~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al  143 (524)
                      ...+..+|.++...|++++|+..|+++++                .+|...  .++..+|.+|..+|++++|+.++++++
T Consensus       223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~--~~~~nla~~~~~~g~~~~A~~~~~~al  300 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVAL--SCVLNIGACKLKMSDWQGAVDSCLEAL  300 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHH--HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHH--HHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            45688999999999999999999999998                444444  788899999999999999999999999


Q ss_pred             HHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHc
Q 009850          144 YLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQ  222 (524)
Q Consensus       144 ~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~  222 (524)
                      ++                          +|+++.+++++|.+|..+|++++|+..|+++++++|++.. +..++.++..+
T Consensus       301 ~~--------------------------~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~  354 (370)
T 1ihg_A          301 EI--------------------------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKI  354 (370)
T ss_dssp             TT--------------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             Hh--------------------------CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            98                          8999999999999999999999999999999999999998 89999999999


Q ss_pred             CCHHHHHHH
Q 009850          223 GRIGEAKET  231 (524)
Q Consensus       223 G~~~eA~~~  231 (524)
                      ++++++...
T Consensus       355 ~~~~~a~k~  363 (370)
T 1ihg_A          355 KAQKDKEKA  363 (370)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHHH
Confidence            988887654

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.31  E-value=2e-12  Score=130.56  Aligned_cols=143  Identities=15%  Similarity=0.152  Sum_probs=97.4

Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhccc
Q 009850           77 DRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKR  156 (524)
Q Consensus        77 p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~  156 (524)
                      +.....+..+|.+++..|++++|+..|++++...|++..          +...|++.++...+.                
T Consensus       176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~----------~~~~~~~~~~~~~l~----------------  229 (338)
T 2if4_A          176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM----------FQLYGKYQDMALAVK----------------  229 (338)
T ss_dssp             HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH----------HTCCHHHHHHHHHHH----------------
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh----------hhhcccHHHHHHHHH----------------
Confidence            344677899999999999999999999999999987641          112344444433221                


Q ss_pred             HHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHh
Q 009850          157 TKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRV  235 (524)
Q Consensus       157 ~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a  235 (524)
                                         ..+|+++|.+|..+|+|++|+.+|+++++++|++.. |+++|.+|..+|++++|+.+|+++
T Consensus       230 -------------------~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~a  290 (338)
T 2if4_A          230 -------------------NPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKA  290 (338)
T ss_dssp             -------------------THHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred             -------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence                               127899999999999999999999999999999999 999999999999999999999999


Q ss_pred             cccccCCC--------------cCHHHHHHHHHHHHHhCCCCH
Q 009850          236 KPAVADGP--------------RGVDSHLKAYERAQQMLKDLE  264 (524)
Q Consensus       236 ~~~~~~~~--------------~~~~~A~~~~~~al~~~p~~~  264 (524)
                      +...|...              ...+.+...|.+++...|+..
T Consensus       291 l~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~  333 (338)
T 2if4_A          291 QKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGG  333 (338)
T ss_dssp             TC-----------------------------------------
T ss_pred             HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC
Confidence            87766654              223445566777777777654

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.27  E-value=6.8e-12  Score=105.65  Aligned_cols=86  Identities=14%  Similarity=0.179  Sum_probs=77.7

Q ss_pred             HcCChHHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHH
Q 009850           58 VDKDPEKAIPLFWAAINA---GDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDD  134 (524)
Q Consensus        58 ~~g~~~~Ai~~~~~al~~---~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~e  134 (524)
                      ..|++++|+.+|++++..   +|++..+++.+|.+|..+|++++|+.+|+++++.+|+++  .++..+|.++...|++++
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~l~~~~~~~g~~~~   79 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQ--ALRVFYAMVLYNLGRYEQ   79 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHTCHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch--HHHHHHHHHHHHcCCHHH
Confidence            468999999999999999   689999999999999999999999999999999999997  788899999999999999


Q ss_pred             HHHHHHHHHHH
Q 009850          135 QIALLKHKLYL  145 (524)
Q Consensus       135 A~~~~~~al~l  145 (524)
                      |+..|++++..
T Consensus        80 A~~~~~~al~~   90 (117)
T 3k9i_A           80 GVELLLKIIAE   90 (117)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999999998

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.26  E-value=1.3e-11  Score=109.27  Aligned_cols=81  Identities=15%  Similarity=0.171  Sum_probs=71.7

Q ss_pred             HcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCH----------HHHHH
Q 009850          128 RCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNY----------IEAED  197 (524)
Q Consensus       128 ~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~----------~eAi~  197 (524)
                      +.+++++|+..+++++++                          +|+++.+|+++|.++...+++          ++|+.
T Consensus        14 r~~~feeA~~~~~~Ai~l--------------------------~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~   67 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKS--------------------------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAIT   67 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHH--------------------------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHH--------------------------CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHH
Confidence            557899999999999999                          999999999999999999875          59999


Q ss_pred             HHHHHHhhCCCcHH-HHHHHHHHHHcC-----------CHHHHHHHHHH
Q 009850          198 AYRRALSIAPDNNK-MCNLGICLMKQG-----------RIGEAKETLRR  234 (524)
Q Consensus       198 ~~~~Al~l~P~~~~-~~~Lg~~~~~~G-----------~~~eA~~~~~~  234 (524)
                      .|++|++++|++.. |+++|.+|..+|           ++++|+.+|++
T Consensus        68 ~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~k  116 (158)
T 1zu2_A           68 KFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQ  116 (158)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHH
Confidence            99999999999999 999999999986           55555555553

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.25  E-value=1.1e-10  Score=101.97  Aligned_cols=137  Identities=17%  Similarity=0.107  Sum_probs=111.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcc
Q 009850           80 DSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQ----AQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGK  155 (524)
Q Consensus        80 ~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~----~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~  155 (524)
                      ..++..+|.++...|++++|+.++++++...+..    ....++..+|.++...|++++|+.++++++.+.....     
T Consensus         9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~-----   83 (164)
T 3ro3_A            9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK-----   83 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-----
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC-----
Confidence            4678899999999999999999999999886532    1235778899999999999999999999998732100     


Q ss_pred             cHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---c---HH-HHHHHHHHHHcCCHHHH
Q 009850          156 RTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPD---N---NK-MCNLGICLMKQGRIGEA  228 (524)
Q Consensus       156 ~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~---~---~~-~~~Lg~~~~~~G~~~eA  228 (524)
                                     ..+....++.++|.++...|++++|+.++++++.+.+.   .   .. +.++|.++..+|++++|
T Consensus        84 ---------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  148 (164)
T 3ro3_A           84 ---------------DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA  148 (164)
T ss_dssp             ---------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             ---------------CcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHH
Confidence                           00112568899999999999999999999999987432   1   22 78899999999999999


Q ss_pred             HHHHHHhc
Q 009850          229 KETLRRVK  236 (524)
Q Consensus       229 ~~~~~~a~  236 (524)
                      +.++++++
T Consensus       149 ~~~~~~a~  156 (164)
T 3ro3_A          149 MHFAEKHL  156 (164)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999764

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.25  E-value=2.1e-11  Score=107.93  Aligned_cols=103  Identities=14%  Similarity=0.079  Sum_probs=87.2

Q ss_pred             HHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHH
Q 009850           57 LVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQI  136 (524)
Q Consensus        57 ~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~  136 (524)
                      -+.+.|++|+..|+++++++|+++++|+++|.++..+++++.+....+                          .+++|+
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~--------------------------~~~eAi   66 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQ--------------------------MIQEAI   66 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHH--------------------------HHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHh--------------------------HHHHHH
Confidence            345677888888888888888888888888888888777765554321                          378999


Q ss_pred             HHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhh
Q 009850          137 ALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQN-----------NYIEAEDAYRRALSI  205 (524)
Q Consensus       137 ~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g-----------~~~eAi~~~~~Al~l  205 (524)
                      ..|++++++                          +|++..+|+++|.+|..+|           ++++|+.+|++|+++
T Consensus        67 ~~le~AL~l--------------------------dP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l  120 (158)
T 1zu2_A           67 TKFEEALLI--------------------------DPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE  120 (158)
T ss_dssp             HHHHHHHHH--------------------------CTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHh--------------------------CcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence            999999999                          9999999999999999885           899999999999999


Q ss_pred             CCCcHH
Q 009850          206 APDNNK  211 (524)
Q Consensus       206 ~P~~~~  211 (524)
                      +|++..
T Consensus       121 ~P~~~~  126 (158)
T 1zu2_A          121 QPDNTH  126 (158)
T ss_dssp             CTTCHH
T ss_pred             CCCCHH
Confidence            999876

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.25  E-value=1.1e-11  Score=104.39  Aligned_cols=92  Identities=12%  Similarity=0.058  Sum_probs=80.3

Q ss_pred             HcCCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHH
Q 009850           92 QQNRAEEAIEAIKSLRSRC---SDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQ  168 (524)
Q Consensus        92 ~~g~~~eAi~~~~~al~~~---p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~  168 (524)
                      .+|++++|+.+|+++++..   |++.  .++..+|.+|...|++++|+.+|++++++                       
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~--~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----------------------   56 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLA--ECYLGLGSTFRTLGEYRKAEAVLANGVKQ-----------------------   56 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------------
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----------------------
Confidence            4689999999999999994   5554  78889999999999999999999999998                       


Q ss_pred             HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q 009850          169 VSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK  211 (524)
Q Consensus       169 ~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~  211 (524)
                         +|+++.+++++|.++...|++++|+..|++++...|+++.
T Consensus        57 ---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~   96 (117)
T 3k9i_A           57 ---FPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDET   96 (117)
T ss_dssp             ---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHH
T ss_pred             ---CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Confidence               8999999999999999999999999999999999999887

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.24  E-value=7e-10  Score=126.58  Aligned_cols=223  Identities=11%  Similarity=0.076  Sum_probs=143.6

Q ss_pred             ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 009850           45 GDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDR----VDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDN  120 (524)
Q Consensus        45 ~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~----~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~  120 (524)
                      +++---.....|+..|.+.+|+++|++++ ..|.    +...-..++.+..+. +..+..++..+.-..+        ..
T Consensus       984 ~PeeVs~~vKaf~~aglp~EaieLLEKiv-l~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d--------~~ 1053 (1630)
T 1xi4_A          984 DPEEVSVTVKAFMTADLPNELIELLEKIV-LDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD--------AP 1053 (1630)
T ss_pred             CHHHhHHHHHHHHhCCCHHHHHHHHHHHH-cCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc--------HH
Confidence            44445566778889999999999999999 4444    333333333333333 3333333333322111        12


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 009850          121 ILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYR  200 (524)
Q Consensus       121 ~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~  200 (524)
                      .+|.++...|.+++|..+|+++-.......    ...+....+.++.+.....+.+.+|+.+|.++...|++++|+.+|.
T Consensus      1054 eIA~Iai~lglyEEAf~IYkKa~~~~~A~~----VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYi 1129 (1630)
T 1xi4_A         1054 DIANIAISNELFEEAFAIFRKFDVNTSAVQ----VLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYI 1129 (1630)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHcCCHHHHHH----HHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence            356777788888888888888642211100    1112223333333334355778899999999999999999999997


Q ss_pred             HHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCC------------------------------------
Q 009850          201 RALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGP------------------------------------  243 (524)
Q Consensus       201 ~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~------------------------------------  243 (524)
                      ++     +++. |..+|.++.+.|++++|+++|..+....++..                                    
T Consensus      1130 KA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~ 1204 (1630)
T 1xi4_A         1130 KA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDR 1204 (1630)
T ss_pred             hc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHH
Confidence            75     6666 88899999999999999999987654443221                                    


Q ss_pred             ----cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCC
Q 009850          244 ----RGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQ  294 (524)
Q Consensus       244 ----~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~  294 (524)
                          +.+++|+..|.++        ..|..+|.++..+|++++|+.+++++....
T Consensus      1205 le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA~n~~ 1251 (1630)
T 1xi4_A         1205 CYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKANSTR 1251 (1630)
T ss_pred             HHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHH
Confidence                4455566666654        467788888888888888888888875443

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.16  E-value=2.2e-11  Score=125.37  Aligned_cols=251  Identities=12%  Similarity=0.047  Sum_probs=88.1

Q ss_pred             CCCCCCCCCCCccchhhhhhhHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC
Q 009850           15 TKSAPSSPAKPLGVSRTRSDSFHAIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQN   94 (524)
Q Consensus        15 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g   94 (524)
                      .|+..+......+.++.+.+.|..    ..+...|...+..+...|++++|+.+++.+++..++ +.....++.+|.++|
T Consensus        34 vWs~La~A~l~~g~~~eAIdsfik----a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~-~~i~~~Li~~Y~Klg  108 (449)
T 1b89_A           34 VWSQLAKAQLQKGMVKEAIDSYIK----ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALAKTN  108 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHc----CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHhC
Confidence            555555566666677777777743    235557999999999999999999999998885444 677778888899999


Q ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhc-ccHHHHHHHhHHHHHhcCC
Q 009850           95 RAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNG-KRTKTARSQGKKFQVSVEQ  173 (524)
Q Consensus        95 ~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~-~~~~~a~~~~~~~~~~~~p  173 (524)
                      +++++.++++.     |+.   ..+..+|..+...|+|++|..+|.++-.....+.++.. +.++.+....+..      
T Consensus       109 ~l~e~e~f~~~-----pn~---~a~~~IGd~~~~~g~yeeA~~~Y~~a~n~~~LA~~L~~Lg~yq~AVea~~KA------  174 (449)
T 1b89_A          109 RLAELEEFING-----PNN---AHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA------  174 (449)
T ss_dssp             CHHHHTTTTTC-----C-------------------CTTTHHHHHHHTTCHHHHHHHHHTTTCHHHHHHHHHHH------
T ss_pred             CHHHHHHHHcC-----CcH---HHHHHHHHHHHHcCCHHHHHHHHHHhhhHHHHHHHHHHhccHHHHHHHHHHc------
Confidence            99888877752     433   46778888888888888888888866322222222222 2333333322221      


Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHcCCHHHHHHHHHHhcccccCCC----------
Q 009850          174 EATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVADGP----------  243 (524)
Q Consensus       174 ~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~----------  243 (524)
                      +++.+|..++.++...|+|+.|..+... +...|++  ...+..+|.+.|++++|+.++++++...+...          
T Consensus       175 ~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~--l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~  251 (449)
T 1b89_A          175 NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADE--LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILY  251 (449)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHH
T ss_pred             CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhh--HHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence            3455666666666666666666555443 1122221  33455666666666666666666655443221          


Q ss_pred             -----cCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHcCCHHHHHHHH
Q 009850          244 -----RGVDSHLKAYERAQQMLK-----DLESEMMNKGGDRVEQSRLFDAFLGS  287 (524)
Q Consensus       244 -----~~~~~A~~~~~~al~~~p-----~~~~a~~~lg~~~~~~g~~~eAi~~~  287 (524)
                           +.+.++++.|...+.+.|     +.+..|..+..+|...++++.|+...
T Consensus       252 ~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm  305 (449)
T 1b89_A          252 SKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM  305 (449)
T ss_dssp             HTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Confidence                 333445555555555555     45556666777777777777766643

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.12  E-value=1.1e-10  Score=96.14  Aligned_cols=95  Identities=15%  Similarity=0.146  Sum_probs=85.4

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHH
Q 009850          175 ATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAY  253 (524)
Q Consensus       175 ~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~  253 (524)
                      ++.+++.+|.++...|+|++|+..|++++.++|+++. |+++|.++..+|++++|+..|+                    
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~--------------------   62 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQ--------------------   62 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH--------------------
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHH--------------------
Confidence            4678999999999999999999999999999999999 9999999999999999999999                    


Q ss_pred             HHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHhhc
Q 009850          254 ERAQQMLKDL------ESEMMNKGGDRVEQSRLFDAFLGSSSI  290 (524)
Q Consensus       254 ~~al~~~p~~------~~a~~~lg~~~~~~g~~~eAi~~~~~a  290 (524)
                       +++...|+.      ..+++.+|.++...|++++|+..++++
T Consensus        63 -~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  104 (111)
T 2l6j_A           63 -QGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDEL  104 (111)
T ss_dssp             -HHHTSCSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred             -HHHHhCCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHHh
Confidence             677777877      788999999999999887776665544

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.10  E-value=8.6e-11  Score=96.75  Aligned_cols=94  Identities=11%  Similarity=0.097  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 009850          117 SLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAE  196 (524)
Q Consensus       117 ~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi  196 (524)
                      ..+..+|.++...|++++|+..|++++++                          +|+++.+++++|.++...|++++|+
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------------------------~p~~~~~~~~lg~~~~~~g~~~~A~   58 (111)
T 2l6j_A            5 EKQKEQGNSLFKQGLYREAVHCYDQLITA--------------------------QPQNPVGYSNKAMALIKLGEYTQAI   58 (111)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------------------------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------------------------CCCCHHHHHHHHHHHHHhcCHHHHH
Confidence            56788999999999999999999999999                          8999999999999999999999999


Q ss_pred             HHHHHHHhhCCCc------HH-HHHHHHHHHHcCCHHHHHHHHHHhc
Q 009850          197 DAYRRALSIAPDN------NK-MCNLGICLMKQGRIGEAKETLRRVK  236 (524)
Q Consensus       197 ~~~~~Al~l~P~~------~~-~~~Lg~~~~~~G~~~eA~~~~~~a~  236 (524)
                      ..|++++.++|++      .. ++.+|.++..+|++++|+..++++.
T Consensus        59 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  105 (111)
T 2l6j_A           59 QMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDELP  105 (111)
T ss_dssp             HHHHHHHTSCSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSSCS
T ss_pred             HHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHHhH
Confidence            9999999999998      66 8899999999999888887776543

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.05  E-value=4.5e-10  Score=93.76  Aligned_cols=79  Identities=8%  Similarity=-0.059  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 009850           65 AIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLY  144 (524)
Q Consensus        65 Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~  144 (524)
                      |+..|++++..+|+++.+++.+|.++...|++++|+..|++++..+|++.  ..+..+|.+|...|++++|+..|++++.
T Consensus         4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~   81 (115)
T 2kat_A            4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYS--VAWKWLGKTLQGQGDRAGARQAWESGLA   81 (115)
T ss_dssp             HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcH--HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            44555555555555555555555555555555555555555555555443  3444445555555555555555555544


Q ss_pred             H
Q 009850          145 L  145 (524)
Q Consensus       145 l  145 (524)
                      +
T Consensus        82 ~   82 (115)
T 2kat_A           82 A   82 (115)
T ss_dssp             H
T ss_pred             h
Confidence            4

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.04  E-value=1.3e-09  Score=90.94  Aligned_cols=77  Identities=13%  Similarity=0.032  Sum_probs=72.3

Q ss_pred             HHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 009850           37 HAIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQ  113 (524)
Q Consensus        37 ~~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~  113 (524)
                      .++...|....+|+.+|.++...|++++|+..|++++..+|++..+++.+|.++..+|++++|+..|++++.+.|..
T Consensus        10 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~   86 (115)
T 2kat_A           10 AMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSR   86 (115)
T ss_dssp             HHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence            35567788999999999999999999999999999999999999999999999999999999999999999998854

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.03  E-value=2.6e-09  Score=84.35  Aligned_cols=85  Identities=31%  Similarity=0.404  Sum_probs=79.1

Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHH
Q 009850          173 QEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLK  251 (524)
Q Consensus       173 p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~  251 (524)
                      |.++.+++.+|.++...|++++|+.+|++++..+|++.. ++++|.++...|++++|+.+|+                  
T Consensus         6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~------------------   67 (91)
T 1na3_A            6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQ------------------   67 (91)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH------------------
T ss_pred             cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHH------------------
Confidence            346789999999999999999999999999999999998 9999999999999999999999                  


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 009850          252 AYERAQQMLKDLESEMMNKGGDRVEQS  278 (524)
Q Consensus       252 ~~~~al~~~p~~~~a~~~lg~~~~~~g  278 (524)
                         +++...|+...++.++|.++..+|
T Consensus        68 ---~a~~~~p~~~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           68 ---KALELDPNNAEAKQNLGNAKQKQG   91 (91)
T ss_dssp             ---HHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             ---HHHhcCCCCHHHHHHHHHHHHhcC
Confidence               788889999999999999988765

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.03  E-value=8.3e-09  Score=113.12  Aligned_cols=221  Identities=10%  Similarity=-0.010  Sum_probs=159.4

Q ss_pred             HHhcCCCChHHHHHHHHHHHHcCChHHHH-HHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------
Q 009850           38 AIHKVPVGDTPYVRAKNVQLVDKDPEKAI-PLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRC------  110 (524)
Q Consensus        38 ~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai-~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~------  110 (524)
                      ++..+|..++.|+..+......|+.++|. ..|.+++...|.+...|..++.+....|++++|...|++++..-      
T Consensus       335 aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~  414 (679)
T 4e6h_A          335 AAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAA  414 (679)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhh
Confidence            55667777788888888777778877776 88888888788777777778888888888888888888777642      


Q ss_pred             -----CCc---------HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcH
Q 009850          111 -----SDQ---------AQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEAT  176 (524)
Q Consensus       111 -----p~~---------~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~  176 (524)
                           |.+         ....+|..++.+..+.|..+.|...|.+|++..                         .+...
T Consensus       415 ~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~-------------------------~~~~~  469 (679)
T 4e6h_A          415 LMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK-------------------------KLVTP  469 (679)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG-------------------------GGSCT
T ss_pred             hhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-------------------------CCCCh
Confidence                 321         112456666666677777788888887776540                         11224


Q ss_pred             HHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHH
Q 009850          177 RLLGNLGWALMQQN-NYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYE  254 (524)
Q Consensus       177 ~a~~~Lg~~~~~~g-~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~  254 (524)
                      .+|...+.+....+ +++.|...|+.+++..|+++. |...+......|+.+.|...|++++...+..            
T Consensus       470 ~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~------------  537 (679)
T 4e6h_A          470 DIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDS------------  537 (679)
T ss_dssp             HHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSST------------
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCH------------
Confidence            56666666666654 489999999999999998888 7778888888899998888888554433210            


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCcc
Q 009850          255 RAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL  301 (524)
Q Consensus       255 ~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~l  301 (524)
                            ......|......-...|+.+.+...++++.+..|.++.+.
T Consensus       538 ------~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~~  578 (679)
T 4e6h_A          538 ------HLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKLE  578 (679)
T ss_dssp             ------THHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHHH
T ss_pred             ------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHHH
Confidence                  02334566666677788999999999999999999876643

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.00  E-value=4.6e-09  Score=82.90  Aligned_cols=84  Identities=17%  Similarity=0.145  Sum_probs=77.3

Q ss_pred             ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 009850           45 GDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLD  124 (524)
Q Consensus        45 ~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~  124 (524)
                      ....++.+|.++...|++++|+.+|++++..+|++..+++.+|.++...|++++|+.+|++++..+|++.  .++..+|.
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~--~~~~~l~~   85 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA--EAKQNLGN   85 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCH--HHHHHHHH
Confidence            3567899999999999999999999999999999999999999999999999999999999999999987  67788888


Q ss_pred             HHHHcC
Q 009850          125 LYKRCG  130 (524)
Q Consensus       125 ~~~~~g  130 (524)
                      ++...|
T Consensus        86 ~~~~~g   91 (91)
T 1na3_A           86 AKQKQG   91 (91)
T ss_dssp             HHHHHC
T ss_pred             HHHhcC
Confidence            877654

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.98  E-value=2.5e-09  Score=110.32  Aligned_cols=171  Identities=10%  Similarity=-0.031  Sum_probs=138.4

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----cHHH
Q 009850           47 TPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVD------SALKDMAIVMKQQNRAEEAIEAIKSLRSRCSD----QAQE  116 (524)
Q Consensus        47 ~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~------~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~----~~~~  116 (524)
                      .++..+|.+|...|++++|+.+|.+++...+...      .+...+|.++...|++++|+.++++++...+.    ..+.
T Consensus        56 ~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  135 (434)
T 4b4t_Q           56 TSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKH  135 (434)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHH
Confidence            3578999999999999999999999998754432      24557888888999999999999998876542    2335


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 009850          117 SLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAE  196 (524)
Q Consensus       117 ~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi  196 (524)
                      .+...+|.+|...|+|++|+..+++++.....                    ....+....++..+|.+|...|+|++|.
T Consensus       136 ~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~A~  195 (434)
T 4b4t_Q          136 SLSIKLATLHYQKKQYKDSLALINDLLREFKK--------------------LDDKPSLVDVHLLESKVYHKLRNLAKSK  195 (434)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT--------------------SSCSTHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHccChHHHHHHHHHHHHHHHh--------------------cccchhHHHHHHHHHHHHHHhCcHHHHH
Confidence            78889999999999999999999998876211                    0112445789999999999999999999


Q ss_pred             HHHHHHHhhCC---CcH----H-HHHHHHHHHHcCCHHHHHHHHHHhcc
Q 009850          197 DAYRRALSIAP---DNN----K-MCNLGICLMKQGRIGEAKETLRRVKP  237 (524)
Q Consensus       197 ~~~~~Al~l~P---~~~----~-~~~Lg~~~~~~G~~~eA~~~~~~a~~  237 (524)
                      ..|++++.+.+   +..    . +..+|..+...|++.+|..+|.++..
T Consensus       196 ~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~  244 (434)
T 4b4t_Q          196 ASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE  244 (434)
T ss_dssp             HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            99999998643   221    2 67889999999999999999997643

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.97  E-value=7.4e-09  Score=109.34  Aligned_cols=134  Identities=6%  Similarity=-0.026  Sum_probs=109.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC-----CCcHH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHH
Q 009850           85 DMAIVMKQQNRAEEAIEAIKSLRSRC-----SDQAQ-ESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTK  158 (524)
Q Consensus        85 ~La~~~~~~g~~~eAi~~~~~al~~~-----p~~~~-~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~  158 (524)
                      ..+..+..+|+|++|+..+++++++.     ++++. ...++.+|.+|..+|+|++|+.++++++.+....+.-      
T Consensus       314 e~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~------  387 (490)
T 3n71_A          314 EKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHH------  387 (490)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCT------
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCC------
Confidence            34556778999999999999999864     34443 4678899999999999999999999999883211110      


Q ss_pred             HHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCcHH----HHHHHHHHHHcCCHHHHH
Q 009850          159 TARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSI-----APDNNK----MCNLGICLMKQGRIGEAK  229 (524)
Q Consensus       159 ~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l-----~P~~~~----~~~Lg~~~~~~G~~~eA~  229 (524)
                                  ..|+-+..+++||.+|..+|+|++|+..|++|+.+     .|+++.    ..+++.++.++|.+.+|.
T Consensus       388 ------------~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae  455 (490)
T 3n71_A          388 ------------NNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNE  455 (490)
T ss_dssp             ------------TCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ------------CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence                        03445678999999999999999999999999974     688766    678999999999999999


Q ss_pred             HHHHHhc
Q 009850          230 ETLRRVK  236 (524)
Q Consensus       230 ~~~~~a~  236 (524)
                      ..|.++.
T Consensus       456 ~~~~~~~  462 (490)
T 3n71_A          456 FMYHKMR  462 (490)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999763

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.95  E-value=6.6e-09  Score=109.73  Aligned_cols=134  Identities=12%  Similarity=0.007  Sum_probs=110.4

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHc-----CCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCcHH-HH
Q 009850           52 AKNVQLVDKDPEKAIPLFWAAINA-----GDRV---DSALKDMAIVMKQQNRAEEAIEAIKSLRSRC-----SDQAQ-ES  117 (524)
Q Consensus        52 lg~~~~~~g~~~~Ai~~~~~al~~-----~p~~---~~a~~~La~~~~~~g~~~eAi~~~~~al~~~-----p~~~~-~~  117 (524)
                      .+..+..+|+|++|+.+|++++.+     .|++   ..++.+||.+|..+|+|++|+.++++++.+.     |+++. ..
T Consensus       315 ~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~  394 (490)
T 3n71_A          315 KIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGM  394 (490)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence            344567899999999999999985     3444   5668899999999999999999999998863     45543 46


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHH
Q 009850          118 LDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEA---TRLLGNLGWALMQQNNYIE  194 (524)
Q Consensus       118 l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~---~~a~~~Lg~~~~~~g~~~e  194 (524)
                      .++.||.+|..+|++++|+.+|++++.+..                     ....|++   .....+++.++..++.|++
T Consensus       395 ~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~---------------------~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~  453 (490)
T 3n71_A          395 AVMRAGLTNWHAGHIEVGHGMICKAYAILL---------------------VTHGPSHPITKDLEAMRMQTEMELRMFRQ  453 (490)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---------------------HHTCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHH---------------------HHhCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence            778999999999999999999999998832                     2223444   5677899999999999999


Q ss_pred             HHHHHHHHHhhC
Q 009850          195 AEDAYRRALSIA  206 (524)
Q Consensus       195 Ai~~~~~Al~l~  206 (524)
                      |...|+++.+..
T Consensus       454 ae~~~~~~~~~~  465 (490)
T 3n71_A          454 NEFMYHKMREAA  465 (490)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999987644

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.95  E-value=2e-09  Score=87.89  Aligned_cols=72  Identities=11%  Similarity=0.165  Sum_probs=63.8

Q ss_pred             CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 009850           42 VPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQ  113 (524)
Q Consensus        42 ~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~  113 (524)
                      .|..+.+|+.+|.+++..|++++|+..|+++++.+|+++.+|+.+|.+|..+|++++|+..|++++.+.|..
T Consensus         3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~   74 (100)
T 3ma5_A            3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE   74 (100)
T ss_dssp             --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence            466778899999999999999999999999999999999999999999999999999999999999887643

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=98.94  E-value=3.7e-08  Score=107.96  Aligned_cols=196  Identities=9%  Similarity=-0.046  Sum_probs=159.5

Q ss_pred             HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 009850           63 EKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAI-EAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKH  141 (524)
Q Consensus        63 ~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi-~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~  141 (524)
                      +.....|++++...|.+++.|+..+..+...|+.++|. ..|++++...|.+.  .++..++.+....|++++|..+|++
T Consensus       326 ~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~--~Lwl~~a~~ee~~~~~e~aR~iyek  403 (679)
T 4e6h_A          326 ARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSA--VLAFSLSEQYELNTKIPEIETTILS  403 (679)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            45678899999999999999999999999999999997 99999999999886  6788889999999999999999999


Q ss_pred             HHHHhhccHhhhcccHHHHHHHhHHHHHhcCC-----------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCc
Q 009850          142 KLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQ-----------EATRLLGNLGWALMQQNNYIEAEDAYRRALSI-APDN  209 (524)
Q Consensus       142 al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p-----------~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l-~P~~  209 (524)
                      ++.........              . ....|           ....+|..++.+..+.|..+.|...|.+|++. .+..
T Consensus       404 ~l~~l~~~~~~--------------~-~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~  468 (679)
T 4e6h_A          404 CIDRIHLDLAA--------------L-MEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVT  468 (679)
T ss_dssp             HHHHHHHHHHH--------------H-HHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSC
T ss_pred             HHHHHHHHhhh--------------h-hhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCC
Confidence            98752110000              0 00013           23568999999999999999999999999987 3333


Q ss_pred             HH-HHHHHHHHHHcCC-HHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 009850          210 NK-MCNLGICLMKQGR-IGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGS  287 (524)
Q Consensus       210 ~~-~~~Lg~~~~~~G~-~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~  287 (524)
                      .. |...|....+.|+ ++.|...|+                     ++++..|+.+..+...+......|+.+.|...|
T Consensus       469 ~~lyi~~A~lE~~~~~d~e~Ar~ife---------------------~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lf  527 (679)
T 4e6h_A          469 PDIYLENAYIEYHISKDTKTACKVLE---------------------LGLKYFATDGEYINKYLDFLIYVNEESQVKSLF  527 (679)
T ss_dssp             THHHHHHHHHHHTTTSCCHHHHHHHH---------------------HHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhCCCHHHHHHHHH---------------------HHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHH
Confidence            34 6666666555544 788888888                     777888889988888898888999999999999


Q ss_pred             hhcccCCCC
Q 009850          288 SSIWQPQPC  296 (524)
Q Consensus       288 ~~al~~~P~  296 (524)
                      ++++...|.
T Consensus       528 eral~~~~~  536 (679)
T 4e6h_A          528 ESSIDKISD  536 (679)
T ss_dssp             HHHTTTSSS
T ss_pred             HHHHHhcCC
Confidence            999998874

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.89  E-value=4.9e-08  Score=97.92  Aligned_cols=144  Identities=18%  Similarity=0.140  Sum_probs=107.0

Q ss_pred             HhcCCCChHHH--HHHHHHHHHcCC---hHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCH----H---HHH-HHHHH
Q 009850           39 IHKVPVGDTPY--VRAKNVQLVDKD---PEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRA----E---EAI-EAIKS  105 (524)
Q Consensus        39 ~~~~p~~~~~~--~~lg~~~~~~g~---~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~----~---eAi-~~~~~  105 (524)
                      ....|.+.++|  +..|..++..++   +.+|+.+|+++++++|+++.++-.++.+|.....+    .   +++ ..++.
T Consensus       187 ~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a  266 (372)
T 3ly7_A          187 QKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN  266 (372)
T ss_dssp             HHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred             hccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence            34566666655  567777777655   47999999999999999999999888887632111    1   111 12222


Q ss_pred             --HHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHH
Q 009850          106 --LRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLG  183 (524)
Q Consensus       106 --al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg  183 (524)
                        ++...|.++  .++..++..+...|++++|+..+++++.+                          +|. ..+|..+|
T Consensus       267 ~~a~~~~~~~a--~~~~alal~~l~~gd~d~A~~~l~rAl~L--------------------------n~s-~~a~~llG  317 (372)
T 3ly7_A          267 IVTLPELNNLS--IIYQIKAVSALVKGKTDESYQAINTGIDL--------------------------EMS-WLNYVLLG  317 (372)
T ss_dssp             HHTCGGGTTCH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------------------------CCC-HHHHHHHH
T ss_pred             HHhcccCCcCH--HHHHHHHHHHHhCCCHHHHHHHHHHHHhc--------------------------CCC-HHHHHHHH
Confidence              224456666  56677777777789999999999999988                          654 66788899


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q 009850          184 WALMQQNNYIEAEDAYRRALSIAPDNNK  211 (524)
Q Consensus       184 ~~~~~~g~~~eAi~~~~~Al~l~P~~~~  211 (524)
                      .++...|++++|++.|.+|+.++|..+.
T Consensus       318 ~~~~~~G~~~eA~e~~~~AlrL~P~~~t  345 (372)
T 3ly7_A          318 KVYEMKGMNREAADAYLTAFNLRPGANT  345 (372)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence            9999999999999999999999998876

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.85  E-value=1.6e-08  Score=82.40  Aligned_cols=65  Identities=17%  Similarity=0.150  Sum_probs=61.0

Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhc
Q 009850          172 EQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVK  236 (524)
Q Consensus       172 ~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~  236 (524)
                      +|+++.+++.+|.++...|++++|+.+|+++++++|+++. |+++|.+|..+|++++|+..|++++
T Consensus         3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al   68 (100)
T 3ma5_A            3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI   68 (100)
T ss_dssp             --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            7999999999999999999999999999999999999999 9999999999999999999999664

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.83  E-value=7e-09  Score=83.70  Aligned_cols=87  Identities=13%  Similarity=0.098  Sum_probs=76.6

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 009850           49 YVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDS-ALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYK  127 (524)
Q Consensus        49 ~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~-a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~  127 (524)
                      .+.+|..++..|++++|+..|++++..+|++.. +++.+|.++..+|++++|+..|++++.++|++..  ++..      
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~--~~~~------   74 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPA--LQAR------   74 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTH--HHHH------
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH--HHHH------
Confidence            467899999999999999999999999999999 9999999999999999999999999999999863  2211      


Q ss_pred             HcCChHHHHHHHHHHHHH
Q 009850          128 RCGRLDDQIALLKHKLYL  145 (524)
Q Consensus       128 ~~g~~~eA~~~~~~al~l  145 (524)
                        +.+.+++..|++++..
T Consensus        75 --~~~~~a~~~~~~~~~~   90 (99)
T 2kc7_A           75 --KMVMDILNFYNKDMYN   90 (99)
T ss_dssp             --HHHHHHHHHHCCTTHH
T ss_pred             --HHHHHHHHHHHHHhcc
Confidence              5667788888877766

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.82  E-value=6.4e-08  Score=84.02  Aligned_cols=111  Identities=16%  Similarity=0.153  Sum_probs=87.5

Q ss_pred             CChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH----cCChHHH
Q 009850           60 KDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKR----CGRLDDQ  135 (524)
Q Consensus        60 g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~----~g~~~eA  135 (524)
                      +++++|+.+|+++.+....  .+.  ||.+|...+..++|+.+|+++.+.  .++  ...+.+|.+|..    .+++++|
T Consensus         9 ~d~~~A~~~~~~aa~~g~~--~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~--~a~~~Lg~~y~~G~g~~~d~~~A   80 (138)
T 1klx_A            9 KDLKKAIQYYVKACELNEM--FGC--LSLVSNSQINKQKLFQYLSKACEL--NSG--NGCRFLGDFYENGKYVKKDLRKA   80 (138)
T ss_dssp             HHHHHHHHHHHHHHHTTCT--THH--HHHHTCTTSCHHHHHHHHHHHHHT--TCH--HHHHHHHHHHHHCSSSCCCHHHH
T ss_pred             cCHHHHHHHHHHHHcCCCH--hhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCH--HHHHHHHHHHHcCCCCCccHHHH
Confidence            4678888888888887643  333  888888888888888888888876  333  566778888887    7888888


Q ss_pred             HHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhC
Q 009850          136 IALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQ----QNNYIEAEDAYRRALSIA  206 (524)
Q Consensus       136 ~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~----~g~~~eAi~~~~~Al~l~  206 (524)
                      +.+|+++.+.                            +++.++++||.+|..    .+++++|+.+|+++.+..
T Consensus        81 ~~~~~~Aa~~----------------------------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A           81 AQYYSKACGL----------------------------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             HHHHHHHHHT----------------------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcC----------------------------CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence            8888888755                            567788888888888    788888888888888764

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.80  E-value=9.2e-09  Score=82.98  Aligned_cols=84  Identities=13%  Similarity=0.156  Sum_probs=49.7

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHH-HHHHHHHHHHHcCCHHHHHHHHH
Q 009850          122 LLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATR-LLGNLGWALMQQNNYIEAEDAYR  200 (524)
Q Consensus       122 lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~-a~~~Lg~~~~~~g~~~eAi~~~~  200 (524)
                      .|..+...|++++|+..|+++++.                          +|+++. +++++|.++...|++++|+.+|+
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~al~~--------------------------~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~   59 (99)
T 2kc7_A            6 TIKELINQGDIENALQALEEFLQT--------------------------EPVGKDEAYYLMGNAYRKLGDWQKALNNYQ   59 (99)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHH--------------------------CSSTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHH--------------------------CCCcHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            455555666666666666666665                          566666 66666666666666666666666


Q ss_pred             HHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccc
Q 009850          201 RALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAV  239 (524)
Q Consensus       201 ~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~  239 (524)
                      ++++++|++.. +.+        +.+.+++..|+++....
T Consensus        60 ~al~~~p~~~~~~~~--------~~~~~a~~~~~~~~~~~   91 (99)
T 2kc7_A           60 SAIELNPDSPALQAR--------KMVMDILNFYNKDMYNQ   91 (99)
T ss_dssp             HHHHHCTTSTHHHHH--------HHHHHHHHHHCCTTHHH
T ss_pred             HHHhcCCCcHHHHHH--------HHHHHHHHHHHHHhccC
Confidence            66666666655 432        34455555555544333

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.78  E-value=1e-07  Score=82.68  Aligned_cols=106  Identities=13%  Similarity=0.034  Sum_probs=94.4

Q ss_pred             CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCC
Q 009850           94 NRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQ  173 (524)
Q Consensus        94 g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p  173 (524)
                      +++++|+.+|+++.+.....+  .    +|.+|...+.+++|+.+|+++.+.                            
T Consensus         9 ~d~~~A~~~~~~aa~~g~~~a--~----lg~~y~~g~~~~~A~~~~~~Aa~~----------------------------   54 (138)
T 1klx_A            9 KDLKKAIQYYVKACELNEMFG--C----LSLVSNSQINKQKLFQYLSKACEL----------------------------   54 (138)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTH--H----HHHHTCTTSCHHHHHHHHHHHHHT----------------------------
T ss_pred             cCHHHHHHHHHHHHcCCCHhh--h----HHHHHHcCCCHHHHHHHHHHHHcC----------------------------
Confidence            468999999999999886554  2    899998889999999999999865                            


Q ss_pred             CcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHH----cCCHHHHHHHHHHh
Q 009850          174 EATRLLGNLGWALMQ----QNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMK----QGRIGEAKETLRRV  235 (524)
Q Consensus       174 ~~~~a~~~Lg~~~~~----~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~----~G~~~eA~~~~~~a  235 (524)
                      +++.++++||.+|..    .+++++|+.+|+++.+.  .++. +++||.+|..    .+++++|+.+|+++
T Consensus        55 g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A  123 (138)
T 1klx_A           55 NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKA  123 (138)
T ss_dssp             TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHH
Confidence            688999999999999    89999999999999986  5666 9999999999    89999999999965

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.66  E-value=9.1e-07  Score=88.75  Aligned_cols=152  Identities=10%  Similarity=-0.043  Sum_probs=106.3

Q ss_pred             HHHHcCCCcHHHH--HHHHHHHHHcCC---HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH---cC-ChHHHHHHHHH
Q 009850           71 AAINAGDRVDSAL--KDMAIVMKQQNR---AEEAIEAIKSLRSRCSDQAQESLDNILLDLYKR---CG-RLDDQIALLKH  141 (524)
Q Consensus        71 ~al~~~p~~~~a~--~~La~~~~~~g~---~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~---~g-~~~eA~~~~~~  141 (524)
                      ++....|.+..+|  +..|..+...+.   +.+|+.+|+++++++|+++...  ..++.+|..   .+ ........+.+
T Consensus       185 r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~--A~la~a~~~~~~~~~~~~~~~~~l~~  262 (372)
T 3ly7_A          185 TLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYAR--AEKALVDIVRHSQHPLDEKQLAALNT  262 (372)
T ss_dssp             HHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHH--HHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred             HHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHHHhccCCCchhhHHHHHH
Confidence            3445567766654  455666666544   5899999999999999997433  333333321   11 11111122222


Q ss_pred             HHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 009850          142 KLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMK  221 (524)
Q Consensus       142 al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~~~~Lg~~~~~  221 (524)
                      +++.                    ......+|.++.++..++..+...|++++|+..+++|+.++|+...|..+|.++..
T Consensus       263 a~~a--------------------~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~  322 (372)
T 3ly7_A          263 EIDN--------------------IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEM  322 (372)
T ss_dssp             HHHH--------------------HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred             HHHH--------------------HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            2211                    11223479999999999999999999999999999999999864338899999999


Q ss_pred             cCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHH
Q 009850          222 QGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLES  265 (524)
Q Consensus       222 ~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~  265 (524)
                      .|++++|++.|+                     +|+.+.|....
T Consensus       323 ~G~~~eA~e~~~---------------------~AlrL~P~~~t  345 (372)
T 3ly7_A          323 KGMNREAADAYL---------------------TAFNLRPGANT  345 (372)
T ss_dssp             TTCHHHHHHHHH---------------------HHHHHSCSHHH
T ss_pred             CCCHHHHHHHHH---------------------HHHhcCCCcCh
Confidence            999999999999                     67777776653

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.54  E-value=2e-06  Score=83.02  Aligned_cols=199  Identities=8%  Similarity=-0.069  Sum_probs=129.8

Q ss_pred             HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 009850           63 EKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHK  142 (524)
Q Consensus        63 ~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~a  142 (524)
                      --.+..++-.+..+|++...+...|..|..   |..|.-  +.=...-|.+.. .         .+..++..|..+|.++
T Consensus        49 P~~Lk~~e~Ll~~~P~~~~Ll~~~a~ly~~---Ya~afV--~~~a~~~~~~~~-~---------~~~~~~~RA~~Ly~ra  113 (301)
T 3u64_A           49 PLVLKVYEALHLQNPAHRGLSLAVGRLYIM---YANAFV--QTPAQYLPEDEF-E---------AQNEAYSRARKLYLRG  113 (301)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---HHHHHT--HHHHHTSCGGGH-H---------HHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHhhCCCCHHHHHHHHHHHHH---HHHHHh--cCchhhcchhhH-h---------hhhhhHHHHHHHHHHH
Confidence            345667777777889888888888777765   221111  110111122210 0         0112344555555555


Q ss_pred             HHHhhccHhhhcccHH-HHHH----HhHHHHHhcCCCcHHHHHHHHHHHHH---c--C------CHHHHHHHHHHHHhhC
Q 009850          143 LYLIQQGLAFNGKRTK-TARS----QGKKFQVSVEQEATRLLGNLGWALMQ---Q--N------NYIEAEDAYRRALSIA  206 (524)
Q Consensus       143 l~l~~~~~~~~~~~~~-~a~~----~~~~~~~~~~p~~~~a~~~Lg~~~~~---~--g------~~~eAi~~~~~Al~l~  206 (524)
                      ......+++....... ....    .........+|+++.+++..|.++..   .  |      ...+|...+++|++++
T Consensus       114 ~~y~~raL~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLD  193 (301)
T 3u64_A          114 ARYALSSLETAYPGFTREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLW  193 (301)
T ss_dssp             HHHHHHHHHHHSTTHHHHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhCccHHHHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhC
Confidence            4443333332211111 1100    00111233378898888888777644   1  3      3678999999999999


Q ss_pred             CCc--HH-HHHHHHHHHHc-----CCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH-
Q 009850          207 PDN--NK-MCNLGICLMKQ-----GRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDL-ESEMMNKGGDRVE-  276 (524)
Q Consensus       207 P~~--~~-~~~Lg~~~~~~-----G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~-~~a~~~lg~~~~~-  276 (524)
                      |+.  .. |..+|..|...     |+.++|..+|+                     +++++.|+. ...++..|..+.. 
T Consensus       194 P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~fe---------------------rAL~LnP~~~id~~v~YA~~l~~~  252 (301)
T 3u64_A          194 PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFE---------------------HLTRYCSAHDPDHHITYADALCIP  252 (301)
T ss_dssp             TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHH---------------------HHHHHCCTTCSHHHHHHHHHTTTT
T ss_pred             CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHH---------------------HHHHhCCCCCchHHHHHHHHHHHh
Confidence            994  44 99999999995     89999998888                     899999975 9999999999988 


Q ss_pred             cCCHHHHHHHHhhcccCCCCC
Q 009850          277 QSRLFDAFLGSSSIWQPQPCK  297 (524)
Q Consensus       277 ~g~~~eAi~~~~~al~~~P~~  297 (524)
                      +|++++|...++++++.+|..
T Consensus       253 ~gd~~~a~~~L~kAL~a~p~~  273 (301)
T 3u64_A          253 LNNRAGFDEALDRALAIDPES  273 (301)
T ss_dssp             TTCHHHHHHHHHHHHHCCGGG
T ss_pred             cCCHHHHHHHHHHHHcCCCCC
Confidence            499999999999999998884

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.52  E-value=1.1e-06  Score=70.69  Aligned_cols=70  Identities=16%  Similarity=0.047  Sum_probs=65.5

Q ss_pred             CCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccC
Q 009850          172 EQEATRLLGNLGWALMQQNN---YIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVAD  241 (524)
Q Consensus       172 ~p~~~~a~~~Lg~~~~~~g~---~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~  241 (524)
                      +|+++.++..+|.+++..++   .++|...++++++++|+++. ++.+|..+++.|+|++|+.+|++++...|.
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~   75 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP   75 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            68999999999999987776   79999999999999999999 999999999999999999999988777777

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.46  E-value=1.6e-06  Score=90.03  Aligned_cols=118  Identities=12%  Similarity=0.072  Sum_probs=92.6

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC-----CCcHH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHH
Q 009850           87 AIVMKQQNRAEEAIEAIKSLRSRC-----SDQAQ-ESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTA  160 (524)
Q Consensus        87 a~~~~~~g~~~eAi~~~~~al~~~-----p~~~~-~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a  160 (524)
                      ..-+..+|+|++|+..+++++.+.     |+++. ...+..+|.+|..+|+|++|+.++++++.+....+.         
T Consensus       294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg---------  364 (429)
T 3qwp_A          294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFP---------  364 (429)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSC---------
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcC---------
Confidence            344667899999999999999864     44443 567789999999999999999999999988321110         


Q ss_pred             HHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCcHH----HHHHHHHHHHc
Q 009850          161 RSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSI-----APDNNK----MCNLGICLMKQ  222 (524)
Q Consensus       161 ~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l-----~P~~~~----~~~Lg~~~~~~  222 (524)
                               ...|+-+..+++||.+|..+|++++|+..|++|+.+     .|+++.    +.+|+.+...+
T Consensus       365 ---------~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~  426 (429)
T 3qwp_A          365 ---------GSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI  426 (429)
T ss_dssp             ---------SSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred             ---------CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence                     013444678999999999999999999999999975     678766    56777777554

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.45  E-value=1.2e-06  Score=70.50  Aligned_cols=73  Identities=16%  Similarity=0.022  Sum_probs=67.2

Q ss_pred             CCCChHHHHHHHHHHHHcCC---hHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 009850           42 VPVGDTPYVRAKNVQLVDKD---PEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQA  114 (524)
Q Consensus        42 ~p~~~~~~~~lg~~~~~~g~---~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~  114 (524)
                      .|.+++.++.+|.+++..++   .++|..+++++++.+|+++.+++.+|..++..|+|++|+.++++++..+|.++
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~   77 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL   77 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence            46788899999999987776   79999999999999999999999999999999999999999999999999854

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.39  E-value=3.6e-06  Score=68.97  Aligned_cols=70  Identities=14%  Similarity=0.027  Sum_probs=64.4

Q ss_pred             ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 009850           45 GDTPYVRAKNVQLVDKDPEKAIPLFWAAINAG-------DRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQA  114 (524)
Q Consensus        45 ~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~-------p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~  114 (524)
                      .+..++.+|..++..|+|..|+.+|+.|++..       +.....+..||.++.++|++++|+.++++++++.|++.
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~   80 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQ   80 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH
Confidence            45678999999999999999999999999862       45688999999999999999999999999999999986

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.38  E-value=3.2e-06  Score=87.71  Aligned_cols=89  Identities=13%  Similarity=-0.033  Sum_probs=76.4

Q ss_pred             HHcCChHHHHHHHHHHHHc-----CCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCcHH-HHHHHHH
Q 009850           57 LVDKDPEKAIPLFWAAINA-----GDRV---DSALKDMAIVMKQQNRAEEAIEAIKSLRSR-----CSDQAQ-ESLDNIL  122 (524)
Q Consensus        57 ~~~g~~~~Ai~~~~~al~~-----~p~~---~~a~~~La~~~~~~g~~~eAi~~~~~al~~-----~p~~~~-~~l~~~l  122 (524)
                      ...|+|++|+..|++++.+     .|++   ..++.+||.+|..+|+|++|+.++++++.+     .|+++. ...++.|
T Consensus       309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL  388 (433)
T 3qww_A          309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL  388 (433)
T ss_dssp             TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence            4568999999999999985     4555   456889999999999999999999999876     345543 4677899


Q ss_pred             HHHHHHcCChHHHHHHHHHHHHH
Q 009850          123 LDLYKRCGRLDDQIALLKHKLYL  145 (524)
Q Consensus       123 g~~~~~~g~~~eA~~~~~~al~l  145 (524)
                      |.+|..+|++++|+.+|++++++
T Consensus       389 a~~~~~qg~~~eA~~~~~~Al~i  411 (433)
T 3qww_A          389 GRLYMGLENKAAGEKALKKAIAI  411 (433)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhccCHHHHHHHHHHHHHH
Confidence            99999999999999999999998

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.38  E-value=1.2e-06  Score=91.02  Aligned_cols=103  Identities=12%  Similarity=0.106  Sum_probs=82.5

Q ss_pred             HHcCCHHHHHHHHHHHHHh-----CCCcHH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHh
Q 009850           91 KQQNRAEEAIEAIKSLRSR-----CSDQAQ-ESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQG  164 (524)
Q Consensus        91 ~~~g~~~eAi~~~~~al~~-----~p~~~~-~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~  164 (524)
                      ...|+|++|+..|++++++     .|+++. ...++.+|.+|..+|+|++|+.++++++.+....+.-            
T Consensus       309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~------------  376 (433)
T 3qww_A          309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPV------------  376 (433)
T ss_dssp             TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCS------------
T ss_pred             hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCC------------
Confidence            3468999999999999986     345543 4677899999999999999999999999883211100            


Q ss_pred             HHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCcHH
Q 009850          165 KKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSI-----APDNNK  211 (524)
Q Consensus       165 ~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l-----~P~~~~  211 (524)
                            ..|+-+..+++||.+|..+|+|++|+..|++|+.+     .|+++.
T Consensus       377 ------~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~  422 (433)
T 3qww_A          377 ------YSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPY  422 (433)
T ss_dssp             ------SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHH
T ss_pred             ------CChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChH
Confidence                  03444678999999999999999999999999985     577765

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.37  E-value=6e-06  Score=85.63  Aligned_cols=93  Identities=12%  Similarity=-0.064  Sum_probs=79.1

Q ss_pred             HHHHHHcCChHHHHHHHHHHHHc-----CCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCcHH-HHH
Q 009850           53 KNVQLVDKDPEKAIPLFWAAINA-----GDRV---DSALKDMAIVMKQQNRAEEAIEAIKSLRSRC-----SDQAQ-ESL  118 (524)
Q Consensus        53 g~~~~~~g~~~~Ai~~~~~al~~-----~p~~---~~a~~~La~~~~~~g~~~eAi~~~~~al~~~-----p~~~~-~~l  118 (524)
                      ...+..+|+|++|+..|++++.+     .|++   ..++.++|.+|..+|+|++|+.++++++.+.     |+++. ...
T Consensus       294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~  373 (429)
T 3qwp_A          294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ  373 (429)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence            34566899999999999999975     3444   4568899999999999999999999998763     45543 467


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHH
Q 009850          119 DNILLDLYKRCGRLDDQIALLKHKLYL  145 (524)
Q Consensus       119 ~~~lg~~~~~~g~~~eA~~~~~~al~l  145 (524)
                      ++.+|.+|..+|++++|+.+|++++++
T Consensus       374 l~nLa~~~~~~g~~~eA~~~~~~Al~i  400 (429)
T 3qwp_A          374 VMKVGKLQLHQGMFPQAMKNLRLAFDI  400 (429)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            789999999999999999999999988

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.31  E-value=4.3e-05  Score=73.76  Aligned_cols=85  Identities=11%  Similarity=0.046  Sum_probs=74.3

Q ss_pred             hHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCC--cHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHh
Q 009850          132 LDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQE--ATRLLGNLGWALMQQ-----NNYIEAEDAYRRALS  204 (524)
Q Consensus       132 ~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~--~~~a~~~Lg~~~~~~-----g~~~eAi~~~~~Al~  204 (524)
                      ..+|...+++++++                          +|+  +..+|..+|.+|...     |+.++|..+|++|++
T Consensus       179 l~~A~a~lerAleL--------------------------DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~  232 (301)
T 3u64_A          179 VHAAVMMLERACDL--------------------------WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR  232 (301)
T ss_dssp             HHHHHHHHHHHHHH--------------------------CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh--------------------------CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH
Confidence            56788888889888                          899  577999999999995     999999999999999


Q ss_pred             hCCCc-HH-HHHHHHHHHH-cCCHHHHHHHHHHhcccccCC
Q 009850          205 IAPDN-NK-MCNLGICLMK-QGRIGEAKETLRRVKPAVADG  242 (524)
Q Consensus       205 l~P~~-~~-~~~Lg~~~~~-~G~~~eA~~~~~~a~~~~~~~  242 (524)
                      ++|+. .. ++..|..++. +|++++|..++++++...+..
T Consensus       233 LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~  273 (301)
T 3u64_A          233 YCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES  273 (301)
T ss_dssp             HCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred             hCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence            99975 77 8999999988 499999999999886655553

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=98.27  E-value=5.7e-05  Score=79.93  Aligned_cols=158  Identities=11%  Similarity=0.067  Sum_probs=128.4

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHhC--CCcHH
Q 009850           49 YVRAKNVQLVDKDPEKAIPLFWAAINA--GDRVDSALKDMAIVMKQQNR---------AEEAIEAIKSLRSRC--SDQAQ  115 (524)
Q Consensus        49 ~~~lg~~~~~~g~~~~Ai~~~~~al~~--~p~~~~a~~~La~~~~~~g~---------~~eAi~~~~~al~~~--p~~~~  115 (524)
                      +..+-..+.+.|++++|+.+|+++...  .|+ ...|..|-.++...+.         .++|.+.|++.....  |+.  
T Consensus        29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd-~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~--  105 (501)
T 4g26_A           29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLS-QYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE--  105 (501)
T ss_dssp             HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCC-HHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH--
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH--
Confidence            455556778999999999999999876  354 5667766666665443         788999999877653  444  


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Q 009850          116 ESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEA  195 (524)
Q Consensus       116 ~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eA  195 (524)
                       ..++.+...|.+.|++++|..+|++..+.                        .+.| +..+|+.+-..|.+.|++++|
T Consensus       106 -~tyn~lI~~~~~~g~~~~A~~l~~~M~~~------------------------g~~P-d~~tyn~lI~~~~~~g~~~~A  159 (501)
T 4g26_A          106 -ATFTNGARLAVAKDDPEMAFDMVKQMKAF------------------------GIQP-RLRSYGPALFGFCRKGDADKA  159 (501)
T ss_dssp             -HHHHHHHHHHHHHTCHHHHHHHHHHHHHT------------------------TCCC-CHHHHHHHHHHHHHTTCHHHH
T ss_pred             -HHHHHHHHHHHhcCCHHHHHHHHHHHHHc------------------------CCCC-ccceehHHHHHHHHCCCHHHH
Confidence             57788889999999999999999988654                        1134 566888899999999999999


Q ss_pred             HHHHHHHHhh--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 009850          196 EDAYRRALSI--APDNNKMCNLGICLMKQGRIGEAKETLRRV  235 (524)
Q Consensus       196 i~~~~~Al~l--~P~~~~~~~Lg~~~~~~G~~~eA~~~~~~a  235 (524)
                      ...|+++.+.  .|+...|..+-.+|.+.|+.++|...+++.
T Consensus       160 ~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~M  201 (501)
T 4g26_A          160 YEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRL  201 (501)
T ss_dssp             HHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence            9999999875  466666999999999999999999999975

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.22  E-value=1.2e-05  Score=65.72  Aligned_cols=80  Identities=19%  Similarity=0.130  Sum_probs=69.6

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhh
Q 009850           79 VDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCS-----DQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFN  153 (524)
Q Consensus        79 ~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p-----~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~  153 (524)
                      ++.-.+.+|..++..|+|..|+.+|+.+++..+     ......++..+|.+|.++|+++.|+.++++++.+        
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l--------   75 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--------   75 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------
Confidence            355678999999999999999999999998752     2233478899999999999999999999999999        


Q ss_pred             cccHHHHHHHhHHHHHhcCCCcHHHHHHHHH
Q 009850          154 GKRTKTARSQGKKFQVSVEQEATRLLGNLGW  184 (524)
Q Consensus       154 ~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~  184 (524)
                                        +|++..+..+++.
T Consensus        76 ------------------~P~~~~~~~n~~~   88 (104)
T 2v5f_A           76 ------------------DPEHQRANGNLKY   88 (104)
T ss_dssp             ------------------CTTCHHHHHHHHH
T ss_pred             ------------------CCCCHHHHhhHHH
Confidence                              8999999888873

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.21  E-value=1.2e-05  Score=70.18  Aligned_cols=80  Identities=9%  Similarity=0.027  Sum_probs=69.8

Q ss_pred             CCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhC-C-CcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcC
Q 009850          172 EQEATRLLGNLGWALMQQN---NYIEAEDAYRRALSIA-P-DNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRG  245 (524)
Q Consensus       172 ~p~~~~a~~~Lg~~~~~~g---~~~eAi~~~~~Al~l~-P-~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~  245 (524)
                      ++.+.++.+++|+++.+.+   +.++++..++.+++.+ | ++.+ +|+||..+.++|+|++|..+++            
T Consensus        28 ~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~------------   95 (152)
T 1pc2_A           28 GSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVR------------   95 (152)
T ss_dssp             TCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHH------------
T ss_pred             CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHH------------
Confidence            6788999999999999998   7779999999999998 7 3455 9999999999999999999999            


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 009850          246 VDSHLKAYERAQQMLKDLESEMMNKGG  272 (524)
Q Consensus       246 ~~~A~~~~~~al~~~p~~~~a~~~lg~  272 (524)
                               ++++..|++..+...+-.
T Consensus        96 ---------~lL~ieP~n~QA~~Lk~~  113 (152)
T 1pc2_A           96 ---------GLLQTEPQNNQAKELERL  113 (152)
T ss_dssp             ---------HHHHHCTTCHHHHHHHHH
T ss_pred             ---------HHHhcCCCCHHHHHHHHH
Confidence                     788888888776655443

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.20  E-value=0.0004  Score=73.29  Aligned_cols=117  Identities=9%  Similarity=-0.079  Sum_probs=80.4

Q ss_pred             cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHH-------------------------------
Q 009850          171 VEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGIC-------------------------------  218 (524)
Q Consensus       171 ~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~-------------------------------  218 (524)
                      ..|..+.+|..++..+...|+.++|...|++|+.. |.+.. |...+..                               
T Consensus       208 ~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  286 (493)
T 2uy1_A          208 SFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELD  286 (493)
T ss_dssp             HTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccH
Confidence            36889999999999999999999999999999999 98755 4333222                               


Q ss_pred             ---------HHHcCCHHHHHHHHHHhcccccCC-C--------------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 009850          219 ---------LMKQGRIGEAKETLRRVKPAVADG-P--------------RGVDSHLKAYERAQQMLKDLESEMMNKGGDR  274 (524)
Q Consensus       219 ---------~~~~G~~~eA~~~~~~a~~~~~~~-~--------------~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~  274 (524)
                               ..+.|..+.|...|+++ . .+.. .              ++.+.|...|++++...|+.+..+...+...
T Consensus       287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~-~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e  364 (493)
T 2uy1_A          287 LLRINHLNYVLKKRGLELFRKLFIEL-G-NEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFL  364 (493)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHHH-T-TSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHh-h-CCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence                     22345566666667666 2 1111 1              1345566667777776676666666666666


Q ss_pred             HHcCCHHHHHHHHhhc
Q 009850          275 VEQSRLFDAFLGSSSI  290 (524)
Q Consensus       275 ~~~g~~~eAi~~~~~a  290 (524)
                      ...|+.+.|...|+++
T Consensus       365 ~~~~~~~~aR~l~er~  380 (493)
T 2uy1_A          365 LRIGDEENARALFKRL  380 (493)
T ss_dssp             HHHTCHHHHHHHHHHS
T ss_pred             HHcCCHHHHHHHHHHH
Confidence            6667777777777666

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.15  E-value=2.2e-05  Score=68.56  Aligned_cols=72  Identities=15%  Similarity=0.124  Sum_probs=45.3

Q ss_pred             CCChHHHHHHHHHHHHcC---ChHHHHHHHHHHHHcC-C-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 009850           43 PVGDTPYVRAKNVQLVDK---DPEKAIPLFWAAINAG-D-RVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQA  114 (524)
Q Consensus        43 p~~~~~~~~lg~~~~~~g---~~~~Ai~~~~~al~~~-p-~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~  114 (524)
                      +...++.|++|.++...+   +.++++.+|+.+++.+ | ++.+++++||..++++|+|++|.++++++++.+|++.
T Consensus        29 ~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~  105 (152)
T 1pc2_A           29 SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNN  105 (152)
T ss_dssp             CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH
Confidence            445566666666666665   4456666666666665 4 4466666666666666666666666666666666664

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.14  E-value=0.00018  Score=75.98  Aligned_cols=52  Identities=8%  Similarity=-0.079  Sum_probs=47.3

Q ss_pred             hHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 009850           62 PEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQA  114 (524)
Q Consensus        62 ~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~  114 (524)
                      .......|++++...|..+..|...+..+...|+.++|...|++++.. |.+.
T Consensus       195 ~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~  246 (493)
T 2uy1_A          195 ESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGM  246 (493)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSS
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcH
Confidence            345678999999999999999999999999999999999999999999 9775

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=98.06  E-value=0.00031  Score=74.28  Aligned_cols=162  Identities=13%  Similarity=0.072  Sum_probs=123.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHcCC---------hHHHHHHHHHHHHHhhccH
Q 009850           82 ALKDMAIVMKQQNRAEEAIEAIKSLRSRC--SDQAQESLDNILLDLYKRCGR---------LDDQIALLKHKLYLIQQGL  150 (524)
Q Consensus        82 a~~~La~~~~~~g~~~eAi~~~~~al~~~--p~~~~~~l~~~lg~~~~~~g~---------~~eA~~~~~~al~l~~~~~  150 (524)
                      .+..+-..+.+.|+.++|++.|+++....  |+.   ..++.+..++...+.         +++|.++|++....     
T Consensus        28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~---~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~-----   99 (501)
T 4g26_A           28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQ---YHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVD-----   99 (501)
T ss_dssp             HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCH---HHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHT-----
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH---hHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHh-----
Confidence            35555678889999999999999987753  444   455666666655444         67788888877654     


Q ss_pred             hhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHcCCHHHH
Q 009850          151 AFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSI--APDNNKMCNLGICLMKQGRIGEA  228 (524)
Q Consensus       151 ~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~~~~Lg~~~~~~G~~~eA  228 (524)
                                         .+.| +..+|+.+-..|.+.|++++|...|+++.+.  .|+...|..+-..|.+.|+.++|
T Consensus       100 -------------------G~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A  159 (501)
T 4g26_A          100 -------------------KVVP-NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKA  159 (501)
T ss_dssp             -------------------TCCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             -------------------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHH
Confidence                               1134 5668999999999999999999999999875  46666699999999999999999


Q ss_pred             HHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcc
Q 009850          229 KETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIW  291 (524)
Q Consensus       229 ~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al  291 (524)
                      ...|++..                   .....| +...+..+-..+.+.|+.++|...+++..
T Consensus       160 ~~l~~~M~-------------------~~G~~P-d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr  202 (501)
T 4g26_A          160 YEVDAHMV-------------------ESEVVP-EEPELAALLKVSMDTKNADKVYKTLQRLR  202 (501)
T ss_dssp             HHHHHHHH-------------------HTTCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHH-------------------hcCCCC-CHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence            99999642                   222334 34467777788888999999888877654

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=97.78  E-value=0.0009  Score=57.63  Aligned_cols=124  Identities=7%  Similarity=0.014  Sum_probs=99.7

Q ss_pred             HcCCCcHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 009850           74 NAGDRVDSALKDMAIVMKQQNRA------EEAIEAIKSLRSRCSDQ------AQESLDNILLDLYKRCGRLDDQIALLKH  141 (524)
Q Consensus        74 ~~~p~~~~a~~~La~~~~~~g~~------~eAi~~~~~al~~~p~~------~~~~l~~~lg~~~~~~g~~~eA~~~~~~  141 (524)
                      -..|++++.|..........|+.      ++-++.|++++..-|..      .+..+|..++.. ...++.++|.+.|+.
T Consensus         7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~   85 (161)
T 4h7y_A            7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQM   85 (161)
T ss_dssp             ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHH
T ss_pred             eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHH
Confidence            35788999999998888888988      88889999999888743      123455555533 567999999999999


Q ss_pred             HHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 009850          142 KLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMK  221 (524)
Q Consensus       142 al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~~~~Lg~~~~~  221 (524)
                      ++.+                          ....+.+|...|..-.++|+...|...+.+|+.+.|........+..-++
T Consensus        86 a~~~--------------------------hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~nl~  139 (161)
T 4h7y_A           86 ARAN--------------------------CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALRNLN  139 (161)
T ss_dssp             HHHH--------------------------CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHHHHH
T ss_pred             HHHH--------------------------hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHHhhh
Confidence            9887                          45668899999999999999999999999999999998777777776666


Q ss_pred             cCC
Q 009850          222 QGR  224 (524)
Q Consensus       222 ~G~  224 (524)
                      .|.
T Consensus       140 ~~~  142 (161)
T 4h7y_A          140 LQK  142 (161)
T ss_dssp             TTC
T ss_pred             cCC
Confidence            664

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.41  E-value=0.0024  Score=53.61  Aligned_cols=83  Identities=13%  Similarity=0.069  Sum_probs=52.1

Q ss_pred             hHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHcCChHHHHH
Q 009850           62 PEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEE---AIEAIKSLRSRC-SDQAQESLDNILLDLYKRCGRLDDQIA  137 (524)
Q Consensus        62 ~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~e---Ai~~~~~al~~~-p~~~~~~l~~~lg~~~~~~g~~~eA~~  137 (524)
                      ...+...|.+.+..++...++.+++|+++.+..+..+   ++.+++..+..+ |... -.+.+.+|..++++|+|++|..
T Consensus        17 l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~-Rd~lY~LAvg~yklg~Y~~A~~   95 (126)
T 1nzn_A           17 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQ-RDYVFYLAVGNYRLKEYEKALK   95 (126)
T ss_dssp             HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHH-HHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchH-HHHHHHHHHHHHHhhhHHHHHH
Confidence            4455556666666666666777777777776665555   666666666654 3121 2455566666677777777777


Q ss_pred             HHHHHHHH
Q 009850          138 LLKHKLYL  145 (524)
Q Consensus       138 ~~~~al~l  145 (524)
                      +++.+|+.
T Consensus        96 ~~~~lL~~  103 (126)
T 1nzn_A           96 YVRGLLQT  103 (126)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            77777766

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.38  E-value=0.0019  Score=54.23  Aligned_cols=78  Identities=9%  Similarity=0.031  Sum_probs=64.3

Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHH---HHHHHHHHHhhC-CCc-HH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcC
Q 009850          172 EQEATRLLGNLGWALMQQNNYIE---AEDAYRRALSIA-PDN-NK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRG  245 (524)
Q Consensus       172 ~p~~~~a~~~Lg~~~~~~g~~~e---Ai~~~~~Al~l~-P~~-~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~  245 (524)
                      ++....+.+++|+++.+..+..+   ++..++..+..+ |.. .. ++.||..+.++|+|.+|..+++            
T Consensus        31 ~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~------------   98 (126)
T 1nzn_A           31 GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVR------------   98 (126)
T ss_dssp             SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH------------
T ss_pred             CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHH------------
Confidence            56778999999999999988777   999999999876 533 33 8899999999999999999999            


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHH
Q 009850          246 VDSHLKAYERAQQMLKDLESEMMNK  270 (524)
Q Consensus       246 ~~~A~~~~~~al~~~p~~~~a~~~l  270 (524)
                               ..++..|++..+....
T Consensus        99 ---------~lL~~eP~n~QA~~Lk  114 (126)
T 1nzn_A           99 ---------GLLQTEPQNNQAKELE  114 (126)
T ss_dssp             ---------HHHHHCTTCHHHHHHH
T ss_pred             ---------HHHHhCCCCHHHHHHH
Confidence                     6677777766654443

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.15  E-value=0.0014  Score=57.59  Aligned_cols=95  Identities=11%  Similarity=-0.014  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcC---CCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---Cc--
Q 009850           48 PYVRAKNVQLVDKDPEKAIPLFWAAINAG---DRV------DSALKDMAIVMKQQNRAEEAIEAIKSLRSRCS---DQ--  113 (524)
Q Consensus        48 ~~~~lg~~~~~~g~~~~Ai~~~~~al~~~---p~~------~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p---~~--  113 (524)
                      +++.-...++..|.|+.|+.....++...   |+.      ..++..+|.+++..|+|..|...|+++++...   ..  
T Consensus        22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s  101 (167)
T 3ffl_A           22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK  101 (167)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            36677788899999999999999987763   331      34788999999999999999999999876532   11  


Q ss_pred             ------------------HHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 009850          114 ------------------AQESLDNILLDLYKRCGRLDDQIALLKHK  142 (524)
Q Consensus       114 ------------------~~~~l~~~lg~~~~~~g~~~eA~~~~~~a  142 (524)
                                        ....+.+.++.||.+.|++++|+..++..
T Consensus       102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I  148 (167)
T 3ffl_A          102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI  148 (167)
T ss_dssp             ---------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred             ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence                              11257788999999999999999987753

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.00  E-value=0.01  Score=50.67  Aligned_cols=88  Identities=8%  Similarity=-0.047  Sum_probs=75.0

Q ss_pred             chhhhhhhHHHHhcCCCChHHHHHHHHHHHHcCCh---HHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHcCCHHHHHHHH
Q 009850           28 VSRTRSDSFHAIHKVPVGDTPYVRAKNVQLVDKDP---EKAIPLFWAAINAGD-RVDSALKDMAIVMKQQNRAEEAIEAI  103 (524)
Q Consensus        28 ~l~~~~~~~~~~~~~p~~~~~~~~lg~~~~~~g~~---~~Ai~~~~~al~~~p-~~~~a~~~La~~~~~~g~~~eAi~~~  103 (524)
                      .++.....++.-..-.....+-|+.|.++....+.   .+++.+++..++..| ..-++++.||..++++|+|++|..+.
T Consensus        21 eL~~lr~qY~~E~~~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~  100 (144)
T 1y8m_A           21 QLEILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYV  100 (144)
T ss_dssp             HHHHHHHHHHHTTSTTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHH
Confidence            56666666665533467888999999999998765   479999999999888 57889999999999999999999999


Q ss_pred             HHHHHhCCCcHH
Q 009850          104 KSLRSRCSDQAQ  115 (524)
Q Consensus       104 ~~al~~~p~~~~  115 (524)
                      +.+++..|++.+
T Consensus       101 d~lL~~eP~n~Q  112 (144)
T 1y8m_A          101 DTLFEHERNNKQ  112 (144)
T ss_dssp             HHHHHTCCCCHH
T ss_pred             HHHHhcCCCcHH
Confidence            999999999964

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=96.93  E-value=0.0068  Score=53.21  Aligned_cols=65  Identities=9%  Similarity=-0.091  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCc----HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Q 009850           82 ALKDMAIVMKQQNRAEEAIEAIKSLRSRC---SDQ----AQESLDNILLDLYKRCGRLDDQIALLKHKLYLI  146 (524)
Q Consensus        82 a~~~La~~~~~~g~~~eAi~~~~~al~~~---p~~----~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~  146 (524)
                      +++.-...+...|.|+.|+-....++...   |+-    ..+.+...+|+.++..|+|..|...|+++|++.
T Consensus        22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~   93 (167)
T 3ffl_A           22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQK   93 (167)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence            35556677888999999999998866654   331    235677889999999999999999999999874

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=96.82  E-value=0.032  Score=47.64  Aligned_cols=78  Identities=14%  Similarity=0.097  Sum_probs=64.8

Q ss_pred             CCCcHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhhCCCcHH--HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCH
Q 009850          172 EQEATRLLGNLGWALMQQNNY---IEAEDAYRRALSIAPDNNK--MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGV  246 (524)
Q Consensus       172 ~p~~~~a~~~Lg~~~~~~g~~---~eAi~~~~~Al~l~P~~~~--~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~  246 (524)
                      +.-...+.+++++++.+..+.   .+++..++..+...|....  ++.||..+.++|+|.+|..+.+             
T Consensus        35 ~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d-------------  101 (144)
T 1y8m_A           35 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVD-------------  101 (144)
T ss_dssp             TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHH-------------
T ss_pred             CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHH-------------
Confidence            345688999999999998865   5799999999999997655  8899999999999999999999             


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHH
Q 009850          247 DSHLKAYERAQQMLKDLESEMMNK  270 (524)
Q Consensus       247 ~~A~~~~~~al~~~p~~~~a~~~l  270 (524)
                              ..++..|++..+....
T Consensus       102 --------~lL~~eP~n~QA~~Lk  117 (144)
T 1y8m_A          102 --------TLFEHERNNKQVGALK  117 (144)
T ss_dssp             --------HHHHTCCCCHHHHHHH
T ss_pred             --------HHHhcCCCcHHHHHHH
Confidence                    6677777776654443

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=96.71  E-value=0.015  Score=50.03  Aligned_cols=111  Identities=11%  Similarity=0.044  Sum_probs=82.0

Q ss_pred             hCCCcHHHHHHHHHHHHHHHcCCh------HHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHH
Q 009850          109 RCSDQAQESLDNILLDLYKRCGRL------DDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNL  182 (524)
Q Consensus       109 ~~p~~~~~~l~~~lg~~~~~~g~~------~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~L  182 (524)
                      ..|.++  ..|..+.......|+.      ++-++.|++++...+..- ...                 .......|...
T Consensus         8 ~~p~~y--d~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k-~~~-----------------wrrYI~LWIrY   67 (161)
T 4h7y_A            8 MMANNP--EDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDK-YGQ-----------------NESFARIQVRF   67 (161)
T ss_dssp             --CCSH--HHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGG-GTT-----------------CHHHHHHHHHH
T ss_pred             eCCCCH--HHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccc-ccc-----------------HHHHHHHHHHH
Confidence            456665  6667777777777998      888889999987744331 000                 12235577777


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhccccc
Q 009850          183 GWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVA  240 (524)
Q Consensus       183 g~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~  240 (524)
                      +.. ...++.++|.+.|+.++.+....+. |...|..-.++|+...|...+.+++...+
T Consensus        68 A~~-~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~  125 (161)
T 4h7y_A           68 AEL-KAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGA  125 (161)
T ss_dssp             HHH-HHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             HHH-HHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence            755 5669999999999999999777766 99999999999999999999995544333

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=96.68  E-value=0.019  Score=48.44  Aligned_cols=88  Identities=8%  Similarity=-0.047  Sum_probs=73.0

Q ss_pred             chhhhhhhHHHHhcCCCChHHHHHHHHHHHHcCCh---HHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHcCCHHHHHHHH
Q 009850           28 VSRTRSDSFHAIHKVPVGDTPYVRAKNVQLVDKDP---EKAIPLFWAAINAGD-RVDSALKDMAIVMKQQNRAEEAIEAI  103 (524)
Q Consensus        28 ~l~~~~~~~~~~~~~p~~~~~~~~lg~~~~~~g~~---~~Ai~~~~~al~~~p-~~~~a~~~La~~~~~~g~~~eAi~~~  103 (524)
                      .+......++.-..-.....+-|+.|.++....+.   .+++.++...++.+| ..-++++.||..++++|+|++|..+.
T Consensus        22 eL~~l~~qy~~E~~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~  101 (134)
T 3o48_A           22 QLEILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYV  101 (134)
T ss_dssp             HHHHHHHHHHHTTGGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            56666666655322334667889999999998765   479999999999988 46899999999999999999999999


Q ss_pred             HHHHHhCCCcHH
Q 009850          104 KSLRSRCSDQAQ  115 (524)
Q Consensus       104 ~~al~~~p~~~~  115 (524)
                      +.+++..|++.+
T Consensus       102 d~lL~~eP~N~Q  113 (134)
T 3o48_A          102 DTLFEHERNNKQ  113 (134)
T ss_dssp             HHHHTTCTTCHH
T ss_pred             HHHHhhCCCCHH
Confidence            999999999964

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=96.61  E-value=0.041  Score=46.37  Aligned_cols=65  Identities=15%  Similarity=0.139  Sum_probs=55.2

Q ss_pred             cHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhhCCCcHH--HHHHHHHHHHcCCHHHHHHHHHHhcccc
Q 009850          175 ATRLLGNLGWALMQQNNY---IEAEDAYRRALSIAPDNNK--MCNLGICLMKQGRIGEAKETLRRVKPAV  239 (524)
Q Consensus       175 ~~~a~~~Lg~~~~~~g~~---~eAi~~~~~Al~l~P~~~~--~~~Lg~~~~~~G~~~eA~~~~~~a~~~~  239 (524)
                      .+.+.+++|+++.+..+.   .+++..++..+..+|....  ++.||..+.++|+|++|..+.+.++...
T Consensus        39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~e  108 (134)
T 3o48_A           39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE  108 (134)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC
T ss_pred             ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence            478999999999998765   5799999999999986644  8999999999999999999999443333

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.32  E-value=0.38  Score=52.83  Aligned_cols=131  Identities=21%  Similarity=0.224  Sum_probs=72.9

Q ss_pred             HHHHHcCChHHHHH-HHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCCh
Q 009850           54 NVQLVDKDPEKAIP-LFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRL  132 (524)
Q Consensus        54 ~~~~~~g~~~~Ai~-~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~  132 (524)
                      ......+++++|.. .+..    -++ ...+..+...+...|.+++|+...+        ++...     ..+....|++
T Consensus       607 ~~~~~~~~~~~a~~~~l~~----i~~-~~~~~~~~~~l~~~~~~~~a~~~~~--------~~~~~-----f~~~l~~~~~  668 (814)
T 3mkq_A          607 QTLTLRGEIEEAIENVLPN----VEG-KDSLTKIARFLEGQEYYEEALNISP--------DQDQK-----FELALKVGQL  668 (814)
T ss_dssp             HHHHHTTCHHHHHHHTGGG----CCC-HHHHHHHHHHHHHTTCHHHHHHHCC--------CHHHH-----HHHHHHHTCH
T ss_pred             hHHHHhCCHHHHHHHHHhc----CCc-hHHHHHHHHHHHhCCChHHheecCC--------Ccchh-----eehhhhcCCH
Confidence            34467888888876 4411    110 1223556666777777777775542        11111     1223456777


Q ss_pred             HHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--------
Q 009850          133 DDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALS--------  204 (524)
Q Consensus       133 ~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~--------  204 (524)
                      ++|.+..+                               ..++...|..+|..+.+.|+++.|+.+|.++-.        
T Consensus       669 ~~A~~~~~-------------------------------~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~  717 (814)
T 3mkq_A          669 TLARDLLT-------------------------------DESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLH  717 (814)
T ss_dssp             HHHHHHHT-------------------------------TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHH-------------------------------hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHH
Confidence            77766543                               235566778888888888888888888877521        


Q ss_pred             hCCCcHH-HHHHHHHHHHcCCHHHHHHHHH
Q 009850          205 IAPDNNK-MCNLGICLMKQGRIGEAKETLR  233 (524)
Q Consensus       205 l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~  233 (524)
                      ....+.. +..++......|++..|...|.
T Consensus       718 ~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~  747 (814)
T 3mkq_A          718 SSFNNKEGLVTLAKDAETTGKFNLAFNAYW  747 (814)
T ss_dssp             HHTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHcCchHHHHHHHH
Confidence            1133333 4444444444555555444443

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=96.24  E-value=0.49  Score=41.44  Aligned_cols=104  Identities=15%  Similarity=0.130  Sum_probs=78.8

Q ss_pred             HHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hC--CC-
Q 009850           38 AIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRS--RC--SD-  112 (524)
Q Consensus        38 ~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~--~~--p~-  112 (524)
                      +.-..|..++--..++.+++-.|.|..++-++..     -+...+.+.-+.||..+.+|..|+..++..+.  .+  |+ 
T Consensus        25 sa~L~~~~~eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~   99 (242)
T 3kae_A           25 AACLLPCKPEYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDV   99 (242)
T ss_dssp             HHHHC----CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCC
T ss_pred             HHHHccCChHHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccc
Confidence            3444566665567789999999999999987754     36678888889999999999999999999983  22  21 


Q ss_pred             cH-----------HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Q 009850          113 QA-----------QESLDNILLDLYKRCGRLDDQIALLKHKLYLI  146 (524)
Q Consensus       113 ~~-----------~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~  146 (524)
                      +.           ....+..+|.++...|+.++|+.+|.......
T Consensus       100 d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~  144 (242)
T 3kae_A          100 DARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKS  144 (242)
T ss_dssp             CHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             ccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCc
Confidence            11           13466788999999999999999999887664

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=96.17  E-value=0.032  Score=61.25  Aligned_cols=133  Identities=17%  Similarity=0.159  Sum_probs=86.0

Q ss_pred             cCC-HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHhhccHhh-hcccHHHHHHHhHHHHH
Q 009850           93 QNR-AEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRC-GRLDDQIALLKHKLYLIQQGLAF-NGKRTKTARSQGKKFQV  169 (524)
Q Consensus        93 ~g~-~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~-g~~~eA~~~~~~al~l~~~~~~~-~~~~~~~a~~~~~~~~~  169 (524)
                      .|+ ++.|+..+++....+|.... .+...+..+.... .+--+|+..+.++++........ ..........       
T Consensus       261 t~~~~~~a~~~le~L~~~~p~~~~-~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~-------  332 (754)
T 4gns_B          261 TPSLVDFTIDYLKGLTKKDPIHDI-YYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARL-------  332 (754)
T ss_dssp             CGGGHHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHH-------
T ss_pred             cccHHHHHHHHHHHHHhhCCchhH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccc-------
Confidence            445 68899999999999997641 1111111111122 23346777777666431100000 0000000000       


Q ss_pred             hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHh
Q 009850          170 SVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRV  235 (524)
Q Consensus       170 ~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a  235 (524)
                        .|.....+...+..+...|+|+-|+.+.++|+...|.... |+.|+.||..+|+|+.|+-.++.+
T Consensus       333 --~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          333 --MNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             --HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             --cCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence              1122345666688888999999999999999999999999 999999999999999999999864

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=95.74  E-value=0.21  Score=47.35  Aligned_cols=60  Identities=17%  Similarity=0.103  Sum_probs=54.3

Q ss_pred             HHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 009850           55 VQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQA  114 (524)
Q Consensus        55 ~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~  114 (524)
                      ..++.|++++|+......++.+|.+......|..+++-.|+++.|...++.+.+++|+..
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~   65 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL   65 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh
Confidence            456789999999999999999999999999999999999999999999999999999774

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=95.33  E-value=1  Score=45.45  Aligned_cols=171  Identities=12%  Similarity=0.068  Sum_probs=117.2

Q ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHH-----HHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCc--H--H
Q 009850           46 DTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSA-----LKDMAIVMKQ-QNRAEEAIEAIKSLRSRCSDQ--A--Q  115 (524)
Q Consensus        46 ~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a-----~~~La~~~~~-~g~~~eAi~~~~~al~~~p~~--~--~  115 (524)
                      ..+.+.||..|...|++++-..++......-+..+.+     ...+-..+.. -+..+.=++.+..+++.....  .  .
T Consensus        19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr   98 (394)
T 3txn_A           19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLR   98 (394)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4568899999999999999999887765543332222     2233333333 244555566666665543322  1  1


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCC--cHHHHHHHHHHHHHcCCHH
Q 009850          116 ESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQE--ATRLLGNLGWALMQQNNYI  193 (524)
Q Consensus       116 ~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~--~~~a~~~Lg~~~~~~g~~~  193 (524)
                      ..+-..+|.+|...|+|.+|...+.+.++....                      .+..  -.+++..-..+|...+++.
T Consensus        99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~----------------------~dd~~~llev~lle~~~~~~~~n~~  156 (394)
T 3txn_A           99 QSLEARLIALYFDTALYTEALALGAQLLRELKK----------------------LDDKNLLVEVQLLESKTYHALSNLP  156 (394)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT----------------------SSCTHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc----------------------cccchhHHHHHHHHHHHHHHhccHH
Confidence            234457899999999999999999988765211                      0111  1567788889999999999


Q ss_pred             HHHHHHHHHHhhC---CCcHH-----HHHHHHHHH-HcCCHHHHHHHHHHhccc
Q 009850          194 EAEDAYRRALSIA---PDNNK-----MCNLGICLM-KQGRIGEAKETLRRVKPA  238 (524)
Q Consensus       194 eAi~~~~~Al~l~---P~~~~-----~~~Lg~~~~-~~G~~~eA~~~~~~a~~~  238 (524)
                      ++...|.+|....   +.++.     ...-|..++ ..++|..|..+|-++...
T Consensus       157 k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~  210 (394)
T 3txn_A          157 KARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEG  210 (394)
T ss_dssp             HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence            9999999997653   12222     456788888 899999999998876433

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=95.17  E-value=0.31  Score=53.44  Aligned_cols=117  Identities=13%  Similarity=0.079  Sum_probs=85.5

Q ss_pred             cCC-hHHHHHHHHHHHHcCCCcHHHHHHHHHHHH--Hc-CCHHHHHHHHHHHHHh--------CCCcH--------HHHH
Q 009850           59 DKD-PEKAIPLFWAAINAGDRVDSALKDMAIVMK--QQ-NRAEEAIEAIKSLRSR--------CSDQA--------QESL  118 (524)
Q Consensus        59 ~g~-~~~Ai~~~~~al~~~p~~~~a~~~La~~~~--~~-g~~~eAi~~~~~al~~--------~p~~~--------~~~l  118 (524)
                      .|+ ++.|+..+++....+|.... ++..+.+..  .. .+--+|+..+.+.++.        .+.+.        ...+
T Consensus       261 t~~~~~~a~~~le~L~~~~p~~~~-~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~L  339 (754)
T 4gns_B          261 TPSLVDFTIDYLKGLTKKDPIHDI-YYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDL  339 (754)
T ss_dssp             CGGGHHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhhCCchhH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHH
Confidence            455 58899999999999997643 333332222  22 2344677777776642        22221        1235


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 009850          119 DNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDA  198 (524)
Q Consensus       119 ~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~  198 (524)
                      ....+..+...|+++-|+.+-++++..                          .|.....|+.|+.+|..+|+|+.|+-.
T Consensus       340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~--------------------------aPseF~tW~~La~vYi~l~d~e~ALLt  393 (754)
T 4gns_B          340 LNIQTNFLLNRGDYELALGVSNTSTEL--------------------------ALDSFESWYNLARCHIKKEEYEKALFA  393 (754)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------------CSSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHhccCcHHHHHHHHHHHHhc--------------------------CchhhHHHHHHHHHHHHhccHHHHHHH
Confidence            566677788999999999999999999                          899999999999999999999999977


Q ss_pred             HHHH
Q 009850          199 YRRA  202 (524)
Q Consensus       199 ~~~A  202 (524)
                      ++.+
T Consensus       394 LNSc  397 (754)
T 4gns_B          394 INSM  397 (754)
T ss_dssp             HHHS
T ss_pred             HhcC
Confidence            6644

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=95.09  E-value=0.6  Score=41.40  Aligned_cols=55  Identities=9%  Similarity=-0.124  Sum_probs=42.5

Q ss_pred             CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009850           44 VGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSL  106 (524)
Q Consensus        44 ~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~a  106 (524)
                      .+++.-|.++   +..|+++.|.+..+..     ++...|..||......|+++-|..+|+++
T Consensus         6 ~D~~~rF~LA---L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~   60 (177)
T 3mkq_B            6 QDPHIRFDLA---LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQ   60 (177)
T ss_dssp             SCHHHHHHHH---HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred             CChHHHHHHH---HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence            3444455555   6788999998887765     66788899999999999999888888875

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=94.90  E-value=1.2  Score=45.04  Aligned_cols=174  Identities=17%  Similarity=0.120  Sum_probs=109.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH---HHHHHHHHHHHHH-cCChHHHHHHHHHHHHHhhccHhhhccc
Q 009850           81 SALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQ---ESLDNILLDLYKR-CGRLDDQIALLKHKLYLIQQGLAFNGKR  156 (524)
Q Consensus        81 ~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~---~~l~~~lg~~~~~-~g~~~eA~~~~~~al~l~~~~~~~~~~~  156 (524)
                      .+.+.||.+|...|++++-.+++......-+.-+.   ..+-..+.+.+.. -+..+.-++....+++....        
T Consensus        20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~--------   91 (394)
T 3txn_A           20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ--------   91 (394)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH--------
Confidence            56789999999999999999988876554443221   1222233333322 24445555555555544110        


Q ss_pred             HHHHHHHhHHHHHhcCCCc-HH--HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CcHH-----HHHHHHHHHHcCCHH
Q 009850          157 TKTARSQGKKFQVSVEQEA-TR--LLGNLGWALMQQNNYIEAEDAYRRALSIAP--DNNK-----MCNLGICLMKQGRIG  226 (524)
Q Consensus       157 ~~~a~~~~~~~~~~~~p~~-~~--a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P--~~~~-----~~~Lg~~~~~~G~~~  226 (524)
                                     +... ..  .-..+|..|+..|+|.+|...+.+.+.--.  ++..     +..-...|..+|++.
T Consensus        92 ---------------~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~  156 (394)
T 3txn_A           92 ---------------EKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLP  156 (394)
T ss_dssp             ---------------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHH
T ss_pred             ---------------HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHH
Confidence                           1011 11  334789999999999999999999887421  1211     556678899999999


Q ss_pred             HHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH-HcCCHHHHHHHHhhccc
Q 009850          227 EAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKD-LESEMMNKGGDRV-EQSRLFDAFLGSSSIWQ  292 (524)
Q Consensus       227 eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~-~~g~~~eAi~~~~~al~  292 (524)
                      ++...|.++....               .++-..|. .+.....-|..+. ..++|.+|...|-.++.
T Consensus       157 k~k~~l~~a~~~~---------------~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~  209 (394)
T 3txn_A          157 KARAALTSARTTA---------------NAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFE  209 (394)
T ss_dssp             HHHHHHHHHHHHH---------------HHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhh---------------ccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence            9999999763211               01100111 1233455588888 89999999998877753

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=94.81  E-value=0.43  Score=52.45  Aligned_cols=139  Identities=14%  Similarity=-0.017  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 009850           48 PYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYK  127 (524)
Q Consensus        48 ~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~  127 (524)
                      ....+...+...|.+++|+...+        ++...+   ......|++++|.+..+.     .++.  ..|..+|..+.
T Consensus       631 ~~~~~~~~l~~~~~~~~a~~~~~--------~~~~~f---~~~l~~~~~~~A~~~~~~-----~~~~--~~W~~la~~al  692 (814)
T 3mkq_A          631 SLTKIARFLEGQEYYEEALNISP--------DQDQKF---ELALKVGQLTLARDLLTD-----ESAE--MKWRALGDASL  692 (814)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHCC--------CHHHHH---HHHHHHTCHHHHHHHHTT-----CCCH--HHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCChHHheecCC--------Ccchhe---ehhhhcCCHHHHHHHHHh-----hCcH--hHHHHHHHHHH
Confidence            34566667777888888876552        222223   345678999999887543     2343  67788899999


Q ss_pred             HcCChHHHHHHHHHH-----HHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009850          128 RCGRLDDQIALLKHK-----LYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRA  202 (524)
Q Consensus       128 ~~g~~~eA~~~~~~a-----l~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~A  202 (524)
                      +.|+++.|+.+|.++     +..                       +....++...+..++......|++..|...|.+.
T Consensus       693 ~~~~~~~A~~~y~~~~d~~~l~~-----------------------l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~  749 (814)
T 3mkq_A          693 QRFNFKLAIEAFTNAHDLESLFL-----------------------LHSSFNNKEGLVTLAKDAETTGKFNLAFNAYWIA  749 (814)
T ss_dssp             HTTCHHHHHHHHHHHTCHHHHHH-----------------------HHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHccChhhhHH-----------------------HHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHHc
Confidence            999999999998875     111                       0001334445556666666666666666665442


Q ss_pred             HhhCCCcHHHHHHHHHHHHcCCHHHHHHHHHH
Q 009850          203 LSIAPDNNKMCNLGICLMKQGRIGEAKETLRR  234 (524)
Q Consensus       203 l~l~P~~~~~~~Lg~~~~~~G~~~eA~~~~~~  234 (524)
                      =       .+-....+|.+.+++++|+..-++
T Consensus       750 g-------~~~~a~~~~~~~~~~~~A~~lA~~  774 (814)
T 3mkq_A          750 G-------DIQGAKDLLIKSQRFSEAAFLGST  774 (814)
T ss_dssp             T-------CHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             C-------CHHHHHHHHHHcCChHHHHHHHHH
Confidence            1       033344456677777777776664

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=94.76  E-value=2  Score=37.68  Aligned_cols=213  Identities=14%  Similarity=-0.005  Sum_probs=119.6

Q ss_pred             HHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHH
Q 009850           56 QLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQ  135 (524)
Q Consensus        56 ~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA  135 (524)
                      .++-.+|+.++-+-.-.   -|..++....++..++-.|.|..|+-++.+   +  +..  ...+.-..+|....+|..|
T Consensus        12 s~kY~dYdt~~fLsa~L---~~~~~eY~lL~~I~LyyngEY~R~Lf~L~~---l--NT~--Ts~YYk~LCy~klKdYkkA   81 (242)
T 3kae_A           12 SIRYRDYETAIFLAACL---LPCKPEYRMLMSIVLYLNGEYTRALFHLHK---L--NTC--TSKYYESLCYKKKKDYKKA   81 (242)
T ss_dssp             HHHTTCHHHHHHHHHHH---C----CTHHHHHHHHHHTTCHHHHHHHHHT---C--CBH--HHHHHHHHHHHHTTCHHHH
T ss_pred             HhhcccccHHHHHHHHH---ccCChHHHhhhhhhhhhcchHhHHHHHHHh---c--chH--HHHHHHHHHHHHHHHHHHH
Confidence            35667777776443332   344446677888899999999988876643   1  222  2223345678889999999


Q ss_pred             HHHHHHHHHHhhccHhhhcccHHHHHHHhHHHH---HhcCCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q 009850          136 IALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQ---VSVEQEATR-LLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK  211 (524)
Q Consensus       136 ~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~---~~~~p~~~~-a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~  211 (524)
                      +.+++..+.-.-.     .       .-.-...   .-.+|.+-+ .+..+|.++.+.|+-++|+.+|.......|-.+.
T Consensus        82 ~~~le~il~~kvd-----~-------d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~  149 (242)
T 3kae_A           82 IKSLESILEGKVE-----R-------DPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSP  149 (242)
T ss_dssp             HHHHHHHHTTCSB-----C-------CCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHH
T ss_pred             HHHHHHHHhcccc-----c-------CcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccch
Confidence            9999888743000     0       0000000   011455544 4556788888889999999999988888876655


Q ss_pred             HHHHHHHH-----------HHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHHHcCC
Q 009850          212 MCNLGICL-----------MKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMM-NKGGDRVEQSR  279 (524)
Q Consensus       212 ~~~Lg~~~-----------~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~-~lg~~~~~~g~  279 (524)
                      .-|+-.--           ...|+-.--.+.+......+..-      .-...++-....|....... +.+..|..+|.
T Consensus       150 vEnliyeN~vp~~~d~~~i~~~~~~~i~~~y~~d~~~lHe~~------s~~~ikkY~n~iPGiGSY~va~aa~~yf~lg~  223 (242)
T 3kae_A          150 VENLLLENKVPQKRDKENVRQTGRRGIEEEYVSDSIEFHESL------SPSLVKKYMEHVPGIGSYFISNAARRYFNLGM  223 (242)
T ss_dssp             HHHHHHTTCCCCCC-----------CHHHHHHHHHHHHHHHC------CHHHHHHHHTSTTTHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHhhcCCCcccchHHHHhhhhccchhhhhhhHHHHHHhc------cHHHHHHHHHhCCCchhHHHHHHHHHHHhccc
Confidence            22221100           00000000001111000000000      00233455566777776543 44678999999


Q ss_pred             HHHHHHHHhhcccCCCC
Q 009850          280 LFDAFLGSSSIWQPQPC  296 (524)
Q Consensus       280 ~~eAi~~~~~al~~~P~  296 (524)
                      .++...+|....+.+|-
T Consensus       224 ~d~s~~lf~~lR~kDP~  240 (242)
T 3kae_A          224 NDKSKACFELVRRKDPM  240 (242)
T ss_dssp             HHHHHHHHHHHHHHSTT
T ss_pred             chhHHHHHHHHHhcCCC
Confidence            99999999999888885

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=94.64  E-value=0.41  Score=48.38  Aligned_cols=93  Identities=17%  Similarity=0.045  Sum_probs=74.3

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHcCC--------Cc--H------------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 009850           51 RAKNVQLVDKDPEKAIPLFWAAINAGD--------RV--D------------SALKDMAIVMKQQNRAEEAIEAIKSLRS  108 (524)
Q Consensus        51 ~lg~~~~~~g~~~~Ai~~~~~al~~~p--------~~--~------------~a~~~La~~~~~~g~~~eAi~~~~~al~  108 (524)
                      ..|......|+.+.|...+++|+.+-.        ..  .            .+...++..+...|++++|+..+.+++.
T Consensus       120 ~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~  199 (388)
T 2ff4_A          120 TAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTF  199 (388)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            344455567999999999999998631        11  1            1234567888899999999999999999


Q ss_pred             hCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 009850          109 RCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYL  145 (524)
Q Consensus       109 ~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l  145 (524)
                      .+|-+-  .++..+..+|...|+..+|+..|+++-+.
T Consensus       200 ~~P~~E--~~~~~lm~al~~~Gr~~~Al~~y~~~r~~  234 (388)
T 2ff4_A          200 EHPYRE--PLWTQLITAYYLSDRQSDALGAYRRVKTT  234 (388)
T ss_dssp             HSTTCH--HHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             hCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            999775  57778888899999999999999988665

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=94.54  E-value=1.1  Score=45.17  Aligned_cols=102  Identities=14%  Similarity=0.047  Sum_probs=75.4

Q ss_pred             HHcCChHHHHHHHHHHHHHhhccHhhhc----ccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009850          127 KRCGRLDDQIALLKHKLYLIQQGLAFNG----KRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRA  202 (524)
Q Consensus       127 ~~~g~~~eA~~~~~~al~l~~~~~~~~~----~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~A  202 (524)
                      ...|+.+.|...+++++.++. |..+..    .+..........       ....+...++..+...|++.+|+..+..+
T Consensus       126 ~~~~~~~~a~~~l~~Al~L~r-G~~L~~~~~~~w~~~~r~~l~~-------~~~~a~~~~~~~~l~~g~~~~a~~~l~~~  197 (388)
T 2ff4_A          126 AAAGRFEQASRHLSAALREWR-GPVLDDLRDFQFVEPFATALVE-------DKVLAHTAKAEAEIACGRASAVIAELEAL  197 (388)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCC-SSTTGGGTTSTTHHHHHHHHHH-------HHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HhCCCHHHHHHHHHHHHHhcC-CCCCCCCCchhHHHHHHHHHHH-------HHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            346888999999999988862 221111    111111111111       12346677888999999999999999999


Q ss_pred             HhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhc
Q 009850          203 LSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVK  236 (524)
Q Consensus       203 l~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~  236 (524)
                      +..+|-+.. |..+-.++...|+..+|+..|+++.
T Consensus       198 ~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r  232 (388)
T 2ff4_A          198 TFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK  232 (388)
T ss_dssp             HHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            999999988 8899999999999999999999863

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=93.92  E-value=1.6  Score=38.73  Aligned_cols=109  Identities=9%  Similarity=0.034  Sum_probs=71.4

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHH
Q 009850           79 VDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTK  158 (524)
Q Consensus        79 ~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~  158 (524)
                      +++..+.++   ...|+++.|.+..+..     ++.  ..|..+|......|+++-|+.+|.++-..             
T Consensus         7 D~~~rF~LA---L~lg~l~~A~e~a~~l-----~~~--~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~-------------   63 (177)
T 3mkq_B            7 DPHIRFDLA---LEYGNLDAALDEAKKL-----NDS--ITWERLIQEALAQGNASLAEMIYQTQHSF-------------   63 (177)
T ss_dssp             CHHHHHHHH---HHTTCHHHHHHHHHHH-----CCH--HHHHHHHHHHHHTTCHHHHHHHHHHTTCH-------------
T ss_pred             ChHHHHHHH---HhcCCHHHHHHHHHHh-----CCH--HHHHHHHHHHHHcCChHHHHHHHHHhCCH-------------
Confidence            445555554   5789999999887665     333  67889999999999999999999876433             


Q ss_pred             HHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 009850          159 TARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRV  235 (524)
Q Consensus       159 ~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~~~~Lg~~~~~~G~~~eA~~~~~~a  235 (524)
                                           ..+..+|...|+-+.-...-+.+....-    +.....+++.+|++++++..|.+.
T Consensus        64 ---------------------~~L~~Ly~~tg~~e~L~kla~iA~~~g~----~n~af~~~l~lGdv~~~i~lL~~~  115 (177)
T 3mkq_B           64 ---------------------DKLSFLYLVTGDVNKLSKMQNIAQTRED----FGSMLLNTFYNNSTKERSSIFAEG  115 (177)
T ss_dssp             ---------------------HHHHHHHHHHTCHHHHHHHHHHHHHTTC----HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             ---------------------HHHHHHHHHhCCHHHHHHHHHHHHHCcc----HHHHHHHHHHcCCHHHHHHHHHHC
Confidence                                 2344445556665544444343332111    333445667788888888888753

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=93.90  E-value=0.47  Score=53.41  Aligned_cols=96  Identities=13%  Similarity=0.017  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 009850          117 SLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAE  196 (524)
Q Consensus       117 ~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi  196 (524)
                      ..++.+.+.|++.|+.++|..+|....+....                     ...| +..+|+.|-..|.+.|++++|.
T Consensus       128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~k---------------------G~~P-dvvTYNtLI~Glck~G~~~eA~  185 (1134)
T 3spa_A          128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQK---------------------RKLL-TLDMYNAVMLGWARQGAFKELV  185 (1134)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHH---------------------HTTC-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhc---------------------CCCC-CHhHHHHHHHHHHhCCCHHHHH
Confidence            34556666666667776666666554322000                     0022 3446666666666666666666


Q ss_pred             HHHHHHHhh--CCCcHHHHHHHHHHHHcCC-HHHHHHHHHH
Q 009850          197 DAYRRALSI--APDNNKMCNLGICLMKQGR-IGEAKETLRR  234 (524)
Q Consensus       197 ~~~~~Al~l--~P~~~~~~~Lg~~~~~~G~-~~eA~~~~~~  234 (524)
                      +.|+++.+.  .|+...|..+-.++.+.|+ .++|...|++
T Consensus       186 ~Lf~eM~~~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~E  226 (1134)
T 3spa_A          186 YVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQ  226 (1134)
T ss_dssp             HHHHHHHHTTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            666666553  3554446666666666665 3455555554

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=93.84  E-value=0.62  Score=52.48  Aligned_cols=97  Identities=8%  Similarity=-0.043  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhccc
Q 009850           82 ALKDMAIVMKQQNRAEEAIEAIKSLRS-----RCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKR  156 (524)
Q Consensus        82 a~~~La~~~~~~g~~~eAi~~~~~al~-----~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~  156 (524)
                      .+..+-..|++.|+.++|...|.....     ..|+-   ..|+.+...|.+.|++++|.++|++..+.           
T Consensus       129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~Pdv---vTYNtLI~Glck~G~~~eA~~Lf~eM~~~-----------  194 (1134)
T 3spa_A          129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTL---DMYNAVMLGWARQGAFKELVYVLFMVKDA-----------  194 (1134)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCH---HHHHHHHHHHHHHTCHHHHHHHHHHHHHT-----------
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCH---hHHHHHHHHHHhCCCHHHHHHHHHHHHHc-----------
Confidence            466777888888888888888866432     34444   56777778888888888888888877654           


Q ss_pred             HHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhC
Q 009850          157 TKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNN-YIEAEDAYRRALSIA  206 (524)
Q Consensus       157 ~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~-~~eAi~~~~~Al~l~  206 (524)
                                   ++.| +..+|+.+-.++.+.|+ .++|...|+++.+..
T Consensus       195 -------------G~~P-DvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG  231 (1134)
T 3spa_A          195 -------------GLTP-DLLSYAAALQCMGRQDQDAGTIERCLEQMSQEG  231 (1134)
T ss_dssp             -------------TCCC-CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred             -------------CCCC-cHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence                         1234 45567777777788787 467888888887754

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=93.37  E-value=0.44  Score=49.70  Aligned_cols=78  Identities=14%  Similarity=0.060  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 009850          118 LDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAED  197 (524)
Q Consensus       118 l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~  197 (524)
                      +...+|++.+....++.|..+|.+|..+                          .|++...++.||.+....|+.-+|+-
T Consensus       154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~--------------------------~P~~G~~~nqLavla~~~~~~l~a~y  207 (497)
T 1ya0_A          154 CLVHLGDIARYRNQTSQAESYYRHAAQL--------------------------VPSNGQPYNQLAILASSKGDHLTTIF  207 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------------CTTBSHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHHHh--------------------------CCCCCchHHHHHHHHhcccccHHHHH
Confidence            4456677777777777777777777776                          67777777777777777777777777


Q ss_pred             HHHHHHhhCCCcHH-HHHHHHHHHH
Q 009850          198 AYRRALSIAPDNNK-MCNLGICLMK  221 (524)
Q Consensus       198 ~~~~Al~l~P~~~~-~~~Lg~~~~~  221 (524)
                      +|-+++......+. +.|+...+.+
T Consensus       208 ~y~rsl~~~~Pf~~a~~nL~~~f~~  232 (497)
T 1ya0_A          208 YYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCChhHHHHHHHHHHH
Confidence            77777765544554 6666666543

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.23  E-value=0.15  Score=53.04  Aligned_cols=135  Identities=15%  Similarity=0.117  Sum_probs=61.6

Q ss_pred             HHHHHcCChHHHHHHHHHHHH-----------cCCCcHHHHHHHHHHHHHcCCHHHHHH----------HHHHHHH----
Q 009850           54 NVQLVDKDPEKAIPLFWAAIN-----------AGDRVDSALKDMAIVMKQQNRAEEAIE----------AIKSLRS----  108 (524)
Q Consensus        54 ~~~~~~g~~~~Ai~~~~~al~-----------~~p~~~~a~~~La~~~~~~g~~~eAi~----------~~~~al~----  108 (524)
                      ..++..+++++|..+-...+.           +++=.+..|+.++.++...|+......          .+-.+++    
T Consensus       144 i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~l  223 (523)
T 4b4t_S          144 LFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASL  223 (523)
T ss_dssp             -----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCS
T ss_pred             HHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhc
Confidence            345667889998888776651           134456678888888888887665321          2222222    


Q ss_pred             hCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHH
Q 009850          109 RCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQ  188 (524)
Q Consensus       109 ~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~  188 (524)
                      .........+++.+...|...+.|++|..+..++.-.  ....                   .+......++.+|.++..
T Consensus       224 r~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP--~~~~-------------------sn~q~~rY~YY~GRI~a~  282 (523)
T 4b4t_S          224 KHDNETKAMLINLILRDFLNNGEVDSASDFISKLEYP--HTDV-------------------SSSLEARYFFYLSKINAI  282 (523)
T ss_dssp             CSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSC--TTTS-------------------CHHHHHHHHHHHHHHHHH
T ss_pred             ccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcCC--cccC-------------------CHHHHHHHHHHHHHHHHH
Confidence            2223456688899999999999999999999887411  0000                   001125677889999999


Q ss_pred             cCCHHHHHHHHHHHHhhCCCc
Q 009850          189 QNNYIEAEDAYRRALSIAPDN  209 (524)
Q Consensus       189 ~g~~~eAi~~~~~Al~l~P~~  209 (524)
                      +++|.+|..++..|+...|.+
T Consensus       283 q~~Y~eA~~~L~~A~rkap~~  303 (523)
T 4b4t_S          283 QLDYSTANEYIIAAIRKAPHN  303 (523)
T ss_dssp             TTCHHHHHHHHHHHTSSCSCS
T ss_pred             hccHHHHHHHHHHHHHhCCcc
Confidence            999999999999999988754

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.04  E-value=4.7  Score=41.27  Aligned_cols=103  Identities=14%  Similarity=0.129  Sum_probs=74.2

Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH
Q 009850          115 QESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIE  194 (524)
Q Consensus       115 ~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~e  194 (524)
                      +..+...|+.+|...|++.+|...+.....-.....   .                 ...-.+++.....++...++|..
T Consensus       136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~---~-----------------~~~kve~~l~q~rl~l~~~d~~~  195 (445)
T 4b4t_P          136 RARVTKDLVEIKKEEGKIDEAADILCELQVETYGSM---E-----------------MSEKIQFILEQMELSILKGDYSQ  195 (445)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSS---C-----------------HHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcc---c-----------------HHHHHHHHHHHHHHHHHCCCHHH
Confidence            346667889999999999999998887653210000   0                 00114577788889999999999


Q ss_pred             HHHHHHHHHh---hCCCcHH-----HHHHHHHHHHcCCHHHHHHHHHHhcc
Q 009850          195 AEDAYRRALS---IAPDNNK-----MCNLGICLMKQGRIGEAKETLRRVKP  237 (524)
Q Consensus       195 Ai~~~~~Al~---l~P~~~~-----~~~Lg~~~~~~G~~~eA~~~~~~a~~  237 (524)
                      |...++++..   -.+..+.     +...|..+...++|.+|-.+|..+..
T Consensus       196 a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~  246 (445)
T 4b4t_P          196 ATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ  246 (445)
T ss_dssp             HHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            9999998742   2333333     45688899999999999999998743

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=92.96  E-value=1.9  Score=49.90  Aligned_cols=147  Identities=12%  Similarity=-0.016  Sum_probs=90.8

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C------------------
Q 009850           51 RAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRC-S------------------  111 (524)
Q Consensus        51 ~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~-p------------------  111 (524)
                      .+...+...|.++-|..    .+...|.++...+.+|.++...|++++|..+|+++..-- .                  
T Consensus       817 ~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~  892 (1139)
T 4fhn_B          817 ELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY  892 (1139)
T ss_dssp             HHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred             HHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence            34455666777766544    334567777778889999999999999999998752211 0                  


Q ss_pred             --CcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCc----HHHHHHHHHH
Q 009850          112 --DQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEA----TRLLGNLGWA  185 (524)
Q Consensus       112 --~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~----~~a~~~Lg~~  185 (524)
                        .+.....+.....++.+.|.++.++++.+.|++..                         .+++    ...|.++=..
T Consensus       893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~-------------------------~~~~~~~~~~l~~~iFk~  947 (1139)
T 4fhn_B          893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASK-------------------------ETDDEDLSIAITHETLKT  947 (1139)
T ss_dssp             TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHC-------------------------CSCCHHHHHHHHHHHHHH
T ss_pred             cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-------------------------cCCChhhHHHHHHHHHHH
Confidence              00112344555667777788888888777777651                         1222    2356677777


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHH
Q 009850          186 LMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGE  227 (524)
Q Consensus       186 ~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~e  227 (524)
                      +...|+|++|...+...=... .-.. +..+-..+++.|+...
T Consensus       948 ~L~l~~ye~Ay~aL~~~pd~~-~r~~cLr~LV~~lce~~~~~~  989 (1139)
T 4fhn_B          948 ACAAGKFDAAHVALMVLSTTP-LKKSCLLDFVNQLTKQGKINQ  989 (1139)
T ss_dssp             HHHHCCSGGGGHHHHHHHHSS-SCHHHHHHHHHHHHHHCCHHH
T ss_pred             HHhhCCHHHHHHHHHhCCCHH-HHHHHHHHHHHHHHhCCChhh
Confidence            888888888877765432211 1122 4445555566666544

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=92.69  E-value=0.59  Score=48.74  Aligned_cols=80  Identities=24%  Similarity=0.169  Sum_probs=63.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHH
Q 009850          178 LLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERA  256 (524)
Q Consensus       178 a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~a  256 (524)
                      .+..||.+......+..|..+|.+|+.+.|++.. ++.||.+....|+.-+|+-+|-+++.....-+...+.....|++.
T Consensus       154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~~  233 (497)
T 1ya0_A          154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKA  233 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Confidence            6678899999999999999999999999999999 999999999999999999999987543333333333344445544


Q ss_pred             H
Q 009850          257 Q  257 (524)
Q Consensus       257 l  257 (524)
                      +
T Consensus       234 ~  234 (497)
T 1ya0_A          234 L  234 (497)
T ss_dssp             T
T ss_pred             H
Confidence            4

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=92.06  E-value=0.31  Score=49.99  Aligned_cols=108  Identities=14%  Similarity=0.044  Sum_probs=78.4

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccH
Q 009850           79 VDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQA-QESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRT  157 (524)
Q Consensus        79 ~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~-~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~  157 (524)
                      ...++..+|..|...|++++|.+.|.++........ ...++.....++...+++..+...+.++-.+...+        
T Consensus       130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~--------  201 (429)
T 4b4t_R          130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKG--------  201 (429)
T ss_dssp             CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTC--------
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcC--------
Confidence            345688899999999999999999999887765331 23566667778888999999999999886652110        


Q ss_pred             HHHHHHhHHHHHhcCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 009850          158 KTARSQGKKFQVSVEQEA-TRLLGNLGWALMQQNNYIEAEDAYRRALSIAP  207 (524)
Q Consensus       158 ~~a~~~~~~~~~~~~p~~-~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P  207 (524)
                                   .+|.. .......|.++...++|.+|...|-.++.-..
T Consensus       202 -------------~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~  239 (429)
T 4b4t_R          202 -------------GDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFT  239 (429)
T ss_dssp             -------------CCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred             -------------CCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence                         01111 23445567778888999999999998877543

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=90.94  E-value=2.1  Score=40.54  Aligned_cols=60  Identities=13%  Similarity=0.199  Sum_probs=55.5

Q ss_pred             HHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 009850          126 YKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSI  205 (524)
Q Consensus       126 ~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l  205 (524)
                      +.+.|.+++|+......++.                          +|.++.....|-.+++-.|+|+.|...++.+.++
T Consensus         7 ll~~g~L~~al~~~~~~VR~--------------------------~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l   60 (273)
T 1zbp_A            7 ALSEGQLQQALELLIEAIKA--------------------------SPKDASLRSSFIELLCIDGDFERADEQLMQSIKL   60 (273)
T ss_dssp             HTTTTCHHHHHHHHHHHHHT--------------------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHh--------------------------CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence            34679999999999998888                          9999999999999999999999999999999999


Q ss_pred             CCCcHH
Q 009850          206 APDNNK  211 (524)
Q Consensus       206 ~P~~~~  211 (524)
                      +|+...
T Consensus        61 ~p~~~~   66 (273)
T 1zbp_A           61 FPEYLP   66 (273)
T ss_dssp             CGGGHH
T ss_pred             CchhhH
Confidence            999865

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=90.94  E-value=4.3  Score=41.56  Aligned_cols=98  Identities=6%  Similarity=-0.025  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHc--CCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCc--HHH
Q 009850           48 PYVRAKNVQLVDKDPEKAIPLFWAAINA--GDR----VDSALKDMAIVMKQQNRAEEAIEAIKSLRS---RCSDQ--AQE  116 (524)
Q Consensus        48 ~~~~lg~~~~~~g~~~~Ai~~~~~al~~--~p~----~~~a~~~La~~~~~~g~~~eAi~~~~~al~---~~p~~--~~~  116 (524)
                      ....|+.++...|++.+|...+.....-  ...    -.+.+.....+|...+++..|...+.++..   ..+..  ...
T Consensus       139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~  218 (445)
T 4b4t_P          139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKL  218 (445)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHH
Confidence            3467899999999999999999988642  111    235667778899999999999999998642   12222  234


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 009850          117 SLDNILLDLYKRCGRLDDQIALLKHKLYL  145 (524)
Q Consensus       117 ~l~~~lg~~~~~~g~~~eA~~~~~~al~l  145 (524)
                      .++...|.++...++|.+|-.+|..+...
T Consensus       219 ~~~~~~~~~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          219 EYYNLLVKISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             HHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            66778899999999999999999988765

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=90.57  E-value=0.78  Score=46.94  Aligned_cols=99  Identities=10%  Similarity=-0.006  Sum_probs=79.3

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---Cc-HHHHHH
Q 009850           47 TPYVRAKNVQLVDKDPEKAIPLFWAAINA---GDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCS---DQ-AQESLD  119 (524)
Q Consensus        47 ~~~~~lg~~~~~~g~~~~Ai~~~~~al~~---~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p---~~-~~~~l~  119 (524)
                      .++..+|..++..|++++|.++|.++...   ...-.+.+.....++...+++..+..++.++.....   +. ....+.
T Consensus       132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk  211 (429)
T 4b4t_R          132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK  211 (429)
T ss_dssp             SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence            35889999999999999999999998875   334567888888999999999999999999866532   21 223455


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHH
Q 009850          120 NILLDLYKRCGRLDDQIALLKHKLYL  145 (524)
Q Consensus       120 ~~lg~~~~~~g~~~eA~~~~~~al~l  145 (524)
                      ...|.++...++|.+|...|..++..
T Consensus       212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t  237 (429)
T 4b4t_R          212 TYYGIHCLAVRNFKEAAKLLVDSLAT  237 (429)
T ss_dssp             HHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhChHHHHHHHHHHHhcc
Confidence            56677788899999999999887654

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=88.15  E-value=6.7  Score=45.30  Aligned_cols=101  Identities=11%  Similarity=0.030  Sum_probs=78.1

Q ss_pred             cCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHc-----------------------CCCcHHHHHHHHHHHHHcCCHH
Q 009850           41 KVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINA-----------------------GDRVDSALKDMAIVMKQQNRAE   97 (524)
Q Consensus        41 ~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~-----------------------~p~~~~a~~~La~~~~~~g~~~   97 (524)
                      .++..+...|.+|.+++..|++++|..+|+++-.-                       ....+..|..+..++.+.|.++
T Consensus       837 ~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~  916 (1139)
T 4fhn_B          837 WLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYI  916 (1139)
T ss_dssp             HSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCH
T ss_pred             hccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHH
Confidence            45667777799999999999999999999887321                       1112355777888999999999


Q ss_pred             HHHHHHHHHHHhCCC-cH--HHHHHHHHHHHHHHcCChHHHHHHHHH
Q 009850           98 EAIEAIKSLRSRCSD-QA--QESLDNILLDLYKRCGRLDDQIALLKH  141 (524)
Q Consensus        98 eAi~~~~~al~~~p~-~~--~~~l~~~lg~~~~~~g~~~eA~~~~~~  141 (524)
                      .+++..+.|++..+. +.  ...+|..+-..+...|+|++|...+..
T Consensus       917 ~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~  963 (1139)
T 4fhn_B          917 DALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMV  963 (1139)
T ss_dssp             HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHH
T ss_pred             HHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence            999999999987653 32  234677777888899999999777643

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=88.14  E-value=30  Score=36.87  Aligned_cols=124  Identities=10%  Similarity=0.013  Sum_probs=59.2

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHcCCCcHHH-HH---HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 009850           52 AKNVQLVDKDPEKAIPLFWAAINAGDRVDSA-LK---DMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYK  127 (524)
Q Consensus        52 lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a-~~---~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~  127 (524)
                      .+...+...+.+.|...+........-+... +.   .+|.-+...+...++...+.+......++..  .....+. ..
T Consensus       220 ~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~e~~~r~-Al  296 (618)
T 1qsa_A          220 VAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSL--IERRVRM-AL  296 (618)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHH--HHHHHHH-HH
T ss_pred             HHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHH--HHHHHHH-HH
Confidence            3444455556666666666554332222221 11   1222222223244555555554443333321  1112222 23


Q ss_pred             HcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009850          128 RCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALS  204 (524)
Q Consensus       128 ~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~  204 (524)
                      +.|+++.|..+|.+.-..                          ........+-+|.++...|+.++|..+|+++..
T Consensus       297 r~~d~~~a~~~~~~l~~~--------------------------~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~  347 (618)
T 1qsa_A          297 GTGDRRGLNTWLARLPME--------------------------AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ  347 (618)
T ss_dssp             HHTCHHHHHHHHHHSCTT--------------------------GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HCCCHHHHHHHHHHcccc--------------------------ccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence            446676666666543211                          112355566667777777777777777776654

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=86.70  E-value=20  Score=34.60  Aligned_cols=28  Identities=21%  Similarity=0.223  Sum_probs=25.4

Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 009850          173 QEATRLLGNLGWALMQQNNYIEAEDAYR  200 (524)
Q Consensus       173 p~~~~a~~~Lg~~~~~~g~~~eAi~~~~  200 (524)
                      -+++..+..+|..|.+.|++.+|..+|-
T Consensus       131 ~Gdp~LH~~~a~~~~~e~~~~~A~~H~i  158 (312)
T 2wpv_A          131 FGDPYLHNTIGSKLLEGDFVYEAERYFM  158 (312)
T ss_dssp             TCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence            3678999999999999999999999885

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=85.63  E-value=40  Score=35.87  Aligned_cols=52  Identities=13%  Similarity=-0.027  Sum_probs=38.4

Q ss_pred             HHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 009850           56 QLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCS  111 (524)
Q Consensus        56 ~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p  111 (524)
                      +...+++..-+..|..    .|.+....+..+.+....|+-.+|....+.+.....
T Consensus        82 l~~~~~w~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~  133 (618)
T 1qsa_A           82 LARREDWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK  133 (618)
T ss_dssp             HHHTTCHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS
T ss_pred             HHhCCCHHHHHHhccC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC
Confidence            3456777776665543    378888888888889999998888887777766543

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=81.59  E-value=9.8  Score=42.60  Aligned_cols=158  Identities=13%  Similarity=0.035  Sum_probs=85.8

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcCC---C---cH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 009850           48 PYVRAKNVQLVDKDPEKAIPLFWAAINAGD---R---VD----SALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQES  117 (524)
Q Consensus        48 ~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p---~---~~----~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~  117 (524)
                      +.+.+|.++...+  .+++.++...+..+.   .   +.    .+-..||.++...++ +++.+.+...+..+.......
T Consensus       415 AllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-eev~e~L~~~L~dd~~~~~~~  491 (963)
T 4ady_A          415 SLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-IEVYEALKEVLYNDSATSGEA  491 (963)
T ss_dssp             HHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHHTCCHHHHHH
T ss_pred             HHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhcCCHHHHHH
Confidence            4555666554444  578888888776532   1   11    345577777776665 567777777776554333334


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 009850          118 LDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAED  197 (524)
Q Consensus       118 l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~  197 (524)
                      +...+|.++...|+-+-....+..+..-                          ..+...-...+|..+...|+.+.+..
T Consensus       492 AalALGli~vGTgn~~ai~~LL~~~~e~--------------------------~~e~vrR~aalgLGll~~g~~e~~~~  545 (963)
T 4ady_A          492 AALGMGLCMLGTGKPEAIHDMFTYSQET--------------------------QHGNITRGLAVGLALINYGRQELADD  545 (963)
T ss_dssp             HHHHHHHHHTTCCCHHHHHHHHHHHHHC--------------------------SCHHHHHHHHHHHHHHTTTCGGGGHH
T ss_pred             HHHHHhhhhcccCCHHHHHHHHHHHhcc--------------------------CcHHHHHHHHHHHHhhhCCChHHHHH
Confidence            5667788877777765444444433321                          11222222334444445566665555


Q ss_pred             HHHHHHhhCCCcHH----HHHHHHHHHHcCCHHHHHHHHHHh
Q 009850          198 AYRRALSIAPDNNK----MCNLGICLMKQGRIGEAKETLRRV  235 (524)
Q Consensus       198 ~~~~Al~l~P~~~~----~~~Lg~~~~~~G~~~eA~~~~~~a  235 (524)
                      ..+.... ..+...    -+.+|.+|...|+...-...++.+
T Consensus       546 li~~L~~-~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~  586 (963)
T 4ady_A          546 LITKMLA-SDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVA  586 (963)
T ss_dssp             HHHHHHH-CSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHH
T ss_pred             HHHHHHh-CCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHh
Confidence            5554443 322222    234666777777754433355543

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=80.84  E-value=5.4  Score=41.47  Aligned_cols=193  Identities=9%  Similarity=-0.001  Sum_probs=80.1

Q ss_pred             HHHcCCHHHHHHHHHHHHH---hCC------CcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHH
Q 009850           90 MKQQNRAEEAIEAIKSLRS---RCS------DQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTA  160 (524)
Q Consensus        90 ~~~~g~~~eAi~~~~~al~---~~p------~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a  160 (524)
                      +...+++++|.++-..++.   +..      +.....+|+.++.++...|+..+..........+.+.-+.         
T Consensus       146 L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~---------  216 (523)
T 4b4t_S          146 LWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMK---------  216 (523)
T ss_dssp             ---------------------------------------------------------CHHHHHHHHTHHHH---------
T ss_pred             HhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHH---------
Confidence            4456789998888776552   111      1112356666666676777766543332222221100000         


Q ss_pred             HHHhHHHHHhcCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CcHH----HHHHHHHHHHcCCHHHHHHHHH
Q 009850          161 RSQGKKFQVSVEQEA-TRLLGNLGWALMQQNNYIEAEDAYRRALSIAP--DNNK----MCNLGICLMKQGRIGEAKETLR  233 (524)
Q Consensus       161 ~~~~~~~~~~~~p~~-~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P--~~~~----~~~Lg~~~~~~G~~~eA~~~~~  233 (524)
                        ..+...+..|+.. +.+++.+-..|...+.|++|.....++.-...  .+..    ++.+|.++.-+++|.+|..++.
T Consensus       217 --~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~  294 (523)
T 4b4t_S          217 --FLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYII  294 (523)
T ss_dssp             --HHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             --HHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence              0000001113322 56788888999999999999999999853221  1222    5678999999999999999999


Q ss_pred             HhcccccCCC---cCHHHHHHHH---HHHHHhCCC--------CH---HHHHHHHHHHHHcCCH---HHHHHHHhhcccC
Q 009850          234 RVKPAVADGP---RGVDSHLKAY---ERAQQMLKD--------LE---SEMMNKGGDRVEQSRL---FDAFLGSSSIWQP  293 (524)
Q Consensus       234 ~a~~~~~~~~---~~~~~A~~~~---~~al~~~p~--------~~---~a~~~lg~~~~~~g~~---~eAi~~~~~al~~  293 (524)
                      .|....|...   +....+.+.+   +-.+...|.        ..   ..|+.+..++ +.|+.   ..++..++..|..
T Consensus       295 ~A~rkap~~~~a~gfr~~a~K~lI~V~LLlG~iP~r~lf~q~~l~~~L~pY~~Lv~Av-r~GdL~~F~~~L~~h~~~F~~  373 (523)
T 4b4t_S          295 AAIRKAPHNSKSLGFLQQSNKLHCCIQLLMGDIPELSFFHQSNMQKSLLPYYHLTKAV-KLGDLKKFTSTITKYKQLLLK  373 (523)
T ss_dssp             HHTSSCSCSSSCSHHHHHHHHHHHHHHHHHTCCCCHHHHTTTSCHHHHHHHHHHHHHH-HHTCHHHHHHHHHHTHHHHHH
T ss_pred             HHHHhCCcchhhhhHHHHHHHHHHhHHhhcCCCCChHHhhchhHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHhcceecc
Confidence            9987665543   3333333222   111222332        22   2255566654 44664   4455555555555


Q ss_pred             C
Q 009850          294 Q  294 (524)
Q Consensus       294 ~  294 (524)
                      +
T Consensus       374 D  374 (523)
T 4b4t_S          374 D  374 (523)
T ss_dssp             T
T ss_pred             C
Confidence            4

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	524
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-12
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-12
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	4e-05
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	8e-05
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	3e-07
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	1e-06
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	2e-04
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	1e-06
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	2e-06
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	7e-06
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	0.004
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	2e-05
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	3e-05
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	6e-05
d2hr2a1	156	a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C	1e-04
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	6e-04
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	9e-04
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	9e-04
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	0.004
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	0.002
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	0.003

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.4 bits (163), Expect = 1e-12
 Identities = 37/185 (20%), Positives = 62/185 (33%), Gaps = 11/185 (5%)

Query: 60  KDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLD 119
            +   AI  F  A+        A  ++  V+K+    + A+ A     S   + A   + 
Sbjct: 183 GEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAV--VH 240

Query: 120 NILLDLYKRCGRLDDQIALLKHKL--------YLIQQGLAFNGKRTKTARSQGKKFQVSV 171
             L  +Y   G +D  I   +  +               A   K +           + +
Sbjct: 241 GNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL 300

Query: 172 EQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKE 230
                  L NL     +Q N  EA   YR+AL + P+      NL   L +QG++ EA  
Sbjct: 301 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM 360

Query: 231 TLRRV 235
             +  
Sbjct: 361 HYKEA 365

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.0 bits (162), Expect = 1e-12
 Identities = 35/184 (19%), Positives = 61/184 (33%), Gaps = 11/184 (5%)

Query: 49  YVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRS 108
           Y+   NV    +  ++A+  +  A++          ++A V  +Q   + AI+  +    
Sbjct: 206 YINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE 265

Query: 109 RCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQ 168
                  ++  N L +  K  G + +        L L               R QG   +
Sbjct: 266 LQPHFP-DAYCN-LANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEE 323

Query: 169 --------VSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICL 219
                   + V  E      NL   L QQ    EA   Y+ A+ I+P       N+G  L
Sbjct: 324 AVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL 383

Query: 220 MKQG 223
            +  
Sbjct: 384 KEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.5 bits (101), Expect = 4e-05
 Identities = 24/133 (18%), Positives = 41/133 (30%), Gaps = 14/133 (10%)

Query: 181 NLGWALMQQNNYIEAEDAYRRALSIAPDN-NKMCNLGICLMKQGRIGEAKETLRRVK--- 236
           NLG     Q     A   + +A+++ P+  +   NLG  L +      A     R     
Sbjct: 174 NLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS 233

Query: 237 --PAVADGPRGV--------DSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLG 286
              AV  G            D  +  Y RA ++         N      E+  + +A   
Sbjct: 234 PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDC 293

Query: 287 SSSIWQPQPCKDH 299
            ++  +  P    
Sbjct: 294 YNTALRLCPTHAD 306

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (99), Expect = 8e-05
 Identities = 11/80 (13%), Positives = 23/80 (28%), Gaps = 3/80 (3%)

Query: 145 LIQQG-LAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRAL 203
            ++     +     + A     +     E + T +L  L     Q      +      A+
Sbjct: 2   PMELAHREYQAGDFEAAERHCMQL-WRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAI 60

Query: 204 SIAPDNNK-MCNLGICLMKQ 222
              P   +   NLG    ++
Sbjct: 61  KQNPLLAEAYSNLGNVYKER 80

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (119), Expect = 3e-07
 Identities = 18/179 (10%), Positives = 42/179 (23%), Gaps = 31/179 (17%)

Query: 63  EKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNIL 122
            + +       N           + I+  +Q      ++   S  S             L
Sbjct: 103 TQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCL----VHL 158

Query: 123 LDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNL 182
            D+ +   +     +  +H   L                               +    L
Sbjct: 159 GDIARYRNQTSQAESYYRHAAQL--------------------------VPSNGQPYNQL 192

Query: 183 GWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVA 240
                 + +++     Y R++++         NL   L K     +  +T   V   + 
Sbjct: 193 AILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEVKTKWGVSDFIK 251

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.2 bits (114), Expect = 1e-06
 Identities = 15/181 (8%), Positives = 51/181 (28%), Gaps = 15/181 (8%)

Query: 64  KAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQ--AQESLDNI 121
           ++      A      +  +    A V   +   ++  + +       +     ++ L N 
Sbjct: 4   QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDLYQKMLVTDLEYALDKKVEQDLWNH 63

Query: 122 ----LLDLYKRCGRLD---DQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQE 174
                +   +   +     ++  +  +    ++    F  +  +   +       +V+  
Sbjct: 64  AFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCT-----VFNVDLP 118

Query: 175 ATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRR 234
                  LG    +Q +          + S     + + +LG     + +  +A+   R 
Sbjct: 119 CRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC-QHCLVHLGDIARYRNQTSQAESYYRH 177

Query: 235 V 235
            
Sbjct: 178 A 178

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (96), Expect = 2e-04
 Identities = 8/74 (10%), Positives = 24/74 (32%), Gaps = 4/74 (5%)

Query: 193 IEAEDAYRRALSIAPDN-NKMCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHL- 250
           +++    R+A  +  D  +           +  + +  + +       A   + V+  L 
Sbjct: 3   LQSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDLYQKMLVTDLEYALD-KKVEQDLW 61

Query: 251 -KAYERAQQMLKDL 263
             A++     L+  
Sbjct: 62  NHAFKNQITTLQGQ 75

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (113), Expect = 1e-06
 Identities = 11/56 (19%), Positives = 19/56 (33%), Gaps = 1/56 (1%)

Query: 181 NLGWALMQQNNYIEAEDAYRRALSIAPDN-NKMCNLGICLMKQGRIGEAKETLRRV 235
             G   +Q+ +   A   +  A+   P +      LG    +  +   A   LRR 
Sbjct: 24  EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRC 79

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (110), Expect = 2e-06
 Identities = 28/199 (14%), Positives = 53/199 (26%), Gaps = 20/199 (10%)

Query: 56  QLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQ 115
             +   P  A  +  A   AG       K +   +   +   E  E   +          
Sbjct: 112 DWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSID 171

Query: 116 ESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQV------ 169
             +   L  L+   G  D  +      L +         K   T  +  +  +       
Sbjct: 172 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRR 231

Query: 170 --SVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDN------------NKMCNL 215
              ++    R   NLG + +    + EA + +  AL++   +            N    L
Sbjct: 232 ALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTL 291

Query: 216 GICLMKQGRIGEAKETLRR 234
            + L   G+         R
Sbjct: 292 RLALSMLGQSDAYGAADAR 310

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 45.4 bits (107), Expect = 7e-06
 Identities = 11/85 (12%), Positives = 23/85 (27%), Gaps = 1/85 (1%)

Query: 186 LMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPR 244
            + +    +A +    A+  +P +     +    L   G    A E L +      +   
Sbjct: 6   ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP 65

Query: 245 GVDSHLKAYERAQQMLKDLESEMMN 269
           G        + AQ      +     
Sbjct: 66  GASQLRHLVKAAQARKDFAQGAATA 90

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 36.9 bits (85), Expect = 0.004
 Identities = 18/153 (11%), Positives = 34/153 (22%), Gaps = 27/153 (17%)

Query: 57  LVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQE 116
           L +   ++A+ L   AI A  +  S       ++      E A E +             
Sbjct: 7   LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYL 64

Query: 117 SLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEAT 176
              + L  L K      D          L +                          E  
Sbjct: 65  PGASQLRHLVKAAQARKDFAQGAATAKVLGE-------------------------NEEL 99

Query: 177 RLLGNLGWALMQQNNYIEAEDAYRRALSIAPDN 209
                     M   +Y +  +   +   +  + 
Sbjct: 100 TKSLVSFNLSMVSQDYEQVSELALQIEELRQEK 132

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 44.1 bits (102), Expect = 2e-05
 Identities = 14/87 (16%), Positives = 26/87 (29%), Gaps = 13/87 (14%)

Query: 177 RLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVK 236
           R L  L     Q     +A+     AL +A     + +  I      +       L  + 
Sbjct: 292 RNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLP 351

Query: 237 PAVADGPRGVDSHLKAYERAQQMLKDL 263
                             RAQ++L+++
Sbjct: 352 ELEQ-------------HRAQRILREI 365

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.8 bits (102), Expect = 3e-05
 Identities = 14/180 (7%), Positives = 48/180 (26%), Gaps = 3/180 (1%)

Query: 54  NVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQ 113
                   P + +    + I       S+    + ++ Q +   ++    +   +    +
Sbjct: 152 VAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKE 211

Query: 114 AQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQ 173
            +   +    D   +      +  L + +     +         ++     K+ Q    +
Sbjct: 212 LELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPE 271

Query: 174 --EATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNKM-CNLGICLMKQGRIGEAKE 230
                  +  L  AL       E    +    ++ P       +L    + +  + + + 
Sbjct: 272 NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEY 331

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 41.5 bits (96), Expect = 6e-05
 Identities = 19/148 (12%), Positives = 44/148 (29%), Gaps = 14/148 (9%)

Query: 82  ALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKH 141
            +K+   V  +  +  +A+                 + + L   Y    +          
Sbjct: 17  IVKEKGTVYFKGGKYVQAVIQ------------YGKIVSWLEMEYGLSEKESKASESFLL 64

Query: 142 KLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRR 201
             +L    + +   R  T   +     + ++    + L   G A +  N +  A+  + +
Sbjct: 65  AAFL-NLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEK 123

Query: 202 ALSIAPDNNK-MCNLGICLMKQGRIGEA 228
            L + P N      + +C  K     E 
Sbjct: 124 VLEVNPQNKAARLQIFMCQKKAKEHNER 151

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

 Score = 40.5 bits (93), Expect = 1e-04
 Identities = 11/64 (17%), Positives = 15/64 (23%), Gaps = 14/64 (21%)

Query: 174 EATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNKMC-------------NLGICLM 220
            A   L +     +    Y EA    RRA+ I+                     L   L 
Sbjct: 8   GAYLALSD-AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALA 66

Query: 221 KQGR 224
               
Sbjct: 67  GLRS 70

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.5 bits (88), Expect = 6e-04
 Identities = 21/152 (13%), Positives = 39/152 (25%), Gaps = 13/152 (8%)

Query: 78  RVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIA 137
            +   LK++     +    E AI+    +          + D     L          I 
Sbjct: 25  LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIG 84

Query: 138 LLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAED 197
             K K+   Q  +    +  +   S  K                          Y +A  
Sbjct: 85  ACKLKMSDWQGAVDSCLEALEIDPSNTKALY------------RRAQGWQGLKEYDQALA 132

Query: 198 AYRRALSIAPDNNKM-CNLGICLMKQGRIGEA 228
             ++A  IAP++  +   L     K     + 
Sbjct: 133 DLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 164

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 39.0 bits (89), Expect = 9e-04
 Identities = 5/29 (17%), Positives = 11/29 (37%)

Query: 181 NLGWALMQQNNYIEAEDAYRRALSIAPDN 209
            LG   +   +   A   ++ A++    N
Sbjct: 214 YLGKYYLSLGDLDSATALFKLAVANNVHN 242

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (88), Expect = 9e-04
 Identities = 29/175 (16%), Positives = 60/175 (34%), Gaps = 26/175 (14%)

Query: 60  KDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLD 119
           KD + A+  F A  +   R      ++  +        EA +A     +R    A     
Sbjct: 19  KDWKGALDAFSAVQDPHSR---ICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQ 75

Query: 120 NILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLL 179
             +L  Y +  + D  I  LK  L  ++     + K             +  +  A  +L
Sbjct: 76  RGML--YYQTEKYDLAIKDLKEALIQLRGNQLIDYK----------ILGLQFKLFACEVL 123

Query: 180 GNLGWALMQQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRR 234
            N+ +   ++  + +AE+    A S+  +            +  +I +A E + +
Sbjct: 124 YNIAFMYAKKEEWKKAEEQLALATSMKSEP-----------RHSKIDKAMECVWK 167

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (83), Expect = 0.004
 Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 5/56 (8%)

Query: 173 QEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGE 227
            EA  L  N G     + ++  A DA+     +   ++++C N+G        + E
Sbjct: 3   VEAISLW-NEGVLAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKNMTE 54

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (83), Expect = 0.002
 Identities = 10/95 (10%), Positives = 31/95 (32%), Gaps = 2/95 (2%)

Query: 123 LDLYKRCGRLD--DQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLG 180
           L  Y +   LD  +   +        ++G     +       +  +      ++  +   
Sbjct: 24  LKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83

Query: 181 NLGWALMQQNNYIEAEDAYRRALSIAPDNNKMCNL 215
            +G +  ++  Y +A   Y ++L+     + +   
Sbjct: 84  RIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKC 118

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.9 bits (84), Expect = 0.003
 Identities = 15/100 (15%), Positives = 35/100 (35%), Gaps = 2/100 (2%)

Query: 183 GWALMQQNNYIEAEDAYRRALSIAPDN-NKMCNLGICLMKQGRIGEAKETLRRVKPAVAD 241
           G   ++  +Y EA    +RA S+A +      +     ++  +         R     ++
Sbjct: 79  GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESE 138

Query: 242 GPRGVDSHLKA-YERAQQMLKDLESEMMNKGGDRVEQSRL 280
               +   + A  ER  +  +       + G  R +Q+ +
Sbjct: 139 LHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACI 178

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	524
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.94
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.93
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.92
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.88
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.87
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.86
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.81
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.79
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.73
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.67
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.62
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.62
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.62
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.6
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.59
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.59
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.57
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.57
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.51
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.5
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.47
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.43
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.43
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.42
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.41
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.39
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.38
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.38
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.38
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.37
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.37
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.37
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.36
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.35
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.35
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.34
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.33
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.32
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.32
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.3
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.27
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.26
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.19
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.02
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.01
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.0
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.98
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.97
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.81
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.79
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.73
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.64
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.05
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.88
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.87
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.79
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	94.16
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	91.34
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	90.7
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	90.49

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=5.4e-25  Score=220.10  Aligned_cols=273  Identities=16%  Similarity=0.171  Sum_probs=231.9

Q ss_pred             chhhhhhhHH-HHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009850           28 VSRTRSDSFH-AIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSL  106 (524)
Q Consensus        28 ~l~~~~~~~~-~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~a  106 (524)
                      ....+...+. ++...|..+.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..+..+
T Consensus        14 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~   93 (388)
T d1w3ba_          14 DFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHA   93 (388)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccccccccccccc
Confidence            3444455554 456789999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHhCCCcHH------------------------------------------------------------------HHHHH
Q 009850          107 RSRCSDQAQ------------------------------------------------------------------ESLDN  120 (524)
Q Consensus       107 l~~~p~~~~------------------------------------------------------------------~~l~~  120 (524)
                      ....|....                                                                  ...+.
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (388)
T d1w3ba_          94 LRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWS  173 (388)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccCcchhHHHH
Confidence            888774321                                                                  13455


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHhhccHhh--------h-cccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 009850          121 ILLDLYKRCGRLDDQIALLKHKLYLIQQGLAF--------N-GKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNN  191 (524)
Q Consensus       121 ~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~--------~-~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~  191 (524)
                      .+|..+...|++++|...+++++++.+.....        . .+..+.+...... ....+|.....+..+|.++...|+
T Consensus       174 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~  252 (388)
T d1w3ba_         174 NLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLR-ALSLSPNHAVVHGNLACVYYEQGL  252 (388)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             hhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHH-hHHHhhhHHHHHHHHHHHHHHCCC
Confidence            67888889999999999999999987543321        1 1222333222221 134478899999999999999999


Q ss_pred             HHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCC-------------cCHHHHHHHHHHHH
Q 009850          192 YIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGP-------------RGVDSHLKAYERAQ  257 (524)
Q Consensus       192 ~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~-------------~~~~~A~~~~~~al  257 (524)
                      +++|+..|+++++++|+++. +.++|.++..+|++.+|+..|+.+....+...             +++++|+..|++++
T Consensus       253 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al  332 (388)
T d1w3ba_         253 IDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKAL  332 (388)
T ss_dssp             HHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHH
Confidence            99999999999999999999 99999999999999999999999977777664             78899999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCcc
Q 009850          258 QMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL  301 (524)
Q Consensus       258 ~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~l  301 (524)
                      +..|+++.+++++|.++..+|++++|+..|+++++++|.+....
T Consensus       333 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~  376 (388)
T d1w3ba_         333 EVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAY  376 (388)
T ss_dssp             TSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence            99999999999999999999999999999999999999987755

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2e-24  Score=213.45  Aligned_cols=229  Identities=16%  Similarity=0.087  Sum_probs=197.4

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 009850           48 PYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYK  127 (524)
Q Consensus        48 ~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~  127 (524)
                      .++..|..++..|++++|+.+|+++++.+|+++.+|+.+|.++..+|++++|+..|.++++++|++.  ..+..+|.+|.
T Consensus        21 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~   98 (323)
T d1fcha_          21 QPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQ--TALMALAVSFT   98 (323)
T ss_dssp             SHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccc--ccccccccccc
Confidence            3678999999999999999999999999999999999999999999999999999999999999997  77889999999


Q ss_pred             HcCChHHHHHHHHHHHHHhhccHhhhc------------------------ccH-HHHHHHhHHHHHhcCCC--cHHHHH
Q 009850          128 RCGRLDDQIALLKHKLYLIQQGLAFNG------------------------KRT-KTARSQGKKFQVSVEQE--ATRLLG  180 (524)
Q Consensus       128 ~~g~~~eA~~~~~~al~l~~~~~~~~~------------------------~~~-~~a~~~~~~~~~~~~p~--~~~a~~  180 (524)
                      ..|++++|+..+++++...+.......                        ... ++...+.+.  +.++|+  ++.++.
T Consensus        99 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a--l~~~p~~~~~~~~~  176 (323)
T d1fcha_          99 NESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAA--VRLDPTSIDPDVQC  176 (323)
T ss_dssp             HTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHH--HHHSTTSCCHHHHH
T ss_pred             ccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHH--HHHhhcccccccch
Confidence            999999999999999987633211100                        011 111111222  234555  478899


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHh
Q 009850          181 NLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQM  259 (524)
Q Consensus       181 ~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~  259 (524)
                      .+|.++...|++++|+.+|++++..+|++.. |+++|.++..+|++++|+.+|+                     ++++.
T Consensus       177 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~---------------------~al~~  235 (323)
T d1fcha_         177 GLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYR---------------------RALEL  235 (323)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH---------------------HHHHH
T ss_pred             hhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHH---------------------HHHHH
Confidence            9999999999999999999999999999999 9999999999999999999999                     78889


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCcc
Q 009850          260 LKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL  301 (524)
Q Consensus       260 ~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~l  301 (524)
                      .|+++.+++++|.+|...|++++|+..|+++++++|.+....
T Consensus       236 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~  277 (323)
T d1fcha_         236 QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPR  277 (323)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC----
T ss_pred             hhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhh
Confidence            999999999999999999999999999999999999887644

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=7.8e-24  Score=211.55  Aligned_cols=249  Identities=19%  Similarity=0.111  Sum_probs=195.7

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHc
Q 009850           50 VRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRC  129 (524)
Q Consensus        50 ~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~  129 (524)
                      +.+|..+++.|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..|+++++.+|+++  .++..+|.+|...
T Consensus         3 l~la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~--~a~~~l~~~~~~~   80 (388)
T d1w3ba_           3 MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLA--EAYSNLGNVYKER   80 (388)
T ss_dssp             CTHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHhhhh
Confidence            46899999999999999999999999999999999999999999999999999999999999997  7888999999999


Q ss_pred             CChHHHHHHHHHHHHHhhccHhhh--------------------------------------------------------
Q 009850          130 GRLDDQIALLKHKLYLIQQGLAFN--------------------------------------------------------  153 (524)
Q Consensus       130 g~~~eA~~~~~~al~l~~~~~~~~--------------------------------------------------------  153 (524)
                      |++++|+..+..++...+......                                                        
T Consensus        81 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (388)
T d1w3ba_          81 GQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLK  160 (388)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHH
Confidence            999999999999877541111000                                                        


Q ss_pred             ---------------------cccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-
Q 009850          154 ---------------------GKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-  211 (524)
Q Consensus       154 ---------------------~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-  211 (524)
                                           .+....+..... ..+..+|+++.++..+|.++...|++++|+..|++++...|.... 
T Consensus       161 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~-~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  239 (388)
T d1w3ba_         161 AIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFE-KAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVV  239 (388)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHH-HHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHH
T ss_pred             hhccCcchhHHHHhhcccccccCcHHHHHHHHH-HHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHH
Confidence                                 000011111000 013447777777888888888888888888888888887777777 


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHhcccccCCC-------------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 009850          212 MCNLGICLMKQGRIGEAKETLRRVKPAVADGP-------------RGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQS  278 (524)
Q Consensus       212 ~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~-------------~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g  278 (524)
                      +..+|.++...|++++|+..|++++...|...             +..++|+..++++....|.....+..+|.++...|
T Consensus       240 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  319 (388)
T d1w3ba_         240 HGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQG  319 (388)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCC
Confidence            77788888888888888888888776666553             56677888888888888888888888888888888


Q ss_pred             CHHHHHHHHhhcccCCCCCCCcc
Q 009850          279 RLFDAFLGSSSIWQPQPCKDHIL  301 (524)
Q Consensus       279 ~~~eAi~~~~~al~~~P~~~~~l  301 (524)
                      ++++|+..|+++++.+|.+....
T Consensus       320 ~~~~A~~~~~~al~~~p~~~~~~  342 (388)
T d1w3ba_         320 NIEEAVRLYRKALEVFPEFAAAH  342 (388)
T ss_dssp             CHHHHHHHHHHHTTSCTTCHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHH
Confidence            88888888888888888766544

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.1e-21  Score=192.47  Aligned_cols=214  Identities=11%  Similarity=0.039  Sum_probs=190.8

Q ss_pred             CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCcHHHHHHH
Q 009850           42 VPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNR-AEEAIEAIKSLRSRCSDQAQESLDN  120 (524)
Q Consensus        42 ~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~-~~eAi~~~~~al~~~p~~~~~~l~~  120 (524)
                      .|.-.+++..+|.++...+.+++|+.+++++|+++|++..+|+.+|.++..+|+ +++|+..+++++..+|++.  .+++
T Consensus        39 ~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~--~a~~  116 (315)
T d2h6fa1          39 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNY--QVWH  116 (315)
T ss_dssp             CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH--HHHH
T ss_pred             CHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhh--hHHH
Confidence            455567888999999999999999999999999999999999999999999875 9999999999999999997  7889


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 009850          121 ILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYR  200 (524)
Q Consensus       121 ~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~  200 (524)
                      .+|.++..+|++++|+..|.+++++                          +|++..+|.++|+++...|++++|+.+|+
T Consensus       117 ~~~~~~~~l~~~~eAl~~~~kal~~--------------------------dp~n~~a~~~~~~~~~~~~~~~~Al~~~~  170 (315)
T d2h6fa1         117 HRRVLVEWLRDPSQELEFIADILNQ--------------------------DAKNYHAWQHRQWVIQEFKLWDNELQYVD  170 (315)
T ss_dssp             HHHHHHHHHTCCTTHHHHHHHHHHH--------------------------CTTCHHHHHHHHHHHHHHTCCTTHHHHHH
T ss_pred             HHhHHHHhhccHHHHHHHHhhhhhh--------------------------hhcchHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            9999999999999999999999999                          99999999999999999999999999999


Q ss_pred             HHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 009850          201 RALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSR  279 (524)
Q Consensus       201 ~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~  279 (524)
                      ++++++|.+.. |+++|.++...|++.++..               .++|+..+.+++...|++..+|+.+|.++... .
T Consensus       171 ~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~---------------~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~-~  234 (315)
T d2h6fa1         171 QLLKEDVRNNSVWNQRYFVISNTTGYNDRAV---------------LEREVQYTLEMIKLVPHNESAWNYLKGILQDR-G  234 (315)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCSCSHHH---------------HHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTT-C
T ss_pred             HHHHHCCccHHHHHHHHHHHHHccccchhhh---------------hHHhHHHHHHHHHhCCCchHHHHHHHHHHHhc-C
Confidence            99999999999 9999999998887433222               12345555599999999999999999986654 4


Q ss_pred             HHHHHHHHhhcccCCCCCCC
Q 009850          280 LFDAFLGSSSIWQPQPCKDH  299 (524)
Q Consensus       280 ~~eAi~~~~~al~~~P~~~~  299 (524)
                      ..++...+..++..+|....
T Consensus       235 ~~~~~~~~~~~~~l~~~~~~  254 (315)
T d2h6fa1         235 LSKYPNLLNQLLDLQPSHSS  254 (315)
T ss_dssp             GGGCHHHHHHHHHHTTTCCC
T ss_pred             hHHHHHHHHHHHHhCCCcCC
Confidence            68888999999888887654

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=3e-20  Score=183.03  Aligned_cols=249  Identities=17%  Similarity=0.067  Sum_probs=178.7

Q ss_pred             chhhhhhhHH-HHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009850           28 VSRTRSDSFH-AIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSL  106 (524)
Q Consensus        28 ~l~~~~~~~~-~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~a  106 (524)
                      ....+...|. ++...|...++|+.+|.++...|++++|+.+|.++++++|++...+..+|.+|...|++++|+..++++
T Consensus        34 ~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~  113 (323)
T d1fcha_          34 DLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDW  113 (323)
T ss_dssp             CHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccccccccccchhhH
Confidence            4555666664 456789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCcHHH-------HH------HHHHHHHHHHcCChHHHHHHHHHHHHHhhccH----------hh-hcccHHHHHH
Q 009850          107 RSRCSDQAQE-------SL------DNILLDLYKRCGRLDDQIALLKHKLYLIQQGL----------AF-NGKRTKTARS  162 (524)
Q Consensus       107 l~~~p~~~~~-------~l------~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~----------~~-~~~~~~~a~~  162 (524)
                      +...|+....       ..      .......+...+.+.+|+..|.+++.+.+...          .+ ..+..+.+..
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~  193 (323)
T d1fcha_         114 LRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVD  193 (323)
T ss_dssp             HHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhc
Confidence            9888753210       00      00011112334455566666666665542210          01 1122222222


Q ss_pred             HhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccC
Q 009850          163 QGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVAD  241 (524)
Q Consensus       163 ~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~  241 (524)
                      ..+.. +..+|+++.+|+++|.++...|++++|+.+|+++++++|+++. |+++|.+|..+|++++|+..|++++...|.
T Consensus       194 ~~~~a-l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~  272 (323)
T d1fcha_         194 CFTAA-LSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRK  272 (323)
T ss_dssp             HHHHH-HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT
T ss_pred             ccccc-cccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence            22211 2338999999999999999999999999999999999999999 999999999999999999999976555544


Q ss_pred             CCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 009850          242 GPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGS  287 (524)
Q Consensus       242 ~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~  287 (524)
                      ..+..          ..........+.+++.++..+|+.+.+....
T Consensus       273 ~~~~~----------~~~~~~~~~~~~~l~~al~~~~~~d~~~~~~  308 (323)
T d1fcha_         273 SRGPR----------GEGGAMSENIWSTLRLALSMLGQSDAYGAAD  308 (323)
T ss_dssp             C----------------CCCCCHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred             Chhhh----------hhhHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            33111          1122233445677788888888776555443

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=6.2e-21  Score=181.86  Aligned_cols=205  Identities=11%  Similarity=-0.134  Sum_probs=112.6

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 009850           48 PYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYK  127 (524)
Q Consensus        48 ~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~  127 (524)
                      .|+.+|.+|...|++++|+..|++++.++|+++.+|+.+|.++..+|++++|+..|+++++++|+++  .++..+|.+|.
T Consensus        39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~a~~~lg~~~~  116 (259)
T d1xnfa_          39 LLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN--YAHLNRGIALY  116 (259)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT--HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhh--hhHHHHHHHHH
Confidence            4555555555555555555555555555555555555555555555555555555555555555544  34445555555


Q ss_pred             HcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 009850          128 RCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAP  207 (524)
Q Consensus       128 ~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P  207 (524)
                      ..|++++|+..|+++++.                          +|.+...+..++.++...+..+.+...........+
T Consensus       117 ~~g~~~~A~~~~~~al~~--------------------------~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (259)
T d1xnfa_         117 YGGRDKLAQDDLLAFYQD--------------------------DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDK  170 (259)
T ss_dssp             HTTCHHHHHHHHHHHHHH--------------------------CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCC
T ss_pred             HHhhHHHHHHHHHHHHhh--------------------------ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccch
Confidence            555555555555555554                          455554444555544444444444433333333333


Q ss_pred             CcHHHHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 009850          208 DNNKMCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGS  287 (524)
Q Consensus       208 ~~~~~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~  287 (524)
                      ....+. +.  ....+.....               +....+...+.......|....+++++|.+|..+|++++|+..|
T Consensus       171 ~~~~~~-~~--~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~  232 (259)
T d1xnfa_         171 EQWGWN-IV--EFYLGNISEQ---------------TLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALF  232 (259)
T ss_dssp             CSTHHH-HH--HHHTTSSCHH---------------HHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hhhhhh-HH--HHHHHHHHHH---------------HHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            222111 11  1111111000               11122333334556666777889999999999999999999999


Q ss_pred             hhcccCCCCCC
Q 009850          288 SSIWQPQPCKD  298 (524)
Q Consensus       288 ~~al~~~P~~~  298 (524)
                      ++++..+|.+.
T Consensus       233 ~~al~~~p~~~  243 (259)
T d1xnfa_         233 KLAVANNVHNF  243 (259)
T ss_dssp             HHHHTTCCTTC
T ss_pred             HHHHHcCCCCH
Confidence            99999999764

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1e-19  Score=180.13  Aligned_cols=180  Identities=8%  Similarity=-0.016  Sum_probs=169.6

Q ss_pred             HHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHHhhccHh
Q 009850           73 INAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGR-LDDQIALLKHKLYLIQQGLA  151 (524)
Q Consensus        73 l~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~-~~eA~~~~~~al~l~~~~~~  151 (524)
                      |..+|+..+++..+|.++.+.+.+++|+..+++++.++|++.  .+|+.+|.++...|+ +++|+.++++++++      
T Consensus        36 I~~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~--~a~~~r~~~l~~l~~~~~eal~~~~~al~~------  107 (315)
T d2h6fa1          36 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANY--TVWHFRRVLLKSLQKDLHEEMNYITAIIEE------  107 (315)
T ss_dssp             ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH------
T ss_pred             cccCHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCCh--HHHHHHHHHHHHhCcCHHHHHHHHHHHHHH------
Confidence            445788899999999999999999999999999999999997  788999999999875 99999999999999      


Q ss_pred             hhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHH
Q 009850          152 FNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKE  230 (524)
Q Consensus       152 ~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~  230 (524)
                                          +|++..+|+++|.++..+|++++|+..|.++++++|++.. |+++|.++..+|++++|+.
T Consensus       108 --------------------~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~  167 (315)
T d2h6fa1         108 --------------------QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQ  167 (315)
T ss_dssp             --------------------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHH
T ss_pred             --------------------HHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHH
Confidence                                9999999999999999999999999999999999999999 9999999999999999999


Q ss_pred             HHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC------HHHHHHHHhhcccCCCCCCCcc
Q 009850          231 TLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSR------LFDAFLGSSSIWQPQPCKDHIL  301 (524)
Q Consensus       231 ~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~------~~eAi~~~~~al~~~P~~~~~l  301 (524)
                      +|+                     ++++++|.+..+|+++|.++...+.      +++|+..+.++++.+|.+....
T Consensus       168 ~~~---------------------~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~  223 (315)
T d2h6fa1         168 YVD---------------------QLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAW  223 (315)
T ss_dssp             HHH---------------------HHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred             HHH---------------------HHHHHCCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHH
Confidence            999                     8899999999999999999998887      5799999999999999987644

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=1.3e-17  Score=158.37  Aligned_cols=186  Identities=12%  Similarity=0.042  Sum_probs=138.2

Q ss_pred             chhhhhhhHH-HHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009850           28 VSRTRSDSFH-AIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSL  106 (524)
Q Consensus        28 ~l~~~~~~~~-~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~a  106 (524)
                      ....+...|. ++...|..+.+|+.+|.++...|++++|+..|+++++++|+++.++..+|.++..+|++++|+..|+++
T Consensus        52 ~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a  131 (259)
T d1xnfa_          52 LRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAF  131 (259)
T ss_dssp             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            3444445443 556789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHH---HHHHHH
Q 009850          107 RSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATR---LLGNLG  183 (524)
Q Consensus       107 l~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~---a~~~Lg  183 (524)
                      ++.+|.+....  ..++..+...+..+.+..........                          .+....   ....++
T Consensus       132 l~~~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~  183 (259)
T d1xnfa_         132 YQDDPNDPFRS--LWLYLAEQKLDEKQAKEVLKQHFEKS--------------------------DKEQWGWNIVEFYLG  183 (259)
T ss_dssp             HHHCTTCHHHH--HHHHHHHHHHCHHHHHHHHHHHHHHS--------------------------CCCSTHHHHHHHHTT
T ss_pred             HhhccccHHHH--HHHHHHHHHhhhHHHHHHHHHHhhcc--------------------------chhhhhhhHHHHHHH
Confidence            99999887433  34455555666555554444433332                          222211   111111


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCC
Q 009850          184 WALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADG  242 (524)
Q Consensus       184 ~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~  242 (524)
                      . ....+.++.+...+...+...|.... |+++|.++..+|++++|+.+|++++...|+.
T Consensus       184 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  242 (259)
T d1xnfa_         184 N-ISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN  242 (259)
T ss_dssp             S-SCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT
T ss_pred             H-HHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence            1 12334567777777777777787777 9999999999999999999999655444443

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.73  E-value=2.9e-17  Score=162.95  Aligned_cols=214  Identities=9%  Similarity=-0.117  Sum_probs=172.9

Q ss_pred             cCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Q 009850           59 DKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQN----------RAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKR  128 (524)
Q Consensus        59 ~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g----------~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~  128 (524)
                      .+..++|+.++.+++..+|++..+|..++.++..++          ++++|+.++++++..+|++.  .++..+|.++..
T Consensus        42 ~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~--~~~~~~~~~~~~  119 (334)
T d1dcea1          42 GELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSY--GTWHHRCWLLSR  119 (334)
T ss_dssp             TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHT
T ss_pred             ccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcH--HHHHHhhHHHHH
Confidence            334589999999999999999999888777766544          47899999999999999987  677777877777


Q ss_pred             cCC--hHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhh
Q 009850          129 CGR--LDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLL-GNLGWALMQQNNYIEAEDAYRRALSI  205 (524)
Q Consensus       129 ~g~--~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~-~~Lg~~~~~~g~~~eAi~~~~~Al~l  205 (524)
                      .++  +++|+..+.++++.                          +|.+..++ ..+|.++...|.+++|+.++++++.+
T Consensus       120 ~~~~~~~~a~~~~~~al~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~  173 (334)
T d1dcea1         120 LPEPNWARELELCARFLEA--------------------------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR  173 (334)
T ss_dssp             CSSCCHHHHHHHHHHHHHH--------------------------CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT
T ss_pred             hccccHHHHHHHHHHHHhh--------------------------CchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHc
Confidence            665  78999999999998                          78877765 46778888888899999999999999


Q ss_pred             CCCcHH-HHHHHHHHHHcCCHHHHH------------------------------HHHHHhcccccCCC-----------
Q 009850          206 APDNNK-MCNLGICLMKQGRIGEAK------------------------------ETLRRVKPAVADGP-----------  243 (524)
Q Consensus       206 ~P~~~~-~~~Lg~~~~~~G~~~eA~------------------------------~~~~~a~~~~~~~~-----------  243 (524)
                      +|.+.. |+++|.++..+|++++|+                              ..|.+++...+...           
T Consensus       174 ~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~  253 (334)
T d1dcea1         174 NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKST  253 (334)
T ss_dssp             TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHH
Confidence            998888 888888888888765443                              33333322222222           


Q ss_pred             --cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCc
Q 009850          244 --RGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHI  300 (524)
Q Consensus       244 --~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~  300 (524)
                        +...+++..+.+++..+|....++..+|.++...|++++|+..|+++++.+|.....
T Consensus       254 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y  312 (334)
T d1dcea1         254 VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY  312 (334)
T ss_dssp             HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHH
T ss_pred             HHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHH
Confidence              556778899999999999999999999999999999999999999999999976543

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.67  E-value=6.4e-15  Score=143.94  Aligned_cols=251  Identities=12%  Similarity=0.015  Sum_probs=191.5

Q ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----HHH
Q 009850           46 DTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRV-----DSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQ----AQE  116 (524)
Q Consensus        46 ~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~-----~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~----~~~  116 (524)
                      .+.+...|.+++..|++++|+.+|++++...|++     ..++..+|.++..+|++++|+..|++++.+.+..    ...
T Consensus        12 ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~   91 (366)
T d1hz4a_          12 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL   91 (366)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHH
Confidence            4456778999999999999999999999999876     3578899999999999999999999999876532    223


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccH----------------hh-hcccHHHHHHH-hHHHHHhc---CCCc
Q 009850          117 SLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGL----------------AF-NGKRTKTARSQ-GKKFQVSV---EQEA  175 (524)
Q Consensus       117 ~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~----------------~~-~~~~~~~a~~~-~~~~~~~~---~p~~  175 (524)
                      .....++.++...|++..|...+.+++.+.....                .+ ..+....+... ........   ....
T Consensus        92 ~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  171 (366)
T d1hz4a_          92 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ  171 (366)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhH
Confidence            5667888999999999999999999987652110                01 11222222222 22222111   2233


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc-------HH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCC----
Q 009850          176 TRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDN-------NK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGP----  243 (524)
Q Consensus       176 ~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~-------~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~----  243 (524)
                      ..++..++.++...+++.++...+.++....+..       .. +..+|.++...|++++|...++++....+...    
T Consensus       172 ~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  251 (366)
T d1hz4a_         172 LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQ  251 (366)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGH
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHH
Confidence            6778888999999999999999999988765432       12 66788999999999999999999876655442    


Q ss_pred             -------------cCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCC
Q 009850          244 -------------RGVDSHLKAYERAQQM------LKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPC  296 (524)
Q Consensus       244 -------------~~~~~A~~~~~~al~~------~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~  296 (524)
                                   +.++.|...+++++..      .|....++..+|.+|..+|++++|+..+++++.+.+.
T Consensus       252 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~  323 (366)
T d1hz4a_         252 GQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR  323 (366)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhh
Confidence                         6778888888888743      4556678999999999999999999999999876544

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.62  E-value=1.6e-15  Score=150.12  Aligned_cols=215  Identities=7%  Similarity=-0.097  Sum_probs=165.5

Q ss_pred             HHHhcCCCChHHHHHHHHHHHHc----------CChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCC--HHHHHHHHH
Q 009850           37 HAIHKVPVGDTPYVRAKNVQLVD----------KDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNR--AEEAIEAIK  104 (524)
Q Consensus        37 ~~~~~~p~~~~~~~~lg~~~~~~----------g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~--~~eAi~~~~  104 (524)
                      .++...|...++|..++.++...          |++++|+.+|+++++.+|++..+|..+|.++...++  +++|+..++
T Consensus        54 ~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~  133 (334)
T d1dcea1          54 QILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCA  133 (334)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHH
T ss_pred             HHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHH
Confidence            35567889988887777665544          448999999999999999999999999999988875  899999999


Q ss_pred             HHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHH
Q 009850          105 SLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGW  184 (524)
Q Consensus       105 ~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~  184 (524)
                      +++..+|.+.. ......|.++...|.+++|+..+++++.+                          +|.+..+|+++|.
T Consensus       134 ~al~~~~~~~~-~~~~~~~~~~~~~~~~~~Al~~~~~~i~~--------------------------~p~~~~a~~~l~~  186 (334)
T d1dcea1         134 RFLEADERNFH-CWDYRRFVAAQAAVAPAEELAFTDSLITR--------------------------NFSNYSSWHYRSC  186 (334)
T ss_dssp             HHHHHCTTCHH-HHHHHHHHHHHTCCCHHHHHHHHHTTTTT--------------------------TCCCHHHHHHHHH
T ss_pred             HHHhhCchhhh-hhhhHHHHHHHhccccHHHHHHHHHHHHc--------------------------CCCCHHHHHHHHH
Confidence            99999998763 23456788888999999999999999988                          6777777777777


Q ss_pred             HHHHcCCHH------------------------------HHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHH
Q 009850          185 ALMQQNNYI------------------------------EAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLR  233 (524)
Q Consensus       185 ~~~~~g~~~------------------------------eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~  233 (524)
                      ++...|+++                              +|...|.+++..+|.+.. +..+|.++...|++.+|+..+.
T Consensus       187 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  266 (334)
T d1dcea1         187 LLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQ  266 (334)
T ss_dssp             HHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHhHHhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHH
Confidence            776666544                              334444444555555544 5566777777777777777777


Q ss_pred             HhcccccCCC-------------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 009850          234 RVKPAVADGP-------------RGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQS  278 (524)
Q Consensus       234 ~a~~~~~~~~-------------~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g  278 (524)
                      ++.+.+|...             +..++|++.|+++++++|.....|..++..+....
T Consensus       267 ~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~~e~  324 (334)
T d1dcea1         267 ELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLEN  324 (334)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred             HHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHhHhh
Confidence            7765555432             66677777788999999999999999988777543

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.62  E-value=7.6e-15  Score=142.60  Aligned_cols=215  Identities=12%  Similarity=0.074  Sum_probs=163.0

Q ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHHHcC------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----HH
Q 009850           46 DTPYVRAKNVQLVDKDPEKAIPLFWAAINAG------DRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQ----AQ  115 (524)
Q Consensus        46 ~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~------p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~----~~  115 (524)
                      .+.|...|.+|...|+|++|+.+|.+++.+.      ++...++..+|.+|..+|++++|+.+|++++.+.+..    ..
T Consensus        37 a~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~  116 (290)
T d1qqea_          37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRG  116 (290)
T ss_dssp             HHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhH
Confidence            4568999999999999999999999999862      3345679999999999999999999999999986633    12


Q ss_pred             HHHHHHHHHHHHH-cCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH
Q 009850          116 ESLDNILLDLYKR-CGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIE  194 (524)
Q Consensus       116 ~~l~~~lg~~~~~-~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~e  194 (524)
                      ..++..+|.+|.. .|++++|+.+|++++.+....-                    ..+....++.++|.++..+|+|++
T Consensus       117 ~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~--------------------~~~~~~~~~~~la~~~~~~g~y~~  176 (290)
T d1qqea_         117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQ--------------------SVALSNKCFIKCADLKALDGQYIE  176 (290)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT--------------------CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcC--------------------chhhhhhHHHHHHHHHHHcChHHH
Confidence            4566778888765 6999999999999998732100                    011225678999999999999999


Q ss_pred             HHHHHHHHHhhCCCcH-------H-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHH
Q 009850          195 AEDAYRRALSIAPDNN-------K-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESE  266 (524)
Q Consensus       195 Ai~~~~~Al~l~P~~~-------~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a  266 (524)
                      |+..|++++...+...       . +++.|.++...|++..|...++++...++.-....                ....
T Consensus       177 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sr----------------e~~~  240 (290)
T d1qqea_         177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSR----------------ESNF  240 (290)
T ss_dssp             HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------------------------HHH
T ss_pred             HHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchH----------------HHHH
Confidence            9999999999887763       2 57899999999999999999997655443321100                1122


Q ss_pred             HHHHHHHHHH--cCCHHHHHHHHhhcccCCCC
Q 009850          267 MMNKGGDRVE--QSRLFDAFLGSSSIWQPQPC  296 (524)
Q Consensus       267 ~~~lg~~~~~--~g~~~eAi~~~~~al~~~P~  296 (524)
                      ...+...+..  .+.+.+|+..|..+.+++|.
T Consensus       241 l~~l~~a~~~~d~e~~~eai~~y~~~~~lD~~  272 (290)
T d1qqea_         241 LKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKW  272 (290)
T ss_dssp             HHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHhhcCHH
Confidence            3344444443  45689999999988888764

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1.8e-14  Score=131.30  Aligned_cols=146  Identities=18%  Similarity=0.108  Sum_probs=120.6

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Q 009850           49 YVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKR  128 (524)
Q Consensus        49 ~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~  128 (524)
                      +++.|..+...|+|++|+..|.+   +.+.++.+|+++|.+|..+|++++|+..|+++++++|+++  .+++.+|.+|..
T Consensus         8 l~~~g~~~~~~~d~~~Al~~~~~---i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~--~a~~~~g~~~~~   82 (192)
T d1hh8a_           8 LWNEGVLAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLA--VAYFQRGMLYYQ   82 (192)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHT---SSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHh---cCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhh--hhHHHHHHHHHh
Confidence            45779999999999999999986   4667789999999999999999999999999999999998  788999999999


Q ss_pred             cCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 009850          129 CGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPD  208 (524)
Q Consensus       129 ~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~  208 (524)
                      +|++++|+..|++++...+........          ............+++++|.++...|++++|+..|.+++.+.|+
T Consensus        83 ~g~~~~A~~~~~kAl~~~~~n~~~~~~----------~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~  152 (192)
T d1hh8a_          83 TEKYDLAIKDLKEALIQLRGNQLIDYK----------ILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE  152 (192)
T ss_dssp             TTCHHHHHHHHHHHHHTTTTCSEEECG----------GGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred             hccHHHHHHHHHHHHHhCccCchHHHH----------HhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence            999999999999999763221110000          0000001233578999999999999999999999999999997


Q ss_pred             c
Q 009850          209 N  209 (524)
Q Consensus       209 ~  209 (524)
                      .
T Consensus       153 ~  153 (192)
T d1hh8a_         153 P  153 (192)
T ss_dssp             G
T ss_pred             c
Confidence            5

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=2.6e-14  Score=125.93  Aligned_cols=95  Identities=11%  Similarity=-0.031  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Q 009850           49 YVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKR  128 (524)
Q Consensus        49 ~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~  128 (524)
                      +...|..++..|+|++|+.+|+++++.+|++..+|.++|.++..+|++++|+..|+++++++|.+.  .++..+|.++..
T Consensus        13 l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~--~a~~~~g~~~~~   90 (159)
T d1a17a_          13 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI--KGYYRRAASNMA   90 (159)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccch--HHHHHHHHHHHH
Confidence            444555555555555555555555555555555555555555555555555555555555555554  444555555555


Q ss_pred             cCChHHHHHHHHHHHHH
Q 009850          129 CGRLDDQIALLKHKLYL  145 (524)
Q Consensus       129 ~g~~~eA~~~~~~al~l  145 (524)
                      .|++++|+.+|++++.+
T Consensus        91 ~g~~~eA~~~~~~a~~~  107 (159)
T d1a17a_          91 LGKFRAALRDYETVVKV  107 (159)
T ss_dssp             TTCHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHc
Confidence            55555555555555555

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.8e-14  Score=120.23  Aligned_cols=106  Identities=14%  Similarity=0.067  Sum_probs=53.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHH
Q 009850           84 KDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQ  163 (524)
Q Consensus        84 ~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~  163 (524)
                      ...|..+...|++++|+..|+++++.+|.++  .++..+|.+|..+|++++|+..|.+++++                  
T Consensus         7 ~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~--~~~~~~a~~~~~~~~~~~A~~~~~~al~~------------------   66 (117)
T d1elwa_           7 KEKGNKALSVGNIDDALQCYSEAIKLDPHNH--VLYSNRSAAYAKKGDYQKAYEDGCKTVDL------------------   66 (117)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHH------------------
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCcch--hhhhcccccccccccccccchhhhhHHHh------------------
Confidence            3444555555555555555555555555444  34444455555555555555555555544                  


Q ss_pred             hHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHH
Q 009850          164 GKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGI  217 (524)
Q Consensus       164 ~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~  217 (524)
                              +|+++.+|+++|.++..+|++++|+..|+++++++|+++. +..++.
T Consensus        67 --------~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~  113 (117)
T d1elwa_          67 --------KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQN  113 (117)
T ss_dssp             --------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred             --------ccchhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence                    4555555555555555555555555555555555555544 444443

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.7e-14  Score=120.53  Aligned_cols=112  Identities=12%  Similarity=-0.000  Sum_probs=106.2

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 009850           48 PYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYK  127 (524)
Q Consensus        48 ~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~  127 (524)
                      -+...|..++..|++++|+.+|.++|+.+|+++.+|..+|.+|..+|++++|+..|.+++.++|+++  ..++.+|.++.
T Consensus         5 ~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~~g~~~~   82 (117)
T d1elwa_           5 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWG--KGYSRKAAALE   82 (117)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchh--hHHHHHHHHHH
Confidence            3567899999999999999999999999999999999999999999999999999999999999998  77899999999


Q ss_pred             HcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHH
Q 009850          128 RCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALM  187 (524)
Q Consensus       128 ~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~  187 (524)
                      .+|++++|+..|++++++                          +|+++.++..++.+..
T Consensus        83 ~~~~~~~A~~~~~~a~~~--------------------------~p~~~~~~~~l~~l~~  116 (117)
T d1elwa_          83 FLNRFEEAKRTYEEGLKH--------------------------EANNPQLKEGLQNMEA  116 (117)
T ss_dssp             HTTCHHHHHHHHHHHHTT--------------------------CTTCHHHHHHHHHHHH
T ss_pred             HccCHHHHHHHHHHHHHh--------------------------CCCCHHHHHHHHHHhC
Confidence            999999999999999998                          9999999999988753

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=4.3e-14  Score=124.46  Aligned_cols=125  Identities=14%  Similarity=0.056  Sum_probs=112.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHH
Q 009850           81 SALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTA  160 (524)
Q Consensus        81 ~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a  160 (524)
                      ..+...|..+++.|+|++|+..|+++++++|+++  .++..+|.+|..+|++++|+..|++++++               
T Consensus        11 ~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~~~~~~A~~~~~kal~~---------------   73 (159)
T d1a17a_          11 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNA--IYYGNRSLAYLRTECYGYALGDATRAIEL---------------   73 (159)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHhhhccccchhhh--hhhhhhHHHHHhccccchHHHHHHHHHHH---------------
Confidence            4567789999999999999999999999999997  78899999999999999999999999999               


Q ss_pred             HHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHH--HHcCCHHHHHHHHH
Q 009850          161 RSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICL--MKQGRIGEAKETLR  233 (524)
Q Consensus       161 ~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~--~~~G~~~eA~~~~~  233 (524)
                                 +|++..+|..+|.++...|++++|+.+|++++.++|++.. +..++.+.  ...+.+++|+....
T Consensus        74 -----------~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~  138 (159)
T d1a17a_          74 -----------DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE  138 (159)
T ss_dssp             -----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----------cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCcH
Confidence                       9999999999999999999999999999999999999988 66666664  44555777766544

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=7.7e-14  Score=127.05  Aligned_cols=120  Identities=13%  Similarity=0.139  Sum_probs=83.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHH
Q 009850           83 LKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARS  162 (524)
Q Consensus        83 ~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~  162 (524)
                      +++.|..+...|+|++|++.|.++   .+.++  .+++.+|.+|..+|++++|+..|++++++                 
T Consensus         8 l~~~g~~~~~~~d~~~Al~~~~~i---~~~~~--~~~~nlG~~~~~~g~~~~A~~~~~kAl~l-----------------   65 (192)
T d1hh8a_           8 LWNEGVLAADKKDWKGALDAFSAV---QDPHS--RICFNIGCMYTILKNMTEAEKAFTRSINR-----------------   65 (192)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTS---SSCCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHhc---CCCCH--HHHHHHHHHHHHcCCchhHHHHHHHHHHH-----------------
Confidence            345677777777777777777653   34444  45667777777777777777777777777                 


Q ss_pred             HhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc----------------HH-HHHHHHHHHHcCCH
Q 009850          163 QGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDN----------------NK-MCNLGICLMKQGRI  225 (524)
Q Consensus       163 ~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~----------------~~-~~~Lg~~~~~~G~~  225 (524)
                               +|+++.+|+++|.++.++|+|++|+..|++++...+.+                .. ++++|.++..+|++
T Consensus        66 ---------dp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~  136 (192)
T d1hh8a_          66 ---------DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEW  136 (192)
T ss_dssp             ---------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCH
T ss_pred             ---------hhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCH
Confidence                     77777777777777777777777777777777654432                12 56677777777777


Q ss_pred             HHHHHHHH
Q 009850          226 GEAKETLR  233 (524)
Q Consensus       226 ~eA~~~~~  233 (524)
                      ++|+..|+
T Consensus       137 ~~A~~~l~  144 (192)
T d1hh8a_         137 KKAEEQLA  144 (192)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77777666

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.51  E-value=2.8e-14  Score=129.73  Aligned_cols=96  Identities=16%  Similarity=0.101  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 009850           48 PYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYK  127 (524)
Q Consensus        48 ~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~  127 (524)
                      .+...|..++..|+|++|+..|.+++.++|.++.+|.++|.+|..+|++++|+..|++++.++|+++  ..+..+|.+|.
T Consensus         6 ~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~--~a~~~lg~~~~   83 (201)
T d2c2la1           6 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV--KAHFFLGQCQL   83 (201)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCH--HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcH--HHHHHHHHHHH
Confidence            3444555555555555555555555555555555555555555555555555555555555555444  34444555555


Q ss_pred             HcCChHHHHHHHHHHHHH
Q 009850          128 RCGRLDDQIALLKHKLYL  145 (524)
Q Consensus       128 ~~g~~~eA~~~~~~al~l  145 (524)
                      .+|++++|+..|++++.+
T Consensus        84 ~l~~~~~A~~~~~~al~l  101 (201)
T d2c2la1          84 EMESYDEAIANLQRAYSL  101 (201)
T ss_dssp             HTTCHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHh
Confidence            555555555555555444

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.50  E-value=3.5e-14  Score=129.08  Aligned_cols=94  Identities=16%  Similarity=0.076  Sum_probs=89.8

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHH
Q 009850           79 VDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTK  158 (524)
Q Consensus        79 ~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~  158 (524)
                      ++..+...|..++..|+|++|+..|++++.++|.++  .++..+|.+|...|++++|+..|++++++             
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~--~~~~~lg~~y~~~~~~~~Ai~~~~~al~l-------------   67 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVA--VYYTNRALCYLKMQQPEQALADCRRALEL-------------   67 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH--HHHHHHHHHHHHTTCHHHHHHHHHHHTTS-------------
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHhHHHHHhhhhhhhhhhHHHHHHHHh-------------
Confidence            467788999999999999999999999999999997  78899999999999999999999999998             


Q ss_pred             HHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 009850          159 TARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYR  200 (524)
Q Consensus       159 ~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~  200 (524)
                                   +|+++.+|+++|.+|..+|+|++|+..|+
T Consensus        68 -------------~p~~~~a~~~lg~~~~~l~~~~~A~~~~~   96 (201)
T d2c2la1          68 -------------DGQSVKAHFFLGQCQLEMESYDEAIANLQ   96 (201)
T ss_dssp             -------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             -------------CCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence                         99999999999999999999999999997

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.47  E-value=8.8e-13  Score=127.70  Aligned_cols=191  Identities=14%  Similarity=0.069  Sum_probs=141.7

Q ss_pred             ChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--c--HHHHHHHHHHHHHHHcCChHHHH
Q 009850           61 DPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSD--Q--AQESLDNILLDLYKRCGRLDDQI  136 (524)
Q Consensus        61 ~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~--~--~~~~l~~~lg~~~~~~g~~~eA~  136 (524)
                      +|++|..+|.++              |.+|..+|+|++|+.+|.+++.+...  +  .....+..+|.+|...|++++|+
T Consensus        32 ~~~~Aa~~y~~a--------------a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~   97 (290)
T d1qqea_          32 KFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV   97 (290)
T ss_dssp             HHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cHHHHHHHHHHH--------------HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHH
Confidence            467777666654              88999999999999999999997531  1  12467888999999999999999


Q ss_pred             HHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCC---c---
Q 009850          137 ALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQ-QNNYIEAEDAYRRALSIAPD---N---  209 (524)
Q Consensus       137 ~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~-~g~~~eAi~~~~~Al~l~P~---~---  209 (524)
                      .+|++++.+......                    ......++..+|.++.. .|++++|+.+|++++.+.+.   .   
T Consensus        98 ~~~~~a~~~~~~~~~--------------------~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~  157 (290)
T d1qqea_          98 DSLENAIQIFTHRGQ--------------------FRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALS  157 (290)
T ss_dssp             HHHHHHHHHHHHTTC--------------------HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHhhHHhhhccc--------------------chhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhh
Confidence            999999988321100                    01125688899998866 59999999999999987432   2   


Q ss_pred             HH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHh
Q 009850          210 NK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSS  288 (524)
Q Consensus       210 ~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~  288 (524)
                      .. +.++|.++..+|++++|+..|+++....+.....              .......+...|.++...|++..|...++
T Consensus       158 ~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~l~~~d~~~A~~~~~  223 (290)
T d1qqea_         158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLS--------------QWSLKDYFLKKGLCQLAATDAVAAARTLQ  223 (290)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTT--------------GGGHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhh--------------hhhHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            22 7889999999999999999999664433322210              01122456788999999999999999999


Q ss_pred             hcccCCCCCCC
Q 009850          289 SIWQPQPCKDH  299 (524)
Q Consensus       289 ~al~~~P~~~~  299 (524)
                      ++...+|....
T Consensus       224 ~~~~~~~~~~~  234 (290)
T d1qqea_         224 EGQSEDPNFAD  234 (290)
T ss_dssp             GGGCC------
T ss_pred             HHHHhCCCccc
Confidence            99999987654

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=2.4e-12  Score=114.57  Aligned_cols=122  Identities=16%  Similarity=0.186  Sum_probs=95.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-------------HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhc
Q 009850           82 ALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQ-------------AQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQ  148 (524)
Q Consensus        82 a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~-------------~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~  148 (524)
                      .+...|..++..|+|++|+..|++++...|..             ....++..+|.+|..+|++++|+..+++++.+   
T Consensus        15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~---   91 (170)
T d1p5qa1          15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL---   91 (170)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhc---
Confidence            34445555555555555555555555554421             11245667899999999999999999999999   


Q ss_pred             cHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHH
Q 009850          149 GLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGE  227 (524)
Q Consensus       149 ~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~e  227 (524)
                                             +|+++.+++.+|.+|..+|+|++|+..|+++++++|+++. ...++.+....++..+
T Consensus        92 -----------------------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~  148 (170)
T d1p5qa1          92 -----------------------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLA  148 (170)
T ss_dssp             -----------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             -----------------------cccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence                                   9999999999999999999999999999999999999999 8888888877776665


Q ss_pred             HH
Q 009850          228 AK  229 (524)
Q Consensus       228 A~  229 (524)
                      ..
T Consensus       149 ~e  150 (170)
T d1p5qa1         149 RE  150 (170)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=2.6e-14  Score=149.64  Aligned_cols=107  Identities=9%  Similarity=-0.042  Sum_probs=53.4

Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHH
Q 009850          172 EQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLK  251 (524)
Q Consensus       172 ~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~  251 (524)
                      +|++...+.++|.++...|++++|+..+.+++..+|.. .+.++|.++...|++++|+.+|+                  
T Consensus       116 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~LG~l~~~~~~~~~A~~~y~------------------  176 (497)
T d1ya0a1         116 DLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQH-CLVHLGDIARYRNQTSQAESYYR------------------  176 (497)
T ss_dssp             ---------------------------CCHHHHHHHHH-HHHHHHHHHHHTTCHHHHHHHHH------------------
T ss_pred             ChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHHH-HHHHHHHHHHHcccHHHHHHHHH------------------
Confidence            56666667777777777777777777777776655421 16667777777777777766666                  


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCc
Q 009850          252 AYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHI  300 (524)
Q Consensus       252 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~  300 (524)
                         +++.+.|+++.+|+++|.++...|++.+|+.+|.+++..+|..+..
T Consensus       177 ---~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a  222 (497)
T d1ya0a1         177 ---HAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAA  222 (497)
T ss_dssp             ---HHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHH
T ss_pred             ---HHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHH
Confidence               6666777777777777777777777777777777777666655543

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=3.1e-12  Score=113.76  Aligned_cols=122  Identities=11%  Similarity=-0.036  Sum_probs=109.8

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 009850           47 TPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRV---------------DSALKDMAIVMKQQNRAEEAIEAIKSLRSRCS  111 (524)
Q Consensus        47 ~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~---------------~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p  111 (524)
                      ..+...|..++..|+|++|+..|++++...|..               ..++.++|.||..+|++++|+.++++++.++|
T Consensus        14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p   93 (170)
T d1p5qa1          14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS   93 (170)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhccc
Confidence            346788999999999999999999999986643               24577899999999999999999999999999


Q ss_pred             CcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 009850          112 DQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNN  191 (524)
Q Consensus       112 ~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~  191 (524)
                      +++  .+++.+|.+|..+|++++|+..|++++++                          +|+++.+...++.+....+.
T Consensus        94 ~~~--~a~~~~g~~~~~~g~~~~A~~~~~~al~l--------------------------~P~n~~~~~~l~~~~~~~~~  145 (170)
T d1p5qa1          94 NNE--KGLSRRGEAHLAVNDFELARADFQKVLQL--------------------------YPNNKAAKTQLAVCQQRIRR  145 (170)
T ss_dssp             TCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------------CSSCHHHHHHHHHHHHHHHH
T ss_pred             cch--hhhHHHHHHHHHhhhHHHHHHHHHHHHHh--------------------------CCCCHHHHHHHHHHHHHHHH
Confidence            997  78899999999999999999999999999                          99999999999999888777


Q ss_pred             HHHHH
Q 009850          192 YIEAE  196 (524)
Q Consensus       192 ~~eAi  196 (524)
                      ..+..
T Consensus       146 ~~~~e  150 (170)
T d1p5qa1         146 QLARE  150 (170)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            76554

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.41  E-value=8.8e-13  Score=108.89  Aligned_cols=93  Identities=14%  Similarity=0.064  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Q 009850           49 YVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKR  128 (524)
Q Consensus        49 ~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~  128 (524)
                      ++.+|..++..|++++|+..|++++..+|+++.+|..+|.++...|++++|+.+|+++++++|++.  .++..+|.+|..
T Consensus        19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~--~a~~~la~~y~~   96 (112)
T d1hxia_          19 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI--AVHAALAVSHTN   96 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccc--cchHHHHHHHHH
Confidence            678999999999999999999999999999999999999999999999999999999999999997  788999999999


Q ss_pred             cCChHHHHHHHHHHH
Q 009850          129 CGRLDDQIALLKHKL  143 (524)
Q Consensus       129 ~g~~~eA~~~~~~al  143 (524)
                      .|++++|++.+++.|
T Consensus        97 ~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          97 EHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999999875

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.39  E-value=2.1e-11  Score=118.80  Aligned_cols=219  Identities=8%  Similarity=-0.072  Sum_probs=179.1

Q ss_pred             HHHhcCCCChHHHHHHHHHHHHc--------------CChHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHcCCHHHHHH
Q 009850           37 HAIHKVPVGDTPYVRAKNVQLVD--------------KDPEKAIPLFWAAINA-GDRVDSALKDMAIVMKQQNRAEEAIE  101 (524)
Q Consensus        37 ~~~~~~p~~~~~~~~lg~~~~~~--------------g~~~~Ai~~~~~al~~-~p~~~~a~~~La~~~~~~g~~~eAi~  101 (524)
                      .++..+|..++.|+.-+......              +..++|...|++++.. .|.+...|..++.++...|++++|..
T Consensus        41 rAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~  120 (308)
T d2onda1          41 QCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHS  120 (308)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHH
Confidence            35566788999998877655433              3458899999999975 78889999999999999999999999


Q ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHH
Q 009850          102 AIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGN  181 (524)
Q Consensus       102 ~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~  181 (524)
                      .|++++...|.+.. .++..++....+.|+++.|..+|.+++..                          .|.....+..
T Consensus       121 i~~~~l~~~~~~~~-~~w~~~~~~~~~~~~~~~ar~i~~~al~~--------------------------~~~~~~~~~~  173 (308)
T d2onda1         121 IYNRLLAIEDIDPT-LVYIQYMKFARRAEGIKSGRMIFKKARED--------------------------ARTRHHVYVT  173 (308)
T ss_dssp             HHHHHHTSSSSCTH-HHHHHHHHHHHHHHCHHHHHHHHHHHHTS--------------------------TTCCTHHHHH
T ss_pred             HHHHHHHHhcCChH-HHHHHHHHHHHHcCChHHHHHHHHHHHHh--------------------------CCCcHHHHHH
Confidence            99999999997642 56778888899999999999999999887                          7888888988


Q ss_pred             HHHHHHH-cCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHh
Q 009850          182 LGWALMQ-QNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQM  259 (524)
Q Consensus       182 Lg~~~~~-~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~  259 (524)
                      .+..... .|+.+.|...|++++...|+++. |...+..+...|+++.|..+|++++...+..+.               
T Consensus       174 ~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~---------------  238 (308)
T d2onda1         174 AALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE---------------  238 (308)
T ss_dssp             HHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGG---------------
T ss_pred             HHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH---------------
Confidence            8887554 68999999999999999999999 999999999999999999999954333222110               


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCC
Q 009850          260 LKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  299 (524)
Q Consensus       260 ~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~  299 (524)
                        .....|......-...|+...+...++++.+..|....
T Consensus       239 --~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~~  276 (308)
T d2onda1         239 --KSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYE  276 (308)
T ss_dssp             --GCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTS
T ss_pred             --HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccccc
Confidence              12335555566666779999999999999888887655

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=1.3e-12  Score=109.64  Aligned_cols=113  Identities=14%  Similarity=0.020  Sum_probs=101.6

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 009850           51 RAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQN---RAEEAIEAIKSLRSRCSDQAQESLDNILLDLYK  127 (524)
Q Consensus        51 ~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g---~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~  127 (524)
                      .++..+...+++++|++.|++++..+|+++++++++|.++...+   ++++|+..|++++..+|.+....+++.+|.+|.
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~   83 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY   83 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence            56778889999999999999999999999999999999998754   556799999999999987755568899999999


Q ss_pred             HcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHc
Q 009850          128 RCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQ  189 (524)
Q Consensus       128 ~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~  189 (524)
                      ..|++++|+.+|++++++                          +|++..+...++.+..+.
T Consensus        84 ~~g~~~~A~~~~~~aL~~--------------------------~P~~~~A~~l~~~I~~~~  119 (122)
T d1nzna_          84 RLKEYEKALKYVRGLLQT--------------------------EPQNNQAKELERLIDKAM  119 (122)
T ss_dssp             HTTCHHHHHHHHHHHHHH--------------------------CTTCHHHHHHHHHHHHHH
T ss_pred             HHhhhHHHHHHHHHHHHh--------------------------CcCCHHHHHHHHHHHHHH
Confidence            999999999999999999                          999999999988877654

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.38  E-value=6.4e-11  Score=114.77  Aligned_cols=258  Identities=11%  Similarity=0.019  Sum_probs=177.8

Q ss_pred             hhhhhhhHH-HHhcCCCCh-----HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC------cHHHHHHHHHHHHHcCCH
Q 009850           29 SRTRSDSFH-AIHKVPVGD-----TPYVRAKNVQLVDKDPEKAIPLFWAAINAGDR------VDSALKDMAIVMKQQNRA   96 (524)
Q Consensus        29 l~~~~~~~~-~~~~~p~~~-----~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~------~~~a~~~La~~~~~~g~~   96 (524)
                      ...+...+. ++...|...     .++..+|.++...|++++|+..|++++...+.      ...++..++.++...|++
T Consensus        28 ~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (366)
T d1hz4a_          28 PDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFL  107 (366)
T ss_dssp             HHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence            333444443 345556543     47888999999999999999999999986432      245678899999999999


Q ss_pred             HHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHh-------------h--hcc
Q 009850           97 EEAIEAIKSLRSRCSD------QAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLA-------------F--NGK  155 (524)
Q Consensus        97 ~eAi~~~~~al~~~p~------~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~-------------~--~~~  155 (524)
                      ..|...+.+++.+.+.      .........+|.++...|+++.|...+.+++........             +  ...
T Consensus       108 ~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (366)
T d1hz4a_         108 QTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGD  187 (366)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhh
Confidence            9999999999876431      122356678899999999999999999999876522111             0  011


Q ss_pred             cHHHHHHHhHHHHHhcC-----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-----HHHHHHHHHHcCCH
Q 009850          156 RTKTARSQGKKFQVSVE-----QEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-----MCNLGICLMKQGRI  225 (524)
Q Consensus       156 ~~~~a~~~~~~~~~~~~-----p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-----~~~Lg~~~~~~G~~  225 (524)
                      .................     +....++..+|.++...|++++|...+++++...|.+..     +.++|.++...|++
T Consensus       188 ~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  267 (366)
T d1hz4a_         188 LDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEF  267 (366)
T ss_dssp             HHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCH
Confidence            12222222222221111     122456778888899999999999999999888766532     67789999999999


Q ss_pred             HHHHHHHHHhcccccCC-------------------CcCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHc
Q 009850          226 GEAKETLRRVKPAVADG-------------------PRGVDSHLKAYERAQQMLKD---------LESEMMNKGGDRVEQ  277 (524)
Q Consensus       226 ~eA~~~~~~a~~~~~~~-------------------~~~~~~A~~~~~~al~~~p~---------~~~a~~~lg~~~~~~  277 (524)
                      ++|+..+++++......                   .|+.++|++.+++++.+.+.         ....+..+...+...
T Consensus       268 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~  347 (366)
T d1hz4a_         268 EPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQL  347 (366)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhc
Confidence            99999998874322111                   17788888888888876442         223444555566677


Q ss_pred             CCHHHHHHH
Q 009850          278 SRLFDAFLG  286 (524)
Q Consensus       278 g~~~eAi~~  286 (524)
                      ++.+++...
T Consensus       348 ~~l~e~e~~  356 (366)
T d1hz4a_         348 NTLPELEQH  356 (366)
T ss_dssp             TCSCHHHHH
T ss_pred             CCChHHHHH
Confidence            777777654

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.38  E-value=4.5e-13  Score=116.13  Aligned_cols=121  Identities=14%  Similarity=0.063  Sum_probs=96.2

Q ss_pred             HHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHH
Q 009850           56 QLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQ  135 (524)
Q Consensus        56 ~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA  135 (524)
                      +-+.+.|++|+..|+++++++|+++++++++|.++..++++..+.+.                          .+.+++|
T Consensus         7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~--------------------------~~~~~~A   60 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDA--------------------------KQMIQEA   60 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHH--------------------------HHHHHHH
T ss_pred             HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHH--------------------------HHHHHHH
Confidence            34566688899999999999999999999999888877666555431                          2345788


Q ss_pred             HHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHh
Q 009850          136 IALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQN-----------NYIEAEDAYRRALS  204 (524)
Q Consensus       136 ~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g-----------~~~eAi~~~~~Al~  204 (524)
                      +..|++++++                          +|+++.+|+++|.+|..+|           .|++|+.+|+++++
T Consensus        61 i~~~~kAl~l--------------------------~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~  114 (145)
T d1zu2a1          61 ITKFEEALLI--------------------------DPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD  114 (145)
T ss_dssp             HHHHHHHHHH--------------------------CTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHh--------------------------cchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccc
Confidence            8888888888                          8888889999999888765           37999999999999


Q ss_pred             hCCCcHH-HHHHHHHHHHcCCHHHH
Q 009850          205 IAPDNNK-MCNLGICLMKQGRIGEA  228 (524)
Q Consensus       205 l~P~~~~-~~~Lg~~~~~~G~~~eA  228 (524)
                      ++|++.. +..|+.+....+.+.++
T Consensus       115 l~P~~~~~~~~L~~~~ka~~~~~e~  139 (145)
T d1zu2a1         115 EQPDNTHYLKSLEMTAKAPQLHAEA  139 (145)
T ss_dssp             HCTTCHHHHHHHHHHHTHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999998 88888887555444443

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.37  E-value=5.9e-12  Score=111.68  Aligned_cols=134  Identities=14%  Similarity=0.090  Sum_probs=106.0

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 009850          120 NILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAY  199 (524)
Q Consensus       120 ~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~  199 (524)
                      ...|..+...|+|.+|+..|.+++...+.......          ......++|....++.++|.++.++|+|++|+..|
T Consensus        31 ~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~----------~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~  100 (169)
T d1ihga1          31 KNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAE----------DADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSC  100 (169)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSC----------HHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhh----------hHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhh
Confidence            34566677778888888888887765322111110          00012235777889999999999999999999999


Q ss_pred             HHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 009850          200 RRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQS  278 (524)
Q Consensus       200 ~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g  278 (524)
                      .++++++|+++. |+++|.+|..+|++++|+..|+                     +++++.|++..++..++.+.....
T Consensus       101 ~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~---------------------~al~l~p~n~~~~~~l~~~~~~l~  159 (169)
T d1ihga1         101 LEALEIDPSNTKALYRRAQGWQGLKEYDQALADLK---------------------KAQEIAPEDKAIQAELLKVKQKIK  159 (169)
T ss_dssp             HHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHH---------------------HHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHH---------------------HHHHhCCCCHHHHHHHHHHHHHHH
Confidence            999999999999 9999999999999999999999                     888999999999999998887766


Q ss_pred             CHHHHH
Q 009850          279 RLFDAF  284 (524)
Q Consensus       279 ~~~eAi  284 (524)
                      ...++.
T Consensus       160 ~~~~~~  165 (169)
T d1ihga1         160 AQKDKE  165 (169)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            665543

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.37  E-value=2.9e-12  Score=105.64  Aligned_cols=94  Identities=15%  Similarity=0.049  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHH
Q 009850           82 ALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTAR  161 (524)
Q Consensus        82 a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~  161 (524)
                      .++.+|.++.+.|++++|+..|++++..+|+++  .++..+|.++...|++++|+.+|++++++                
T Consensus        18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~--~a~~~lg~~~~~~~~~~~A~~~~~~al~~----------------   79 (112)
T d1hxia_          18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPERE--EAWRSLGLTQAENEKDGLAIIALNHARML----------------   79 (112)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhhcccccccc--hhhhhhhhhhhhhhhHHHhhccccccccc----------------
Confidence            367899999999999999999999999999997  78899999999999999999999999999                


Q ss_pred             HHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009850          162 SQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRAL  203 (524)
Q Consensus       162 ~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al  203 (524)
                                +|++..+|+++|.+|...|++++|++++++.|
T Consensus        80 ----------~p~~~~a~~~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          80 ----------DPKDIAVHAALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             ----------CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----------ccccccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence                      99999999999999999999999999999976

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.37  E-value=8.1e-12  Score=109.00  Aligned_cols=81  Identities=22%  Similarity=0.240  Sum_probs=74.0

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 009850          117 SLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAE  196 (524)
Q Consensus       117 ~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi  196 (524)
                      .++..+|.+|..+|++++|+..+++++++                          +|.+..+|+++|.++..+|++++|+
T Consensus        68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~--------------------------~p~~~ka~~~~g~~~~~lg~~~~A~  121 (153)
T d2fbna1          68 SCNLNLATCYNKNKDYPKAIDHASKVLKI--------------------------DKNNVKALYKLGVANMYFGFLEEAK  121 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------------STTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHhhHHHHHHHhcccchhhhhhhccccc--------------------------cchhhhhhHHhHHHHHHcCCHHHHH
Confidence            46678999999999999999999999999                          9999999999999999999999999


Q ss_pred             HHHHHHHhhCCCcHH-HHHHHHHHHHcC
Q 009850          197 DAYRRALSIAPDNNK-MCNLGICLMKQG  223 (524)
Q Consensus       197 ~~~~~Al~l~P~~~~-~~~Lg~~~~~~G  223 (524)
                      .+|+++++++|++.. +..++.+..+++
T Consensus       122 ~~~~~al~l~P~n~~~~~~l~~~~~kl~  149 (153)
T d2fbna1         122 ENLYKAASLNPNNLDIRNSYELCVNKLK  149 (153)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            999999999999998 778887766553

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.36  E-value=5.1e-12  Score=112.07  Aligned_cols=121  Identities=11%  Similarity=-0.002  Sum_probs=109.5

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHc----------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 009850           48 PYVRAKNVQLVDKDPEKAIPLFWAAINA----------------GDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCS  111 (524)
Q Consensus        48 ~~~~lg~~~~~~g~~~~Ai~~~~~al~~----------------~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p  111 (524)
                      .+...|..++..|+|.+|+..|.+++..                +|....++.++|.++.++|++++|+..|.++++++|
T Consensus        29 ~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p  108 (169)
T d1ihga1          29 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP  108 (169)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhh
Confidence            3667899999999999999999999863                456677889999999999999999999999999999


Q ss_pred             CcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 009850          112 DQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNN  191 (524)
Q Consensus       112 ~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~  191 (524)
                      +++  .+++.+|.+|..+|++++|+..|++++++                          +|++..++..++.+......
T Consensus       109 ~~~--~a~~~~g~~~~~l~~~~~A~~~~~~al~l--------------------------~p~n~~~~~~l~~~~~~l~~  160 (169)
T d1ihga1         109 SNT--KALYRRAQGWQGLKEYDQALADLKKAQEI--------------------------APEDKAIQAELLKVKQKIKA  160 (169)
T ss_dssp             TCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------------CTTCHHHHHHHHHHHHHHHH
T ss_pred             hhh--hHHHhHHHHHHHccCHHHHHHHHHHHHHh--------------------------CCCCHHHHHHHHHHHHHHHH
Confidence            998  78899999999999999999999999999                          99999999999999887776


Q ss_pred             HHHHH
Q 009850          192 YIEAE  196 (524)
Q Consensus       192 ~~eAi  196 (524)
                      +.++.
T Consensus       161 ~~~~~  165 (169)
T d1ihga1         161 QKDKE  165 (169)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66654

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.35  E-value=8.2e-12  Score=108.94  Aligned_cols=115  Identities=11%  Similarity=0.003  Sum_probs=103.2

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 009850           48 PYVRAKNVQLVDKDPEKAIPLFWAAINAGDRV----------------DSALKDMAIVMKQQNRAEEAIEAIKSLRSRCS  111 (524)
Q Consensus        48 ~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~----------------~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p  111 (524)
                      .+...|..++..|+|.+|+..|.+++...+..                ..++.++|.+|..+|++++|+.++++++.++|
T Consensus        19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p   98 (153)
T d2fbna1          19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK   98 (153)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccccc
Confidence            46778999999999999999999999864421                23577899999999999999999999999999


Q ss_pred             CcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 009850          112 DQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQN  190 (524)
Q Consensus       112 ~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g  190 (524)
                      .+.  .+++.+|.+|..+|++++|+..|++++++                          +|++..+...++.+..+.+
T Consensus        99 ~~~--ka~~~~g~~~~~lg~~~~A~~~~~~al~l--------------------------~P~n~~~~~~l~~~~~kl~  149 (153)
T d2fbna1          99 NNV--KALYKLGVANMYFGFLEEAKENLYKAASL--------------------------NPNNLDIRNSYELCVNKLK  149 (153)
T ss_dssp             TCH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------------------------STTCHHHHHHHHHHHHHHH
T ss_pred             hhh--hhhHHhHHHHHHcCCHHHHHHHHHHHHHh--------------------------CCCCHHHHHHHHHHHHHHH
Confidence            997  78899999999999999999999999999                          9999999999988876554

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.35  E-value=1.7e-11  Score=108.54  Aligned_cols=120  Identities=16%  Similarity=0.141  Sum_probs=94.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-------------HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhc
Q 009850           82 ALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQ-------------AQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQ  148 (524)
Q Consensus        82 a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~-------------~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~  148 (524)
                      .+...|..++..|+|.+|+..|++++...+..             ....++..+|.+|..+|++++|+..+++++.+   
T Consensus        17 ~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l---   93 (168)
T d1kt1a1          17 IVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL---   93 (168)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhc---
Confidence            34445555555555555555555555433211             11356677899999999999999999999999   


Q ss_pred             cHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHH
Q 009850          149 GLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGE  227 (524)
Q Consensus       149 ~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~e  227 (524)
                                             +|++..+++++|.++..+|+|++|+..|++++.++|++.. +..++.+....+.+.+
T Consensus        94 -----------------------~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e  150 (168)
T d1kt1a1          94 -----------------------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNE  150 (168)
T ss_dssp             -----------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             -----------------------ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHH
Confidence                                   9999999999999999999999999999999999999998 8888888877766554

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.34  E-value=3.1e-11  Score=117.52  Aligned_cols=189  Identities=7%  Similarity=-0.048  Sum_probs=162.7

Q ss_pred             hHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHH
Q 009850           62 PEKAIPLFWAAINAGDRVDSALKDMAIVMKQQ--------------NRAEEAIEAIKSLRSR-CSDQAQESLDNILLDLY  126 (524)
Q Consensus        62 ~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~--------------g~~~eAi~~~~~al~~-~p~~~~~~l~~~lg~~~  126 (524)
                      .+.+...|++|+...|.++..|...+..+...              +..++|...|++++.. .|.+.  .++..++.++
T Consensus        32 ~~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~--~l~~~ya~~~  109 (308)
T d2onda1          32 TKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNM--LLYFAYADYE  109 (308)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCH--HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCH--HHHHHHHHHH
Confidence            45678899999999999999999887765433              3468899999999985 56665  6788889999


Q ss_pred             HHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 009850          127 KRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEA-TRLLGNLGWALMQQNNYIEAEDAYRRALSI  205 (524)
Q Consensus       127 ~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~-~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l  205 (524)
                      ...|++++|...|++++..                          .|.+ ..+|..++....+.|+++.|...|++++..
T Consensus       110 ~~~~~~~~a~~i~~~~l~~--------------------------~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~  163 (308)
T d2onda1         110 ESRMKYEKVHSIYNRLLAI--------------------------EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED  163 (308)
T ss_dssp             HHTTCHHHHHHHHHHHHTS--------------------------SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS
T ss_pred             HhcccHHHHHHHHHHHHHH--------------------------hcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence            9999999999999999987                          6765 457899999999999999999999999999


Q ss_pred             CCCcHH-HHHHHHHHHH-cCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 009850          206 APDNNK-MCNLGICLMK-QGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDA  283 (524)
Q Consensus       206 ~P~~~~-~~~Lg~~~~~-~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA  283 (524)
                      .|.... |...|..... .|+.+.|...|+                     +++...|+.+..+...+..+...|+++.|
T Consensus       164 ~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e---------------------~~l~~~p~~~~~w~~y~~~~~~~g~~~~a  222 (308)
T d2onda1         164 ARTRHHVYVTAALMEYYCSKDKSVAFKIFE---------------------LGLKKYGDIPEYVLAYIDYLSHLNEDNNT  222 (308)
T ss_dssp             TTCCTHHHHHHHHHHHHTSCCHHHHHHHHH---------------------HHHHHHTTCHHHHHHHHHHHHTTCCHHHH
T ss_pred             CCCcHHHHHHHHHHHHHhccCHHHHHHHHH---------------------HHHHhhhhhHHHHHHHHHHHHHcCChHHH
Confidence            999988 7777776544 578888888888                     77888899999999999999999999999


Q ss_pred             HHHHhhcccCCCCCCC
Q 009850          284 FLGSSSIWQPQPCKDH  299 (524)
Q Consensus       284 i~~~~~al~~~P~~~~  299 (524)
                      +..|+++++..|.++.
T Consensus       223 R~~fe~ai~~~~~~~~  238 (308)
T d2onda1         223 RVLFERVLTSGSLPPE  238 (308)
T ss_dssp             HHHHHHHHHSSSSCGG
T ss_pred             HHHHHHHHHhCCCChH
Confidence            9999999998876654

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.33  E-value=2.1e-11  Score=107.97  Aligned_cols=130  Identities=8%  Similarity=-0.040  Sum_probs=111.5

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC---------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 009850           47 TPYVRAKNVQLVDKDPEKAIPLFWAAINAGDR---------------VDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCS  111 (524)
Q Consensus        47 ~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~---------------~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p  111 (524)
                      ..+...|..++..|+|.+|+..|.+++...+.               ...++.++|.||..+|++++|+..+++++.++|
T Consensus        16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p   95 (168)
T d1kt1a1          16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS   95 (168)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhccc
Confidence            45778999999999999999999999975322               224577899999999999999999999999999


Q ss_pred             CcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 009850          112 DQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNN  191 (524)
Q Consensus       112 ~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~  191 (524)
                      ++.  ..++.+|.+|..+|++++|+..|.+++.+                          +|++..++..++.+....+.
T Consensus        96 ~~~--~a~~~~~~~~~~l~~~~~A~~~~~~al~l--------------------------~P~n~~~~~~l~~~~~~~~~  147 (168)
T d1kt1a1          96 ANE--KGLYRRGEAQLLMNEFESAKGDFEKVLEV--------------------------NPQNKAARLQIFMCQKKAKE  147 (168)
T ss_dssp             TCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHS--------------------------CTTCHHHHHHHHHHHHHHHH
T ss_pred             chH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------------------CCCCHHHHHHHHHHHHHHHh
Confidence            997  78889999999999999999999999998                          99999999999999888776


Q ss_pred             HHH-HHHHHHHHHh
Q 009850          192 YIE-AEDAYRRALS  204 (524)
Q Consensus       192 ~~e-Ai~~~~~Al~  204 (524)
                      +.+ ....|.+.++
T Consensus       148 ~~e~~kk~~~~~f~  161 (168)
T d1kt1a1         148 HNERDRRTYANMFK  161 (168)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            654 4455444443

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=1.3e-11  Score=104.28  Aligned_cols=99  Identities=12%  Similarity=0.020  Sum_probs=90.9

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-----HHHHHHH
Q 009850           47 TPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQA-----QESLDNI  121 (524)
Q Consensus        47 ~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~-----~~~l~~~  121 (524)
                      ..+-.+|..++..|+|++|+.+|+++++++|++..++.++|.+|..+|+|++|+..+++++.++|.+.     ...++..
T Consensus         5 ~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~   84 (128)
T d1elra_           5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR   84 (128)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            34678999999999999999999999999999999999999999999999999999999999988542     1357788


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHH
Q 009850          122 LLDLYKRCGRLDDQIALLKHKLYL  145 (524)
Q Consensus       122 lg~~~~~~g~~~eA~~~~~~al~l  145 (524)
                      +|.++...+++++|+.+|++++..
T Consensus        85 lg~~~~~~~~~~~A~~~~~kal~~  108 (128)
T d1elra_          85 IGNSYFKEEKYKDAIHFYNKSLAE  108 (128)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHhc
Confidence            999999999999999999999887

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=2.9e-12  Score=107.41  Aligned_cols=109  Identities=8%  Similarity=-0.022  Sum_probs=95.6

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcC---CHHHHHH
Q 009850          121 ILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQN---NYIEAED  197 (524)
Q Consensus       121 ~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g---~~~eAi~  197 (524)
                      .++..+...+++++|++.|++++.+                          +|+++.+++++|+++.+.+   ++++|+.
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~--------------------------~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~   57 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAA--------------------------GSVSKSTQFEYAWCLVRTRYNDDIRKGIV   57 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH--------------------------SCCCHHHHHHHHHHHTTSSSHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhh--------------------------CCCCHHHHHHHHHHHHHhcchHHHHHHHH
Confidence            3455667889999999999999999                          9999999999999998754   5567999


Q ss_pred             HHHHHHhhCCCcH--H-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 009850          198 AYRRALSIAPDNN--K-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDR  274 (524)
Q Consensus       198 ~~~~Al~l~P~~~--~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~  274 (524)
                      .|++++..+|.+.  . |+++|.+|.++|++++|+.+|+                     ++++++|++..+...++.+.
T Consensus        58 ~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~---------------------~aL~~~P~~~~A~~l~~~I~  116 (122)
T d1nzna_          58 LLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVR---------------------GLLQTEPQNNQAKELERLID  116 (122)
T ss_dssp             HHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH---------------------HHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHhccCCchHHHHHHHHHHHHHHHhhhHHHHHHHH---------------------HHHHhCcCCHHHHHHHHHHH
Confidence            9999999988664  3 8999999999999999999999                     88999999999988888766


Q ss_pred             HH
Q 009850          275 VE  276 (524)
Q Consensus       275 ~~  276 (524)
                      .+
T Consensus       117 ~~  118 (122)
T d1nzna_         117 KA  118 (122)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.30  E-value=8.3e-12  Score=107.93  Aligned_cols=118  Identities=14%  Similarity=0.084  Sum_probs=100.2

Q ss_pred             HHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHc----------CCHHHH
Q 009850          126 YKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQ----------NNYIEA  195 (524)
Q Consensus       126 ~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~----------g~~~eA  195 (524)
                      |.+++.|++|+..|++++++                          +|+++.+++++|.++...          +.+++|
T Consensus         7 ~~r~~~fe~A~~~~e~al~~--------------------------~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~A   60 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKS--------------------------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEA   60 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH--------------------------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             HHHHccHHHHHHHHHHHHhh--------------------------CCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence            45678899999999999999                          999999999999999854          556899


Q ss_pred             HHHHHHHHhhCCCcHH-HHHHHHHHHHcCC----HHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 009850          196 EDAYRRALSIAPDNNK-MCNLGICLMKQGR----IGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNK  270 (524)
Q Consensus       196 i~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~----~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l  270 (524)
                      +..|++|++++|++.. |+++|.+|..+|+    ...+...|+              .|++.|++++.++|++..++..+
T Consensus        61 i~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~--------------~A~~~~~kal~l~P~~~~~~~~L  126 (145)
T d1zu2a1          61 ITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFD--------------LATQFFQQAVDEQPDNTHYLKSL  126 (145)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH--------------HHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHH--------------HhhhhhhcccccCCCHHHHHHHH
Confidence            9999999999999999 9999999988764    445555554              57788889999999999999999


Q ss_pred             HHHHHHcCCHHHH
Q 009850          271 GGDRVEQSRLFDA  283 (524)
Q Consensus       271 g~~~~~~g~~~eA  283 (524)
                      +.+....+.+.++
T Consensus       127 ~~~~ka~~~~~e~  139 (145)
T d1zu2a1         127 EMTAKAPQLHAEA  139 (145)
T ss_dssp             HHHHTHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9887665555543

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=4.4e-11  Score=100.87  Aligned_cols=111  Identities=9%  Similarity=0.108  Sum_probs=93.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHH
Q 009850           80 DSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKT  159 (524)
Q Consensus        80 ~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~  159 (524)
                      +..+..+|..++..|+|++|+.+|++++.++|++.  .++..+|.+|..+|++++|+..|++++++.+......      
T Consensus         4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~--~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~------   75 (128)
T d1elra_           4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNM--TYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDY------   75 (128)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCH------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH--HHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHH------
Confidence            34577899999999999999999999999999987  7889999999999999999999999999843211100      


Q ss_pred             HHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q 009850          160 ARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK  211 (524)
Q Consensus       160 a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~  211 (524)
                                   +....++..+|.++...+++++|+.+|++++..+++...
T Consensus        76 -------------~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~~  114 (128)
T d1elra_          76 -------------RQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDV  114 (128)
T ss_dssp             -------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHH
T ss_pred             -------------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCHHH
Confidence                         111458889999999999999999999999998886544

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.26  E-value=6.7e-10  Score=104.96  Aligned_cols=218  Identities=14%  Similarity=0.077  Sum_probs=162.2

Q ss_pred             ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 009850           45 GDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQ----QNRAEEAIEAIKSLRSRCSDQAQESLDN  120 (524)
Q Consensus        45 ~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~----~g~~~eAi~~~~~al~~~p~~~~~~l~~  120 (524)
                      ++.+++.||..++..|++++|+.+|+++.+.  ++..+++.||.+|..    ..++..|..+++.+......    ....
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~----~a~~   74 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYS----NGCH   74 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH----HHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccccc----chhh
Confidence            3678999999999999999999999999775  578999999999998    67999999999998876533    3335


Q ss_pred             HHHHHHHH----cCChHHHHHHHHHHHHHhhccH------hhh-c----ccHHHHHHHhHHHHHhcCCCcHHHHHHHHHH
Q 009850          121 ILLDLYKR----CGRLDDQIALLKHKLYLIQQGL------AFN-G----KRTKTARSQGKKFQVSVEQEATRLLGNLGWA  185 (524)
Q Consensus       121 ~lg~~~~~----~g~~~eA~~~~~~al~l~~~~~------~~~-~----~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~  185 (524)
                      .+|.++..    ..+.+.|...++++........      ... .    .....+.   .......++.+...+++||.+
T Consensus        75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~---~~~~~~~~~~~~~~~~~L~~~  151 (265)
T d1ouva_          75 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAV---EYFTKACDLNDGDGCTILGSL  151 (265)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHH---HHHHHHHHTTCHHHHHHHHHH
T ss_pred             ccccccccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHH---HHhhhhhcccccchhhhhhhh
Confidence            56666544    4678999999999886542111      111 0    1111111   112223357788899999999


Q ss_pred             HHH----cCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHH----cCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHH
Q 009850          186 LMQ----QNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMK----QGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERA  256 (524)
Q Consensus       186 ~~~----~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~----~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~a  256 (524)
                      +..    ..+...+..+++.+.+  +.++. ++++|.+|..    ..++++|+.+|+                     ++
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~---------------------~a  208 (265)
T d1ouva_         152 YDAGRGTPKDLKKALASYDKACD--LKDSPGCFNAGNMYHHGEGATKNFKEALARYS---------------------KA  208 (265)
T ss_dssp             HHHTSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHH---------------------HH
T ss_pred             hccCCCcccccccchhhhhcccc--ccccccccchhhhcccCcccccchhhhhhhHh---------------------hh
Confidence            987    4577888888888876  44666 8999999987    567888888888                     44


Q ss_pred             HHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHhhcccCCCC
Q 009850          257 QQMLKDLESEMMNKGGDRVE----QSRLFDAFLGSSSIWQPQPC  296 (524)
Q Consensus       257 l~~~p~~~~a~~~lg~~~~~----~g~~~eAi~~~~~al~~~P~  296 (524)
                      .+.  +++.+.++||.+|..    ..++.+|+..|+++......
T Consensus       209 a~~--g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~  250 (265)
T d1ouva_         209 CEL--ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK  250 (265)
T ss_dssp             HHT--TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred             hcc--cCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence            444  567899999999986    34789999999998766543

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=5e-11  Score=124.19  Aligned_cols=211  Identities=14%  Similarity=0.024  Sum_probs=122.7

Q ss_pred             HHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-HH
Q 009850           37 HAIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQ-AQ  115 (524)
Q Consensus        37 ~~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~-~~  115 (524)
                      +++...|...++|+++|.++..+|++++|   |+++|..+|+...++...+.+..  ..|..+++.+++..+..... ..
T Consensus        11 qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw~--~~y~~~ie~~r~~~k~~~~~~~~   85 (497)
T d1ya0a1          11 QAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLWN--HAFKNQITTLQGQAKNRANPNRS   85 (497)
T ss_dssp             HHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHHH--HHTHHHHHHHHHHHSCSSCTTTT
T ss_pred             HHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHHHH--HHHHHHHHHHHHhcccccCccHH
Confidence            44455566666777888888888888776   77777777776655433332221  12444555555554433211 00


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHh--------hhc-ccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHH
Q 009850          116 ESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLA--------FNG-KRTKTARSQGKKFQVSVEQEATRLLGNLGWAL  186 (524)
Q Consensus       116 ~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~--------~~~-~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~  186 (524)
                      ......++.++...+.|+.|+..|.+++.+.+....        +.. .....+.....   ..+.++...++.++|.++
T Consensus        86 ~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~---~al~~~~~~~~~~LG~l~  162 (497)
T d1ya0a1          86 EVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQS---SSCSYICQHCLVHLGDIA  162 (497)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CC---HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHH---HHhCCCHHHHHHHHHHHH
Confidence            011122333344445555555555555444311111        000 01111111000   001122346889999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHH
Q 009850          187 MQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLES  265 (524)
Q Consensus       187 ~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~  265 (524)
                      ...|+|++|+.+|++|+.++|++.. |++||.++...|++.+|+.+|.                     +++...|.++.
T Consensus       163 ~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~---------------------ral~~~~~~~~  221 (497)
T d1ya0a1         163 RYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYC---------------------RSIAVKFPFPA  221 (497)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHH---------------------HHHSSSBCCHH
T ss_pred             HHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHH---------------------HHHhCCCCCHH
Confidence            9999999999999999999999999 9999999999999999999999                     55556666666


Q ss_pred             HHHHHHHHHHH
Q 009850          266 EMMNKGGDRVE  276 (524)
Q Consensus       266 a~~~lg~~~~~  276 (524)
                      ++.+|+.++..
T Consensus       222 a~~nL~~~~~~  232 (497)
T d1ya0a1         222 ASTNLQKALSK  232 (497)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            66666655544

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=8e-10  Score=87.78  Aligned_cols=79  Identities=15%  Similarity=0.055  Sum_probs=69.7

Q ss_pred             ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 009850           45 GDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDR-------VDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQES  117 (524)
Q Consensus        45 ~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~-------~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~  117 (524)
                      ..+.++.+|.+++..|+|.+|+.+|++|+++.|.       ...++.+||.++.++|++++|+.+|+++++++|+++  .
T Consensus         4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~--~   81 (95)
T d1tjca_           4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQ--R   81 (95)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--H
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCH--H
Confidence            4567899999999999999999999999987443       478899999999999999999999999999999997  5


Q ss_pred             HHHHHHHH
Q 009850          118 LDNILLDL  125 (524)
Q Consensus       118 l~~~lg~~  125 (524)
                      ++..++.+
T Consensus        82 a~~Nl~~~   89 (95)
T d1tjca_          82 ANGNLKYF   89 (95)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66666544

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.01  E-value=1.3e-09  Score=94.76  Aligned_cols=99  Identities=14%  Similarity=0.079  Sum_probs=84.8

Q ss_pred             HHHHH--HHHHHHcCChHHHHHHHHHHHHcCCCc------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-
Q 009850           48 PYVRA--KNVQLVDKDPEKAIPLFWAAINAGDRV------------DSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSD-  112 (524)
Q Consensus        48 ~~~~l--g~~~~~~g~~~~Ai~~~~~al~~~p~~------------~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~-  112 (524)
                      +|..+  |..++..|+|++|+..|++++.+.|+.            ..+|.++|.+|..+|++++|+..+++++.+.|. 
T Consensus         9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~   88 (156)
T d2hr2a1           9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   88 (156)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence            44444  889999999999999999999987653            467889999999999999999999999987552 


Q ss_pred             ------c--HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Q 009850          113 ------Q--AQESLDNILLDLYKRCGRLDDQIALLKHKLYLI  146 (524)
Q Consensus       113 ------~--~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~  146 (524)
                            .  ....+++.+|.+|..+|++++|+..|++++++.
T Consensus        89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~  130 (156)
T d2hr2a1          89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI  130 (156)
T ss_dssp             CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence                  1  224567889999999999999999999999984

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.00  E-value=1.3e-09  Score=94.84  Aligned_cols=115  Identities=10%  Similarity=0.017  Sum_probs=89.0

Q ss_pred             HHHHHHH--HHHHHHcCCHHHHHHHHHHHHHhCCCcH----------HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhh
Q 009850           80 DSALKDM--AIVMKQQNRAEEAIEAIKSLRSRCSDQA----------QESLDNILLDLYKRCGRLDDQIALLKHKLYLIQ  147 (524)
Q Consensus        80 ~~a~~~L--a~~~~~~g~~~eAi~~~~~al~~~p~~~----------~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~  147 (524)
                      ..++..+  |..++..|+|++|+..|++++.+.|..+          ...++..+|.+|..+|++++|+..+++++.+.+
T Consensus         7 a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~   86 (156)
T d2hr2a1           7 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN   86 (156)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccc
Confidence            3455544  8889999999999999999999987532          235788999999999999999999999998843


Q ss_pred             ccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 009850          148 QGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDN  209 (524)
Q Consensus       148 ~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~  209 (524)
                      ........               ..+....+++++|.+|..+|++++|+.+|++++++.|+.
T Consensus        87 ~~~~~~~~---------------~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~  133 (156)
T d2hr2a1          87 RRGELNQD---------------EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER  133 (156)
T ss_dssp             HHCCTTST---------------HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             cccccccc---------------ccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence            21111000               011234578999999999999999999999999986644

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.98  E-value=3.4e-10  Score=107.53  Aligned_cols=131  Identities=14%  Similarity=-0.006  Sum_probs=93.6

Q ss_pred             HHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChH
Q 009850           54 NVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLD  133 (524)
Q Consensus        54 ~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~  133 (524)
                      ...+..|++++|+..|+++++.+|++..++..+|.+|+..|++++|+..|+++++++|++.  ..+..++.++...+..+
T Consensus         4 ~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~--~~~~~l~~ll~a~~~~~   81 (264)
T d1zbpa1           4 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL--PGASQLRHLVKAAQARK   81 (264)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH--HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHhccccH
Confidence            3456788888888888888888888888888888888888888888888888888888876  45555665554444433


Q ss_pred             HHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q 009850          134 DQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK  211 (524)
Q Consensus       134 eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~  211 (524)
                      ++...+.+...                         ..+|.....+...+.++...|++++|+..+.++.+..|..+.
T Consensus        82 ~a~~~~~~~~~-------------------------~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~  134 (264)
T d1zbpa1          82 DFAQGAATAKV-------------------------LGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF  134 (264)
T ss_dssp             HHTTSCCCEEC-------------------------CCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred             HHHHHhhhhhc-------------------------ccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCc
Confidence            33222211110                         014555666777788888888888888888888888887765

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=1.6e-09  Score=85.93  Aligned_cols=81  Identities=14%  Similarity=0.042  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc-------HH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHH
Q 009850          176 TRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDN-------NK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVD  247 (524)
Q Consensus       176 ~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~-------~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~  247 (524)
                      ++-++.+|.++++.|+|.+|+.+|++|+++.|.+       .. +.++|.++.++|++++|+.+|+              
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~--------------   70 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTK--------------   70 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHH--------------
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHH--------------
Confidence            4568899999999999999999999999986543       34 8899999999999999999999              


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 009850          248 SHLKAYERAQQMLKDLESEMMNKGGDRVEQ  277 (524)
Q Consensus       248 ~A~~~~~~al~~~p~~~~a~~~lg~~~~~~  277 (524)
                             ++++++|+++.++.+++.+...+
T Consensus        71 -------~aL~l~P~~~~a~~Nl~~~~~~l   93 (95)
T d1tjca_          71 -------KLLELDPEHQRANGNLKYFEYIM   93 (95)
T ss_dssp             -------HHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             -------HHHHhCcCCHHHHHHHHHHHHHh
Confidence                   88999999999999998766543

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.81  E-value=1.8e-08  Score=89.58  Aligned_cols=116  Identities=13%  Similarity=-0.007  Sum_probs=87.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHH
Q 009850           80 DSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKT  159 (524)
Q Consensus        80 ~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~  159 (524)
                      .+.+...|......|++++|+..|.+++.+.+......  .       ..+.+-.     .....+              
T Consensus        11 f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~--~-------~~~~w~~-----~~r~~l--------------   62 (179)
T d2ff4a2          11 FVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDD--L-------RDFQFVE-----PFATAL--------------   62 (179)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGG--G-------TTSTTHH-----HHHHHH--------------
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccccccc--C-------cchHHHH-----HHHHHH--------------
Confidence            45566777777778888888888888887777653110  0       0111111     111111              


Q ss_pred             HHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHh
Q 009850          160 ARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRV  235 (524)
Q Consensus       160 a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a  235 (524)
                                  .+....++.+++.++...|++++|+.++++++.++|.+.. |.+++.++..+|++.+|+..|+++
T Consensus        63 ------------~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~  127 (179)
T d2ff4a2          63 ------------VEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV  127 (179)
T ss_dssp             ------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             ------------HHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence                        2345668899999999999999999999999999999999 999999999999999999999975

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.79  E-value=5.4e-09  Score=99.06  Aligned_cols=120  Identities=12%  Similarity=0.017  Sum_probs=102.5

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHH
Q 009850           88 IVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKF  167 (524)
Q Consensus        88 ~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~  167 (524)
                      .-....|++++|+..|+++++.+|+++  .++..++.+|+..|++++|+..|++++++                      
T Consensus         4 ~~aL~~G~l~eAl~~l~~al~~~P~d~--~ar~~La~lL~~~G~~e~A~~~l~~a~~l----------------------   59 (264)
T d1zbpa1           4 KNALSEGQLQQALELLIEAIKASPKDA--SLRSSFIELLCIDGDFERADEQLMQSIKL----------------------   59 (264)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------------------
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHh----------------------
Confidence            345678999999999999999999998  78899999999999999999999999999                      


Q ss_pred             HHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCcHH-HHHHHHHHHHcCCHHHHHHHHHHh
Q 009850          168 QVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIA-PDNNK-MCNLGICLMKQGRIGEAKETLRRV  235 (524)
Q Consensus       168 ~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a  235 (524)
                          +|++..++..++.++...+..+++...+.+..... |.... +...+.++...|++++|...++++
T Consensus        60 ----~P~~~~~~~~l~~ll~a~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a  125 (264)
T d1zbpa1          60 ----FPEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQI  125 (264)
T ss_dssp             ----CGGGHHHHHHHHHHHHHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             ----CCCcHHHHHHHHHHHHhccccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence                89999999999999988888887776655544443 43333 777899999999999999999943

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.73  E-value=2.6e-08  Score=88.58  Aligned_cols=117  Identities=17%  Similarity=-0.005  Sum_probs=90.3

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 009850           47 TPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLY  126 (524)
Q Consensus        47 ~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~  126 (524)
                      +.++..|......|++++|+..|.+++.+.++........       +.+     .......+.+..  ..++..++.++
T Consensus        12 ~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~-------~~w-----~~~~r~~l~~~~--~~a~~~la~~~   77 (179)
T d2ff4a2          12 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRD-------FQF-----VEPFATALVEDK--VLAHTAKAEAE   77 (179)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTT-------STT-----HHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcc-------hHH-----HHHHHHHHHHHH--HHHHHHHHHHH
Confidence            4678899999999999999999999999987654221111       111     111112222222  25667889999


Q ss_pred             HHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009850          127 KRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRAL  203 (524)
Q Consensus       127 ~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al  203 (524)
                      ...|++++|+.++++++.+                          +|.+..+|..++.+|...|++.+|+..|+++.
T Consensus        78 ~~~g~~~~Al~~~~~al~~--------------------------~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~  128 (179)
T d2ff4a2          78 IACGRASAVIAELEALTFE--------------------------HPYREPLWTQLITAYYLSDRQSDALGAYRRVK  128 (179)
T ss_dssp             HHTTCHHHHHHHHHHHHHH--------------------------STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHCCCchHHHHHHHHHHHh--------------------------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            9999999999999999998                          89999999999999999999999999999883

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.64  E-value=9.1e-07  Score=82.65  Aligned_cols=195  Identities=13%  Similarity=0.138  Sum_probs=138.5

Q ss_pred             hhhhhhhHHHHhcCCCChHHHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH----cCCHHHHH
Q 009850           29 SRTRSDSFHAIHKVPVGDTPYVRAKNVQLV----DKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQ----QNRAEEAI  100 (524)
Q Consensus        29 l~~~~~~~~~~~~~p~~~~~~~~lg~~~~~----~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~----~g~~~eAi  100 (524)
                      ..++...|+..... ...++++.||.++..    ..++..|..++..+....  ++.+...+|.++..    ..+.+.|+
T Consensus        18 ~~~A~~~~~kAa~~-g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--~~~a~~~l~~~~~~~~~~~~~~~~a~   94 (265)
T d1ouva_          18 FTQAKKYFEKACDL-KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKAL   94 (265)
T ss_dssp             HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred             HHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc--ccchhhccccccccccccchhhHHHH
Confidence            44555666655544 467899999999998    789999999999987654  67888899988876    46889999


Q ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHhh------ccHhhhc-----ccHHHHHHHhH
Q 009850          101 EAIKSLRSRCSDQAQESLDNILLDLYKR----CGRLDDQIALLKHKLYLIQ------QGLAFNG-----KRTKTARSQGK  165 (524)
Q Consensus       101 ~~~~~al~~~p~~~~~~l~~~lg~~~~~----~g~~~eA~~~~~~al~l~~------~~~~~~~-----~~~~~a~~~~~  165 (524)
                      ..++++....+....    ..++..+..    ......|...+........      .+..+..     .......   .
T Consensus        95 ~~~~~a~~~g~~~a~----~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~---~  167 (265)
T d1ouva_          95 QYYSKACDLKYAEGC----ASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKAL---A  167 (265)
T ss_dssp             HHHHHHHHTTCHHHH----HHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHH---H
T ss_pred             HHHhhhhhhhhhhHH----HhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhhhhccCCCcccccccch---h
Confidence            999999987765542    334444443    4456777777776655431      1111111     1111111   1


Q ss_pred             HHHHhcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHH----cCCHHHHHHHHHHh
Q 009850          166 KFQVSVEQEATRLLGNLGWALMQ----QNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMK----QGRIGEAKETLRRV  235 (524)
Q Consensus       166 ~~~~~~~p~~~~a~~~Lg~~~~~----~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~----~G~~~eA~~~~~~a  235 (524)
                      .+....+++++.+++++|.+|..    ..++++|+.+|+++.+..  ++. +++||.+|..    ..++.+|+.+|+++
T Consensus       168 ~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kA  244 (265)
T d1ouva_         168 SYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKG  244 (265)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHH
T ss_pred             hhhccccccccccccchhhhcccCcccccchhhhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHH
Confidence            22233367889999999999987    679999999999998864  566 8999999986    34788999999965

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.05  E-value=3.1e-05  Score=64.31  Aligned_cols=112  Identities=15%  Similarity=0.096  Sum_probs=78.8

Q ss_pred             CChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH----cCChHHH
Q 009850           60 KDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKR----CGRLDDQ  135 (524)
Q Consensus        60 g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~----~g~~~eA  135 (524)
                      .|+++|+.+|+++.+.+  ++.+.+.||.  ....++++|+.+|+++.+..  ++  ...+.+|.+|..    ..++++|
T Consensus         7 kd~~~A~~~~~kaa~~g--~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~g--~~--~a~~~Lg~~y~~g~~~~~d~~~A   78 (133)
T d1klxa_           7 KDLKKAIQYYVKACELN--EMFGCLSLVS--NSQINKQKLFQYLSKACELN--SG--NGCRFLGDFYENGKYVKKDLRKA   78 (133)
T ss_dssp             HHHHHHHHHHHHHHHTT--CTTHHHHHHT--CTTSCHHHHHHHHHHHHHTT--CH--HHHHHHHHHHHHCSSSCCCHHHH
T ss_pred             cCHHHHHHHHHHHHHCC--Chhhhhhhcc--ccccCHHHHHHHHhhhhccc--ch--hhhhhHHHhhhhccccchhhHHH
Confidence            46788888888887764  4455666654  33457888888888877653  33  344667777665    4567888


Q ss_pred             HHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCC
Q 009850          136 IALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQ----QNNYIEAEDAYRRALSIAP  207 (524)
Q Consensus       136 ~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~----~g~~~eAi~~~~~Al~l~P  207 (524)
                      +.+|+++.+.                            +++.+.++||.+|..    ..++.+|+.+|++|.+...
T Consensus        79 ~~~~~~aa~~----------------------------g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~  126 (133)
T d1klxa_          79 AQYYSKACGL----------------------------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  126 (133)
T ss_dssp             HHHHHHHHHT----------------------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHhhhhcc----------------------------CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence            8888887654                            567788888888876    4578888888888877543

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.88  E-value=7.5e-05  Score=60.57  Aligned_cols=87  Identities=7%  Similarity=-0.055  Sum_probs=70.3

Q ss_pred             hhhhhhhHHHHhcCCCChHHHHHHHHHHHHcCC---hHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHcCCHHHHHHHHH
Q 009850           29 SRTRSDSFHAIHKVPVGDTPYVRAKNVQLVDKD---PEKAIPLFWAAINAGDRV-DSALKDMAIVMKQQNRAEEAIEAIK  104 (524)
Q Consensus        29 l~~~~~~~~~~~~~p~~~~~~~~lg~~~~~~g~---~~~Ai~~~~~al~~~p~~-~~a~~~La~~~~~~g~~~eAi~~~~  104 (524)
                      +......+..-..-.....+.|+.|.++....+   .++|+.+++.+++.+|.+ .++++.||..|+++|+|++|..+++
T Consensus        18 l~~~~~q~~~e~~~~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~   97 (124)
T d2pqrb1          18 LEILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVD   97 (124)
T ss_dssp             HHHHHHHHHHTTGGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            444444444442222456789999999997754   569999999999999876 5899999999999999999999999


Q ss_pred             HHHHhCCCcHH
Q 009850          105 SLRSRCSDQAQ  115 (524)
Q Consensus       105 ~al~~~p~~~~  115 (524)
                      ++++++|++..
T Consensus        98 ~~L~ieP~n~q  108 (124)
T d2pqrb1          98 TLFEHERNNKQ  108 (124)
T ss_dssp             HHHHHCTTCHH
T ss_pred             HHHccCCCcHH
Confidence            99999999963

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.87  E-value=0.00012  Score=59.25  Aligned_cols=77  Identities=14%  Similarity=0.059  Sum_probs=65.2

Q ss_pred             HHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCcH-H-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHH
Q 009850          176 TRLLGNLGWALMQQNN---YIEAEDAYRRALSIAPDNN-K-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHL  250 (524)
Q Consensus       176 ~~a~~~Lg~~~~~~g~---~~eAi~~~~~Al~l~P~~~-~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~  250 (524)
                      ..+.+++|+++.+..+   ..+|+..+++++..+|.+. + +++||.+|.++|++++|..+++                 
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~-----------------   97 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVD-----------------   97 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHH-----------------
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHH-----------------
Confidence            7899999999998754   5689999999999999875 4 8999999999999999999999                 


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHH
Q 009850          251 KAYERAQQMLKDLESEMMNKGGD  273 (524)
Q Consensus       251 ~~~~~al~~~p~~~~a~~~lg~~  273 (524)
                          +++++.|++..+....-.+
T Consensus        98 ----~~L~ieP~n~qA~~L~~~I  116 (124)
T d2pqrb1          98 ----TLFEHERNNKQVGALKSMV  116 (124)
T ss_dssp             ----HHHHHCTTCHHHHHHHHHH
T ss_pred             ----HHHccCCCcHHHHHHHHHH
Confidence                7777788777765554433

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.79  E-value=0.00018  Score=59.34  Aligned_cols=105  Identities=13%  Similarity=0.033  Sum_probs=84.1

Q ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCC
Q 009850           95 RAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQE  174 (524)
Q Consensus        95 ~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~  174 (524)
                      ++++|+.+|+++.+......    ...++.  ....++++|+.+|+++.+.                            +
T Consensus         8 d~~~A~~~~~kaa~~g~~~a----~~~l~~--~~~~~~~~a~~~~~~aa~~----------------------------g   53 (133)
T d1klxa_           8 DLKKAIQYYVKACELNEMFG----CLSLVS--NSQINKQKLFQYLSKACEL----------------------------N   53 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCTTH----HHHHHT--CTTSCHHHHHHHHHHHHHT----------------------------T
T ss_pred             CHHHHHHHHHHHHHCCChhh----hhhhcc--ccccCHHHHHHHHhhhhcc----------------------------c
Confidence            68899999999988765443    233443  2457889999999988754                            7


Q ss_pred             cHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHH----cCCHHHHHHHHHHh
Q 009850          175 ATRLLGNLGWALMQ----QNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMK----QGRIGEAKETLRRV  235 (524)
Q Consensus       175 ~~~a~~~Lg~~~~~----~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~----~G~~~eA~~~~~~a  235 (524)
                      ++.+.+.||.+|..    ..++++|+.+|+++.+.  .++. .++||.+|..    ..+..+|+.+|+++
T Consensus        54 ~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~A  121 (133)
T d1klxa_          54 SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKA  121 (133)
T ss_dssp             CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred             chhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHH
Confidence            88899999999986    56799999999999875  4566 8889999987    46899999999975

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=94.16  E-value=2.7  Score=40.49  Aligned_cols=27  Identities=4%  Similarity=-0.160  Sum_probs=17.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHhhc
Q 009850          264 ESEMMNKGGDRVEQSRLFDAFLGSSSI  290 (524)
Q Consensus       264 ~~a~~~lg~~~~~~g~~~eAi~~~~~a  290 (524)
                      ..-...++.+..+.|.++.||....++
T Consensus       413 ~~~~~~la~lA~~~g~~~~aI~a~~~~  439 (450)
T d1qsaa1         413 KTEQAQLARYAFNNQWWDLSVQATIAG  439 (450)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence            445566677777777777777665544

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=91.34  E-value=2.3  Score=40.92  Aligned_cols=244  Identities=11%  Similarity=-0.021  Sum_probs=122.9

Q ss_pred             HHhcCCCChHHH---HHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 009850           38 AIHKVPVGDTPY---VRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQA  114 (524)
Q Consensus        38 ~~~~~p~~~~~~---~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~  114 (524)
                      -+...|..+..-   ..--..+...+++..-+..|    ...|.+....+.++.++...|+.++|...+..+.......+
T Consensus        61 Fl~~~p~~P~~~~lr~~~l~~L~~~~~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p  136 (450)
T d1qsaa1          61 FVRANPTLPPARTLQSRFVNELARREDWRGLLAFS----PEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQP  136 (450)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHC----CSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCC
T ss_pred             HHHHCCCChhHHHHHHHHHHHHHhccCHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCc
Confidence            344455544332   22233456667776655433    34678888888899999999999999988888776544322


Q ss_pred             H-HH---------------HHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhH---HHH--HhcCC
Q 009850          115 Q-ES---------------LDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGK---KFQ--VSVEQ  173 (524)
Q Consensus       115 ~-~~---------------l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~---~~~--~~~~p  173 (524)
                      . +.               .+..........|++..|...+...    +....   ..........+   .+.  ....+
T Consensus       137 ~~c~~l~~~~~~~~~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l----~~~~~---~~~~a~~~l~~~p~~~~~~~~~~~  209 (450)
T d1qsaa1         137 NACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQM----PADYQ---TIASAIISLANNPNTVLTFARTTG  209 (450)
T ss_dssp             THHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTC----CGGGH---HHHHHHHHHHHCGGGHHHHHHHSC
T ss_pred             hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhhHHHHHhhC----ChhHH---HHHHHHHHHHhChHhHHHHHhcCC
Confidence            0 01               1111222233344444433332211    00000   00000000000   000  11122


Q ss_pred             CcH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHH----HHHHHHHcCCHHHHHHHHHHhcccccCCC---
Q 009850          174 EAT--RLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCN----LGICLMKQGRIGEAKETLRRVKPAVADGP---  243 (524)
Q Consensus       174 ~~~--~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~----Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~---  243 (524)
                      .+.  ......|..-....+.+.|...+.......+.... +..    ++..+...+..+.|...+........+..   
T Consensus       210 ~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  289 (450)
T d1qsaa1         210 ATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIE  289 (450)
T ss_dssp             CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHH
T ss_pred             CChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHH
Confidence            222  22233444444456777888877777665555544 222    22222334555666666655433222211   


Q ss_pred             ---------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhccc
Q 009850          244 ---------RGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQ  292 (524)
Q Consensus       244 ---------~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~  292 (524)
                               ++...+...+...-......+...|-+|..+...|+.++|...|..+-.
T Consensus       290 w~~~~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~  347 (450)
T d1qsaa1         290 RRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ  347 (450)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence                     2333444444333222234466778899999999999999999988765

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.70  E-value=1.6  Score=40.59  Aligned_cols=177  Identities=11%  Similarity=-0.025  Sum_probs=101.3

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcC
Q 009850           51 RAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCG  130 (524)
Q Consensus        51 ~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g  130 (524)
                      ..|..+...|.|+.|..+|...    .+    +..+..++.+++++..|.+.+.++     ++.  .+|..+...+....
T Consensus        19 ~i~~~c~~~~lye~A~~lY~~~----~d----~~rl~~~~v~l~~~~~avd~~~k~-----~~~--~~~k~~~~~l~~~~   83 (336)
T d1b89a_          19 QVGDRCYDEKMYDAAKLLYNNV----SN----FGRLASTLVHLGEYQAAVDGARKA-----NST--RTWKEVCFACVDGK   83 (336)
T ss_dssp             ----------CTTTHHHHHHHT----TC----HHHHHHHHHTTTCHHHHHHHHHHH-----TCH--HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHCCCHHHHHHHHHhC----CC----HHHHHHHHHhhccHHHHHHHHHHc-----CCH--HHHHHHHHHHHhCc
Confidence            4567778888888888888753    12    445567778888899888887655     222  45555555555555


Q ss_pred             ChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH
Q 009850          131 RLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNN  210 (524)
Q Consensus       131 ~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~  210 (524)
                      ...-|..     +...                         .-.++.-...+-..|...|.+++.+.+++.++...+.+.
T Consensus        84 e~~la~i-----~~~~-------------------------~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~  133 (336)
T d1b89a_          84 EFRLAQM-----CGLH-------------------------IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHM  133 (336)
T ss_dssp             CHHHHHH-----TTTT-------------------------TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCH
T ss_pred             HHHHHHH-----HHHH-------------------------hhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccch
Confidence            4433211     1110                         112344445567778889999999999999998888887


Q ss_pred             H-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 009850          211 K-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLG  286 (524)
Q Consensus       211 ~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~  286 (524)
                      . +..++.+|.+.+ .++=.+.++....     .-+...++...++    .    ..|-.+..+|...|.+++|+..
T Consensus       134 ~~~~~L~~lyak~~-~~kl~e~l~~~s~-----~y~~~k~~~~c~~----~----~l~~elv~Ly~~~~~~~~A~~~  196 (336)
T d1b89a_         134 GMFTELAILYSKFK-PQKMREHLELFWS-----RVNIPKVLRAAEQ----A----HLWAELVFLYDKYEEYDNAIIT  196 (336)
T ss_dssp             HHHHHHHHHHHTTC-HHHHHHHHHHHST-----TSCHHHHHHHHHT----T----TCHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhC-hHHHHHHHHhccc-----cCCHHHHHHHHHH----c----CChHHHHHHHHhcCCHHHHHHH
Confidence            7 778888887754 4444555543211     1122222222211    1    1234466678888888888775

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.49  E-value=6.5  Score=36.19  Aligned_cols=148  Identities=13%  Similarity=0.067  Sum_probs=97.9

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Q 009850           49 YVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKR  128 (524)
Q Consensus        49 ~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~  128 (524)
                      |-.+..++...+++..|...++++     ++.+.|..+...+....+..-|.-. ...+..+|+.     .......|..
T Consensus        43 ~~rl~~~~v~l~~~~~avd~~~k~-----~~~~~~k~~~~~l~~~~e~~la~i~-~~~~~~~~d~-----l~~~v~~ye~  111 (336)
T d1b89a_          43 FGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMC-GLHIVVHADE-----LEELINYYQD  111 (336)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHT-TTTTTTCHHH-----HHHHHHHHHH
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHc-----CCHHHHHHHHHHHHhCcHHHHHHHH-HHHhhcCHHH-----HHHHHHHHHH
Confidence            566777888888899988888776     6778999998888888776554221 1111122222     2345566788


Q ss_pred             cCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH-HhhCC
Q 009850          129 CGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRA-LSIAP  207 (524)
Q Consensus       129 ~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~A-l~l~P  207 (524)
                      .|.+++.+.+++.++..                          ++.+...+..++.+|.+.+ .++=.++++.. ...++
T Consensus       112 ~~~~e~Li~~Le~~~~~--------------------------~~~~~~~~~~L~~lyak~~-~~kl~e~l~~~s~~y~~  164 (336)
T d1b89a_         112 RGYFEELITMLEAALGL--------------------------ERAHMGMFTELAILYSKFK-PQKMREHLELFWSRVNI  164 (336)
T ss_dssp             TTCHHHHHHHHHHHTTS--------------------------TTCCHHHHHHHHHHHHTTC-HHHHHHHHHHHSTTSCH
T ss_pred             cCChHHHHHHHHHHHcC--------------------------CccchHHHHHHHHHHHHhC-hHHHHHHHHhccccCCH
Confidence            99999999999988765                          5677778888888777643 44444444432 11222


Q ss_pred             CcH-------H-HHHHHHHHHHcCCHHHHHHHHHH
Q 009850          208 DNN-------K-MCNLGICLMKQGRIGEAKETLRR  234 (524)
Q Consensus       208 ~~~-------~-~~~Lg~~~~~~G~~~eA~~~~~~  234 (524)
                      ...       . |-.+...|.+.|++++|+..+-.
T Consensus       165 ~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~  199 (336)
T d1b89a_         165 PKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN  199 (336)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHH
Confidence            110       1 55677788888888888777654