Citrus Sinensis ID: 009873

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520---
Protein Sequence
MKFPDTFHSHELLIAFSFFLLTLPLFSSSLPEGKGKEVPYYMTSDVKEVAGKSFDYIVVGGGTTGCPLAATLSDNFSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEYTSVAQSFISTDGVQNHRGRVLGGSSAINGGFYSRAREDFVKKAGWDEELVKKAYEWVESKVVFPPELTPWQSVVEFGLLEAGILPYNGYSLEHIEGTKIGGTAFDQCGKRHTSADLLEAGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSGIGPHDHLKDLNIPTIVDLQEVGEGMQDNPCIAKLVDTMPQKRLPEPPEVVAGVLPISSNASRMPIAAKLAFPISKGKLELDSTDPRQNPSIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSFLGIKPQEKLMSNSDELRKLCKNNVRTFYHYHGGCIVGSVVDKDYRVYGVKGLRVIDGSTFQESPGTNPMATVMMLGRYQGVKLVEERREICN
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccEEEEccccHHHHHHccccccccEEEEccccccccccccccHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHcccccccccccccccccccccEEEccccEEEHHHcccccccccccEEEEccEEEEEEEEcccccccccEEEEEEEEccccccccccccccccccccccccEEEEccccccHHHHHHcccccHHHHHHcccccEEcccccccccccccccccEEEccccccccccHHHHcccccccccccccccccccccccccEEEEEccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccEEcccccEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHcEccHHHccccEEEEEEEcccccHHHHHHHHcccccEEEEcccEcHHHcHHHHEHHHHHHHHHccccccccEEEEEcccccEEEEEcEccHHHHccccEEcEccccccccccccHHHHHHHHHHHHHHHcEcccccHHHHHHHHHHHHcccccEEEEccEcccEEEEcEEcEccccEEccHHHHHHHcccccEEEEEccEEEEEEEcccccccccEEEEEEEEEccccccEEEEEccccEEEEEEcEEEEEccccccHHHHHHHHcEccHHHHHHHcccccEccccccEEEEccEEEEEEEEcccccccccccccEEEEEEEEEcccccEEEEcccccccccEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHcHHHHHHccccccccccccHHHHHHHHHHHcEEccccEEcccEcccEccccEEcccEcEEEccHHHcccccccccHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
mkfpdtfhshELLIAFSFFLLtlplfssslpegkgkevpyymtsdvkevagkSFDYIVVgggttgcplaatlsDNFSVLLVErggspfgnplvtdkrffgfsllqtdeytSVAQSFistdgvqnhrgrvlggssainggfysRAREDFVKKAGWDEELVKKAYEWVEskvvfppeltpwqsVVEFGLleagilpyngyslehiegtkiggtafdqcgkrhtsadlleagnpkNLVVLLNATVNNIIfsnngkanesrahgirfiksdgssnhmheaylnkpgnsstwgDVILsagalgspqllllsgigphdhlkdlniptivdlqevgegmqdnpciaklvdtmpqkrlpeppevvagvlpissnasrmpiAAKLafpiskgkleldstdprqnpsikfnylaKEKDLHECVKMVQLLDKVtksqsvssflgikpqeklmSNSDELRKLCKNNVRTFyhyhggcivgsvvdkdyrvygvkglrvidgstfqespgtnpmATVMMLGRYQGVKLVEERREICN
Flexible Loop (DISEMBL)
MKFPDTFHSHELLIAFSFFLLTLPLFSSSLPEGKGKEVPYYMTSDVKEVAGKSFDYIVVGGGTTGCPLAATLSDNFSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEYTSVAQSFISTDGVQNHRGRVLggssainggfySRAREDFVKKAGWDEELVKKAYEWVESKVVFPPELTPWQSVVEFGLLEAGILPYNGYSLEHIEGTKIGGTAFDQCGKRHTSADLLEAGNPKNLVVLLNATVNNIIFSnngkanesrAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSGIGPHDHLKDLNIPTIVDLQEVGEGMQDNPCIAKLVDTMPQKRLPEPPEVVAGVLPISSNASRMPIAAKLAFPISKGkleldstdprqnpSIKFNYLAKEKDLHECVKMVQLLdkvtksqsvssflgikpqeklmsnSDELRKLCKNNVRTFYHYHGGCIVGSVVDKDYRVYGVKGLrvidgstfqespgtnpMATVMMLGRYQGVKLVEERREICN
Low Complexity Region (SEG)
MKFPDTFHSHELLIAfsfflltlplfssslpEGKGKEVPYYMTSDVKEVAGKSFDYIVVGGGTTGCPLAATLSDNFSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEYTSVAQSFISTDGVQNHRGRVLGGSSAINGGFYSRAREDFVKKAGWDEELVKKAYEWVESKVVFPPELTPWQSVVEFGLLEAGILPYNGYSLEHIEGTKIGGTAFDQCGKRHTSADLLEAGNPKnlvvllnatvnnIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSGIGPHDHLKDLNIPTIVDLQEVGEGMQDNPCIAKLVDTMPQKRLPEPPEVVAGVLPISSNASRMPIAAKLAFPISKGKLELDSTDPRQNPSIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSFLGIKPQEKLMSNSDELRKLCKNNVRTFYHYHGGCIVGSVVDKDYRVYGVKGLRVIDGSTFQESPGTNPMATVMMLGRYQGVKLVEERREICN
Disordered region (IsUnstruct)
******FHSHELLIAFSFFLLTLPLFSSSLPEGKGKEVPYYMTSDVKEVAGKSFDYIVVGGGTTGCPLAATLSDNFSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEYTSVAQSFISTDGVQNHRGRVLGGSSAINGGFYSRAREDFVKKAGWDEELVKKAYEWVESKVVFPPELTPWQSVVEFGLLEAGILPYNGYSLEHIEGTKIGGTAFDQCGKRHTSADLLEAGNPKNLVVLLNATVNNIIFSNN**********IRF*********************STWGDVILSAGALGSPQLLLLSGIGPHDHLKDLNIPTIVDLQEVGEGMQDNPCIAKLVD***************GVL************AKLAF*******************IKFNYLAKEKDLHECVKMVQLLDKVTK******FL**************LRKLCKNNVRTFYHYHGGCIVGSVVDKDYRVYGVKGLRVIDGSTF********MATVMMLGRYQGVKLV********
Disordered Region (DISOPRED)
********SHELLIAFSFFLLTLPLFSSSLPE******************GKSFDYIVVGGGTTGCPLAATLSDNFSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEYTSVAQSFISTDGVQNHRGRVLGGSSAINGGFYSRAREDFVKKAGWDEELVKKAYEWVESKVVFPPELTPWQSVVEFGLLEAGILPYNGYSLEHIEGTKIGGTAFDQCGKRHTSADLLEAGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSGIGPHDHLKDLNIPTIVDLQEVGEGMQDNPCIAKLVDTMPQKRLPEPPEVVAGVLPISSNASRMPIAAKLAFPISKGKLELDSTDPRQNPSIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSFLGIKPQEKLMSNSDELRKLCKNNVRTFYHYHGGCIVGSVVDKDYRVYGVKGLRVIDGSTFQESPGTNPMATVMMLGRYQGVKLVEERRE***
Disordered Region (DISEMBL)
MKFPDTFHSHELLIAFSFFLLTLPLFSSSLPEGKGKEVPYYMTSDVKEVAGKSFDYIVVGGGTTGCPLAATLSDNFSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEYTSVAQSFISTDGVQNHRGRVLGGSSAINGGFYSRAREDFVKKAGWDEELVKKAYEWVESKVVFPPELTPWQSVVEFGLLEAGILPYNGYSLEHIEGTKIGGTAFDQCGKRHTSADLLEAGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSGIGPHDHLKDLNIPTIVDLQEVGEGMQDNPCIAKLVDTMPQKRLPEPPEVVAGVLPISSNASRMPIAAKLAFPISKGKLELDSTDPRQNPSIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSFLGIKPQEKLMSNSDELRKLCKNNVRTFYHYHGGCIVGSVVDKDYRVYGVKGLRVIDGSTFQESPGTNPMATVMMLGRYQGVKLVEERREICN
Disordered Region (DISPRO)
MKFPDTFHSHELLIAFSFFLLTLPLFSSSLPEGKGKEVPYYMTSDVKEVAGKSFDYIVVGGGTTGCPLAATLSDNFSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEYTSVAQSFISTDGVQNHRGRVLGGSSAINGGFYSRAREDFVKKAGWDEELVKKAYEWVESKVVFPPELTPWQSVVEFGLLEAGILPYNGYSLEHIEGTKIGGTAFDQCGKRHTSADLLEAGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSGIGPHDHLKDLNIPTIVDLQEVGEGMQDNPCIAKLVDTMPQKRLPEPPEVVAGVLPISSNASRMPIAAKLAFPISKGKLELDSTDPRQNPSIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSFLGIKPQEKLMSNSDELRKLCKNNVRTFYHYHGGCIVGSVVDKDYRVYGVKGLRVIDGSTFQESPGTNPMATVMMLGRYQGVKLVEERR****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKFPDTFHSHELLIAFSFFLLTLPLFSSSLPEGKGKEVPYYMTSDVKEVAGKSFDYIVVGGGTTGCPLAATLSDNFSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEYTSVAQSFISTDGVQNHRGRVLGGSSAINGGFYSRAREDFVKKAGWDEELVKKAYEWVESKVVFPPELTPWQSVVEFGLLEAGILPYNGYSLEHIEGTKIGGTAFDQCGKRHTSADLLEAGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSGIGPHDHLKDLNIPTIVDLQEVGEGMQDNPCIAKLVDTMPQKRLPEPPEVVAGVLPISSNASRMPIAAKLAFPISKGKLELDSTDPRQNPSIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSFLGIKPQEKLMSNSDELRKLCKNNVRTFYHYHGGCIVGSVVDKDYRVYGVKGLRVIDGSTFQESPGTNPMATVMMLGRYQGVKLVEERREICN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	523	2.2.26 [Sep-21-2011]
Q9S746	594	Protein HOTHEAD OS=Arabid	no	no	0.856	0.754	0.428	1e-115
Q9SSM2	552	(R)-mandelonitrile lyase-	no	no	0.873	0.827	0.425	1e-107
P52707	573	(R)-mandelonitrile lyase	N/A	no	0.860	0.785	0.392	4e-98
P52706	563	(R)-mandelonitrile lyase	N/A	no	0.862	0.801	0.390	8e-98
Q945K2	563	(R)-mandelonitrile lyase	N/A	no	0.858	0.797	0.402	3e-97
O50048	576	(R)-mandelonitrile lyase	N/A	no	0.864	0.784	0.388	4e-96
O24243	559	(R)-mandelonitrile lyase	N/A	no	0.862	0.806	0.387	9e-95
O82784	574	(R)-mandelonitrile lyase	N/A	no	0.862	0.785	0.391	1e-93
Q47944	531	L-sorbose 1-dehydrogenase	yes	no	0.803	0.790	0.273	3e-33
A4XPI5	565	Choline dehydrogenase OS=	yes	no	0.833	0.771	0.265	4e-31

>sp|Q9S746|HTH_ARATH Protein HOTHEAD OS=Arabidopsis thaliana GN=HTH PE=1 SV=1

 Score =  414 bits (1064), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 233/544 (42%), Positives = 315/544 (57%), Gaps = 96/544 (17%)

Query: 53  SFDYIVVGGGTTGCPLAATLSDNFSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEYTSV 112
           S+DYIV+GGGT GCPLAATLS NFSVL++ERGG PF N  V+  R F   L      +S 
Sbjct: 62  SYDYIVIGGGTAGCPLAATLSQNFSVLVLERGGVPFTNANVSFLRNFHIGLADISA-SSA 120

Query: 113 AQSFISTDGVQNHRGRVLGGSSAINGGFYSRAREDFVKKAGWDEELVKKAYEWVESKVVF 172
           +Q+F+STDGV N R RVLGG S IN GFYSRA   FVK+AGWD +LVK++Y WVE ++V 
Sbjct: 121 SQAFVSTDGVYNARARVLGGGSCINAGFYSRADAAFVKRAGWDPKLVKESYPWVEREIVH 180

Query: 173 PPELTPWQSVVEFGLLEAGILPYNGYSLEHIEGTKIGGTAFDQCGKRHTSADLLEAGNPK 232
            P+LT WQ  +   LLE G+ P+NG++ +H+ GTKIGGT FD+ G+RHT+A+LL   NP+
Sbjct: 181 QPKLTLWQKALRDSLLEVGVRPFNGFTYDHVSGTKIGGTIFDRFGRRHTAAELLAYANPQ 240

Query: 233 NLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYL-NKPGNSSTWGDVI 291
            L VL+ ATV  I+F  +G     R  G+ F    G   + H+A L N+ G+     +VI
Sbjct: 241 KLRVLIYATVQKIVFDTSG--TRPRVTGVIFKDEKG---NQHQALLSNRKGS-----EVI 290

Query: 292 LSAGALGSPQLLLLSGIGPHDHLKDLNIPTIVDLQEVGEGMQDNPCIAKLV--------- 342
           LS+GA+GSPQ+L+LSGIGP   L+ L IP +++ + VG+GM DNP    LV         
Sbjct: 291 LSSGAIGSPQMLMLSGIGPKKELQRLKIPVVLENEHVGKGMADNPMNTILVPSKAPIEQS 350

Query: 343 -----------------------------------------DTMPQK-RLPEPPEVVAGV 360
                                                     T+P K R PE  +     
Sbjct: 351 LIQTVGITKMGVYVEASTGFGQSPESIHTHYGIMSNKNELFSTIPAKQRRPEATQAY--- 407

Query: 361 LPISSNASRMP-------IAAKLAFPISKGKLELDSTDPRQNPSIKFNYLAKEKDLHECV 413
             I+ N  ++        I  KLA+PIS+G L L +T+   NPS+ FNY     DL  CV
Sbjct: 408 --ITRNKYQLHEAFNGSFILEKLAYPISRGHLSLVNTNVDDNPSVTFNYFKHPVDLQRCV 465

Query: 414 KMVQLLDKVTKSQ-------------------SVSSFLGIKPQEKLMSNSDELRKLCKNN 454
           + ++L+ KV  S                    SV + + ++P++  ++++  + + CK+ 
Sbjct: 466 EAIRLVSKVVTSNRFLNYTQCDKQNVHKMLSLSVKANINLRPKQ--LNDTKSMAQFCKDT 523

Query: 455 VRTFYHYHGGCIVGSVVDKDYRVYGVKGLRVIDGSTFQESPGTNPMATVMMLGRYQGVKL 514
           V T +HYHGGC+VG VV  + +V GV  LRVIDGSTF ESPGTNP AT+MM+GRY GVK+
Sbjct: 524 VVTIWHYHGGCLVGKVVSPNRKVLGVDRLRVIDGSTFDESPGTNPQATMMMMGRYMGVKI 583

Query: 515 VEER 518
           + ER
Sbjct: 584 LRER 587

Probable FAD-dependent enzyme. Involved in regulating post-genital organ fusion. Required to limit cellular interactions between contacting epidermal cells during floral development.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SSM2|MDLL_ARATH (R)-mandelonitrile lyase-like OS=Arabidopsis thaliana GN=At1g73050 PE=2 SV=1

 Score =  387 bits (995), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 215/505 (42%), Positives = 289/505 (57%), Gaps = 48/505 (9%)

Query: 54  FDYIVVGGGTTGCPLAATLSDNFSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEYTSVA 113
           +DYI+VGGGT GCPLAATLS +F VLL+ERGG P+  P V     F  +L   + + S A
Sbjct: 54  YDYIIVGGGTAGCPLAATLSQSFRVLLLERGGVPYNRPNVMSHDGFLTTLTDVNNFDSPA 113

Query: 114 QSFISTDGVQNHRGRVLGGSSAINGGFYSRAREDFVKKAG--WDEELVKKAYEWVESKVV 171
           QSFIS +GV N RGRVLGGSSAIN GFYSRA + F + +G  WD   V ++YEWVE  +V
Sbjct: 114 QSFISEEGVPNARGRVLGGSSAINAGFYSRADKQFFENSGLVWDLSSVNQSYEWVERAIV 173

Query: 172 FPPELTPWQSVVEFGLLEAGILPYNGYSLEHIEGTKIGGTAFDQCGKRHTSADLLEAGNP 231
           F P+L  WQ+ +   LLE G+ P+NG++LEH  GTKIGG+ FD+ G+RH+SADLL     
Sbjct: 174 FRPQLRTWQTAIRDALLEVGVHPFNGFTLEHKVGTKIGGSTFDRTGRRHSSADLLRYARS 233

Query: 232 KNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVI 291
            N+ V + ATV  ++ +++   + S    I  +  D      H    ++       G+VI
Sbjct: 234 SNIRVAVYATVERVLLASSPSVSGSNVSAIGVVYRDQLGRFHHALIRDR-------GEVI 286

Query: 292 LSAGALGSPQLLLLSGIGPHDHLKDLNIPTIVDLQEVGEGMQDNPCIA-KLVDTMPQKR- 349
           LSAGALGSPQLL LSGIGP  +L    IP  +D   VG+ + DNP     +V  +P +  
Sbjct: 287 LSAGALGSPQLLFLSGIGPRSYLSTWGIPVALDQPHVGDFVYDNPRNGISIVPPVPMENS 346

Query: 350 -------------LPEPPEVVAGVLPISSNASRMP----------IAAKLAFPISKGKLE 386
                        L     V+    P+ S   R P          I  K+  P+S G L 
Sbjct: 347 LIQVVGVTEDGAFLEAASNVIPFASPLHSVFIRAPASPLYVPVTTIMEKILGPVSIGLLR 406

Query: 387 LDSTDPRQNPSIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSFLGIK----------- 435
           L STD R NP ++FNY +  +DL  CV   + + ++ +S+++  F+ I+           
Sbjct: 407 LASTDVRINPVVRFNYFSDPQDLERCVNGTRKIGEILRSRAMQDFM-IREWFGNRRFRFV 465

Query: 436 --PQEKLMSNSDELRKLCKNNVRTFYHYHGGCIVGSVVDKDYRVYGVKGLRVIDGSTFQE 493
             P     SN   +   C+  V T +HYHGG +VG VVD D +V GV  LR++DGSTF  
Sbjct: 466 GAPLPVDQSNDLVMADFCRRTVSTIWHYHGGAVVGKVVDSDLKVIGVNSLRLVDGSTFNI 525

Query: 494 SPGTNPMATVMMLGRYQGVKLVEER 518
           SPGTNP AT+MMLGRY G+K++ ER
Sbjct: 526 SPGTNPQATLMMLGRYMGLKMLRER 550

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: 0

>sp|P52707|MDL3_PRUSE (R)-mandelonitrile lyase 3 OS=Prunus serotina GN=MDL3 PE=2 SV=1

 Score =  358 bits (920), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 200/509 (39%), Positives = 293/509 (57%), Gaps = 59/509 (11%)

Query: 53  SFDYIVVGGGTTGCPLAATLSDNFSVLLVERGGSP--FGNPLVTDKRFFGFSLLQTDEYT 110
           S+DYI+VGGGT GCPLAATLS N+SVL++ERG  P  + N L++D   F ++L Q D+  
Sbjct: 53  SYDYIIVGGGTAGCPLAATLSANYSVLVLERGSLPTEYPNLLISDG--FVYNLQQEDDGK 110

Query: 111 SVAQSFISTDGVQNHRGRVLGGSSAINGGFYSRAREDFVKKAG--WDEELVKKAYEWVES 168
           +  + F+S DG+ N RGRVLGG+S IN G Y RA   F  + G  WD +LV + YEWVE 
Sbjct: 111 TPVERFVSEDGIDNVRGRVLGGTSMINAGVYVRANTSFFNQTGIEWDMDLVNQTYEWVED 170

Query: 169 KVVFPPELTPWQSVVEFGLLEAGILPYNGYSLEHIEGTKIGGTAFDQCGKRHTSADLLEA 228
            +VF P+   WQ+V+    LEAGILP NG+S++H+ GT++ G+ FD  G RH S +LL  
Sbjct: 171 TIVFEPDSQTWQTVIGTAYLEAGILPNNGFSVDHLAGTRLTGSTFDNNGTRHASDELLNK 230

Query: 229 GNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWG 288
           G+P NL V + A V  IIFS+N       A G+ +  S+G++   H+A++         G
Sbjct: 231 GDPNNLRVAVQAAVEKIIFSSNTSG--VTAIGVIYTDSNGTT---HQAFVRGE------G 279

Query: 289 DVILSAGALGSPQLLLLSGIGPHDHLKDLNIPTIVDLQEVGEGMQDNPCIAKLVDTMPQK 348
           +VILSAG +GSPQLLLLSG+GP  +L  LNI  +     VG+ + DNP     ++ +P  
Sbjct: 280 EVILSAGPIGSPQLLLLSGVGPESYLTSLNISVVASHPYVGQYIYDNP--RNFINILPPN 337

Query: 349 RLPEPPEVVAGV-----------LPISS--------------NASRMPIAAKLAFPISKG 383
            +      V G+           LP  +              N +   I  K+  P+S G
Sbjct: 338 PIEASTVTVLGITSDFYQCSISSLPFDTPPFSFFPTTSYPLPNQTFAHIVNKVPGPLSHG 397

Query: 384 KLELD-STDPRQNPSIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSF----------- 431
            + L+ S+D R  P++KFNY +   DL  CV  ++ L +V  + ++  +           
Sbjct: 398 TVTLNSSSDVRVGPNVKFNYYSNLTDLSHCVSGMKKLGEVLSTDALEPYKVEDLPGIDGF 457

Query: 432 --LGIKPQEKLMSNSDELRKLCKNNVRTFYHYHGGCIVGSVVDKDYRVYGVKGLRVIDGS 489
             LGI P  +  ++       C+ +V +++HYHGGC+VG V+D  +RV G+  LRV+DGS
Sbjct: 458 NILGI-PLPENQTDDAAFETFCRESVASYWHYHGGCLVGKVLDDGFRVTGINALRVVDGS 516

Query: 490 TFQESPGTNPMATVMMLGRYQGVKLVEER 518
           TF  +P ++P    +MLGRY G+++++ER
Sbjct: 517 TFPSTPASHPQGFYLMLGRYMGIQILQER 545

Involved in cyanogenesis, the release of HCN from injured tissues. Catalyzes the stereospecific addition of HCN to a variety of aldehydes in vitro. It is a major seed constituent, and could have the additional role of a storage form for reduced nitrogen.

Prunus serotina (taxid: 23207)

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: 0

>sp|P52706|MDL1_PRUSE (R)-mandelonitrile lyase 1 OS=Prunus serotina GN=MDL1 PE=1 SV=1

 Score =  358 bits (918), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 198/507 (39%), Positives = 293/507 (57%), Gaps = 56/507 (11%)

Query: 53  SFDYIVVGGGTTGCPLAATLSDNFSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEYTSV 112
           S+DY++VGGGT+GCPLAATLS+ + VL++ERG  P   P V     F ++L Q D+  + 
Sbjct: 53  SYDYVIVGGGTSGCPLAATLSEKYKVLVLERGSLPTAYPNVLTADGFVYNLQQEDDGKTP 112

Query: 113 AQSFISTDGVQNHRGRVLGGSSAINGGFYSRAREDFVKKAG--WDEELVKKAYEWVESKV 170
            + F+S DG+ N RGRVLGG+S IN G Y+RA       +G  WD +LV K YEWVE  +
Sbjct: 113 VERFVSEDGIDNVRGRVLGGTSMINAGVYARANTSIYSASGVDWDMDLVNKTYEWVEDTI 172

Query: 171 VFPPELTPWQSVVEFGLLEAGILPYNGYSLEHIEGTKIGGTAFDQCGKRHTSADLLEAGN 230
           VF P   PWQSV     LEAG+ P +G+SL+H  GT+I G+ FD  G RH + +LL  GN
Sbjct: 173 VFKPNYQPWQSVTGTAFLEAGVDPNHGFSLDHEAGTRITGSTFDNKGTRHAADELLNKGN 232

Query: 231 PKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDV 290
             NL V ++A+V  IIFSN   A    A G+ +  S+G+    H A++       + G+V
Sbjct: 233 SNNLRVGVHASVEKIIFSN---APGLTATGVIYRDSNGTP---HRAFVR------SKGEV 280

Query: 291 ILSAGALGSPQLLLLSGIGPHDHLKDLNIPTIVDLQEVGEGMQDNPCIAKLVDTMPQKRL 350
           I+SAG +G+PQLLLLSG+GP  +L  LNIP ++    VG+ + DNP     ++ +P   +
Sbjct: 281 IVSAGTIGTPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQFLHDNP--RNFINILPPNPI 338

Query: 351 PEPPEVVAGV-----------LPISS--------------NASRMPIAAKLAFPISKGKL 385
                 V G+           LP ++              N++    A+K+A P+S G L
Sbjct: 339 EPTIVTVLGISNDFYQCSFSSLPFTTPPFSFFPSTSYPLPNSTFAHFASKVAGPLSYGSL 398

Query: 386 EL-DSTDPRQNPSIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSF------------- 431
            L  S++ R +P++KFNY +   DL  CV  ++ + ++  + ++  +             
Sbjct: 399 TLKSSSNVRVSPNVKFNYYSNPTDLSHCVSGMKKIGELLSTDALKPYKVEDLPGIEGFNI 458

Query: 432 LGIKPQEKLMSNSDELRKLCKNNVRTFYHYHGGCIVGSVVDKDYRVYGVKGLRVIDGSTF 491
           LGI P  K  ++       C+ +V +++HYHGGC+VG V+D D+RV G+  LRV+DGSTF
Sbjct: 459 LGI-PLPKDQTDDAAFETFCRESVASYWHYHGGCLVGKVLDGDFRVTGIDALRVVDGSTF 517

Query: 492 QESPGTNPMATVMMLGRYQGVKLVEER 518
             +P ++P    +MLGRY G+K+++ER
Sbjct: 518 PYTPASHPQGFYLMLGRYVGIKILQER 544

Involved in cyanogenesis, the release of HCN from injured tissues. Catalyzes the stereospecific addition of HCN to a variety of aldehydes in vitro. It is a major seed constituent, and could have the additional role of a storage form for reduced nitrogen.

Prunus serotina (taxid: 23207)

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: 0

>sp|Q945K2|MDL2_PRUDU (R)-mandelonitrile lyase 2 OS=Prunus dulcis GN=MDL2 PE=1 SV=1

 Score =  356 bits (913), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 205/509 (40%), Positives = 294/509 (57%), Gaps = 60/509 (11%)

Query: 53  SFDYIVVGGGTTGCPLAATLSDNFSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEYTSV 112
           S+DY++VGGGT+GCPLAATLS+ + VL++ERG  P   P V     F ++L Q D+  + 
Sbjct: 53  SYDYVIVGGGTSGCPLAATLSEKYKVLVLERGSLPTAYPNVLTADGFVYNLQQEDDGKTP 112

Query: 113 AQSFISTDGVQNHRGRVLGGSSAINGGFYSRAREDFVKKAG--WDEELVKKAYEWVESKV 170
            + F+S DG+ N RGRVLGG+S IN G Y+RA       +G  WD +LV + YEWVE  +
Sbjct: 113 VERFVSEDGIDNVRGRVLGGTSIINAGVYARANTSIYSASGVDWDMDLVNQTYEWVEDTI 172

Query: 171 VFPPELTPWQSVVEFGLLEAGILPYNGYSLEHIEGTKIGGTAFDQCGKRHTSADLLEAGN 230
           V+ P    WQSV +   LEAG+ P +G+SL+H EGT+I G+ FD  G RH + +LL  GN
Sbjct: 173 VYKPNSQSWQSVTKTAFLEAGVHPNHGFSLDHEEGTRITGSTFDNKGTRHAADELLNKGN 232

Query: 231 PKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDV 290
             NL V ++A+V  IIFSN   A    A G+ +  S+G+    H+A++         G+V
Sbjct: 233 SNNLRVGVHASVEKIIFSN---APGLTATGVIYRDSNGTP---HQAFVRSK------GEV 280

Query: 291 ILSAGALGSPQLLLLSGIGPHDHLKDLNIPTIVDLQEVGEGMQDNPCIAKLVDTMPQKRL 350
           I+SAG +G+PQLLLLSG+GP  +L  LNIP ++    VG+ + DNP     ++ +P    
Sbjct: 281 IVSAGTIGTPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQFLHDNP--RNFINILPPN-- 336

Query: 351 PEPPEVVA-----------------------GVLPISS----NASRMPIAAKLAFPISKG 383
           P  P +V                        G  P +S    N++    A+K+A P+S G
Sbjct: 337 PIEPTIVTVLGISNDFYQCSFSSLPFTTPPFGFFPSASYPLPNSTFAHFASKVAGPLSYG 396

Query: 384 KLEL-DSTDPRQNPSIKFNYLAKEKDLHECV----KMVQLLD-------KVTKSQSVSSF 431
            L L  S++ R +P++KFNY +   DL  CV    K+ +LL        KV     V  F
Sbjct: 397 SLTLKSSSNVRVSPNVKFNYYSNLTDLSHCVSGMKKIGELLSTDALKPYKVEDLPGVEGF 456

Query: 432 --LGIKPQEKLMSNSDELRKLCKNNVRTFYHYHGGCIVGSVVDKDYRVYGVKGLRVIDGS 489
             LGI P  K  ++       C+ +V +++HYHGGC+VG V+D D+RV G+  LRV+DGS
Sbjct: 457 NILGI-PLPKDQTDDAAFETFCRESVASYWHYHGGCLVGKVLDGDFRVTGINALRVVDGS 515

Query: 490 TFQESPGTNPMATVMMLGRYQGVKLVEER 518
           TF  +P ++P    +MLGRY G+K+++ER
Sbjct: 516 TFPYTPASHPQGFYLMLGRYVGIKILQER 544

Involved in cyanogenesis, the release of HCN from injured tissues. Catalyzes the stereospecific addition of HCN to a variety of aldehydes in vitro. Has no oxidase activity. The redox properties of the FAD cofactor appear to be unimportant for catalysis.

Prunus dulcis (taxid: 3755)

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: 0

>sp|O50048|MDL2_PRUSE (R)-mandelonitrile lyase 2 OS=Prunus serotina GN=MDL2 PE=2 SV=1

 Score =  352 bits (903), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 197/507 (38%), Positives = 285/507 (56%), Gaps = 55/507 (10%)

Query: 53  SFDYIVVGGGTTGCPLAATLSDNFSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEYTSV 112
           ++DYI+VGGGT GCPLAATLS N+SVL++ERG  P   P +     F ++L Q D+  + 
Sbjct: 54  TYDYIIVGGGTAGCPLAATLSANYSVLVLERGTLPTEYPNLLTSDGFIYNLQQEDDGQTP 113

Query: 113 AQSFISTDGVQNHRGRVLGGSSAINGGFYSRAREDFVKKAG--WDEELVKKAYEWVESKV 170
            + F+S DG+ N RGRVLGG+S IN G Y RA   F  + G  WD +LV K Y+WVE  +
Sbjct: 114 VERFVSGDGIDNVRGRVLGGTSMINAGVYVRANTSFFNQTGIEWDMDLVNKTYDWVEDTI 173

Query: 171 VFPPELTPWQSVVEFGLLEAGILPYNGYSLEHIEGTKIGGTAFDQCGKRHTSADLLEAGN 230
           VF P+   WQ++     LE GILP NG+SL+H+EGT++ G+ FD  G RH S +LL  G+
Sbjct: 174 VFKPDFQFWQNLTGTAFLEVGILPDNGFSLDHLEGTRLTGSTFDNNGTRHASDELLNKGD 233

Query: 231 PKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDV 290
           P NL V ++A V  IIFS++       A G+ +  S+G++   H+A++         G+V
Sbjct: 234 PNNLRVAVHAAVEKIIFSSDSSG--VTAIGVIYTDSNGTT---HQAFVRGD------GEV 282

Query: 291 ILSAGALGSPQLLLLSGIGPHDHLKDLNIPTIVDLQEVGEGMQDNPCIAKLVDTMPQKRL 350
           ILSAG +GSPQLLLLSG+G   +L  LNI  +     VG+ + DNP     ++ +P   +
Sbjct: 283 ILSAGPIGSPQLLLLSGVGLESYLTSLNISVVASHPYVGQYIYDNP--RNFINILPPNPI 340

Query: 351 PEPPEVVAGV-----------LPISS--------------NASRMPIAAKLAFPISKGKL 385
                 V G+           LP S+              N +   I  K+  P+S G +
Sbjct: 341 EASTVTVLGITSDFYQCSISSLPFSTAPFGFFPNPTYPLPNTTFAHIVNKVPGPLSHGTV 400

Query: 386 ELDST-DPRQNPSIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSF------------- 431
            L ST D R  P++ FNY +   DL  CV  ++ + +   S ++  +             
Sbjct: 401 LLQSTSDVRVAPNVTFNYYSNTTDLAHCVSGMKKIGEFLSSDALKPYKVEDLPGIEGFDI 460

Query: 432 LGIKPQEKLMSNSDELRKLCKNNVRTFYHYHGGCIVGSVVDKDYRVYGVKGLRVIDGSTF 491
           LGI P  +  ++       C+  V +++HYHGGC+VG V+D D+RV G+  LRV+DGSTF
Sbjct: 461 LGI-PLPENQTDDAAFETFCREAVASYWHYHGGCLVGEVLDDDFRVTGINALRVVDGSTF 519

Query: 492 QESPGTNPMATVMMLGRYQGVKLVEER 518
             +P ++P    +MLGRY G K+++ER
Sbjct: 520 PSTPASHPQGFYLMLGRYMGTKILQER 546

Involved in cyanogenesis, the release of HCN from injured tissues. Catalyzes the stereospecific addition of HCN to a variety of aldehydes in vitro. It is a major seed constituent, and could have the additional role of a storage form for reduced nitrogen.

Prunus serotina (taxid: 23207)

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: 0

>sp|O24243|MDL1_PRUDU (R)-mandelonitrile lyase 1 OS=Prunus dulcis GN=MDL1 PE=2 SV=1

 Score =  348 bits (892), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 197/508 (38%), Positives = 295/508 (58%), Gaps = 57/508 (11%)

Query: 53  SFDYIVVGGGTTGCPLAATLSDNFSVLLVERG--GSPFGNPLVTDKRFFGFSLLQTDEYT 110
           S+DYIV+GGGT+GCPLAATLS+ + VLL+ERG   + + N L  D   F ++L Q D+  
Sbjct: 53  SYDYIVIGGGTSGCPLAATLSEKYKVLLLERGTIATEYPNTLTADG--FAYNLQQQDDGK 110

Query: 111 SVAQSFISTDGVQNHRGRVLGGSSAINGGFYSRAREDFVKKAG--WDEELVKKAYEWVES 168
           +  + F+S DG+ N R R+LGG++ IN G Y+RA   F  + G  WD +LV K YEWVE 
Sbjct: 111 TPVERFVSEDGIDNVRARILGGTTIINAGVYARANISFYSQTGIEWDLDLVNKTYEWVED 170

Query: 169 KVVFPPELTPWQSVVEFGLLEAGILPYNGYSLEHIEGTKIGGTAFDQCGKRHTSADLLEA 228
            +V  P    WQSV+  G LEAGILP NG+SL+H  GT++ G+ FD  G RH + +LL  
Sbjct: 171 AIVVKPNNQSWQSVIGEGFLEAGILPDNGFSLDHEAGTRLTGSTFDNNGTRHAADELLNK 230

Query: 229 GNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWG 288
           G+P NL+V + A+V  I+FS+N   +   A G+ +  SDG+S   H+A++   GN    G
Sbjct: 231 GDPNNLLVAVQASVEKILFSSN--TSNLSAIGVIYTDSDGNS---HQAFVR--GN----G 279

Query: 289 DVILSAGALGSPQLLLLSGIGPHDHLKDLNIPTIVDLQEVGEGMQDNPCIAKLVDTMPQK 348
           +VI+SAG +G+PQLLLLSG+GP  +L  LNI  +     VG+ + +NP     ++  P  
Sbjct: 280 EVIVSAGTIGTPQLLLLSGVGPESYLSSLNITVVQPNPYVGQFLYNNP--RNFINNFPPN 337

Query: 349 RLPEPPEVVAGV-----------LPISS--------------NASRMPIAAKLAFPISKG 383
            +      V G+           LP S+              N++   I +++  P+S G
Sbjct: 338 PIEASVVTVLGIRSDYYQVSLSSLPFSTPPFSLFPTTSYPLPNSTFAHIVSQVPGPLSHG 397

Query: 384 KLELD-STDPRQNPSIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSF-----LGIK-- 435
            + L+ S+D R  P+IKFNY +   DL  CV  ++ L  + +++++  +     LGI   
Sbjct: 398 SVTLNSSSDVRIAPNIKFNYYSNSTDLANCVSGMKKLGDLLRTKALEPYKARDVLGIDGF 457

Query: 436 -----PQEKLMSNSDELRKLCKNNVRTFYHYHGGCIVGSVVDKDYRVYGVKGLRVIDGST 490
                P  +  ++       C +NV +++HYHGG +VG V+D  +RV G+K LRV+D ST
Sbjct: 458 NYLGVPLPENQTDDASFETFCLDNVASYWHYHGGSLVGKVLDDSFRVMGIKALRVVDAST 517

Query: 491 FQESPGTNPMATVMMLGRYQGVKLVEER 518
           F   P ++P    +MLGRY G+++++ER
Sbjct: 518 FPYEPNSHPQGFYLMLGRYVGLQILQER 545

Involved in cyanogenesis, the release of HCN from injured tissues. Catalyzes the stereospecific addition of HCN to a variety of aldehydes in vitro. It is a major seed constituent, and could have the additional role of a storage form for reduced nitrogen.

Prunus dulcis (taxid: 3755)

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: 0

>sp|O82784|MDL4_PRUSE (R)-mandelonitrile lyase 4 OS=Prunus serotina GN=MDL4 PE=2 SV=1

 Score =  343 bits (881), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 199/508 (39%), Positives = 283/508 (55%), Gaps = 57/508 (11%)

Query: 53  SFDYIVVGGGTTGCPLAATLSDNFSVLLVERG--GSPFGNPLVTDKRFFGFSLLQTDEYT 110
           S+DYI+VGGGT+GCPLAATLS N+SVL++ERG   + + N L  D   F ++L Q D+  
Sbjct: 54  SYDYIIVGGGTSGCPLAATLSANYSVLVLERGTIATEYPNTLTVDG--FAYNLQQQDDGK 111

Query: 111 SVAQSFISTDGVQNHRGRVLGGSSAINGGFYSRAREDFVKKAG--WDEELVKKAYEWVES 168
           +  + F+S DG+ N R R+LGG++ IN G Y+RA E F   +G  WD +LV +AYEWVE 
Sbjct: 112 TPVERFVSEDGIDNVRSRILGGTTIINAGVYARANESFYNNSGVEWDLDLVNEAYEWVED 171

Query: 169 KVVFPPELTPWQSVVEFGLLEAGILPYNGYSLEHIEGTKIGGTAFDQCGKRHTSADLLEA 228
            +V+ P    WQS+     LEAG+ P NG+ L H EGT++ G+ FD  G RH S +LL  
Sbjct: 172 AIVYKPSNQSWQSITGTAFLEAGVHPDNGFGLVHEEGTRLTGSTFDNSGTRHASDELLNK 231

Query: 229 GNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWG 288
           G+P NL V + A V  IIFS   +++   A G+ +  S+G+S   H A +      S  G
Sbjct: 232 GDPDNLKVAVEAAVQKIIFST--ESSGLTAVGVVYTDSNGTS---HRALV------SGKG 280

Query: 289 DVILSAGALGSPQLLLLSGIGPHDHLKDLNIPTIVDLQEVGEGMQDNPCIAKLVDTMPQK 348
           +VILSAG LG+PQLLLLSG+GP  +L  LNI  +     VG+ + DNP     ++ +P  
Sbjct: 281 EVILSAGTLGTPQLLLLSGVGPESYLTSLNISVVASHPYVGQYVNDNP--RNFINILPPN 338

Query: 349 RLPEPPEVVAGV-----------LPISS--------------NASRMPIAAKLAFPISKG 383
            +      V G+           LP  +              N +   I +K+  P+S G
Sbjct: 339 PIEPSTVTVLGITSDFYQCSLSSLPFDTPPFSLFPTTSYPLPNQTFAHIVSKVPGPLSAG 398

Query: 384 KLELD-STDPRQNPSIKFNYLAKEKDLHECVKMVQ-----LLDKVTKSQSVSSFLGI--- 434
            L L  S++    P++KFNY +   DL  CV  ++     L     K   V    GI   
Sbjct: 399 SLTLQSSSNVSVAPNVKFNYCSDPVDLTHCVSGMKKIGVFLSTDALKPYKVDDLPGIDGF 458

Query: 435 ----KPQEKLMSNSDELRKLCKNNVRTFYHYHGGCIVGSVVDKDYRVYGVKGLRVIDGST 490
                P  +  ++     K C++ V +++HYHGG IVG V+D ++RV G+  LRV+DGST
Sbjct: 459 NILGTPLPENQTDDAAFEKFCRDTVASYWHYHGGAIVGKVIDGNFRVTGINALRVVDGST 518

Query: 491 FQESPGTNPMATVMMLGRYQGVKLVEER 518
           F  +P ++P    +MLGRY G K+V+ER
Sbjct: 519 FPATPASHPQGFYLMLGRYVGTKIVQER 546

Involved in cyanogenesis, the release of HCN from injured tissues. Catalyzes the stereospecific addition of HCN to a variety of aldehydes in vitro. It is a major seed constituent, and could have the additional role of a storage form for reduced nitrogen.

Prunus serotina (taxid: 23207)

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: 0

>sp|Q47944|SDH_GLUOY L-sorbose 1-dehydrogenase OS=Gluconobacter oxydans PE=3 SV=1

 Score =  143 bits (361), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 150/548 (27%), Positives = 234/548 (42%), Gaps = 128/548 (23%)

Query: 54  FDYIVVGGGTTGCPLAATLSDNFSV--LLVERGGSPFGNPLVTDKRFFGFSLLQTDEYT- 110
           FDYIVVGGG+ GC LAA LS+N SV   L+E G     +PL+      GF+ + T  +T 
Sbjct: 5   FDYIVVGGGSAGCVLAARLSENPSVRVCLIEAGRRDT-HPLI--HMPVGFAKMTTGPHTW 61

Query: 111 ---SVAQSFISTDGVQNHRGRVLGGSSAINGGFYSRAR-EDFVKKA-----GWDEELVKK 161
              +  Q   +   +   +GR+LGG S+IN   ++R    DF + A     GW    V+K
Sbjct: 62  DLLTEPQKHANNRQIPYVQGRILGGGSSINAEVFTRGHPSDFDRWAAEGADGWSFRDVQK 121

Query: 162 AYEWVESKVVF--------------------PPELTPWQSVVEFGLLEAGILPYN-GYSL 200
            +   E   VF                    P      QS  E GL      PYN  ++ 
Sbjct: 122 YFIRSEGNAVFSGTWHGTNGPLGVSNLAEPNPTSRAFVQSCQEMGL------PYNPDFNG 175

Query: 201 EHIEGTKIGGTAFDQCGKRHTSADLLE-AGNPKNLVVLLNATVNNIIFSNNGKANESRAH 259
              EG  I         +  T+   L  A   KNL V+  A V  I+F      N +RA 
Sbjct: 176 ASQEGAGIYQMTIRNNRRCSTAVGYLRPALGRKNLTVVTRALVLKIVF------NGTRAT 229

Query: 260 GIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSGIGPHDHLKDLNI 319
           G+++I ++G+ N    +            +++++AGA+G+P+L++LSG+GP  HL++  I
Sbjct: 230 GVQYI-ANGTLNTAEASQ-----------EIVVTAGAIGTPKLMMLSGVGPAAHLRENGI 277

Query: 320 PTIVDLQEVGEGMQDN-------------------------------------PCIAKLV 342
           P + DL  VGE +QD+                                     P  + +V
Sbjct: 278 PVVQDLPGVGENLQDHFGVDIVAELKTDESFDKYRKLHWMLWAGLEYTMFRSGPVASNVV 337

Query: 343 D------TMPQKRLPE-------PPEVVAGVLPISSNASRMPIAAKLAFPISKGKLELDS 389
           +      + P   +P+            AGV  +   AS + + + +  P S+G + L S
Sbjct: 338 EGGAFWYSDPSSGVPDLQFHFLAEAGAEAGVTSVPKGASGITLNSYVLRPKSRGTVRLRS 397

Query: 390 TDPRQNPSIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSS-------FLGIKPQEKLMS 442
            DPR NP +  N+L    DL    + V+L  ++    S+         F G +P  ++  
Sbjct: 398 ADPRVNPMVDPNFLGDPADLETSAEGVRLSYEMFSQPSLEKHIRKTCFFSGKQPTMQM-- 455

Query: 443 NSDELRKLCKNNVRTFYHYHGGCIVG----SVVDKDYRVYGVKGLRVIDGSTFQESPGTN 498
                R   + + RT YH    C +G    SVVD   +V+G++G+R+ D S      G+N
Sbjct: 456 ----YRDYAREHGRTSYHPTCTCKMGRDDMSVVDPRLKVHGLEGIRICDSSVMPSLLGSN 511

Query: 499 PMATVMML 506
             A  +M+
Sbjct: 512 TNAATIMI 519

Gluconobacter oxydans (taxid: 442)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 3

EC: 2

>sp|A4XPI5|BETA_PSEMY Choline dehydrogenase OS=Pseudomonas mendocina (strain ymp) GN=betA PE=3 SV=1

 Score =  136 bits (342), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 143/538 (26%), Positives = 236/538 (43%), Gaps = 102/538 (18%)

Query: 54  FDYIVVGGGTTGCPLAATLSDN--FSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEYTS 111
           FDYI++G G+ G  LA  L+++   SVLL+E GG  +     T         LQ   Y  
Sbjct: 5   FDYIIIGAGSAGNVLATRLTEDADVSVLLLEAGGPDYRLDFRTQMPAALAFPLQGRRYNW 64

Query: 112 VAQS----FISTDGVQNHRGRVLGGSSAINGGFYSRAR----EDFVKKAG---WDEELVK 160
             ++     ++   ++  RG+ LGGSS ING  Y R      +++ K  G   W      
Sbjct: 65  AYETDPEPHMNNRRMECGRGKGLGGSSLINGMCYIRGNALDFDNWAKAKGLEDWTYHDCL 124

Query: 161 KAYEWVESKVVFPPEL----------TP-------WQSVVEFGLLEAGILPYNGYSLEHI 203
             +   ES+ + P +           TP       + ++VE G+ +AG    +  +    
Sbjct: 125 PYFRKAESRDIGPNDYHGGDGPVSVTTPKAGNNPLFHAMVEAGV-QAGYPRTDDLNGYQQ 183

Query: 204 EGTKIGGTAFDQCGKRHTSAD--LLEAGNPKNLVVLLNATVNNIIFSNNGKANESRAHGI 261
           EG           G+R ++A   L +A    NL ++ +AT + I+F  +GK    RA G+
Sbjct: 184 EGFGPMDRTVTPQGRRASTARGYLDQARERPNLTIVTHATTDRILF--DGK----RASGV 237

Query: 262 RFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSGIGPHDHLKDLNIPT 321
            ++   G++N   EA   +        +V+L AGA+ SPQ+L  SG+GP   L++L+I  
Sbjct: 238 SYLI--GNANDATEARARR--------EVLLCAGAIASPQILQRSGVGPAALLRELDIAL 287

Query: 322 IVDLQEVGEGMQDN-------PCIAKLVDTMPQKRLPEP--------------------- 353
           + +L  VG+ +QD+        C   +      K L +P                     
Sbjct: 288 VHELPGVGQNLQDHLEMYLQYACTQPVSLYPALKLLNQPGIGAQWLFTGNGIGASNQFEA 347

Query: 354 ------------PEVVAGVLPISSNASRMPIAAKLAFPI--------SKGKLELDSTDPR 393
                       P +    LP++ N +      +  F          S+G+++L S DPR
Sbjct: 348 GGFIRTRPEFAWPNIQFHFLPVAINYNGSNAVNEHGFQAHVGSMRSPSRGRIQLKSKDPR 407

Query: 394 QNPSIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSFLGIKPQEKLMSNSD-ELRKLCK 452
           Q+PSI FNY++ E+D  E    +++  ++    ++ S+ G +    +   SD EL    +
Sbjct: 408 QHPSILFNYMSHEQDWQEFRDAIRITREIMAQPALDSYRGREISPGIDCQSDAELDAFIR 467

Query: 453 NNVRTFYHYHGGCIVG----SVVDKDYRVYGVKGLRVIDGSTFQESPGTNPMATVMML 506
            +  T +H    C +G    +VVD   RV+GV+GLRV+D S   E    N  AT +M+
Sbjct: 468 EHAETAFHPSCSCKMGEDDMAVVDGQGRVHGVQGLRVVDASIMPEIITGNLNATTIMM 525

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Pseudomonas mendocina (strain ymp) (taxid: 399739)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	523
255562886	537	glucose-methanol-choline (gmc) oxidoredu	0.982	0.957	0.688	0.0
224109004	489	predicted protein [Populus trichocarpa]	0.913	0.977	0.706	0.0
356502545	559	PREDICTED: protein HOTHEAD-like [Glycine	0.986	0.923	0.637	0.0
357487063	543	(R)-mandelonitrile lyase [Medicago trunc	0.990	0.953	0.638	0.0
356498308	502	PREDICTED: protein HOTHEAD-like [Glycine	0.913	0.952	0.667	0.0
224101361	502	predicted protein [Populus trichocarpa]	0.908	0.946	0.665	0.0
224109006	538	predicted protein [Populus trichocarpa]	0.986	0.959	0.633	0.0
297844322	521	glucose-methanol-choline oxidoreductase	0.942	0.946	0.606	0.0
15223677	501	glucose-methanol-choline oxidoreductase-	0.902	0.942	0.625	0.0
18394079	503	glucose-methanol-choline (GMC) oxidoredu	0.931	0.968	0.604	0.0

>gi|255562886|ref|XP_002522448.1| glucose-methanol-choline (gmc) oxidoreductase, putative [Ricinus communis] gi|223538333|gb|EEF39940.1| glucose-methanol-choline (gmc) oxidoreductase, putative [Ricinus communis]

 Score =  748 bits (1931), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/529 (68%), Positives = 431/529 (81%), Gaps = 15/529 (2%)

Query: 1   MKFPDTFHSHELLIAFSFFLLTLPLFSSSLPEGKGKEVPYYMTSDVKEVAGKSFDYIVVG 60
           M +P   H H LL AF F L+ L   S S P  +GK +PY MTSDV EV+GKSFDYIVVG
Sbjct: 1   MDYPVIIHGHYLLAAFFFLLVNL---SKSSPLLQGKSIPY-MTSDVNEVSGKSFDYIVVG 56

Query: 61  GGTTGCPLAATLSDNFSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEYTSVAQSFISTD 120
           GGT GCPLAATLS+ FSVLLVERGGSP+GNPLV +K ++GF+LLQTDE++SVA+SFIS D
Sbjct: 57  GGTAGCPLAATLSERFSVLLVERGGSPYGNPLVWNKMYYGFALLQTDEFSSVAESFISKD 116

Query: 121 GVQNHRGRVLGGSSAINGGFYSRAREDFVKKAGWDEELVKKAYEWVESKVVFPPELTPWQ 180
           GVQ HRGRVLGGSSAING FYSRA  DFVK+ GWDEELVK+AYEWVESK+VF PEL+ WQ
Sbjct: 117 GVQGHRGRVLGGSSAINGAFYSRASNDFVKRIGWDEELVKEAYEWVESKIVFRPELSIWQ 176

Query: 181 SVVEFGLLEAGILPYNGYSLEHIEGTKIGGTAFDQCGKRHTSADLLEAGNPKNLVVLLNA 240
           SV+EFGLLEAG LPYNG+S +HIEGTKIGGT +D+ G RHTSADLL AGN +N+ VLL A
Sbjct: 177 SVLEFGLLEAGFLPYNGFSWDHIEGTKIGGTTYDEFGVRHTSADLLGAGNLENITVLLYA 236

Query: 241 TVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSP 300
           TV NIIF NNG  NE  AHGIRFIKS+GS++ ++EAYLN+P NSS+WGDVILSAGALGSP
Sbjct: 237 TVKNIIFHNNGSENERIAHGIRFIKSNGSTDQIYEAYLNQPKNSSSWGDVILSAGALGSP 296

Query: 301 QLLLLSGIGPHDHLKDLNIPTIVDLQEVGEGMQDNPCIAKLVDTMPQKRLPEPPEVV--- 357
           Q+L+LSGIGP  HLK+ +IP + DL+ VG+ M+DNP IA L DT  + RLP+ P+VV   
Sbjct: 297 QILMLSGIGPQKHLKNFSIPLVWDLKGVGQEMKDNPAIALLADTNAEYRLPDTPQVVGIA 356

Query: 358 --------AGVLPISSNASRMPIAAKLAFPISKGKLELDSTDPRQNPSIKFNYLAKEKDL 409
                    G+LPIS NA+RMPIA KLAFP SKGKL+L +TDPRQNP +KFNYLA+EKDL
Sbjct: 357 KDFKFIVEGGILPISFNATRMPIAVKLAFPESKGKLKLYNTDPRQNPLVKFNYLAEEKDL 416

Query: 410 HECVKMVQLLDKVTKSQSVSSFLGIKPQEKLMSNSDELRKLCKNNVRTFYHYHGGCIVGS 469
             CV+M QLL +V++S+SV+ FL  +PQ  L+S+  ELR  CK NVRT+YHYHGGC VGS
Sbjct: 417 DGCVEMAQLLQRVSRSESVALFLRSEPQNNLLSSPHELRDFCKKNVRTYYHYHGGCTVGS 476

Query: 470 VVDKDYRVYGVKGLRVIDGSTFQESPGTNPMATVMMLGRYQGVKLVEER 518
           VVD DY+VYGVKGLRVIDGSTF ESPGTNPMAT++MLGRYQG++++ +R
Sbjct: 477 VVDNDYKVYGVKGLRVIDGSTFLESPGTNPMATLLMLGRYQGIRILRDR 525

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224109004|ref|XP_002315047.1| predicted protein [Populus trichocarpa] gi|222864087|gb|EEF01218.1| predicted protein [Populus trichocarpa]

 Score =  727 bits (1877), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/494 (70%), Positives = 411/494 (83%), Gaps = 16/494 (3%)

Query: 35  GKEVPYYMTSDVKEVAGKSFDYIVVGGGTTGCPLAATLSDNFSVLLVERGGSPFGNPLVT 94
           GK +PY +TSDV+EV+GKSFDYIVVGGGT GCPLAATLS+ FSVL++ERGGSP+GNPLV+
Sbjct: 1   GKNLPY-LTSDVEEVSGKSFDYIVVGGGTAGCPLAATLSERFSVLVIERGGSPYGNPLVS 59

Query: 95  DKRFFGFSLLQTDEYTSVAQSFISTDGVQNHRGRVLGGSSAINGGFYSRAREDFVKKAGW 154
           DK ++GF L+Q DE++SVAQSF+S DGV++HRGRVLGGSSAINGGFYSRA +DFVK  GW
Sbjct: 60  DKMYYGFPLIQPDEFSSVAQSFVSKDGVESHRGRVLGGSSAINGGFYSRASDDFVKTVGW 119

Query: 155 DEELVKKAYEWVESKVVFPPELTPWQSVVEFGLLEAGILPYNGYSLEHIEGTKIGGTAFD 214
           DEELVK+AYEWVES +VF PELT WQSVVE GLLEAGILPYNG+S+EHIEGTKIGGT FD
Sbjct: 120 DEELVKEAYEWVESNIVFKPELTIWQSVVELGLLEAGILPYNGFSMEHIEGTKIGGTLFD 179

Query: 215 QCGKRHTSADLLEAGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMH 274
           + G RHTSADLLE GNP+N++VLLNATV NIIF      NES   G+RFIKSDGS++  +
Sbjct: 180 EYGIRHTSADLLEIGNPENIIVLLNATVKNIIF----HGNESMVRGVRFIKSDGSTSQTY 235

Query: 275 EAYLNKPGNSSTWGDVILSAGALGSPQLLLLSGIGPHDHLKDLNIPTIVDLQEVGEGMQD 334
           EAYLN+P NSS+WGDVILSAGALGSPQ+LLLSGIGP  HL++  IP ++DL+ VG+ M+D
Sbjct: 236 EAYLNQPENSSSWGDVILSAGALGSPQILLLSGIGPEKHLRNFGIPLVLDLKGVGKEMKD 295

Query: 335 NPCIAKLVDTMPQKRLPEPPEVV-----------AGVLPISSNASRMPIAAKLAFPISKG 383
           NP IA L DT P  R P+ P+V             G++PIS NA+RMPIA KLAFP SKG
Sbjct: 296 NPGIALLADTKPTHRFPDAPQVAGITKDMKFIVEGGIVPISFNATRMPIAIKLAFPESKG 355

Query: 384 KLELDSTDPRQNPSIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSFLGIKPQEKLMSN 443
            LEL+STDPRQNP+++F+YL KEKDL EC KMVQLL+K+  S+SV  FLG +PQ  LMS+
Sbjct: 356 TLELNSTDPRQNPAVEFHYLEKEKDLEECTKMVQLLNKIAGSRSVVLFLGKEPQNNLMSS 415

Query: 444 SDELRKLCKNNVRTFYHYHGGCIVGSVVDKDYRVYGVKGLRVIDGSTFQESPGTNPMATV 503
            DELR  CK NVRT+YHYHGG  VGSVVD DY+V+G+KGLRVIDGSTF ESPGTNPMATV
Sbjct: 416 QDELRNFCKKNVRTYYHYHGGSTVGSVVDDDYKVHGIKGLRVIDGSTFLESPGTNPMATV 475

Query: 504 MMLGRYQGVKLVEE 517
           +MLGRYQG+K+V E
Sbjct: 476 LMLGRYQGIKIVRE 489

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356502545|ref|XP_003520079.1| PREDICTED: protein HOTHEAD-like [Glycine max]

 Score =  707 bits (1825), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/532 (63%), Positives = 427/532 (80%), Gaps = 16/532 (3%)

Query: 1   MKFPDTFHSHELLI-AFS-FFLLTLPLFSSSLPEGKGKEVPYYMTSDVKEVAGKSFDYIV 58
           M+ P     H+LL+ AF  FFL +L L     P G  ++  ++MTSDVK+VAGKS+DYI+
Sbjct: 17  MEHPQINKVHKLLLTAFVLFFLASLGLSFPLEPPGNNRQ--WHMTSDVKQVAGKSYDYII 74

Query: 59  VGGGTTGCPLAATLSDNFSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEYTSVAQSFIS 118
           VGGGT GCPLAATLS +FSVLL+ERG SP+GNPLV D+R++GF L++TD+Y SVAQSF S
Sbjct: 75  VGGGTCGCPLAATLSQDFSVLLIERGSSPYGNPLVIDRRYYGFPLIKTDKYMSVAQSFTS 134

Query: 119 TDGVQNHRGRVLGGSSAINGGFYSRAREDFVKKAGWDEELVKKAYEWVESKVVFPP-ELT 177
            DGV N RGRVLGGSSAINGGFYSRA E+FV KAGWD+ELVK+AYEWVESKVVFPP  L+
Sbjct: 135 EDGVGNVRGRVLGGSSAINGGFYSRASEEFVCKAGWDKELVKEAYEWVESKVVFPPFYLS 194

Query: 178 PWQSVVEFGLLEAGILPYNGYSLEHIEGTKIGGTAFDQCGKRHTSADLLEAGNPKNLVVL 237
           PWQSV EF +LEAG+LPYNG+SLEHI+GTKI G+ FD+ GKRHTSADLL AGNP NL VL
Sbjct: 195 PWQSVAEFSILEAGVLPYNGFSLEHIKGTKISGSVFDEFGKRHTSADLLNAGNPNNLTVL 254

Query: 238 LNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGAL 297
           LNATV +IIF ++   NE+RA GIRFI+S+G+ +  +EAY+NK  NSS+ GDVIL+AGAL
Sbjct: 255 LNATVKSIIFHHSSNRNETRAKGIRFIQSNGTLDETYEAYINKAKNSSSKGDVILAAGAL 314

Query: 298 GSPQLLLLSGIGPHDHLKDLNIPTIVDLQEVGEGMQDNPCIAKLVDTMPQKRLPEPPEVV 357
           GSPQL++LSGIGP + L+  NI  + +++ VG+GMQDNPCIA LVD+ PQ RLP+PP++ 
Sbjct: 315 GSPQLMMLSGIGPKEQLRRFNISIVHEMKGVGQGMQDNPCIAVLVDSKPQNRLPDPPQIA 374

Query: 358 -----------AGVLPISSNASRMPIAAKLAFPISKGKLELDSTDPRQNPSIKFNYLAKE 406
                      A +LP++SN+SR+ +AAK+A P SKG LEL++TDPR NPS++FNYLA +
Sbjct: 375 GITDDFKIIVEASILPLTSNSSRVNVAAKIAMPTSKGMLELNNTDPRLNPSVRFNYLASD 434

Query: 407 KDLHECVKMVQLLDKVTKSQSVSSFLGIKPQEKLMSNSDELRKLCKNNVRTFYHYHGGCI 466
            D+ ECVKM +LL+++ +S+S++ FLG   QEKL S   +LR  CK NVRT YHYHGGC 
Sbjct: 435 DDMEECVKMTKLLERIARSKSIAFFLGESKQEKLTSTDIDLRNFCKKNVRTIYHYHGGCT 494

Query: 467 VGSVVDKDYRVYGVKGLRVIDGSTFQESPGTNPMATVMMLGRYQGVKLVEER 518
           VGSVVD+ Y+VYG+KGLR++DGSTF ESPGTNPMA+++MLGRYQG+K++ ER
Sbjct: 495 VGSVVDEHYKVYGIKGLRILDGSTFSESPGTNPMASLLMLGRYQGLKILRER 546

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357487063|ref|XP_003613819.1| (R)-mandelonitrile lyase [Medicago truncatula] gi|355515154|gb|AES96777.1| (R)-mandelonitrile lyase [Medicago truncatula]

 Score =  707 bits (1824), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/531 (63%), Positives = 419/531 (78%), Gaps = 13/531 (2%)

Query: 1   MKFPDTFHSHELLIAFSFFLLTLPLFSSSLPEGKGKEVPYYMTSDVKEVAGKSFDYIVVG 60
           M+ P   H H+ LI     L+ L     S P     +  ++MTSDVKEVAGKS+DYI+VG
Sbjct: 1   MELPQIKHFHKPLIVVFLLLIVLANCGFSFPSEPQGKRQWHMTSDVKEVAGKSYDYIIVG 60

Query: 61  GGTTGCPLAATLSDNFSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDE-YTSVAQSFIST 119
           GGT GCPLAATLS+ FSVLL+ERGGSP+GNPLV D+R++GF L+Q D  + SVAQ F S 
Sbjct: 61  GGTCGCPLAATLSEKFSVLLIERGGSPYGNPLVIDRRYYGFPLIQKDNNHMSVAQRFTSE 120

Query: 120 DGVQNHRGRVLGGSSAINGGFYSRAREDFVKKAGWDEELVKKAYEWVESKVVFPPE-LTP 178
           +GV N RGRVLGGSSAINGGFYSRA ++FV K GWD++LVK+AYEWVESKVVFPP  LTP
Sbjct: 121 EGVSNVRGRVLGGSSAINGGFYSRASDEFVDKVGWDKKLVKEAYEWVESKVVFPPFFLTP 180

Query: 179 WQSVVEFGLLEAGILPYNGYSLEHIEGTKIGGTAFDQCGKRHTSADLLEAGNPKNLVVLL 238
           WQSV EF LLE GILPYNGYSLEHI GTKI G+ FD  GKRHTSADLLEAGNPKNL VL+
Sbjct: 181 WQSVAEFSLLETGILPYNGYSLEHIRGTKISGSVFDGFGKRHTSADLLEAGNPKNLTVLV 240

Query: 239 NATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALG 298
           NATV  IIF  NG  NE+RA GI+FIKS+GS +  +EA++ KP +S++ GDVILSAGALG
Sbjct: 241 NATVKKIIFHYNGDKNETRAKGIKFIKSNGSLDETYEAFIKKPNHSTSRGDVILSAGALG 300

Query: 299 SPQLLLLSGIGPHDHLKDLNIPTIVDLQEVGEGMQDNPCIAKLVDTMPQKRLPEPPEVV- 357
           SPQLLLLSGIGP + LK  NIP + ++++VG+GMQDNPCIA LVD+ P+ RLP+PP++  
Sbjct: 301 SPQLLLLSGIGPKEQLKKFNIPLVHEMKQVGQGMQDNPCIAILVDSKPENRLPDPPQIAG 360

Query: 358 ----------AGVLPISSNASRMPIAAKLAFPISKGKLELDSTDPRQNPSIKFNYLAKEK 407
                     A +LP+S N SR+ IAAK+A P+SKG LEL++TDPR NP++KFNYL  E 
Sbjct: 361 ITEDLKIIVEASILPLSINESRVNIAAKIAMPLSKGYLELNNTDPRLNPTVKFNYLENEN 420

Query: 408 DLHECVKMVQLLDKVTKSQSVSSFLGIKPQEKLMSNSDELRKLCKNNVRTFYHYHGGCIV 467
           D+ EC+KM +LL+K+ +S+S++ FLG   Q KL+S   +LRK CK NVRT YHYHGGC V
Sbjct: 421 DMQECIKMTKLLNKIARSKSIAFFLGESQQSKLVSTEFDLRKFCKKNVRTIYHYHGGCNV 480

Query: 468 GSVVDKDYRVYGVKGLRVIDGSTFQESPGTNPMATVMMLGRYQGVKLVEER 518
           G+V+DKDY+V+G+KGL+V+DGSTF ESPGTNPMAT++MLGRYQG+K++++R
Sbjct: 481 GTVLDKDYKVHGIKGLKVLDGSTFSESPGTNPMATLLMLGRYQGIKILQQR 531

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356498308|ref|XP_003517995.1| PREDICTED: protein HOTHEAD-like [Glycine max]

 Score =  703 bits (1814), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/490 (66%), Positives = 406/490 (82%), Gaps = 12/490 (2%)

Query: 42  MTSDVKEVAGKSFDYIVVGGGTTGCPLAATLSDNFSVLLVERGGSPFGNPLVTDKRFFGF 101
           MTSDVKEVAGKS+DYI+VGGGT GCPLAATLS+ FSVLL+ERGGSP+GNPLV D+R++GF
Sbjct: 1   MTSDVKEVAGKSYDYIIVGGGTCGCPLAATLSEKFSVLLIERGGSPYGNPLVIDRRYYGF 60

Query: 102 SLLQTDEYTSVAQSFISTDGVQNHRGRVLGGSSAINGGFYSRAREDFVKKAGWDEELVKK 161
            L++TD+Y SVAQSF S DG+ N RGRVLGGSSAINGGFYSRA E+FV KAGWD+ELVK+
Sbjct: 61  PLIKTDKYMSVAQSFTSEDGIGNVRGRVLGGSSAINGGFYSRASEEFVCKAGWDKELVKE 120

Query: 162 AYEWVESKVVFPP-ELTPWQSVVEFGLLEAGILPYNGYSLEHIEGTKIGGTAFDQCGKRH 220
           AYEWVESKVVFPP  L+PWQSV EF +LEAG+LPYNG+SLEHI+GTKI G+ FD+ GKRH
Sbjct: 121 AYEWVESKVVFPPFYLSPWQSVAEFSILEAGVLPYNGFSLEHIKGTKISGSVFDEFGKRH 180

Query: 221 TSADLLEAGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNK 280
           TSADLL AGNPKNL VLLNATV +IIF ++   NE+RA GIRFI+S+G+ +  +EAY+NK
Sbjct: 181 TSADLLNAGNPKNLTVLLNATVKSIIFHHSSYRNETRAKGIRFIQSNGTLDETYEAYINK 240

Query: 281 PGNSSTWGDVILSAGALGSPQLLLLSGIGPHDHLKDLNIPTIVDLQEVGEGMQDNPCIAK 340
             NSS+ GDVIL+AGALGSPQL++LSGIGP + L+  NI  + +++ VG+GMQDNPCIA 
Sbjct: 241 AKNSSSRGDVILAAGALGSPQLMMLSGIGPKEQLRRFNISIVREMKGVGQGMQDNPCIAV 300

Query: 341 LVDTMPQKRLPEPPEVV-----------AGVLPISSNASRMPIAAKLAFPISKGKLELDS 389
           LVD+ PQ RLP+PP++            A + P+SSN+SR+ +AAK+A P SKG LEL++
Sbjct: 301 LVDSKPQNRLPDPPQIAGITDDFKIIVEASIFPLSSNSSRVNVAAKIAMPTSKGVLELNN 360

Query: 390 TDPRQNPSIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSFLGIKPQEKLMSNSDELRK 449
           TDPR NPS++FNYLA E D+ ECVKM +LL+++ +S+S++ FLG   QEKL S   +LR 
Sbjct: 361 TDPRLNPSVRFNYLASEDDMEECVKMTKLLERIARSKSIAFFLGESKQEKLTSTDVDLRN 420

Query: 450 LCKNNVRTFYHYHGGCIVGSVVDKDYRVYGVKGLRVIDGSTFQESPGTNPMATVMMLGRY 509
            CK NVRT YHYHGGC VGSVVD+  +VYG+KGLR++DGSTF ESPGTNPMAT++MLGRY
Sbjct: 421 FCKKNVRTIYHYHGGCTVGSVVDEQNKVYGIKGLRILDGSTFSESPGTNPMATILMLGRY 480

Query: 510 QGVKLVEERR 519
           QG++++ ER+
Sbjct: 481 QGLQILRERK 490

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101361|ref|XP_002312249.1| predicted protein [Populus trichocarpa] gi|222852069|gb|EEE89616.1| predicted protein [Populus trichocarpa]

 Score =  691 bits (1783), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/493 (66%), Positives = 402/493 (81%), Gaps = 18/493 (3%)

Query: 42  MTSDVKEVAGKSFDYIVVGGGTTGCPLAATLSDNFSVLLVERGGSPFGNPLVTDKRFFGF 101
           MT DV +++G+SFDYI+VGGGT GCPLAATLS+ +SVLLVERG SP+ NP V DKRF+GF
Sbjct: 1   MTPDVTQISGRSFDYIIVGGGTAGCPLAATLSERYSVLLVERGSSPYKNPFVLDKRFYGF 60

Query: 102 SLLQTDEYTSVAQSFISTDGVQNHRGRVLGGSSAINGGFYSRAREDFVKKAGWDEELVKK 161
           +L QT+E++SV+QSFIS DGV N RGRVLGGSSAINGGFYSRA + FV++AGWDEELVK+
Sbjct: 61  ALFQTNEFSSVSQSFISKDGVSNLRGRVLGGSSAINGGFYSRASDAFVRRAGWDEELVKE 120

Query: 162 AYEWVESKVVFPPELTPWQSVVEFGLLEAGILPYNGYSLEHIEGTKIGGTAFDQCGKRHT 221
           +Y+WVESK+VF PELT WQS V+FGLLEAGILPYNG+SLEH+EGTK+G T FD  G+RHT
Sbjct: 121 SYKWVESKMVFKPELTKWQSAVKFGLLEAGILPYNGFSLEHVEGTKMGRTVFDHDGRRHT 180

Query: 222 SADLLEAGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKP 281
           SADLLE GNP N+VVLLNATV NIIF   G  NE+  HGIRFIKSDG+ +  +EAYL + 
Sbjct: 181 SADLLETGNPDNIVVLLNATVKNIIFHKKGTENETTVHGIRFIKSDGNVSQTYEAYLKQL 240

Query: 282 GNSSTWGDVILSAGALGSPQLLLLSGIGPHDHLKDLNIPTIVDLQEVGEGMQDNPCIAKL 341
            NS +WGDVILSAG LGSPQ+LLLSGIGP  HLK+  IP ++D  E+G+ M DNP I+ L
Sbjct: 241 ENSGSWGDVILSAGTLGSPQILLLSGIGPKRHLKNFGIPLVLDFPEIGQEMVDNPSISVL 300

Query: 342 VDTMPQKRLPEPPEVVAG-----------VLPISSNASRMPIAAKLAFPISKGKLELDST 390
           +++ PQ +LP+PP++V             +LPIS NA+R+PI+ KLAFP SKGKLEL+ST
Sbjct: 301 LESDPQVQLPDPPQIVGIADDFKFIVQGLILPISINATRIPISIKLAFPASKGKLELNST 360

Query: 391 DPRQNPSIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSFLGIKPQEKLMSNSD---EL 447
           DPRQNP ++FNYLAKEKD+ EC+KMVQL+++V +S+S++ FLG    ++  SNS    E 
Sbjct: 361 DPRQNPLVEFNYLAKEKDMKECIKMVQLVERVARSKSIAGFLG----KEHYSNSKSPREQ 416

Query: 448 RKLCKNNVRTFYHYHGGCIVGSVVDKDYRVYGVKGLRVIDGSTFQESPGTNPMATVMMLG 507
           R+ CK NVRTFYHYHGGC VGSVVD DYRV+GVKGLRV+DGSTF ESPGTNPMAT++MLG
Sbjct: 417 REFCKKNVRTFYHYHGGCAVGSVVDNDYRVHGVKGLRVVDGSTFLESPGTNPMATLLMLG 476

Query: 508 RYQGVKLVEERRE 520
           RYQG+K++ E  +
Sbjct: 477 RYQGIKILAENNQ 489

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224109006|ref|XP_002315048.1| predicted protein [Populus trichocarpa] gi|222864088|gb|EEF01219.1| predicted protein [Populus trichocarpa]

 Score =  681 bits (1757), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/532 (63%), Positives = 410/532 (77%), Gaps = 16/532 (3%)

Query: 1   MKFPDTFHSHELLIAFSFFLLTLPLFSSSLPEGKGKEVPYYMTSDVKEVAGKSFDYIVVG 60
           M+     H H LL AF F L+ L   SSSLP+G G  +PY MTS+VKEV GKSFDYI+VG
Sbjct: 1   MELLSIIHGHGLLAAFIFLLVNLSP-SSSLPQGYG--LPY-MTSNVKEVLGKSFDYIIVG 56

Query: 61  GGTTGCPLAATLSDNFSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEYTSVAQSFISTD 120
           GGT GCPLAATLS+ FSVLL+ERGGSP+ NP++ DK++FGF  LQTDE++SVAQ FIS D
Sbjct: 57  GGTAGCPLAATLSEKFSVLLIERGGSPYENPMLLDKKYFGFPFLQTDEFSSVAQRFISRD 116

Query: 121 GVQNHRGRVLGGSSAINGGFYSRAREDFVKKAGWDEELVKKAYEWVESKVVFPPELTPWQ 180
           GV N RGRVLGG+S IN GFYSRA  DF+K+ GWDE+LVK+AYEW ESKVVF P LT W 
Sbjct: 117 GVPNLRGRVLGGTSTINAGFYSRASADFIKRVGWDEKLVKEAYEWAESKVVFKPLLTKWN 176

Query: 181 SVVEFGLLEAGILPYNGYSLEHIEGTKIGGTAFDQCGKRHTSADLLEAGNPKNLVVLLNA 240
           S V+ GLLEAGILPYNG+S +HI GTKIGGT FD   KRH SADLLE GN  N+VVLLNA
Sbjct: 177 SAVKSGLLEAGILPYNGFSWDHIAGTKIGGTVFDANRKRHISADLLERGNSSNIVVLLNA 236

Query: 241 TVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSP 300
           TV NI+F ++ K  +S   GIRFI S+GS N  +E+YL +P NSS  GDVILSAGA+GSP
Sbjct: 237 TVKNIVFRSDDKGKKSIVRGIRFINSNGSINQTYESYLTQPENSSPQGDVILSAGAIGSP 296

Query: 301 QLLLLSGIGPHDHLKDLNIPTIVDLQEVGEGMQDNPCIAKLVDTMPQKRLPEPPEVV--- 357
           Q+LLLSGIGP  HL + +IP ++DL+ VG+ MQDNP I  ++   P+ RLPE P+VV   
Sbjct: 297 QILLLSGIGPKGHLGNFSIPLLLDLKGVGQDMQDNPGITLILRAKPEYRLPESPQVVGIA 356

Query: 358 --------AGVLPISSNASR-MPIAAKLAFPISKGKLELDSTDPRQNPSIKFNYLAKEKD 408
                     VLP+S NA+  M I+ KLAFP SKG+LEL++TDPRQNP + FNYLA+EKD
Sbjct: 357 KDFKFVVEGFVLPVSFNATTLMRISIKLAFPESKGRLELNNTDPRQNPVVLFNYLAEEKD 416

Query: 409 LHECVKMVQLLDKVTKSQSVSSFLGIKPQEKLMSNSDELRKLCKNNVRTFYHYHGGCIVG 468
           L ECV+MVQL+ KV +S+S++ FLG KP   + SN +ELR  C+ NVRT+YH+HGGC +G
Sbjct: 417 LRECVQMVQLVKKVARSRSIARFLGAKPLINVTSNPNELRNFCRKNVRTYYHFHGGCSIG 476

Query: 469 SVVDKDYRVYGVKGLRVIDGSTFQESPGTNPMATVMMLGRYQGVKLVEERRE 520
           SV+D DY+V GVKGLRVIDGST  ESPGTNPMAT++MLGRYQG+K+++ER +
Sbjct: 477 SVIDNDYKVIGVKGLRVIDGSTLSESPGTNPMATLLMLGRYQGIKILKERED 528

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297844322|ref|XP_002890042.1| glucose-methanol-choline oxidoreductase family protein [Arabidopsis lyrata subsp. lyrata] gi|297335884|gb|EFH66301.1| glucose-methanol-choline oxidoreductase family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  649 bits (1674), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/523 (60%), Positives = 401/523 (76%), Gaps = 30/523 (5%)

Query: 9   SHELLIAFSFFLLTLPLFSSSLPEGKGKEVPYYMTSDVKEVAGKSFDYIVVGGGTTGCPL 68
           SH + +   F  + L          +G ++PY MT+D KEV+GKSFDYIVVGGGT GC L
Sbjct: 2   SHFVFLFIIFMFINL---------SEGAQMPY-MTTDPKEVSGKSFDYIVVGGGTAGCSL 51

Query: 69  AATLSDNFSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEYTSVAQSFISTDGVQNHRGR 128
           AATLS+ +SVL++ERGGSPFG+PLV ++R+FG+SLL TDEY+SVAQSF S DG++N+RGR
Sbjct: 52  AATLSEKYSVLVIERGGSPFGDPLVEERRYFGYSLLNTDEYSSVAQSFTSVDGIENYRGR 111

Query: 129 VLGGSSAINGGFYSRAREDFVKKAGWDEELVKKAYEWVESKVVFPPELTPWQSVVEFGLL 188
           VLGGSSAINGGFYSRA ++FVKK GWD++LV+  Y+WVESKVVF PELT WQSVV+FG L
Sbjct: 112 VLGGSSAINGGFYSRASDEFVKKTGWDKDLVQDCYKWVESKVVFMPELTQWQSVVQFGFL 171

Query: 189 EAGILPYNGYSLEHIEGTKIGGTAFDQCGKRHTSADLLEAGNPKNLVVLLNATVNNIIFS 248
           EAG  PYNGYSLEH +GTKIGG+ +DQCGKRHTSADLL  G P  + VLLNATV +IIF 
Sbjct: 172 EAGFYPYNGYSLEHTQGTKIGGSIYDQCGKRHTSADLLGFGKPNYITVLLNATVQSIIFD 231

Query: 249 NNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSGI 308
               AN++RA G+RF++SD +SN  ++A++ K       G+VIL+AGALGSPQ+LLLSGI
Sbjct: 232 ----ANKTRAVGVRFMESDENSNKSYKAHVEK-----HRGEVILTAGALGSPQILLLSGI 282

Query: 309 GPHDHLKDLNIPTIVDLQEVGEGMQDNPCIAKLVDTMPQKRLPEPPEVVA---------- 358
           GP +HLKD +IP IV+L+EVG  M DNP I+ LVD   Q R  EPP+V A          
Sbjct: 283 GPENHLKDFDIPVIVNLKEVGRKMSDNPAISLLVDRFSQNRTLEPPQVAAIAEGYKFILE 342

Query: 359 -GVLPISSNASRMPIAAKLAFPISKGKLELDSTDPRQNPSIKFNYLAKEKDLHECVKMVQ 417
             VLP     +R+ IAAK+AFP SKG+L+L+ST+P +NP++KFNYL  ++DL  C +MV 
Sbjct: 343 SAVLPTDITTTRISIAAKIAFPKSKGRLKLNSTNPMENPAVKFNYLKNKEDLDACQEMVL 402

Query: 418 LLDKVTKSQSVSSFLGIKPQEKLMSNSDELRKLCKNNVRTFYHYHGGCIVGSVVDKDYRV 477
            L  V +S+ V+ FLG + Q+KL++  ++L+  CK NVRT+YHYHGGCIVG VVD+ Y+V
Sbjct: 403 HLQHVARSECVTFFLGTQAQDKLVAGDEDLKNFCKQNVRTYYHYHGGCIVGPVVDEAYKV 462

Query: 478 YGVKGLRVIDGSTFQESPGTNPMATVMMLGRYQGVKLVEERRE 520
            GVK LRVIDGSTF+ESPGTNPMATV+MLGRYQG+K+++ER E
Sbjct: 463 NGVKRLRVIDGSTFEESPGTNPMATVLMLGRYQGIKILKEREE 505

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15223677|ref|NP_172871.1| glucose-methanol-choline oxidoreductase-like protein [Arabidopsis thaliana] gi|5080795|gb|AAD39305.1|AC007576_28 Similar to mandelonitrile lyase [Arabidopsis thaliana] gi|332190999|gb|AEE29120.1| glucose-methanol-choline oxidoreductase-like protein [Arabidopsis thaliana]

 Score =  647 bits (1668), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 307/491 (62%), Positives = 393/491 (80%), Gaps = 19/491 (3%)

Query: 41  YMTSDVKEVAGKSFDYIVVGGGTTGCPLAATLSDNFSVLLVERGGSPFGNPLVTDKRFFG 100
           YMT+D KEV+GKSFDYIVVGGGT GC LAATLS+ +SVL++ERGGSPFG+PLV ++++FG
Sbjct: 3   YMTTDAKEVSGKSFDYIVVGGGTAGCSLAATLSEKYSVLVIERGGSPFGDPLVEERKYFG 62

Query: 101 FSLLQTDEYTSVAQSFISTDGVQNHRGRVLGGSSAINGGFYSRAREDFVKKAGWDEELVK 160
           +SLL TDEY+SVAQSF S DG++N+RGRVLGGSSAINGGFYSRA ++FVKKAGWD+ LV+
Sbjct: 63  YSLLNTDEYSSVAQSFTSVDGIENYRGRVLGGSSAINGGFYSRASDEFVKKAGWDKGLVQ 122

Query: 161 KAYEWVESKVVFPPELTPWQSVVEFGLLEAGILPYNGYSLEHIEGTKIGGTAFDQCGKRH 220
           ++Y+WVESKVVF PELT WQSVV+FG LEAG  PYNGYSLEH +GTKIGG+ +DQCGKRH
Sbjct: 123 ESYKWVESKVVFMPELTQWQSVVQFGFLEAGFYPYNGYSLEHTQGTKIGGSIYDQCGKRH 182

Query: 221 TSADLLEAGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNK 280
           TSADLL  G P  + VLLN TV +IIF +   +N++RA G+RF++SDG+S+  ++ ++ +
Sbjct: 183 TSADLLGFGKPNCITVLLNTTVKSIIFDS---SNKTRAVGVRFMESDGNSSKSYKVHVEQ 239

Query: 281 PGNSSTWGDVILSAGALGSPQLLLLSGIGPHDHLKDLNIPTIVDLQEVGEGMQDNPCIAK 340
                  G+VIL+AGALGSPQ+LLLSGIGP +HLKD +IP IV+L+EVG  M DNP I+ 
Sbjct: 240 -----HRGEVILAAGALGSPQILLLSGIGPENHLKDFDIPVIVNLKEVGRKMSDNPAISL 294

Query: 341 LVDTMPQKRLPEPPEVVA-----------GVLPISSNASRMPIAAKLAFPISKGKLELDS 389
           LVD   Q R  EPP+V A            VLP     +R+ IAAK+AFP SKG+L+L+S
Sbjct: 295 LVDRFSQNRTLEPPQVAAIAEGYKFILESEVLPTDITTTRISIAAKIAFPKSKGRLKLNS 354

Query: 390 TDPRQNPSIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSFLGIKPQEKLMSNSDELRK 449
           T+PR+NPS+KFNYL  + DL  C++MV  L  V +S++V+ FLG +  +KL++  +EL+ 
Sbjct: 355 TNPRENPSVKFNYLENKADLDACLEMVLHLQHVARSETVTFFLGTQAHDKLVAGDEELKS 414

Query: 450 LCKNNVRTFYHYHGGCIVGSVVDKDYRVYGVKGLRVIDGSTFQESPGTNPMATVMMLGRY 509
            C  NVRT+YHYHGGC+VGSVVD++Y+V GVK LRV+DGSTF+ESPGTNPMATV+MLGRY
Sbjct: 415 FCIKNVRTYYHYHGGCVVGSVVDEEYKVNGVKRLRVVDGSTFEESPGTNPMATVLMLGRY 474

Query: 510 QGVKLVEERRE 520
           QG+K+++ER E
Sbjct: 475 QGIKILKEREE 485

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18394079|ref|NP_563939.1| glucose-methanol-choline (GMC) oxidoreductase-like protein [Arabidopsis thaliana] gi|5080794|gb|AAD39304.1|AC007576_27 Similar to mandelonitrile lyase [Arabidopsis thaliana] gi|16930499|gb|AAL31935.1|AF419603_1 At1g14180/F7A19_27 [Arabidopsis thaliana] gi|22137038|gb|AAM91364.1| At1g14180/F7A19_27 [Arabidopsis thaliana] gi|332190998|gb|AEE29119.1| glucose-methanol-choline (GMC) oxidoreductase-like protein [Arabidopsis thaliana]

 Score =  644 bits (1660), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 309/511 (60%), Positives = 403/511 (78%), Gaps = 24/511 (4%)

Query: 19  FLLTLPLFSSSLPEGKGKEVPYYMTSDVKEVAGKSFDYIVVGGGTTGCPLAATLSDNFSV 78
           FL  + +F   +   +G ++PY MT+D KEV+GKSFDYIVVGGGT GC LAATLS+ +SV
Sbjct: 6   FLFIISMF---INLSQGAQMPY-MTTDPKEVSGKSFDYIVVGGGTAGCSLAATLSEKYSV 61

Query: 79  LLVERGGSPFGNPLVTDKRFFGFSLLQTDEYTSVAQSFISTDGVQNHRGRVLGGSSAING 138
           L++ERGGSPFG+PLV DK+++G+SL+ TDEY+SVAQSF S DG++NHRGRVLGGSSAING
Sbjct: 62  LVIERGGSPFGDPLVEDKKYYGYSLINTDEYSSVAQSFTSVDGIKNHRGRVLGGSSAING 121

Query: 139 GFYSRAREDFVKKAGWDEELVKKAYEWVESKVVFPPELTPWQSVVEFGLLEAGILPYNGY 198
           GFYSRA ++FVKKAGWD++LV+++Y+WVESKVVF PELT WQS+V+FG LEAG  PYNGY
Sbjct: 122 GFYSRASDEFVKKAGWDKDLVQESYKWVESKVVFMPELTRWQSIVQFGFLEAGFYPYNGY 181

Query: 199 SLEHIEGTKIGGTAFDQCGKRHTSADLLEAGNPKNLVVLLNATVNNIIFSNNGKANESRA 258
           SLEH +GTKIGG+ FDQCGKRHTSADLL  G P  + VLLNATV +IIF     AN++RA
Sbjct: 182 SLEHTQGTKIGGSIFDQCGKRHTSADLLGYGKPNCITVLLNATVKSIIFD----ANKTRA 237

Query: 259 HGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSGIGPHDHLKDLN 318
            G+RF++SDG+S+  ++ ++ +       G+VIL+AGALGSPQ+LLLSGIGP +HL D +
Sbjct: 238 VGVRFMESDGNSSKSYKVHVEQ-----HRGEVILAAGALGSPQILLLSGIGPENHLNDFD 292

Query: 319 IPTIVDLQEVGEGMQDNPCIAKLVDTMPQKRLPEPPEVVAG-----------VLPISSNA 367
           IP IV+L+EVG+ M DNP I+ LVD   Q    +PP+VVA            VLP +   
Sbjct: 293 IPVIVNLKEVGKQMSDNPAISLLVDRFSQNLTVDPPQVVAITEGFKFILQSLVLPTNITT 352

Query: 368 SRMPIAAKLAFPISKGKLELDSTDPRQNPSIKFNYLAKEKDLHECVKMVQLLDKVTKSQS 427
           +R  I+AK+AFP SKG+L+L++T+PR+NPS+ FNYL  + DL  C +MV  L  V +S++
Sbjct: 353 TRTAISAKIAFPKSKGRLKLNNTNPRENPSVTFNYLENKADLDACQEMVLHLQHVARSKT 412

Query: 428 VSSFLGIKPQEKLMSNSDELRKLCKNNVRTFYHYHGGCIVGSVVDKDYRVYGVKGLRVID 487
           V+ FLG + Q+KL++  +EL+K C  NVRT+YHYHGGC+VGSVV+++Y+V GVK LRV+D
Sbjct: 413 VTFFLGTQAQDKLVAGDEELKKFCIKNVRTYYHYHGGCVVGSVVNEEYKVNGVKRLRVVD 472

Query: 488 GSTFQESPGTNPMATVMMLGRYQGVKLVEER 518
           GSTF+ESPGTNPMATV+MLGRYQG+K+++E 
Sbjct: 473 GSTFEESPGTNPMATVLMLGRYQGIKILKEH 503

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	523
TAIR|locus:2035830	501	AT1G14190 [Arabidopsis thalian	0.902	0.942	0.615	1.3e-162
TAIR|locus:505006121	503	AT1G14185 [Arabidopsis thalian	0.906	0.942	0.606	4e-161
TAIR|locus:2173068	586	AT5G51950 [Arabidopsis thalian	0.598	0.534	0.475	4.5e-105
TAIR|locus:2034705	572	AT1G12570 [Arabidopsis thalian	0.535	0.489	0.501	1e-103
TAIR|locus:2032627	594	HTH "HOTHEAD" [Arabidopsis tha	0.686	0.604	0.444	5.3e-100
TAIR|locus:2173053	582	AT5G51930 [Arabidopsis thalian	0.514	0.462	0.508	1.4e-97
TAIR|locus:2032642	552	AT1G73050 [Arabidopsis thalian	0.546	0.518	0.462	1.3e-96
TAIR|locus:2078441	577	AT3G56060 [Arabidopsis thalian	0.680	0.616	0.442	4.8e-71
UNIPROTKB|Q945K2	563	MDL2 "(R)-mandelonitrile lyase	0.715	0.664	0.380	5.2e-65
TIGR_CMR|CPS_1334	560	CPS_1334 "choline dehydrogenas	0.248	0.232	0.330	1.7e-27

TAIR|locus:2035830 AT1G14190 [Arabidopsis thaliana (taxid:3702)]

 Score = 1583 (562.3 bits), Expect = 1.3e-162, P = 1.3e-162
 Identities = 302/491 (61%), Positives = 386/491 (78%)

Query:    41 YMTSDVKEVAGKSFDYIVVGGGTTGCPLAATLSDNFSVLLVERGGSPFGNPLVTDKRFFG 100
             YMT+D KEV+GKSFDYIVVGGGT GC LAATLS+ +SVL++ERGGSPFG+PLV ++++FG
Sbjct:     3 YMTTDAKEVSGKSFDYIVVGGGTAGCSLAATLSEKYSVLVIERGGSPFGDPLVEERKYFG 62

Query:   101 FSLLQTDEYTSVAQSFISTDGVQNHRGRVLGGSSAINGGFYSRAREDFVKKAGWDEELVK 160
             +SLL TDEY+SVAQSF S DG++N+RGRVLGGSSAINGGFYSRA ++FVKKAGWD+ LV+
Sbjct:    63 YSLLNTDEYSSVAQSFTSVDGIENYRGRVLGGSSAINGGFYSRASDEFVKKAGWDKGLVQ 122

Query:   161 KAYEWVESKVVFPPELTPWQSVVEFGLLEAGILPYNGYSLEHIEGTKIGGTAFDQCGKRH 220
             ++Y+WVESKVVF PELT WQSVV+FG LEAG  PYNGYSLEH +GTKIGG+ +DQCGKRH
Sbjct:   123 ESYKWVESKVVFMPELTQWQSVVQFGFLEAGFYPYNGYSLEHTQGTKIGGSIYDQCGKRH 182

Query:   221 TSADLLEAGNPKXXXXXXXXXXXXIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNK 280
             TSADLL  G P             IIF ++   N++RA G+RF++SDG+S+  ++ ++ +
Sbjct:   183 TSADLLGFGKPNCITVLLNTTVKSIIFDSS---NKTRAVGVRFMESDGNSSKSYKVHVEQ 239

Query:   281 PGNSSTWGDVILSAGALGSPQLLLLSGIGPHDHLKDLNIPTIVDLQEVGEGMQDNPCIAK 340
                    G+VIL+AGALGSPQ+LLLSGIGP +HLKD +IP IV+L+EVG  M DNP I+ 
Sbjct:   240 HR-----GEVILAAGALGSPQILLLSGIGPENHLKDFDIPVIVNLKEVGRKMSDNPAISL 294

Query:   341 LVDTMPQKRLPEPPEVVA---G--------VLPISSNASRMPIAAKLAFPISKGKLELDS 389
             LVD   Q R  EPP+V A   G        VLP     +R+ IAAK+AFP SKG+L+L+S
Sbjct:   295 LVDRFSQNRTLEPPQVAAIAEGYKFILESEVLPTDITTTRISIAAKIAFPKSKGRLKLNS 354

Query:   390 TDPRQNPSIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSFLGIKPQEKLMSNSDELRK 449
             T+PR+NPS+KFNYL  + DL  C++MV  L  V +S++V+ FLG +  +KL++  +EL+ 
Sbjct:   355 TNPRENPSVKFNYLENKADLDACLEMVLHLQHVARSETVTFFLGTQAHDKLVAGDEELKS 414

Query:   450 LCKNNVRTFYHYHGGCIVGSVVDKDYRVYGVKGLRVIDGSTFQESPGTNPMATVMMLGRY 509
              C  NVRT+YHYHGGC+VGSVVD++Y+V GVK LRV+DGSTF+ESPGTNPMATV+MLGRY
Sbjct:   415 FCIKNVRTYYHYHGGCVVGSVVDEEYKVNGVKRLRVVDGSTFEESPGTNPMATVLMLGRY 474

Query:   510 QGVKLVEERRE 520
             QG+K+++ER E
Sbjct:   475 QGIKILKEREE 485

GO:0005634 "nucleus" evidence=ISM

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0008812 "choline dehydrogenase activity" evidence=IEA

GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA

GO:0016832 "aldehyde-lyase activity" evidence=ISS

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:505006121 AT1G14185 [Arabidopsis thaliana (taxid:3702)]

 Score = 1569 (557.4 bits), Expect = 4.0e-161, P = 4.0e-161
 Identities = 300/495 (60%), Positives = 389/495 (78%)

Query:    34 KGKEVPYYMTSDVKEVAGKSFDYIVVGGGTTGCPLAATLSDNFSVLLVERGGSPFGNPLV 93
             +G ++PY MT+D KEV+GKSFDYIVVGGGT GC LAATLS+ +SVL++ERGGSPFG+PLV
Sbjct:    18 QGAQMPY-MTTDPKEVSGKSFDYIVVGGGTAGCSLAATLSEKYSVLVIERGGSPFGDPLV 76

Query:    94 TDKRFFGFSLLQTDEYTSVAQSFISTDGVQNHRGRVLGGSSAINGGFYSRAREDFVKKAG 153
              DK+++G+SL+ TDEY+SVAQSF S DG++NHRGRVLGGSSAINGGFYSRA ++FVKKAG
Sbjct:    77 EDKKYYGYSLINTDEYSSVAQSFTSVDGIKNHRGRVLGGSSAINGGFYSRASDEFVKKAG 136

Query:   154 WDEELVKKAYEWVESKVVFPPELTPWQSVVEFGLLEAGILPYNGYSLEHIEGTKIGGTAF 213
             WD++LV+++Y+WVESKVVF PELT WQS+V+FG LEAG  PYNGYSLEH +GTKIGG+ F
Sbjct:   137 WDKDLVQESYKWVESKVVFMPELTRWQSIVQFGFLEAGFYPYNGYSLEHTQGTKIGGSIF 196

Query:   214 DQCGKRHTSADLLEAGNPKXXXXXXXXXXXXIIFSNNGKANESRAHGIRFIKSDGSSNHM 273
             DQCGKRHTSADLL  G P             IIF     AN++RA G+RF++SDG+S+  
Sbjct:   197 DQCGKRHTSADLLGYGKPNCITVLLNATVKSIIFD----ANKTRAVGVRFMESDGNSSKS 252

Query:   274 HEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSGIGPHDHLKDLNIPTIVDLQEVGEGMQ 333
             ++ ++ +       G+VIL+AGALGSPQ+LLLSGIGP +HL D +IP IV+L+EVG+ M 
Sbjct:   253 YKVHVEQHR-----GEVILAAGALGSPQILLLSGIGPENHLNDFDIPVIVNLKEVGKQMS 307

Query:   334 DNPCIAKLVDTMPQKRLPEPPEVVA---G--------VLPISSNASRMPIAAKLAFPISK 382
             DNP I+ LVD   Q    +PP+VVA   G        VLP +   +R  I+AK+AFP SK
Sbjct:   308 DNPAISLLVDRFSQNLTVDPPQVVAITEGFKFILQSLVLPTNITTTRTAISAKIAFPKSK 367

Query:   383 GKLELDSTDPRQNPSIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSFLGIKPQEKLMS 442
             G+L+L++T+PR+NPS+ FNYL  + DL  C +MV  L  V +S++V+ FLG + Q+KL++
Sbjct:   368 GRLKLNNTNPRENPSVTFNYLENKADLDACQEMVLHLQHVARSKTVTFFLGTQAQDKLVA 427

Query:   443 NSDELRKLCKNNVRTFYHYHGGCIVGSVVDKDYRVYGVKGLRVIDGSTFQESPGTNPMAT 502
               +EL+K C  NVRT+YHYHGGC+VGSVV+++Y+V GVK LRV+DGSTF+ESPGTNPMAT
Sbjct:   428 GDEELKKFCIKNVRTYYHYHGGCVVGSVVNEEYKVNGVKRLRVVDGSTFEESPGTNPMAT 487

Query:   503 VMMLGRYQGVKLVEE 517
             V+MLGRYQG+K+++E
Sbjct:   488 VLMLGRYQGIKILKE 502

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0008812 "choline dehydrogenase activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA

GO:0016832 "aldehyde-lyase activity" evidence=ISS

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2173068 AT5G51950 [Arabidopsis thaliana (taxid:3702)]

 Score = 698 (250.8 bits), Expect = 4.5e-105, Sum P(2) = 4.5e-105
 Identities = 157/330 (47%), Positives = 206/330 (62%)

Query:    54 FDYIVVGGGTTGCPLAATLSDNFSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEYTSVA 113
             FDYI++GGGT+GC LAATLS N SVL++ERGG+P+ NP  TD   F  +L  T    S +
Sbjct:    46 FDYIIIGGGTSGCALAATLSQNASVLVLERGGAPYDNPTATDIENFATTLSNTSP-KSWS 104

Query:   114 QSFISTDGVQNHRGRVLGGSSAINGGFYSRAREDFVKKAGWDEELVKKAYEWVESKVVFP 173
             Q FIS DGV N R RVLGG S +N GFY+RA +++VK+  W  + V+ AYEWVE KV F 
Sbjct:   105 QLFISEDGVYNTRARVLGGGSVLNAGFYTRAGDEYVKETEWKTDEVEAAYEWVEKKVAFQ 164

Query:   174 PELTPWQSVVEFGLLEAGILPYNGYSLEHIEGTKIGGTAFDQCGKRHTSADLLEAGNPKX 233
             P +  WQ+  + GLLEAG  PYNG++ +HI GTKIGGT FD+ G RHT+ADLLE  NP  
Sbjct:   165 PPVLGWQTAFKDGLLEAGEFPYNGFTYDHIYGTKIGGTIFDRAGHRHTAADLLEYANPGN 224

Query:   234 XXXXXXXXXXXIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILS 293
                        I+F+  G+    +A+G+ F  ++G    +H+A L K  NS    +VILS
Sbjct:   225 IVVYLHASVHKILFTTKGRPRP-KAYGVIFQDANGV---LHKAELEK--NSMN--EVILS 276

Query:   294 AGALGSPQLLLLSGIGPHDHLKDLNI-PTIVDLQEVGEGMQDNPCIAKLVDTMPQKRLPE 352
             AGA+GSPQLL+LSGIGP  HL    I P ++D   VG+GM DNP  A  + +      P 
Sbjct:   277 AGAIGSPQLLMLSGIGPAAHLAAHGIKPLVLDHPMVGQGMGDNPMNAIFIPS------PT 330

Query:   353 PPEV-VAGVLPISSNASRMPIAAKLAFPIS 381
             P EV +  V+ I+   S +  A+ + F  S
Sbjct:   331 PVEVSLIQVVGITKFESYIEGASGVIFSYS 360

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0008812 "choline dehydrogenase activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA

GO:0016832 "aldehyde-lyase activity" evidence=ISS

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0048441 "petal development" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

TAIR|locus:2034705 AT1G12570 [Arabidopsis thaliana (taxid:3702)]

 Score = 701 (251.8 bits), Expect = 1.0e-103, Sum P(3) = 1.0e-103
 Identities = 145/289 (50%), Positives = 186/289 (64%)

Query:    54 FDYIVVGGGTTGCPLAATLSDNFSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEYTSVA 113
             +DYI++GGGT GCPLAATLS N SVLL+ERG SP+ NP +T    FG +L    E +S +
Sbjct:    46 YDYIIIGGGTAGCPLAATLSQNASVLLLERGDSPYNNPNITRLSAFGAALSDLSE-SSPS 104

Query:   114 QSFISTDGVQNHRGRVLGGSSAINGGFYSRAREDFVKKAGWDEELVKKAYEWVESKVVFP 173
             Q F+S DGV N R RVLGG SA+N GFY+RA   +V+  GWD  L  ++Y+WVE+KV F 
Sbjct:   105 QRFVSEDGVINARARVLGGGSALNAGFYTRAGTKYVRNMGWDGALANESYQWVEAKVAFQ 164

Query:   174 PELTPWQSVVEFGLLEAGILPYNGYSLEHIEGTKIGGTAFDQCGKRHTSADLLEAGNPKX 233
             P +  WQ+ V  GLLEAGI+P NG++ +HI GTK GGT FD+ G RHT+ADLLE  +PK 
Sbjct:   165 PPMGRWQTAVRDGLLEAGIVPNNGFTYDHINGTKFGGTIFDRNGNRHTAADLLEYADPKG 224

Query:   234 XXXXXXXXXXXIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILS 293
                        I+F   G   +  A+G+ +    G +   H AYL K G  S   ++ILS
Sbjct:   225 ITVLLHATVHRILFRTRG-TTKPIANGVVYRDRTGQA---HRAYL-KEGALS---EIILS 276

Query:   294 AGALGSPQLLLLSGIGPHDHLKDLNIPTIVDLQEVGEGMQDNPCIAKLV 342
             AG LGSPQLL+LSG+GP   L+  NI  ++D   VG+GM DNP  A  V
Sbjct:   277 AGTLGSPQLLMLSGVGPSAQLQAQNITVVMDQPHVGQGMYDNPMNAVFV 325

GO:0005576 "extracellular region" evidence=ISM

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0008812 "choline dehydrogenase activity" evidence=IEA

GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA

GO:0016832 "aldehyde-lyase activity" evidence=ISS

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2032627 HTH "HOTHEAD" [Arabidopsis thaliana (taxid:3702)]

 Score = 744 (267.0 bits), Expect = 5.3e-100, Sum P(2) = 5.3e-100
 Identities = 168/378 (44%), Positives = 230/378 (60%)

Query:    53 SFDYIVVGGGTTGCPLAATLSDNFSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEYTSV 112
             S+DYIV+GGGT GCPLAATLS NFSVL++ERGG PF N  V+  R F   L      +S 
Sbjct:    62 SYDYIVIGGGTAGCPLAATLSQNFSVLVLERGGVPFTNANVSFLRNFHIGLADISA-SSA 120

Query:   113 AQSFISTDGVQNHRGRVLGGSSAINGGFYSRAREDFVKKAGWDEELVKKAYEWVESKVVF 172
             +Q+F+STDGV N R RVLGG S IN GFYSRA   FVK+AGWD +LVK++Y WVE ++V 
Sbjct:   121 SQAFVSTDGVYNARARVLGGGSCINAGFYSRADAAFVKRAGWDPKLVKESYPWVEREIVH 180

Query:   173 PPELTPWQSVVEFGLLEAGILPYNGYSLEHIEGTKIGGTAFDQCGKRHTSADLLEAGNPK 232
              P+LT WQ  +   LLE G+ P+NG++ +H+ GTKIGGT FD+ G+RHT+A+LL   NP+
Sbjct:   181 QPKLTLWQKALRDSLLEVGVRPFNGFTYDHVSGTKIGGTIFDRFGRRHTAAELLAYANPQ 240

Query:   233 XXXXXXXXXXXXIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYL-NKPGNSSTWGDVI 291
                         I+F  +G     R  G+ F   D   N  H+A L N+ G+     +VI
Sbjct:   241 KLRVLIYATVQKIVFDTSG--TRPRVTGVIF--KDEKGNQ-HQALLSNRKGS-----EVI 290

Query:   292 LSAGALGSPQLLLLSGIGPHDHLKDLNIPTIVDLQEVGEGMQDNPCIAKLVDTM-P-QKR 349
             LS+GA+GSPQ+L+LSGIGP   L+ L IP +++ + VG+GM DNP    LV +  P ++ 
Sbjct:   291 LSSGAIGSPQMLMLSGIGPKKELQRLKIPVVLENEHVGKGMADNPMNTILVPSKAPIEQS 350

Query:   350 LPEPPEVVA-GV-LPISSNASRMPIAAKLAFPISKGKLELDSTDP--RQNPSIKFNYLAK 405
             L +   +   GV +  S+   + P +    + I   K EL ST P  ++ P     Y+ +
Sbjct:   351 LIQTVGITKMGVYVEASTGFGQSPESIHTHYGIMSNKNELFSTIPAKQRRPEATQAYITR 410

Query:   406 EK-DLHECVKMVQLLDKV 422
              K  LHE      +L+K+
Sbjct:   411 NKYQLHEAFNGSFILEKL 428

GO:0005576 "extracellular region" evidence=ISM;ISS

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0008812 "choline dehydrogenase activity" evidence=IEA

GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA

GO:0016832 "aldehyde-lyase activity" evidence=ISS

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA;ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0007267 "cell-cell signaling" evidence=IMP

GO:0046593 "mandelonitrile lyase activity" evidence=ISS

GO:0009553 "embryo sac development" evidence=IMP

GO:0010430 "fatty acid omega-oxidation" evidence=IMP

TAIR|locus:2173053 AT5G51930 [Arabidopsis thaliana (taxid:3702)]

 Score = 666 (239.5 bits), Expect = 1.4e-97, Sum P(2) = 1.4e-97
 Identities = 145/285 (50%), Positives = 185/285 (64%)

Query:    53 SFDYIVVGGGTTGCPLAATLSDNFSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEYTSV 112
             SFDYI++GGGT GC LAATLS N SVL++ERGGSP+ NP  TD      +LL      S 
Sbjct:    72 SFDYIIIGGGTAGCALAATLSQNASVLVLERGGSPYENPTATDMGNSVNTLLNNTP-NSW 130

Query:   113 AQSFISTDGVQNHRGRVLGGSSAINGGFYSRAREDFVKKAGWDEELVKKAYEWVESKVVF 172
             +Q FIS DGV N R RVLGG S INGGFYSRA  D+V++A W+ E V+ AYEWVE K+VF
Sbjct:   131 SQLFISEDGVYNTRPRVLGGGSVINGGFYSRAGNDYVEEAEWEMEEVEAAYEWVEKKLVF 190

Query:   173 PPELTPWQSVVEFGLLEAGILPYNGYSLEHIEGTKIGGTAFDQCGKRHTSADLLEAGNPK 232
              P++  WQ   + GLLEAG  P NG++ +HI GTKIGGT FD+ G RHT+A+LLE  NP 
Sbjct:   191 EPQVIEWQKAFKDGLLEAGESPDNGFTYDHIYGTKIGGTIFDRAGHRHTAANLLEYANPN 250

Query:   233 XXXXXXXXXXXXIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVIL 292
                         ++F+       + A+ + F  ++G     H+A L    N +T  +VIL
Sbjct:   251 RIVVYLHASVHKVLFT-------TEAYEVLFEDANGV---FHKANL---ANKAT-NEVIL 296

Query:   293 SAGALGSPQLLLLSGIGPHDHLKDLNI-PTIVDLQEVGEGMQDNP 336
             SAGALGSPQLL+LSG+GP  HL+   + P ++D   VG+GM DNP
Sbjct:   297 SAGALGSPQLLMLSGVGPAVHLEAHGVNPLVLDQPMVGQGMADNP 341

GO:0005576 "extracellular region" evidence=ISM

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0008812 "choline dehydrogenase activity" evidence=IEA

GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA

GO:0016832 "aldehyde-lyase activity" evidence=ISS

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2032642 AT1G73050 [Arabidopsis thaliana (taxid:3702)]

 Score = 653 (234.9 bits), Expect = 1.3e-96, Sum P(2) = 1.3e-96
 Identities = 137/296 (46%), Positives = 179/296 (60%)

Query:    44 SDVKEVAGKSF-DYIVVGGGTTGCPLAATLSDNFSVLLVERGGSPFGNPLVTDKRFFGFS 102
             S+  + A + + DYI+VGGGT GCPLAATLS +F VLL+ERGG P+  P V     F  +
Sbjct:    43 SNATDFASEDYYDYIIVGGGTAGCPLAATLSQSFRVLLLERGGVPYNRPNVMSHDGFLTT 102

Query:   103 LLQTDEYTSVAQSFISTDGVQNHRGRVLGGSSAINGGFYSRAREDFVKKAG--WDEELVK 160
             L   + + S AQSFIS +GV N RGRVLGGSSAIN GFYSRA + F + +G  WD   V 
Sbjct:   103 LTDVNNFDSPAQSFISEEGVPNARGRVLGGSSAINAGFYSRADKQFFENSGLVWDLSSVN 162

Query:   161 KAYEWVESKVVFPPELTPWQSVVEFGLLEAGILPYNGYSLEHIEGTKIGGTAFDQCGKRH 220
             ++YEWVE  +VF P+L  WQ+ +   LLE G+ P+NG++LEH  GTKIGG+ FD+ G+RH
Sbjct:   163 QSYEWVERAIVFRPQLRTWQTAIRDALLEVGVHPFNGFTLEHKVGTKIGGSTFDRTGRRH 222

Query:   221 TSADLLEAGNPKXXXXXXXXXXXXIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNK 280
             +SADLL                  ++ +++   + S    I  +  D      H A +  
Sbjct:   223 SSADLLRYARSSNIRVAVYATVERVLLASSPSVSGSNVSAIGVVYRD-QLGRFHHALIRD 281

Query:   281 PGNSSTWGDVILSAGALGSPQLLLLSGIGPHDHLKDLNIPTIVDLQEVGEGMQDNP 336
              G      +VILSAGALGSPQLL LSGIGP  +L    IP  +D   VG+ + DNP
Sbjct:   282 RG------EVILSAGALGSPQLLFLSGIGPRSYLSTWGIPVALDQPHVGDFVYDNP 331

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0008812 "choline dehydrogenase activity" evidence=IEA

GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006952 "defense response" evidence=TAS

GO:0046202 "cyanide biosynthetic process" evidence=TAS

TAIR|locus:2078441 AT3G56060 [Arabidopsis thaliana (taxid:3702)]

 Score = 719 (258.2 bits), Expect = 4.8e-71, P = 4.8e-71
 Identities = 167/377 (44%), Positives = 216/377 (57%)

Query:    54 FDYIVVGGGTTGCPLAATLSDNFSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEYTSVA 113
             FDYI++GGGT GC LAATLS N +VL++ERGGSP+ +P  TD   F  +LL      S +
Sbjct:    46 FDYIIIGGGTAGCALAATLSQNATVLVLERGGSPYDDPAATDIGNFANTLLNITP-NSWS 104

Query:   114 QSFISTDGVQNHRGRVLGGSSAINGGFYSRAREDFVKKAGWDEELVKKAYEWVESKVVFP 173
             Q FIS DGV N R RVLGG + IN GFYSRA EDFV +AGW+ + V+ AYEWVE KVVF 
Sbjct:   105 QLFISEDGVFNSRARVLGGGTVINAGFYSRAEEDFVAEAGWERDEVEAAYEWVEKKVVFE 164

Query:   174 PELTPWQSVVEFGLLEAGILPYNGYSLEHIEGTKIGGTAFDQCGKRHTSADLLEAGNPKX 233
             P +  WQS    GLLEAG+ PYNG++ EHI GTK GGT FD+ G RHT+A+LLE  NP  
Sbjct:   165 PPVNKWQSAFRDGLLEAGVTPYNGFTYEHIVGTKFGGTIFDRDGHRHTAANLLEYANPNM 224

Query:   234 XXXXXXXXXXXIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILS 293
                        I+F+  G     +A+G+ F+ ++G S   ++A L      ST  +VILS
Sbjct:   225 IVVYLHASVHKILFTIKGN-QRPKAYGVIFLDANGVS---YKAELAT--QDSTMSEVILS 278

Query:   294 AGALGSPQLLLLSGIGPHDHLKDLNI-PTIVDLQEVGEGMQDNPCIAKLVDTMPQKRLPE 352
             AGA+ SPQLL+LSG+GP  HL    + P IVD   VG+GM DNP     + +      PE
Sbjct:   279 AGAIASPQLLMLSGVGPAAHLAAYRVNPVIVDQPMVGQGMGDNPMNPVFIPS------PE 332

Query:   353 PPEV----VAGVLPISS---NASRMPIAAKLAFPISKGKLELDSTDPRQNPSIKFNYLAK 405
             P EV      G+    S     S + ++  L      G L L         SI   + + 
Sbjct:   333 PVEVSLVQAVGITKFGSYIEGGSALSLSISLTRSFFDGVLNLLKKTKLPTQSISKFFKSL 392

Query:   406 EKDLHECVKMVQLLDKV 422
             +  L+   K   ++ KV
Sbjct:   393 DLTLNVTTKAGVIIQKV 409

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0008812 "choline dehydrogenase activity" evidence=IEA

GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA

GO:0016832 "aldehyde-lyase activity" evidence=ISS

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

UNIPROTKB|Q945K2 MDL2 "(R)-mandelonitrile lyase 2" [Prunus dulcis (taxid:3755)]

 Score = 662 (238.1 bits), Expect = 5.2e-65, P = 5.2e-65
 Identities = 160/420 (38%), Positives = 238/420 (56%)

Query:    41 YMTSDVKEVAGKSFDYIVVGGGTTGCPLAATLSDNFSVLLVERGGSPFGNPLVTDKRFFG 100
             Y  +D+ E+ G S+DY++VGGGT+GCPLAATLS+ + VL++ERG  P   P V     F 
Sbjct:    43 YDATDL-ELEG-SYDYVIVGGGTSGCPLAATLSEKYKVLVLERGSLPTAYPNVLTADGFV 100

Query:   101 FSLLQTDEYTSVAQSFISTDGVQNHRGRVLGGSSAINGGFYSRAREDFVKKAG--WDEEL 158
             ++L Q D+  +  + F+S DG+ N RGRVLGG+S IN G Y+RA       +G  WD +L
Sbjct:   101 YNLQQEDDGKTPVERFVSEDGIDNVRGRVLGGTSIINAGVYARANTSIYSASGVDWDMDL 160

Query:   159 VKKAYEWVESKVVFPPELTPWQSVVEFGLLEAGILPYNGYSLEHIEGTKIGGTAFDQCGK 218
             V + YEWVE  +V+ P    WQSV +   LEAG+ P +G+SL+H EGT+I G+ FD  G 
Sbjct:   161 VNQTYEWVEDTIVYKPNSQSWQSVTKTAFLEAGVHPNHGFSLDHEEGTRITGSTFDNKGT 220

Query:   219 RHTSADLLEAGNPKXXXXXXXXXXXXIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYL 278
             RH + +LL  GN              IIFSN   A    A G+ +  S+G+    H+A++
Sbjct:   221 RHAADELLNKGNSNNLRVGVHASVEKIIFSN---APGLTATGVIYRDSNGTP---HQAFV 274

Query:   279 NKPGNSSTWGDVILSAGALGSPQLLLLSGIGPHDHLKDLNIPTIVDLQEVGEGMQDNPCI 338
                G      +VI+SAG +G+PQLLLLSG+GP  +L  LNIP ++    VG+ + DNP  
Sbjct:   275 RSKG------EVIVSAGTIGTPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQFLHDNP-- 326

Query:   339 AKLVDTMPQKRLPEPPEV-VAGV-----------LPISS-------NASR-MP------I 372
                ++ +P   + EP  V V G+           LP ++       +AS  +P       
Sbjct:   327 RNFINILPPNPI-EPTIVTVLGISNDFYQCSFSSLPFTTPPFGFFPSASYPLPNSTFAHF 385

Query:   373 AAKLAFPISKGKLEL-DSTDPRQNPSIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSF 431
             A+K+A P+S G L L  S++ R +P++KFNY +   DL  CV  ++ + ++  + ++  +
Sbjct:   386 ASKVAGPLSYGSLTLKSSSNVRVSPNVKFNYYSNLTDLSHCVSGMKKIGELLSTDALKPY 445

GO:0046593 "mandelonitrile lyase activity" evidence=TAS

GO:0050660 "flavin adenine dinucleotide binding" evidence=IDA

GO:0050898 "nitrile metabolic process" evidence=TAS

TIGR_CMR|CPS_1334 CPS_1334 "choline dehydrogenase" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 180 (68.4 bits), Expect = 1.7e-27, Sum P(3) = 1.7e-27
 Identities = 45/136 (33%), Positives = 72/136 (52%)

Query:   379 PISKGKLELDSTDPRQNPSIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSFLGIKPQE 438
             P S+G ++  S DP+ +P I+FNYL  E+D       V+L  ++    ++  + G + Q 
Sbjct:   388 PKSRGSIKAISNDPKAHPQIRFNYLEHEEDREGFRACVRLTREIINQSALDEYRGEEIQP 447

Query:   439 KLMSNSDE-LRKLCKNNVRTFYHYHGGCIVGS----VVDKDYRVYGVKGLRVIDGSTFQE 493
              +   SDE +    +  V + YH    C +G+    VVD + RV+G++GLRV+D S F  
Sbjct:   448 GINVQSDEEIDAFVRQFVESAYHPSCSCKMGTDELAVVDSETRVHGIEGLRVVDSSIFPT 507

Query:   494 SPGTNPMA-TVMMLGR 508
              P  N  A T+M+  R
Sbjct:   508 IPNGNLNAPTIMVAER 523

GO:0008812 "choline dehydrogenase activity" evidence=ISS

GO:0019285 "glycine betaine biosynthetic process from choline" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.X.1106.1 hypothetical protein (489 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	523
PLN02785	587	PLN02785, PLN02785, Protein HOTHEAD	1e-172
COG2303	542	COG2303, BetA, Choline dehydrogenase and related f	2e-54
TIGR03970	487	TIGR03970, Rv0697, dehydrogenase, Rv0697 family	1e-40
PRK02106	560	PRK02106, PRK02106, choline dehydrogenase; Validat	2e-32
pfam05199	139	pfam05199, GMC_oxred_C, GMC oxidoreductase	1e-31
TIGR01810	532	TIGR01810, betA, choline dehydrogenase	8e-26
PRK02106	560	PRK02106, PRK02106, choline dehydrogenase; Validat	2e-17
pfam00732	218	pfam00732, GMC_oxred_N, GMC oxidoreductase	2e-17
TIGR01810	532	TIGR01810, betA, choline dehydrogenase	6e-17
PTZ00367	567	PTZ00367, PTZ00367, squalene epoxidase; Provisiona	0.001
COG0644	396	COG0644, FixC, Dehydrogenases (flavoproteins) [Ene	0.003
PTZ00383	497	PTZ00383, PTZ00383, malate:quinone oxidoreductase;	0.004

>gnl|CDD|215420 PLN02785, PLN02785, Protein HOTHEAD

 Score =  498 bits (1283), Expect = e-172
 Identities = 248/597 (41%), Positives = 327/597 (54%), Gaps = 113/597 (18%)

Query: 15  AFSFFLLTLPLFSSSLPEGKGKEVPYYMT-------------SDVKEVAGKSFDYIVVGG 61
               FLL L L +SS  +GK    PY                S        ++DYIVVGG
Sbjct: 4   KLFLFLLLLCLPTSSSSQGKSHFTPYRYPFIDKASSFSSSSSSSSSSGGDSAYDYIVVGG 63

Query: 62  GTTGCPLAATLSDNFSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEYTSVAQSFISTDG 121
           GT GCPLAATLS NFSVLL+ERGG PFGN  V+    F   L  T   TS +Q+FISTDG
Sbjct: 64  GTAGCPLAATLSQNFSVLLLERGGVPFGNANVSFLENFHIGLADTSP-TSASQAFISTDG 122

Query: 122 VQNHRGRVLGGSSAINGGFYSRAREDFVKKAGWDEELVKKAYEWVESKVVFPPELTPWQS 181
           V N R RVLGG + IN GFYSRA   F++KAGWD +LV ++Y WVE ++V  P++ PWQ+
Sbjct: 123 VINARARVLGGGTCINAGFYSRASTRFIQKAGWDAKLVNESYPWVERQIVHWPKVAPWQA 182

Query: 182 VVEFGLLEAGILPYNGYSLEHIEGTKIGGTAFDQCGKRHTSADLLEAGNPKNLVVLLNAT 241
            +   LLE G+ P+NG++ +H+ GTK+GGT FD+ G+RHT+A+LL AGNP  L VLL+AT
Sbjct: 183 ALRDSLLEVGVSPFNGFTYDHVYGTKVGGTIFDEFGRRHTAAELLAAGNPNKLRVLLHAT 242

Query: 242 VNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQ 301
           V  I+F  +GK    RA G+ F   D + N  H+A+L+    S    ++ILSAGA+GSPQ
Sbjct: 243 VQKIVFDTSGK--RPRATGVIF--KDENGNQ-HQAFLSNNKGS----EIILSAGAIGSPQ 293

Query: 302 LLLLSGIGPHDHLKDLNIPTIVDLQEVGEGMQ-----------DNPCIAKLVDTM----- 345
           +LLLSGIGP   LK   IP ++  + VG+GM              P    L+ T+     
Sbjct: 294 MLLLSGIGPKKELKKHKIPVVLHNEHVGKGMADNPMNSIFVPSKAPVEQSLIQTVGITKM 353

Query: 346 -----------------------------------PQKRLPE------------PPEVVA 358
                                              P++R PE            P E   
Sbjct: 354 GVYIEASSGFGQSPDSIHCHHGIMSAEIGQLSTIPPKQRTPEAIQAYIHRKKNLPHEAFN 413

Query: 359 GVLPISSNASRMPIAAKLAFPISKGKLELDSTDPRQNPSIKFNYLAKEKDLHECVKMVQL 418
           G            I  K+A PIS G L L +T+   NPS+ FNY    +DL  CV  ++ 
Sbjct: 414 GGF----------ILEKIAGPISTGHLSLINTNVDDNPSVTFNYFKHPQDLQRCVYGIRT 463

Query: 419 LDKVTKSQSVSSFL--GIKPQEKLMS---------------NSDELRKLCKNNVRTFYHY 461
           ++K+ K+   ++F     +  EK+++               ++  L + CK+ V T +HY
Sbjct: 464 IEKIVKTNHFTNFTQCDKQTMEKVLNMSVKANINLIPKHTNDTKSLEQFCKDTVITIWHY 523

Query: 462 HGGCIVGSVVDKDYRVYGVKGLRVIDGSTFQESPGTNPMATVMMLGRYQGVKLVEER 518
           HGGC VG VVD++Y+V GV  LRVIDGSTF ESPGTNP ATVMM+GRY GVK++ ER
Sbjct: 524 HGGCHVGKVVDQNYKVLGVSRLRVIDGSTFDESPGTNPQATVMMMGRYMGVKILRER 580

Length = 587

>gnl|CDD|225186 COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

 Score =  191 bits (488), Expect = 2e-54
 Identities = 142/562 (25%), Positives = 206/562 (36%), Gaps = 135/562 (24%)

Query: 47  KEVAGKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPFGNPLVTDKRFF-----G 100
                  +DY++VG G+ G  LAA LSD   SVL++E GG         D+R        
Sbjct: 1   MSEMKMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGGP--------DRRPLIQMPAA 52

Query: 101 FSLLQTDEYTSVAQSFISTDGVQNH-----RGRVLGGSSAINGGFYSR-AREDFVKKA-- 152
           ++ L                 ++       RG+VLGGSS+ING  Y R   EDF   A  
Sbjct: 53  YAFLMNGPRYDWGFRTEPEPHLRGRELAWPRGKVLGGSSSINGMVYVRGHPEDFDAWAQE 112

Query: 153 ----GWDEELVKKAYEWVESKV------------------VFPPELTPW--QSVVEFGLL 188
               GW  + V   ++  E  +                  V PP       ++ +E G  
Sbjct: 113 SGAPGWPYDDVLPYFKRAEDLLGVGGQDLRTWHGGGGPLPVSPPRSPNPIARAFIEAGE- 171

Query: 189 EAGILP---YNGYSLEHIEGTKIGGTAFD--QC-GKRHTS--ADLLEAGNPKNLVVLLNA 240
           + G       NG   E       G   +    C G+R ++  A L  A    NL +L  A
Sbjct: 172 QLGFPTTPDPNGADQE-------GFGPYCVTICNGRRWSAARAYLKPALKRPNLTLLTGA 224

Query: 241 TVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSP 300
            V  I+   +      RA G+      G    +  A   +        +V+L+AGA+ SP
Sbjct: 225 RVRRILLEGD------RAVGVEV--EIGDGGTIETAVAAR--------EVVLAAGAINSP 268

Query: 301 QLLLLSGIGPHDHLKDLNIPTIVDLQEVGEGMQDNPCIA------------------KLV 342
           +LLLLSGIGP DHL +  I  +  L  VG+ +QD+  I                   KL 
Sbjct: 269 KLLLLSGIGPADHLLEHGIDVVGRLPGVGQNLQDHLEIYVAFEATEPTNDSVLSLFSKLG 328

Query: 343 DTMPQKRL-----PEPPEVVAGVL---PISSNASRMPIAAKLAF---------------- 378
               +  L             G +   P           A L                  
Sbjct: 329 IGADRYLLTRDGPGATNHFEGGFVRSGPAGEYPDGQYHFAPLPLAIRAAGAEHGFTLHVG 388

Query: 379 ---PISKGKLELDSTDPRQNPSIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSFLGIK 435
              P S+G + L S DP   P I  NYL+ E D       ++L  ++   Q        +
Sbjct: 389 PMRPKSRGSVTLRSPDPDNRPVIDPNYLSAEGDRAIFRAGIRLTREI-IGQPA--LDARR 445

Query: 436 PQEKL----MSNSDELRKLCKNNVRTFYHYHGGCIVG-----SVVDKDYRVYGVKGLRVI 486
             E      ++  +++    +   RT YH  G C +G      V D   RV+G++ LRV+
Sbjct: 446 KAELAPGPRVTTDEDISAAIRFLARTAYHPMGTCRMGSDPAAVVDDPYLRVHGLENLRVV 505

Query: 487 DGSTFQESPGTNPMATVMMLGR 508
           D S    S G NP  T++ L  
Sbjct: 506 DASVMPTSTGVNPNLTIIALAE 527

Length = 542

>gnl|CDD|234421 TIGR03970, Rv0697, dehydrogenase, Rv0697 family

 Score =  152 bits (386), Expect = 1e-40
 Identities = 142/519 (27%), Positives = 203/519 (39%), Gaps = 107/519 (20%)

Query: 55  DYIVVGGGTTGCPLAATLSDNFS--VLLVERGGSPFGNPL-----VTDKRFFGFSLLQTD 107
           D +VVGGG+ GC +AA LS++ S  V ++E G     +P      +TD        L   
Sbjct: 2   DVLVVGGGSAGCVVAARLSEDPSCTVTVLEAGPGYR-DPSRLPAQLTDGL-----RLPIG 55

Query: 108 EYTSVAQSFIS--TDGVQNH----RGRVLGGSSAINGGFYSRARE-DFVK--KAGWDEEL 158
             + V   +    TDG +      RGRVLGGS A+NGG++ RA   DF      GW  + 
Sbjct: 56  PASPVVWRYGVELTDGPRRASAIVRGRVLGGSGAVNGGYFCRALPADFDAWPIPGWSWDD 115

Query: 159 VKKAYEWVESKVVFP---------------PELTPWQSVVEFGLLEAG---ILPYNGYSL 200
           V   +  +E+ + F                 EL    +      L AG   I   NG   
Sbjct: 116 VLPHFRAIETDLDFDGPLHGTAGPIPVRRTAELDGISAAFVAAALGAGFGWIADLNGSGP 175

Query: 201 EHIEGTKIGGTAFDQCGKRHTS---ADLLEAGNPKNLVVLLNATVNNIIFSNNGKANESR 257
           +   G  +G    +  G R  S   A LL A    NL V  +  V  I+FS        R
Sbjct: 176 DAPTG--VGAVPLNVDGGRRVSTAVAYLLPALKRPNLTVEADTRVVRILFSGT------R 227

Query: 258 AHGIRFIKSDGSSNHMHEAYLNKPGNSST-WGD-VILSAGALGSPQLLLLSGIGPHDHLK 315
           A G+  +                 G   T   D V+L AGA+ S  LLLLSGIGP + L+
Sbjct: 228 AVGVEVLG---------------DGGPRTLRADRVVLCAGAVESAHLLLLSGIGPAEQLR 272

Query: 316 DLNIPTIVDLQEVGEGMQDNPCIAKLVDTMPQKRLPEPPEVVAGVL--------PISSNA 367
              I  ++DL  VG    D+P         P    P+   V+  VL        P ++  
Sbjct: 273 AAGIAVVLDL-PVGSDFVDHPEWVLPYRWRPTHDRPDTSPVLETVLNTADIEIRPYTAGF 331

Query: 368 SRMP---------IAAKLAFPISKGKLELDSTDPRQNPSIKFNYLAKEKD---LHECVKM 415
           + +          +   L  P S+G++ L S DP   P I+  Y +   D   L     +
Sbjct: 332 TALVPGSPRDDPHLGVALMRPHSRGRIRLASADPADPPRIEHRYDSSAADRAALRAGAAL 391

Query: 416 V-QLLDKVTKSQSVSSFLGIKPQEKLMSNSDELRKLCKNNVRTFYHYHGGCIVG------ 468
             +LL        +   +       +++            + T  H  G C +G      
Sbjct: 392 AHELLGSPELGPLLEPAVREGEASWVLA-----------RLATSQHLCGSCRMGGRDDPG 440

Query: 469 SVVDKDYRVYGVKGLRVIDGSTFQESPGTNPMATVMMLG 507
           +VVD   RV GV+GL V+DGS     P   P AT +M+ 
Sbjct: 441 AVVDARCRVRGVEGLWVVDGSILPVIPSRGPHATAVMVA 479

This model describes a set of dehydrogenases belonging to the glucose-methanol-choline oxidoreductase (GMC oxidoreductase) family. Members of the present family are restricted to Actinobacterial genome contexts containing also members of families TIGR03962 and TIGR03969 (the mycofactocin system), and are proposed to be uniform in function. Length = 487

>gnl|CDD|235000 PRK02106, PRK02106, choline dehydrogenase; Validated

 Score =  130 bits (329), Expect = 2e-32
 Identities = 106/333 (31%), Positives = 148/333 (44%), Gaps = 88/333 (26%)

Query: 52  KSFDYIVVGGGTTGCPLAATLSD--NFSVLLVERGGSPFGNPLVTDKRF---------FG 100
             +DYI++G G+ GC LA  LS+  + SVLL+E GG         D R+           
Sbjct: 4   MEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGP--------DYRWDFFIQMPAALA 55

Query: 101 FSLLQTDEYT----SVAQSFISTDGVQNH--RGRVLGGSSAINGGFYSR--AREDFVKKA 152
           F  LQ   Y     +  +  +  +  +    RG+VLGGSS+ING  Y R  A  D+   A
Sbjct: 56  F-PLQGKRYNWAYETEPEPHM--NNRRMECPRGKVLGGSSSINGMVYIRGNAM-DYDNWA 111

Query: 153 ------GWDEELV----KKAYEWVESKVVF-----PPELT-------P-WQSVVEFGLLE 189
                 GW         KKA      +  +     P  +T       P +Q+ VE G+ +
Sbjct: 112 ELPGLEGWSYADCLPYFKKAETRDGGEDDYRGGDGPLSVTRGKPGTNPLFQAFVEAGV-Q 170

Query: 190 AGILP---YNGYSLEHIEGTKIGGTAFDQC---GKRHTSAD--LLEAGNPKNLVVLLNAT 241
           AG       NGY  E       G    D+    G+R ++A   L  A    NL ++ +A 
Sbjct: 171 AGYPRTDDLNGYQQE-------GFGPMDRTVTNGRRWSAARAYLDPALKRPNLTIVTHAL 223

Query: 242 VNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQ 301
            + I+F         RA G+ + +  G       A   +        +VILSAGA+ SPQ
Sbjct: 224 TDRILFEGK------RAVGVEYERGGG----RETARARR--------EVILSAGAINSPQ 265

Query: 302 LLLLSGIGPHDHLKDLNIPTIVDLQEVGEGMQD 334
           LL LSGIGP +HLK+L IP + DL  VGE +QD
Sbjct: 266 LLQLSGIGPAEHLKELGIPVVHDLPGVGENLQD 298

Length = 560

>gnl|CDD|218493 pfam05199, GMC_oxred_C, GMC oxidoreductase

 Score =  118 bits (297), Expect = 1e-31
 Identities = 44/136 (32%), Positives = 63/136 (46%), Gaps = 7/136 (5%)

Query: 379 PISKGKLELDSTDPRQNPSIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSFLGIKPQE 438
           P S+G++ L S+DP   P I  NYL+   DL      ++L  ++  +  V    G     
Sbjct: 1   PRSRGRVTLSSSDPLGLPVIDPNYLSDPADLAALRAALRLARRILAAALVELTPGPVEVV 60

Query: 439 KLMSN--SDELRKLCKNNVRTFYHYHGGCIVG-----SVVDKDYRVYGVKGLRVIDGSTF 491
              +    DE+ +  +    T +H  G C +G      VVD D RV+GV  LRV+D S F
Sbjct: 61  PGAAEASDDEILEYIRAAAVTSWHPMGTCRMGADPDDGVVDPDLRVHGVDNLRVVDASVF 120

Query: 492 QESPGTNPMATVMMLG 507
             SP  NP  T+  L 
Sbjct: 121 PSSPSGNPTLTIYALA 136

This domain found associated with pfam00732. Length = 139

>gnl|CDD|233581 TIGR01810, betA, choline dehydrogenase

 Score =  110 bits (276), Expect = 8e-26
 Identities = 101/318 (31%), Positives = 143/318 (44%), Gaps = 63/318 (19%)

Query: 55  DYIVVGGGTTGCPLAATLSD--NFSVLLVERGGSPFG-NPLVTDKRFFGFSL---LQTDE 108
           DYI++GGG+ G  LA  LS+  + SVL++E GGS +  + L+       +          
Sbjct: 1   DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGSDYPWDLLIQMPAALAYPAGNKRYNWI 60

Query: 109 YTSVAQSFISTDGVQNHRGRVLGGSSAINGGFYSRAR-EDFVKKA------GWDEELVKK 161
           Y +  +  ++   V + RG+VLGGSS+ING  Y R    D+ K A       WD      
Sbjct: 61  YETEPEPHMNNRRVGHARGKVLGGSSSINGMIYQRGNPMDYEKWAKPEGMESWDYADCLP 120

Query: 162 AYEWVES---------------KVVFPPELTP-WQSVVEFGLLEAG---ILPYNGYSLEH 202
            Y+ +E+               KV   P   P +Q+ +E G+ EAG       NG+  E 
Sbjct: 121 YYKRLETTFGGEKPYRGHDGPIKVRRGPADNPLFQAFIEAGV-EAGYNKTPDVNGFRQE- 178

Query: 203 IEGTKIGGTAFDQC---GKRHTSAD--LLEAGNPKNLVVLLNATVNNIIFSNNGKANESR 257
                 G    D     G+R ++A   L  A    NL V   A V  I F  N      R
Sbjct: 179 ------GFGPMDSTVHNGRRVSAARAYLHPAMKRPNLEVQTRAFVTKINFEGN------R 226

Query: 258 AHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSGIGPHDHLKDL 317
           A G+ F K              +  ++    +VILSAGA+ SPQLL LSGIG  +HL++L
Sbjct: 227 ATGVEFKKGG------------RKEHTEANKEVILSAGAINSPQLLQLSGIGDAEHLREL 274

Query: 318 NIPTIVDLQEVGEGMQDN 335
            I   + L  VGE +QD+
Sbjct: 275 GIEPRIHLPGVGENLQDH 292

Choline dehydrogenase catalyzes the conversion of exogenously supplied choline into the intermediate glycine betaine aldehyde, as part of a two-step oxidative reaction leading to the formation of osmoprotectant betaine. This enzymatic system can be found in both gram-positive and gram-negative bacteria. As in Escherichia coli , Staphylococcus xylosus , and Sinorhizobium meliloti, this enzyme is found associated in a transciptionally co-induced gene cluster with betaine aldehyde dehydrogenase, the second catalytic enzyme in this reaction. Other gram-positive organisms have been shown to employ a different enzymatic system, utlizing a soluable choline oxidase or type III alcohol dehydrogenase instead of choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified [Cellular processes, Adaptations to atypical conditions]. Length = 532

>gnl|CDD|235000 PRK02106, PRK02106, choline dehydrogenase; Validated

 Score = 84.9 bits (211), Expect = 2e-17
 Identities = 42/135 (31%), Positives = 71/135 (52%), Gaps = 7/135 (5%)

Query: 379 PISKGKLELDSTDPRQNPSIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSFLG--IKP 436
             S+G ++L S DPR +PSI FNY++ E+D  E    ++L  ++    ++  + G  I P
Sbjct: 391 SPSRGSVKLKSADPRAHPSILFNYMSTEQDWREFRDAIRLTREIMAQPALDPYRGREISP 450

Query: 437 QEKLMSNSDELRKLCKNNVRTFYHYHGGCIVG----SVVDKDYRVYGVKGLRVIDGSTFQ 492
              + ++ +E+    + +  T YH    C +G    +VVD + RV+GV+GLRV+D S   
Sbjct: 451 GADVQTD-EEIDAFVREHAETAYHPSCTCKMGTDPMAVVDPEGRVHGVEGLRVVDASIMP 509

Query: 493 ESPGTNPMATVMMLG 507
                N  A  +M+ 
Sbjct: 510 TITNGNLNAPTIMIA 524

Length = 560

>gnl|CDD|216089 pfam00732, GMC_oxred_N, GMC oxidoreductase

 Score = 80.8 bits (200), Expect = 2e-17
 Identities = 54/229 (23%), Positives = 81/229 (35%), Gaps = 50/229 (21%)

Query: 126 RGRVLGGSSAINGGFYSRA--------REDFVKKAGWDEELVKKAYEWVESKV---VFPP 174
            G  +GG S++N     R           +F    GW  +      + VE  +       
Sbjct: 23  AGSTVGGGSSVNWSACIRTPAAVLDEWASEF-GLEGWGYDDYLPYMDKVEGPLGVTTKGI 81

Query: 175 ELTPWQSVVEFGLLEAGI----LPYNGYSLEHIEGTKIGGTAFDQCGKRHTSAD--LLEA 228
           E +P    +     E G     +P N  +  H  G    G      G + ++A   L  A
Sbjct: 82  EESPLNQALLKAAEELGYPVEAVPRN-SNGCHYCGFCGLGCPT---GAKQSTARTWLRPA 137

Query: 229 GNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWG 288
              +NL +L  A    II    G     RA G+     DG           K        
Sbjct: 138 LE-RNLRILTGAKAEKIIILGRGG----RAVGVEA--RDGGGGIKRLITAAK-------- 182

Query: 289 DVILSAGALGSPQLLLLSGIGPHDHLKDLNIPTIVDLQEVGEGMQDNPC 337
           +V+++AGAL +P LLL SG+G + H              VG+ +Q +P 
Sbjct: 183 EVVVAAGALNTPPLLLRSGLGKNPH-------------PVGKNLQLHPV 218

This family of proteins bind FAD as a cofactor. Length = 218

>gnl|CDD|233581 TIGR01810, betA, choline dehydrogenase

 Score = 83.4 bits (206), Expect = 6e-17
 Identities = 41/135 (30%), Positives = 76/135 (56%), Gaps = 9/135 (6%)

Query: 381 SKGKLELDSTDPRQNPSIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSFLG--IKPQE 438
           S+G +++ S DP + P I FNY++ E+D  E  + +++  ++ K +++  + G  I P  
Sbjct: 386 SRGHVKIKSKDPFEKPEIVFNYMSHEEDWREFREAIRVTREILKQKALDPYRGGEISPGP 445

Query: 439 KLMSNSDELRKLCKNNVRTFYHYHGGCIVG------SVVDKDYRVYGVKGLRVIDGSTFQ 492
           ++ ++ +E+ +  + +  T  H  G C +G      SVVD + RV+G++GLRV+D S   
Sbjct: 446 EVQTD-EEIDEFVRRHGETALHPCGTCKMGPASDEMSVVDPETRVHGMEGLRVVDASIMP 504

Query: 493 ESPGTNPMATVMMLG 507
                N  A V+M+G
Sbjct: 505 RITNGNLNAPVIMMG 519

Choline dehydrogenase catalyzes the conversion of exogenously supplied choline into the intermediate glycine betaine aldehyde, as part of a two-step oxidative reaction leading to the formation of osmoprotectant betaine. This enzymatic system can be found in both gram-positive and gram-negative bacteria. As in Escherichia coli , Staphylococcus xylosus , and Sinorhizobium meliloti, this enzyme is found associated in a transciptionally co-induced gene cluster with betaine aldehyde dehydrogenase, the second catalytic enzyme in this reaction. Other gram-positive organisms have been shown to employ a different enzymatic system, utlizing a soluable choline oxidase or type III alcohol dehydrogenase instead of choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified [Cellular processes, Adaptations to atypical conditions]. Length = 532

>gnl|CDD|240384 PTZ00367, PTZ00367, squalene epoxidase; Provisional

 Score = 41.0 bits (96), Expect = 0.001
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 48 EVAGKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVER 83
                +D I+VGG   G  LA  LS     VL++ER
Sbjct: 28 ARTNYDYDVIIVGGSIAGPVLAKALSKQGRKVLMLER 64

Length = 567

>gnl|CDD|223717 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion]

 Score = 39.7 bits (93), Expect = 0.003
 Identities = 23/119 (19%), Positives = 41/119 (34%), Gaps = 19/119 (15%)

Query: 53  SFDYIVVGGGTTGCPLAATLSDN-FSVLLVERG---GSPFGNPLVTDKRFF--GFSLLQT 106
            +D ++VG G  G   A  L+     VL++E+G   G+          R           
Sbjct: 3   EYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDE 62

Query: 107 DEYTSVAQSFISTDGVQNHRGRVLGGSSAINGGFYSRAREDFVKKAGWDEELVKKAYEW 165
           +    V  + I   G +      +G    +      RA+        +D+ L ++A E 
Sbjct: 63  EIERKVTGARIYFPGEKVAIEVPVGEGYIV-----DRAK--------FDKWLAERAEEA 108

Length = 396

>gnl|CDD|240393 PTZ00383, PTZ00383, malate:quinone oxidoreductase; Provisional

 Score = 39.3 bits (92), Expect = 0.004
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 3/44 (6%)

Query: 43 TSDVKEVAGKSFDYIVVGGGTTGCPLAATLS---DNFSVLLVER 83
          TS    +    +D ++VGGG TG  L  TLS   +   + L+ER
Sbjct: 35 TSSGNRLGSDVYDVVIVGGGVTGTALFYTLSKFTNLKKIALIER 78

Length = 497

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	523
PLN02785	587	Protein HOTHEAD	100.0
KOG1238	623	consensus Glucose dehydrogenase/choline dehydrogen	100.0
PRK02106	560	choline dehydrogenase; Validated	100.0
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	100.0
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	100.0
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	100.0
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	100.0
PF05199	144	GMC_oxred_C: GMC oxidoreductase; InterPro: IPR0078	99.97
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	99.73
PRK07121	492	hypothetical protein; Validated	99.66
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.65
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.63
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	99.62
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.59
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	99.57
PRK08274	466	tricarballylate dehydrogenase; Validated	99.55
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	99.53
PRK06175	433	L-aspartate oxidase; Provisional	99.52
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	99.5
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	99.5
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.5
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	99.5
PRK12839	572	hypothetical protein; Provisional	99.49
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	99.48
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	99.47
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	99.47
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	99.47
PRK07395	553	L-aspartate oxidase; Provisional	99.47
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	99.46
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	99.46
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	99.45
PRK12842	574	putative succinate dehydrogenase; Reviewed	99.45
PLN02815	594	L-aspartate oxidase	99.45
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	99.45
COG2081	408	Predicted flavoproteins [General function predicti	99.44
PRK07804	541	L-aspartate oxidase; Provisional	99.43
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	99.43
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	99.43
PRK09077	536	L-aspartate oxidase; Provisional	99.42
PRK08071	510	L-aspartate oxidase; Provisional	99.41
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	99.41
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	99.4
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	99.39
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	99.39
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	99.38
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	99.38
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	99.38
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	99.37
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	99.36
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	99.35
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	99.35
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	99.34
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	99.28
PRK07512	513	L-aspartate oxidase; Provisional	99.28
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	99.27
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	99.27
PRK08275	554	putative oxidoreductase; Provisional	99.25
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	99.25
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	99.22
PLN02464	627	glycerol-3-phosphate dehydrogenase	99.2
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	99.19
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	99.18
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	99.17
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.15
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	99.14
COG0579	429	Predicted dehydrogenase [General function predicti	99.14
PTZ00383	497	malate:quinone oxidoreductase; Provisional	99.13
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	99.13
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	99.11
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	99.11
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	99.11
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	99.1
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	99.1
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	99.1
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	99.08
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	99.08
COG3573	552	Predicted oxidoreductase [General function predict	99.07
PRK08401	466	L-aspartate oxidase; Provisional	99.07
PLN02661	357	Putative thiazole synthesis	99.06
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	99.06
KOG2404	477	consensus Fumarate reductase, flavoprotein subunit	99.03
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	99.02
PRK05257	494	malate:quinone oxidoreductase; Validated	99.01
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	98.99
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	98.98
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	98.98
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	98.96
KOG1298	509	consensus Squalene monooxygenase [Lipid transport	98.95
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	98.93
KOG0042	680	consensus Glycerol-3-phosphate dehydrogenase [Ener	98.89
PRK10157	428	putative oxidoreductase FixC; Provisional	98.89
PRK11728	393	hydroxyglutarate oxidase; Provisional	98.88
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	98.86
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	98.84
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	98.83
PRK13339	497	malate:quinone oxidoreductase; Reviewed	98.83
KOG2415	621	consensus Electron transfer flavoprotein ubiquinon	98.81
PRK10015	429	oxidoreductase; Provisional	98.81
KOG2820	399	consensus FAD-dependent oxidoreductase [General fu	98.8
KOG4254	561	consensus Phytoene desaturase [Coenzyme transport	98.79
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	98.76
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	98.76
TIGR00275	400	flavoprotein, HI0933 family. The model when search	98.74
PLN02985	514	squalene monooxygenase	98.74
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	98.72
PRK13977	576	myosin-cross-reactive antigen; Provisional	98.72
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	98.68
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	98.65
PLN02697	529	lycopene epsilon cyclase	98.64
PRK06185	407	hypothetical protein; Provisional	98.63
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	98.61
PRK05675	570	sdhA succinate dehydrogenase flavoprotein subunit;	98.61
KOG2853	509	consensus Possible oxidoreductase [General functio	98.56
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.54
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	98.52
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	98.49
PRK06126	545	hypothetical protein; Provisional	98.48
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.48
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	98.46
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	98.41
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	98.41
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	98.41
PRK07208	479	hypothetical protein; Provisional	98.4
TIGR01816	565	sdhA_forward succinate dehydrogenase, flavoprotein	98.39
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	98.39
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	98.39
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	98.38
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	98.37
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	98.36
PRK08244	493	hypothetical protein; Provisional	98.36
PRK06847	375	hypothetical protein; Provisional	98.35
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	98.35
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	98.35
PRK07045	388	putative monooxygenase; Reviewed	98.35
PRK08013	400	oxidoreductase; Provisional	98.33
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.33
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	98.32
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	98.32
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	98.32
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	98.31
PRK07190	487	hypothetical protein; Provisional	98.3
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	98.3
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	98.3
KOG2844	856	consensus Dimethylglycine dehydrogenase precursor	98.29
PRK06184	502	hypothetical protein; Provisional	98.28
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.27
PRK06834	488	hypothetical protein; Provisional	98.27
PRK11445	351	putative oxidoreductase; Provisional	98.26
PRK09126	392	hypothetical protein; Provisional	98.24
PTZ00367	567	squalene epoxidase; Provisional	98.24
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	98.24
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	98.23
PLN02507	499	glutathione reductase	98.23
PTZ00058	561	glutathione reductase; Provisional	98.21
PRK08132	547	FAD-dependent oxidoreductase; Provisional	98.19
PRK07588	391	hypothetical protein; Provisional	98.17
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	98.15
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	98.14
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	98.12
PRK07236	386	hypothetical protein; Provisional	98.11
PRK08163	396	salicylate hydroxylase; Provisional	98.11
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	98.09
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	98.05
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	98.05
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	98.04
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	98.03
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	98.03
PRK06996	398	hypothetical protein; Provisional	97.99
TIGR03377	516	glycerol3P_GlpA glycerol-3-phosphate dehydrogenase	97.98
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	97.98
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	97.97
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	97.97
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	97.97
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	97.97
PRK06370	463	mercuric reductase; Validated	97.95
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	97.95
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	97.93
PRK06116	450	glutathione reductase; Validated	97.91
PRK06753	373	hypothetical protein; Provisional	97.9
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	97.87
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	97.86
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	97.85
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	97.85
KOG2665	453	consensus Predicted FAD-dependent oxidoreductase [	97.84
PRK05868	372	hypothetical protein; Validated	97.83
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	97.82
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	97.82
PLN02546	558	glutathione reductase	97.82
KOG2852	380	consensus Possible oxidoreductase [General functio	97.81
KOG0029	501	consensus Amine oxidase [Secondary metabolites bio	97.81
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	97.81
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	97.8
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	97.8
PRK07538	413	hypothetical protein; Provisional	97.79
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	97.79
PRK07845	466	flavoprotein disulfide reductase; Reviewed	97.75
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	97.75
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	97.75
PTZ00153	659	lipoamide dehydrogenase; Provisional	97.73
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	97.73
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	97.71
PRK14694	468	putative mercuric reductase; Provisional	97.7
TIGR02053	463	MerA mercuric reductase. This model represents the	97.69
PRK13748	561	putative mercuric reductase; Provisional	97.69
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	97.67
PLN02463	447	lycopene beta cyclase	97.67
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	97.66
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	97.65
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	97.64
KOG2960	328	consensus Protein involved in thiamine biosynthesi	97.64
PLN02676	487	polyamine oxidase	97.6
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	97.6
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	97.6
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	97.59
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	97.58
PTZ00052	499	thioredoxin reductase; Provisional	97.58
PRK14727	479	putative mercuric reductase; Provisional	97.57
PRK06475	400	salicylate hydroxylase; Provisional	97.56
PLN02268	435	probable polyamine oxidase	97.56
KOG2311	679	consensus NAD/FAD-utilizing protein possibly invol	97.55
PLN02576	496	protoporphyrinogen oxidase	97.55
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	97.54
PRK09897	534	hypothetical protein; Provisional	97.52
TIGR03862	376	flavo_PP4765 uncharacterized flavoprotein, PP_4765	97.48
PRK11883	451	protoporphyrinogen oxidase; Reviewed	97.48
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	97.46
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	97.45
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	97.44
TIGR02352	337	thiamin_ThiO glycine oxidase ThiO. This family con	97.42
PRK07233	434	hypothetical protein; Provisional	97.41
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	97.41
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	97.38
PLN02568	539	polyamine oxidase	97.35
PRK10262	321	thioredoxin reductase; Provisional	97.35
PRK07846	451	mycothione reductase; Reviewed	97.33
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	97.33
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	97.3
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	97.3
PRK08294	634	phenol 2-monooxygenase; Provisional	97.21
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	97.2
COG3349	485	Uncharacterized conserved protein [Function unknow	97.16
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	97.14
PRK12416	463	protoporphyrinogen oxidase; Provisional	97.11
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	97.09
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	97.09
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	97.08
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	97.0
PRK12831	464	putative oxidoreductase; Provisional	97.0
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	96.98
KOG2614	420	consensus Kynurenine 3-monooxygenase and related f	96.95
KOG4716	503	consensus Thioredoxin reductase [Posttranslational	96.9
PLN02529	738	lysine-specific histone demethylase 1	96.86
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	96.86
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	96.85
TIGR03197	381	MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri	96.82
PLN02328	808	lysine-specific histone demethylase 1 homolog	96.79
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	96.78
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	96.77
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	96.76
KOG0685	498	consensus Flavin-containing amine oxidase [Coenzym	96.7
PLN02612	567	phytoene desaturase	96.69
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	96.68
PLN02852	491	ferredoxin-NADP+ reductase	96.64
PF00996	438	GDI: GDP dissociation inhibitor; InterPro: IPR0182	96.63
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	96.62
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	96.59
PRK12779	944	putative bifunctional glutamate synthase subunit b	96.58
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	96.56
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	96.55
PLN02487	569	zeta-carotene desaturase	96.53
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	96.53
KOG3855	481	consensus Monooxygenase involved in coenzyme Q (ub	96.53
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	96.53
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	96.51
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	96.5
KOG2403	642	consensus Succinate dehydrogenase, flavoprotein su	96.43
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	96.38
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	96.38
PRK12814	652	putative NADPH-dependent glutamate synthase small	96.31
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	96.3
COG2907	447	Predicted NAD/FAD-binding protein [General functio	96.26
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	96.19
PLN03000	881	amine oxidase	96.18
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	96.12
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	96.12
PRK12770	352	putative glutamate synthase subunit beta; Provisio	96.1
PRK09564	444	coenzyme A disulfide reductase; Reviewed	96.08
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	96.08
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	96.01
PLN02976	1713	amine oxidase	95.95
PRK14989	847	nitrite reductase subunit NirD; Provisional	95.94
PRK06567	1028	putative bifunctional glutamate synthase subunit b	95.92
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	95.92
TIGR02053	463	MerA mercuric reductase. This model represents the	95.85
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	95.85
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	95.82
PRK06370	463	mercuric reductase; Validated	95.81
PTZ00188	506	adrenodoxin reductase; Provisional	95.78
PRK10262	321	thioredoxin reductase; Provisional	95.72
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	95.7
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	95.7
KOG1276	491	consensus Protoporphyrinogen oxidase [Coenzyme tra	95.67
PRK14727	479	putative mercuric reductase; Provisional	95.66
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	95.64
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	95.63
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	95.61
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	95.51
PRK12831	464	putative oxidoreductase; Provisional	95.5
PRK13984	604	putative oxidoreductase; Provisional	95.43
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	95.41
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	95.4
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	95.38
PRK07846	451	mycothione reductase; Reviewed	95.3
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	95.29
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	95.25
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	95.22
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	95.14
PRK09564	444	coenzyme A disulfide reductase; Reviewed	95.09
PRK06116	450	glutathione reductase; Validated	95.06
PLN02507	499	glutathione reductase	95.0
PRK13512	438	coenzyme A disulfide reductase; Provisional	94.93
PRK07845	466	flavoprotein disulfide reductase; Reviewed	94.88
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	94.87
PRK13748	561	putative mercuric reductase; Provisional	94.77
KOG1800	468	consensus Ferredoxin/adrenodoxin reductase [Nucleo	94.77
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	94.75
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	94.74
PRK14694	468	putative mercuric reductase; Provisional	94.61
KOG1439	440	consensus RAB proteins geranylgeranyltransferase c	94.49
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	94.34
KOG4405	547	consensus GDP dissociation inhibitor [Signal trans	94.25
PRK12770	352	putative glutamate synthase subunit beta; Provisio	94.07
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	93.95
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	93.73
COG5044	434	MRS6 RAB proteins geranylgeranyltransferase compon	93.65
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	93.64
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	93.61
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	93.6
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	93.56
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	93.44
KOG3851	446	consensus Sulfide:quinone oxidoreductase/flavo-bin	92.65
PTZ00052	499	thioredoxin reductase; Provisional	92.55
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	92.49
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	92.19
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	92.17
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	91.66
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	91.62
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	91.61
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	91.58
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	91.57
COG0569	225	TrkA K+ transport systems, NAD-binding component [	91.28
PRK12779	944	putative bifunctional glutamate synthase subunit b	91.11
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	90.42
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	89.93
KOG2755	334	consensus Oxidoreductase [General function predict	89.81
PRK06567	1028	putative bifunctional glutamate synthase subunit b	89.74
PRK12814	652	putative NADPH-dependent glutamate synthase small	89.36
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	89.07
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	88.88
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	88.79
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	88.63
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	88.63
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	88.43
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	88.08
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	87.95
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	87.26
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	87.22
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	87.03
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	86.1
PRK13512	438	coenzyme A disulfide reductase; Provisional	86.1
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	86.08
PRK14989	847	nitrite reductase subunit NirD; Provisional	86.05
KOG3923	342	consensus D-aspartate oxidase [Amino acid transpor	85.54
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	85.42
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	85.36
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	85.3
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	85.24
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	85.06
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	84.96
PRK04148	134	hypothetical protein; Provisional	84.82
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	84.77
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	84.37
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	84.34
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	84.32
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	83.99
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	83.98
PTZ00153	659	lipoamide dehydrogenase; Provisional	83.94
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	83.6
PTZ00058	561	glutathione reductase; Provisional	83.5
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	83.46
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	83.24
PRK06719	157	precorrin-2 dehydrogenase; Validated	83.21
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	83.04
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	82.55
PLN02546	558	glutathione reductase	82.4
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	82.21
PRK15116	268	sulfur acceptor protein CsdL; Provisional	81.96
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	81.95
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	81.8
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	81.4
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	81.17
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	80.94
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	80.92
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	80.59
KOG2018	430	consensus Predicted dinucleotide-utilizing enzyme	80.38
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	80.32
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	80.02

>PLN02785 Protein HOTHEAD

Probab=100.00  E-value=6e-78  Score=636.54  Aligned_cols=460  Identities=49%  Similarity=0.852  Sum_probs=370.7

Q ss_pred             CCcccEEEECCCCchHHHHhhhhccCeeEEEecCCCCCCCCCccccchhccccCCCCCCccccccCcCCCceeecCceec
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSDNFSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEYTSVAQSFISTDGVQNHRGRVL  130 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Laeg~~VlvlE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l  130 (523)
                      ..+|||||||+|.+||++|.+|+++.+|||||+|+.+..++.......+.... ....|.+.+|.....+++.+.+|++|
T Consensus        53 ~~~yD~IIVG~G~aG~~lA~~Ls~~~~VLllE~G~~~~~~~~~~~~~~~~~~~-~d~~~~~~~q~~~~~~~~~~~rGr~L  131 (587)
T PLN02785         53 DSAYDYIVVGGGTAGCPLAATLSQNFSVLLLERGGVPFGNANVSFLENFHIGL-ADTSPTSASQAFISTDGVINARARVL  131 (587)
T ss_pred             cccCCEEEECcCHHHHHHHHHHhcCCcEEEEecCCCCCCCchhhhHHhhCCcc-cccCCccccccccCCCceecccccee
Confidence            66799999999999999999999999999999998654444443333332221 12345566777777788899999999


Q ss_pred             ccccccCCccccCCChhhHhhCCCCHHHHHHHhHhhhccccCCCCCChhHHHHHHHHHHcCCCCCCCCCcCCCCcceeee
Q 009873          131 GGSSAINGGFYSRAREDFVKKAGWDEELVKKAYEWVESKVVFPPELTPWQSVVEFGLLEAGILPYNGYSLEHIEGTKIGG  210 (523)
Q Consensus       131 GG~s~~~~~~~~r~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  210 (523)
                      ||+|.+|+|++.|++.++++..+|+++.+.++|++.|+.....|...++...+.+++.+.|++++++...+...|...+.
T Consensus       132 GGsS~iN~~~y~Rg~~~d~~~~GW~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~a~~e~G~~~~n~~~~d~~~G~~~g~  211 (587)
T PLN02785        132 GGGTCINAGFYSRASTRFIQKAGWDAKLVNESYPWVERQIVHWPKVAPWQAALRDSLLEVGVSPFNGFTYDHVYGTKVGG  211 (587)
T ss_pred             cchhhhcCeEEEeCCHHHhccCCCCcccccchHHHHhcccccCCCcChHHHHHHHHHHHcCCCccCCCCCCCccceeeeE
Confidence            99999999999999998888789999999999999998766666677888999999999999888877666666666677


Q ss_pred             eEEcCCCeeechHhhhhhCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcE
Q 009873          211 TAFDQCGKRHTSADLLEAGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDV  290 (523)
Q Consensus       211 ~~~~~~g~~~~~~~~l~~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~V  290 (523)
                      +.++..|.|++++.+++.+.+.|++|+++++|++|+++++++  ..+++||++.+.+|+   .+++..    ..+++++|
T Consensus       212 ~i~~~~g~R~saa~l~~~~~~~nl~Vl~~a~V~rIl~~~~~~--~~ra~GV~~~~~~g~---~~~~~~----~~~~~~eV  282 (587)
T PLN02785        212 TIFDEFGRRHTAAELLAAGNPNKLRVLLHATVQKIVFDTSGK--RPRATGVIFKDENGN---QHQAFL----SNNKGSEI  282 (587)
T ss_pred             EEeCCCCEEcCHHHHHhhcCCCCeEEEeCCEEEEEEEcCCCC--CceEEEEEEEECCCc---eEEEEe----ecccCceE
Confidence            777778999998887777778999999999999999986421  128999999886676   444421    01136899


Q ss_pred             EEecCCchhHHHHHhhCCCChhhhhhCCCCceecCcccccccccCcCceEEEecCCCCCCCCCcc-----eeeeeec---
Q 009873          291 ILSAGALGSPQLLLLSGIGPHDHLKDLNIPTIVDLQEVGEGMQDNPCIAKLVDTMPQKRLPEPPE-----VVAGVLP---  362 (523)
Q Consensus       291 ILaaGa~~tp~lLl~SGig~~~~l~~~gi~~~~~~p~vG~~l~dh~~~~~~~~~~~~~~~~~~~~-----~~g~~~~---  362 (523)
                      |||||+++||+|||+|||||.++|+++||+++.++|+||+||+||+...+.+.... +......+     ..|.|..   
T Consensus       283 ILsAGai~sP~lL~~SGIGp~~~L~~~gIpvv~dlP~VG~NL~DHp~~~i~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~  361 (587)
T PLN02785        283 ILSAGAIGSPQMLLLSGIGPKKELKKHKIPVVLHNEHVGKGMADNPMNSIFVPSKA-PVEQSLIQTVGITKMGVYIEASS  361 (587)
T ss_pred             EecccccCCHHHHHHcCCCCHHHHHHcCCCeeecCCCcccchhhCcccceEEEeCC-CchhhhHhhhhhhccccceeccc
Confidence            99999999999999999999999999999999999999999999999877754321 11000000     0000100   


Q ss_pred             ---------------------------CC--------------CCC--Cc---ccEEeeecCcCcceEEEecCCCCCCCC
Q 009873          363 ---------------------------IS--------------SNA--SR---MPIAAKLAFPISKGKLELDSTDPRQNP  396 (523)
Q Consensus       363 ---------------------------~~--------------~~~--~~---~~~~~~~~~p~s~g~v~l~~~d~~~~p  396 (523)
                                                 ..              ...  ..   ..+...++.|.|||+|+|.++||.+.|
T Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~P~SrG~V~L~ssdp~~~P  441 (587)
T PLN02785        362 GFGQSPDSIHCHHGIMSAEIGQLSTIPPKQRTPEAIQAYIHRKKNLPHEAFNGGFILEKIAGPISTGHLSLINTNVDDNP  441 (587)
T ss_pred             ccccCchhhhhhccccccccccccccCcccccchhhhhhccCcccccccccccceEEEEecCCCcceEEEecCCCCCcCC
Confidence                                       00              000  00   123456679999999999999999999


Q ss_pred             eeecCCCCChhhHHHHHHHHHHHHHHhcccccccccCCCC-----------------CCCCCCCHHHHHHHHHccccccc
Q 009873          397 SIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSFLGIKP-----------------QEKLMSNSDELRKLCKNNVRTFY  459 (523)
Q Consensus       397 ~i~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~  459 (523)
                      .|++||+.+|.|++.+.++++.++++++...+..+...+.                 .|...+++++|++|+++...+.|
T Consensus       442 ~i~~ny~~~p~Dl~~~~~g~r~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~l~~~ir~~~~t~~  521 (587)
T PLN02785        442 SVTFNYFKHPQDLQRCVYGIRTIEKIVKTNHFTNFTQCDKQTMEKVLNMSVKANINLIPKHTNDTKSLEQFCKDTVITIW  521 (587)
T ss_pred             ccccccCCCHHHHHHHHHHHHHHHHHHcChhhhhhccccccccccccccccccccccCCCCCCCHHHHHHHHHHhccccc
Confidence            9999999999999999999999999999988776642211                 12224577899999999999999


Q ss_pred             ccccceecccccCCCCcEeccCCcEEeeccccCCCCCCCcHHHHHHHHHHHHHHHHHHHhhh
Q 009873          460 HYHGGCIVGSVVDKDYRVYGVKGLRVIDGSTFQESPGTNPMATVMMLGRYQGVKLVEERREI  521 (523)
Q Consensus       460 H~~Gt~~MG~VvD~~~rv~g~~nL~V~D~Sv~P~~~~~nPtlTi~Ala~r~a~~i~~~~~~~  521 (523)
                      |++|||+||+|||+++||||++||||||+|+||.+|++||++|+||+|+|+|+.|++++++.
T Consensus       522 H~~GTc~MG~VVD~~lrV~GV~~LRVvDaSi~P~~p~~np~atv~miaer~A~~Il~~~~~~  583 (587)
T PLN02785        522 HYHGGCHVGKVVDQNYKVLGVSRLRVIDGSTFDESPGTNPQATVMMMGRYMGVKILRERLGR  583 (587)
T ss_pred             CCcccccCCCeECCCCeEeccCCeEEeecccCCCCCCCccHHHHHHHHHHHHHHHHHHhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999875

>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]

Probab=100.00  E-value=3.3e-76  Score=598.38  Aligned_cols=452  Identities=37%  Similarity=0.543  Sum_probs=351.7

Q ss_pred             ccccCCcccEEEECCCCchHHHHhhhhcc--CeeEEEecCCCCCCCCCccccchhccccC---CCCCCccccccC----c
Q 009873           47 KEVAGKSFDYIVVGGGTTGCPLAATLSDN--FSVLLVERGGSPFGNPLVTDKRFFGFSLL---QTDEYTSVAQSF----I  117 (523)
Q Consensus        47 ~~~~~~~~DvIIVGsG~aG~~~A~~Laeg--~~VlvlE~G~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~----~  117 (523)
                      ......+||+||||||.|||++|.+|+|+  .||||||+|+.+   +...+++.....++   .+..|.+.|+..    .
T Consensus        51 ~~~~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~---~~~~~~p~~~~~~q~s~~dw~y~t~Ps~~ac~~m  127 (623)
T KOG1238|consen   51 GSELDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP---PLYSDPPLLAANLQLSLYDWSYHTEPSQHACLAM  127 (623)
T ss_pred             ccccccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC---cccccchHHHHHhccccccccCcCccChhhhhhh
Confidence            34467899999999999999999999994  999999999855   23334333332222   233567777765    5


Q ss_pred             CCCceeecCceecccccccCCccccCCChhhHhh------CCCCHHHHHHHhHhhhccccCCCCCC--------------
Q 009873          118 STDGVQNHRGRVLGGSSAINGGFYSRAREDFVKK------AGWDEELVKKAYEWVESKVVFPPELT--------------  177 (523)
Q Consensus       118 ~~~~~~~~~g~~lGG~s~~~~~~~~r~~~~~~~~------~~w~~~~~~~~~~~~~~~~~~~p~~~--------------  177 (523)
                      .++...|.|||++||+|.+|+|+|.|+.+.++++      .+|+++++.+||+|.|+.....++..              
T Consensus       128 ~~~~c~wpRGrVLGGsS~iN~m~Y~RG~r~Dyd~W~~~gnpgW~y~~vl~yf~k~E~~~~~~~~~~~y~~~~g~~~ve~~  207 (623)
T KOG1238|consen  128 SEDRCYWPRGRVLGGSSVLNAMFYVRGNRRDYDRWAAEGNPGWSYDEVLPYFKKSEDKVVPDPELTPYHGAGGPLLVEAG  207 (623)
T ss_pred             cCCceecCccceecccccccceEEecCCccchHHHHHhcCCCCCHHHHHHHHHHHhhccCCCcccCcccccCCcceeccc
Confidence            6788999999999999999999999998544432      46999999999999999876554333              


Q ss_pred             ----hhHHHHHHHHHHcCCC--CCCCCCcCCCCcceeeeeEEcCCCeeechHhh-hh-h-CCCCCeEEEeccEEEEEEEc
Q 009873          178 ----PWQSVVEFGLLEAGIL--PYNGYSLEHIEGTKIGGTAFDQCGKRHTSADL-LE-A-GNPKNLVVLLNATVNNIIFS  248 (523)
Q Consensus       178 ----~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-l~-~-~~~~g~~i~~~~~V~~l~~~  248 (523)
                          +....+.++..+.|..  ++++...   .+... .-.-.++|.|+++... +. . ..++|+.+..++.|++|++|
T Consensus       208 ~~~~~~~~~~~~ag~e~G~~~~D~nG~~~---tg~~~-l~~t~~~g~R~s~~~a~l~~~~~~R~NL~~~~~~~vtrvl~D  283 (623)
T KOG1238|consen  208 VYPNNLFTAFHRAGTEIGGSIFDRNGERH---TGASL-LQYTIRNGIRVSLAKAYLKPIRLTRPNLHISRNAAVTRVLID  283 (623)
T ss_pred             cccCchhhHhHHhHHhcCCCccCCCCccc---cchhh-hhccccCCEEEEehhhhhhhhhccCccccccccceEEEEEEc
Confidence                3344555566666631  1122111   11110 0111356778776654 44 3 34789999999999999999


Q ss_pred             CCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHhhCCCChhhhhhCCCCceecCccc
Q 009873          249 NNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSGIGPHDHLKDLNIPTIVDLQEV  328 (523)
Q Consensus       249 ~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~SGig~~~~l~~~gi~~~~~~p~v  328 (523)
                      ..++    ++.||++....|+   .+++++        +|+||||||+|+||+|||.|||||.+||+++|||++.++|+|
T Consensus       284 ~~~~----~a~gv~~~~~~~~---~~~v~a--------~kEVILSAGAi~SPQLLMLSGIGP~~~L~~~gIpvv~dLP~V  348 (623)
T KOG1238|consen  284 PAGK----RAKGVEFVRDGGK---EHTVKA--------RKEVILSAGAINSPQLLMLSGIGPADHLKKLGIPVVLDLPGV  348 (623)
T ss_pred             CCCc----eEEEEEEEecCce---eeeecc--------cceEEEeccccCCHHHHHHcCCCcHHHHHhcCCCeeccCccc
Confidence            8765    9999999884477   888887        899999999999999999999999999999999999999999


Q ss_pred             ccccccCcCceEEEecCCCCCCCCCcc------------------------eeeeeecCCC-------------------
Q 009873          329 GEGMQDNPCIAKLVDTMPQKRLPEPPE------------------------VVAGVLPISS-------------------  365 (523)
Q Consensus       329 G~~l~dh~~~~~~~~~~~~~~~~~~~~------------------------~~g~~~~~~~-------------------  365 (523)
                      |+||+||+...++..... +......+                        ..+ |+....                   
T Consensus       349 G~nLqDH~~~~~~~~~~~-~~~~~~~~~~~~~~~~~yl~~~~G~~~~~~~e~~~-f~~t~~~~~~~~~PD~~~~~~~~~~  426 (623)
T KOG1238|consen  349 GQNLQDHPMNPGFVFSTN-PVELSLIRLVGITTVGQYLEGGSGPLASPGVETLG-FINTVSSNLSLDWPDIELHFVAGSL  426 (623)
T ss_pred             ccccccccccceeeecCC-CccccccccccchHHHHHHHcCCCCcccCcceeeE-EeccccccCcCCCCCeeEEeccccc
Confidence            999999999876643322 21111100                        011 111100                   


Q ss_pred             ------------C------------CCcccEEeeecCcCcceEEEecCCCCCCCCeeecCCCCChhhHHHHHHHHHHHHH
Q 009873          366 ------------N------------ASRMPIAAKLAFPISKGKLELDSTDPRQNPSIKFNYLAKEKDLHECVKMVQLLDK  421 (523)
Q Consensus       366 ------------~------------~~~~~~~~~~~~p~s~g~v~l~~~d~~~~p~i~~~~~~~~~D~~~~~~~~~~~~~  421 (523)
                                  +            ...+.++..++.|.|+|+|.|.++||.+.|+|++||+.+|+|++.+.++++.+.+
T Consensus       427 ~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~l~P~SrG~l~L~s~nP~~~P~I~~NY~~~p~Dv~~~vegi~~~~~  506 (623)
T KOG1238|consen  427 SSDGLTALRKALGEIYQALFGELTNSDSFVIFPKLLRPKSRGRLKLRSTNPRDNPLITPNYFTHPEDVATLVEGIRTIIR  506 (623)
T ss_pred             cccchhhhhhhcchHHHHhhhhhhcCceeEEeehhcCCCccceEEecCCCCCcCceeccCcCCCHHHHHHHHHHHHHHHH
Confidence                        0            0013356777899999999999999999999999999999999999999999999


Q ss_pred             HhcccccccccCCCCC---CC----CCCCHHHHHHHHHcccccccccccceecc------cccCCCCcEeccCCcEEeec
Q 009873          422 VTKSQSVSSFLGIKPQ---EK----LMSNSDELRKLCKNNVRTFYHYHGGCIVG------SVVDKDYRVYGVKGLRVIDG  488 (523)
Q Consensus       422 i~~~~~~~~~~~~~~~---~~----~~~~~~~~~~~~~~~~~~~~H~~Gt~~MG------~VvD~~~rv~g~~nL~V~D~  488 (523)
                      +.+...++.+..-...   |.    ...++++|++|++....+.||++|||+||      +|||+++||||++||+|+|+
T Consensus       507 l~~s~af~~~~~r~~~~~~~~c~~~~~~sd~yw~c~~R~~~~TiyH~~GtckMGp~~D~~aVVD~~lrV~Gv~~LRVVDa  586 (623)
T KOG1238|consen  507 LSNSKAFQRFGARLWKKPVPGCDLLAFLSDAYWECFCRHTVVTIYHYSGTCKMGPSSDPTAVVDPQLRVHGVRGLRVVDA  586 (623)
T ss_pred             HHcCHHHHHhcchhccccCCCcccccCCCHHHHHHHHHhccceeeccCCceEeCCccCCCcccCCcceeccccCceEeec
Confidence            9999888877643222   11    24689999999999999999999999999      99999999999999999999


Q ss_pred             cccCCCCCCCcHHHHHHHHHHHHHHHHHHHhhhc
Q 009873          489 STFQESPGTNPMATVMMLGRYQGVKLVEERREIC  522 (523)
Q Consensus       489 Sv~P~~~~~nPtlTi~Ala~r~a~~i~~~~~~~~  522 (523)
                      |+||.++++||..|+||||+|.|+.|+++++.+.
T Consensus       587 SimP~~psgN~nA~v~MIgek~ad~Ik~~~~~~~  620 (623)
T KOG1238|consen  587 SIMPESPSGNPNAPVMMIGEKAADMIKEEWLANK  620 (623)
T ss_pred             cccCCCCCCCccHHHHHHHHHHHHHHHHHhhhcC
Confidence            9999999999999999999999999999988653

>PRK02106 choline dehydrogenase; Validated

Probab=100.00  E-value=7.9e-70  Score=580.19  Aligned_cols=450  Identities=30%  Similarity=0.451  Sum_probs=341.3

Q ss_pred             cCCcccEEEECCCCchHHHHhhhhc--cCeeEEEecCCCCC-CCCCccccchhccccCC---CCCCccccccCcCCCcee
Q 009873           50 AGKSFDYIVVGGGTTGCPLAATLSD--NFSVLLVERGGSPF-GNPLVTDKRFFGFSLLQ---TDEYTSVAQSFISTDGVQ  123 (523)
Q Consensus        50 ~~~~~DvIIVGsG~aG~~~A~~Lae--g~~VlvlE~G~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~  123 (523)
                      +..+|||||||||++|+++|.+|+|  |.+|||||+|+... .......+..+...+..   ...|.+.++.+...+.+.
T Consensus         2 ~~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~   81 (560)
T PRK02106          2 TTMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGPDYRWDFFIQMPAALAFPLQGKRYNWAYETEPEPHMNNRRME   81 (560)
T ss_pred             CCCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCcccCCCcceeCcHHHHHhcCCCceeeceecccCCCCCCCeee
Confidence            3467999999999999999999999  69999999997432 22222222221111111   123455666666666788


Q ss_pred             ecCceecccccccCCccccCCChhhHhh-------CCCCHHHHHHHhHhhhccccC---------------C-CCCChhH
Q 009873          124 NHRGRVLGGSSAINGGFYSRAREDFVKK-------AGWDEELVKKAYEWVESKVVF---------------P-PELTPWQ  180 (523)
Q Consensus       124 ~~~g~~lGG~s~~~~~~~~r~~~~~~~~-------~~w~~~~~~~~~~~~~~~~~~---------------~-p~~~~~~  180 (523)
                      +.+|++|||+|.+|+|++.|+.+.+++.       .+|+++++++||+++|+...-               . ....+..
T Consensus        82 ~~~g~~lGGsS~iN~~~~~R~~~~Dfd~w~~~~g~~~Ws~~~l~py~~k~E~~~~~~~~~~g~~gp~~~~~~~~~~~~~~  161 (560)
T PRK02106         82 CPRGKVLGGSSSINGMVYIRGNAMDYDNWAELPGLEGWSYADCLPYFKKAETRDGGEDDYRGGDGPLSVTRGKPGTNPLF  161 (560)
T ss_pred             cccccccCCCCCccceEEecCCHHHHHHHHhhcCCCCCCHHHHHHHHHHhhccCCCCccccCCCCCEEEeCCCCCCCHHH
Confidence            8999999999999999999998766643       379999999999999986521               0 1234556


Q ss_pred             HHHHHHHHHcCCCCCCCCCcCCCCcceeeeeEEcCCCeeechHh-hhh-hCCCCCeEEEeccEEEEEEEcCCCCCCCcee
Q 009873          181 SVVEFGLLEAGILPYNGYSLEHIEGTKIGGTAFDQCGKRHTSAD-LLE-AGNPKNLVVLLNATVNNIIFSNNGKANESRA  258 (523)
Q Consensus       181 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~l~-~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v  258 (523)
                      +.+.++++++|++...........+...... .+..|.|.++.. +++ +.++.|++|++++.|++|+++++      ++
T Consensus       162 ~~~~~a~~~lG~~~~~~~~~~~~~g~~~~~~-~~~~g~R~s~~~~~l~~a~~~~nl~i~~~a~V~rI~~~~~------~a  234 (560)
T PRK02106        162 QAFVEAGVQAGYPRTDDLNGYQQEGFGPMDR-TVTNGRRWSAARAYLDPALKRPNLTIVTHALTDRILFEGK------RA  234 (560)
T ss_pred             HHHHHHHHHcCCCcCCCCCCCCCceeEEEee-ecCCCEEEChHHHhhccccCCCCcEEEcCCEEEEEEEeCC------eE
Confidence            7788888999986433222111222221111 245788887765 455 55678999999999999999854      99


Q ss_pred             eEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHhhCCCChhhhhhCCCCceecCcccccccccCcCc
Q 009873          259 HGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSGIGPHDHLKDLNIPTIVDLQEVGEGMQDNPCI  338 (523)
Q Consensus       259 ~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~SGig~~~~l~~~gi~~~~~~p~vG~~l~dh~~~  338 (523)
                      +||++.+.+++   ...+.         +|.||||||+++||+|||+||||++++|+++||+++.++|+||+||+||+..
T Consensus       235 ~GV~~~~~~~~---~~~~~---------ak~VILaaGai~TP~LLl~SGIG~~~~L~~~gI~~~~dlP~VG~NL~dH~~~  302 (560)
T PRK02106        235 VGVEYERGGGR---ETARA---------RREVILSAGAINSPQLLQLSGIGPAEHLKELGIPVVHDLPGVGENLQDHLEV  302 (560)
T ss_pred             EEEEEEeCCcE---EEEEe---------eeeEEEccCCCCCHHHHhhcCCCChHHHHhcCCceEeeCCCCCcChhhCccc
Confidence            99999885443   33334         5999999999999999999999999999999999999999999999999988


Q ss_pred             eEEEecCCCCCC-C---CCc--------------------ceeeee----------------ecCC---CCC-----Ccc
Q 009873          339 AKLVDTMPQKRL-P---EPP--------------------EVVAGV----------------LPIS---SNA-----SRM  370 (523)
Q Consensus       339 ~~~~~~~~~~~~-~---~~~--------------------~~~g~~----------------~~~~---~~~-----~~~  370 (523)
                      .+.+........ .   .+.                    ...+.|                ++..   .+.     ..+
T Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  382 (560)
T PRK02106        303 YIQYECKQPVSLYPALKWWNKPKIGAEWLFTGTGLGASNHFEAGGFIRSRAGVDWPNIQYHFLPVAIRYDGSNAVKGHGF  382 (560)
T ss_pred             eEEEEeCCCcccccccchhhhhHHHHHHHhcCCCCccccccceeeEEecCCCCCCCCeEEEEeeccccccCCCCCCCCeE
Confidence            766543221000 0   000                    000001                1100   000     012


Q ss_pred             cEEeeecCcCcceEEEecCCCCCCCCeeecCCCCChhhHHHHHHHHHHHHHHhcccccccccCCCCCCC-CCCCHHHHHH
Q 009873          371 PIAAKLAFPISKGKLELDSTDPRQNPSIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSFLGIKPQEK-LMSNSDELRK  449 (523)
Q Consensus       371 ~~~~~~~~p~s~g~v~l~~~d~~~~p~i~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~  449 (523)
                      .+...+..|.++|+|+|+++|+++.|.|+++|+.++.|++.+.++++.++++++.+++..+...+..|. ...+++++++
T Consensus       383 ~~~~~~~~P~srG~V~L~s~d~~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~  462 (560)
T PRK02106        383 QAHVGPMRSPSRGSVKLKSADPRAHPSILFNYMSTEQDWREFRDAIRLTREIMAQPALDPYRGREISPGADVQTDEEIDA  462 (560)
T ss_pred             EEEEEecCCcceEEEEEeCCCCccCceEccccCCCHHHHHHHHHHHHHHHHHHcChhhhhccccccCCCcccCCHHHHHH
Confidence            234456799999999999999999999999999999999999999999999999988877654444443 2367888999


Q ss_pred             HHHcccccccccccceecc----cccCCCCcEeccCCcEEeeccccCCCCCCCcHHHHHHHHHHHHHHHHHHH
Q 009873          450 LCKNNVRTFYHYHGGCIVG----SVVDKDYRVYGVKGLRVIDGSTFQESPGTNPMATVMMLGRYQGVKLVEER  518 (523)
Q Consensus       450 ~~~~~~~~~~H~~Gt~~MG----~VvD~~~rv~g~~nL~V~D~Sv~P~~~~~nPtlTi~Ala~r~a~~i~~~~  518 (523)
                      |++....+.+|++||||||    +|||++|||||++||||+|+||||+.+++||++|+||+|+|+|+.|+++.
T Consensus       463 ~i~~~~~~~~H~~GTcrMG~d~~sVVD~~~rV~Gv~nLrVvDaSv~P~~~~~np~~ti~aiaeraAd~I~~~~  535 (560)
T PRK02106        463 FVREHAETAYHPSCTCKMGTDPMAVVDPEGRVHGVEGLRVVDASIMPTITNGNLNAPTIMIAEKAADLIRGRT  535 (560)
T ss_pred             HHHhccCcCcccCCCeecCCCCCeeECCCCEEeccCCeEEeeccccCCCCCcchHHHHHHHHHHHHHHHhccC
Confidence            9999988999999999999    79999999999999999999999999999999999999999999998864

>TIGR01810 betA choline dehydrogenase

Probab=100.00  E-value=6.3e-69  Score=570.30  Aligned_cols=444  Identities=30%  Similarity=0.438  Sum_probs=338.8

Q ss_pred             cEEEECCCCchHHHHhhhhc-c-CeeEEEecCCCCCC-CCCccccchhccccCC---CCCCccccccCcCCCceeecCce
Q 009873           55 DYIVVGGGTTGCPLAATLSD-N-FSVLLVERGGSPFG-NPLVTDKRFFGFSLLQ---TDEYTSVAQSFISTDGVQNHRGR  128 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g-~~VlvlE~G~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~  128 (523)
                      ||||||||++|+++|.+|+| + .||||||+|+.... +.....+..+...+..   ...|.+.++....++.+.+.+|+
T Consensus         1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~   80 (532)
T TIGR01810         1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGSDYPWDLLIQMPAALAYPAGNKRYNWIYETEPEPHMNNRRVGHARGK   80 (532)
T ss_pred             CEEEECCCchHHHHHHHhccCCCCeEEEEecCCCCCCCCcceeCcHHHHHhcCCCCcceeeEcccCCCCCCceEeeeccc
Confidence            89999999999999999999 6 79999999974321 2222222221111111   12455667777777788899999


Q ss_pred             ecccccccCCccccCCChhhHhh-------CCCCHHHHHHHhHhhhccccC---------------CCCCChhHHHHHHH
Q 009873          129 VLGGSSAINGGFYSRAREDFVKK-------AGWDEELVKKAYEWVESKVVF---------------PPELTPWQSVVEFG  186 (523)
Q Consensus       129 ~lGG~s~~~~~~~~r~~~~~~~~-------~~w~~~~~~~~~~~~~~~~~~---------------~p~~~~~~~~~~~~  186 (523)
                      +|||+|.+|++++.|+++.+++.       .+|.|+++.+||+++|+....               .+...+..+.+.++
T Consensus        81 ~lGGss~in~~~~~R~~~~d~~~w~~~~g~~~W~~~~l~py~~~~E~~~~~~~~~~g~~G~~~v~~~~~~~~~~~~~~~a  160 (532)
T TIGR01810        81 VLGGSSSINGMIYQRGNPMDYEKWAKPEGMESWDYADCLPYYKRLETTFGGEKPYRGHDGPIKVRRGPADNPLFQAFIEA  160 (532)
T ss_pred             ccCCCCCEeeeEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCCCcccCCCCCCEEEecCCCCCHHHHHHHHH
Confidence            99999999999999998766542       379999999999999987541               11234567778888


Q ss_pred             HHHcCCCCCCCCCcCCCCcceeeeeEEcCCCeeechHh-hhh-hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEE
Q 009873          187 LLEAGILPYNGYSLEHIEGTKIGGTAFDQCGKRHTSAD-LLE-AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFI  264 (523)
Q Consensus       187 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~l~-~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~  264 (523)
                      ++++|++...........++..... .+..|.|+++.. +++ +.++.|++|+++++|++|+++++      +++||++.
T Consensus       161 ~~~~G~~~~~~~~~~~~~g~~~~~~-~~~~g~r~s~~~~~l~~a~~r~nl~i~~~~~V~rI~~~~~------ra~GV~~~  233 (532)
T TIGR01810       161 GVEAGYNKTPDVNGFRQEGFGPMDS-TVHNGRRVSAARAYLHPAMKRPNLEVQTRAFVTKINFEGN------RATGVEFK  233 (532)
T ss_pred             HHHcCCCccCCCCCCCccceEEEEE-EcCCCEEEcHHHHHhhhhccCCCeEEEeCCEEEEEEecCC------eEEEEEEE
Confidence            8999986433322111222222112 245788888765 455 45588999999999999999855      99999998


Q ss_pred             ecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHhhCCCChhhhhhCCCCceecCcccccccccCcCceEEEec
Q 009873          265 KSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSGIGPHDHLKDLNIPTIVDLQEVGEGMQDNPCIAKLVDT  344 (523)
Q Consensus       265 ~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~SGig~~~~l~~~gi~~~~~~p~vG~~l~dh~~~~~~~~~  344 (523)
                      +. ++   ..++.+        +|.||||||+++||+||++||||++++|+++||+++.++|+||+||+||+...+.+..
T Consensus       234 ~~-~~---~~~~~~--------ak~VIlaAGai~SP~LLl~SGIG~~~~L~~~gI~~~~~lp~VG~nL~DH~~~~~~~~~  301 (532)
T TIGR01810       234 KG-GR---KEHTEA--------NKEVILSAGAINSPQLLQLSGIGDAEHLRELGIEPRIHLPGVGENLQDHLEVYVQHAC  301 (532)
T ss_pred             eC-Cc---EEEEEE--------eeeEEEccCCCCCHHHHHhcCCCCHHHHHhcCCCeEeeCCccccchhhcccceeEEEe
Confidence            73 33   344433        5999999999999999999999999999999999999999999999999988777643


Q ss_pred             CCCCC-CCC--------------------Cc--c-eeeeee----------------cCC---CCC-----CcccEEeee
Q 009873          345 MPQKR-LPE--------------------PP--E-VVAGVL----------------PIS---SNA-----SRMPIAAKL  376 (523)
Q Consensus       345 ~~~~~-~~~--------------------~~--~-~~g~~~----------------~~~---~~~-----~~~~~~~~~  376 (523)
                      ..... ...                    ..  . ..+.|+                +..   .+.     ..+.+....
T Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (532)
T TIGR01810       302 KQPVSLYPSLNWLKQPFIGAQWLFGRKGAGASNHFEGGGFVRSNDDVDYPNIQYHFLPVAIRYDGTKAPKAHGFQVHVGP  381 (532)
T ss_pred             cCCcccccccchhhhhHHHHHHHhcCCCCccccccceeEEEecCCCCCCCCeEEEEEeeeeccCCCCCCCCCcEEEEEee
Confidence            32100 000                    00  0 000011                100   000     012234566


Q ss_pred             cCcCcceEEEecCCCCCCCCeeecCCCCChhhHHHHHHHHHHHHHHhcccccccccCCCCCCC-CCCCHHHHHHHHHccc
Q 009873          377 AFPISKGKLELDSTDPRQNPSIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSFLGIKPQEK-LMSNSDELRKLCKNNV  455 (523)
Q Consensus       377 ~~p~s~g~v~l~~~d~~~~p~i~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  455 (523)
                      ..|.|+|+|+|+++|+.+.|.|+++|+.++.|++.+.++++.++++++..++..+...+..|. ...+++++++|++...
T Consensus       382 ~~P~srG~V~L~s~dp~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~p~~~~~~d~~~~~~ir~~~  461 (532)
T TIGR01810       382 MYSNSRGHVKIKSKDPFEKPEIVFNYMSHEEDWREFREAIRVTREILKQKALDPYRGGEISPGPEVQTDEEIDEFVRRHG  461 (532)
T ss_pred             cCCCCceEEEecCCCCccCceeccccCCCHHHHHHHHHHHHHHHHHHcCcchhhccccccCCCCCCCCHHHHHHHHhhhc
Confidence            799999999999999999999999999999999999999999999999988877654444442 3468899999999999


Q ss_pred             ccccccccceecc------cccCCCCcEeccCCcEEeeccccCCCCCCCcHHHHHHHHHHHHHHHHHH
Q 009873          456 RTFYHYHGGCIVG------SVVDKDYRVYGVKGLRVIDGSTFQESPGTNPMATVMMLGRYQGVKLVEE  517 (523)
Q Consensus       456 ~~~~H~~Gt~~MG------~VvD~~~rv~g~~nL~V~D~Sv~P~~~~~nPtlTi~Ala~r~a~~i~~~  517 (523)
                      .+.+|++||||||      +|||+++||||++||||+|+||||+.+++||++|+||+|+|+||.|+++
T Consensus       462 ~~~~H~~GTcrMG~~~~~~~VVD~~~rV~Gv~nLrVvDaSv~P~~~~~n~~~t~~aiaeraAd~I~~~  529 (532)
T TIGR01810       462 ETALHPCGTCKMGPASDEMSVVDPETRVHGMEGLRVVDASIMPRITNGNLNAPVIMMGEKAADIIRGK  529 (532)
T ss_pred             ccccccccceeCCCcccCCCccCCCCeEeccCCcEEeeeccCCCCCCCccHHHHHHHHHHHHHHHhcc
Confidence            9999999999999      5999999999999999999999999999999999999999999999864

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=100.00  E-value=1.6e-61  Score=509.03  Aligned_cols=449  Identities=27%  Similarity=0.388  Sum_probs=349.7

Q ss_pred             cCCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCCCCCCccccchhccccCC---CCCCccccccCcCCCceeec
Q 009873           50 AGKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPFGNPLVTDKRFFGFSLLQ---TDEYTSVAQSFISTDGVQNH  125 (523)
Q Consensus        50 ~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~  125 (523)
                      ...+|||||||||.+|+++|.+|++ +++|||||+|+....- ....+..+.....+   ...|.+.++.+...+.+.+.
T Consensus         4 ~~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~~~~~~-~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~   82 (542)
T COG2303           4 MKMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGGPDRRP-LIQMPAAYAFLMNGPRYDWGFRTEPEPHLRGRELAWP   82 (542)
T ss_pred             ccCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCCCCCcc-ceecchhHhhhccCcccCCccccCcccCCCCcccccc
Confidence            4568999999999999999999999 8999999999743221 23334444443333   34567777777778889999


Q ss_pred             CceecccccccCCccccCCChhhHhh-------CCCCHHHHHHHhHhhhccccC--------C----C-------CCChh
Q 009873          126 RGRVLGGSSAINGGFYSRAREDFVKK-------AGWDEELVKKAYEWVESKVVF--------P----P-------ELTPW  179 (523)
Q Consensus       126 ~g~~lGG~s~~~~~~~~r~~~~~~~~-------~~w~~~~~~~~~~~~~~~~~~--------~----p-------~~~~~  179 (523)
                      ++++|||+|++|+|++.|....+++.       .+|+++++.+||+++|+....        +    |       ...+.
T Consensus        83 rgk~lGGsS~ing~~~~R~~~~Df~~w~~~~G~~~W~y~d~lPyf~~aE~~~~~~g~~~~~~~g~~gp~~~~~~~~~~~~  162 (542)
T COG2303          83 RGKVLGGSSSINGMVYVRGHPEDFDAWAQESGAPGWPYDDVLPYFKRAEDLLGVGGQDLRTWHGGGGPLPVSPPRSPNPI  162 (542)
T ss_pred             ccCcccchhhhccceeecCCHHHHHHHHhhcCCCCCCccccHHHHHHHHhhcCCCCCCCCCCcCCCCCccccCCCCchHH
Confidence            99999999999999999998876642       459999999999999975442        1    1       12356


Q ss_pred             HHHHHHHHHHcCCCCCCCCCcCCCCcceeeeeEEcCCCeeechHhh-hh-hCCCCCeEEEeccEEEEEEEcCCCCCCCce
Q 009873          180 QSVVEFGLLEAGILPYNGYSLEHIEGTKIGGTAFDQCGKRHTSADL-LE-AGNPKNLVVLLNATVNNIIFSNNGKANESR  257 (523)
Q Consensus       180 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-l~-~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~  257 (523)
                      ...+.++..++|++....+......+.+......+ .|.|+++... +. +.+++|++|++++.|++|+++++      |
T Consensus       163 ~~a~~~a~~~~G~~~~~~~~~~~~~g~g~~~~~~~-~g~r~sa~~a~l~~a~~~~nl~v~t~a~v~ri~~~~~------r  235 (542)
T COG2303         163 ARAFIEAGEQLGFPTTPDPNGADQEGFGPYCVTIC-NGRRWSAARAYLKPALKRPNLTLLTGARVRRILLEGD------R  235 (542)
T ss_pred             HHHHHHHHHHcCCCcCcccccCCCCCcccceeecc-CCeEeechhhcchhHhcCCceEEecCCEEEEEEEECC------e
Confidence            67777777888986554443333334333333444 7888877654 55 68899999999999999999998      9


Q ss_pred             eeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHhhCCCChhhhhhCCCCceecCcccccccccCcC
Q 009873          258 AHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSGIGPHDHLKDLNIPTIVDLQEVGEGMQDNPC  337 (523)
Q Consensus       258 v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~SGig~~~~l~~~gi~~~~~~p~vG~~l~dh~~  337 (523)
                      ++||++...++.+  .....+        ++.||||||+++||+|||+||+|+.+++..+|+.++.++|.||+||+||..
T Consensus       236 ~~gv~~~~~~~~~--~~~~~a--------~~~viL~AGai~Sp~LL~~Sgig~~~~~~~~g~~~v~~~~~vg~nl~dH~~  305 (542)
T COG2303         236 AVGVEVEIGDGGT--IETAVA--------AREVVLAAGAINSPKLLLLSGIGPADHLLEHGIDVVGRLPGVGQNLQDHLE  305 (542)
T ss_pred             eEEEEEEeCCCCc--eEEEec--------CceEEEeccccCCHHHHHhcCCCchhhhhhcCCeeeecCcchhHHHHhhhh
Confidence            9999998754420  123333        699999999999999999999999999999999999999999999999998


Q ss_pred             ceEEEecCCCCCCC---CCcce---------------------eeeeecCC----------------------CCCCccc
Q 009873          338 IAKLVDTMPQKRLP---EPPEV---------------------VAGVLPIS----------------------SNASRMP  371 (523)
Q Consensus       338 ~~~~~~~~~~~~~~---~~~~~---------------------~g~~~~~~----------------------~~~~~~~  371 (523)
                      ..+.+.........   .+...                     .+ |+...                      .....++
T Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~g-f~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  384 (542)
T COG2303         306 IYVAFEATEPTNDSVLSLFSKLGIGADRYLLTRDGPGATNHFEGG-FVRSGPAGEYPDGQYHFAPLPLAIRAAGAEHGFT  384 (542)
T ss_pred             hhhheeccCccccccccccccccccceeEEeecCCCccccccccc-ccccCccccCCCcccccccccccccccccCCccE
Confidence            87765332221000   00000                     01 11000                      0011234


Q ss_pred             EEeeecCcCcceEEEecCCCCCCCCeeecCCCCChhhHHHHHHHHHHHHHHhcccccccccCCCCCCC-CCCCHHHHHHH
Q 009873          372 IAAKLAFPISKGKLELDSTDPRQNPSIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSFLGIKPQEK-LMSNSDELRKL  450 (523)
Q Consensus       372 ~~~~~~~p~s~g~v~l~~~d~~~~p~i~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  450 (523)
                      +.....+|.++|.|.++..|+...|.|+++|..++.|++.+..+.+..++++.+..+..+...+..|. ...+++++..|
T Consensus       385 ~~~~~~rp~srg~v~~~~~d~~~~p~i~~~~~~~~~d~~~~~~~~~~~r~i~~~~~~~~~~~~e~~~~~~~~~~~~~~~~  464 (542)
T COG2303         385 LHVGPMRPKSRGSVTLRSPDPDNRPVIDPNYLSAEGDRAIFRAGIRLTREIIGQPALDARRKAELAPGPRVTTDEDISAA  464 (542)
T ss_pred             EeeccCCCccccceecCCCCCcCCcccCccccCchhHHHHHHHHHHHHHHHhcCccchhhHHHhhcCCCccccHHHHHHH
Confidence            55666799999999999999999999999999999999999999999999999776666665565553 55677789999


Q ss_pred             HHcccccccccccceecc-----cccCCCCcEeccCCcEEeeccccCCCCCCCcHHHHHHHHHHHHHHHHHH
Q 009873          451 CKNNVRTFYHYHGGCIVG-----SVVDKDYRVYGVKGLRVIDGSTFQESPGTNPMATVMMLGRYQGVKLVEE  517 (523)
Q Consensus       451 ~~~~~~~~~H~~Gt~~MG-----~VvD~~~rv~g~~nL~V~D~Sv~P~~~~~nPtlTi~Ala~r~a~~i~~~  517 (523)
                      ++....+.+|++|||+||     +|+|++|||||++||||+|+|+||+++++||++|++|||+|+|++|+++
T Consensus       465 ~~~~~~t~~H~~GT~rMG~Dp~~~V~d~~lrv~g~~nL~VvDaSvmPt~~~~Np~~ti~ala~raA~~I~~~  536 (542)
T COG2303         465 IRFLARTAYHPMGTCRMGSDPAAVVDDPYLRVHGLENLRVVDASVMPTSTGVNPNLTIIALAERAADHILGD  536 (542)
T ss_pred             HHhccCccccccccccCCCCchhhccccccccccCCCeEEeCcccCcCccCCCccHhHHHHHHHHHHHHhhc
Confidence            999999999999999999     4555999999999999999999999999999999999999999999974

>TIGR02462 pyranose_ox pyranose oxidase

Probab=100.00  E-value=3.5e-49  Score=409.12  Aligned_cols=420  Identities=17%  Similarity=0.147  Sum_probs=275.1

Q ss_pred             ccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCCCCC----Cc------cccchhc----cccCCCC-----------
Q 009873           54 FDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPFGNP----LV------TDKRFFG----FSLLQTD-----------  107 (523)
Q Consensus        54 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~~~~----~~------~~~~~~~----~~~~~~~-----------  107 (523)
                      |||||||+|++|+++|+.|++ |++|+|||+|.......    ..      .....+.    ..+...+           
T Consensus         1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (544)
T TIGR02462         1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFLKIGAHKKNEIEYQKDIDKFVNVIKGALQSVSVPVSNLVIPTL   80 (544)
T ss_pred             CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCCcccccccccccccccHHHHHHHHhhhccccccccccCCcCCC
Confidence            799999999999999999998 89999999997543210    00      0011110    0000000           


Q ss_pred             ---CCccccccCcC----------CCcee-ecCceecccccccCCccccCCChhhHhh--CCCC--HHHHHHHhHhhhcc
Q 009873          108 ---EYTSVAQSFIS----------TDGVQ-NHRGRVLGGSSAINGGFYSRAREDFVKK--AGWD--EELVKKAYEWVESK  169 (523)
Q Consensus       108 ---~~~~~~~~~~~----------~~~~~-~~~g~~lGG~s~~~~~~~~r~~~~~~~~--~~w~--~~~~~~~~~~~~~~  169 (523)
                         .+...+..+..          ..++. ..+.+.+||+|.+|++.++|..++....  .+||  ++++++||+++|+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~R~vGGsS~hW~g~~~R~~p~~r~g~~~dWPI~y~eL~PyY~~Ae~~  160 (544)
T TIGR02462        81 DPTAWSASIESFFVSNGKNPEQDPFRNLSGEAVTRGVGGMSTHWTCATPRFHREERPKLSDDAAEDDAEWDRLYTKAESL  160 (544)
T ss_pred             CccccccCCCcceecCCCCcccCchhccChhheeeccCchhhhcCcccCCCCHHhccCCCCCCCCCHHHHHHHHHHHHHH
Confidence               00000000000          01122 3577899999999999999987643221  3576  69999999999999


Q ss_pred             ccCCCCC-------ChhHHHHHHHHHHcCC-CCCCCCCcCCCCcceeeeeEEcCCCeeechH-hhhh-h----CCCCCeE
Q 009873          170 VVFPPEL-------TPWQSVVEFGLLEAGI-LPYNGYSLEHIEGTKIGGTAFDQCGKRHTSA-DLLE-A----GNPKNLV  235 (523)
Q Consensus       170 ~~~~p~~-------~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~l~-~----~~~~g~~  235 (523)
                      +++.+..       ....+.+.+.+.  |. .....    ... +..  + -|+.+.+++.. ..+. +    .++.|++
T Consensus       161 ~gv~g~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~----PlA-~~~--~-~c~~~ak~s~~~t~~~~~~~~~~~~~n~~  230 (544)
T TIGR02462       161 IGTSTDQFDESIRHNLVLRKLQDEYK--GQRDFQPL----PLA-CHR--R-TDPTYVEWHSADTVFDLQPNDDAPSERFT  230 (544)
T ss_pred             hCCCCCcCCCcccchhHHHHHHHHhc--cccccccC----chh-hhc--c-CCCccceecCCccchhhhhhhhccCCCEE
Confidence            8776521       111112222221  22 11110    000 000  0 12335555432 2232 2    2478899


Q ss_pred             EEeccEEEEEEEcCCCCCCCceeeEEEEEec-CCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHhhCCCChhhh
Q 009873          236 VLLNATVNNIIFSNNGKANESRAHGIRFIKS-DGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSGIGPHDHL  314 (523)
Q Consensus       236 i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~-~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~SGig~~~~l  314 (523)
                      |++++.|++|++++++..   +|++|++.+. +|+   .++++|         +.||||||+++||||||+|+++.....
T Consensus       231 l~~~a~v~~i~~d~~~~~---~v~~v~~~d~~~g~---~~~v~A---------~~vVLAagaIetpRLLL~S~~~~~~~p  295 (544)
T TIGR02462       231 LLTNHRCTRLVRNETNES---EIEAALVRDLLSGD---RFEIKA---------DVYVLACGAVHNPQILVNSGFGQLGRP  295 (544)
T ss_pred             EEcCCEEEEEEeCCCCCc---eeEEEEEEECCCCc---EEEEEC---------CEEEEccCchhhHHHHHhCCCCCCcCC
Confidence            999999999999875411   8999999986 477   778887         999999999999999999998752211


Q ss_pred             hhCCCCceec--CcccccccccCcCceEEEecCCCCCC----C----CC-c-----ceeee--------ee-c-------
Q 009873          315 KDLNIPTIVD--LQEVGEGMQDNPCIAKLVDTMPQKRL----P----EP-P-----EVVAG--------VL-P-------  362 (523)
Q Consensus       315 ~~~gi~~~~~--~p~vG~~l~dh~~~~~~~~~~~~~~~----~----~~-~-----~~~g~--------~~-~-------  362 (523)
                      ..    +...  ++.||+|||||+...+......+...    .    .+ .     ...++        |. +       
T Consensus       296 ~g----l~Nss~~g~VGRnlmdh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  371 (544)
T TIGR02462       296 DP----TNPPPLLPSLGRYITEQSMTFCQIVLSTELVDSVRSDPRGLDWWKEKVANHMMKHPEDPLPIPFRDPEPQVTTP  371 (544)
T ss_pred             CC----cCCCCCCCCCCcchhcCCCccEEEEecchhhhhccCCccccccccccchhhhccccCCcccccccccCcccccc
Confidence            11    1122  37899999999987665433211000    0    00 0     00000        10 0       


Q ss_pred             ---C-CCCCC----c---------------cc-EEeeecCcCcceEEEecC--CCCCCCCeeecCCCCChhhHHHHHHHH
Q 009873          363 ---I-SSNAS----R---------------MP-IAAKLAFPISKGKLELDS--TDPRQNPSIKFNYLAKEKDLHECVKMV  416 (523)
Q Consensus       363 ---~-~~~~~----~---------------~~-~~~~~~~p~s~g~v~l~~--~d~~~~p~i~~~~~~~~~D~~~~~~~~  416 (523)
                         . .|+..    .               .. .+.....|..+|+|+|++  +|.+|.|+++++|..+++|.+.+..+.
T Consensus       372 ~~~~~~w~~~~~~~~~~~g~~~~~~~~~~~v~l~~~~e~lP~~~NrV~Ld~~~~D~~G~P~~~i~~~~~~~d~~~~~~~~  451 (544)
T TIGR02462       372 FTEEHPWHTQIHRDAFSYGAVGPSIDSRVIVDLRFFGRTEPKEENKLVFQDKVTDTYNMPQPTFDFRFSAADSKRARRMM  451 (544)
T ss_pred             cccccccchhhhhhhhhcccccccccccceeeEEEEeccCCCCCCeEEcCCCCcCCCCCeeEEEEEeCCHHHHHHHHHHH
Confidence               0 00000    0               00 123445799999999976  599999999999999999999999999


Q ss_pred             HHHHHHhcccccccccCCCCCCCCCCCHHHHHHHHHcccccccccccceecc-----cccCCCCcEeccCCcEEeecccc
Q 009873          417 QLLDKVTKSQSVSSFLGIKPQEKLMSNSDELRKLCKNNVRTFYHYHGGCIVG-----SVVDKDYRVYGVKGLRVIDGSTF  491 (523)
Q Consensus       417 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gt~~MG-----~VvD~~~rv~g~~nL~V~D~Sv~  491 (523)
                      +.+.++++.++.....  .. +          .+  ...+.+.|++||||||     +|||++|||||++||||+|+|+|
T Consensus       452 ~~~~~i~~~~G~~~~~--~~-~----------~~--~~~~~~~H~~Gt~rMG~dp~~sVvd~~~rv~g~~NL~V~d~s~~  516 (544)
T TIGR02462       452 TDMCNVAAKIGGYLPG--SL-P----------QF--MEPGLALHLAGTTRIGFDEQTTVANTDSKVHNFKNLYVGGNGNI  516 (544)
T ss_pred             HHHHHHHHHcCCCccc--cc-c----------cc--cCCCccccCCCCeecCCCCCCceECCCCcEeCCCCeEEeccCcC
Confidence            9999999988753211  00 0          00  1124578999999999     89999999999999999999999


Q ss_pred             CCCCCCCcHHHHHHHHHHHHHHHHHH
Q 009873          492 QESPGTNPMATVMMLGRYQGVKLVEE  517 (523)
Q Consensus       492 P~~~~~nPtlTi~Ala~r~a~~i~~~  517 (523)
                      |+++++|||+|+||+|+|+|++|+++
T Consensus       517 Pt~~~~nPtlTi~ala~r~a~~i~~~  542 (544)
T TIGR02462       517 PTAFGANPTLTSMCYAIKSAEYIINN  542 (544)
T ss_pred             CCCCCCCcHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999875

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=100.00  E-value=2.4e-41  Score=334.16  Aligned_cols=267  Identities=36%  Similarity=0.521  Sum_probs=185.2

Q ss_pred             ccEEEECCCCchHHHHhhhhc-c-CeeEEEecCCCCCCCCCccccchhcccc-CCCCCCccccccCcCCCceeecCceec
Q 009873           54 FDYIVVGGGTTGCPLAATLSD-N-FSVLLVERGGSPFGNPLVTDKRFFGFSL-LQTDEYTSVAQSFISTDGVQNHRGRVL  130 (523)
Q Consensus        54 ~DvIIVGsG~aG~~~A~~Lae-g-~~VlvlE~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~l  130 (523)
                      |||||||||++|+++|.+|++ + .+|||||+|+.............+.... .....+.+.++.....+.+.+.+|++|
T Consensus         1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l   80 (296)
T PF00732_consen    1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYPPEDSTPPSSFYQDFDSEYDWGYYSGPQPFLNGRTINWPRGKGL   80 (296)
T ss_dssp             EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCTTSGHHGGGGGGGCTTTTTBBGEEECEEECTTTTSEEEEEB-ST
T ss_pred             CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCccccchhhhccccccCcccccccccccccccccceeeeecceec
Confidence            899999999999999999999 5 7999999998654433100000010000 011123344555666677778899999


Q ss_pred             ccccccCCccccCCChhhHhh-------CCCCHHHHHHHhHhhhccc-------------cC---CCCCChhHHHHHHHH
Q 009873          131 GGSSAINGGFYSRAREDFVKK-------AGWDEELVKKAYEWVESKV-------------VF---PPELTPWQSVVEFGL  187 (523)
Q Consensus       131 GG~s~~~~~~~~r~~~~~~~~-------~~w~~~~~~~~~~~~~~~~-------------~~---~p~~~~~~~~~~~~~  187 (523)
                      ||+|.+|++++.|+++.++++       .+|+++++.++|+++|...             ..   .+...+..+.+.+++
T Consensus        81 GGsS~in~~~~~R~~~~df~~w~~~~g~~~w~~~~l~~~~~~~e~~~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~a~  160 (296)
T PF00732_consen   81 GGSSAINGGVYFRPSPSDFDEWAREFGADGWSWDDLEPYYDKAETFLGPSSDLHGVDGPLPVSSSPPYPSPMNQALMDAA  160 (296)
T ss_dssp             TGGGGTS--BE-B--HHHHHHHHHTTTCTTGSHHHHHHHHHHHEEEHTTBGGGSCBSSSEEEHHHCSCHCTHHHHHHHHH
T ss_pred             CCcccccccccccCCcccchhhhhcccccccchhhHHHHHHHHHhhccccccccccccccccccccCCCCHHHHHHHHHH
Confidence            999999999999998866553       3588999999999999332             22   224456678888999


Q ss_pred             HHcCCCCCCCCCcCCCCcceeeeeEEcCCCeeechHh-hhh-hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEe
Q 009873          188 LEAGILPYNGYSLEHIEGTKIGGTAFDQCGKRHTSAD-LLE-AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIK  265 (523)
Q Consensus       188 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~l~-~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~  265 (523)
                      .+.|++...........+.+...+ .|+.|.|+++.. +|+ +.+++|++|+++|+|++|++++++.    +++||++.+
T Consensus       161 ~~~G~~~~~~~~~~~~~g~~~~~~-~~~~g~r~s~~~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~----~a~gV~~~~  235 (296)
T PF00732_consen  161 EELGIPVPQDFNGCDPCGFCMTGF-NCPNGARSSAATTYLPPALKRPNLTLLTNARVTRIIFDGDGG----RATGVEYVD  235 (296)
T ss_dssp             HHTTHHBCSCTTSSTCSEEEECEE-CECTTCBBHHHHHHHHHHTTTTTEEEEESEEEEEEEEETTST----EEEEEEEEE
T ss_pred             HHcCCccccccccccccccccccc-cccchhceehhhcccchhhccCCccEEcCcEEEEEeeecccc----ceeeeeeee
Confidence            999986222222233333333222 477898887654 465 6677799999999999999974443    999999998


Q ss_pred             cCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHhhCCCChhhhhhCCCCceecCcccccccccCc
Q 009873          266 SDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSGIGPHDHLKDLNIPTIVDLQEVGEGMQDNP  336 (523)
Q Consensus       266 ~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~SGig~~~~l~~~gi~~~~~~p~vG~~l~dh~  336 (523)
                      .++. ...+.+.         +|.||||||+++||+|||+||||+.++|+++||+++.++| ||+|||||+
T Consensus       236 ~~~~-~~~~~~~---------ak~VIlaAGai~Tp~LLl~SGiG~~~~L~~~gi~~~~~lp-VG~nl~dH~  295 (296)
T PF00732_consen  236 NDGG-VQRRIVA---------AKEVILAAGAIGTPRLLLRSGIGPKDHLDALGIPVVVDLP-VGRNLQDHP  295 (296)
T ss_dssp             TTTS-EEEEEEE---------EEEEEE-SHHHHHHHHHHHTTEE-HHHHHHTTHHHSEE-T-TTECEB--E
T ss_pred             cCCc-ceeeecc---------ceeEEeccCCCCChhhhcccccccHHHHHHcCCCceeeCc-chhchhccc
Confidence            6543 0023344         5999999999999999999999999999999999999999 999999997

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>PF05199 GMC_oxred_C: GMC oxidoreductase; InterPro: IPR007867 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=99.97  E-value=1.1e-31  Score=235.65  Aligned_cols=131  Identities=35%  Similarity=0.554  Sum_probs=109.1

Q ss_pred             cCcceEEEecCCCCCCCCeeecCCCCChhhHHHHHHHHHHHHHHhcccccccccC-----CC--CC-CCCCCCHHHHHHH
Q 009873          379 PISKGKLELDSTDPRQNPSIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSFLG-----IK--PQ-EKLMSNSDELRKL  450 (523)
Q Consensus       379 p~s~g~v~l~~~d~~~~p~i~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~-----~~--~~-~~~~~~~~~~~~~  450 (523)
                      |.|+|+|+|+++|+++.|.|+++|+.++.|++.+.++++.+++++... ++.+..     ..  .. .....+++++++|
T Consensus         1 P~S~G~V~L~~~d~~~~p~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (144)
T PF05199_consen    1 PKSRGRVTLDSSDPFGQPLIDPNYLSDPRDLEALREGIKRARRILRAA-FEEIGAGELLPGPSPFCPDASLDSDEDLECY   79 (144)
T ss_dssp             -SS-BEEEESSSSTTSEEEEE--TTSSHHHHHHHHHHHHHHHHHHTSG-GGGTEEEEEESCGCSCCGCSTTTCHHHHHHH
T ss_pred             CCCCcEEEeCCCCCCCCcEEEeCCCCCHHHHHHHHHHHHHHHHHHhhh-hcccccccccccccccccccccccchhhhhh
Confidence            789999999999999999999999999999999999999999999998 544421     11  11 1245677899999


Q ss_pred             HHcccccccccccceecc-----cccCCCCcEeccCCcEEeeccccCCCCCCCcHHHHHHHHHHH
Q 009873          451 CKNNVRTFYHYHGGCIVG-----SVVDKDYRVYGVKGLRVIDGSTFQESPGTNPMATVMMLGRYQ  510 (523)
Q Consensus       451 ~~~~~~~~~H~~Gt~~MG-----~VvD~~~rv~g~~nL~V~D~Sv~P~~~~~nPtlTi~Ala~r~  510 (523)
                      ++....+.+|++|||+||     +|||++|||||++||||+|+|+||+++++||++|+||+|+|+
T Consensus        80 ~~~~~~~~~H~~Gt~~mG~~~~~~VvD~~~rv~g~~nL~V~DaSv~P~~~~~np~~t~~ala~ra  144 (144)
T PF05199_consen   80 IRQNVGTSWHPSGTCRMGPDPDTSVVDPDLRVHGVRNLRVADASVFPTSPGANPTLTIMALAERA  144 (144)
T ss_dssp             HHHHGEECSS-BETT-BTSSTTTTSB-TTSBBTTSBSEEE-SGGGSSS-SSSSSHHHHHHHHHHH
T ss_pred             eeeccceecccccceeccccCCceeECCCCCeeeeeeEEECCCCcCCCCCCcCcHHHHHHHeeCC
Confidence            999999999999999999     999999999999999999999999999999999999999995

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. The function of this C-terminal conserved domain is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0055114 oxidation-reduction process; PDB: 3BG7_F 2IGM_D 3BLY_A 3BG6_H 3LSK_A 2IGO_A 3K4B_A 3K4L_B 2IGN_B 3K4M_H ....

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=99.73  E-value=6.8e-17  Score=170.57  Aligned_cols=193  Identities=18%  Similarity=0.227  Sum_probs=110.7

Q ss_pred             ccccCCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCCCCCCccccchhccccCCCCCCccccccCcCCCceeec
Q 009873           47 KEVAGKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEYTSVAQSFISTDGVQNH  125 (523)
Q Consensus        47 ~~~~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (523)
                      +..++.++||||||+|.+|+++|+++++ |++|+||||.+                                        
T Consensus        55 ~~~~~~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~----------------------------------------   94 (506)
T PRK06481         55 PSELKDKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMP----------------------------------------   94 (506)
T ss_pred             CccccccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCC----------------------------------------
Confidence            3456679999999999999999999999 99999999997                                        


Q ss_pred             CceecccccccCCccccCCChhhHhhCCCCHHHHHHHhHhhhccccCC--CCC----ChhHHHHHHHHHHcCCCCCCCCC
Q 009873          126 RGRVLGGSSAINGGFYSRAREDFVKKAGWDEELVKKAYEWVESKVVFP--PEL----TPWQSVVEFGLLEAGILPYNGYS  199 (523)
Q Consensus       126 ~g~~lGG~s~~~~~~~~r~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~--p~~----~~~~~~~~~~~~~~g~~~~~~~~  199 (523)
                         .+||+|....+.+......++...+.. +..+++++...+.....  +++    ........+++.+.|++ +....
T Consensus        95 ---~~GG~s~~s~Gg~~~~~~~~~~~~g~~-d~~~~~~~~~~~~~~~~~d~~l~~~~~~~s~~~i~wl~~~Gv~-~~~~~  169 (506)
T PRK06481         95 ---VAGGNTMKASSGMNASETKFQKAQGIA-DSNDKFYEETLKGGGGTNDKALLRYFVDNSASAIDWLDSMGIK-LDNLT  169 (506)
T ss_pred             ---CCCCcccccCCccccCChHHHHhcCCC-CCHHHHHHHHHHhcCCCCCHHHHHHHHhccHHHHHHHHHcCce-Eeecc
Confidence               446666555554443333333322221 11122333222111110  100    00122345677777763 11100


Q ss_pred             cCCCCcceeeeeEEcCCCeee--chHh-hhhhCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEE
Q 009873          200 LEHIEGTKIGGTAFDQCGKRH--TSAD-LLEAGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEA  276 (523)
Q Consensus       200 ~~~~~~~~~~~~~~~~~g~~~--~~~~-~l~~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i  276 (523)
                      ..  .+...........+...  .... +...+++.|++|++++.|++|+.+++      +|+||++...+++   ..++
T Consensus       170 ~~--~g~~~~r~~~p~~g~~~g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~g------~V~Gv~~~~~~g~---~~~i  238 (506)
T PRK06481        170 IT--GGMSEKRTHRPHDGSAVGGYLVDGLLKNVQERKIPLFVNADVTKITEKDG------KVTGVKVKINGKE---TKTI  238 (506)
T ss_pred             cC--CCCCCCceeccCCCCCChHHHHHHHHHHHHHcCCeEEeCCeeEEEEecCC------EEEEEEEEeCCCe---EEEE
Confidence            00  00000000111111110  1111 23355678999999999999987655      8999998765555   5667


Q ss_pred             EecCCCCCCCCCcEEEecCCchhHHHHH
Q 009873          277 YLNKPGNSSTWGDVILSAGALGSPQLLL  304 (523)
Q Consensus       277 ~a~~~~~~~~~~~VILaaGa~~tp~lLl  304 (523)
                      .+         +.||||+|++..+.-++
T Consensus       239 ~a---------~~VVlAtGG~~~n~~m~  257 (506)
T PRK06481        239 SS---------KAVVVTTGGFGANKDMI  257 (506)
T ss_pred             ec---------CeEEEeCCCcccCHHHH
Confidence            76         99999999998654433

>PRK07121 hypothetical protein; Validated

Probab=99.66  E-value=8.4e-16  Score=162.26  Aligned_cols=208  Identities=18%  Similarity=0.210  Sum_probs=117.9

Q ss_pred             CCCcccccccccccCCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCCCCCCccccchhccccCCCCCCcccccc
Q 009873           37 EVPYYMTSDVKEVAGKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEYTSVAQS  115 (523)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (523)
                      +.|++........++.++||||||+|.+|+++|++|++ |++|+||||..                              
T Consensus         4 ~~~~~~~~~~~~~~~~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~------------------------------   53 (492)
T PRK07121          4 DIPRPVSAEDVTSWDDEADVVVVGFGAAGACAAIEAAAAGARVLVLERAA------------------------------   53 (492)
T ss_pred             CCCccCCCccccccCCccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC------------------------------
Confidence            44444433444455789999999999999999999999 99999999987                              


Q ss_pred             CcCCCceeecCceecccccccCCccccCC-ChhhHhhCCC--CHHHHHHHhHhhhccccCCCCC----ChhHHHHHHHHH
Q 009873          116 FISTDGVQNHRGRVLGGSSAINGGFYSRA-REDFVKKAGW--DEELVKKAYEWVESKVVFPPEL----TPWQSVVEFGLL  188 (523)
Q Consensus       116 ~~~~~~~~~~~g~~lGG~s~~~~~~~~r~-~~~~~~~~~w--~~~~~~~~~~~~~~~~~~~p~~----~~~~~~~~~~~~  188 (523)
                                   .+||+|.+.++.++.. ....+...+.  +.+.+.+++.+..... ..+++    ........+++.
T Consensus        54 -------------~~gG~s~~sgG~~~~~~g~~~q~~~g~~d~~~~~~~~~~~~~~~~-~d~~l~~~~~~~s~~~i~wl~  119 (492)
T PRK07121         54 -------------GAGGATALSGGVIYLGGGTAVQKAAGFEDSPENMYAYLRVAVGPG-VDEEKLRRYCEGSVEHFDWLE  119 (492)
T ss_pred             -------------CCCCcccccCeEEEeCCCcHHHHhcCCCCCHHHHHHHHHHHhCCC-CCHHHHHHHHHccHHHHHHHH
Confidence                         4577777776655432 2233322232  2233333332221110 00110    011233456677


Q ss_pred             HcCCCCCCCC----C-cC------CCCcc----ee--------eeeEEcCCCe---eechHhhh-hhCCCCCeEEEeccE
Q 009873          189 EAGILPYNGY----S-LE------HIEGT----KI--------GGTAFDQCGK---RHTSADLL-EAGNPKNLVVLLNAT  241 (523)
Q Consensus       189 ~~g~~~~~~~----~-~~------~~~~~----~~--------~~~~~~~~g~---~~~~~~~l-~~~~~~g~~i~~~~~  241 (523)
                      +.|++.....    . ++      ...+.    ..        ........+.   .......| ..+++.|++|+++++
T Consensus       120 ~~Gv~f~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~L~~~~~~~gv~i~~~~~  199 (492)
T PRK07121        120 GLGVPFERSFFPEKTSYPPNDEGLYYSGNEKAWPFAEIAKPAPRGHRVQGPGDSGGGAMLMDPLAKRAAALGVQIRYDTR  199 (492)
T ss_pred             HcCcEEEeccCCCcccCCCCCcccccchhhcchhhhhccCCcccceecCCCCCCCchHHHHHHHHHHHHhCCCEEEeCCE
Confidence            7775311100    0 00      00000    00        0000000010   00111123 356778999999999


Q ss_pred             EEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHh
Q 009873          242 VNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLL  305 (523)
Q Consensus       242 V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~  305 (523)
                      |++|+.++++     +|+||++.+ +++   .+.+.+        ++.||||+|++....-|++
T Consensus       200 v~~l~~~~~g-----~v~Gv~~~~-~~~---~~~i~a--------~k~VVlAtGg~~~N~em~~  246 (492)
T PRK07121        200 ATRLIVDDDG-----RVVGVEARR-YGE---TVAIRA--------RKGVVLAAGGFAMNREMVA  246 (492)
T ss_pred             EEEEEECCCC-----CEEEEEEEe-CCc---EEEEEe--------CCEEEECCCCcCcCHHHHH
Confidence            9999987644     899999865 455   566765        5999999999987555554

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.65  E-value=2.2e-15  Score=160.19  Aligned_cols=77  Identities=31%  Similarity=0.456  Sum_probs=60.6

Q ss_pred             ccccCCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCCCCCCccccchhccccCCCCCCccccccCcCCCceeec
Q 009873           47 KEVAGKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEYTSVAQSFISTDGVQNH  125 (523)
Q Consensus        47 ~~~~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (523)
                      ...++++|||||||+| +|+++|..+++ |++|+||||.+                                        
T Consensus        10 ~~~~d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~----------------------------------------   48 (564)
T PRK12845         10 TPVRDTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSS----------------------------------------   48 (564)
T ss_pred             CCCCCceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCC----------------------------------------
Confidence            3466789999999999 89999999999 99999999986                                        


Q ss_pred             CceecccccccCCccccCCChhhHhhCCC--CHHHHHHHhHhhh
Q 009873          126 RGRVLGGSSAINGGFYSRAREDFVKKAGW--DEELVKKAYEWVE  167 (523)
Q Consensus       126 ~g~~lGG~s~~~~~~~~r~~~~~~~~~~w--~~~~~~~~~~~~~  167 (523)
                         .+||++.++++.++.+....+...+.  +.+++.+|+.+..
T Consensus        49 ---~~GG~~~~~gG~~~~~~~~~~~~~g~~ds~e~~~~y~~~~~   89 (564)
T PRK12845         49 ---YVGGSTARSGGAFWLPASPVLDEAGAGDTLERARTYLDSVV   89 (564)
T ss_pred             ---CCcCcccCcCCCEecCChHHHHHhCcchhHHHHHHHHHHHh
Confidence               67999999988888777666655543  3355555555443

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.63  E-value=3.4e-15  Score=159.69  Aligned_cols=61  Identities=16%  Similarity=0.187  Sum_probs=49.3

Q ss_pred             hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHh
Q 009873          228 AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLL  305 (523)
Q Consensus       228 ~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~  305 (523)
                      .+++.|++|++++.|++|+.++++     +|+||++.. +|+   .+++.+        ++.||||||+|+...-|++
T Consensus       222 ~~~~~gv~i~~~~~~~~Li~d~~g-----~V~Gv~~~~-~~~---~~~i~a--------~~aVilAtGGf~~N~em~~  282 (584)
T PRK12835        222 ALKDAGVPLWLDSPMTELITDPDG-----AVVGAVVER-EGR---TLRIGA--------RRGVILATGGFDHDMDWRK  282 (584)
T ss_pred             HHHhCCceEEeCCEEEEEEECCCC-----cEEEEEEEe-CCc---EEEEEe--------ceeEEEecCcccCCHHHHH
Confidence            567789999999999999998654     899999865 676   677876        4589999999996554443

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=99.62  E-value=9.2e-15  Score=154.69  Aligned_cols=58  Identities=17%  Similarity=0.236  Sum_probs=46.8

Q ss_pred             CCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHH
Q 009873          229 GNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLL  304 (523)
Q Consensus       229 ~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl  304 (523)
                      .++.|++|+++++|++|+.+++      +|+||++.. +|+   .+++++        +|.||||||+++...-|+
T Consensus       184 ~~~~gv~i~~~t~~~~Li~~~g------~v~Gv~~~~-~g~---~~~i~A--------~k~VIlAtGG~~~n~~m~  241 (513)
T PRK12837        184 ARFPNARLRLNTPLVELVVEDG------RVVGAVVER-GGE---RRRVRA--------RRGVLLAAGGFEQNDDMR  241 (513)
T ss_pred             HhCCCCEEEeCCEEEEEEecCC------EEEEEEEEE-CCc---EEEEEe--------CceEEEeCCCccCCHHHH
Confidence            4456999999999999998755      999999865 566   677887        568999999997654444

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.59  E-value=1.5e-14  Score=154.18  Aligned_cols=61  Identities=20%  Similarity=0.318  Sum_probs=49.7

Q ss_pred             hhCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHh
Q 009873          227 EAGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLL  305 (523)
Q Consensus       227 ~~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~  305 (523)
                      ..+++.|++|+++++|++|+.+++      +|+||++.. +|+   .+++.+        ++.||||+|+++...-|+.
T Consensus       216 ~~~~~~gv~i~~~~~v~~Li~~~g------~v~Gv~~~~-~g~---~~~i~A--------~~aVIlAtGG~~~N~em~~  276 (557)
T PRK12844        216 EAALAAGVPLWTNTPLTELIVEDG------RVVGVVVVR-DGR---EVLIRA--------RRGVLLASGGFGHNAEMRK  276 (557)
T ss_pred             HHHHhCCCEEEeCCEEEEEEEeCC------EEEEEEEEE-CCe---EEEEEe--------cceEEEecCCccCCHHHHH
Confidence            356778999999999999999865      999999875 566   667776        5689999999997655543

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=99.57  E-value=1.4e-14  Score=150.23  Aligned_cols=185  Identities=24%  Similarity=0.309  Sum_probs=102.1

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCCCCCCccccchhccccCCCCCCccccccCcCCCceeecCceecccc
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEYTSVAQSFISTDGVQNHRGRVLGGS  133 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lGG~  133 (523)
                      ||||||+|.+|++||++|++ |.||+||||++                                           .+||+
T Consensus         1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~-------------------------------------------~~gg~   37 (417)
T PF00890_consen    1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGP-------------------------------------------RLGGS   37 (417)
T ss_dssp             SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSS-------------------------------------------GGGSG
T ss_pred             CEEEECCCHHHHHHHHHHhhhcCeEEEEEeec-------------------------------------------ccccc
Confidence            89999999999999999999 99999999997                                           56777


Q ss_pred             cccCCccccCCChhhHhhCCCCHHHHHHHhHhhhccccCC--CC----CChhHHHHHHHHHHcCCCCCCCCCcCCCCcce
Q 009873          134 SAINGGFYSRAREDFVKKAGWDEELVKKAYEWVESKVVFP--PE----LTPWQSVVEFGLLEAGILPYNGYSLEHIEGTK  207 (523)
Q Consensus       134 s~~~~~~~~r~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~--p~----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  207 (523)
                      +....+.+.......+...+-. +..+.+++...+.....  ++    +........+++.+.|++ +............
T Consensus        38 ~~~s~g~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~-~~~~~~g~~~~~~  115 (417)
T PF00890_consen   38 SAFSSGGFDAAGTPPQREAGIE-DSPEEFFQDIMAAGGGLNDPDLVRAFVENSPEAIDWLEELGVP-FRRDEDGPFAPTP  115 (417)
T ss_dssp             GGGTCSEEEESSSHSSHHTTTT-CHHHHHHHHHHHHTTT-S-HHHHHHHHHHHHHHHHHHHHTT---B-BGTTSSBCEEE
T ss_pred             cccccCceeeeccccccccccc-ccccccceeeecccccccccchhhhhhhcccceehhhhhhccc-ccccccccccccc
Confidence            7776666555443222212110 11222222222221111  10    111233456677777763 2210000000000


Q ss_pred             e-----e-eeEE-cCCC------eeechHhhh-hhCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEe-cCCCCCc
Q 009873          208 I-----G-GTAF-DQCG------KRHTSADLL-EAGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIK-SDGSSNH  272 (523)
Q Consensus       208 ~-----~-~~~~-~~~g------~~~~~~~~l-~~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~-~~g~~~~  272 (523)
                      .     . .... ....      ........+ ..+++.+++|+++++|++|+.+++      +|+||++.+ .+|+   
T Consensus       116 ~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~g------~V~Gv~~~~~~~g~---  186 (417)
T PF00890_consen  116 FGGHSPRWRSPPGNPDPPFGGLGGGKALIEALAKAAEEAGVDIRFNTRVTDLITEDG------RVTGVVAENPADGE---  186 (417)
T ss_dssp             ETTESSTEEEEESSTTSSSHCCCHHHHHHHHHHHHHHHTTEEEEESEEEEEEEEETT------EEEEEEEEETTTCE---
T ss_pred             cCCccccceeeeccccccccccccHHHHHHHHHHHHhhcCeeeeccceeeeEEEeCC------ceeEEEEEECCCCe---
Confidence            0     0 0111 1111      001111123 356677899999999999999877      999999984 3566   


Q ss_pred             eeEEEecCCCCCCCCCcEEEecCCchhHHHH
Q 009873          273 MHEAYLNKPGNSSTWGDVILSAGALGSPQLL  303 (523)
Q Consensus       273 ~~~i~a~~~~~~~~~~~VILaaGa~~tp~lL  303 (523)
                      .+++++         +.||||+|++.. .++
T Consensus       187 ~~~i~A---------~aVIlAtGG~~~-~~~  207 (417)
T PF00890_consen  187 FVRIKA---------KAVILATGGFGG-ELL  207 (417)
T ss_dssp             EEEEEE---------SEEEE----BGG-HHH
T ss_pred             EEEEee---------eEEEeccCcccc-ccc
Confidence            788888         799999999998 443

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=99.55  E-value=4.6e-14  Score=148.31  Aligned_cols=194  Identities=19%  Similarity=0.132  Sum_probs=109.4

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCCCCCCccccchhccccCCCCCCccccccCcCCCceeecCcee
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEYTSVAQSFISTDGVQNHRGRV  129 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  129 (523)
                      ..++||||||+|++|+++|++|++ |.+|+||||++..                                         .
T Consensus         2 ~~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~-----------------------------------------~   40 (466)
T PRK08274          2 ASMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPRE-----------------------------------------W   40 (466)
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCc-----------------------------------------C
Confidence            357999999999999999999999 9999999998621                                         2


Q ss_pred             cccccccCCccccCCChhhH-hhCCCCHHHHHHHhHhhhccccCC--CCC----ChhHHHHHHHHHHcCCCCCCCCCcCC
Q 009873          130 LGGSSAINGGFYSRAREDFV-KKAGWDEELVKKAYEWVESKVVFP--PEL----TPWQSVVEFGLLEAGILPYNGYSLEH  202 (523)
Q Consensus       130 lGG~s~~~~~~~~r~~~~~~-~~~~w~~~~~~~~~~~~~~~~~~~--p~~----~~~~~~~~~~~~~~g~~~~~~~~~~~  202 (523)
                      .||+|.+.+++......... ....++.++   +++++.+.....  +++    ..-.....+++.+.|++-.....  .
T Consensus        41 ~GG~s~~s~G~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~wl~~~Gv~~~~~~~--~  115 (466)
T PRK08274         41 RGGNSRHTRNLRCMHDAPQDVLVGAYPEEE---FWQDLLRVTGGRTDEALARLLIRESSDCRDWMRKHGVRFQPPLS--G  115 (466)
T ss_pred             CCcccccCCceeeeCCCchhhccccccHHH---HHHHHHHhhCCCCCHHHHHHHHHcCHHHHHHHHhCCceEeecCC--C
Confidence            45666555552221111000 001112222   222222211111  100    00112345667777763111000  0


Q ss_pred             CCcceeeeeEEcCCCeeechHhhhhhCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCC
Q 009873          203 IEGTKIGGTAFDQCGKRHTSADLLEAGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPG  282 (523)
Q Consensus       203 ~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~  282 (523)
                      ..........+...| ......+...+++.|++|+++++|++|+.+++      +|+||++.+.+++   ...+.+    
T Consensus       116 ~~~~~~~~~~~~g~g-~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~g------~v~gv~~~~~~g~---~~~i~a----  181 (466)
T PRK08274        116 ALHVARTNAFFWGGG-KALVNALYRSAERLGVEIRYDAPVTALELDDG------RFVGARAGSAAGG---AERIRA----  181 (466)
T ss_pred             ccccCCCCeeecCCH-HHHHHHHHHHHHHCCCEEEcCCEEEEEEecCC------eEEEEEEEccCCc---eEEEEC----
Confidence            000000000111111 11111123356678999999999999998765      8999998654566   566776    


Q ss_pred             CCCCCCcEEEecCCchhHHHHHhhCCC
Q 009873          283 NSSTWGDVILSAGALGSPQLLLLSGIG  309 (523)
Q Consensus       283 ~~~~~~~VILaaGa~~tp~lLl~SGig  309 (523)
                           +.||||+|++.+++.+++.-.+
T Consensus       182 -----~~VIlAtGg~~~n~~~~~~~~~  203 (466)
T PRK08274        182 -----KAVVLAAGGFESNREWLREAWG  203 (466)
T ss_pred             -----CEEEECCCCCCCCHHHHHhhcC
Confidence                 9999999999998877776444

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=99.53  E-value=1.5e-13  Score=146.79  Aligned_cols=35  Identities=40%  Similarity=0.526  Sum_probs=33.0

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      ..++||||||+|.+|+++|+.+++ |++|+||||++
T Consensus         2 ~~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~   37 (549)
T PRK12834          2 AMDADVIVVGAGLAGLVAAAELADAGKRVLLLDQEN   37 (549)
T ss_pred             CccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            368999999999999999999999 89999999996

>PRK06175 L-aspartate oxidase; Provisional

Probab=99.52  E-value=7.6e-14  Score=144.46  Aligned_cols=51  Identities=27%  Similarity=0.427  Sum_probs=41.9

Q ss_pred             CCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchh
Q 009873          230 NPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGS  299 (523)
Q Consensus       230 ~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~t  299 (523)
                      ++.|++|++++.|++|+.+++      +|.||.+.+ +++   .+.+.+         +.||||+|+++.
T Consensus       140 ~~~gV~i~~~t~v~~Li~~~~------~v~Gv~~~~-~g~---~~~i~A---------k~VILAtGG~~~  190 (433)
T PRK06175        140 KRKNITIIENCYLVDIIENDN------TCIGAICLK-DNK---QINIYS---------KVTILATGGIGG  190 (433)
T ss_pred             hcCCCEEEECcEeeeeEecCC------EEEEEEEEE-CCc---EEEEEc---------CeEEEccCcccc
Confidence            457999999999999998765      899988765 455   556776         999999999864

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=99.50  E-value=1.9e-13  Score=142.54  Aligned_cols=62  Identities=18%  Similarity=0.309  Sum_probs=48.1

Q ss_pred             hhCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHh
Q 009873          227 EAGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLL  305 (523)
Q Consensus       227 ~~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~  305 (523)
                      ..+++.|++|++++.|++|+.++++     +++||++.+.+++   .+.+.+         +.||||+|++....-|++
T Consensus       138 ~~~~~~gv~i~~~~~v~~l~~~~~g-----~v~Gv~~~~~~g~---~~~~~a---------~~VVlAtGg~~~n~~m~~  199 (439)
T TIGR01813       138 KKAKKEGIDTRLNSKVEDLIQDDQG-----TVVGVVVKGKGKG---IYIKAA---------KAVVLATGGFGSNKEMIA  199 (439)
T ss_pred             HHHHHcCCEEEeCCEeeEeEECCCC-----cEEEEEEEeCCCe---EEEEec---------ceEEEecCCCCCCHHHHH
Confidence            3566789999999999999997654     8999998875554   445565         999999999987544443

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.50  E-value=1.8e-13  Score=146.29  Aligned_cols=53  Identities=15%  Similarity=0.127  Sum_probs=44.2

Q ss_pred             hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecC-CCCCceeEEEecCCCCCCCCCcEEEecCCch
Q 009873          228 AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSD-GSSNHMHEAYLNKPGNSSTWGDVILSAGALG  298 (523)
Q Consensus       228 ~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~-g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~  298 (523)
                      .+.+.|+++++++.+++|+.+++      +|+||.+.+.+ |+   .+.+.+         |.||||+|+++
T Consensus       145 ~~~~~gv~i~~~~~~~~Li~~~g------~v~Gv~~~~~~~g~---~~~i~A---------kaVVLATGG~~  198 (566)
T PRK06452        145 RTSGLNVDFYNEWFSLDLVTDNK------KVVGIVAMQMKTLT---PFFFKT---------KAVVLATGGMG  198 (566)
T ss_pred             HHHhCCCEEEeCcEEEEEEEECC------EEEEEEEEECCCCe---EEEEEe---------CeEEECCCccc
Confidence            44557999999999999999765      99999998743 45   566776         99999999997

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.50  E-value=4.9e-13  Score=142.76  Aligned_cols=61  Identities=18%  Similarity=0.284  Sum_probs=49.6

Q ss_pred             hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHhh
Q 009873          228 AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLS  306 (523)
Q Consensus       228 ~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~S  306 (523)
                      .+++.|++|+++++|++|+.+++      +|+||++.. +++   .+++.+        ++.||||+|++.+..-|+..
T Consensus       217 ~~~~~gv~v~~~t~v~~l~~~~g------~v~Gv~~~~-~g~---~~~i~A--------~~~VIlAtGG~~~n~~m~~~  277 (557)
T PRK07843        217 GLQRAGVPVLLNTPLTDLYVEDG------RVTGVHAAE-SGE---PQLIRA--------RRGVILASGGFEHNEQMRAK  277 (557)
T ss_pred             HHHcCCCEEEeCCEEEEEEEeCC------EEEEEEEEe-CCc---EEEEEe--------ceeEEEccCCcCcCHHHHHH
Confidence            55678999999999999998765      999999865 566   677876        45799999999987666554

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=99.50  E-value=3.2e-13  Score=155.05  Aligned_cols=198  Identities=20%  Similarity=0.193  Sum_probs=110.5

Q ss_pred             ccccccCCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCCCCCCccccchhccccCCCCCCccccccCcCCCcee
Q 009873           45 DVKEVAGKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEYTSVAQSFISTDGVQ  123 (523)
Q Consensus        45 ~~~~~~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (523)
                      ...+....++||||||+|.+|++||+++++ |++|+||||++                                      
T Consensus       401 ~~~i~~t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~--------------------------------------  442 (1167)
T PTZ00306        401 KKRIAGSLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEA--------------------------------------  442 (1167)
T ss_pred             ccccccCCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccC--------------------------------------
Confidence            344556788999999999999999999999 99999999987                                      


Q ss_pred             ecCceecccccccCCccccCCChhhHhhCCCCHHHHHHHhHhhhccc-c--CCCC----CChhHHHHHHHHHHcCCCCCC
Q 009873          124 NHRGRVLGGSSAINGGFYSRAREDFVKKAGWDEELVKKAYEWVESKV-V--FPPE----LTPWQSVVEFGLLEAGILPYN  196 (523)
Q Consensus       124 ~~~g~~lGG~s~~~~~~~~r~~~~~~~~~~w~~~~~~~~~~~~~~~~-~--~~p~----~~~~~~~~~~~~~~~g~~~~~  196 (523)
                           .+||+|.++++.++......+...+.. +..+.+++...... .  ..++    +..-.....+++.+.|++ +.
T Consensus       443 -----~~GG~s~~s~ggi~~~~t~~q~~~gi~-D~~~~~~~d~~~~~~~~~~d~~lv~~~~~~s~e~idwL~~~Gv~-f~  515 (1167)
T PTZ00306        443 -----KLGGNSAKATSGINGWGTRAQAKQDVL-DGGKFFERDTHLSGKGGHCDPGLVKTLSVKSADAISWLSSLGVP-LT  515 (1167)
T ss_pred             -----CCCCchhhcccccccCCchhhhhhccc-ccHHHHHHHHHHhccCCCCCHHHHHHHHHhhHHHHHHHHHcCCC-ce
Confidence                 457777665554444333333222211 11111111111100 0  0111    011123445677777763 21


Q ss_pred             CCCcCCCCcceeeeeEEc---CCCee----echHhhhh-h---CCCCCeEEEeccEEEEEEEcCCC---CCCCceeeEEE
Q 009873          197 GYSLEHIEGTKIGGTAFD---QCGKR----HTSADLLE-A---GNPKNLVVLLNATVNNIIFSNNG---KANESRAHGIR  262 (523)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~---~~g~~----~~~~~~l~-~---~~~~g~~i~~~~~V~~l~~~~~g---~~~~~~v~GV~  262 (523)
                      .....  .+.........   .++..    ......+. .   ..+.|++|++++.|++|+.++++   ++...+|+||+
T Consensus       516 ~~~~~--gg~~~~r~~~~~~~~~g~~~~~G~~i~~~l~~~~~~~~~~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~  593 (1167)
T PTZ00306        516 VLSQL--GGASRKRCHRAPDKKDGTPVPIGFTIMRTLEDHIRTKLSGRVTIMTETTVTSLLSESSARPDGVREIRVTGVR  593 (1167)
T ss_pred             eeecc--CCCCCCceeecCcccCCCcCCcHHHHHHHHHHHHHhhccCCcEEEECCEEEEEEecCCcccCCCccceEEEEE
Confidence            11000  01100001110   01110    01111222 2   23469999999999999997521   00001899999


Q ss_pred             EEec---CCCCCceeEEEecCCCCCCCCCcEEEecCCchhHH
Q 009873          263 FIKS---DGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQ  301 (523)
Q Consensus       263 ~~~~---~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~  301 (523)
                      +.+.   +|+   .+.+.+         |.||||+|+|+...
T Consensus       594 ~~~~~~~~g~---~~~i~A---------kaVILATGGf~~N~  623 (1167)
T PTZ00306        594 YKQASDASGQ---VMDLLA---------DAVILATGGFSNDH  623 (1167)
T ss_pred             EEecccCCCc---EEEEEe---------ceEEEecCCcccCc
Confidence            9875   676   677876         99999999999754

>PRK12839 hypothetical protein; Provisional

Probab=99.49  E-value=1.9e-13  Score=145.85  Aligned_cols=61  Identities=16%  Similarity=0.257  Sum_probs=47.2

Q ss_pred             hhCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHH
Q 009873          227 EAGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLL  304 (523)
Q Consensus       227 ~~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl  304 (523)
                      ..+++.|++|++++.|++|+.++++     +|+||++.+.+|+    .++.+        ++.||||||++....-|+
T Consensus       222 ~~a~~~Gv~i~~~t~v~~Li~~~~g-----~V~GV~~~~~~g~----~~i~a--------ak~VVLAtGGf~~n~~~~  282 (572)
T PRK12839        222 RSADDLGVDLRVSTSATSLTTDKNG-----RVTGVRVQGPDGA----VTVEA--------TRGVVLATGGFPNDVDRR  282 (572)
T ss_pred             HHHHHCCCEEEcCCEEEEEEECCCC-----cEEEEEEEeCCCc----EEEEe--------CCEEEEcCCCcccCHHHH
Confidence            3566789999999999999987544     8999998775554    34444        599999999998754443

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.48  E-value=2.6e-13  Score=146.59  Aligned_cols=54  Identities=17%  Similarity=0.294  Sum_probs=45.4

Q ss_pred             hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEec-CCCCCceeEEEecCCCCCCCCCcEEEecCCchh
Q 009873          228 AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKS-DGSSNHMHEAYLNKPGNSSTWGDVILSAGALGS  299 (523)
Q Consensus       228 ~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~-~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~t  299 (523)
                      .+++.|++|++++.|++|+.+++      +|+||.+.+. +|+   .+.+.+         |.||||||+++.
T Consensus       179 ~~~~~gV~i~~~t~v~~Li~d~g------~V~GV~~~~~~~g~---~~~i~A---------kaVVLATGG~g~  233 (640)
T PRK07573        179 QIAAGTVKMYTRTEMLDLVVVDG------RARGIVARNLVTGE---IERHTA---------DAVVLATGGYGN  233 (640)
T ss_pred             HHHhcCCEEEeceEEEEEEEeCC------EEEEEEEEECCCCc---EEEEEC---------CEEEECCCCccc
Confidence            45678999999999999998765      9999999874 465   566776         999999999986

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.47  E-value=3.2e-13  Score=144.69  Aligned_cols=56  Identities=13%  Similarity=0.178  Sum_probs=45.8

Q ss_pred             hhCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEe-cCCCCCceeEEEecCCCCCCCCCcEEEecCCchh
Q 009873          227 EAGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIK-SDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGS  299 (523)
Q Consensus       227 ~~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~-~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~t  299 (523)
                      ..+.+.|+++++++.|++|+.++++     +|+||.+.+ .+|+   .+.+.+         |.||||||+++.
T Consensus       151 ~~~~~~gi~i~~~~~~~~Li~~~~g-----~v~Gv~~~~~~~g~---~~~i~A---------kaVILATGG~~~  207 (588)
T PRK08958        151 QQNLKNHTTIFSEWYALDLVKNQDG-----AVVGCTAICIETGE---VVYFKA---------RATVLATGGAGR  207 (588)
T ss_pred             HHhhhcCCEEEeCcEEEEEEECCCC-----EEEEEEEEEcCCCc---EEEEEc---------CeEEECCCCccc
Confidence            3556789999999999999986443     999999865 3566   677876         999999999975

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=99.47  E-value=2.4e-13  Score=146.34  Aligned_cols=56  Identities=20%  Similarity=0.388  Sum_probs=45.7

Q ss_pred             hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEec-CCCCCceeEEEecCCCCCCCCCcEEEecCCchhH
Q 009873          228 AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKS-DGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSP  300 (523)
Q Consensus       228 ~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~-~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp  300 (523)
                      .+.+.|++|++++.+++|+.++++     +|.||.+.+. +|+   .+.+.+         |.||||+|+++..
T Consensus       196 ~a~~~gv~i~~~~~~~~Li~~~~g-----~v~Gv~~~~~~~g~---~~~i~A---------kaVILATGG~g~~  252 (635)
T PLN00128        196 QAMKHNTQFFVEYFALDLIMDSDG-----ACQGVIALNMEDGT---LHRFRA---------HSTILATGGYGRA  252 (635)
T ss_pred             HHHhCCCEEEEeeEEEEEEEcCCC-----EEEEEEEEEcCCCe---EEEEEc---------CeEEECCCCCccc
Confidence            455679999999999999987443     9999998763 566   677776         9999999999753

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=99.47  E-value=5.7e-13  Score=142.89  Aligned_cols=61  Identities=16%  Similarity=0.260  Sum_probs=48.7

Q ss_pred             hhCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHh
Q 009873          227 EAGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLL  305 (523)
Q Consensus       227 ~~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~  305 (523)
                      ..+++.|++|++++.|++|+.+++      +|+||++.+ +|+   .+++.+        ++.||||+|+++...-|++
T Consensus       229 ~~~~~~Gv~i~~~t~v~~Li~~~g------~V~GV~~~~-~g~---~~~i~A--------~~~VVlAtGg~~~n~em~~  289 (578)
T PRK12843        229 YSLRARGVRILTQTDVESLETDHG------RVIGATVVQ-GGV---RRRIRA--------RGGVVLATGGFNRHPQLRR  289 (578)
T ss_pred             HHHHhCCCEEEeCCEEEEEEeeCC------EEEEEEEec-CCe---EEEEEc--------cceEEECCCCcccCHHHHH
Confidence            356678999999999999998755      999998875 565   566765        5899999999997655544

>PRK07395 L-aspartate oxidase; Provisional

Probab=99.47  E-value=2.2e-13  Score=144.74  Aligned_cols=37  Identities=30%  Similarity=0.476  Sum_probs=34.0

Q ss_pred             ccCCcccEEEECCCCchHHHHhhhhccCeeEEEecCC
Q 009873           49 VAGKSFDYIVVGGGTTGCPLAATLSDNFSVLLVERGG   85 (523)
Q Consensus        49 ~~~~~~DvIIVGsG~aG~~~A~~Laeg~~VlvlE~G~   85 (523)
                      ..+.++||||||+|.+|++||+++++|.+|+||||++
T Consensus         5 ~~~~e~DVlVVG~G~AGl~AAi~A~~G~~V~lieK~~   41 (553)
T PRK07395          5 ILPSQFDVLVVGSGAAGLYAALCLPSHLRVGLITKDT   41 (553)
T ss_pred             cccccCCEEEECccHHHHHHHHHhhcCCCEEEEEccC
Confidence            3567899999999999999999998799999999997

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=99.46  E-value=3.8e-13  Score=144.83  Aligned_cols=55  Identities=16%  Similarity=0.338  Sum_probs=44.9

Q ss_pred             hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEe-cCCCCCceeEEEecCCCCCCCCCcEEEecCCchh
Q 009873          228 AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIK-SDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGS  299 (523)
Q Consensus       228 ~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~-~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~t  299 (523)
                      .+.+.|++|++++.|++|+.++++     +|.||.+.+ .+|+   .+.+.+         |.||||+|+++.
T Consensus       175 ~a~~~gv~i~~~~~~~~Li~~~~g-----~v~Gv~~~~~~~g~---~~~i~A---------kaVVLATGG~~~  230 (617)
T PTZ00139        175 QSLKYDCNFFIEYFALDLIMDEDG-----ECRGVIAMSMEDGS---IHRFRA---------HYTVIATGGYGR  230 (617)
T ss_pred             HHHhCCCEEEeceEEEEEEECCCC-----EEEEEEEEECCCCe---EEEEEC---------CcEEEeCCCCcc
Confidence            556789999999999999984333     999999865 3566   667776         999999999975

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.46  E-value=4.2e-13  Score=144.28  Aligned_cols=56  Identities=20%  Similarity=0.361  Sum_probs=46.0

Q ss_pred             hhCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEe-cCCCCCceeEEEecCCCCCCCCCcEEEecCCchh
Q 009873          227 EAGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIK-SDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGS  299 (523)
Q Consensus       227 ~~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~-~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~t  299 (523)
                      ..+.+.|++|++++.|++|+.++++     +|+||.+.+ .+|+   .+.+.+         +.||||+|+++.
T Consensus       157 ~~~~~~gi~i~~~~~v~~Li~~~~g-----~v~Gv~~~~~~~g~---~~~i~A---------kaVVLATGG~~~  213 (598)
T PRK09078        157 QQSLKHNAEFFIEYFALDLIMDDGG-----VCRGVVAWNLDDGT---LHRFRA---------HMVVLATGGYGR  213 (598)
T ss_pred             HHHhhcCCEEEEeEEEEEEEEcCCC-----EEEEEEEEECCCCc---EEEEEc---------CEEEECCCCCcc
Confidence            3456789999999999999997643     899999865 3566   677776         999999999985

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.45  E-value=6.4e-13  Score=141.81  Aligned_cols=55  Identities=20%  Similarity=0.341  Sum_probs=45.8

Q ss_pred             hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEe-cCCCCCceeEEEecCCCCCCCCCcEEEecCCchh
Q 009873          228 AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIK-SDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGS  299 (523)
Q Consensus       228 ~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~-~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~t  299 (523)
                      .+++.|++|++++.|++|+.++++     +|+||.+.+ .+|+   .+.+.+         |.||||+|+++.
T Consensus       143 ~~~~~gv~i~~~t~v~~Li~~~~~-----~v~Gv~~~~~~~g~---~~~i~A---------kaVIlATGG~~~  198 (543)
T PRK06263        143 YLIKERIKILEEVMAIKLIVDENR-----EVIGAIFLDLRNGE---IFPIYA---------KATILATGGAGQ  198 (543)
T ss_pred             HHhcCCCEEEeCeEeeeeEEeCCc-----EEEEEEEEECCCCc---EEEEEc---------CcEEECCCCCCC
Confidence            456689999999999999987653     699998876 5676   667776         999999999874

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=99.45  E-value=1.5e-12  Score=139.80  Aligned_cols=60  Identities=13%  Similarity=0.220  Sum_probs=47.1

Q ss_pred             hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHh
Q 009873          228 AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLL  305 (523)
Q Consensus       228 ~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~  305 (523)
                      .+++.|++|++++.|++|+.+++      +|+||++.+.+ .   ...+.+        ++.||||+|++....-++.
T Consensus       223 ~~~~~Gv~i~~~~~v~~l~~~~g------~V~GV~~~~~~-~---~~~i~a--------~k~VVlAtGg~~~n~~~~~  282 (574)
T PRK12842        223 SALDLGIPILTGTPARELLTEGG------RVVGARVIDAG-G---ERRITA--------RRGVVLACGGFSHDLARIA  282 (574)
T ss_pred             HHHhCCCEEEeCCEEEEEEeeCC------EEEEEEEEcCC-c---eEEEEe--------CCEEEEcCCCccchHHHHH
Confidence            56678999999999999998865      99999987633 3   345665        4689999999986655544

>PLN02815 L-aspartate oxidase

Probab=99.45  E-value=5.5e-13  Score=142.35  Aligned_cols=56  Identities=18%  Similarity=0.313  Sum_probs=43.2

Q ss_pred             CCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEec-CCCCCceeEEEecCCCCCCCCCcEEEecCCchh
Q 009873          230 NPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKS-DGSSNHMHEAYLNKPGNSSTWGDVILSAGALGS  299 (523)
Q Consensus       230 ~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~-~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~t  299 (523)
                      +..|++|++++.+++|+.+++++  ..+|+||.+.+. +|+   .+.+.+         |.||||||+++.
T Consensus       167 ~~~~i~i~~~~~~~~Li~~~~g~--~~~v~Gv~~~~~~~g~---~~~i~A---------kaVILATGG~g~  223 (594)
T PLN02815        167 NDPNITFFEHHFAIDLLTSQDGG--SIVCHGADVLDTRTGE---VVRFIS---------KVTLLASGGAGH  223 (594)
T ss_pred             hcCCCEEEeceEhheeeeecCCC--ccEEEEEEEEEcCCCe---EEEEEe---------ceEEEcCCccee
Confidence            45699999999999999875431  014999998753 466   677776         999999999974

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=99.45  E-value=1.7e-12  Score=139.43  Aligned_cols=59  Identities=15%  Similarity=0.211  Sum_probs=47.3

Q ss_pred             hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHH
Q 009873          228 AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLL  304 (523)
Q Consensus       228 ~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl  304 (523)
                      .+++.|++|++++.|++|+.+++      +|+||.+.+ ++.   .+++.+        ++.||||+|++....-++
T Consensus       226 ~a~~~Gv~i~~~t~v~~l~~~~g------~v~GV~~~~-~~~---~~~i~a--------~k~VVlAtGg~~~n~~~~  284 (581)
T PRK06134        226 SAEDLGVRIWESAPARELLREDG------RVAGAVVET-PGG---LQEIRA--------RKGVVLAAGGFPHDPARR  284 (581)
T ss_pred             HHHhCCCEEEcCCEEEEEEEeCC------EEEEEEEEE-CCc---EEEEEe--------CCEEEEcCCCcccCHHHH
Confidence            56778999999999999998755      999999876 344   455665        589999999998765554

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=99.44  E-value=1.1e-12  Score=127.89  Aligned_cols=168  Identities=20%  Similarity=0.266  Sum_probs=103.6

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCCCCCCccccchhccccCCCCCCccccccCcCCCceeecCceec
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEYTSVAQSFISTDGVQNHRGRVL  130 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l  130 (523)
                      +.+||||||+|++|+++|..+++ |.+|+|||+++.....                                     -.+
T Consensus         2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrK-------------------------------------il~   44 (408)
T COG2081           2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRK-------------------------------------ILM   44 (408)
T ss_pred             CcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccce-------------------------------------eEe
Confidence            46899999999999999999999 9999999999733210                                     023


Q ss_pred             ccccccCCccccCCChhhHhhCCCCHHHHHHHhHhhhccccCCCCCChhHHHHHHHHHHcCCCCCCCCCcCCCCcceeee
Q 009873          131 GGSSAINGGFYSRAREDFVKKAGWDEELVKKAYEWVESKVVFPPELTPWQSVVEFGLLEAGILPYNGYSLEHIEGTKIGG  210 (523)
Q Consensus       131 GG~s~~~~~~~~r~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  210 (523)
                      -|++.+|...... ...+....+=....+...+.+..            .+.++++++..|+.-+-.     ..     +
T Consensus        45 sGgGrCN~Tn~~~-~~~~ls~~p~~~~fl~sal~~ft------------~~d~i~~~e~~Gi~~~e~-----~~-----G  101 (408)
T COG2081          45 SGGGRCNFTNSEA-PDEFLSRNPGNGHFLKSALARFT------------PEDFIDWVEGLGIALKEE-----DL-----G  101 (408)
T ss_pred             cCCCCcccccccc-HHHHHHhCCCcchHHHHHHHhCC------------HHHHHHHHHhcCCeeEEc-----cC-----c
Confidence            3444444443222 22222211111122222222221            256788888888742111     11     1


Q ss_pred             eEEcCCCeeechHhh-hhhCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCc
Q 009873          211 TAFDQCGKRHTSADL-LEAGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGD  289 (523)
Q Consensus       211 ~~~~~~g~~~~~~~~-l~~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~  289 (523)
                      ..++...+..+..++ +..+++.|++|+++++|.+|..++.         +..+...+|+     ++++         +.
T Consensus       102 r~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~---------~f~l~t~~g~-----~i~~---------d~  158 (408)
T COG2081         102 RMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDS---------GFRLDTSSGE-----TVKC---------DS  158 (408)
T ss_pred             eecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCc---------eEEEEcCCCC-----EEEc---------cE
Confidence            233332333333343 4578899999999999999998774         2334444564     4787         99


Q ss_pred             EEEecCCchhHHH
Q 009873          290 VILSAGALGSPQL  302 (523)
Q Consensus       290 VILaaGa~~tp~l  302 (523)
                      +|||+|+..-|++
T Consensus       159 lilAtGG~S~P~l  171 (408)
T COG2081         159 LILATGGKSWPKL  171 (408)
T ss_pred             EEEecCCcCCCCC
Confidence            9999999888864

>PRK07804 L-aspartate oxidase; Provisional

Probab=99.43  E-value=9.4e-13  Score=140.13  Aligned_cols=37  Identities=27%  Similarity=0.329  Sum_probs=34.8

Q ss_pred             ccCCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           49 VAGKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        49 ~~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .++.++||||||+|.+|++||+++++ |.+|+||||+.
T Consensus        12 ~~~~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~   49 (541)
T PRK07804         12 GWRDAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAA   49 (541)
T ss_pred             ccccccCEEEECccHHHHHHHHHHHHcCCeEEEEEccC
Confidence            46778999999999999999999999 89999999997

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=99.43  E-value=8.4e-12  Score=124.51  Aligned_cols=54  Identities=24%  Similarity=0.393  Sum_probs=44.6

Q ss_pred             hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCch
Q 009873          228 AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALG  298 (523)
Q Consensus       228 ~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~  298 (523)
                      ..+++|++|+.++.+.+|+.+++.     .+.||.+.+.+++   ...+++         +.||||+|+++
T Consensus       143 v~~~p~I~v~e~~~a~~li~~~~~-----~~~Gv~~~~~~~~---~~~~~a---------~~vVLATGG~g  196 (518)
T COG0029         143 VRNRPNITVLEGAEALDLIIEDGI-----GVAGVLVLNRNGE---LGTFRA---------KAVVLATGGLG  196 (518)
T ss_pred             HhcCCCcEEEecchhhhhhhcCCc-----eEeEEEEecCCCe---EEEEec---------CeEEEecCCCc
Confidence            456699999999999999999873     4559999875445   677886         99999999985

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=99.43  E-value=9.5e-13  Score=142.47  Aligned_cols=54  Identities=13%  Similarity=0.145  Sum_probs=45.8

Q ss_pred             hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEe-cCCCCCceeEEEecCCCCCCCCCcEEEecCCchh
Q 009873          228 AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIK-SDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGS  299 (523)
Q Consensus       228 ~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~-~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~t  299 (523)
                      .+.+.|++|+.++.|++|+.+++      +|.||.+.+ .+|+   .+.+.+         |.||||||+++.
T Consensus       167 ~~~~~gv~i~~~~~~~~Li~~~g------~v~Gv~~~~~~~G~---~~~i~A---------kaVVLATGG~g~  221 (657)
T PRK08626        167 EAIKLGVPVHDRKEAIALIHDGK------RCYGAVVRCLITGE---LRAYVA---------KATLIATGGYGR  221 (657)
T ss_pred             HHHhCCCEEEeeEEEEEEEEECC------EEEEEEEEEcCCCc---EEEEEc---------CeEEECCCcccC
Confidence            56678999999999999998765      999999986 4576   667776         999999999874

>PRK09077 L-aspartate oxidase; Provisional

Probab=99.42  E-value=1.7e-12  Score=138.14  Aligned_cols=35  Identities=26%  Similarity=0.538  Sum_probs=32.7

Q ss_pred             CCcccEEEECCCCchHHHHhhhhccCeeEEEecCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSDNFSVLLVERGG   85 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Laeg~~VlvlE~G~   85 (523)
                      ..++||||||+|.+|+++|++|+++.+|+||||+.
T Consensus         6 ~~~~DVlVVG~G~AGl~AA~~aa~~~~VilveK~~   40 (536)
T PRK09077          6 EHQCDVLIIGSGAAGLSLALRLAEHRRVAVLSKGP   40 (536)
T ss_pred             cccCCEEEECchHHHHHHHHHHHHCCCEEEEeccC
Confidence            46799999999999999999999888999999996

>PRK08071 L-aspartate oxidase; Provisional

Probab=99.41  E-value=1.2e-12  Score=138.31  Aligned_cols=50  Identities=26%  Similarity=0.461  Sum_probs=42.8

Q ss_pred             CCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchh
Q 009873          232 KNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGS  299 (523)
Q Consensus       232 ~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~t  299 (523)
                      .|++|++++.|++|+.+++      ++.||.+.+.+|+   .+.+.+         +.||||+|+++.
T Consensus       142 ~gV~i~~~~~v~~Li~~~g------~v~Gv~~~~~~g~---~~~i~A---------k~VVlATGG~~~  191 (510)
T PRK08071        142 PHVTVVEQEMVIDLIIENG------RCIGVLTKDSEGK---LKRYYA---------DYVVLASGGCGG  191 (510)
T ss_pred             cCCEEEECeEhhheeecCC------EEEEEEEEECCCc---EEEEEc---------CeEEEecCCCcc
Confidence            6999999999999998765      8999998875566   666776         999999999874

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.41  E-value=1.4e-12  Score=139.94  Aligned_cols=55  Identities=18%  Similarity=0.321  Sum_probs=44.4

Q ss_pred             hhCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEe-cCCCCCceeEEEecCCCCCCCCCcEEEecCCchh
Q 009873          227 EAGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIK-SDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGS  299 (523)
Q Consensus       227 ~~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~-~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~t  299 (523)
                      ..+++.|++|++++.|++|+.+++      +|.||...+ .+|+   .+.+.+         +.||||+|+++.
T Consensus       143 ~~~~~~gi~i~~~t~v~~L~~~~g------~v~Gv~~~~~~~g~---~~~i~A---------kaVVlATGG~~~  198 (575)
T PRK05945        143 NNLRRYGVTIYDEWYVMRLILEDN------QAKGVVMYHIADGR---LEVVRA---------KAVMFATGGYGR  198 (575)
T ss_pred             HHHhhCCCEEEeCcEEEEEEEECC------EEEEEEEEEcCCCe---EEEEEC---------CEEEECCCCCcC
Confidence            355678999999999999998765      899998754 3455   556776         999999999864

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=99.40  E-value=3.1e-12  Score=137.17  Aligned_cols=52  Identities=13%  Similarity=0.302  Sum_probs=42.8

Q ss_pred             CCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEe-cCCCCCceeEEEecCCCCCCCCCcEEEecCCchh
Q 009873          230 NPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIK-SDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGS  299 (523)
Q Consensus       230 ~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~-~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~t  299 (523)
                      +..|+++++++.|++|+.+++      +|.||.+.+ .+|+   .+.+.+         +.||||+|+++.
T Consensus       145 ~~~~i~i~~~~~v~~Li~~~g------~v~Gv~~~~~~~g~---~~~i~A---------kaVIlATGG~~~  197 (582)
T PRK09231        145 KYPQIQRFDEHFVLDILVDDG------HVRGLVAMNMMEGT---LVQIRA---------NAVVMATGGAGR  197 (582)
T ss_pred             cCCCcEEEeCeEEEEEEEeCC------EEEEEEEEEcCCCc---EEEEEC---------CEEEECCCCCcC
Confidence            346899999999999998765      999998865 3465   567776         999999999864

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=99.39  E-value=3.3e-13  Score=137.23  Aligned_cols=191  Identities=21%  Similarity=0.249  Sum_probs=90.4

Q ss_pred             ccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCCCCCCccccchhccccCCCCCCccccccCcCCCceeecCceeccc
Q 009873           54 FDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEYTSVAQSFISTDGVQNHRGRVLGG  132 (523)
Q Consensus        54 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lGG  132 (523)
                      |||||||||++|++||+.|++ |++|+||||+.....        ++                             .+-|
T Consensus         1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gk--------Ki-----------------------------l~tG   43 (409)
T PF03486_consen    1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGK--------KI-----------------------------LITG   43 (409)
T ss_dssp             -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-H--------HH-----------------------------HHCG
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCccccc--------ce-----------------------------eecC
Confidence            899999999999999999999 999999999973311        00                             1112


Q ss_pred             ccccCCccccCCChhhHhhCCCCHHHHHHHhHhhhccccCCCCCChhHHHHHHHHHHcCCCCCCCCCcCCCCcceeeeeE
Q 009873          133 SSAINGGFYSRAREDFVKKAGWDEELVKKAYEWVESKVVFPPELTPWQSVVEFGLLEAGILPYNGYSLEHIEGTKIGGTA  212 (523)
Q Consensus       133 ~s~~~~~~~~r~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  212 (523)
                      .+.+|.........++....+-..+.+.+.++..            -..++.+.+.+.|++....     .     .+..
T Consensus        44 ~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f------------~~~d~~~ff~~~Gv~~~~~-----~-----~gr~  101 (409)
T PF03486_consen   44 NGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRF------------SPEDLIAFFEELGVPTKIE-----E-----DGRV  101 (409)
T ss_dssp             GGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-------------HHHHHHHHHHTT--EEE------S-----TTEE
T ss_pred             CCCccccccccchhhHhhhcccchHHHHHHHhcC------------CHHHHHHHHHhcCCeEEEc-----C-----CCEE
Confidence            2223322211111111111000111111112111            1245677888888742110     0     1122


Q ss_pred             EcCCCeeechHhhh-hhCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEE
Q 009873          213 FDQCGKRHTSADLL-EAGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVI  291 (523)
Q Consensus       213 ~~~~g~~~~~~~~l-~~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VI  291 (523)
                      ++......+..+.| ..+++.|++|+++++|++|..+++      .+..|++.  ++     ..+.+         +.||
T Consensus       102 fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~------~~f~v~~~--~~-----~~~~a---------~~vI  159 (409)
T PF03486_consen  102 FPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKED------GVFGVKTK--NG-----GEYEA---------DAVI  159 (409)
T ss_dssp             EETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETT------EEEEEEET--TT-----EEEEE---------SEEE
T ss_pred             CCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCC------ceeEeecc--Cc-----ccccC---------CEEE
Confidence            23332222233333 366788999999999999999887      77778762  22     35777         9999


Q ss_pred             EecCCchhHHHHHhhCCCChhhhhhCCCCceecCcc
Q 009873          292 LSAGALGSPQLLLLSGIGPHDHLKDLNIPTIVDLQE  327 (523)
Q Consensus       292 LaaGa~~tp~lLl~SGig~~~~l~~~gi~~~~~~p~  327 (523)
                      ||+|+...|++ =.+|.| -..++++|+.++...|.
T Consensus       160 LAtGG~S~p~~-GS~G~g-y~~a~~lGh~i~~~~Pa  193 (409)
T PF03486_consen  160 LATGGKSYPKT-GSDGSG-YRIAKKLGHTITPPYPA  193 (409)
T ss_dssp             E----SSSGGG-T-SSHH-HHHHHHTT--EEEEEEE
T ss_pred             EecCCCCcccc-CCCcHH-HHHHHHCCCcEecCCCc
Confidence            99999877763 111111 12455667666555554

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.39  E-value=2.6e-12  Score=138.75  Aligned_cols=35  Identities=26%  Similarity=0.424  Sum_probs=32.8

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      ..++||||||||++|++||++|++ |++|+||||+.
T Consensus         6 ~~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~   41 (626)
T PRK07803          6 RHSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSL   41 (626)
T ss_pred             ceeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccC
Confidence            457999999999999999999999 89999999986

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.38  E-value=2.9e-12  Score=137.57  Aligned_cols=55  Identities=15%  Similarity=0.230  Sum_probs=44.5

Q ss_pred             hCCCCCeEEEeccEEEEEEEcCC---CCCCCceeeEEEEEe-cCCCCCceeEEEecCCCCCCCCCcEEEecCCchh
Q 009873          228 AGNPKNLVVLLNATVNNIIFSNN---GKANESRAHGIRFIK-SDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGS  299 (523)
Q Consensus       228 ~~~~~g~~i~~~~~V~~l~~~~~---g~~~~~~v~GV~~~~-~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~t  299 (523)
                      .+++.|++|++++.|++|+.+++   +     +|+||.+.+ .+|+   .+.+.+         +.||||+|+++.
T Consensus       149 ~~~~~gv~i~~~~~v~~Li~~~~~~~g-----~v~Gv~~~~~~~g~---~~~i~A---------kaVVLATGG~~~  207 (583)
T PRK08205        149 NCVKHGVEFFNEFYVLDLLLTETPSGP-----VAAGVVAYELATGE---IHVFHA---------KAVVFATGGSGR  207 (583)
T ss_pred             HHHhcCCEEEeCCEEEEEEecCCccCC-----cEEEEEEEEcCCCe---EEEEEe---------CeEEECCCCCcc
Confidence            56678999999999999998762   3     899998864 3455   566776         999999999874

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.38  E-value=3.3e-12  Score=137.08  Aligned_cols=50  Identities=14%  Similarity=0.102  Sum_probs=41.0

Q ss_pred             CeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecC-CCCCceeEEEecCCCCCCCCCcEEEecCCchh
Q 009873          233 NLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSD-GSSNHMHEAYLNKPGNSSTWGDVILSAGALGS  299 (523)
Q Consensus       233 g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~-g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~t  299 (523)
                      ++++++++.+++|+.++++     +|+||.+.+.. ++   .+.+.+         +.||||||+++.
T Consensus       151 ~i~i~~~~~~~~Li~~~~g-----~v~Gv~~~~~~~g~---~~~i~A---------kaVILATGG~~~  201 (589)
T PRK08641        151 LVTKYEGWEFLGAVLDDEG-----VCRGIVAQDLFTME---IESFPA---------DAVIMATGGPGI  201 (589)
T ss_pred             CcEEEeeEEEEEEEECCCC-----EEEEEEEEECCCCc---EEEEEC---------CEEEECCCCCcC
Confidence            4899999999999986543     99999998753 44   456665         999999999975

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.38  E-value=3.7e-12  Score=136.82  Aligned_cols=56  Identities=11%  Similarity=0.205  Sum_probs=44.8

Q ss_pred             hhCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEec-CCCCCceeEEEecCCCCCCCCCcEEEecCCchh
Q 009873          227 EAGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKS-DGSSNHMHEAYLNKPGNSSTWGDVILSAGALGS  299 (523)
Q Consensus       227 ~~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~-~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~t  299 (523)
                      ..+.+.|+++++++.|++|+.++++     +|.||.+.+. +|+   .+.+.+         |.||||+|+++.
T Consensus       156 ~~~~~~gi~i~~~~~~~~Li~~~~g-----~v~Gv~~~~~~~g~---~~~i~A---------kaVILATGG~~~  212 (591)
T PRK07057        156 QQNVAAKTQFFVEWMALDLIRDADG-----DVLGVTALEMETGD---VYILEA---------KTTLFATGGAGR  212 (591)
T ss_pred             HHHHhcCCEEEeCcEEEEEEEcCCC-----eEEEEEEEEcCCCe---EEEEEC---------CeEEECCCCccc
Confidence            3456789999999999999987543     8999998653 455   566765         999999999875

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=99.37  E-value=5.5e-12  Score=134.91  Aligned_cols=52  Identities=17%  Similarity=0.340  Sum_probs=43.4

Q ss_pred             CCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEe-cCCCCCceeEEEecCCCCCCCCCcEEEecCCchh
Q 009873          230 NPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIK-SDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGS  299 (523)
Q Consensus       230 ~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~-~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~t  299 (523)
                      +.+|++++.++.|++|+.+++      +|.||.+.+ .+|+   .+.+.+         +.||||+|+++.
T Consensus       144 ~~~~i~i~~~~~v~~Li~~~g------~v~Gv~~~~~~~g~---~~~i~A---------kaVILATGG~~~  196 (580)
T TIGR01176       144 TYPQIMRYDEWFVTDLLVDDG------RVCGLVAIEMAEGR---LVTILA---------DAVVLATGGAGR  196 (580)
T ss_pred             hcCCCEEEeCeEEEEEEeeCC------EEEEEEEEEcCCCc---EEEEec---------CEEEEcCCCCcc
Confidence            446899999999999999765      999998865 3566   667776         999999999874

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.36  E-value=5.8e-12  Score=135.33  Aligned_cols=52  Identities=19%  Similarity=0.228  Sum_probs=42.5

Q ss_pred             CCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEec-CCCCCceeEEEecCCCCCCCCCcEEEecCCchh
Q 009873          230 NPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKS-DGSSNHMHEAYLNKPGNSSTWGDVILSAGALGS  299 (523)
Q Consensus       230 ~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~-~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~t  299 (523)
                      +..|+++++++.|++|+.+++      +++||.+.+. +|+   .+.+.+         +.||||+|+++.
T Consensus       149 ~~~gv~i~~~~~v~~Li~~~g------~v~Gv~~~~~~~g~---~~~i~A---------k~VIlATGG~~~  201 (577)
T PRK06069        149 RFDNIHFYDEHFVTSLIVENG------VFKGVTAIDLKRGE---FKVFQA---------KAGIIATGGAGR  201 (577)
T ss_pred             hcCCCEEEECCEEEEEEEECC------EEEEEEEEEcCCCe---EEEEEC---------CcEEEcCchhcc
Confidence            347999999999999998765      9999988663 455   556776         999999999863

>TIGR00551 nadB L-aspartate oxidase

Probab=99.35  E-value=6.8e-12  Score=132.24  Aligned_cols=53  Identities=13%  Similarity=0.287  Sum_probs=42.9

Q ss_pred             hCCC-CCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchh
Q 009873          228 AGNP-KNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGS  299 (523)
Q Consensus       228 ~~~~-~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~t  299 (523)
                      .+++ +|++|++++.|++|+.+++      ++.||.+.+. ++   ...+.+         +.||||+|++..
T Consensus       137 ~~~~~~gi~i~~~~~v~~l~~~~g------~v~Gv~~~~~-~~---~~~i~A---------~~VVlAtGG~~~  190 (488)
T TIGR00551       137 KALNHPNIRIIEGENALDLLIETG------RVVGVWVWNR-ET---VETCHA---------DAVVLATGGAGK  190 (488)
T ss_pred             HHHhcCCcEEEECeEeeeeeccCC------EEEEEEEEEC-Cc---EEEEEc---------CEEEECCCcccC
Confidence            4444 7999999999999998765      8999988764 44   456776         999999999864

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=99.35  E-value=7.4e-12  Score=134.59  Aligned_cols=55  Identities=16%  Similarity=0.199  Sum_probs=44.3

Q ss_pred             hhCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEec-CCCCCceeEEEecCCCCCCCCCcEEEecCCchh
Q 009873          227 EAGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKS-DGSSNHMHEAYLNKPGNSSTWGDVILSAGALGS  299 (523)
Q Consensus       227 ~~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~-~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~t  299 (523)
                      ..+.+.|+++++++.|++|+.+++      +|+||.+.+. +|+   ...+.+         +.||||+|++..
T Consensus       137 ~~~~~~gv~i~~~~~v~~L~~~~g------~v~Gv~~~~~~~g~---~~~i~A---------k~VVlAtGG~~~  192 (566)
T TIGR01812       137 EQCLKLGVSFFNEYFALDLIHDDG------RVRGVVAYDLKTGE---IVFFRA---------KAVVLATGGYGR  192 (566)
T ss_pred             HHHHHcCCEEEeccEEEEEEEeCC------EEEEEEEEECCCCc---EEEEEC---------CeEEECCCcccC
Confidence            344566999999999999998765      9999988753 465   566776         999999999864

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=99.34  E-value=1.4e-11  Score=131.36  Aligned_cols=62  Identities=16%  Similarity=0.231  Sum_probs=49.5

Q ss_pred             hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEec-CCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHhh
Q 009873          228 AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKS-DGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLS  306 (523)
Q Consensus       228 ~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~-~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~S  306 (523)
                      .+.+.|++++++++|++|..+++      +++||++.+. .++   ...+.+         +.||+|||++ +..|+...
T Consensus       158 ~A~~~Ga~i~~~t~V~~i~~~~~------~v~gv~v~d~~~g~---~~~i~A---------~~VVnAaG~w-a~~l~~~~  218 (546)
T PRK11101        158 DAKEHGAQILTYHEVTGLIREGD------TVCGVRVRDHLTGE---TQEIHA---------PVVVNAAGIW-GQHIAEYA  218 (546)
T ss_pred             HHHhCCCEEEeccEEEEEEEcCC------eEEEEEEEEcCCCc---EEEEEC---------CEEEECCChh-HHHHHHhc
Confidence            56778999999999999998776      8999998763 344   456886         9999999985 77777655


Q ss_pred             CC
Q 009873          307 GI  308 (523)
Q Consensus       307 Gi  308 (523)
                      |+
T Consensus       219 g~  220 (546)
T PRK11101        219 DL  220 (546)
T ss_pred             CC
Confidence            54

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=99.28  E-value=2.7e-11  Score=129.54  Aligned_cols=53  Identities=15%  Similarity=0.128  Sum_probs=41.7

Q ss_pred             CCCCeEEEeccEEEEEEEcCCC-CCCCceeeEEEEEec-CCCCCceeEEEecCCCCCCCCCcEEEecCCch
Q 009873          230 NPKNLVVLLNATVNNIIFSNNG-KANESRAHGIRFIKS-DGSSNHMHEAYLNKPGNSSTWGDVILSAGALG  298 (523)
Q Consensus       230 ~~~g~~i~~~~~V~~l~~~~~g-~~~~~~v~GV~~~~~-~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~  298 (523)
                      .+.+++|++++.|++|+.++++ +    +|.||.+.+. +|+   .+.+.+         |.||||+|+++
T Consensus       137 ~~~~~~i~~~~~v~~Ll~d~~~~G----rV~Gv~~~~~~~g~---~~~i~A---------kaVVLATGG~~  191 (614)
T TIGR02061       137 KNALGDIFERIFIVKLLLDKNTPN----RIAGAVGFNVRANE---VHVFKA---------KTVIVAAGGAV  191 (614)
T ss_pred             HhCCCeEEcccEEEEEEecCCCCC----eEEEEEEEEeCCCc---EEEEEC---------CEEEECCCccc
Confidence            3456799999999999997531 1    8999988653 465   667776         99999999986

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>PRK07512 L-aspartate oxidase; Provisional

Probab=99.28  E-value=1.9e-11  Score=129.33  Aligned_cols=50  Identities=18%  Similarity=0.307  Sum_probs=40.9

Q ss_pred             CCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchh
Q 009873          231 PKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGS  299 (523)
Q Consensus       231 ~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~t  299 (523)
                      +.|++++.++.|++|+.+++      +|+||.+.+ .+.   .+.+.+         +.||||+|+++.
T Consensus       149 ~~gV~i~~~~~v~~Li~~~g------~v~Gv~~~~-~~~---~~~i~A---------k~VVLATGG~~~  198 (513)
T PRK07512        149 TPSITVLEGAEARRLLVDDG------AVAGVLAAT-AGG---PVVLPA---------RAVVLATGGIGG  198 (513)
T ss_pred             CCCCEEEECcChhheeecCC------EEEEEEEEe-CCe---EEEEEC---------CEEEEcCCCCcC
Confidence            45999999999999988765      899999876 344   456776         999999999864

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=99.27  E-value=2.5e-11  Score=130.53  Aligned_cols=53  Identities=23%  Similarity=0.266  Sum_probs=43.5

Q ss_pred             CCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEec-CCCCCceeEEEecCCCCCCCCCcEEEecCCchh
Q 009873          230 NPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKS-DGSSNHMHEAYLNKPGNSSTWGDVILSAGALGS  299 (523)
Q Consensus       230 ~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~-~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~t  299 (523)
                      ++.|++|++++.|++|+.++++     +|+||.+.+. +|+   .+.+.+         |.||||+|+++.
T Consensus       144 ~~~gV~i~~~t~v~~Li~dd~g-----rV~GV~~~~~~~g~---~~~i~A---------kaVVLATGG~g~  197 (603)
T TIGR01811       144 AAGLVEKYEGWEMLDIIVVDGN-----RARGIIARNLVTGE---IETHSA---------DAVILATGGYGN  197 (603)
T ss_pred             ccCCcEEEeCcEEEEEEEcCCC-----EEEEEEEEECCCCc---EEEEEc---------CEEEECCCCCcC
Confidence            3468999999999999987544     8999998874 455   566776         999999999864

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>TIGR02734 crtI_fam phytoene desaturase

Probab=99.27  E-value=2.3e-10  Score=121.54  Aligned_cols=57  Identities=21%  Similarity=0.146  Sum_probs=44.5

Q ss_pred             hhCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHh
Q 009873          227 EAGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLL  305 (523)
Q Consensus       227 ~~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~  305 (523)
                      ..+++.|++|++++.|++|..+++      ++++|++.+  |+     ++.+         +.||+|++...+...|+.
T Consensus       227 ~~~~~~G~~i~~~~~V~~i~~~~~------~~~~V~~~~--g~-----~~~a---------d~VI~a~~~~~~~~~l~~  283 (502)
T TIGR02734       227 KLAEDLGGELRLNAEVIRIETEGG------RATAVHLAD--GE-----RLDA---------DAVVSNADLHHTYRRLLP  283 (502)
T ss_pred             HHHHHCCCEEEECCeEEEEEeeCC------EEEEEEECC--CC-----EEEC---------CEEEECCcHHHHHHHhcC
Confidence            356678999999999999998876      888887643  55     3565         999999998777766653

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>PRK08275 putative oxidoreductase; Provisional

Probab=99.25  E-value=3e-11  Score=129.22  Aligned_cols=55  Identities=18%  Similarity=0.239  Sum_probs=43.9

Q ss_pred             hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEe-cCCCCCceeEEEecCCCCCCCCCcEEEecCCchh
Q 009873          228 AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIK-SDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGS  299 (523)
Q Consensus       228 ~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~-~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~t  299 (523)
                      .+++.|++|++++.|++|+.++++     ++.||.+.+ .+|+   .+.+.+         |.||||+|+++.
T Consensus       146 ~~~~~gv~i~~~~~v~~Li~~~~g-----~v~Gv~~~~~~~g~---~~~i~A---------k~VIlATGG~~~  201 (554)
T PRK08275        146 QLKRARVLITNRIMATRLLTDADG-----RVAGALGFDCRTGE---FLVIRA---------KAVILCCGAAGR  201 (554)
T ss_pred             HHHHCCCEEEcceEEEEEEEcCCC-----eEEEEEEEecCCCc---EEEEEC---------CEEEECCCCccc
Confidence            456789999999999999997433     899998765 3465   566776         999999999853

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=99.25  E-value=6.6e-12  Score=127.07  Aligned_cols=57  Identities=32%  Similarity=0.433  Sum_probs=44.6

Q ss_pred             hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHhhC
Q 009873          228 AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSG  307 (523)
Q Consensus       228 ~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~SG  307 (523)
                      .+++.|++|+++++|++|..+++      +++||++.+  |+      +.+         +.||+|+|+ +++.|+..+|
T Consensus       156 ~~~~~Gv~i~~~~~V~~i~~~~~------~v~gv~~~~--g~------i~a---------d~vV~a~G~-~s~~l~~~~~  211 (358)
T PF01266_consen  156 EAQRAGVEIRTGTEVTSIDVDGG------RVTGVRTSD--GE------IRA---------DRVVLAAGA-WSPQLLPLLG  211 (358)
T ss_dssp             HHHHTT-EEEESEEEEEEEEETT------EEEEEEETT--EE------EEE---------CEEEE--GG-GHHHHHHTTT
T ss_pred             HHHHhhhhccccccccchhhccc------ccccccccc--cc------ccc---------ceeEecccc-cceeeeeccc
Confidence            55677999999999999999998      888888643  43      887         999999997 6888888776


Q ss_pred             C
Q 009873          308 I  308 (523)
Q Consensus       308 i  308 (523)
                      +
T Consensus       212 ~  212 (358)
T PF01266_consen  212 L  212 (358)
T ss_dssp             T
T ss_pred             c
Confidence            5

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=99.22  E-value=7e-11  Score=127.30  Aligned_cols=35  Identities=31%  Similarity=0.673  Sum_probs=32.5

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc---cCeeEEEecCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD---NFSVLLVERGG   85 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae---g~~VlvlE~G~   85 (523)
                      ..++||||||||++|++||+++++   |.+|+||||+.
T Consensus         9 ~~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~   46 (608)
T PRK06854          9 EVDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKAN   46 (608)
T ss_pred             eeEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCC
Confidence            457999999999999999999988   79999999996

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=99.20  E-value=9.8e-11  Score=126.37  Aligned_cols=63  Identities=22%  Similarity=0.286  Sum_probs=49.7

Q ss_pred             hhCCCCCeEEEeccEEEEEEEcC-CCCCCCceeeEEEEEec-CCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHH
Q 009873          227 EAGNPKNLVVLLNATVNNIIFSN-NGKANESRAHGIRFIKS-DGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLL  304 (523)
Q Consensus       227 ~~~~~~g~~i~~~~~V~~l~~~~-~g~~~~~~v~GV~~~~~-~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl  304 (523)
                      ..+++.|++++++++|++|..++ ++     ++++|++.+. +++   .+++.+         +.||+|||++ +..|+.
T Consensus       240 ~~A~~~Ga~i~~~~~V~~l~~~~~~g-----~v~gV~v~d~~tg~---~~~i~a---------~~VVnAaGaw-s~~l~~  301 (627)
T PLN02464        240 CTAALAGAAVLNYAEVVSLIKDESTG-----RIVGARVRDNLTGK---EFDVYA---------KVVVNAAGPF-CDEVRK  301 (627)
T ss_pred             HHHHhCCcEEEeccEEEEEEEecCCC-----cEEEEEEEECCCCc---EEEEEe---------CEEEECCCHh-HHHHHH
Confidence            36778899999999999999874 33     8999988763 344   556787         9999999985 777777


Q ss_pred             hhC
Q 009873          305 LSG  307 (523)
Q Consensus       305 ~SG  307 (523)
                      ..|
T Consensus       302 ~~g  304 (627)
T PLN02464        302 MAD  304 (627)
T ss_pred             hcc
Confidence            654

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=99.19  E-value=1.3e-10  Score=111.44  Aligned_cols=35  Identities=29%  Similarity=0.345  Sum_probs=32.6

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      ..+|||||||+|++|+++|++|++ |++|+||||..
T Consensus        23 ~~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~   58 (257)
T PRK04176         23 YLEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKL   58 (257)
T ss_pred             hccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Confidence            347999999999999999999999 99999999986

>TIGR02730 carot_isom carotene isomerase

Probab=99.18  E-value=4.9e-09  Score=110.98  Aligned_cols=56  Identities=21%  Similarity=0.314  Sum_probs=44.5

Q ss_pred             hhCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHH
Q 009873          227 EAGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLL  304 (523)
Q Consensus       227 ~~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl  304 (523)
                      ..+++.|++|++++.|++|..+++      ++.+|++.+  |+     ++.+         +.||+|+|...+-..|+
T Consensus       237 ~~~~~~G~~i~~~~~V~~I~~~~~------~~~gv~~~~--g~-----~~~a---------d~vV~a~~~~~~~~~Ll  292 (493)
T TIGR02730       237 KGLEKHGGQIRYRARVTKIILENG------KAVGVKLAD--GE-----KIYA---------KRIVSNATRWDTFGKLL  292 (493)
T ss_pred             HHHHHCCCEEEeCCeeeEEEecCC------cEEEEEeCC--CC-----EEEc---------CEEEECCChHHHHHHhC
Confidence            466788999999999999998876      899998653  54     3565         89999999877665554

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=99.17  E-value=8.2e-11  Score=124.06  Aligned_cols=52  Identities=17%  Similarity=0.244  Sum_probs=42.5

Q ss_pred             CCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecC-CCCCceeEEEecCCCCCCCCCcEEEecCCch
Q 009873          230 NPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSD-GSSNHMHEAYLNKPGNSSTWGDVILSAGALG  298 (523)
Q Consensus       230 ~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~-g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~  298 (523)
                      +..+++++.+..|++|+.++++     ++.||...+.+ |+   .+.+++         |.||+|+|+.+
T Consensus       150 ~~~~~~~~~~~~~~~l~~~~~~-----~v~Gvv~~~~~~g~---~~~~~a---------kavilaTGG~g  202 (562)
T COG1053         150 KFSGIEIFDEYFVLDLLVDDGG-----GVAGVVARDLRTGE---LYVFRA---------KAVILATGGAG  202 (562)
T ss_pred             HhhcchhhhhhhhhhheecCCC-----cEEEEEEEEecCCc---EEEEec---------CcEEEccCCce
Confidence            3367899999999999998773     59999887744 66   666665         99999999998

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.15  E-value=2.5e-10  Score=128.46  Aligned_cols=39  Identities=33%  Similarity=0.518  Sum_probs=35.2

Q ss_pred             ccccCCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           47 KEVAGKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        47 ~~~~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .+.+..++||||||||.+|+.+|+++++ |++|+||||+.
T Consensus         7 ~~~~~~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~   46 (897)
T PRK13800          7 TDALRLDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAH   46 (897)
T ss_pred             CCcceeecCEEEECcCHHHHHHHHHHHHCCCeEEEEeccc
Confidence            3445678999999999999999999999 89999999996

>TIGR00292 thiazole biosynthesis enzyme

Probab=99.14  E-value=2.4e-10  Score=109.22  Aligned_cols=34  Identities=32%  Similarity=0.458  Sum_probs=32.5

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .+|||||||+|++|+++|+.|++ |++|+||||+.
T Consensus        20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~   54 (254)
T TIGR00292        20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSL   54 (254)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            47999999999999999999999 89999999996

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=99.14  E-value=9.2e-10  Score=111.11  Aligned_cols=63  Identities=22%  Similarity=0.194  Sum_probs=48.2

Q ss_pred             hhhCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHh
Q 009873          226 LEAGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLL  305 (523)
Q Consensus       226 l~~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~  305 (523)
                      ...+.+.|+++..|++|++|..+++      .++-+..  .+|+   .. +.+         |.||.|||. .+-+|+.+
T Consensus       160 ~e~a~~~g~~i~ln~eV~~i~~~~d------g~~~~~~--~~g~---~~-~~a---------k~Vin~AGl-~Ad~la~~  217 (429)
T COG0579         160 AEEAQANGVELRLNTEVTGIEKQSD------GVFVLNT--SNGE---ET-LEA---------KFVINAAGL-YADPLAQM  217 (429)
T ss_pred             HHHHHHcCCEEEecCeeeEEEEeCC------ceEEEEe--cCCc---EE-EEe---------eEEEECCch-hHHHHHHH
Confidence            3356677999999999999999887      2222322  3466   44 777         999999997 69999999


Q ss_pred             hCCCC
Q 009873          306 SGIGP  310 (523)
Q Consensus       306 SGig~  310 (523)
                      +|+..
T Consensus       218 ~g~~~  222 (429)
T COG0579         218 AGIPE  222 (429)
T ss_pred             hCCCc
Confidence            99865

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=99.13  E-value=7.2e-10  Score=115.79  Aligned_cols=39  Identities=36%  Similarity=0.625  Sum_probs=34.3

Q ss_pred             ccccCCcccEEEECCCCchHHHHhhhhc-c--CeeEEEecCC
Q 009873           47 KEVAGKSFDYIVVGGGTTGCPLAATLSD-N--FSVLLVERGG   85 (523)
Q Consensus        47 ~~~~~~~~DvIIVGsG~aG~~~A~~Lae-g--~~VlvlE~G~   85 (523)
                      ....+.+|||||||||+.|+++|+.|++ +  .+|+||||..
T Consensus        39 ~~~~~~~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~   80 (497)
T PTZ00383         39 NRLGSDVYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRS   80 (497)
T ss_pred             ccccCCcccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCc
Confidence            3455678999999999999999999998 3  7999999985

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=99.13  E-value=8.8e-11  Score=105.71  Aligned_cols=35  Identities=29%  Similarity=0.413  Sum_probs=29.9

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      ..+|||+|||+|++|+++|+.|++ |+||+|+|+..
T Consensus        15 ~~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~   50 (230)
T PF01946_consen   15 YLEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKL   50 (230)
T ss_dssp             HTEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSS
T ss_pred             hccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCC
Confidence            457999999999999999999999 99999999986

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=99.11  E-value=1.8e-08  Score=106.83  Aligned_cols=36  Identities=33%  Similarity=0.558  Sum_probs=33.1

Q ss_pred             ccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCCC
Q 009873           54 FDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPFG   89 (523)
Q Consensus        54 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~~   89 (523)
                      -||||||||.+|+++|..|++ |++|+|+||....++
T Consensus         2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG   38 (492)
T TIGR02733         2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGG   38 (492)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCC
Confidence            489999999999999999999 999999999986654

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=99.11  E-value=6.5e-10  Score=114.92  Aligned_cols=37  Identities=32%  Similarity=0.520  Sum_probs=32.8

Q ss_pred             ccCCcccEEEECCCCchHHHHhhhhc--c-CeeEEEecCC
Q 009873           49 VAGKSFDYIVVGGGTTGCPLAATLSD--N-FSVLLVERGG   85 (523)
Q Consensus        49 ~~~~~~DvIIVGsG~aG~~~A~~Lae--g-~~VlvlE~G~   85 (523)
                      +...+|||||||||..|+++|++|++  | .+|+||||+.
T Consensus        26 ~~~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~   65 (407)
T TIGR01373        26 EPKPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGW   65 (407)
T ss_pred             CCCccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccc
Confidence            34568999999999999999999996  6 5999999985

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=99.11  E-value=2.8e-10  Score=118.45  Aligned_cols=59  Identities=20%  Similarity=0.259  Sum_probs=45.1

Q ss_pred             hhCCCCCeEEEeccEEEEEEEcC-CCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHh
Q 009873          227 EAGNPKNLVVLLNATVNNIIFSN-NGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLL  305 (523)
Q Consensus       227 ~~~~~~g~~i~~~~~V~~l~~~~-~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~  305 (523)
                      ..+++.|++|+++++|++|+.++ ++     +++||...+  +    ...+.+         |.||||+|+++..+-++.
T Consensus       131 ~~a~~~Gv~i~~~~~v~~l~~~~~~g-----~v~gv~~~~--~----~~~i~a---------k~VIlAtGG~~~n~~~~~  190 (432)
T TIGR02485       131 SSAERLGVEIRYGIAVDRIPPEAFDG-----AHDGPLTTV--G----THRITT---------QALVLAAGGLGANRDWLR  190 (432)
T ss_pred             HHHHHcCCEEEeCCEEEEEEecCCCC-----eEEEEEEcC--C----cEEEEc---------CEEEEcCCCcccCHHHHH
Confidence            35678899999999999999873 32     899987642  2    235666         999999999987665544

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.10  E-value=3e-09  Score=111.95  Aligned_cols=38  Identities=29%  Similarity=0.493  Sum_probs=34.8

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPFG   89 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~~   89 (523)
                      ..+||||||||.+|+++|..||+ |++|+||||....++
T Consensus         2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG   40 (487)
T COG1233           2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGG   40 (487)
T ss_pred             CCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCc
Confidence            36899999999999999999999 999999999886655

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.10  E-value=1.3e-09  Score=115.31  Aligned_cols=57  Identities=9%  Similarity=0.120  Sum_probs=44.7

Q ss_pred             hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHH
Q 009873          228 AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLL  304 (523)
Q Consensus       228 ~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl  304 (523)
                      .+.+.|++++.+++|++|..+++       ..+|.+.+..|+   ++++.+         +.||+|||++ +..++.
T Consensus       164 ~a~~~Ga~i~~~~~V~~i~~~~~-------~~~v~~~~~~g~---~~~i~a---------~~VVnAaG~w-a~~l~~  220 (502)
T PRK13369        164 DAAERGATILTRTRCVSARREGG-------LWRVETRDADGE---TRTVRA---------RALVNAAGPW-VTDVIH  220 (502)
T ss_pred             HHHHCCCEEecCcEEEEEEEcCC-------EEEEEEEeCCCC---EEEEEe---------cEEEECCCcc-HHHHHh
Confidence            56788999999999999987653       456777664466   677887         9999999985 666655

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=99.10  E-value=1.6e-09  Score=114.69  Aligned_cols=36  Identities=33%  Similarity=0.624  Sum_probs=33.4

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGS   86 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~   86 (523)
                      .++|||||||||+.|+.+|+.|+. |+||+||||++.
T Consensus         4 ~~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~   40 (508)
T PRK12266          4 METYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDL   40 (508)
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence            457999999999999999999999 999999999863

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=99.08  E-value=5.3e-10  Score=99.98  Aligned_cols=34  Identities=32%  Similarity=0.423  Sum_probs=31.7

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .+-||||||+|++|+++|++||+ |+||+|+||.-
T Consensus        29 ~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~l   63 (262)
T COG1635          29 LESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKL   63 (262)
T ss_pred             hhccEEEECcCcchHHHHHHHHhCCceEEEEEeec
Confidence            35799999999999999999999 89999999974

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=99.08  E-value=4.8e-09  Score=108.10  Aligned_cols=64  Identities=16%  Similarity=0.247  Sum_probs=53.9

Q ss_pred             hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecC-CCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHhh
Q 009873          228 AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSD-GSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLS  306 (523)
Q Consensus       228 ~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~-g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~S  306 (523)
                      .+...|.++++.++|++++.+++       +.||++.|.. |+   .+.+++         +.||.|||.+ +-.++...
T Consensus       173 ~A~~~Ga~il~~~~v~~~~re~~-------v~gV~~~D~~tg~---~~~ira---------~~VVNAaGpW-~d~i~~~~  232 (532)
T COG0578         173 DAAEHGAEILTYTRVESLRREGG-------VWGVEVEDRETGE---TYEIRA---------RAVVNAAGPW-VDEILEMA  232 (532)
T ss_pred             HHHhcccchhhcceeeeeeecCC-------EEEEEEEecCCCc---EEEEEc---------CEEEECCCcc-HHHHHHhh
Confidence            56789999999999999998875       8999999855 67   888997         9999999985 77888777


Q ss_pred             CCCCh
Q 009873          307 GIGPH  311 (523)
Q Consensus       307 Gig~~  311 (523)
                      +..+.
T Consensus       233 ~~~~~  237 (532)
T COG0578         233 GLEQS  237 (532)
T ss_pred             cccCC
Confidence            66543

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=99.07  E-value=3.2e-09  Score=100.43  Aligned_cols=35  Identities=43%  Similarity=0.635  Sum_probs=32.5

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      ..++||||||+|.+|+++|.+||+ |++|++||...
T Consensus         3 ~~~~dvivvgaglaglvaa~elA~aG~~V~ildQEg   38 (552)
T COG3573           3 GLTADVIVVGAGLAGLVAAAELADAGKRVLILDQEG   38 (552)
T ss_pred             cccccEEEECccHHHHHHHHHHHhcCceEEEEcccc
Confidence            357999999999999999999999 99999999875

>PRK08401 L-aspartate oxidase; Provisional

Probab=99.07  E-value=2.3e-09  Score=112.44  Aligned_cols=32  Identities=31%  Similarity=0.533  Sum_probs=30.6

Q ss_pred             ccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           54 FDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        54 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      +||||||||.+|+++|.+|++ |++|+||||+.
T Consensus         2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~   34 (466)
T PRK08401          2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGI   34 (466)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            699999999999999999999 89999999985

>PLN02661 Putative thiazole synthesis

Probab=99.06  E-value=1.2e-09  Score=107.45  Aligned_cols=36  Identities=31%  Similarity=0.451  Sum_probs=32.5

Q ss_pred             cCCcccEEEECCCCchHHHHhhhhc--cCeeEEEecCC
Q 009873           50 AGKSFDYIVVGGGTTGCPLAATLSD--NFSVLLVERGG   85 (523)
Q Consensus        50 ~~~~~DvIIVGsG~aG~~~A~~Lae--g~~VlvlE~G~   85 (523)
                      ...++||||||+|++|+++|+.|++  |++|+||||+.
T Consensus        89 ~~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~  126 (357)
T PLN02661         89 TYADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSV  126 (357)
T ss_pred             hcccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCc
Confidence            3567999999999999999999996  69999999975

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=99.06  E-value=6e-09  Score=109.22  Aligned_cols=64  Identities=19%  Similarity=0.140  Sum_probs=45.5

Q ss_pred             hhCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEe-cCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHh
Q 009873          227 EAGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIK-SDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLL  305 (523)
Q Consensus       227 ~~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~-~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~  305 (523)
                      ..+++.|++|+++++|++|..++++     .+ .|.+.+ ..|+   ..++.+         +.||+|||+. +.+|+..
T Consensus       186 ~~a~~~Gv~i~~~t~V~~i~~~~~~-----~v-~v~~~~~~~g~---~~~i~A---------~~VV~AAG~~-s~~La~~  246 (483)
T TIGR01320       186 GYLVQNGTTIRFGHEVRNLKRQSDG-----SW-TVTVKNTRTGG---KRTLNT---------RFVFVGAGGG-ALPLLQK  246 (483)
T ss_pred             HHHHhCCCEEEeCCEEEEEEEcCCC-----eE-EEEEeeccCCc---eEEEEC---------CEEEECCCcc-hHHHHHH
Confidence            3556679999999999999876542     22 233332 2243   345776         9999999984 7888888


Q ss_pred             hCCC
Q 009873          306 SGIG  309 (523)
Q Consensus       306 SGig  309 (523)
                      .|+.
T Consensus       247 ~Gi~  250 (483)
T TIGR01320       247 SGIP  250 (483)
T ss_pred             cCCC
Confidence            8875

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=99.03  E-value=1.4e-09  Score=102.38  Aligned_cols=56  Identities=25%  Similarity=0.478  Sum_probs=45.9

Q ss_pred             CCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhH-HHHHh
Q 009873          232 KNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSP-QLLLL  305 (523)
Q Consensus       232 ~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp-~lLl~  305 (523)
                      .-++|++|++|++|+.+++      +|.||++.+..|+   ...+..         ..||||+|+|+-. .-|++
T Consensus       158 e~~ki~~nskvv~il~n~g------kVsgVeymd~sge---k~~~~~---------~~VVlatGGf~ysd~~lLK  214 (477)
T KOG2404|consen  158 ELVKILLNSKVVDILRNNG------KVSGVEYMDASGE---KSKIIG---------DAVVLATGGFGYSDKELLK  214 (477)
T ss_pred             HHHhhhhcceeeeeecCCC------eEEEEEEEcCCCC---ccceec---------CceEEecCCcCcChHHHHH
Confidence            3599999999999996666      9999999998888   656665         9999999999853 44443

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=99.02  E-value=1.3e-09  Score=114.24  Aligned_cols=36  Identities=31%  Similarity=0.401  Sum_probs=32.7

Q ss_pred             cCCcccEEEECCCCchHHHHhhhhc---cCeeEEEecCC
Q 009873           50 AGKSFDYIVVGGGTTGCPLAATLSD---NFSVLLVERGG   85 (523)
Q Consensus        50 ~~~~~DvIIVGsG~aG~~~A~~Lae---g~~VlvlE~G~   85 (523)
                      .+.++||||||||++|+++|++|++   |.+|+|||++.
T Consensus        21 ~~~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~   59 (460)
T TIGR03329        21 GDTQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADL   59 (460)
T ss_pred             CCceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence            4567999999999999999999997   58999999985

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=99.01  E-value=4.9e-09  Score=109.96  Aligned_cols=35  Identities=26%  Similarity=0.519  Sum_probs=31.9

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc---cCeeEEEecCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD---NFSVLLVERGG   85 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae---g~~VlvlE~G~   85 (523)
                      ...|||||||||+.|+++|++|++   +.+|+||||..
T Consensus         3 ~~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~   40 (494)
T PRK05257          3 ESKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLD   40 (494)
T ss_pred             CccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCC
Confidence            456899999999999999999987   58999999986

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=98.99  E-value=5.8e-09  Score=106.79  Aligned_cols=32  Identities=44%  Similarity=0.620  Sum_probs=30.7

Q ss_pred             ccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           54 FDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        54 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      |||||||||++|+++|++|++ |++|+|||++.
T Consensus         1 ~dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~   33 (380)
T TIGR01377         1 FDVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFD   33 (380)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            799999999999999999999 89999999986

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=98.98  E-value=4.6e-09  Score=108.71  Aligned_cols=32  Identities=28%  Similarity=0.471  Sum_probs=30.8

Q ss_pred             ccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           54 FDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        54 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      +||||||||++|+++|++|++ |++|+||||+.
T Consensus         2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~   34 (410)
T PRK12409          2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR   34 (410)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            599999999999999999999 89999999996

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=98.98  E-value=2.8e-10  Score=117.96  Aligned_cols=60  Identities=23%  Similarity=0.247  Sum_probs=0.0

Q ss_pred             hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHhhC
Q 009873          228 AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSG  307 (523)
Q Consensus       228 ~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~SG  307 (523)
                      .+.+.|++|++++.|.+++.+++      ++.||++.++.|    ..++.+         +.||-|+|   ...|+.++|
T Consensus        99 ~l~e~gv~v~~~t~v~~v~~~~~------~i~~V~~~~~~g----~~~i~A---------~~~IDaTG---~g~l~~~aG  156 (428)
T PF12831_consen   99 MLAEAGVEVLLGTRVVDVIRDGG------RITGVIVETKSG----RKEIRA---------KVFIDATG---DGDLAALAG  156 (428)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccc------cccccccccccc----cccccc---------cccccccc---ccccccccc
Confidence            44678999999999999999877      999999987655    466876         99999999   457888887


Q ss_pred             CC
Q 009873          308 IG  309 (523)
Q Consensus       308 ig  309 (523)
                      +.
T Consensus       157 ~~  158 (428)
T PF12831_consen  157 AP  158 (428)
T ss_dssp             --
T ss_pred             cc
Confidence            63

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=98.96  E-value=6.5e-09  Score=106.28  Aligned_cols=34  Identities=29%  Similarity=0.393  Sum_probs=32.1

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .+|||||||||+.|+++|++|++ |++|+||||+.
T Consensus         2 ~~~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~   36 (376)
T PRK11259          2 MRYDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFM   36 (376)
T ss_pred             CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence            36899999999999999999999 99999999986

>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]

Probab=98.95  E-value=1.2e-08  Score=98.54  Aligned_cols=54  Identities=17%  Similarity=0.313  Sum_probs=44.9

Q ss_pred             hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhH
Q 009873          228 AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSP  300 (523)
Q Consensus       228 ~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp  300 (523)
                      ++..+|+++ ++..|..|+.+++      .|.||++.++.|+   +.+..|         ..-|+|-|-|..=
T Consensus       157 a~slpNV~~-eeGtV~sLlee~g------vvkGV~yk~k~ge---e~~~~A---------pLTvVCDGcfSnl  210 (509)
T KOG1298|consen  157 AASLPNVRL-EEGTVKSLLEEEG------VVKGVTYKNKEGE---EVEAFA---------PLTVVCDGCFSNL  210 (509)
T ss_pred             HhcCCCeEE-eeeeHHHHHhccC------eEEeEEEecCCCc---eEEEec---------ceEEEecchhHHH
Confidence            667899998 5567899998887      8999999998888   767776         9999999988553

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=98.93  E-value=1.1e-08  Score=106.25  Aligned_cols=31  Identities=26%  Similarity=0.428  Sum_probs=29.8

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      ||||||||.+|+++|++|++ |.+|+||||+.
T Consensus         2 ~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~   33 (416)
T PRK00711          2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQP   33 (416)
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            79999999999999999999 89999999985

>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=98.89  E-value=6.5e-09  Score=104.31  Aligned_cols=59  Identities=19%  Similarity=0.202  Sum_probs=49.6

Q ss_pred             hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecC-CCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHH
Q 009873          228 AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSD-GSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLL  304 (523)
Q Consensus       228 ~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~-g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl  304 (523)
                      .|.+.|+++....+|.+|+.++++     ++.|++++|.- |+   ++.|++         |.||-|||.| |-.|+.
T Consensus       233 TA~r~GA~v~Nh~ev~~Llkd~~~-----kv~Ga~~rD~iTG~---e~~I~A---------k~VVNATGpf-sDsIr~  292 (680)
T KOG0042|consen  233 TAARNGATVLNHVEVVSLLKDKDG-----KVIGARARDHITGK---EYEIRA---------KVVVNATGPF-SDSIRK  292 (680)
T ss_pred             HHHhcchhhhhHHHHHHHhhCCCC-----ceeeeEEEEeecCc---EEEEEE---------EEEEeCCCCc-cHHHHh
Confidence            456899999999999999999886     89999998843 77   899998         9999999998 444433

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=98.89  E-value=7.7e-09  Score=107.29  Aligned_cols=36  Identities=42%  Similarity=0.647  Sum_probs=33.3

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSP   87 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~   87 (523)
                      ++|||||||||++|+++|+.|++ |++|+||||+..+
T Consensus         4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~   40 (428)
T PRK10157          4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSA   40 (428)
T ss_pred             ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCC
Confidence            46999999999999999999999 9999999999743

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=98.88  E-value=1.2e-08  Score=104.89  Aligned_cols=33  Identities=24%  Similarity=0.648  Sum_probs=30.8

Q ss_pred             cccEEEECCCCchHHHHhhhhc---cCeeEEEecCC
Q 009873           53 SFDYIVVGGGTTGCPLAATLSD---NFSVLLVERGG   85 (523)
Q Consensus        53 ~~DvIIVGsG~aG~~~A~~Lae---g~~VlvlE~G~   85 (523)
                      .|||||||||++|+++|++|++   |++|+||||+.
T Consensus         2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~   37 (393)
T PRK11728          2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKES   37 (393)
T ss_pred             CccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence            4899999999999999999996   69999999985

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=98.86  E-value=6.1e-09  Score=106.06  Aligned_cols=32  Identities=34%  Similarity=0.591  Sum_probs=30.7

Q ss_pred             ccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           54 FDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        54 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      |||||||||++|+++|++|++ |++|+|||++.
T Consensus         1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~   33 (365)
T TIGR03364         1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSS   33 (365)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            699999999999999999999 99999999986

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=98.84  E-value=6.8e-09  Score=106.69  Aligned_cols=36  Identities=33%  Similarity=0.737  Sum_probs=33.6

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSP   87 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~   87 (523)
                      .+|||||||+|++|++||++|++ |++|+||||+..+
T Consensus         2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~   38 (396)
T COG0644           2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEP   38 (396)
T ss_pred             ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCC
Confidence            47999999999999999999999 8999999999754

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=98.83  E-value=4.8e-08  Score=100.72  Aligned_cols=42  Identities=31%  Similarity=0.418  Sum_probs=37.4

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCCCCCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPFGNPL   92 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~~~~~   92 (523)
                      +++|||||||+|.+||++|..|+. |+|||+||+.+..++...
T Consensus         2 ~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~a   44 (443)
T PTZ00363          2 DETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESA   44 (443)
T ss_pred             CCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccc
Confidence            568999999999999999999999 999999999987765433

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=98.83  E-value=1.3e-07  Score=98.64  Aligned_cols=35  Identities=26%  Similarity=0.463  Sum_probs=31.4

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc---cCeeEEEecCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD---NFSVLLVERGG   85 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae---g~~VlvlE~G~   85 (523)
                      ...+||||||||++|+++|+.|++   +.+|+||||-+
T Consensus         4 ~~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~   41 (497)
T PRK13339          4 SESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLD   41 (497)
T ss_pred             CccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCC
Confidence            356899999999999999999998   49999999943

>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]

Probab=98.81  E-value=1.1e-08  Score=99.62  Aligned_cols=75  Identities=16%  Similarity=0.243  Sum_probs=52.2

Q ss_pred             hhh-hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEe----cCCCCCceeEEEecCCCCCCCCCcEEEecCCch-
Q 009873          225 LLE-AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIK----SDGSSNHMHEAYLNKPGNSSTWGDVILSAGALG-  298 (523)
Q Consensus       225 ~l~-~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~----~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~-  298 (523)
                      +|. .|+..|++|..+..+..+++++++     .|.||-+.|    ++|...     ..++.|....++.-|+|-|.-+ 
T Consensus       188 wLg~kAEe~GvEiyPg~aaSevly~edg-----sVkGiaT~D~GI~k~G~pK-----d~FerGme~hak~TifAEGc~G~  257 (621)
T KOG2415|consen  188 WLGEKAEELGVEIYPGFAASEVLYDEDG-----SVKGIATNDVGISKDGAPK-----DTFERGMEFHAKVTIFAEGCHGS  257 (621)
T ss_pred             HHHHHHHhhCceeccccchhheeEcCCC-----cEeeEeeccccccCCCCcc-----ccccccceecceeEEEeccccch
Confidence            454 678899999999999999999887     899998766    233310     0111222223499999988766 


Q ss_pred             -hHHHHHhhCCC
Q 009873          299 -SPQLLLLSGIG  309 (523)
Q Consensus       299 -tp~lLl~SGig  309 (523)
                       |-+++.+-++.
T Consensus       258 Lskqi~kkf~Lr  269 (621)
T KOG2415|consen  258 LSKQIIKKFDLR  269 (621)
T ss_pred             hHHHHHHHhCcc
Confidence             56777776554

>PRK10015 oxidoreductase; Provisional

Probab=98.81  E-value=7.9e-09  Score=107.12  Aligned_cols=37  Identities=41%  Similarity=0.689  Sum_probs=33.8

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSP   87 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~   87 (523)
                      +++|||||||||++|+++|+.|++ |++|+||||+..+
T Consensus         3 ~~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~   40 (429)
T PRK10015          3 DDKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSA   40 (429)
T ss_pred             ccccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence            357999999999999999999999 9999999999743

>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]

Probab=98.80  E-value=2.3e-08  Score=95.11  Aligned_cols=39  Identities=36%  Similarity=0.397  Sum_probs=35.0

Q ss_pred             cCCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCC
Q 009873           50 AGKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPF   88 (523)
Q Consensus        50 ~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~   88 (523)
                      +.+..|+||||+|.-|+++|++|++ |.++|+||+-+.+.
T Consensus         4 ~~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph   43 (399)
T KOG2820|consen    4 MVKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPH   43 (399)
T ss_pred             cccceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCc
Confidence            4567899999999999999999999 89999999987553

>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]

Probab=98.79  E-value=2.5e-07  Score=91.36  Aligned_cols=60  Identities=23%  Similarity=0.315  Sum_probs=49.5

Q ss_pred             hhhCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHh
Q 009873          226 LEAGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLL  305 (523)
Q Consensus       226 l~~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~  305 (523)
                      ...+++.|.+|.|++.|..|+.|++      ++.||...+  |+     ++++         |.||-.|+-+.|=.-|+.
T Consensus       271 a~~~~~~GaeI~tka~Vq~Illd~g------ka~GV~L~d--G~-----ev~s---------k~VvSNAt~~~Tf~kLlp  328 (561)
T KOG4254|consen  271 AEGAKRAGAEIFTKATVQSILLDSG------KAVGVRLAD--GT-----EVRS---------KIVVSNATPWDTFEKLLP  328 (561)
T ss_pred             HHHHHhccceeeehhhhhheeccCC------eEEEEEecC--Cc-----EEEe---------eeeecCCchHHHHHHhCC
Confidence            3477899999999999999999996      999999876  76     4665         899999999888855554


Q ss_pred             hC
Q 009873          306 SG  307 (523)
Q Consensus       306 SG  307 (523)
                      -+
T Consensus       329 ~e  330 (561)
T KOG4254|consen  329 GE  330 (561)
T ss_pred             Cc
Confidence            43

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=98.76  E-value=4.9e-08  Score=102.87  Aligned_cols=34  Identities=35%  Similarity=0.621  Sum_probs=31.9

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .+|||||||||.||+.||..||+ |.+|+|||+..
T Consensus         3 ~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~   37 (618)
T PRK05192          3 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNL   37 (618)
T ss_pred             ccceEEEECchHHHHHHHHHHHHcCCcEEEEeccc
Confidence            46999999999999999999999 99999999874

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=98.76  E-value=1.6e-07  Score=96.28  Aligned_cols=35  Identities=29%  Similarity=0.537  Sum_probs=32.8

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      ..++||||||+|++|+++|+.|++ |.+|+|+|++.
T Consensus         2 ~~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~   37 (387)
T COG0665           2 SMKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGE   37 (387)
T ss_pred             CCcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCc
Confidence            357899999999999999999999 89999999987

>TIGR00275 flavoprotein, HI0933 family

Probab=98.74  E-value=6.9e-08  Score=99.22  Aligned_cols=29  Identities=41%  Similarity=0.688  Sum_probs=27.8

Q ss_pred             EEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           57 IVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        57 IIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      ||||||++|+++|++|++ |++|+||||++
T Consensus         1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~   30 (400)
T TIGR00275         1 IIIGGGAAGLMAAITAAREGLSVLLLEKNK   30 (400)
T ss_pred             CEEEEeHHHHHHHHHHHhcCCcEEEEecCc
Confidence            699999999999999999 89999999987

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>PLN02985 squalene monooxygenase

Probab=98.74  E-value=1.6e-07  Score=99.39  Aligned_cols=39  Identities=33%  Similarity=0.444  Sum_probs=34.8

Q ss_pred             ccccCCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           47 KEVAGKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        47 ~~~~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      +...+..+||||||||++|+++|..|++ |.+|+||||..
T Consensus        37 ~~~~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~   76 (514)
T PLN02985         37 EERKDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDL   76 (514)
T ss_pred             ccCcCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcC
Confidence            3445678999999999999999999999 99999999974

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=98.72  E-value=1.1e-07  Score=88.03  Aligned_cols=31  Identities=29%  Similarity=0.474  Sum_probs=29.9

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      +++|||+|++|+++|+.|++ |++|+|+|||.
T Consensus         3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~   34 (331)
T COG3380           3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGR   34 (331)
T ss_pred             cEEEEccchHHHHHHHHHHhcCcEEEEEEcCC
Confidence            69999999999999999999 99999999996

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=98.72  E-value=1.1e-07  Score=99.44  Aligned_cols=60  Identities=18%  Similarity=0.262  Sum_probs=44.6

Q ss_pred             hhCCCCCeEEEeccEEEEEEEc-CCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchh
Q 009873          227 EAGNPKNLVVLLNATVNNIIFS-NNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGS  299 (523)
Q Consensus       227 ~~~~~~g~~i~~~~~V~~l~~~-~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~t  299 (523)
                      ..+++.|++|+++++|++|+++ ++++   .+|+||++.. +|+   ...+..      .+++.||+++|++..
T Consensus       234 ~~Le~~GV~f~~~t~VtdL~~~~d~~~---~~VtgI~~~~-~~~---~~~I~l------~~~DlVivTnGs~t~  294 (576)
T PRK13977        234 KYLEDHGVDFQYGTKVTDIDFDITGGK---KTATAIHLTR-NGK---EETIDL------TEDDLVFVTNGSITE  294 (576)
T ss_pred             HHHHhCCCEEEeCCEEEEEEEcCCCCc---eEEEEEEEEe-CCc---eeEEEe------cCCCEEEEeCCcCcc
Confidence            3678899999999999999996 3221   2899999976 344   333332      358999999999853

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=98.68  E-value=5.9e-08  Score=97.04  Aligned_cols=48  Identities=25%  Similarity=0.441  Sum_probs=37.2

Q ss_pred             hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCch
Q 009873          228 AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALG  298 (523)
Q Consensus       228 ~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~  298 (523)
                      ....+|++|+ +.+|++|+.+++      +|.||...  +|+     .+.+         +.||+|+|.|.
T Consensus       105 l~~~~nl~i~-~~~V~~l~~e~~------~v~GV~~~--~g~-----~~~a---------~~vVlaTGtfl  152 (392)
T PF01134_consen  105 LESHPNLTII-QGEVTDLIVENG------KVKGVVTK--DGE-----EIEA---------DAVVLATGTFL  152 (392)
T ss_dssp             HHTSTTEEEE-ES-EEEEEECTT------EEEEEEET--TSE-----EEEE---------CEEEE-TTTGB
T ss_pred             HhcCCCeEEE-EcccceEEecCC------eEEEEEeC--CCC-----EEec---------CEEEEeccccc
Confidence            3457999996 689999999987      99999875  355     4776         99999999953

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=98.65  E-value=1.6e-07  Score=102.99  Aligned_cols=33  Identities=33%  Similarity=0.557  Sum_probs=31.4

Q ss_pred             cccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           53 SFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        53 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      ++||||||||++|+++|++|++ |++|+||||+.
T Consensus       260 ~~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~  293 (662)
T PRK01747        260 ARDAAIIGGGIAGAALALALARRGWQVTLYEADE  293 (662)
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCeEEEEecCC
Confidence            5899999999999999999999 99999999985

>PLN02697 lycopene epsilon cyclase

Probab=98.64  E-value=1.3e-06  Score=91.97  Aligned_cols=35  Identities=29%  Similarity=0.436  Sum_probs=32.0

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      +..|||||||+|++|+++|..|++ |++|+|||++.
T Consensus       106 ~~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~  141 (529)
T PLN02697        106 DGTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL  141 (529)
T ss_pred             cCcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcc
Confidence            456999999999999999999999 99999999863

>PRK06185 hypothetical protein; Provisional

Probab=98.63  E-value=2.6e-07  Score=95.57  Aligned_cols=36  Identities=28%  Similarity=0.459  Sum_probs=33.1

Q ss_pred             cCCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           50 AGKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        50 ~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      +..+|||+|||||++|+++|+.|++ |++|+|||+.+
T Consensus         3 ~~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~   39 (407)
T PRK06185          3 EVETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHA   39 (407)
T ss_pred             ccccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence            3467999999999999999999999 99999999985

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=98.61  E-value=3e-06  Score=85.14  Aligned_cols=66  Identities=29%  Similarity=0.360  Sum_probs=50.8

Q ss_pred             hhh-hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEec-CCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHH
Q 009873          225 LLE-AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKS-DGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQL  302 (523)
Q Consensus       225 ~l~-~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~-~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~l  302 (523)
                      ++. ..+++|+++.++++|++|...+++      -.-|.+.+. .|+   ...+++         +-|++.||| ++=.|
T Consensus       187 l~~~l~~~~~~~~~~~~eV~~i~r~~dg------~W~v~~~~~~~~~---~~~v~a---------~FVfvGAGG-~aL~L  247 (488)
T PF06039_consen  187 LVEYLQKQKGFELHLNHEVTDIKRNGDG------RWEVKVKDLKTGE---KREVRA---------KFVFVGAGG-GALPL  247 (488)
T ss_pred             HHHHHHhCCCcEEEecCEeCeeEECCCC------CEEEEEEecCCCC---eEEEEC---------CEEEECCch-HhHHH
Confidence            344 445569999999999999998874      234444442 355   677887         999999999 69999


Q ss_pred             HHhhCCC
Q 009873          303 LLLSGIG  309 (523)
Q Consensus       303 Ll~SGig  309 (523)
                      |++|||.
T Consensus       248 Lqksgi~  254 (488)
T PF06039_consen  248 LQKSGIP  254 (488)
T ss_pred             HHHcCCh
Confidence            9999984

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.61  E-value=2.9e-07  Score=98.74  Aligned_cols=56  Identities=14%  Similarity=0.172  Sum_probs=46.3

Q ss_pred             hhCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEe-cCCCCCceeEEEecCCCCCCCCCcEEEecCCchh
Q 009873          227 EAGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIK-SDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGS  299 (523)
Q Consensus       227 ~~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~-~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~t  299 (523)
                      ..+.+.|++|++++.+++|+.++++     +|+||.+.+ .+|+   .+.+.+         |.||||||+++.
T Consensus       134 ~~~~~~gi~i~~~~~~~~Li~~~~g-----~v~Gv~~~~~~~g~---~~~i~A---------kaVVLATGG~~~  190 (570)
T PRK05675        134 QGNLKNGTTFLNEWYAVDLVKNQDG-----AVVGVIAICIETGE---TVYIKS---------KATVLATGGAGR  190 (570)
T ss_pred             HHHhccCCEEEECcEEEEEEEcCCC-----eEEEEEEEEcCCCc---EEEEec---------CeEEECCCCccc
Confidence            3556789999999999999987544     999999865 4576   677776         999999999985

>KOG2853 consensus Possible oxidoreductase [General function prediction only]

Probab=98.56  E-value=1.2e-06  Score=83.45  Aligned_cols=37  Identities=32%  Similarity=0.549  Sum_probs=32.4

Q ss_pred             ccCCcccEEEECCCCchHHHHhhhhc-----cCeeEEEecCC
Q 009873           49 VAGKSFDYIVVGGGTTGCPLAATLSD-----NFSVLLVERGG   85 (523)
Q Consensus        49 ~~~~~~DvIIVGsG~aG~~~A~~Lae-----g~~VlvlE~G~   85 (523)
                      .-..++||+|||+|..|+++|+-|.|     |++|+|+||.+
T Consensus        82 ~f~~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErdd  123 (509)
T KOG2853|consen   82 VFPYHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDD  123 (509)
T ss_pred             ccccccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccC
Confidence            34568999999999999999999865     59999999986

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.54  E-value=9.4e-07  Score=91.62  Aligned_cols=37  Identities=35%  Similarity=0.621  Sum_probs=33.7

Q ss_pred             cCCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCC
Q 009873           50 AGKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGS   86 (523)
Q Consensus        50 ~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~   86 (523)
                      ...+|||+|||||++|+++|..|++ |++|+|+||.+.
T Consensus        15 ~~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   52 (415)
T PRK07364         15 RSLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPA   52 (415)
T ss_pred             CccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCc
Confidence            3457999999999999999999999 999999999873

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=98.52  E-value=6.3e-07  Score=93.44  Aligned_cols=36  Identities=28%  Similarity=0.384  Sum_probs=32.5

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSP   87 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~   87 (523)
                      ...+|+|||||++|+++|.+|.+ |++|+|+||++..
T Consensus         9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~v   45 (461)
T PLN02172          9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQV   45 (461)
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence            35789999999999999999998 9999999998733

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=98.49  E-value=1.2e-07  Score=87.86  Aligned_cols=57  Identities=18%  Similarity=0.273  Sum_probs=33.8

Q ss_pred             hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHhhC
Q 009873          228 AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSG  307 (523)
Q Consensus       228 ~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~SG  307 (523)
                      .+++.+++++++++|+++..+++      + .-|++.  +++     ++.+         +.||+|+|.+..|+.+..-|
T Consensus        91 ~~~~~~l~i~~~~~V~~v~~~~~------~-w~v~~~--~~~-----~~~a---------~~VVlAtG~~~~p~~p~~~g  147 (203)
T PF13738_consen   91 YAERFGLEIRFNTRVESVRRDGD------G-WTVTTR--DGR-----TIRA---------DRVVLATGHYSHPRIPDIPG  147 (203)
T ss_dssp             HHHHTTGGEETS--EEEEEEETT------T-EEEEET--TS------EEEE---------EEEEE---SSCSB---S-TT
T ss_pred             HHhhcCcccccCCEEEEEEEecc------E-EEEEEE--ecc-----eeee---------eeEEEeeeccCCCCcccccc
Confidence            45566777999999999999976      4 234432  343     4667         99999999998998765443

...

>PRK06126 hypothetical protein; Provisional

Probab=98.48  E-value=2.6e-06  Score=91.61  Aligned_cols=35  Identities=34%  Similarity=0.540  Sum_probs=32.7

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      ..++||+|||||++|+++|+.|++ |.+|+|+||.+
T Consensus         5 ~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~   40 (545)
T PRK06126          5 TSETPVLIVGGGPVGLALALDLGRRGVDSILVERKD   40 (545)
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            457999999999999999999999 99999999875

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=98.48  E-value=1e-06  Score=90.70  Aligned_cols=35  Identities=40%  Similarity=0.573  Sum_probs=32.9

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      ...+||+|||||++|+++|+.|++ |.+|+||||.+
T Consensus         4 ~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~   39 (392)
T PRK08773          4 RSRRDAVIVGGGVVGAACALALADAGLSVALVEGRE   39 (392)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCC
Confidence            467999999999999999999999 99999999986

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=98.46  E-value=8.5e-07  Score=87.20  Aligned_cols=32  Identities=41%  Similarity=0.730  Sum_probs=30.9

Q ss_pred             ccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           54 FDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        54 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      |||+|||||++|+++|+.|++ |.+|+||||..
T Consensus         1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~   33 (295)
T TIGR02032         1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKS   33 (295)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            799999999999999999999 89999999986

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=98.41  E-value=2.6e-06  Score=89.63  Aligned_cols=35  Identities=26%  Similarity=0.371  Sum_probs=32.5

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      ..+|||||||||++|+.+|++|++ |++|+|+|++.
T Consensus         3 ~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~   38 (461)
T PRK05249          3 MYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYR   38 (461)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccc
Confidence            356999999999999999999999 99999999975

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=98.41  E-value=3.6e-06  Score=90.18  Aligned_cols=35  Identities=34%  Similarity=0.531  Sum_probs=32.9

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      ..++||+|||+|++|+++|..|++ |.+|+||||..
T Consensus         8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~   43 (538)
T PRK06183          8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWP   43 (538)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            467999999999999999999999 99999999986

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=98.41  E-value=1.6e-06  Score=89.00  Aligned_cols=31  Identities=39%  Similarity=0.758  Sum_probs=30.2

Q ss_pred             ccEEEECCCCchHHHHhhhhc-cCeeEEEecC
Q 009873           54 FDYIVVGGGTTGCPLAATLSD-NFSVLLVERG   84 (523)
Q Consensus        54 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G   84 (523)
                      |||||||||++|+++|+.|++ |++|+|||+.
T Consensus         1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~   32 (388)
T TIGR02023         1 YDVAVIGGGPSGATAAETLARAGIETILLERA   32 (388)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence            799999999999999999999 9999999997

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>PRK07208 hypothetical protein; Provisional

Probab=98.40  E-value=2e-06  Score=90.92  Aligned_cols=39  Identities=21%  Similarity=0.325  Sum_probs=34.3

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPFG   89 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~~   89 (523)
                      .+..||||||||++|+++|++|++ |++|+|+|+.+..++
T Consensus         2 ~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG   41 (479)
T PRK07208          2 TNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGG   41 (479)
T ss_pred             CCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence            356799999999999999999999 999999999875544

>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E

Probab=98.39  E-value=1.7e-06  Score=92.92  Aligned_cols=55  Identities=13%  Similarity=0.248  Sum_probs=45.9

Q ss_pred             hhCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEe-cCCCCCceeEEEecCCCCCCCCCcEEEecCCchh
Q 009873          227 EAGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIK-SDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGS  299 (523)
Q Consensus       227 ~~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~-~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~t  299 (523)
                      ..+.+.|++|++++.|++|+.+++      +|+||...+ .+|+   .+.+.+         |.||||||+++.
T Consensus       127 ~~~~~~gi~i~~~~~~~~Li~~~g------~v~Ga~~~~~~~g~---~~~i~A---------kaVILATGG~~~  182 (565)
T TIGR01816       127 QQNLKADTSFFNEYFALDLLMEDG------ECRGVIAYCLETGE---IHRFRA---------KAVVLATGGYGR  182 (565)
T ss_pred             HHHHhCCCEEEeccEEEEEEeeCC------EEEEEEEEEcCCCc---EEEEEe---------CeEEECCCCccc
Confidence            356678999999999999998755      999999865 3466   677876         999999999975

coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=98.39  E-value=1.9e-06  Score=89.65  Aligned_cols=38  Identities=32%  Similarity=0.589  Sum_probs=35.0

Q ss_pred             cccCCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           48 EVAGKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        48 ~~~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .+...+|||||||||++|+++|+.|++ |++|+||||..
T Consensus        34 ~~~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~   72 (450)
T PLN00093         34 KLSGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL   72 (450)
T ss_pred             CcCCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence            466778999999999999999999999 99999999974

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=98.39  E-value=2.9e-06  Score=87.12  Aligned_cols=35  Identities=37%  Similarity=0.631  Sum_probs=32.5

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGS   86 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~   86 (523)
                      .++||||||||++|+++|+.|++ |.+|+|+||+..
T Consensus         4 ~~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~   39 (388)
T PRK07608          4 MKFDVVVVGGGLVGASLALALAQSGLRVALLAPRAP   39 (388)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCC
Confidence            46899999999999999999999 999999999873

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=98.38  E-value=5.9e-07  Score=90.68  Aligned_cols=34  Identities=29%  Similarity=0.549  Sum_probs=30.0

Q ss_pred             cccEEEECCCCchHHHHhhhhc-cCeeEEEecCCC
Q 009873           53 SFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGS   86 (523)
Q Consensus        53 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~   86 (523)
                      +|||||||||++|+++|..|++ |++|+|+||.+.
T Consensus         1 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~   35 (356)
T PF01494_consen    1 EYDVAIVGAGPAGLAAALALARAGIDVTIIERRPD   35 (356)
T ss_dssp             EEEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CceEEEECCCHHHHHHHHHHHhcccccccchhccc
Confidence            5899999999999999999999 899999999863

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=98.37  E-value=3.1e-06  Score=89.19  Aligned_cols=34  Identities=32%  Similarity=0.667  Sum_probs=32.1

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERG   84 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G   84 (523)
                      ..+||+||||||++|+.+|.+|++ |++|+|+|++
T Consensus         2 ~~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~   36 (472)
T PRK05976          2 AKEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG   36 (472)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc
Confidence            457999999999999999999999 9999999986

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=98.36  E-value=4.4e-06  Score=85.64  Aligned_cols=33  Identities=36%  Similarity=0.630  Sum_probs=31.4

Q ss_pred             cccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           53 SFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        53 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      +|||||||+|.+|+++|+.|++ |++|+|||++.
T Consensus         2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~   35 (422)
T PRK05329          2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ   35 (422)
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence            5899999999999999999999 99999999985

>PRK08244 hypothetical protein; Provisional

Probab=98.36  E-value=3.4e-06  Score=89.45  Aligned_cols=33  Identities=30%  Similarity=0.555  Sum_probs=31.5

Q ss_pred             cccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           53 SFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        53 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      +|||+|||||++|+++|..|++ |.+|+||||.+
T Consensus         2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~   35 (493)
T PRK08244          2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLK   35 (493)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            4899999999999999999999 99999999986

>PRK06847 hypothetical protein; Provisional

Probab=98.35  E-value=4.3e-06  Score=85.47  Aligned_cols=34  Identities=32%  Similarity=0.404  Sum_probs=31.7

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      +..||+|||||++|+++|..|++ |.+|+|+|+.+
T Consensus         3 ~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~   37 (375)
T PRK06847          3 AVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDP   37 (375)
T ss_pred             CcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            45799999999999999999999 99999999976

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=98.35  E-value=3.6e-06  Score=86.56  Aligned_cols=33  Identities=21%  Similarity=0.373  Sum_probs=31.5

Q ss_pred             cccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           53 SFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        53 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      ++||+|||+|++|+++|+.|++ |.+|+|+||.+
T Consensus         2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~   35 (392)
T PRK08243          2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRS   35 (392)
T ss_pred             cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCC
Confidence            5799999999999999999999 99999999986

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.35  E-value=4e-06  Score=88.21  Aligned_cols=35  Identities=26%  Similarity=0.366  Sum_probs=32.4

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      ..+||+||||+|++|..+|.+|++ |++|+|+|+.+
T Consensus         2 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~   37 (471)
T PRK06467          2 EIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYS   37 (471)
T ss_pred             CccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            356999999999999999999999 99999999874

>PRK07045 putative monooxygenase; Reviewed

Probab=98.35  E-value=4.4e-06  Score=85.77  Aligned_cols=35  Identities=34%  Similarity=0.544  Sum_probs=32.9

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      ..++||+|||||++|+++|..|++ |++|+|+||.+
T Consensus         3 ~~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~   38 (388)
T PRK07045          3 NNPVDVLINGSGIAGVALAHLLGARGHSVTVVERAA   38 (388)
T ss_pred             CceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCC
Confidence            457899999999999999999999 99999999997

>PRK08013 oxidoreductase; Provisional

Probab=98.33  E-value=4.5e-06  Score=86.08  Aligned_cols=34  Identities=29%  Similarity=0.529  Sum_probs=32.0

Q ss_pred             cccEEEECCCCchHHHHhhhhc-cCeeEEEecCCC
Q 009873           53 SFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGS   86 (523)
Q Consensus        53 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~   86 (523)
                      +|||||||+|++|+++|+.|++ |++|+||||.+.
T Consensus         3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~   37 (400)
T PRK08013          3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVP   37 (400)
T ss_pred             cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCC
Confidence            5899999999999999999999 999999999873

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.33  E-value=5.6e-06  Score=85.57  Aligned_cols=33  Identities=36%  Similarity=0.649  Sum_probs=31.4

Q ss_pred             cccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           53 SFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        53 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      +|||+|||||++|+++|+.|++ |.+|+|+|+.+
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~   35 (405)
T PRK05714          2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGP   35 (405)
T ss_pred             CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCC
Confidence            5899999999999999999999 99999999985

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=98.32  E-value=4.6e-06  Score=86.60  Aligned_cols=37  Identities=19%  Similarity=0.399  Sum_probs=33.1

Q ss_pred             cCCcccEEEECCCCchHHHHhhhhc-cCe-eEEEecCCC
Q 009873           50 AGKSFDYIVVGGGTTGCPLAATLSD-NFS-VLLVERGGS   86 (523)
Q Consensus        50 ~~~~~DvIIVGsG~aG~~~A~~Lae-g~~-VlvlE~G~~   86 (523)
                      ....+||+|||||.+|+++|++|.+ |.. ++++||.+.
T Consensus         5 ~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~   43 (443)
T COG2072           5 VATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDD   43 (443)
T ss_pred             cCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCC
Confidence            3467899999999999999999998 866 999999973

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=98.32  E-value=4.5e-06  Score=85.86  Aligned_cols=35  Identities=37%  Similarity=0.639  Sum_probs=32.7

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .++|||||||+|++|+++|..|++ |++|+|||+.+
T Consensus         3 ~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~   38 (391)
T PRK08020          3 NQPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAA   38 (391)
T ss_pred             cccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCC
Confidence            467999999999999999999999 99999999975

>TIGR00136 gidA glucose-inhibited division protein A

Probab=98.32  E-value=2.9e-06  Score=89.58  Aligned_cols=32  Identities=38%  Similarity=0.633  Sum_probs=30.5

Q ss_pred             ccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           54 FDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        54 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      |||||||+|.+|+.+|..+++ |.+|+|||+..
T Consensus         1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~   33 (617)
T TIGR00136         1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNL   33 (617)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCCEEEEeccc
Confidence            799999999999999999999 99999999974

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=98.31  E-value=5.4e-06  Score=84.10  Aligned_cols=58  Identities=19%  Similarity=0.079  Sum_probs=45.8

Q ss_pred             hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHh
Q 009873          228 AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLL  305 (523)
Q Consensus       228 ~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~  305 (523)
                      .+++.|++++.+++|+++..+++      ++++|.+.+  ++   ...+.+         +.||||+|++-|..|+..
T Consensus       272 ~~~~~Gg~il~g~~V~~i~~~~~------~v~~V~t~~--g~---~~~l~A---------D~vVLAaGaw~S~gL~a~  329 (419)
T TIGR03378       272 RFEQLGGVMLPGDRVLRAEFEGN------RVTRIHTRN--HR---DIPLRA---------DHFVLASGSFFSNGLVAE  329 (419)
T ss_pred             HHHHCCCEEEECcEEEEEEeeCC------eEEEEEecC--Cc---cceEEC---------CEEEEccCCCcCHHHHhh
Confidence            55678999999999999998887      888877643  32   234776         999999999877777554

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PRK07190 hypothetical protein; Provisional

Probab=98.30  E-value=3.8e-06  Score=88.50  Aligned_cols=35  Identities=17%  Similarity=0.316  Sum_probs=32.5

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      ...+||||||||++|+++|+.|++ |.+|+||||.+
T Consensus         3 ~~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~   38 (487)
T PRK07190          3 TQVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSD   38 (487)
T ss_pred             CccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCC
Confidence            456899999999999999999998 99999999986

>TIGR02028 ChlP geranylgeranyl reductase

Probab=98.30  E-value=2.9e-06  Score=87.24  Aligned_cols=32  Identities=38%  Similarity=0.614  Sum_probs=30.4

Q ss_pred             ccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           54 FDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        54 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      +||||||||++|+++|+.|++ |++|+||||..
T Consensus         1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~   33 (398)
T TIGR02028         1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKP   33 (398)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCC
Confidence            699999999999999999999 99999999964

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=98.30  E-value=1.2e-05  Score=80.07  Aligned_cols=39  Identities=26%  Similarity=0.428  Sum_probs=34.5

Q ss_pred             ccccCCcccEEEECCCCchHHHHhhhhc------cCeeEEEecCC
Q 009873           47 KEVAGKSFDYIVVGGGTTGCPLAATLSD------NFSVLLVERGG   85 (523)
Q Consensus        47 ~~~~~~~~DvIIVGsG~aG~~~A~~Lae------g~~VlvlE~G~   85 (523)
                      ...+...||+||||+|++|+.+|++++.      .++|++||+|.
T Consensus        12 ~~~~~~~~~vvivgag~~g~f~a~~~s~~ar~~~~~~i~~vd~g~   56 (486)
T COG2509          12 EALMNAALDVVIVGAGPAGLFAAYELSGDARKVPILKIYVVDVGL   56 (486)
T ss_pred             HHHhhhccceEEECCCchHHHHHHHHhhhcccCCceEEEEEEecc
Confidence            4556788999999999999999999984      37899999997

>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]

Probab=98.29  E-value=3e-06  Score=87.57  Aligned_cols=73  Identities=18%  Similarity=0.216  Sum_probs=51.8

Q ss_pred             EEcCCCeeechH--hhhh-hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCC
Q 009873          212 AFDQCGKRHTSA--DLLE-AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWG  288 (523)
Q Consensus       212 ~~~~~g~~~~~~--~~l~-~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~  288 (523)
                      +.+.+|..-++.  ..|. +|++.|+.|+.+|.|++|....+      +..||++..  |.      |.+         .
T Consensus       177 y~P~DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~------~~~gVeT~~--G~------iet---------~  233 (856)
T KOG2844|consen  177 YSPGDGVMDPAGLCQALARAASALGALVIENCPVTGLHVETD------KFGGVETPH--GS------IET---------E  233 (856)
T ss_pred             ecCCCcccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecC------CccceeccC--cc------eec---------c
Confidence            334455444332  2354 78899999999999999999888      566998754  76      776         8


Q ss_pred             cEEEecCCchhHHHHHhhCC
Q 009873          289 DVILSAGALGSPQLLLLSGI  308 (523)
Q Consensus       289 ~VILaaGa~~tp~lLl~SGi  308 (523)
                      .||-|||-+. -..-.++|+
T Consensus       234 ~~VNaaGvWA-r~Vg~m~gv  252 (856)
T KOG2844|consen  234 CVVNAAGVWA-REVGAMAGV  252 (856)
T ss_pred             eEEechhHHH-HHhhhhcCC
Confidence            9999999765 333445554

>PRK06184 hypothetical protein; Provisional

Probab=98.28  E-value=9.4e-06  Score=86.32  Aligned_cols=33  Identities=36%  Similarity=0.575  Sum_probs=31.6

Q ss_pred             cccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           53 SFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        53 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      ++||+|||||++|+++|+.|++ |.+|+||||.+
T Consensus         3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~   36 (502)
T PRK06184          3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAP   36 (502)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            5899999999999999999999 99999999986

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.27  E-value=4.4e-06  Score=86.25  Aligned_cols=33  Identities=30%  Similarity=0.557  Sum_probs=30.9

Q ss_pred             cccEEEECCCCchHHHHhhhhc-c--CeeEEEecCC
Q 009873           53 SFDYIVVGGGTTGCPLAATLSD-N--FSVLLVERGG   85 (523)
Q Consensus        53 ~~DvIIVGsG~aG~~~A~~Lae-g--~~VlvlE~G~   85 (523)
                      .|||||||||++|+++|+.|++ |  .+|+||||.+
T Consensus         1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~   36 (403)
T PRK07333          1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAP   36 (403)
T ss_pred             CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCC
Confidence            3899999999999999999998 6  9999999986

>PRK06834 hypothetical protein; Provisional

Probab=98.27  E-value=6.4e-06  Score=86.88  Aligned_cols=33  Identities=36%  Similarity=0.537  Sum_probs=31.5

Q ss_pred             cccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           53 SFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        53 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      ++||||||+|++|+++|+.|++ |.+|+||||.+
T Consensus         3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~   36 (488)
T PRK06834          3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRP   36 (488)
T ss_pred             cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            5899999999999999999999 99999999986

>PRK11445 putative oxidoreductase; Provisional

Probab=98.26  E-value=1e-05  Score=81.81  Aligned_cols=32  Identities=25%  Similarity=0.561  Sum_probs=30.4

Q ss_pred             ccEEEECCCCchHHHHhhhhccCeeEEEecCC
Q 009873           54 FDYIVVGGGTTGCPLAATLSDNFSVLLVERGG   85 (523)
Q Consensus        54 ~DvIIVGsG~aG~~~A~~Laeg~~VlvlE~G~   85 (523)
                      |||+|||+|++|+++|+.|++..+|+||||.+
T Consensus         2 ~dV~IvGaGpaGl~~A~~La~~~~V~liE~~~   33 (351)
T PRK11445          2 YDVAIIGLGPAGSALARLLAGKMKVIAIDKKH   33 (351)
T ss_pred             ceEEEECCCHHHHHHHHHHhccCCEEEEECCC
Confidence            89999999999999999998879999999986

>PRK09126 hypothetical protein; Provisional

Probab=98.24  E-value=6.2e-06  Score=84.80  Aligned_cols=34  Identities=35%  Similarity=0.556  Sum_probs=32.2

Q ss_pred             cccEEEECCCCchHHHHhhhhc-cCeeEEEecCCC
Q 009873           53 SFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGS   86 (523)
Q Consensus        53 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~   86 (523)
                      +|||||||||++|+++|+.|++ |++|+|+||...
T Consensus         3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~   37 (392)
T PRK09126          3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPL   37 (392)
T ss_pred             cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence            5899999999999999999999 999999999973

>PTZ00367 squalene epoxidase; Provisional

Probab=98.24  E-value=1.7e-05  Score=84.53  Aligned_cols=34  Identities=41%  Similarity=0.584  Sum_probs=32.0

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .+|||||||||++|+++|..|++ |.+|+|+||..
T Consensus        32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~   66 (567)
T PTZ00367         32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL   66 (567)
T ss_pred             cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence            57999999999999999999999 99999999974

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=98.24  E-value=1.1e-05  Score=82.76  Aligned_cols=32  Identities=41%  Similarity=0.672  Sum_probs=30.5

Q ss_pred             cEEEECCCCchHHHHhhhhc-c-CeeEEEecCCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-N-FSVLLVERGGS   86 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g-~~VlvlE~G~~   86 (523)
                      ||||||||++|+++|+.|++ | ++|+|+||.+.
T Consensus         1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~   34 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSP   34 (382)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCc
Confidence            89999999999999999999 9 99999999863

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=98.23  E-value=8.5e-06  Score=83.49  Aligned_cols=33  Identities=33%  Similarity=0.619  Sum_probs=31.0

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCCCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSP   87 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~   87 (523)
                      ||||||||++|+++|+.|++ |.+|+|+||.+.+
T Consensus         1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~   34 (385)
T TIGR01988         1 DIVIVGGGMVGLALALALARSGLKIALIEATPAE   34 (385)
T ss_pred             CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCcc
Confidence            89999999999999999999 9999999999743

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PLN02507 glutathione reductase

Probab=98.23  E-value=8.8e-06  Score=86.09  Aligned_cols=33  Identities=27%  Similarity=0.375  Sum_probs=31.4

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-cCeeEEEec
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVER   83 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~   83 (523)
                      ..+||+||||||++|..+|.+|++ |+||+|+|+
T Consensus        23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~   56 (499)
T PLN02507         23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICEL   56 (499)
T ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence            557999999999999999999999 999999997

>PTZ00058 glutathione reductase; Provisional

Probab=98.21  E-value=1.8e-06  Score=91.90  Aligned_cols=36  Identities=33%  Similarity=0.501  Sum_probs=33.1

Q ss_pred             cCCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           50 AGKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        50 ~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      ...+||+||||+|++|..+|.+|++ |++|+||||+.
T Consensus        45 ~~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~~   81 (561)
T PTZ00058         45 PRMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKDY   81 (561)
T ss_pred             CCccccEEEECcCHHHHHHHHHHHHcCCeEEEEeccc
Confidence            3468999999999999999999999 99999999974

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=98.19  E-value=2.1e-05  Score=84.52  Aligned_cols=35  Identities=29%  Similarity=0.488  Sum_probs=33.0

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      ..++||+|||||++|+++|+.|++ |.+|+||||.+
T Consensus        21 ~~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~   56 (547)
T PRK08132         21 PARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDD   56 (547)
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence            467999999999999999999999 99999999986

>PRK07588 hypothetical protein; Provisional

Probab=98.17  E-value=1.8e-05  Score=81.30  Aligned_cols=31  Identities=29%  Similarity=0.366  Sum_probs=29.8

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      ||+|||||++|+++|+.|++ |.+|+|+||.+
T Consensus         2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~   33 (391)
T PRK07588          2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAP   33 (391)
T ss_pred             eEEEECccHHHHHHHHHHHHCCCceEEEeCCC
Confidence            89999999999999999999 99999999985

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=98.15  E-value=1.5e-06  Score=64.91  Aligned_cols=30  Identities=23%  Similarity=0.473  Sum_probs=27.0

Q ss_pred             EECCCCchHHHHhhhhc-cCeeEEEecCCCC
Q 009873           58 VVGGGTTGCPLAATLSD-NFSVLLVERGGSP   87 (523)
Q Consensus        58 IVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~   87 (523)
                      |||||++|+++|++|++ |.+|+|+||.+..
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~   31 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRL   31 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCccc
Confidence            89999999999999999 8999999999743

...

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=98.14  E-value=7.7e-06  Score=84.01  Aligned_cols=31  Identities=35%  Similarity=0.600  Sum_probs=29.8

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      ||||||||++|+++|+.|++ |++|+|||+.+
T Consensus         1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~   32 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHP   32 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEccCC
Confidence            89999999999999999999 99999999986

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=98.12  E-value=1.2e-05  Score=82.43  Aligned_cols=32  Identities=38%  Similarity=0.624  Sum_probs=30.9

Q ss_pred             cccEEEECCCCchHHHHhhhhc-cCeeEEEecC
Q 009873           53 SFDYIVVGGGTTGCPLAATLSD-NFSVLLVERG   84 (523)
Q Consensus        53 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G   84 (523)
                      .+||+|||||++|+++|..|++ |++|+||||.
T Consensus         2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~   34 (387)
T COG0654           2 MLDVAIVGAGPAGLALALALARAGLDVTLLERA   34 (387)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Confidence            5899999999999999999999 9999999997

>PRK07236 hypothetical protein; Provisional

Probab=98.11  E-value=3.3e-05  Score=79.28  Aligned_cols=33  Identities=27%  Similarity=0.318  Sum_probs=31.2

Q ss_pred             cccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           53 SFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        53 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      ..||||||||++|+++|+.|++ |++|+|+||.+
T Consensus         6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~   39 (386)
T PRK07236          6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSP   39 (386)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            4799999999999999999999 99999999985

>PRK08163 salicylate hydroxylase; Provisional

Probab=98.11  E-value=2.1e-05  Score=81.07  Aligned_cols=34  Identities=32%  Similarity=0.502  Sum_probs=31.7

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      ...||+|||||++|+++|..|++ |.+|+|+||.+
T Consensus         3 ~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~   37 (396)
T PRK08163          3 KVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAA   37 (396)
T ss_pred             CCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCc
Confidence            35799999999999999999999 99999999986

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=98.09  E-value=2e-05  Score=80.95  Aligned_cols=33  Identities=21%  Similarity=0.428  Sum_probs=31.4

Q ss_pred             cccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           53 SFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        53 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .+||+|||||++|+++|..|++ |++|+|+||.+
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~   35 (390)
T TIGR02360         2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQS   35 (390)
T ss_pred             CceEEEECccHHHHHHHHHHHHCCCCEEEEECCC
Confidence            4799999999999999999999 99999999986

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=98.05  E-value=3.3e-05  Score=79.82  Aligned_cols=32  Identities=34%  Similarity=0.672  Sum_probs=30.6

Q ss_pred             cccEEEECCCCchHHHHhhhhc-cCeeEEEecC
Q 009873           53 SFDYIVVGGGTTGCPLAATLSD-NFSVLLVERG   84 (523)
Q Consensus        53 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G   84 (523)
                      .|||+|||+|++|+++|..|++ |++|+|||+.
T Consensus         4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~   36 (405)
T PRK08850          4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQ   36 (405)
T ss_pred             cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence            5899999999999999999999 9999999996

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=98.05  E-value=8.2e-06  Score=83.08  Aligned_cols=34  Identities=32%  Similarity=0.498  Sum_probs=31.1

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .+|||||||+|-||+-||..+|+ |.+++||--..
T Consensus         3 ~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~   37 (621)
T COG0445           3 KEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNL   37 (621)
T ss_pred             CCCceEEECCCccchHHHHhhhccCCeEEEEEcCC
Confidence            45999999999999999999999 99999997664

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=98.04  E-value=4.4e-05  Score=79.64  Aligned_cols=32  Identities=44%  Similarity=0.811  Sum_probs=29.9

Q ss_pred             ccEEEECCCCchHHHHhhhhc-----cCeeEEEecCC
Q 009873           54 FDYIVVGGGTTGCPLAATLSD-----NFSVLLVERGG   85 (523)
Q Consensus        54 ~DvIIVGsG~aG~~~A~~Lae-----g~~VlvlE~G~   85 (523)
                      |||||||||++|+++|+.|++     |.+|+|||+.+
T Consensus         1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~   37 (437)
T TIGR01989         1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVD   37 (437)
T ss_pred             CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCC
Confidence            799999999999999999986     79999999964

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=98.03  E-value=3.3e-06  Score=88.31  Aligned_cols=34  Identities=38%  Similarity=0.672  Sum_probs=31.9

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      ++|||||||||++|..+|.+|++ |++|+|+||+.
T Consensus         1 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~   35 (450)
T TIGR01421         1 KHYDYLVIGGGSGGIASARRAAEHGAKALLVEAKK   35 (450)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEecccc
Confidence            47999999999999999999999 99999999964

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=98.03  E-value=1.8e-05  Score=83.76  Aligned_cols=33  Identities=24%  Similarity=0.394  Sum_probs=27.2

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCCCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSP   87 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~   87 (523)
                      -|+|||||++|+++|..|.| |++|+++||.+..
T Consensus         3 rVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~i   36 (531)
T PF00743_consen    3 RVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDI   36 (531)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSS
T ss_pred             EEEEECccHHHHHHHHHHHHCCCCCeEEecCCCC
Confidence            38999999999999999998 9999999998744

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PRK06996 hypothetical protein; Provisional

Probab=97.99  E-value=8.9e-05  Score=76.41  Aligned_cols=37  Identities=32%  Similarity=0.567  Sum_probs=32.8

Q ss_pred             ccCCcccEEEECCCCchHHHHhhhhc-c----CeeEEEecCC
Q 009873           49 VAGKSFDYIVVGGGTTGCPLAATLSD-N----FSVLLVERGG   85 (523)
Q Consensus        49 ~~~~~~DvIIVGsG~aG~~~A~~Lae-g----~~VlvlE~G~   85 (523)
                      +...+|||+|||+|++|+++|+.|++ |    ++|+|+|+.+
T Consensus         7 ~~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~   48 (398)
T PRK06996          7 MAAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDARE   48 (398)
T ss_pred             ccCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCC
Confidence            45667999999999999999999998 6    4799999975

>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit

Probab=97.98  E-value=8.3e-05  Score=79.30  Aligned_cols=62  Identities=16%  Similarity=0.244  Sum_probs=50.6

Q ss_pred             hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEec-CCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHhh
Q 009873          228 AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKS-DGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLS  306 (523)
Q Consensus       228 ~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~-~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~S  306 (523)
                      .+.+.|++|+++++|++|..+++      ++.||++.+. .|+   ...+.+         +.||+|||++ +..|+...
T Consensus       137 ~A~~~Ga~i~~~t~V~~i~~~~~------~v~gv~v~~~~~g~---~~~i~a---------~~VVnAaG~w-a~~l~~~~  197 (516)
T TIGR03377       137 DAQEHGARIFTYTKVTGLIREGG------RVTGVKVEDHKTGE---EERIEA---------QVVINAAGIW-AGRIAEYA  197 (516)
T ss_pred             HHHHcCCEEEcCcEEEEEEEECC------EEEEEEEEEcCCCc---EEEEEc---------CEEEECCCcc-hHHHHHhc
Confidence            67788999999999999998776      8999998753 355   566887         9999999985 77887766


Q ss_pred             CC
Q 009873          307 GI  308 (523)
Q Consensus       307 Gi  308 (523)
                      |+
T Consensus       198 g~  199 (516)
T TIGR03377       198 GL  199 (516)
T ss_pred             CC
Confidence            65

Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=97.98  E-value=9.6e-06  Score=84.68  Aligned_cols=33  Identities=42%  Similarity=0.596  Sum_probs=31.7

Q ss_pred             cccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           53 SFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        53 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      +|||||||||++|+.+|.+|++ |++|+|+||++
T Consensus         3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~   36 (438)
T PRK07251          3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESK   36 (438)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCC
Confidence            6999999999999999999999 99999999985

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=97.97  E-value=6.5e-05  Score=85.95  Aligned_cols=35  Identities=29%  Similarity=0.422  Sum_probs=32.7

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      ...+||+|||||++|++||..|++ |++|+|+|+++
T Consensus       161 ~~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~  196 (985)
T TIGR01372       161 NAHCDVLVVGAGPAGLAAALAAARAGARVILVDEQP  196 (985)
T ss_pred             cccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence            356899999999999999999999 99999999986

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=97.97  E-value=5.2e-06  Score=86.84  Aligned_cols=33  Identities=24%  Similarity=0.442  Sum_probs=31.2

Q ss_pred             cccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           53 SFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        53 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      +||+||||+|++|..+|++|++ |++|+|+|++.
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~   35 (446)
T TIGR01424         2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEPR   35 (446)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCc
Confidence            6999999999999999999999 99999999963

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=97.97  E-value=6.9e-06  Score=78.13  Aligned_cols=39  Identities=36%  Similarity=0.612  Sum_probs=34.8

Q ss_pred             cccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCCCCC
Q 009873           53 SFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPFGNP   91 (523)
Q Consensus        53 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~~~~   91 (523)
                      .||+||||||.+|+++|..|++ |++||||||.+..+++.
T Consensus         1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNa   40 (374)
T COG0562           1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNA   40 (374)
T ss_pred             CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCcc
Confidence            3899999999999999999999 99999999998666543

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=97.97  E-value=2.2e-05  Score=80.05  Aligned_cols=31  Identities=42%  Similarity=0.673  Sum_probs=29.2

Q ss_pred             cEEEECCCCchHHHHhhh--hc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATL--SD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~L--ae-g~~VlvlE~G~   85 (523)
                      ||||||+|++|+++|++|  ++ |++|+|||+..
T Consensus         1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~   34 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKP   34 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence            899999999999999999  66 89999999986

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>PRK06370 mercuric reductase; Validated

Probab=97.95  E-value=6.5e-06  Score=86.58  Aligned_cols=35  Identities=43%  Similarity=0.722  Sum_probs=32.5

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      ..+|||||||||++|..+|.+|++ |++|+|+|++.
T Consensus         3 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~   38 (463)
T PRK06370          3 AQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGL   38 (463)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCc
Confidence            457999999999999999999999 99999999974

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=97.95  E-value=6.1e-05  Score=80.26  Aligned_cols=35  Identities=29%  Similarity=0.467  Sum_probs=31.6

Q ss_pred             cCCcccEEEECCCCchHHHHhhhhc-cCeeEEEecC
Q 009873           50 AGKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERG   84 (523)
Q Consensus        50 ~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G   84 (523)
                      ....|||+|||||++|+++|.+|++ |++|+|+|+.
T Consensus       208 ~~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~  243 (517)
T PRK15317        208 AKDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER  243 (517)
T ss_pred             cCCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Confidence            3557999999999999999999999 9999999763

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.93  E-value=6.9e-06  Score=86.32  Aligned_cols=32  Identities=31%  Similarity=0.550  Sum_probs=30.4

Q ss_pred             cccEEEECCCCchHHHHhhhhc-cCeeEEEecC
Q 009873           53 SFDYIVVGGGTTGCPLAATLSD-NFSVLLVERG   84 (523)
Q Consensus        53 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G   84 (523)
                      +||+||||+|++|+.+|.+|++ |++|+|+|+.
T Consensus         3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~   35 (466)
T PRK06115          3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGR   35 (466)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence            5999999999999999999999 9999999974

>PRK06116 glutathione reductase; Validated

Probab=97.91  E-value=7.8e-06  Score=85.67  Aligned_cols=34  Identities=35%  Similarity=0.541  Sum_probs=31.9

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .+|||||||||++|+.+|.+|++ |++|+|+|++.
T Consensus         3 ~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~~   37 (450)
T PRK06116          3 KDYDLIVIGGGSGGIASANRAAMYGAKVALIEAKR   37 (450)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence            57999999999999999999999 99999999973

>PRK06753 hypothetical protein; Provisional

Probab=97.90  E-value=0.00018  Score=73.51  Aligned_cols=31  Identities=26%  Similarity=0.444  Sum_probs=30.0

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      ||||||||++|+++|+.|++ |++|+|+||.+
T Consensus         2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~   33 (373)
T PRK06753          2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNE   33 (373)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence            79999999999999999999 99999999987

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=97.87  E-value=9.8e-05  Score=78.64  Aligned_cols=33  Identities=27%  Similarity=0.490  Sum_probs=30.5

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-cCeeEEEec
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVER   83 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~   83 (523)
                      ...|||+|||||++|+++|.+|++ |++|+|+|.
T Consensus       210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~  243 (515)
T TIGR03140       210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE  243 (515)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec
Confidence            457999999999999999999999 999999974

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=97.86  E-value=1.8e-05  Score=82.50  Aligned_cols=33  Identities=45%  Similarity=0.705  Sum_probs=26.8

Q ss_pred             cEEEECCCCchHHHHhhhhc-c---CeeEEEecCCCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-N---FSVLLVERGGSP   87 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g---~~VlvlE~G~~~   87 (523)
                      ||||||+|++|..+|..|++ +   .+|+|||+...+
T Consensus         1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~~   37 (454)
T PF04820_consen    1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDIP   37 (454)
T ss_dssp             EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS-
T ss_pred             CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCCC
Confidence            79999999999999999998 5   899999998744

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=97.85  E-value=0.00017  Score=70.33  Aligned_cols=34  Identities=29%  Similarity=0.580  Sum_probs=32.4

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .+||+||||+|++|-+||.++++ |++...+|+..
T Consensus        38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~   72 (506)
T KOG1335|consen   38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRG   72 (506)
T ss_pred             ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccC
Confidence            68999999999999999999999 99999999965

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.85  E-value=1.1e-05  Score=84.99  Aligned_cols=34  Identities=29%  Similarity=0.485  Sum_probs=32.2

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .+||+||||||++|+.+|.+|++ |++|+|+||+.
T Consensus         3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~   37 (462)
T PRK06416          3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK   37 (462)
T ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc
Confidence            57999999999999999999999 99999999975

>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]

Probab=97.84  E-value=0.00014  Score=69.05  Aligned_cols=39  Identities=31%  Similarity=0.555  Sum_probs=34.6

Q ss_pred             ccccCCcccEEEECCCCchHHHHhhhhc---cCeeEEEecCC
Q 009873           47 KEVAGKSFDYIVVGGGTTGCPLAATLSD---NFSVLLVERGG   85 (523)
Q Consensus        47 ~~~~~~~~DvIIVGsG~aG~~~A~~Lae---g~~VlvlE~G~   85 (523)
                      +......||.||||+|+.|++.|++|.-   +++|+||||..
T Consensus        42 ~s~s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~   83 (453)
T KOG2665|consen   42 ESISKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEK   83 (453)
T ss_pred             cccccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhh
Confidence            4566788999999999999999999874   69999999986

>PRK05868 hypothetical protein; Validated

Probab=97.83  E-value=0.00024  Score=72.50  Aligned_cols=31  Identities=32%  Similarity=0.429  Sum_probs=29.8

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      ||+|||+|++|+++|+.|++ |++|+|+||.+
T Consensus         3 ~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~   34 (372)
T PRK05868          3 TVVVSGASVAGTAAAYWLGRHGYSVTMVERHP   34 (372)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Confidence            89999999999999999999 99999999986

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.82  E-value=7.6e-05  Score=76.77  Aligned_cols=33  Identities=30%  Similarity=0.438  Sum_probs=30.8

Q ss_pred             ccEEEECCCCchHHHHhhhhc-cCeeEEEecCCC
Q 009873           54 FDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGS   86 (523)
Q Consensus        54 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~   86 (523)
                      -+|+|||||++||++|+.|.+ |+.|.++||.+.
T Consensus         7 ~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~   40 (448)
T KOG1399|consen    7 KDVAVIGAGPAGLAAARELLREGHEVVVFERTDD   40 (448)
T ss_pred             CceEEECcchHHHHHHHHHHHCCCCceEEEecCC
Confidence            479999999999999999988 999999999973

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=97.82  E-value=1.4e-05  Score=82.50  Aligned_cols=35  Identities=34%  Similarity=0.592  Sum_probs=32.6

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      ..+||+||||+|++|-++|.+|++ |+||+++|++.
T Consensus         2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~   37 (454)
T COG1249           2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGE   37 (454)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecC
Confidence            458999999999999999999999 88899999995

>PLN02546 glutathione reductase

Probab=97.82  E-value=1.5e-05  Score=85.02  Aligned_cols=33  Identities=24%  Similarity=0.358  Sum_probs=31.1

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-cCeeEEEec
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVER   83 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~   83 (523)
                      ..+|||||||+|++|..+|.+|++ |+||+|+|+
T Consensus        77 ~~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~  110 (558)
T PLN02546         77 HYDFDLFTIGAGSGGVRASRFASNFGASAAVCEL  110 (558)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence            457999999999999999999999 999999996

>KOG2852 consensus Possible oxidoreductase [General function prediction only]

Probab=97.81  E-value=0.00011  Score=68.88  Aligned_cols=61  Identities=16%  Similarity=0.299  Sum_probs=42.4

Q ss_pred             hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHhhC
Q 009873          228 AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSG  307 (523)
Q Consensus       228 ~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~SG  307 (523)
                      +.++.|++++.+ +|..+.-+..      |+.+|......+.   .+...+         ..+|||+|. +|++||..-+
T Consensus       157 a~k~~~V~lv~G-kv~ev~dEk~------r~n~v~~ae~~~t---i~~~d~---------~~ivvsaGP-WTskllp~~r  216 (380)
T KOG2852|consen  157 AEKRGGVKLVFG-KVKEVSDEKH------RINSVPKAEAEDT---IIKADV---------HKIVVSAGP-WTSKLLPFTR  216 (380)
T ss_pred             HHhhcCeEEEEe-eeEEeecccc------cccccchhhhcCc---eEEeee---------eEEEEecCC-Cchhhccccc
Confidence            455667999876 5777763334      8888866543343   445555         899999998 5999988765


Q ss_pred             C
Q 009873          308 I  308 (523)
Q Consensus       308 i  308 (523)
                      |
T Consensus       217 I  217 (380)
T KOG2852|consen  217 I  217 (380)
T ss_pred             c
Confidence            5

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.81  E-value=1.4e-05  Score=83.51  Aligned_cols=40  Identities=40%  Similarity=0.561  Sum_probs=35.2

Q ss_pred             cCCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCCC
Q 009873           50 AGKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPFG   89 (523)
Q Consensus        50 ~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~~   89 (523)
                      ..+..+|||||||++|++||+.|.+ |.+|+|||+-+..++
T Consensus        12 ~~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGG   52 (501)
T KOG0029|consen   12 AGKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGG   52 (501)
T ss_pred             ccCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCc
Confidence            3467899999999999999999999 999999999875543

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.81  E-value=1.6e-05  Score=83.68  Aligned_cols=34  Identities=24%  Similarity=0.419  Sum_probs=31.8

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .+||+||||+|++|+.+|.+|++ |++|+|+|++.
T Consensus         3 ~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~~   37 (466)
T PRK07818          3 THYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKKY   37 (466)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Confidence            36999999999999999999999 99999999974

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=97.80  E-value=1.5e-05  Score=81.94  Aligned_cols=35  Identities=34%  Similarity=0.436  Sum_probs=32.6

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .+.|||||||+|++|+++|+.|++ |.+|+|||+.+
T Consensus         5 ~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~   40 (388)
T PRK07494          5 KEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEP   40 (388)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCC
Confidence            456899999999999999999999 99999999975

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=97.80  E-value=1.4e-05  Score=83.53  Aligned_cols=33  Identities=30%  Similarity=0.601  Sum_probs=31.6

Q ss_pred             cccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           53 SFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        53 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      +|||||||||++|+.+|.+|++ |++|+|+|+++
T Consensus         3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~   36 (441)
T PRK08010          3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSN   36 (441)
T ss_pred             cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCC
Confidence            6999999999999999999999 99999999975

>PRK07538 hypothetical protein; Provisional

Probab=97.79  E-value=0.0002  Score=74.14  Aligned_cols=31  Identities=32%  Similarity=0.557  Sum_probs=29.8

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      ||+|||||++|+++|+.|++ |++|+|+||.+
T Consensus         2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~   33 (413)
T PRK07538          2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAP   33 (413)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCC
Confidence            89999999999999999999 99999999976

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.79  E-value=0.00016  Score=69.65  Aligned_cols=37  Identities=35%  Similarity=0.496  Sum_probs=33.6

Q ss_pred             ccCCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           49 VAGKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        49 ~~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      ...++||++|||+|.+|..+|+++++ |.||.|+|...
T Consensus        16 ~~~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f   53 (478)
T KOG0405|consen   16 ADVKDFDYLVIGGGSGGVASARRAASHGAKVALCELPF   53 (478)
T ss_pred             ccccccceEEEcCCcchhHHhHHHHhcCceEEEEecCC
Confidence            34568999999999999999999999 99999999874

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=97.75  E-value=0.00036  Score=73.45  Aligned_cols=31  Identities=29%  Similarity=0.582  Sum_probs=29.5

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      |+||||+|++|+.+|..|++ |++|+|+||+.
T Consensus         3 ~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~   34 (466)
T PRK07845          3 RIVIIGGGPGGYEAALVAAQLGADVTVIERDG   34 (466)
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEEccC
Confidence            79999999999999999999 99999999874

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=97.75  E-value=2e-05  Score=82.92  Aligned_cols=32  Identities=34%  Similarity=0.637  Sum_probs=30.4

Q ss_pred             cccEEEECCCCchHHHHhhhhc-cCeeEEEecC
Q 009873           53 SFDYIVVGGGTTGCPLAATLSD-NFSVLLVERG   84 (523)
Q Consensus        53 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G   84 (523)
                      +|||||||||++|+.+|.+|++ |++|+|||++
T Consensus         1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~~   33 (461)
T TIGR01350         1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEKE   33 (461)
T ss_pred             CccEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence            4999999999999999999999 9999999994

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=97.75  E-value=2.1e-05  Score=82.79  Aligned_cols=33  Identities=33%  Similarity=0.601  Sum_probs=31.0

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-cCeeEEEecC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERG   84 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G   84 (523)
                      .+||+||||||++|+.+|.+|++ |++|+|||++
T Consensus         2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~   35 (460)
T PRK06292          2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEKG   35 (460)
T ss_pred             CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            35999999999999999999999 9999999994

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=97.73  E-value=2.1e-05  Score=85.07  Aligned_cols=34  Identities=18%  Similarity=0.386  Sum_probs=31.9

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERG   84 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G   84 (523)
                      +++|||||||+|++|..+|.++++ |+||+|||++
T Consensus       114 ~~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~  148 (659)
T PTZ00153        114 DEEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGD  148 (659)
T ss_pred             cccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC
Confidence            458999999999999999999999 9999999975

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=97.73  E-value=2.3e-05  Score=79.07  Aligned_cols=36  Identities=47%  Similarity=0.707  Sum_probs=32.3

Q ss_pred             ccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCCC
Q 009873           54 FDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPFG   89 (523)
Q Consensus        54 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~~   89 (523)
                      +||+|||||++|+++|.+|++ |.+|+|||+....++
T Consensus         2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG   38 (377)
T TIGR00031         2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGG   38 (377)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCC
Confidence            799999999999999999998 899999999764433

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=97.71  E-value=3e-05  Score=81.68  Aligned_cols=33  Identities=24%  Similarity=0.450  Sum_probs=30.9

Q ss_pred             CcccEEEECCCCchHHHHhhhhc--cCeeEEEecC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD--NFSVLLVERG   84 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae--g~~VlvlE~G   84 (523)
                      ++||+||||+|++|..+|.++++  |+||+|||++
T Consensus         2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~   36 (486)
T TIGR01423         2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ   36 (486)
T ss_pred             CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence            57999999999999999999998  6999999985

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PRK14694 putative mercuric reductase; Provisional

Probab=97.70  E-value=3e-05  Score=81.67  Aligned_cols=36  Identities=25%  Similarity=0.447  Sum_probs=33.4

Q ss_pred             cCCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           50 AGKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        50 ~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      ...+|||||||||++|+++|.+|++ |++|+|+|++.
T Consensus         3 ~~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~   39 (468)
T PRK14694          3 SDNNLHIAVIGSGGSAMAAALKATERGARVTLIERGT   39 (468)
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEccc
Confidence            3568999999999999999999999 99999999974

>TIGR02053 MerA mercuric reductase

Probab=97.69  E-value=2.5e-05  Score=82.13  Aligned_cols=32  Identities=31%  Similarity=0.615  Sum_probs=30.7

Q ss_pred             ccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           54 FDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        54 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      ||+||||||++|..+|.+|++ |++|+|+||+.
T Consensus         1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~   33 (463)
T TIGR02053         1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP   33 (463)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc
Confidence            799999999999999999999 99999999975

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK13748 putative mercuric reductase; Provisional

Probab=97.69  E-value=2.9e-05  Score=83.78  Aligned_cols=34  Identities=26%  Similarity=0.438  Sum_probs=32.0

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .+|||||||+|++|+.+|.+|++ |++|+|||++.
T Consensus        97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~~  131 (561)
T PRK13748         97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERGT  131 (561)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCc
Confidence            47999999999999999999999 99999999974

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=97.67  E-value=2.7e-05  Score=79.87  Aligned_cols=33  Identities=36%  Similarity=0.597  Sum_probs=31.1

Q ss_pred             cccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           53 SFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        53 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      +|||+|||||++|+++|+.|++ |++|+|+|+.+
T Consensus         3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~   36 (384)
T PRK08849          3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE   36 (384)
T ss_pred             cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence            4899999999999999999999 99999999874

>PLN02463 lycopene beta cyclase

Probab=97.67  E-value=2.7e-05  Score=80.79  Aligned_cols=35  Identities=31%  Similarity=0.592  Sum_probs=32.3

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      ...|||||||+|++|+++|..|++ |++|+|||+.+
T Consensus        26 ~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~   61 (447)
T PLN02463         26 SRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSP   61 (447)
T ss_pred             ccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCc
Confidence            456999999999999999999999 99999999965

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=97.66  E-value=3.6e-05  Score=81.19  Aligned_cols=33  Identities=30%  Similarity=0.475  Sum_probs=31.1

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-cCeeEEEecC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERG   84 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G   84 (523)
                      .+||+||||+|++|+++|.+|++ |++|+|||++
T Consensus         3 ~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~   36 (475)
T PRK06327          3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAW   36 (475)
T ss_pred             cceeEEEECCCHHHHHHHHHHHhCCCeEEEEecc
Confidence            47999999999999999999999 9999999983

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=97.65  E-value=3.1e-05  Score=83.12  Aligned_cols=34  Identities=24%  Similarity=0.595  Sum_probs=31.9

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      +.|||||||||++|+++|..|++ |++|+|+|++.
T Consensus         3 ~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~   37 (555)
T TIGR03143         3 EIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDD   37 (555)
T ss_pred             CcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Confidence            46999999999999999999999 99999999975

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=97.64  E-value=3.3e-05  Score=75.71  Aligned_cols=34  Identities=35%  Similarity=0.657  Sum_probs=30.2

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-cCe-eEEEecCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-NFS-VLLVERGG   85 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~-VlvlE~G~   85 (523)
                      +.|||||||||++|++||..++. +++ ++|+|++.
T Consensus         2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~   37 (305)
T COG0492           2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGE   37 (305)
T ss_pred             ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCC
Confidence            46999999999999999999999 888 77777764

>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]

Probab=97.64  E-value=5.1e-05  Score=67.80  Aligned_cols=33  Identities=24%  Similarity=0.488  Sum_probs=30.0

Q ss_pred             cccEEEECCCCchHHHHhhhhc---cCeeEEEecCC
Q 009873           53 SFDYIVVGGGTTGCPLAATLSD---NFSVLLVERGG   85 (523)
Q Consensus        53 ~~DvIIVGsG~aG~~~A~~Lae---g~~VlvlE~G~   85 (523)
                      +-||||||+|.+|+++|+..++   +++|.+||..-
T Consensus        76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SV  111 (328)
T KOG2960|consen   76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSV  111 (328)
T ss_pred             ccceEEECCCccccceeeeeeccCCCceEEEEEeee
Confidence            5699999999999999999996   59999999874

>PLN02676 polyamine oxidase

Probab=97.60  E-value=5.2e-05  Score=79.89  Aligned_cols=38  Identities=34%  Similarity=0.480  Sum_probs=33.3

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-cC-eeEEEecCCCCCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-NF-SVLLVERGGSPFG   89 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g~-~VlvlE~G~~~~~   89 (523)
                      ..+||||||||++|+++|++|++ |. +|+|||+.+..++
T Consensus        25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG   64 (487)
T PLN02676         25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGG   64 (487)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCC
Confidence            46799999999999999999999 87 6999999875543

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=97.60  E-value=4.1e-05  Score=75.47  Aligned_cols=32  Identities=28%  Similarity=0.529  Sum_probs=30.5

Q ss_pred             ccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           54 FDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        54 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      |||||||||++|+.+|..|++ |.+|+|+|++.
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~   33 (300)
T TIGR01292         1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME   33 (300)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC
Confidence            799999999999999999998 99999999985

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=97.60  E-value=0.00035  Score=69.97  Aligned_cols=33  Identities=33%  Similarity=0.481  Sum_probs=26.1

Q ss_pred             cccEEEECCCCchHHHHhhhhc-c-CeeEEEecCC
Q 009873           53 SFDYIVVGGGTTGCPLAATLSD-N-FSVLLVERGG   85 (523)
Q Consensus        53 ~~DvIIVGsG~aG~~~A~~Lae-g-~~VlvlE~G~   85 (523)
                      .||+|+||.|++++++|..|.+ + .+++.|||.+
T Consensus         2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~   36 (341)
T PF13434_consen    2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRP   36 (341)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHH---EEEEES-S
T ss_pred             ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCC
Confidence            5899999999999999999999 5 9999999876

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=97.59  E-value=0.00078  Score=76.97  Aligned_cols=36  Identities=25%  Similarity=0.211  Sum_probs=32.7

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSP   87 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~   87 (523)
                      ...+|+|||||++|+++|..|++ |++|+|+|+++..
T Consensus       429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~  465 (1006)
T PRK12775        429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVV  465 (1006)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence            35799999999999999999999 9999999998644

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=97.58  E-value=5.9e-05  Score=75.70  Aligned_cols=37  Identities=30%  Similarity=0.443  Sum_probs=33.9

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSP   87 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~   87 (523)
                      .+..||||||+|.+||++|++|.+ |++|+|||..+..
T Consensus         5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~   42 (450)
T COG1231           5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRV   42 (450)
T ss_pred             CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCc
Confidence            567899999999999999999999 9999999998744

>PTZ00052 thioredoxin reductase; Provisional

Probab=97.58  E-value=4.5e-05  Score=80.76  Aligned_cols=33  Identities=27%  Similarity=0.428  Sum_probs=30.9

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-cCeeEEEecC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERG   84 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G   84 (523)
                      ..||+||||+|++|+.+|.+|++ |++|+|||++
T Consensus         4 ~~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~   37 (499)
T PTZ00052          4 FMYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYV   37 (499)
T ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCeEEEEecc
Confidence            46999999999999999999999 9999999973

>PRK14727 putative mercuric reductase; Provisional

Probab=97.57  E-value=6.1e-05  Score=79.51  Aligned_cols=35  Identities=14%  Similarity=0.302  Sum_probs=32.5

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      ...||+||||+|++|..+|.+|++ |.+|+|+|++.
T Consensus        14 ~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~   49 (479)
T PRK14727         14 KLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGAD   49 (479)
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC
Confidence            356999999999999999999999 99999999974

>PRK06475 salicylate hydroxylase; Provisional

Probab=97.56  E-value=0.00073  Score=69.71  Aligned_cols=31  Identities=23%  Similarity=0.504  Sum_probs=29.5

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      +|+|||||++|+++|+.|++ |++|+|+||.+
T Consensus         4 ~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~   35 (400)
T PRK06475          4 SPLIAGAGVAGLSAALELAARGWAVTIIEKAQ   35 (400)
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence            69999999999999999999 99999999975

>PLN02268 probable polyamine oxidase

Probab=97.56  E-value=5.1e-05  Score=79.20  Aligned_cols=35  Identities=40%  Similarity=0.593  Sum_probs=32.0

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPFG   89 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~~   89 (523)
                      +|||||||.+|+++|++|.+ |++|+|||+.+..++
T Consensus         2 ~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GG   37 (435)
T PLN02268          2 SVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGG   37 (435)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCc
Confidence            79999999999999999998 899999999885544

>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=97.55  E-value=0.00036  Score=69.93  Aligned_cols=35  Identities=31%  Similarity=0.615  Sum_probs=31.8

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      +..|||||||+|-|||-+|..+|. |.+.++|-..-
T Consensus        26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~l   61 (679)
T KOG2311|consen   26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNL   61 (679)
T ss_pred             CCcccEEEECCCccchHHHHHHHhcCCceEEeeccc
Confidence            678999999999999999999999 99999997653

>PLN02576 protoporphyrinogen oxidase

Probab=97.55  E-value=5.6e-05  Score=80.34  Aligned_cols=39  Identities=33%  Similarity=0.403  Sum_probs=34.1

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc--cCeeEEEecCCCCCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD--NFSVLLVERGGSPFG   89 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae--g~~VlvlE~G~~~~~   89 (523)
                      ...+||||||||.+|+++|++|++  |.+|+|+|+.+..++
T Consensus        10 ~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGG   50 (496)
T PLN02576         10 ASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGG   50 (496)
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCC
Confidence            456799999999999999999987  799999999875543

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=97.54  E-value=5.3e-05  Score=77.41  Aligned_cols=32  Identities=16%  Similarity=0.330  Sum_probs=30.6

Q ss_pred             ccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           54 FDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        54 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      +||+|||||++|+++|+.|++ |++|+|+|+.+
T Consensus         2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~   34 (374)
T PRK06617          2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKS   34 (374)
T ss_pred             ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCC
Confidence            799999999999999999999 99999999975

>PRK09897 hypothetical protein; Provisional

Probab=97.52  E-value=0.00042  Score=73.31  Aligned_cols=32  Identities=25%  Similarity=0.353  Sum_probs=28.8

Q ss_pred             ccEEEECCCCchHHHHhhhhc-c--CeeEEEecCC
Q 009873           54 FDYIVVGGGTTGCPLAATLSD-N--FSVLLVERGG   85 (523)
Q Consensus        54 ~DvIIVGsG~aG~~~A~~Lae-g--~~VlvlE~G~   85 (523)
                      .+|+|||+|++|+++|.+|++ +  .+|+|+|++.
T Consensus         2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~   36 (534)
T PRK09897          2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQAD   36 (534)
T ss_pred             CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCC
Confidence            479999999999999999987 3  6999999976

>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family

Probab=97.48  E-value=0.00071  Score=68.22  Aligned_cols=88  Identities=14%  Similarity=0.025  Sum_probs=54.4

Q ss_pred             HHHHHHHHHcCCCCCCCCCcCCCCcceeeeeEEcCCCeeechHhhhh-hCCCCCeEEEeccEEEEEEEcCCCCCCCceee
Q 009873          181 SVVEFGLLEAGILPYNGYSLEHIEGTKIGGTAFDQCGKRHTSADLLE-AGNPKNLVVLLNATVNNIIFSNNGKANESRAH  259 (523)
Q Consensus       181 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~-~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~  259 (523)
                      .++.+.+.+.|++....          ..+..++......+..+.|. .+++.|++|+++++|++|  +++      . .
T Consensus        57 ~d~~~fF~~~Gi~~~~e----------~~grvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~~------~-~  117 (376)
T TIGR03862        57 VALQDWARGLGIETFVG----------SSGRVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QGG------T-L  117 (376)
T ss_pred             HHHHHHHHHCCCceEEC----------CCCEECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eCC------c-E
Confidence            55778888999841110          01123333333333444443 778899999999999999  332      2 3


Q ss_pred             EEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHH
Q 009873          260 GIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQL  302 (523)
Q Consensus       260 GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~l  302 (523)
                      .|.+..  +.    ..+.+         +.||||+|+...|.+
T Consensus       118 ~v~~~~--~~----~~~~a---------~~vIlAtGG~s~p~~  145 (376)
T TIGR03862       118 RFETPD--GQ----STIEA---------DAVVLALGGASWSQL  145 (376)
T ss_pred             EEEECC--Cc----eEEec---------CEEEEcCCCcccccc
Confidence            454422  22    23666         999999999877764

This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=97.48  E-value=7e-05  Score=78.52  Aligned_cols=35  Identities=29%  Similarity=0.417  Sum_probs=31.2

Q ss_pred             cEEEECCCCchHHHHhhhhc-c--CeeEEEecCCCCCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-N--FSVLLVERGGSPFG   89 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g--~~VlvlE~G~~~~~   89 (523)
                      +|||||||++|+++|+.|++ |  ++|+|+|+.+..++
T Consensus         2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GG   39 (451)
T PRK11883          2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGG   39 (451)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcc
Confidence            59999999999999999998 7  89999999875543

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=97.46  E-value=0.0001  Score=77.81  Aligned_cols=32  Identities=34%  Similarity=0.606  Sum_probs=30.7

Q ss_pred             cccEEEECCCCchHHHHhhhhc-cCeeEEEecC
Q 009873           53 SFDYIVVGGGTTGCPLAATLSD-NFSVLLVERG   84 (523)
Q Consensus        53 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G   84 (523)
                      +||+||||+|++|..+|.+|++ |++|+|||+.
T Consensus         2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~   34 (484)
T TIGR01438         2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFV   34 (484)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            6999999999999999999999 9999999985

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=97.45  E-value=8.1e-05  Score=76.58  Aligned_cols=33  Identities=42%  Similarity=0.649  Sum_probs=30.5

Q ss_pred             CcccEEEECCCCchHHHHhhhhc----cCeeEEEecC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD----NFSVLLVERG   84 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae----g~~VlvlE~G   84 (523)
                      ..+||+|||||++|+++|+.|++    |.+|+|+||-
T Consensus         2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~   38 (395)
T PRK05732          2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF   38 (395)
T ss_pred             CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence            35899999999999999999976    8999999995

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=97.44  E-value=0.0044  Score=63.49  Aligned_cols=58  Identities=21%  Similarity=0.257  Sum_probs=44.1

Q ss_pred             hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCc
Q 009873          228 AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGAL  297 (523)
Q Consensus       228 ~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~  297 (523)
                      ..+..||++..+++|++|.++..+.  ...|+++++.. +|+   ..+|..      .+.+.|++.-|.+
T Consensus       216 ~L~~~GV~F~~~t~V~di~~~~~~~--~~~~~~i~~~~-~g~---~~~i~l------~~~DlV~vT~GS~  273 (500)
T PF06100_consen  216 YLKSQGVDFRFNTKVTDIDFDITGD--KKTATRIHIEQ-DGK---EETIDL------GPDDLVFVTNGSM  273 (500)
T ss_pred             HHHHCCCEEECCCEEEEEEEEccCC--CeeEEEEEEEc-CCC---eeEEEe------CCCCEEEEECCcc
Confidence            5678999999999999999975432  23678888775 676   556654      4578899988875

>TIGR02352 thiamin_ThiO glycine oxidase ThiO

Probab=97.42  E-value=0.00035  Score=70.05  Aligned_cols=52  Identities=21%  Similarity=0.288  Sum_probs=40.6

Q ss_pred             hhCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHH
Q 009873          227 EAGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQL  302 (523)
Q Consensus       227 ~~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~l  302 (523)
                      ..+.+.|++++++++|+.|..+++      ++.+|...  +|.      +.+         +.||+|+|++ ++.|
T Consensus       145 ~~~~~~g~~~~~~~~v~~i~~~~~------~~~~v~~~--~g~------~~a---------~~vV~a~G~~-~~~l  196 (337)
T TIGR02352       145 KALEKLGVEIIEHTEVQHIEIRGE------KVTAIVTP--SGD------VQA---------DQVVLAAGAW-AGEL  196 (337)
T ss_pred             HHHHHcCCEEEccceEEEEEeeCC------EEEEEEcC--CCE------EEC---------CEEEEcCChh-hhhc
Confidence            366778999999999999998765      78888643  243      776         9999999985 5554

This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.

>PRK07233 hypothetical protein; Provisional

Probab=97.41  E-value=0.00011  Score=76.66  Aligned_cols=35  Identities=29%  Similarity=0.402  Sum_probs=32.1

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPFG   89 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~~   89 (523)
                      +|||||||++|+++|+.|++ |++|+|||+.+..++
T Consensus         1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG   36 (434)
T PRK07233          1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGG   36 (434)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCC
Confidence            58999999999999999998 999999999986654

>TIGR03452 mycothione_red mycothione reductase

Probab=97.41  E-value=0.00012  Score=76.55  Aligned_cols=32  Identities=22%  Similarity=0.501  Sum_probs=27.8

Q ss_pred             cccEEEECCCCchHHHHhhhhccCeeEEEecCC
Q 009873           53 SFDYIVVGGGTTGCPLAATLSDNFSVLLVERGG   85 (523)
Q Consensus        53 ~~DvIIVGsG~aG~~~A~~Laeg~~VlvlE~G~   85 (523)
                      +||+||||+|++|..+|.++ .|+||+|+|++.
T Consensus         2 ~yD~vvIG~G~~g~~aa~~~-~g~~V~lie~~~   33 (452)
T TIGR03452         2 HYDLIIIGTGSGNSIPDPRF-ADKRIAIVEKGT   33 (452)
T ss_pred             CcCEEEECCCHHHHHHHHHH-CCCeEEEEeCCC
Confidence            69999999999998887654 399999999864

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=97.38  E-value=0.00014  Score=73.96  Aligned_cols=31  Identities=39%  Similarity=0.723  Sum_probs=29.4

Q ss_pred             cEEEECCCCchHHHHhhhhc---cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD---NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae---g~~VlvlE~G~   85 (523)
                      ||||||||++|+++|.+|++   |++|+|||+++
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~   34 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGR   34 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            89999999999999999986   79999999986

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>PLN02568 polyamine oxidase

Probab=97.35  E-value=0.00015  Score=77.21  Aligned_cols=38  Identities=29%  Similarity=0.453  Sum_probs=33.4

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-c-----CeeEEEecCCCCCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-N-----FSVLLVERGGSPFG   89 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g-----~~VlvlE~G~~~~~   89 (523)
                      +..||||||||++|+++|.+|++ |     ++|+|+|+....++
T Consensus         4 ~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GG   47 (539)
T PLN02568          4 KKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGG   47 (539)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCC
Confidence            45799999999999999999997 6     89999999986544

>PRK10262 thioredoxin reductase; Provisional

Probab=97.35  E-value=0.00013  Score=72.86  Aligned_cols=35  Identities=20%  Similarity=0.330  Sum_probs=31.8

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .+.+||||||+|++|+.+|..|++ |++|+++|+..
T Consensus         4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~   39 (321)
T PRK10262          4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGME   39 (321)
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeec
Confidence            467999999999999999999998 99999999653

>PRK07846 mycothione reductase; Reviewed

Probab=97.33  E-value=0.00017  Score=75.46  Aligned_cols=32  Identities=25%  Similarity=0.563  Sum_probs=28.3

Q ss_pred             cccEEEECCCCchHHHHhhhhccCeeEEEecCC
Q 009873           53 SFDYIVVGGGTTGCPLAATLSDNFSVLLVERGG   85 (523)
Q Consensus        53 ~~DvIIVGsG~aG~~~A~~Laeg~~VlvlE~G~   85 (523)
                      +||+||||+|++|..+|.++ .|+||+|+|++.
T Consensus         1 ~yD~vVIG~G~~g~~aa~~~-~G~~V~lie~~~   32 (451)
T PRK07846          1 HYDLIIIGTGSGNSILDERF-ADKRIAIVEKGT   32 (451)
T ss_pred             CCCEEEECCCHHHHHHHHHH-CCCeEEEEeCCC
Confidence            48999999999999998774 399999999974

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=97.33  E-value=0.00017  Score=77.84  Aligned_cols=36  Identities=31%  Similarity=0.443  Sum_probs=33.1

Q ss_pred             cCCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           50 AGKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        50 ~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      ..+.++|+|||||++|+++|..|++ |++|+|+||..
T Consensus        78 ~~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~  114 (668)
T PLN02927         78 KKKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL  114 (668)
T ss_pred             ccCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence            3567999999999999999999999 99999999974

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=97.30  E-value=0.00016  Score=76.21  Aligned_cols=36  Identities=28%  Similarity=0.372  Sum_probs=31.9

Q ss_pred             ccEEEECCCCchHHHHhhhhc-----cCeeEEEecCCCCCC
Q 009873           54 FDYIVVGGGTTGCPLAATLSD-----NFSVLLVERGGSPFG   89 (523)
Q Consensus        54 ~DvIIVGsG~aG~~~A~~Lae-----g~~VlvlE~G~~~~~   89 (523)
                      .||||||||++|+++|++|++     |++|+|+|+.+..++
T Consensus         3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG   43 (462)
T TIGR00562         3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGG   43 (462)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcc
Confidence            589999999999999999986     689999999875543

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=97.30  E-value=0.00015  Score=66.81  Aligned_cols=31  Identities=32%  Similarity=0.648  Sum_probs=29.3

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      ||||||||++|+.+|.+|++ +.+|+|+|+.+
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~   32 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSP   32 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEESSSS
T ss_pred             CEEEEecHHHHHHHHHHHhcCCCeEEEEeccc
Confidence            79999999999999999998 89999998875

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=97.21  E-value=0.0003  Score=76.57  Aligned_cols=36  Identities=36%  Similarity=0.529  Sum_probs=32.9

Q ss_pred             cCCcccEEEECCCCchHHHHhhhhc--cCeeEEEecCC
Q 009873           50 AGKSFDYIVVGGGTTGCPLAATLSD--NFSVLLVERGG   85 (523)
Q Consensus        50 ~~~~~DvIIVGsG~aG~~~A~~Lae--g~~VlvlE~G~   85 (523)
                      +..++||+|||||++|+++|+.|++  |.+|+||||.+
T Consensus        29 ~~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~   66 (634)
T PRK08294         29 LPDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKP   66 (634)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCC
Confidence            3568999999999999999999998  79999999975

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=97.20  E-value=0.00022  Score=72.36  Aligned_cols=32  Identities=28%  Similarity=0.259  Sum_probs=30.3

Q ss_pred             ccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           54 FDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        54 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      -||+|||||.+|+.+|+.|++ |++|+|+|+.+
T Consensus         3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp   35 (436)
T PRK05335          3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRP   35 (436)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccC
Confidence            489999999999999999999 99999999876

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=97.16  E-value=0.00028  Score=72.18  Aligned_cols=34  Identities=29%  Similarity=0.397  Sum_probs=31.7

Q ss_pred             EEEECCCCchHHHHhhhhc-cCeeEEEecCCCCCC
Q 009873           56 YIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPFG   89 (523)
Q Consensus        56 vIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~~   89 (523)
                      |+|+|||.||+++|++|++ |++|.|+|+++..++
T Consensus         3 Vai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GG   37 (485)
T COG3349           3 VAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGG   37 (485)
T ss_pred             EEEEcccHHHHHHHHHHHhCCCceEEEeccCccCc
Confidence            8999999999999999999 999999999986654

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=97.14  E-value=0.00032  Score=70.53  Aligned_cols=33  Identities=42%  Similarity=0.662  Sum_probs=31.1

Q ss_pred             cccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           53 SFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        53 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      +=+++|||+|.+|+.||+.|++ |.+|.|+||.+
T Consensus       124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKep  157 (622)
T COG1148         124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEP  157 (622)
T ss_pred             ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCC
Confidence            4469999999999999999999 99999999997

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=97.11  E-value=0.00031  Score=73.93  Aligned_cols=35  Identities=31%  Similarity=0.494  Sum_probs=30.4

Q ss_pred             cEEEECCCCchHHHHhhhhc-c------CeeEEEecCCCCCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-N------FSVLLVERGGSPFG   89 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g------~~VlvlE~G~~~~~   89 (523)
                      +|||||||++|+++|++|++ +      .+|+|||+.+..++
T Consensus         3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GG   44 (463)
T PRK12416          3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGG   44 (463)
T ss_pred             eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccc
Confidence            59999999999999999987 3      78999999875543

>TIGR02731 phytoene_desat phytoene desaturase

Probab=97.09  E-value=0.00034  Score=73.42  Aligned_cols=35  Identities=23%  Similarity=0.330  Sum_probs=31.4

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPFG   89 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~~   89 (523)
                      +|+|||+|++|+++|++|++ |++|+|+|+.+..++
T Consensus         1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG   36 (453)
T TIGR02731         1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGG   36 (453)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Confidence            48999999999999999999 999999999875443

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.09  E-value=0.0019  Score=62.42  Aligned_cols=61  Identities=18%  Similarity=0.272  Sum_probs=51.5

Q ss_pred             hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecC-CCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHhh
Q 009873          228 AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSD-GSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLS  306 (523)
Q Consensus       228 ~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~-g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~S  306 (523)
                      .+.-+|++|++|++-+.|.=+++      +|+|++|+++. |+   .+.+..         ..|.+--|-+-++.+|.-+
T Consensus       399 l~sl~Nv~ii~na~Ttei~Gdg~------kV~Gl~Y~dr~sge---~~~l~L---------eGvFVqIGL~PNT~WLkg~  460 (520)
T COG3634         399 LRSLPNVTIITNAQTTEVKGDGD------KVTGLEYRDRVSGE---EHHLEL---------EGVFVQIGLLPNTEWLKGA  460 (520)
T ss_pred             HhcCCCcEEEecceeeEEecCCc------eecceEEEeccCCc---eeEEEe---------eeeEEEEecccChhHhhch
Confidence            45568999999999999987766      99999999865 66   788887         8899999988888888755

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=97.08  E-value=0.00045  Score=77.73  Aligned_cols=37  Identities=22%  Similarity=0.338  Sum_probs=33.2

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPF   88 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~   88 (523)
                      ...||+|||||+||++||+.|++ |++|+|+|+.+..+
T Consensus       536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lG  573 (1012)
T TIGR03315       536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPG  573 (1012)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccC
Confidence            45799999999999999999999 99999999986443

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=97.00  E-value=0.00051  Score=65.84  Aligned_cols=33  Identities=30%  Similarity=0.584  Sum_probs=31.8

Q ss_pred             cccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           53 SFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        53 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      +|||+|||+|.+|+++|++|++ |+++.+|-+|.
T Consensus         2 ~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQ   35 (421)
T COG3075           2 NFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQ   35 (421)
T ss_pred             cccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCCh
Confidence            6999999999999999999999 99999999996

>PRK12831 putative oxidoreductase; Provisional

Probab=97.00  E-value=0.00062  Score=71.44  Aligned_cols=37  Identities=27%  Similarity=0.423  Sum_probs=33.1

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSP   87 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~   87 (523)
                      ....||+|||||++|+++|+.|++ |++|+|+|+....
T Consensus       138 ~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~  175 (464)
T PRK12831        138 KKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEP  175 (464)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence            456799999999999999999999 9999999997643

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=96.98  E-value=0.00057  Score=71.76  Aligned_cols=32  Identities=28%  Similarity=0.495  Sum_probs=30.0

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGGS   86 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~   86 (523)
                      ++||||+|++|.++|.+|++ |++|+||||+..
T Consensus         2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~~   34 (458)
T PRK06912          2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEADL   34 (458)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEECCcc
Confidence            69999999999999999999 999999999863

>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]

Probab=96.95  E-value=0.00072  Score=67.10  Aligned_cols=35  Identities=29%  Similarity=0.519  Sum_probs=31.3

Q ss_pred             cccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCC
Q 009873           53 SFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSP   87 (523)
Q Consensus        53 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~   87 (523)
                      +-+|||||||.+|+++|..|++ |.+|+|+|+-..+
T Consensus         2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~   37 (420)
T KOG2614|consen    2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDP   37 (420)
T ss_pred             CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeecccc
Confidence            3579999999999999999999 9999999996543

>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=96.90  E-value=0.00082  Score=64.54  Aligned_cols=35  Identities=29%  Similarity=0.455  Sum_probs=32.3

Q ss_pred             cCCcccEEEECCCCchHHHHhhhhc-cCeeEEEecC
Q 009873           50 AGKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERG   84 (523)
Q Consensus        50 ~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G   84 (523)
                      ...+||.||||+|.+|+++|.+++. |+||.+|+-=
T Consensus        16 ~sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV   51 (503)
T KOG4716|consen   16 SSYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFV   51 (503)
T ss_pred             ccCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeec
Confidence            4578999999999999999999999 9999999865

>PLN02529 lysine-specific histone demethylase 1

Probab=96.86  E-value=0.0008  Score=73.60  Aligned_cols=38  Identities=32%  Similarity=0.470  Sum_probs=33.9

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPF   88 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~   88 (523)
                      ....||+|||||++|+++|..|++ |++|+|+|+.+..+
T Consensus       158 ~~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~G  196 (738)
T PLN02529        158 GTEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPG  196 (738)
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCc
Confidence            456899999999999999999999 99999999987443

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=96.86  E-value=0.026  Score=49.75  Aligned_cols=29  Identities=17%  Similarity=0.458  Sum_probs=25.0

Q ss_pred             EEECCCCchHHHHhhhhc------cCeeEEEecCC
Q 009873           57 IVVGGGTTGCPLAATLSD------NFSVLLVERGG   85 (523)
Q Consensus        57 IIVGsG~aG~~~A~~Lae------g~~VlvlE~G~   85 (523)
                      .|||+|++|++++.+|.+      ..+|.|+|+.+
T Consensus         1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~   35 (156)
T PF13454_consen    1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSP   35 (156)
T ss_pred             CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCC
Confidence            489999999999999965      26899999964

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=96.85  E-value=0.00072  Score=69.12  Aligned_cols=32  Identities=31%  Similarity=0.402  Sum_probs=30.0

Q ss_pred             ccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           54 FDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        54 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .||+|||||.+|+.+|+.|++ |.+|+|+|+.+
T Consensus         1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp   33 (433)
T TIGR00137         1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRP   33 (433)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEeccc
Confidence            389999999999999999999 99999999875

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Probab=96.82  E-value=0.0078  Score=61.61  Aligned_cols=52  Identities=17%  Similarity=0.192  Sum_probs=36.8

Q ss_pred             hhCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHH
Q 009873          227 EAGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLL  303 (523)
Q Consensus       227 ~~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lL  303 (523)
                      ..+.+ |+++++++.|++|..+++      + ..|+.  .+|.     .+.+         +.||+|+|++ ++.++
T Consensus       143 ~~~~~-G~~i~~~~~V~~i~~~~~------~-~~v~t--~~g~-----~~~a---------~~vV~a~G~~-~~~l~  194 (381)
T TIGR03197       143 AHAGI-RLTLHFNTEITSLERDGE------G-WQLLD--ANGE-----VIAA---------SVVVLANGAQ-AGQLA  194 (381)
T ss_pred             hccCC-CcEEEeCCEEEEEEEcCC------e-EEEEe--CCCC-----EEEc---------CEEEEcCCcc-ccccc
Confidence            35667 999999999999987654      4 33433  2354     3566         9999999985 55544

In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=96.79  E-value=0.0011  Score=73.07  Aligned_cols=39  Identities=31%  Similarity=0.458  Sum_probs=34.3

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPFG   89 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~~   89 (523)
                      ....||||||||++|+++|+.|++ |++|+|+|+....++
T Consensus       236 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GG  275 (808)
T PLN02328        236 VEPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGG  275 (808)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCC
Confidence            456799999999999999999999 999999999875543

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=96.78  E-value=0.001  Score=68.20  Aligned_cols=34  Identities=29%  Similarity=0.423  Sum_probs=30.6

Q ss_pred             EEEECCCCchHHHHhhhhc-c--CeeEEEecCCCCCC
Q 009873           56 YIVVGGGTTGCPLAATLSD-N--FSVLLVERGGSPFG   89 (523)
Q Consensus        56 vIIVGsG~aG~~~A~~Lae-g--~~VlvlE~G~~~~~   89 (523)
                      ++|||||.+|+++|++|.+ +  ..|.|+|+++..++
T Consensus         3 i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG   39 (444)
T COG1232           3 IAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGG   39 (444)
T ss_pred             EEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCc
Confidence            8999999999999999999 6  89999999975543

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=96.77  E-value=0.0012  Score=69.12  Aligned_cols=37  Identities=27%  Similarity=0.369  Sum_probs=33.1

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSP   87 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~   87 (523)
                      ...+||+|||+|++|+++|..|++ |++|+|+|+.+..
T Consensus       131 ~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~  168 (449)
T TIGR01316       131 STHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKP  168 (449)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            356899999999999999999999 9999999997643

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=96.76  E-value=0.0012  Score=69.58  Aligned_cols=37  Identities=27%  Similarity=0.339  Sum_probs=33.1

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSP   87 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~   87 (523)
                      ....||+|||+|++|+.+|..|++ |++|+|+|+.+..
T Consensus       141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~  178 (471)
T PRK12810        141 RTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRI  178 (471)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence            345799999999999999999999 9999999998644

>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]

Probab=96.70  E-value=0.0013  Score=66.32  Aligned_cols=36  Identities=22%  Similarity=0.394  Sum_probs=31.3

Q ss_pred             cccEEEECCCCchHHHHhhhhc-c-CeeEEEecCCCCC
Q 009873           53 SFDYIVVGGGTTGCPLAATLSD-N-FSVLLVERGGSPF   88 (523)
Q Consensus        53 ~~DvIIVGsG~aG~~~A~~Lae-g-~~VlvlE~G~~~~   88 (523)
                      +.-+||||||++|++||.+|-+ | .+|+|+|..+..+
T Consensus        21 ~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIG   58 (498)
T KOG0685|consen   21 NAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIG   58 (498)
T ss_pred             CceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccC
Confidence            3469999999999999999997 5 8999999987544

>PLN02612 phytoene desaturase

Probab=96.69  E-value=0.0015  Score=70.37  Aligned_cols=37  Identities=24%  Similarity=0.406  Sum_probs=33.1

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSP   87 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~   87 (523)
                      ....||+|||+|.+|+++|++|++ |++|+|+|+....
T Consensus        91 ~~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~  128 (567)
T PLN02612         91 AKPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVL  128 (567)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence            345799999999999999999999 9999999997644

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=96.68  E-value=0.0013  Score=69.32  Aligned_cols=35  Identities=29%  Similarity=0.314  Sum_probs=31.4

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPFG   89 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~~   89 (523)
                      +|+|||+|.+|+++|++|++ |++|+|+|+.+..++
T Consensus         1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG   36 (474)
T TIGR02732         1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGG   36 (474)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCc
Confidence            48999999999999999999 999999999875543

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>PLN02852 ferredoxin-NADP+ reductase

Probab=96.64  E-value=0.0018  Score=67.76  Aligned_cols=37  Identities=32%  Similarity=0.456  Sum_probs=32.5

Q ss_pred             CcccEEEECCCCchHHHHhhhhc---cCeeEEEecCCCCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD---NFSVLLVERGGSPF   88 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae---g~~VlvlE~G~~~~   88 (523)
                      ....|+|||||++|+.+|..|++   |++|.|+|+.+.++
T Consensus        25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pg   64 (491)
T PLN02852         25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPF   64 (491)
T ss_pred             CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCc
Confidence            45679999999999999999984   79999999998554

>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function

Probab=96.63  E-value=0.0013  Score=67.43  Aligned_cols=41  Identities=34%  Similarity=0.446  Sum_probs=31.2

Q ss_pred             cCCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCCCC
Q 009873           50 AGKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPFGN   90 (523)
Q Consensus        50 ~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~~~   90 (523)
                      ++++|||||+|.|..-+.+|..|+. |+|||.||+.+..++.
T Consensus         1 m~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~   42 (438)
T PF00996_consen    1 MDEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGE   42 (438)
T ss_dssp             --SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGG
T ss_pred             CCccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCc
Confidence            3679999999999999999999998 9999999999977653

This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=96.62  E-value=0.0019  Score=49.93  Aligned_cols=31  Identities=39%  Similarity=0.650  Sum_probs=29.3

Q ss_pred             EEEECCCCchHHHHhhhhc-cCeeEEEecCCC
Q 009873           56 YIVVGGGTTGCPLAATLSD-NFSVLLVERGGS   86 (523)
Q Consensus        56 vIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~   86 (523)
                      ++|||||..|+-+|..|++ |.+|.|||+.+.
T Consensus         2 vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~   33 (80)
T PF00070_consen    2 VVVIGGGFIGIELAEALAELGKEVTLIERSDR   33 (80)
T ss_dssp             EEEESSSHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred             EEEECcCHHHHHHHHHHHHhCcEEEEEeccch
Confidence            7999999999999999999 999999999973

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=96.59  E-value=0.0015  Score=67.81  Aligned_cols=31  Identities=32%  Similarity=0.566  Sum_probs=28.8

Q ss_pred             cEEEECCCCchHHHHhhhhc-c-CeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-N-FSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g-~~VlvlE~G~   85 (523)
                      .|+|||||++|+++|+.|++ | .+|+|+||.+
T Consensus         2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~   34 (414)
T TIGR03219         2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAP   34 (414)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCC
Confidence            58999999999999999998 7 6999999975

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=96.58  E-value=0.0018  Score=73.41  Aligned_cols=36  Identities=28%  Similarity=0.200  Sum_probs=32.4

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSP   87 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~   87 (523)
                      ...+|+|||||+||+++|+.|++ |++|+|+|+.+..
T Consensus       305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~  341 (944)
T PRK12779        305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDL  341 (944)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Confidence            35689999999999999999999 9999999998644

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=96.56  E-value=0.0021  Score=67.50  Aligned_cols=37  Identities=22%  Similarity=0.355  Sum_probs=33.0

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSP   87 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~   87 (523)
                      ....+|+|||||++|+.+|..|++ |++|+|+|+.+..
T Consensus       138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~  175 (457)
T PRK11749        138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKA  175 (457)
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCC
Confidence            345799999999999999999999 9999999998643

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=96.55  E-value=0.002  Score=72.01  Aligned_cols=36  Identities=22%  Similarity=0.368  Sum_probs=32.3

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGS   86 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~   86 (523)
                      ....||+|||||++|+++|..|++ |++|+|+|+.+.
T Consensus       429 ~~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~  465 (752)
T PRK12778        429 KNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHE  465 (752)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence            346799999999999999999999 999999999653

>PLN02487 zeta-carotene desaturase

Probab=96.53  E-value=0.0025  Score=68.12  Aligned_cols=37  Identities=22%  Similarity=0.226  Sum_probs=33.3

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPF   88 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~   88 (523)
                      +..+|+|||+|++|+++|++|++ |++|+|+|+.+...
T Consensus        74 ~~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~g  111 (569)
T PLN02487         74 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIG  111 (569)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCC
Confidence            44699999999999999999998 99999999987554

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=96.53  E-value=0.0021  Score=72.26  Aligned_cols=37  Identities=24%  Similarity=0.276  Sum_probs=32.9

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPF   88 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~   88 (523)
                      ..-+|+|||||++|+++|+.|++ |++|+|+|+.+..+
T Consensus       538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~G  575 (1019)
T PRK09853        538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAG  575 (1019)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccC
Confidence            45689999999999999999999 99999999987543

>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]

Probab=96.53  E-value=0.0023  Score=63.40  Aligned_cols=37  Identities=38%  Similarity=0.696  Sum_probs=32.1

Q ss_pred             ccCCcccEEEECCCCchHHHHhhhhc-----cCeeEEEecCC
Q 009873           49 VAGKSFDYIVVGGGTTGCPLAATLSD-----NFSVLLVERGG   85 (523)
Q Consensus        49 ~~~~~~DvIIVGsG~aG~~~A~~Lae-----g~~VlvlE~G~   85 (523)
                      ...+.|||||||||+.|.+.|..|..     .+||+++|.+.
T Consensus        32 ~~~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~   73 (481)
T KOG3855|consen   32 TDTAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGD   73 (481)
T ss_pred             CCcccCCEEEECCchHHHHHHHHhccCCccchheeeEEeccc
Confidence            34558999999999999999999975     28999999995

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=96.53  E-value=0.002  Score=70.80  Aligned_cols=36  Identities=19%  Similarity=0.306  Sum_probs=32.4

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSP   87 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~   87 (523)
                      ...+|+|||||++|+++|..|++ |++|+|+|+.+..
T Consensus       326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~  362 (654)
T PRK12769        326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEI  362 (654)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            45699999999999999999999 9999999998643

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=96.51  E-value=0.022  Score=58.28  Aligned_cols=31  Identities=39%  Similarity=0.569  Sum_probs=29.2

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .++|||+|..|+-+|..|++ |.+|.++|+++
T Consensus       143 ~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~  174 (377)
T PRK04965        143 RVLVVGGGLIGTELAMDLCRAGKAVTLVDNAA  174 (377)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCeEEEEecCC
Confidence            69999999999999999998 89999999986

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=96.50  E-value=0.015  Score=61.21  Aligned_cols=32  Identities=22%  Similarity=0.427  Sum_probs=29.6

Q ss_pred             ccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           54 FDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        54 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      -+++|||+|..|+-+|..|++ |.+|.|+|+++
T Consensus       171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~  203 (461)
T TIGR01350       171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLD  203 (461)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC
Confidence            379999999999999999998 99999999985

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>KOG2403 consensus Succinate dehydrogenase, flavoprotein subunit [Energy production and conversion]

Probab=96.43  E-value=0.0043  Score=63.56  Aligned_cols=35  Identities=23%  Similarity=0.360  Sum_probs=31.5

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      +..||.+|||+|.+|+-+|..|+| |.+|.++-+-.
T Consensus        53 ~~~~da~vvgaggAGlr~~~~lae~g~~~a~itkl~   88 (642)
T KOG2403|consen   53 DHTYDAVVVGAGGAGLRAARGLAELGEKTAVITKLF   88 (642)
T ss_pred             eeeceeEEEeccchhhhhhhhhhhcCceEEEEeccc
Confidence            345999999999999999999999 89999998764

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=96.38  E-value=0.038  Score=58.93  Aligned_cols=56  Identities=21%  Similarity=0.356  Sum_probs=42.6

Q ss_pred             CCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEec-CCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHH
Q 009873          231 PKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKS-DGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLL  304 (523)
Q Consensus       231 ~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~-~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl  304 (523)
                      +.|+++++++.|+++.-+++      ++.+|++.+. .|+   ..++.+         +.||+|.|..-++.+|.
T Consensus       400 ~~gV~i~~~~~v~~i~~~~~------~v~~v~~~~~~~~~---~~~i~~---------D~vi~a~G~~Pn~~~l~  456 (515)
T TIGR03140       400 LPNVDILTSAQTTEIVGDGD------KVTGIRYQDRNSGE---EKQLDL---------DGVFVQIGLVPNTEWLK  456 (515)
T ss_pred             CCCCEEEECCeeEEEEcCCC------EEEEEEEEECCCCc---EEEEEc---------CEEEEEeCCcCCchHHh
Confidence            36899999999999976544      7888988763 244   456776         99999999876666654

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=96.38  E-value=0.036  Score=59.23  Aligned_cols=57  Identities=18%  Similarity=0.303  Sum_probs=44.4

Q ss_pred             CCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEec-CCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHh
Q 009873          231 PKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKS-DGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLL  305 (523)
Q Consensus       231 ~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~-~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~  305 (523)
                      ..|+++++++.++++..+++      ++++|++.+. +|+   ..++.+         +.|+++.|...++.+|..
T Consensus       399 ~~gI~i~~~~~v~~i~~~~g------~v~~v~~~~~~~g~---~~~i~~---------D~v~~~~G~~p~~~~l~~  456 (517)
T PRK15317        399 LPNVTIITNAQTTEVTGDGD------KVTGLTYKDRTTGE---EHHLEL---------EGVFVQIGLVPNTEWLKG  456 (517)
T ss_pred             CCCcEEEECcEEEEEEcCCC------cEEEEEEEECCCCc---EEEEEc---------CEEEEeECCccCchHHhh
Confidence            46899999999999986544      8899988763 355   567777         999999998776676644

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=96.31  E-value=0.0035  Score=68.73  Aligned_cols=36  Identities=17%  Similarity=0.264  Sum_probs=32.6

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSP   87 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~   87 (523)
                      ...+|+|||+|++|+++|..|++ |++|+|+|+.+..
T Consensus       192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~  228 (652)
T PRK12814        192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQA  228 (652)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            45689999999999999999999 9999999998744

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=96.30  E-value=0.025  Score=59.57  Aligned_cols=31  Identities=26%  Similarity=0.419  Sum_probs=26.0

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .++|||+|..|+-+|..|++ |.+|.|+|+++
T Consensus       174 ~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~  205 (466)
T PRK07818        174 SIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLD  205 (466)
T ss_pred             eEEEECCcHHHHHHHHHHHHcCCeEEEEecCC
Confidence            58888888888888888887 88888888765

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=96.26  E-value=0.0036  Score=60.63  Aligned_cols=37  Identities=30%  Similarity=0.292  Sum_probs=33.0

Q ss_pred             cccEEEECCCCchHHHHhhhhccCeeEEEecCCCCCC
Q 009873           53 SFDYIVVGGGTTGCPLAATLSDNFSVLLVERGGSPFG   89 (523)
Q Consensus        53 ~~DvIIVGsG~aG~~~A~~Laeg~~VlvlE~G~~~~~   89 (523)
                      .-++.|||||.+|+++|+.|+.-++|.|.|++...++
T Consensus         8 r~~IAVIGsGisGLSAA~~Ls~rhdVTLfEA~~rlGG   44 (447)
T COG2907           8 RRKIAVIGSGISGLSAAWLLSRRHDVTLFEADRRLGG   44 (447)
T ss_pred             CcceEEEcccchhhhhHHhhhcccceEEEeccccccC
Confidence            3479999999999999999999999999999985544

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=96.19  E-value=0.043  Score=56.47  Aligned_cols=31  Identities=32%  Similarity=0.535  Sum_probs=29.2

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .++|||+|..|+-+|..|++ |.+|.|+|+++
T Consensus       146 ~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~  177 (396)
T PRK09754        146 SVVIVGAGTIGLELAASATQRRCKVTVIELAA  177 (396)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence            59999999999999999998 99999999986

>PLN03000 amine oxidase

Probab=96.18  E-value=0.0042  Score=68.68  Aligned_cols=38  Identities=29%  Similarity=0.449  Sum_probs=33.9

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPFG   89 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~~   89 (523)
                      ...||+|||||++|+.+|+.|++ |++|+|+|+.....+
T Consensus       183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGG  221 (881)
T PLN03000        183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGG  221 (881)
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCC
Confidence            45799999999999999999998 999999999875543

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=96.12  E-value=0.04  Score=58.19  Aligned_cols=31  Identities=35%  Similarity=0.619  Sum_probs=28.8

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .++|||+|.+|+-+|..|++ |.+|.|+|+++
T Consensus       182 ~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~  213 (472)
T PRK05976        182 SLVIVGGGVIGLEWASMLADFGVEVTVVEAAD  213 (472)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCeEEEEEecC
Confidence            69999999999999999998 89999999986

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=96.12  E-value=0.0037  Score=69.79  Aligned_cols=32  Identities=28%  Similarity=0.456  Sum_probs=29.4

Q ss_pred             cEEEECCCCchHHHHhhhhc---cCeeEEEecCCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD---NFSVLLVERGGS   86 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae---g~~VlvlE~G~~   86 (523)
                      +|+|||||++|+++|+.|++   |++|+|+||...
T Consensus         2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~   36 (765)
T PRK08255          2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP   36 (765)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence            69999999999999999987   589999999874

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=96.10  E-value=0.0058  Score=61.84  Aligned_cols=35  Identities=20%  Similarity=0.368  Sum_probs=31.8

Q ss_pred             cccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCC
Q 009873           53 SFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSP   87 (523)
Q Consensus        53 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~   87 (523)
                      ..+|+|||+|++|+.+|..|++ |++|+|+|+.+..
T Consensus        18 ~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~   53 (352)
T PRK12770         18 GKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEP   53 (352)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            3589999999999999999998 8999999998754

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=96.08  E-value=0.03  Score=58.59  Aligned_cols=32  Identities=13%  Similarity=0.269  Sum_probs=29.1

Q ss_pred             ccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           54 FDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        54 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      -.++|||+|..|+-+|..|++ |.+|.++|+++
T Consensus       150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~  182 (444)
T PRK09564        150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLED  182 (444)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCc
Confidence            369999999999999999988 89999999875

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=96.08  E-value=0.0052  Score=64.60  Aligned_cols=36  Identities=22%  Similarity=0.334  Sum_probs=32.5

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSP   87 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~   87 (523)
                      ...+|+|||+|++|+++|..|++ |++|+|+|+.+..
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~  176 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEI  176 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence            45789999999999999999998 9999999998643

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=96.01  E-value=0.035  Score=58.59  Aligned_cols=31  Identities=23%  Similarity=0.327  Sum_probs=27.7

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .++|||+|..|+-+|..|++ |.+|.|+|+++
T Consensus       185 ~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~  216 (475)
T PRK06327        185 KLAVIGAGVIGLELGSVWRRLGAEVTILEALP  216 (475)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEeCCC
Confidence            58999999999999999888 89999999875

>PLN02976 amine oxidase

Probab=95.95  E-value=0.0061  Score=70.07  Aligned_cols=38  Identities=32%  Similarity=0.333  Sum_probs=33.5

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPF   88 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~   88 (523)
                      ...+||+|||+|++|+.+|+.|++ |++|+|||+....+
T Consensus       691 ~~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vG  729 (1713)
T PLN02976        691 VDRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIG  729 (1713)
T ss_pred             CCCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCC
Confidence            345899999999999999999999 89999999976443

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=95.94  E-value=0.024  Score=63.80  Aligned_cols=58  Identities=21%  Similarity=0.269  Sum_probs=42.1

Q ss_pred             CCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHhhCCC
Q 009873          231 PKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSGIG  309 (523)
Q Consensus       231 ~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~SGig  309 (523)
                      +.|+++++++.|++|..++.+     .+..|.+.  +|+     .+.+         +.||+|+|.--+..|+..+|+.
T Consensus       199 ~~GV~v~~~~~v~~I~~~~~~-----~~~~v~~~--dG~-----~i~~---------D~Vv~A~G~rPn~~L~~~~Gl~  256 (847)
T PRK14989        199 SMGVRVHTSKNTLEIVQEGVE-----ARKTMRFA--DGS-----ELEV---------DFIVFSTGIRPQDKLATQCGLA  256 (847)
T ss_pred             HCCCEEEcCCeEEEEEecCCC-----ceEEEEEC--CCC-----EEEc---------CEEEECCCcccCchHHhhcCcc
Confidence            567889999999999754432     45556553  465     3666         9999999988777777777763

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=95.92  E-value=0.0056  Score=68.18  Aligned_cols=34  Identities=21%  Similarity=0.330  Sum_probs=30.8

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      ....|+|||+|+||+++|+.|+. |++|+|+|+..
T Consensus       382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~  416 (1028)
T PRK06567        382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLK  416 (1028)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccc
Confidence            44579999999999999999998 99999999864

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=95.92  E-value=0.047  Score=57.45  Aligned_cols=31  Identities=29%  Similarity=0.483  Sum_probs=27.4

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .++|||+|..|+-+|..|++ |.+|.++|+++
T Consensus       174 ~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~  205 (462)
T PRK06416        174 SLVVIGGGYIGVEFASAYASLGAEVTIVEALP  205 (462)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC
Confidence            58999999999999998888 88999999875

>TIGR02053 MerA mercuric reductase

Probab=95.85  E-value=0.047  Score=57.44  Aligned_cols=32  Identities=28%  Similarity=0.513  Sum_probs=29.4

Q ss_pred             ccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           54 FDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        54 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      -.++|||+|..|+-+|..|++ |.+|.|+|+++
T Consensus       167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~  199 (463)
T TIGR02053       167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSD  199 (463)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC
Confidence            369999999999999999998 89999999985

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=95.85  E-value=0.0067  Score=64.10  Aligned_cols=34  Identities=29%  Similarity=0.405  Sum_probs=31.4

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      ...+|+|||+|++|+.+|..|++ |++|+|+|+.+
T Consensus       142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~  176 (485)
T TIGR01317       142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFERED  176 (485)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCC
Confidence            34699999999999999999999 99999999986

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=95.82  E-value=0.0077  Score=65.93  Aligned_cols=36  Identities=25%  Similarity=0.305  Sum_probs=32.6

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSP   87 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~   87 (523)
                      ...+|+|||||++|+++|..|++ |++|+|+|+.+..
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~  345 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEI  345 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCC
Confidence            35689999999999999999999 9999999998754

>PRK06370 mercuric reductase; Validated

Probab=95.81  E-value=0.06  Score=56.65  Aligned_cols=31  Identities=29%  Similarity=0.590  Sum_probs=28.4

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .++|||+|..|+-+|..|++ |.+|.|+|+++
T Consensus       173 ~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~  204 (463)
T PRK06370        173 HLVIIGGGYIGLEFAQMFRRFGSEVTVIERGP  204 (463)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC
Confidence            68999999999999999998 89999999886

>PTZ00188 adrenodoxin reductase; Provisional

Probab=95.78  E-value=0.011  Score=61.33  Aligned_cols=36  Identities=22%  Similarity=0.401  Sum_probs=31.2

Q ss_pred             ccEEEECCCCchHHHHhhhh-c-cCeeEEEecCCCCCC
Q 009873           54 FDYIVVGGGTTGCPLAATLS-D-NFSVLLVERGGSPFG   89 (523)
Q Consensus        54 ~DvIIVGsG~aG~~~A~~La-e-g~~VlvlE~G~~~~~   89 (523)
                      .-|.|||||++|+.+|.+|+ + |++|.|+||.+.+++
T Consensus        40 krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgG   77 (506)
T PTZ00188         40 FKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYG   77 (506)
T ss_pred             CEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCcc
Confidence            45999999999999999875 4 899999999986654

>PRK10262 thioredoxin reductase; Provisional

Probab=95.72  E-value=0.14  Score=51.01  Aligned_cols=31  Identities=35%  Similarity=0.460  Sum_probs=28.9

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .++|||+|..|+-+|..|++ +.+|.++++.+
T Consensus       148 ~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~  179 (321)
T PRK10262        148 KVAVIGGGNTAVEEALYLSNIASEVHLIHRRD  179 (321)
T ss_pred             EEEEECCCHHHHHHHHHHHhhCCEEEEEEECC
Confidence            69999999999999999999 89999999874

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=95.70  E-value=0.066  Score=56.05  Aligned_cols=31  Identities=29%  Similarity=0.326  Sum_probs=28.8

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .|+|||+|..|+-+|..|++ |.+|.|+++..
T Consensus       274 ~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~  305 (449)
T TIGR01316       274 SVVVIGGGNTAVDSARTALRLGAEVHCLYRRT  305 (449)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence            59999999999999999998 99999999874

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=95.70  E-value=0.031  Score=62.70  Aligned_cols=31  Identities=26%  Similarity=0.442  Sum_probs=29.1

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .++|||+|..|+-+|..|++ |.+|.|+|+++
T Consensus       142 ~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~  173 (785)
T TIGR02374       142 KAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAP  173 (785)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCeEEEEccCC
Confidence            58999999999999999999 99999999875

>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]

Probab=95.67  E-value=0.01  Score=59.20  Aligned_cols=36  Identities=28%  Similarity=0.365  Sum_probs=30.7

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-c--CeeEEEecCCCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-N--FSVLLVERGGSP   87 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g--~~VlvlE~G~~~   87 (523)
                      ..-+|+|||+|.+|+++|+.|+. +  ..|.|.|+++..
T Consensus        10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~Rv   48 (491)
T KOG1276|consen   10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRV   48 (491)
T ss_pred             ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcc
Confidence            35689999999999999999998 4  567889999744

>PRK14727 putative mercuric reductase; Provisional

Probab=95.66  E-value=0.065  Score=56.64  Aligned_cols=30  Identities=17%  Similarity=0.334  Sum_probs=25.0

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERG   84 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G   84 (523)
                      .++|||+|..|+-+|..|++ |.+|.|+++.
T Consensus       190 ~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~  220 (479)
T PRK14727        190 SLTVIGSSVVAAEIAQAYARLGSRVTILARS  220 (479)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCEEEEEEcC
Confidence            48888888888888888887 8888888864

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=95.64  E-value=0.0092  Score=64.44  Aligned_cols=35  Identities=29%  Similarity=0.399  Sum_probs=31.5

Q ss_pred             cccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCC
Q 009873           53 SFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSP   87 (523)
Q Consensus        53 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~   87 (523)
                      .-+|+|||+|++|+++|..|++ |++|+|+|+.+..
T Consensus       137 g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~  172 (564)
T PRK12771        137 GKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKL  172 (564)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            4579999999999999999998 9999999997644

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=95.63  E-value=0.091  Score=55.21  Aligned_cols=31  Identities=35%  Similarity=0.654  Sum_probs=28.3

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .++|||+|..|+-+|..|++ |.+|.|+|+++
T Consensus       172 ~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~  203 (458)
T PRK06912        172 SLLIVGGGVIGCEFASIYSRLGTKVTIVEMAP  203 (458)
T ss_pred             cEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence            69999999999999999988 89999999885

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=95.61  E-value=0.074  Score=56.10  Aligned_cols=31  Identities=26%  Similarity=0.359  Sum_probs=28.3

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .++|||+|..|+-+|..|++ |.+|.|||+++
T Consensus       176 ~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~  207 (471)
T PRK06467        176 RLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFD  207 (471)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Confidence            68999999999999999988 89999999886

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=95.51  E-value=0.21  Score=48.92  Aligned_cols=31  Identities=35%  Similarity=0.428  Sum_probs=28.7

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .|+|||+|..|+-+|..|++ +.+|.++++++
T Consensus       143 ~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~  174 (300)
T TIGR01292       143 EVAVVGGGDSAIEEALYLTRIAKKVTLVHRRD  174 (300)
T ss_pred             EEEEECCChHHHHHHHHHHhhcCEEEEEEeCc
Confidence            79999999999999999998 89999999874

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK12831 putative oxidoreductase; Provisional

Probab=95.50  E-value=0.1  Score=54.91  Aligned_cols=31  Identities=32%  Similarity=0.340  Sum_probs=28.4

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .|+|||+|..|+-+|..|+. |.+|.|+++..
T Consensus       283 ~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~  314 (464)
T PRK12831        283 KVAVVGGGNVAMDAARTALRLGAEVHIVYRRS  314 (464)
T ss_pred             eEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence            69999999999999999988 88899999764

>PRK13984 putative oxidoreductase; Provisional

Probab=95.43  E-value=0.014  Score=63.61  Aligned_cols=37  Identities=27%  Similarity=0.381  Sum_probs=33.2

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSP   87 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~   87 (523)
                      ....+|+|||+|++|+++|..|++ |++|+|+|+.+..
T Consensus       281 ~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~  318 (604)
T PRK13984        281 KKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKP  318 (604)
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            456789999999999999999999 9999999998744

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=95.41  E-value=0.091  Score=53.38  Aligned_cols=33  Identities=42%  Similarity=0.773  Sum_probs=28.1

Q ss_pred             cccEEEECCCCchHHHHhhhhc--c------------CeeEEEecCC
Q 009873           53 SFDYIVVGGGTTGCPLAATLSD--N------------FSVLLVERGG   85 (523)
Q Consensus        53 ~~DvIIVGsG~aG~~~A~~Lae--g------------~~VlvlE~G~   85 (523)
                      .-+++|||||++|-=+|.+|++  .            .+|.|+|+++
T Consensus       155 ~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p  201 (405)
T COG1252         155 LLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGP  201 (405)
T ss_pred             eeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCc
Confidence            3579999999999999999976  1            2899999987

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.40  E-value=0.27  Score=50.47  Aligned_cols=32  Identities=28%  Similarity=0.424  Sum_probs=28.0

Q ss_pred             ccEEEECCCCchHHHHhhhhcc----CeeEEEecCC
Q 009873           54 FDYIVVGGGTTGCPLAATLSDN----FSVLLVERGG   85 (523)
Q Consensus        54 ~DvIIVGsG~aG~~~A~~Laeg----~~VlvlE~G~   85 (523)
                      ++|.|||+|++|.++|.+|.+.    .+|.|+|+-.
T Consensus         2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~   37 (474)
T COG4529           2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRP   37 (474)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCCCCceEEecccc
Confidence            6899999999999999999871    3499999876

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=95.38  E-value=0.094  Score=55.18  Aligned_cols=31  Identities=26%  Similarity=0.565  Sum_probs=28.3

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .++|||+|..|+-+|..|++ |.+|.|+|+++
T Consensus       177 ~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~  208 (461)
T PRK05249        177 SLIIYGAGVIGCEYASIFAALGVKVTLINTRD  208 (461)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence            58999999999999999998 89999999875

>PRK07846 mycothione reductase; Reviewed

Probab=95.30  E-value=0.11  Score=54.41  Aligned_cols=32  Identities=31%  Similarity=0.536  Sum_probs=29.5

Q ss_pred             ccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           54 FDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        54 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      -.++|||+|..|+-+|..|++ |.+|.|+|+++
T Consensus       167 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~  199 (451)
T PRK07846        167 ESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSG  199 (451)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC
Confidence            369999999999999999999 99999999985

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=95.29  E-value=0.17  Score=52.61  Aligned_cols=30  Identities=37%  Similarity=0.665  Sum_probs=29.2

Q ss_pred             EEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           56 YIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        56 vIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      ++|||+|..|+-.|.-++. |.+|.|||+++
T Consensus       176 lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~  206 (454)
T COG1249         176 LVIVGGGYIGLEFASVFAALGSKVTVVERGD  206 (454)
T ss_pred             EEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Confidence            9999999999999999999 99999999997

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=95.25  E-value=0.12  Score=53.67  Aligned_cols=31  Identities=29%  Similarity=0.612  Sum_probs=28.9

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .|+|||+|..|+-+|..|++ |.+|.++++++
T Consensus       139 ~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~  170 (427)
T TIGR03385       139 NVVIIGGGYIGIEMAEALRERGKNVTLIHRSE  170 (427)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEECCc
Confidence            69999999999999999998 89999999875

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=95.22  E-value=0.08  Score=55.47  Aligned_cols=31  Identities=29%  Similarity=0.359  Sum_probs=28.7

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .++|||+|..|+-+|..|++ |.+|.|||+++
T Consensus       168 ~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~  199 (450)
T TIGR01421       168 RVVIVGAGYIAVELAGVLHGLGSETHLVIRHE  199 (450)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Confidence            59999999999999999998 99999999886

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=95.14  E-value=0.17  Score=53.34  Aligned_cols=31  Identities=26%  Similarity=0.380  Sum_probs=27.3

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .++|||+|..|+-+|..|++ |.+|.|+|+++
T Consensus       176 ~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~  207 (466)
T PRK06115        176 HLVVIGAGVIGLELGSVWRRLGAQVTVVEYLD  207 (466)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEeCCC
Confidence            58999999999999998888 89999999875

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=95.09  E-value=0.017  Score=60.44  Aligned_cols=58  Identities=21%  Similarity=0.259  Sum_probs=41.8

Q ss_pred             hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHhhC
Q 009873          228 AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSG  307 (523)
Q Consensus       228 ~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~SG  307 (523)
                      ..++.|++++++++|++|.. ++      ++..+..   ++.     ++.+         +.||+|+|...+..+|..+|
T Consensus       200 ~l~~~gI~v~~~~~v~~i~~-~~------~~~~v~~---~~~-----~i~~---------d~vi~a~G~~p~~~~l~~~g  255 (444)
T PRK09564        200 ELRENGVELHLNEFVKSLIG-ED------KVEGVVT---DKG-----EYEA---------DVVIVATGVKPNTEFLEDTG  255 (444)
T ss_pred             HHHHCCCEEEcCCEEEEEec-CC------cEEEEEe---CCC-----EEEc---------CEEEECcCCCcCHHHHHhcC
Confidence            55678999999999999953 22      4555543   233     2666         99999999876677787777


Q ss_pred             CC
Q 009873          308 IG  309 (523)
Q Consensus       308 ig  309 (523)
                      +.
T Consensus       256 l~  257 (444)
T PRK09564        256 LK  257 (444)
T ss_pred             cc
Confidence            63

>PRK06116 glutathione reductase; Validated

Probab=95.06  E-value=0.11  Score=54.43  Aligned_cols=31  Identities=29%  Similarity=0.380  Sum_probs=27.0

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .++|||+|..|+-+|..|++ |.+|.++++++
T Consensus       169 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~  200 (450)
T PRK06116        169 RVAVVGAGYIAVEFAGVLNGLGSETHLFVRGD  200 (450)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence            58899999999999988888 88999998875

>PLN02507 glutathione reductase

Probab=95.00  E-value=0.14  Score=54.48  Aligned_cols=31  Identities=26%  Similarity=0.315  Sum_probs=26.2

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .++|||+|..|+-+|..|++ |.+|.|+|+++
T Consensus       205 ~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~  236 (499)
T PLN02507        205 RAVVLGGGYIAVEFASIWRGMGATVDLFFRKE  236 (499)
T ss_pred             eEEEECCcHHHHHHHHHHHHcCCeEEEEEecC
Confidence            58888888888888888888 88888888775

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=94.93  E-value=0.019  Score=59.92  Aligned_cols=32  Identities=22%  Similarity=0.404  Sum_probs=29.0

Q ss_pred             cEEEECCCCchHHHHhhhhc---cCeeEEEecCCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD---NFSVLLVERGGS   86 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae---g~~VlvlE~G~~   86 (523)
                      .|||||+|++|+.+|.+|.+   +.+|+|+|+.+.
T Consensus         3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~   37 (438)
T PRK13512          3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRD   37 (438)
T ss_pred             eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCC
Confidence            59999999999999999986   489999999973

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=94.88  E-value=0.16  Score=53.54  Aligned_cols=31  Identities=35%  Similarity=0.575  Sum_probs=26.5

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .++|||+|..|+-+|..|++ |.+|.++|+++
T Consensus       179 ~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~  210 (466)
T PRK07845        179 HLIVVGSGVTGAEFASAYTELGVKVTLVSSRD  210 (466)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC
Confidence            58889999999888888888 88899998875

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=94.87  E-value=0.02  Score=58.99  Aligned_cols=33  Identities=27%  Similarity=0.331  Sum_probs=29.4

Q ss_pred             ccEEEECCCCchHHHHhhhhc-c--CeeEEEecCCC
Q 009873           54 FDYIVVGGGTTGCPLAATLSD-N--FSVLLVERGGS   86 (523)
Q Consensus        54 ~DvIIVGsG~aG~~~A~~Lae-g--~~VlvlE~G~~   86 (523)
                      -+|||||+|++|+.+|..|++ +  .+|+|+++...
T Consensus         4 ~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~   39 (396)
T PRK09754          4 KTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERH   39 (396)
T ss_pred             CcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCC
Confidence            479999999999999999998 5  58999999863

>PRK13748 putative mercuric reductase; Provisional

Probab=94.77  E-value=0.12  Score=55.76  Aligned_cols=30  Identities=20%  Similarity=0.339  Sum_probs=26.8

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERG   84 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G   84 (523)
                      .++|||+|..|+-+|..|++ |.+|.|||+.
T Consensus       272 ~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~  302 (561)
T PRK13748        272 RLAVIGSSVVALELAQAFARLGSKVTILARS  302 (561)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCEEEEEecC
Confidence            58999999999999999988 8999999875

>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]

Probab=94.77  E-value=0.031  Score=54.97  Aligned_cols=35  Identities=34%  Similarity=0.459  Sum_probs=30.8

Q ss_pred             cEEEECCCCchHHHHhhhhc---cCeeEEEecCCCCCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD---NFSVLLVERGGSPFG   89 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae---g~~VlvlE~G~~~~~   89 (523)
                      -|+|||||+||..+|..|.+   +.+|-|+|+-+-+++
T Consensus        22 ~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFG   59 (468)
T KOG1800|consen   22 RVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFG   59 (468)
T ss_pred             eEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccc
Confidence            59999999999999999876   599999999986543

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=94.75  E-value=0.14  Score=53.41  Aligned_cols=31  Identities=23%  Similarity=0.460  Sum_probs=24.9

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .++|||+|..|+-+|..|++ |.+|.|+|+++
T Consensus       160 ~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~  191 (441)
T PRK08010        160 HLGILGGGYIGVEFASMFANFGSKVTILEAAS  191 (441)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            57888888888888888877 78888888764

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=94.74  E-value=0.027  Score=58.53  Aligned_cols=37  Identities=16%  Similarity=0.300  Sum_probs=31.9

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSP   87 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~   87 (523)
                      ....+|||||+|.+|+.+|.+|.. +.+|+|||+.+..
T Consensus         8 ~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~   45 (424)
T PTZ00318          8 LKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHM   45 (424)
T ss_pred             CCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCc
Confidence            345689999999999999999977 6899999988743

>PRK14694 putative mercuric reductase; Provisional

Probab=94.61  E-value=0.14  Score=53.98  Aligned_cols=30  Identities=20%  Similarity=0.366  Sum_probs=23.7

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERG   84 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G   84 (523)
                      .++|||+|..|+-+|..|++ |.+|.|++++
T Consensus       180 ~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~  210 (468)
T PRK14694        180 RLLVIGASVVALELAQAFARLGSRVTVLARS  210 (468)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEECC
Confidence            57888888888888888877 7888888764

>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=94.49  E-value=0.027  Score=55.82  Aligned_cols=42  Identities=33%  Similarity=0.481  Sum_probs=37.0

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCCCCCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPFGNPL   92 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~~~~~   92 (523)
                      +++|||||+|.|..=|..+..|+- |.+||.++|.+..++...
T Consensus         2 deeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~sa   44 (440)
T KOG1439|consen    2 DEEYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGESA   44 (440)
T ss_pred             CCceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCcccc
Confidence            456999999999999999999998 999999999997766544

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=94.34  E-value=0.2  Score=52.36  Aligned_cols=31  Identities=26%  Similarity=0.496  Sum_probs=26.3

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .++|||+|..|+-+|..|++ |.+|.|+|+++
T Consensus       168 ~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~  199 (446)
T TIGR01424       168 SILILGGGYIAVEFAGIWRGLGVQVTLIYRGE  199 (446)
T ss_pred             eEEEECCcHHHHHHHHHHHHcCCeEEEEEeCC
Confidence            48888999999888888887 88899998875

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.25  E-value=0.051  Score=53.92  Aligned_cols=40  Identities=33%  Similarity=0.350  Sum_probs=36.0

Q ss_pred             cCCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCCC
Q 009873           50 AGKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPFG   89 (523)
Q Consensus        50 ~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~~   89 (523)
                      ...+|||||||.|..=+++|...+. |.+||=|++..+.++
T Consensus         5 lP~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg   45 (547)
T KOG4405|consen    5 LPEEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGG   45 (547)
T ss_pred             CchhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCC
Confidence            3568999999999999999999999 999999999986654

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=94.07  E-value=0.36  Score=48.76  Aligned_cols=31  Identities=29%  Similarity=0.253  Sum_probs=27.3

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCe-eEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFS-VLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~-VlvlE~G~   85 (523)
                      .++|||+|..|+-+|..|++ |.+ |.|+|+..
T Consensus       174 ~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~  206 (352)
T PRK12770        174 KVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT  206 (352)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence            59999999999999999887 875 99999764

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=93.95  E-value=0.25  Score=52.24  Aligned_cols=30  Identities=23%  Similarity=0.316  Sum_probs=24.9

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERG   84 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G   84 (523)
                      .++|||+|..|+-+|..|++ |.+|.|+++.
T Consensus       182 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~  212 (484)
T TIGR01438       182 KTLVVGASYVALECAGFLAGIGLDVTVMVRS  212 (484)
T ss_pred             CEEEECCCHHHHHHHHHHHHhCCcEEEEEec
Confidence            48888888888888888888 8888888863

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=93.73  E-value=0.058  Score=56.07  Aligned_cols=35  Identities=29%  Similarity=0.294  Sum_probs=31.9

Q ss_pred             ccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCC
Q 009873           54 FDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPF   88 (523)
Q Consensus        54 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~   88 (523)
                      -.|-|||||++|+.+|..|+. |++|++.|+-+...
T Consensus       124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~G  159 (457)
T COG0493         124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDG  159 (457)
T ss_pred             CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCc
Confidence            579999999999999999999 99999999987553

>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=93.65  E-value=0.075  Score=52.17  Aligned_cols=41  Identities=24%  Similarity=0.281  Sum_probs=36.0

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCCCCCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPFGNPL   92 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~~~~~   92 (523)
                      ..|||||+|.|..=|+.+.+|+- |.+||.|+|.+..++...
T Consensus         5 ~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~~a   46 (434)
T COG5044           5 TLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTSA   46 (434)
T ss_pred             ccccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCcccc
Confidence            37999999999999999999997 999999999987665433

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=93.64  E-value=0.38  Score=50.83  Aligned_cols=31  Identities=26%  Similarity=0.341  Sum_probs=24.8

Q ss_pred             cEEEECCCCchHHHHhhh---hc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATL---SD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~L---ae-g~~VlvlE~G~   85 (523)
                      .++|||+|..|+-+|..+   .+ |.+|.|+|+++
T Consensus       189 ~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~  223 (486)
T TIGR01423       189 RVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNN  223 (486)
T ss_pred             eEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCC
Confidence            488999999998888644   34 78999999875

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=93.61  E-value=0.33  Score=51.02  Aligned_cols=31  Identities=39%  Similarity=0.515  Sum_probs=27.9

Q ss_pred             cEEEECCCCchHHHHhhhhc-cC-eeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NF-SVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~-~VlvlE~G~   85 (523)
                      .|+|||+|..|+-+|..|++ |. +|.++++..
T Consensus       275 ~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~  307 (457)
T PRK11749        275 RVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG  307 (457)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence            69999999999999999988 76 899999864

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=93.60  E-value=0.056  Score=55.24  Aligned_cols=59  Identities=15%  Similarity=0.169  Sum_probs=42.6

Q ss_pred             hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHhhC
Q 009873          228 AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSG  307 (523)
Q Consensus       228 ~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~SG  307 (523)
                      ..++.|+++++++.|+++..+++      . ..|+..  +|+     ++.+         +.||+|+|.-.++.++..+|
T Consensus       192 ~l~~~gV~i~~~~~v~~i~~~~~------~-~~v~~~--~g~-----~i~~---------D~vI~a~G~~p~~~l~~~~g  248 (377)
T PRK04965        192 RLTEMGVHLLLKSQLQGLEKTDS------G-IRATLD--SGR-----SIEV---------DAVIAAAGLRPNTALARRAG  248 (377)
T ss_pred             HHHhCCCEEEECCeEEEEEccCC------E-EEEEEc--CCc-----EEEC---------CEEEECcCCCcchHHHHHCC
Confidence            55678999999999999976543      2 234432  454     4666         99999999876677777776


Q ss_pred             CC
Q 009873          308 IG  309 (523)
Q Consensus       308 ig  309 (523)
                      +.
T Consensus       249 l~  250 (377)
T PRK04965        249 LA  250 (377)
T ss_pred             CC
Confidence            63

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=93.56  E-value=0.059  Score=52.08  Aligned_cols=31  Identities=26%  Similarity=0.354  Sum_probs=29.0

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      -|.|||+|.+|+-+|+.+++ |.+|.|.|-.+
T Consensus         5 ~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp   36 (439)
T COG1206           5 PINVIGAGLAGSEAAWQIAKRGVPVILYEMRP   36 (439)
T ss_pred             ceEEEcccccccHHHHHHHHcCCcEEEEEccc
Confidence            38899999999999999999 99999999775

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=93.44  E-value=0.064  Score=54.46  Aligned_cols=33  Identities=18%  Similarity=0.368  Sum_probs=28.5

Q ss_pred             cEEEECCCCchHHHHhhhhc----cCeeEEEecCCCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD----NFSVLLVERGGSP   87 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae----g~~VlvlE~G~~~   87 (523)
                      .|||||+|++|+.+|.+|.+    +.+|+|+|+....
T Consensus         1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~   37 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTT   37 (364)
T ss_pred             CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCC
Confidence            38999999999999999953    5899999998743

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]

Probab=92.65  E-value=0.1  Score=50.22  Aligned_cols=39  Identities=38%  Similarity=0.484  Sum_probs=33.2

Q ss_pred             ccCCcccEEEECCCCchHHHHhhhhc--c-CeeEEEecCCCC
Q 009873           49 VAGKSFDYIVVGGGTTGCPLAATLSD--N-FSVLLVERGGSP   87 (523)
Q Consensus        49 ~~~~~~DvIIVGsG~aG~~~A~~Lae--g-~~VlvlE~G~~~   87 (523)
                      ...++|.|+|||+|.+|+.+|.++..  + -+|.+||-....
T Consensus        35 ~~~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~H   76 (446)
T KOG3851|consen   35 FARKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDH   76 (446)
T ss_pred             hcccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhc
Confidence            45678999999999999999999987  4 689999976543

>PTZ00052 thioredoxin reductase; Provisional

Probab=92.55  E-value=0.6  Score=49.63  Aligned_cols=30  Identities=27%  Similarity=0.441  Sum_probs=26.1

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERG   84 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G   84 (523)
                      .++|||+|..|+-+|..|++ |.+|.|+++.
T Consensus       184 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~  214 (499)
T PTZ00052        184 KTLIVGASYIGLETAGFLNELGFDVTVAVRS  214 (499)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCcEEEEEcC
Confidence            58999999999999999888 8899999863

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=92.49  E-value=1.4  Score=51.09  Aligned_cols=59  Identities=17%  Similarity=0.145  Sum_probs=44.2

Q ss_pred             CCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHhhCC
Q 009873          231 PKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSGI  308 (523)
Q Consensus       231 ~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~SGi  308 (523)
                      +.|+++++++.|+++.-+ +      ++.+|++...+|.   ..++.+         +.|+++.|-.-+..|+...|.
T Consensus       363 ~~GV~i~~~~~v~~i~g~-~------~v~~V~l~~~~g~---~~~i~~---------D~V~va~G~~Pnt~L~~~lg~  421 (985)
T TIGR01372       363 ELGIEVLTGHVVAATEGG-K------RVSGVAVARNGGA---GQRLEA---------DALAVSGGWTPVVHLFSQRGG  421 (985)
T ss_pred             HcCCEEEcCCeEEEEecC-C------cEEEEEEEecCCc---eEEEEC---------CEEEEcCCcCchhHHHHhcCC
Confidence            457889999999998632 2      6788887643344   556776         999999998888888776664

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=92.19  E-value=0.71  Score=51.77  Aligned_cols=31  Identities=35%  Similarity=0.387  Sum_probs=27.7

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCe-eEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFS-VLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~-VlvlE~G~   85 (523)
                      .|||||+|..|+-+|..|.. |.+ |.|+++..
T Consensus       572 ~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~  604 (752)
T PRK12778        572 KVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS  604 (752)
T ss_pred             cEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence            59999999999999999988 865 99999864

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=92.17  E-value=0.99  Score=45.31  Aligned_cols=36  Identities=22%  Similarity=0.253  Sum_probs=27.2

Q ss_pred             cCCcccEEEECCCCchHHHHhhhhc-c--CeeEEEecCC
Q 009873           50 AGKSFDYIVVGGGTTGCPLAATLSD-N--FSVLLVERGG   85 (523)
Q Consensus        50 ~~~~~DvIIVGsG~aG~~~A~~Lae-g--~~VlvlE~G~   85 (523)
                      ......|+|||||-+++-++..|.+ +  .+|.++=|+.
T Consensus       187 ~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~  225 (341)
T PF13434_consen  187 SLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSP  225 (341)
T ss_dssp             ----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSS
T ss_pred             ccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCC
Confidence            3455679999999999999999988 4  5899998886

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=91.66  E-value=0.15  Score=44.41  Aligned_cols=30  Identities=33%  Similarity=0.567  Sum_probs=28.0

Q ss_pred             EEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           56 YIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        56 vIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      +.|+|+|..|+..|.+|++ |.+|.++-|..
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~   31 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP   31 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence            6899999999999999998 89999999875

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=91.62  E-value=0.14  Score=52.56  Aligned_cols=35  Identities=29%  Similarity=0.364  Sum_probs=32.0

Q ss_pred             cccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCC
Q 009873           53 SFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSP   87 (523)
Q Consensus        53 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~   87 (523)
                      .-+++|||+|..|+.+|..|++ |++|.++|+.+..
T Consensus       136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~  171 (415)
T COG0446         136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRL  171 (415)
T ss_pred             cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEccccc
Confidence            3589999999999999999999 9999999999744

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=91.61  E-value=1.3  Score=46.71  Aligned_cols=31  Identities=29%  Similarity=0.296  Sum_probs=27.5

Q ss_pred             cEEEECCCCchHHHHhhhhc-c-CeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-N-FSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g-~~VlvlE~G~   85 (523)
                      .++|||+|..|+-+|..+.+ | .+|.|+++.+
T Consensus       284 ~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~  316 (467)
T TIGR01318       284 RVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRD  316 (467)
T ss_pred             EEEEECCcHHHHHHHHHHHHcCCCeEEEEEecC
Confidence            69999999999999999887 7 4799999875

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=91.58  E-value=0.97  Score=46.25  Aligned_cols=56  Identities=14%  Similarity=0.187  Sum_probs=43.9

Q ss_pred             CCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHh
Q 009873          229 GNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLL  305 (523)
Q Consensus       229 ~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~  305 (523)
                      .++.|++++.++.+..+..+.+|     +++.|...+  |+     ++.+         +.||+..|+--...++..
T Consensus       265 ~e~kgVk~~~~t~~s~l~~~~~G-----ev~~V~l~d--g~-----~l~a---------dlvv~GiG~~p~t~~~~~  320 (478)
T KOG1336|consen  265 YENKGVKFYLGTVVSSLEGNSDG-----EVSEVKLKD--GK-----TLEA---------DLVVVGIGIKPNTSFLEK  320 (478)
T ss_pred             HHhcCeEEEEecceeecccCCCC-----cEEEEEecc--CC-----Eecc---------CeEEEeeccccccccccc
Confidence            34678999999999999988765     888888776  55     4766         999999998655555554

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=91.57  E-value=0.18  Score=51.33  Aligned_cols=34  Identities=26%  Similarity=0.456  Sum_probs=30.0

Q ss_pred             cEEEECCCCchHHHHhhhhc-c--CeeEEEecCCCCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-N--FSVLLVERGGSPF   88 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g--~~VlvlE~G~~~~   88 (523)
                      -+||||||.+|+.+|.+|.. .  .+|+|||+.....
T Consensus         5 ~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl   41 (405)
T COG1252           5 RIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHL   41 (405)
T ss_pred             eEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccc
Confidence            38999999999999999998 3  8899999998543

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=91.28  E-value=0.18  Score=47.42  Aligned_cols=31  Identities=32%  Similarity=0.655  Sum_probs=29.3

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .++|||+|-.|..+|..|++ |..|+++|+-.
T Consensus         2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~   33 (225)
T COG0569           2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDE   33 (225)
T ss_pred             EEEEECCcHHHHHHHHHHHhCCCceEEEEcCH
Confidence            48999999999999999999 89999999986

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=91.11  E-value=2.3  Score=48.76  Aligned_cols=31  Identities=32%  Similarity=0.397  Sum_probs=28.1

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .|||||+|..|+=+|..+.. |.+|.++++..
T Consensus       449 ~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~  480 (944)
T PRK12779        449 EVFVIGGGNTAMDAARTAKRLGGNVTIVYRRT  480 (944)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCEEEEEEecC
Confidence            59999999999999999988 88999998764

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=90.42  E-value=1.9  Score=47.64  Aligned_cols=31  Identities=26%  Similarity=0.300  Sum_probs=26.5

Q ss_pred             cEEEECCCCchHHHHhhhhc-c-CeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-N-FSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g-~~VlvlE~G~   85 (523)
                      .|+|||+|..|+-+|..+.+ | .+|.++++..
T Consensus       470 ~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~  502 (654)
T PRK12769        470 NVVVLGGGDTAMDCVRTALRHGASNVTCAYRRD  502 (654)
T ss_pred             eEEEECCcHHHHHHHHHHHHcCCCeEEEeEecC
Confidence            59999999999999988776 7 4799998864

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=89.93  E-value=0.26  Score=45.07  Aligned_cols=33  Identities=18%  Similarity=0.244  Sum_probs=29.6

Q ss_pred             cccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           53 SFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        53 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .-.|+|||||+++-.+|+.+++ .+|-+|+|-+.
T Consensus         8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~   41 (322)
T KOG0404|consen    8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMM   41 (322)
T ss_pred             eeeEEEEccCchHHHHHHHHhhcccCceEEeeee
Confidence            3469999999999999999999 79999999764

>KOG2755 consensus Oxidoreductase [General function prediction only]

Probab=89.81  E-value=0.24  Score=46.44  Aligned_cols=30  Identities=37%  Similarity=0.697  Sum_probs=27.5

Q ss_pred             EEEECCCCchHHHHhhhhc---cCeeEEEecCC
Q 009873           56 YIVVGGGTTGCPLAATLSD---NFSVLLVERGG   85 (523)
Q Consensus        56 vIIVGsG~aG~~~A~~Lae---g~~VlvlE~G~   85 (523)
                      +||||+|++|-++|-.|+.   ..+||+|-+.+
T Consensus         2 fivvgggiagvscaeqla~~~psa~illitass   34 (334)
T KOG2755|consen    2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASS   34 (334)
T ss_pred             eEEEcCccccccHHHHHHhhCCCCcEEEEeccH
Confidence            7999999999999999987   58999998876

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=89.74  E-value=0.74  Score=51.95  Aligned_cols=35  Identities=14%  Similarity=0.058  Sum_probs=29.0

Q ss_pred             hhhCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEe
Q 009873          226 LEAGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIK  265 (523)
Q Consensus       226 l~~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~  265 (523)
                      +..|.+.|+++.+++.-.+|+.++++     ++++|++..
T Consensus       647 v~~A~eEGV~f~~~~~P~~i~~d~~g-----~v~~l~~~~  681 (1028)
T PRK06567        647 LIYALALGVDFKENMQPLRINVDKYG-----HVESVEFEN  681 (1028)
T ss_pred             HHHHHHcCcEEEecCCcEEEEecCCC-----eEEEEEEEE
Confidence            33567899999999999999987654     899998863

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=89.36  E-value=2.5  Score=46.53  Aligned_cols=31  Identities=32%  Similarity=0.381  Sum_probs=27.3

Q ss_pred             cEEEECCCCchHHHHhhhhc-c-CeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-N-FSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g-~~VlvlE~G~   85 (523)
                      .|||||+|..|+-+|..|.+ | .+|.|+++..
T Consensus       325 ~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~  357 (652)
T PRK12814        325 KVVVIGGGNTAIDAARTALRLGAESVTILYRRT  357 (652)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence            59999999999999999887 7 4799999874

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=89.07  E-value=0.28  Score=43.20  Aligned_cols=30  Identities=40%  Similarity=0.519  Sum_probs=27.6

Q ss_pred             EEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           56 YIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        56 vIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      |.|+|||..|.++|..|++ |.+|.|..+..
T Consensus         2 I~ViGaG~~G~AlA~~la~~g~~V~l~~~~~   32 (157)
T PF01210_consen    2 IAVIGAGNWGTALAALLADNGHEVTLWGRDE   32 (157)
T ss_dssp             EEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred             EEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence            7899999999999999999 89999998864

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=88.88  E-value=0.35  Score=47.81  Aligned_cols=31  Identities=26%  Similarity=0.474  Sum_probs=29.0

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .|.|||+|+.|+..|..|++ |.+|.++.|+.
T Consensus         4 ~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~   35 (305)
T PRK05708          4 TWHILGAGSLGSLWACRLARAGLPVRLILRDR   35 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence            58999999999999999999 89999999974

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=88.79  E-value=0.34  Score=43.80  Aligned_cols=30  Identities=33%  Similarity=0.545  Sum_probs=25.9

Q ss_pred             EEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           56 YIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        56 vIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      |.|||+|..|...|..++. |++|.++|..+
T Consensus         2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~   32 (180)
T PF02737_consen    2 VAVIGAGTMGRGIAALFARAGYEVTLYDRSP   32 (180)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred             EEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence            7899999999999999988 99999999874

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=88.63  E-value=0.46  Score=53.21  Aligned_cols=37  Identities=22%  Similarity=0.302  Sum_probs=32.5

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPF   88 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~   88 (523)
                      .-.-|-|||||++|+.+|..|-+ |+-|+|-||.+...
T Consensus      1784 tg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~g 1821 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVG 1821 (2142)
T ss_pred             cCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcC
Confidence            34569999999999999999999 99999999987543

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=88.63  E-value=0.36  Score=50.41  Aligned_cols=31  Identities=19%  Similarity=0.400  Sum_probs=29.3

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .++|||+|..|+-+|..|++ |.+|.|+|+++
T Consensus       159 ~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~  190 (438)
T PRK07251        159 RLGIIGGGNIGLEFAGLYNKLGSKVTVLDAAS  190 (438)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence            59999999999999999998 99999999986

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=88.43  E-value=0.46  Score=43.10  Aligned_cols=30  Identities=37%  Similarity=0.524  Sum_probs=24.5

Q ss_pred             EEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           56 YIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        56 vIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      |.|||.|..|+++|..||+ |++|+.+|...
T Consensus         3 I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~   33 (185)
T PF03721_consen    3 IAVIGLGYVGLPLAAALAEKGHQVIGVDIDE   33 (185)
T ss_dssp             EEEE--STTHHHHHHHHHHTTSEEEEE-S-H
T ss_pred             EEEECCCcchHHHHHHHHhCCCEEEEEeCCh
Confidence            7899999999999999999 99999999875

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=88.08  E-value=0.37  Score=54.21  Aligned_cols=59  Identities=29%  Similarity=0.380  Sum_probs=44.0

Q ss_pred             hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHhhC
Q 009873          228 AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSG  307 (523)
Q Consensus       228 ~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~SG  307 (523)
                      ..++.|+++++++.|++|.-+ +      ++.+|++.  +|+     ++.+         +.||+|+|.--++.|+..+|
T Consensus       191 ~l~~~GV~v~~~~~v~~i~~~-~------~~~~v~~~--dG~-----~i~~---------D~Vi~a~G~~Pn~~la~~~g  247 (785)
T TIGR02374       191 ELEQKGLTFLLEKDTVEIVGA-T------KADRIRFK--DGS-----SLEA---------DLIVMAAGIRPNDELAVSAG  247 (785)
T ss_pred             HHHHcCCEEEeCCceEEEEcC-C------ceEEEEEC--CCC-----EEEc---------CEEEECCCCCcCcHHHHhcC
Confidence            456789999999999998643 2      56777764  365     3666         99999999876677766676


Q ss_pred             CC
Q 009873          308 IG  309 (523)
Q Consensus       308 ig  309 (523)
                      +.
T Consensus       248 l~  249 (785)
T TIGR02374       248 IK  249 (785)
T ss_pred             Cc
Confidence            53

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=87.95  E-value=0.45  Score=43.58  Aligned_cols=32  Identities=38%  Similarity=0.503  Sum_probs=27.0

Q ss_pred             ccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           54 FDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        54 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      -.|+|||+|.++.-+|..|++ +.+|.++=|.+
T Consensus       168 k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~  200 (203)
T PF13738_consen  168 KRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSP  200 (203)
T ss_dssp             SEEEEE--SHHHHHHHHHHTTTCSEEEEEESS-
T ss_pred             CcEEEEcChHHHHHHHHHHHhhCCEEEEEecCC
Confidence            459999999999999999999 89999998876

...

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=87.26  E-value=0.54  Score=46.66  Aligned_cols=31  Identities=26%  Similarity=0.392  Sum_probs=28.9

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .+.|||+|..|+..|..|++ |++|.++.|+.
T Consensus         7 ~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~   38 (313)
T PRK06249          7 RIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD   38 (313)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence            49999999999999999999 89999999874

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=87.22  E-value=0.78  Score=46.03  Aligned_cols=36  Identities=31%  Similarity=0.424  Sum_probs=32.8

Q ss_pred             cCCcccEEEECCCCchHHHHhhhhc--cCeeEEEecCC
Q 009873           50 AGKSFDYIVVGGGTTGCPLAATLSD--NFSVLLVERGG   85 (523)
Q Consensus        50 ~~~~~DvIIVGsG~aG~~~A~~Lae--g~~VlvlE~G~   85 (523)
                      +.+.+|+|.||-|+.-+.+|..|.+  +.+++.|||-+
T Consensus         2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp   39 (436)
T COG3486           2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKP   39 (436)
T ss_pred             CCcceeeEEEccCchHHHHHHHhccccCcceEEEecCC
Confidence            4567999999999999999999999  58999999987

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=87.03  E-value=0.52  Score=49.85  Aligned_cols=31  Identities=29%  Similarity=0.453  Sum_probs=28.6

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .|+|||+|.+|+.+|..|++ |.+|.++|+.+
T Consensus        18 ~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~   49 (480)
T PRK01438         18 RVVVAGLGVSGFAAADALLELGARVTVVDDGD   49 (480)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            59999999999999999988 99999999765

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=86.10  E-value=0.59  Score=49.09  Aligned_cols=31  Identities=29%  Similarity=0.446  Sum_probs=28.6

Q ss_pred             EEEECCCCchHHHHhhhhc-cCeeEEEecCCC
Q 009873           56 YIVVGGGTTGCPLAATLSD-NFSVLLVERGGS   86 (523)
Q Consensus        56 vIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~   86 (523)
                      |.|||.|.+|+++|+.|++ |++|.+.|+...
T Consensus         3 v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~   34 (459)
T PRK02705          3 AHVIGLGRSGIAAARLLKAQGWEVVVSDRNDS   34 (459)
T ss_pred             EEEEccCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence            7999999999999999998 999999998763

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=86.10  E-value=0.6  Score=48.74  Aligned_cols=31  Identities=23%  Similarity=0.380  Sum_probs=29.2

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .++|||+|..|+-+|..|++ |.+|.|+|+++
T Consensus       150 ~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~  181 (438)
T PRK13512        150 KALVVGAGYISLEVLENLYERGLHPTLIHRSD  181 (438)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEeccc
Confidence            69999999999999999998 99999999986

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=86.08  E-value=0.57  Score=46.37  Aligned_cols=31  Identities=19%  Similarity=0.310  Sum_probs=28.8

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .|.|||+|..|+..|..|++ |++|.++++..
T Consensus         4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~   35 (308)
T PRK06129          4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADP   35 (308)
T ss_pred             EEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence            48999999999999999998 89999999875

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=86.05  E-value=0.66  Score=52.46  Aligned_cols=33  Identities=21%  Similarity=0.380  Sum_probs=28.9

Q ss_pred             cEEEECCCCchHHHHhhhhc-----cCeeEEEecCCCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-----NFSVLLVERGGSP   87 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-----g~~VlvlE~G~~~   87 (523)
                      .|||||+|++|+.+|.+|.+     +.+|+|+++.+..
T Consensus         5 kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~   42 (847)
T PRK14989          5 RLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRI   42 (847)
T ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCC
Confidence            69999999999999999864     3799999998754

>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]

Probab=85.54  E-value=0.75  Score=44.11  Aligned_cols=33  Identities=18%  Similarity=0.213  Sum_probs=26.5

Q ss_pred             cccEEEECCCCchHHHHhhhhc-c-------CeeEEEecCC
Q 009873           53 SFDYIVVGGGTTGCPLAATLSD-N-------FSVLLVERGG   85 (523)
Q Consensus        53 ~~DvIIVGsG~aG~~~A~~Lae-g-------~~VlvlE~G~   85 (523)
                      ..+++|||+|..|+++|..+.+ .       .+|.|++--.
T Consensus         3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf   43 (342)
T KOG3923|consen    3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRF   43 (342)
T ss_pred             CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCC
Confidence            4589999999999999977765 2       6788887554

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=85.42  E-value=0.69  Score=45.60  Aligned_cols=28  Identities=29%  Similarity=0.455  Sum_probs=26.9

Q ss_pred             EEEECCCCchHHHHhhhhc-cCeeEEEec
Q 009873           56 YIVVGGGTTGCPLAATLSD-NFSVLLVER   83 (523)
Q Consensus        56 vIIVGsG~aG~~~A~~Lae-g~~VlvlE~   83 (523)
                      +.|||+|..|+..|..|++ |.+|.++.+
T Consensus         3 I~IiG~G~iG~~~a~~L~~~g~~V~~~~r   31 (305)
T PRK12921          3 IAVVGAGAVGGTFGGRLLEAGRDVTFLVR   31 (305)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence            7899999999999999999 899999998

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=85.36  E-value=0.59  Score=48.05  Aligned_cols=27  Identities=22%  Similarity=0.282  Sum_probs=23.6

Q ss_pred             CchHHHHhhhhc-cCeeEEEecCCCCCC
Q 009873           63 TTGCPLAATLSD-NFSVLLVERGGSPFG   89 (523)
Q Consensus        63 ~aG~~~A~~Lae-g~~VlvlE~G~~~~~   89 (523)
                      .+|++||++|++ |.+|+|+|+.+..++
T Consensus         1 iaGL~aA~~L~~~G~~v~vlEa~~r~GG   28 (450)
T PF01593_consen    1 IAGLAAAYYLAKAGYDVTVLEASDRVGG   28 (450)
T ss_dssp             HHHHHHHHHHHHTTTEEEEEESSSSSBT
T ss_pred             ChHHHHHHHHHhCCCCEEEEEcCCCCCc
Confidence            379999999999 999999999985544

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=85.30  E-value=0.73  Score=45.33  Aligned_cols=29  Identities=31%  Similarity=0.517  Sum_probs=27.3

Q ss_pred             EEEECCCCchHHHHhhhhc-cCeeEEEecC
Q 009873           56 YIVVGGGTTGCPLAATLSD-NFSVLLVERG   84 (523)
Q Consensus        56 vIIVGsG~aG~~~A~~Lae-g~~VlvlE~G   84 (523)
                      +.|||+|..|+..|..|++ |.+|.++.+.
T Consensus         3 I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~   32 (304)
T PRK06522          3 IAILGAGAIGGLFGAALAQAGHDVTLVARR   32 (304)
T ss_pred             EEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence            7899999999999999999 8999999984

>TIGR02731 phytoene_desat phytoene desaturase

Probab=85.24  E-value=1.8  Score=45.38  Aligned_cols=55  Identities=13%  Similarity=0.138  Sum_probs=39.9

Q ss_pred             hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCch
Q 009873          228 AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALG  298 (523)
Q Consensus       228 ~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~  298 (523)
                      .+++.|.+|++++.|++|..++++     +++||++.+..+++  .+++.+         +.||+|+..-.
T Consensus       222 ~l~~~g~~i~l~~~V~~I~~~~~~-----~v~~v~~~~~~~~~--~~~~~a---------~~VI~a~p~~~  276 (453)
T TIGR02731       222 YITSRGGEVRLNSRLKEIVLNEDG-----SVKHFVLADGEGQR--RFEVTA---------DAYVSAMPVDI  276 (453)
T ss_pred             HHHhcCCEEeCCCeeEEEEECCCC-----CEEEEEEecCCCCc--eeEEEC---------CEEEEcCCHHH
Confidence            444578999999999999876653     78999986533330  235665         99999997633

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>TIGR03452 mycothione_red mycothione reductase

Probab=85.06  E-value=0.73  Score=48.32  Aligned_cols=31  Identities=29%  Similarity=0.502  Sum_probs=29.3

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .++|||+|..|+-+|..|++ |.+|.|+|+++
T Consensus       171 ~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~  202 (452)
T TIGR03452       171 SLVIVGGGYIAAEFAHVFSALGTRVTIVNRST  202 (452)
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEEccC
Confidence            69999999999999999998 99999999986

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=84.96  E-value=0.74  Score=48.37  Aligned_cols=31  Identities=39%  Similarity=0.650  Sum_probs=29.3

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .++|||+|..|+-+|..|++ |.+|.++|+++
T Consensus       171 ~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~  202 (460)
T PRK06292        171 SLAVIGGGVIGLELGQALSRLGVKVTVFERGD  202 (460)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Confidence            69999999999999999998 99999999986

>PRK04148 hypothetical protein; Provisional

Probab=84.82  E-value=0.9  Score=38.59  Aligned_cols=30  Identities=20%  Similarity=0.373  Sum_probs=27.2

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      -+++||.| .|..+|..|++ |.+|+.+|..+
T Consensus        19 kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~   49 (134)
T PRK04148         19 KIVELGIG-FYFKVAKKLKESGFDVIVIDINE   49 (134)
T ss_pred             EEEEEEec-CCHHHHHHHHHCCCEEEEEECCH
Confidence            49999999 88888999999 99999999876

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=84.77  E-value=7.9  Score=38.79  Aligned_cols=56  Identities=18%  Similarity=0.314  Sum_probs=39.8

Q ss_pred             CCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEec-CCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHhhCCC
Q 009873          231 PKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKS-DGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSGIG  309 (523)
Q Consensus       231 ~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~-~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~SGig  309 (523)
                      ++|++++++++|.....++++      .+-|++.+. .++   ..++.+         +.+.+|.|=  .|   +..|+|
T Consensus       264 kQgikF~l~tkv~~a~~~~dg------~v~i~ve~ak~~k---~~tle~---------DvlLVsiGR--rP---~t~GLg  320 (506)
T KOG1335|consen  264 KQGIKFKLGTKVTSATRNGDG------PVEIEVENAKTGK---KETLEC---------DVLLVSIGR--RP---FTEGLG  320 (506)
T ss_pred             hcCceeEeccEEEEeeccCCC------ceEEEEEecCCCc---eeEEEe---------eEEEEEccC--cc---cccCCC
Confidence            466778999999999988874      334555553 356   677887         999999993  34   235665

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=84.37  E-value=0.86  Score=38.97  Aligned_cols=32  Identities=25%  Similarity=0.393  Sum_probs=27.7

Q ss_pred             ccEEEECCCCchHHHHhhhhc-cC-eeEEEecCC
Q 009873           54 FDYIVVGGGTTGCPLAATLSD-NF-SVLLVERGG   85 (523)
Q Consensus        54 ~DvIIVGsG~aG~~~A~~Lae-g~-~VlvlE~G~   85 (523)
                      --++|||+|.+|-.+|..|++ |. +|.|+-|-.
T Consensus        13 ~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~   46 (135)
T PF01488_consen   13 KRVLVIGAGGAARAVAAALAALGAKEITIVNRTP   46 (135)
T ss_dssp             SEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred             CEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence            359999999999999999998 85 599998753

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=84.34  E-value=0.92  Score=37.37  Aligned_cols=30  Identities=23%  Similarity=0.561  Sum_probs=26.7

Q ss_pred             EEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           56 YIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        56 vIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      |||||.|..|..+|..|.+ +.+|+++|+.+
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~   31 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDP   31 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSH
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCc
Confidence            7999999999999999999 56999999985

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=84.32  E-value=0.99  Score=38.51  Aligned_cols=32  Identities=22%  Similarity=0.363  Sum_probs=28.4

Q ss_pred             ccEEEECCCCchHHHHhhhhc-c-CeeEEEecCC
Q 009873           54 FDYIVVGGGTTGCPLAATLSD-N-FSVLLVERGG   85 (523)
Q Consensus        54 ~DvIIVGsG~aG~~~A~~Lae-g-~~VlvlE~G~   85 (523)
                      .-|+|||+|..|+.+|..|+. | .++.|+|...
T Consensus         3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~   36 (135)
T PF00899_consen    3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI   36 (135)
T ss_dssp             -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred             CEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence            348999999999999999999 8 5899999875

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=83.99  E-value=0.88  Score=47.66  Aligned_cols=31  Identities=32%  Similarity=0.513  Sum_probs=28.8

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .|+|||+|..|+.+|..|++ |++|.++|+..
T Consensus         7 ~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~   38 (450)
T PRK14106          7 KVLVVGAGVSGLALAKFLKKLGAKVILTDEKE   38 (450)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            48999999999999999999 99999999864

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=83.98  E-value=0.75  Score=37.25  Aligned_cols=31  Identities=26%  Similarity=0.341  Sum_probs=27.7

Q ss_pred             ccEEEECCCCchHHHHhhhhc-cCeeEEEecC
Q 009873           54 FDYIVVGGGTTGCPLAATLSD-NFSVLLVERG   84 (523)
Q Consensus        54 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G   84 (523)
                      --|+|||+|..|..-+..|.+ |.+|.|+-..
T Consensus         8 ~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~   39 (103)
T PF13241_consen    8 KRVLVVGGGPVAARKARLLLEAGAKVTVISPE   39 (103)
T ss_dssp             -EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence            459999999999999999999 9999999876

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=83.94  E-value=0.92  Score=49.69  Aligned_cols=31  Identities=19%  Similarity=0.166  Sum_probs=29.3

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .++|||+|..|+-+|..|++ |.+|.|||+++
T Consensus       314 ~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~  345 (659)
T PTZ00153        314 YMGIVGMGIIGLEFMDIYTALGSEVVSFEYSP  345 (659)
T ss_pred             ceEEECCCHHHHHHHHHHHhCCCeEEEEeccC
Confidence            69999999999999999998 99999999986

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=83.60  E-value=0.98  Score=41.61  Aligned_cols=30  Identities=23%  Similarity=0.403  Sum_probs=27.2

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERG   84 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G   84 (523)
                      -++|||+|-.|...|..|.+ |.+|.|+++.
T Consensus        12 ~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~   42 (202)
T PRK06718         12 RVVIVGGGKVAGRRAITLLKYGAHIVVISPE   42 (202)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence            59999999999999999988 8999999753

>PTZ00058 glutathione reductase; Provisional

Probab=83.50  E-value=0.94  Score=48.73  Aligned_cols=31  Identities=16%  Similarity=0.281  Sum_probs=29.3

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .++|||+|..|+-+|..|++ |.+|.++|+++
T Consensus       239 ~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~  270 (561)
T PTZ00058        239 RIGIAGSGYIAVELINVVNRLGAESYIFARGN  270 (561)
T ss_pred             EEEEECCcHHHHHHHHHHHHcCCcEEEEEecc
Confidence            59999999999999999998 99999999986

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=83.46  E-value=0.96  Score=48.77  Aligned_cols=31  Identities=29%  Similarity=0.398  Sum_probs=29.2

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .++|||+|..|+-+|..|++ |.+|.++++++
T Consensus       145 ~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~  176 (555)
T TIGR03143       145 DVFVIGGGFAAAEEAVFLTRYASKVTVIVREP  176 (555)
T ss_pred             EEEEECCCHHHHHHHHHHHccCCEEEEEEeCC
Confidence            59999999999999999998 89999999986

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=83.24  E-value=1  Score=44.10  Aligned_cols=31  Identities=23%  Similarity=0.363  Sum_probs=28.3

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      -|.|||+|..|..+|..|++ |.+|.++++..
T Consensus         5 kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~   36 (287)
T PRK08293          5 NVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD   36 (287)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence            38999999999999999998 89999999764

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=83.21  E-value=1.1  Score=39.49  Aligned_cols=28  Identities=29%  Similarity=0.425  Sum_probs=25.7

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEe
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVE   82 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE   82 (523)
                      -++|||+|-.|.--|..|.+ |++|.||.
T Consensus        15 ~vlVvGGG~va~rka~~Ll~~ga~V~VIs   43 (157)
T PRK06719         15 VVVIIGGGKIAYRKASGLKDTGAFVTVVS   43 (157)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence            49999999999999999988 99999994

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=83.04  E-value=0.97  Score=44.23  Aligned_cols=30  Identities=30%  Similarity=0.455  Sum_probs=28.1

Q ss_pred             EEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           56 YIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        56 vIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      |.|||+|..|...|..|++ |++|+++++.+
T Consensus         4 V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~   34 (288)
T PRK09260          4 LVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ   34 (288)
T ss_pred             EEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence            8899999999999999998 89999999875

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=82.55  E-value=1.2  Score=44.24  Aligned_cols=30  Identities=17%  Similarity=0.319  Sum_probs=28.0

Q ss_pred             EEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           56 YIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        56 vIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      |.|||+|..|...|..++. |++|.+.|..+
T Consensus        10 VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~   40 (321)
T PRK07066         10 FAAIGSGVIGSGWVARALAHGLDVVAWDPAP   40 (321)
T ss_pred             EEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            8899999999999999988 99999999864

>PLN02546 glutathione reductase

Probab=82.40  E-value=1.1  Score=48.19  Aligned_cols=31  Identities=23%  Similarity=0.328  Sum_probs=29.2

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .++|||+|..|+-+|..|++ +.+|.|+|+++
T Consensus       254 ~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~  285 (558)
T PLN02546        254 KIAIVGGGYIALEFAGIFNGLKSDVHVFIRQK  285 (558)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCeEEEEEecc
Confidence            69999999999999999998 89999999986

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=82.21  E-value=1.1  Score=44.87  Aligned_cols=30  Identities=33%  Similarity=0.606  Sum_probs=27.9

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERG   84 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G   84 (523)
                      .|.|||+|..|+..|..|++ |++|.++++.
T Consensus         4 kI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~   34 (341)
T PRK08229          4 RICVLGAGSIGCYLGGRLAAAGADVTLIGRA   34 (341)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence            38999999999999999999 8999999985

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=81.96  E-value=1.3  Score=42.66  Aligned_cols=33  Identities=24%  Similarity=0.263  Sum_probs=29.5

Q ss_pred             cccEEEECCCCchHHHHhhhhc-c-CeeEEEecCC
Q 009873           53 SFDYIVVGGGTTGCPLAATLSD-N-FSVLLVERGG   85 (523)
Q Consensus        53 ~~DvIIVGsG~aG~~~A~~Lae-g-~~VlvlE~G~   85 (523)
                      ..-|+|||.|..|+.+|..|+. | .++.|+|...
T Consensus        30 ~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~   64 (268)
T PRK15116         30 DAHICVVGIGGVGSWAAEALARTGIGAITLIDMDD   64 (268)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence            4569999999999999999999 8 7999999764

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=81.95  E-value=1.3  Score=43.38  Aligned_cols=31  Identities=29%  Similarity=0.386  Sum_probs=28.6

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      -|-|||+|..|...|..++. |++|+++|+.+
T Consensus         7 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~   38 (286)
T PRK07819          7 RVGVVGAGQMGAGIAEVCARAGVDVLVFETTE   38 (286)
T ss_pred             EEEEEcccHHHHHHHHHHHhCCCEEEEEECCH
Confidence            38899999999999999998 99999999875

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=81.80  E-value=1.3  Score=44.39  Aligned_cols=31  Identities=26%  Similarity=0.381  Sum_probs=28.6

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .+.|||+|..|++.|.-||+ |+.|+.+|.-.
T Consensus         2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~   33 (414)
T COG1004           2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDE   33 (414)
T ss_pred             ceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence            36899999999999999999 99999999875

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=81.40  E-value=1.3  Score=40.85  Aligned_cols=30  Identities=23%  Similarity=0.327  Sum_probs=27.4

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERG   84 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G   84 (523)
                      -|+|||+|..|..-|..|.+ |.+|.|+...
T Consensus        11 ~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~   41 (205)
T TIGR01470        11 AVLVVGGGDVALRKARLLLKAGAQLRVIAEE   41 (205)
T ss_pred             eEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            59999999999999999998 9999999754

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=81.17  E-value=1.4  Score=40.51  Aligned_cols=33  Identities=21%  Similarity=0.302  Sum_probs=29.1

Q ss_pred             cccEEEECCCCchHHHHhhhhc-cC-eeEEEecCC
Q 009873           53 SFDYIVVGGGTTGCPLAATLSD-NF-SVLLVERGG   85 (523)
Q Consensus        53 ~~DvIIVGsG~aG~~~A~~Lae-g~-~VlvlE~G~   85 (523)
                      ..-|+|||+|..|+.+|..|+. |. ++.++|...
T Consensus        21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~   55 (200)
T TIGR02354        21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFDV   55 (200)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence            4569999999999999999999 85 799998773

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>TIGR00518 alaDH alanine dehydrogenase

Probab=80.94  E-value=1.3  Score=44.96  Aligned_cols=33  Identities=21%  Similarity=0.324  Sum_probs=29.3

Q ss_pred             cccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           53 SFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        53 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      ..+++|||+|..|..+|..|.. |.+|.++++..
T Consensus       167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~  200 (370)
T TIGR00518       167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINI  200 (370)
T ss_pred             CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            3469999999999999999988 99999999864

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=80.92  E-value=1.4  Score=37.90  Aligned_cols=30  Identities=23%  Similarity=0.351  Sum_probs=27.4

Q ss_pred             EEEECCCCchHHHHhhhhc-c-CeeEEEecCC
Q 009873           56 YIVVGGGTTGCPLAATLSD-N-FSVLLVERGG   85 (523)
Q Consensus        56 vIIVGsG~aG~~~A~~Lae-g-~~VlvlE~G~   85 (523)
                      |+|||.|..|+.+|..|+. | .++.+++...
T Consensus         2 VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~   33 (143)
T cd01483           2 VLLVGLGGLGSEIALNLARSGVGKITLIDFDT   33 (143)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence            7899999999999999999 8 5899999775

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=80.59  E-value=1.7  Score=39.02  Aligned_cols=30  Identities=23%  Similarity=0.257  Sum_probs=27.3

Q ss_pred             EEEECCCCchHHHHhhhhc-c-CeeEEEecCC
Q 009873           56 YIVVGGGTTGCPLAATLSD-N-FSVLLVERGG   85 (523)
Q Consensus        56 vIIVGsG~aG~~~A~~Lae-g-~~VlvlE~G~   85 (523)
                      |+|||+|..|+.+|..|+. | .++.++|...
T Consensus         2 VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~   33 (174)
T cd01487           2 VGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV   33 (174)
T ss_pred             EEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            7899999999999999999 8 4799999875

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]

Probab=80.38  E-value=1.6  Score=41.96  Aligned_cols=34  Identities=26%  Similarity=0.378  Sum_probs=28.6

Q ss_pred             cCCcccEEEECCCCchHHHHhhhhc-c-CeeEEEecC
Q 009873           50 AGKSFDYIVVGGGTTGCPLAATLSD-N-FSVLLVERG   84 (523)
Q Consensus        50 ~~~~~DvIIVGsG~aG~~~A~~Lae-g-~~VlvlE~G   84 (523)
                      ...+| |||||+|..|+.+|.-|.. | .|+.+++=.
T Consensus        72 l~~sy-VVVVG~GgVGSwv~nmL~RSG~qKi~iVDfd  107 (430)
T KOG2018|consen   72 LTNSY-VVVVGAGGVGSWVANMLLRSGVQKIRIVDFD  107 (430)
T ss_pred             hcCcE-EEEEecCchhHHHHHHHHHhcCceEEEechh
Confidence            34556 9999999999999999998 7 788888744

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=80.32  E-value=3.2  Score=43.76  Aligned_cols=61  Identities=20%  Similarity=0.282  Sum_probs=43.3

Q ss_pred             hhCCCCCeEEEeccEEEEEEEcCC--CCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHH
Q 009873          227 EAGNPKNLVVLLNATVNNIIFSNN--GKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLL  303 (523)
Q Consensus       227 ~~~~~~g~~i~~~~~V~~l~~~~~--g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lL  303 (523)
                      +..++.|.+|+++++|++|..+++  +.   .++++|++.+.++.    ..+.+         +.||+|+......+||
T Consensus       227 ~~L~~~Gg~i~~~~~V~~I~~~~~~~~~---~~v~~v~~~~g~~~----~~~~a---------D~VVlA~p~~~~~~Ll  289 (474)
T TIGR02732       227 EYIEARGGKFHLRHKVREIKYEKSSDGS---TRVTGLIMSKPEGK----KVIKA---------DAYVAACDVPGIKRLL  289 (474)
T ss_pred             HHHHHCCCEEECCCEEEEEEEecCCCCc---eeEEEEEEecCCcc----eEEEC---------CEEEECCChHHHHhhC
Confidence            344568999999999999998752  21   03888887542221    23565         9999999988777765

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=80.02  E-value=1.7  Score=44.03  Aligned_cols=31  Identities=26%  Similarity=0.466  Sum_probs=28.6

Q ss_pred             cEEEECCCCchHHHHhhhhc-c-CeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-N-FSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g-~~VlvlE~G~   85 (523)
                      +++|||+|..|.++|..|++ + .+|++.+|-.
T Consensus         3 ~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~   35 (389)
T COG1748           3 KILVIGAGGVGSVVAHKLAQNGDGEVTIADRSK   35 (389)
T ss_pred             cEEEECCchhHHHHHHHHHhCCCceEEEEeCCH
Confidence            68999999999999999998 5 8999999974

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	523
3gdn_A	521	Almond Hydroxynitrile Lyase In Complex With Benzald		4e-95
1ju2_A	536	Crystal Structure Of The Hydroxynitrile Lyase From		4e-95
3red_A	521	3.0 A Structure Of The Prunus Mume Hydroxynitrile L		9e-93
3t37_A	526	Crystal Structure Of Pyridoxine 4-Oxidase From Meso		3e-17
2jbv_A	546	Crystal Structure Of Choline Oxidase Reveals Insigh		6e-17
3nne_A	546	Crystal Structure Of Choline Oxidase S101a Mutant L		6e-17
3fim_B	566	Crystal Structure Of Aryl-Alcohol-Oxidase From Pleu		9e-17
3ljp_A	546	Crystal Structure Of Choline Oxidase V464a Mutant L		9e-17
1gpe_A	587	Glucose Oxidase From Penicillium Amagasakiense Leng		5e-09
1cf3_A	583	Glucose Oxidase From Apergillus Niger Length = 583		5e-08
1cf3_A	583	Glucose Oxidase From Apergillus Niger Length = 583		9e-06
3q9t_A	577	Crystal Structure Analysis Of Formate Oxidase Lengt		5e-07
1naa_A	541	Cellobiose Dehydrogenase Flavoprotein Fragment In C		6e-05
1kdg_A	546	Crystal Structure Of The Flavin Domain Of Cellobios		7e-05
1b8s_A	504	Cholesterol Oxidase From Streptomyces Glu361gln Mut		1e-04
3cnj_A	499	Cholesterol Oxidase From Streptomyces Sp. F359w Mut		1e-04
1b4v_A	504	Cholesterol Oxidase From Streptomyces Length = 504		1e-04
3gyi_A	504	Cholesterol Oxidase From Streptomyces Sp. N485d Mut		5e-04
3b3r_A	506	Crystal Structure Of Streptomyces Cholesterol Oxida		9e-04
1cbo_A	504	Cholesterol Oxidase From Streptomyces His447asn Mut		9e-04
1cc2_A	504	Cholesterol Oxidase From Streptomyces His447gln Mut		9e-04

>pdb|3GDN|A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde Length = 521

Iteration: 1
 Score =  345 bits (885), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 201/509 (39%), Positives = 286/509 (56%), Gaps = 60/509 (11%)
Query: 53  SFDYIVVGGGTTGCPLAATLSDNFSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEYTSV 112
           S+DY++VGGGT+GCPLAATLS+ + VL++ERG  P   P V     F ++L Q D+  + 
Sbjct: 26  SYDYVIVGGGTSGCPLAATLSEKYKVLVLERGSLPTAYPNVLTADGFVYNLQQEDDGKTP 85
Query: 113 AQSFISTDGVQNHRGRVLGGSSAINGGFYSRAREDFVKKAG--WDEELVKKAYEWVESKV 170
            + F+S DG+ N RGRVLGG+S IN G Y+RA       +G  WD +LV + YEWVE  +
Sbjct: 86  VERFVSEDGIDNVRGRVLGGTSIINAGVYARANTSIYSASGVDWDMDLVNQTYEWVEDTI 145
Query: 171 VFPPELTPWQSVVEFGLLEAGILPYNGYSLEHIEGTKIGGTAFDQCGKRHTSADLLEAGN 230
           V+ P    WQSV +   LEAG+ P +G+SL+H EGT+I G+ FD  G RH + +LL  GN
Sbjct: 146 VYKPNSQSWQSVTKTAFLEAGVHPNHGFSLDHEEGTRITGSTFDNKGTRHAADELLNKGN 205
Query: 231 PKXXXXXXXXXXXXIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDV 290
                         IIFSN   A    A G+ +  S+G+    H+A++         G+V
Sbjct: 206 SNNLRVGVHASVEKIIFSN---APGLTATGVIYRDSNGTP---HQAFVRSK------GEV 253
Query: 291 ILSAGALGSPQLLLLSGIGPHDHLKDLNIPTIVDLQEVGEGMQDNPCIAKLVDTMPQKRL 350
           I+SAG +G+PQLLLLSG+GP  +L  LNIP ++    VG+ + DNP     ++ +P    
Sbjct: 254 IVSAGTIGTPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQFLHDNP--RNFINILPPN-- 309
Query: 351 PEPPEVVA-----------------------GVLPISS----NASRMPIAAKLAFPISKG 383
           P  P +V                        G  P SS    N++    A+K+A P+S G
Sbjct: 310 PIEPTIVTVLGISNDFYQCSFSSLPFTTPPFGFFPSSSYPLPNSTFAHFASKVAGPLSYG 369
Query: 384 KLEL-DSTDPRQNPSIKFNYLAKEKDLHECV----KMVQLLD-------KVTKSQSVSSF 431
            L L  S++ R +P++KFNY +   DL  CV    K+ +LL        KV     V  F
Sbjct: 370 SLTLKSSSNVRVSPNVKFNYYSNLTDLSHCVSGMKKIGELLSTDALKPYKVEDLPGVEGF 429
Query: 432 --LGIKPQEKLMSNSDELRKLCKNNVRTFYHYHGGCIVGSVVDKDYRVYGVKGLRVIDGS 489
             LGI P  K  ++       C+ +V +++HYHGGC+VG V+D D+RV G+  LRV+DGS
Sbjct: 430 NILGI-PLPKDQTDDAAFETFCRESVASYWHYHGGCLVGKVLDGDFRVTGINALRVVDGS 488
Query: 490 TFQESPGTNPMATVMMLGRYQGVKLVEER 518
           TF  +P ++P    +MLGRY G+K+++ER
Sbjct: 489 TFPYTPASHPQGFYLMLGRYVGIKILQER 517

>pdb|1JU2|A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond Length = 536

Iteration: 1
 Score =  345 bits (885), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 201/509 (39%), Positives = 286/509 (56%), Gaps = 60/509 (11%)
Query: 53  SFDYIVVGGGTTGCPLAATLSDNFSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEYTSV 112
           S+DY++VGGGT+GCPLAATLS+ + VL++ERG  P   P V     F ++L Q D+  + 
Sbjct: 26  SYDYVIVGGGTSGCPLAATLSEKYKVLVLERGSLPTAYPNVLTADGFVYNLQQEDDGKTP 85
Query: 113 AQSFISTDGVQNHRGRVLGGSSAINGGFYSRAREDFVKKAG--WDEELVKKAYEWVESKV 170
            + F+S DG+ N RGRVLGG+S IN G Y+RA       +G  WD +LV + YEWVE  +
Sbjct: 86  VERFVSEDGIDNVRGRVLGGTSIINAGVYARANTSIYSASGVDWDMDLVNQTYEWVEDTI 145
Query: 171 VFPPELTPWQSVVEFGLLEAGILPYNGYSLEHIEGTKIGGTAFDQCGKRHTSADLLEAGN 230
           V+ P    WQSV +   LEAG+ P +G+SL+H EGT+I G+ FD  G RH + +LL  GN
Sbjct: 146 VYKPNSQSWQSVTKTAFLEAGVHPNHGFSLDHEEGTRITGSTFDNKGTRHAADELLNKGN 205
Query: 231 PKXXXXXXXXXXXXIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDV 290
                         IIFSN   A    A G+ +  S+G+    H+A++         G+V
Sbjct: 206 SNNLRVGVHASVEKIIFSN---APGLTATGVIYRDSNGTP---HQAFVRSK------GEV 253
Query: 291 ILSAGALGSPQLLLLSGIGPHDHLKDLNIPTIVDLQEVGEGMQDNPCIAKLVDTMPQKRL 350
           I+SAG +G+PQLLLLSG+GP  +L  LNIP ++    VG+ + DNP     ++ +P    
Sbjct: 254 IVSAGTIGTPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQFLHDNP--RNFINILPPN-- 309
Query: 351 PEPPEVVA-----------------------GVLPISS----NASRMPIAAKLAFPISKG 383
           P  P +V                        G  P SS    N++    A+K+A P+S G
Sbjct: 310 PIEPTIVTVLGISNDFYQCSFSSLPFTTPPFGFFPSSSYPLPNSTFAHFASKVAGPLSYG 369
Query: 384 KLEL-DSTDPRQNPSIKFNYLAKEKDLHECV----KMVQLLD-------KVTKSQSVSSF 431
            L L  S++ R +P++KFNY +   DL  CV    K+ +LL        KV     V  F
Sbjct: 370 SLTLKSSSNVRVSPNVKFNYYSNLTDLSHCVSGMKKIGELLSTDALKPYKVEDLPGVEGF 429
Query: 432 --LGIKPQEKLMSNSDELRKLCKNNVRTFYHYHGGCIVGSVVDKDYRVYGVKGLRVIDGS 489
             LGI P  K  ++       C+ +V +++HYHGGC+VG V+D D+RV G+  LRV+DGS
Sbjct: 430 NILGI-PLPKDQTDDAAFETFCRESVASYWHYHGGCLVGKVLDGDFRVTGINALRVVDGS 488
Query: 490 TFQESPGTNPMATVMMLGRYQGVKLVEER 518
           TF  +P ++P    +MLGRY G+K+++ER
Sbjct: 489 TFPYTPASHPQGFYLMLGRYVGIKILQER 517

>pdb|3RED|A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 Length = 521

Iteration: 1
 Score =  337 bits (864), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 192/510 (37%), Positives = 286/510 (56%), Gaps = 61/510 (11%)
Query: 53  SFDYIVVGGGTTGCPLAATLSDNFSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEYTSV 112
           S+DY++VGGGT+GCPLAATLS+ + VL++ERG  P   P +     F ++L Q D+  + 
Sbjct: 26  SYDYVIVGGGTSGCPLAATLSEKYKVLVLERGTLPTAYPNLLTSDGFIYNLQQEDDGQTP 85
Query: 113 AQSFISTDGVQNHRGRVLGGSSAINGGFYSRAREDFVKKAG--WDEELVKKAYEWVESKV 170
            + F+S DG+ + RGRVLGG+S IN G Y+RA       +G  WD +LV + Y+WVE  +
Sbjct: 86  VERFVSGDGIDDVRGRVLGGTSMINAGVYARANTKIFSASGIEWDMDLVNQTYDWVEDTI 145
Query: 171 VFPPELTPWQSVVEFGLLEAGILPYNGYSLEHIEGTKIGGTAFDQCGKRHTSADLLEAGN 230
           V+ P+   WQS+ +   LEAG+LP NG+SL+H  GT++ G+ FD  G RH S +LL  G+
Sbjct: 146 VYKPDKQAWQSLTKTAFLEAGVLPDNGFSLDHEAGTRLTGSTFDNNGTRHASDELLNKGD 205
Query: 231 PKXXXXXXXXXXXXIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDV 290
           P             IIFS+N       A G+ +  S+G+    H+A++         G+V
Sbjct: 206 PNNLRVAVHASVEKIIFSSNSSG--VTAIGVIYKDSNGTP---HQAFVRGE------GEV 254
Query: 291 ILSAGALGSPQLLLLSGIGPHDHLKDLNIPTIVDLQEVGEGMQDNPCIAKLVDTMPQKRL 350
           I+SAG +GSPQLLLLSG+GP  +L  LNIP ++    VG+ + DNP     ++ +P   +
Sbjct: 255 IVSAGPIGSPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQFLHDNP--RNFINILPPNPI 312
Query: 351 PEPPEVVAGVLPISSN-----ASRMPIAA-----------------------KLAFPISK 382
            EP  V   VL I+SN      S +P +                        K+  P+S 
Sbjct: 313 -EPSTVT--VLGITSNFYQCSFSSLPFSIPPFAFFPNPTYPLPNSTFAHFVNKVPGPLSY 369
Query: 383 GKLELDS-TDPRQNPSIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSF---------- 431
           G + L+S +D R  P++KFNY +   DL  CV  ++ + ++  S ++  +          
Sbjct: 370 GSITLNSDSDVRVAPNVKFNYYSNSTDLAHCVSGMKKIGELLSSDALKPYKVEDLPGIDG 429
Query: 432 ---LGIKPQEKLMSNSDELRKLCKNNVRTFYHYHGGCIVGSVVDKDYRVYGVKGLRVIDG 488
              LGI P  +  ++       C+  V +++HYHGGC+VG V+D D+RV G+  LRV+DG
Sbjct: 430 FDILGI-PLPENQTDDAAFETFCREAVASYWHYHGGCLVGEVLDGDFRVTGINALRVVDG 488
Query: 489 STFQESPGTNPMATVMMLGRYQGVKLVEER 518
           STF  SP ++P    +MLGRY G K+++ER
Sbjct: 489 STFPYSPASHPQGFYLMLGRYVGSKILQER 518

>pdb|3T37|A Chain A, Crystal Structure Of Pyridoxine 4-Oxidase From Mesorbium Loti Length = 526

Iteration: 1
 Score = 86.3 bits (212), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 126/506 (24%), Positives = 209/506 (41%), Gaps = 96/506 (18%)
Query: 55  DYIVVGGGTTGCPLAATLSDN--FSVLLVERGGSPFGNPLVTDKRFFGFSLLQTD-EYTS 111
           D ++VGGG+ G  LAA LS++    VLL+E G  P    +     +        D +Y +
Sbjct: 19  DIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEEPTDPDIWNPAAWPALQGRSYDWDYRT 78
Query: 112 VAQSFISTDGVQNH--RGRVLGGSSAINGGFYSRAR-EDFV--------KKAGWDEELVK 160
            AQ+   T G  +H  RGR++GGSS ++   Y R    DF         ++ GWDE L  
Sbjct: 79  EAQA--GTAGRAHHWARGRLIGGSSCLHAMGYMRGHPSDFQAWVDASGDRRWGWDELL-- 134
Query: 161 KAYEWVESKVV-----------FPPELTPWQ-SVVEFGLLEAGI---LPYNGYSLE-HIE 204
             ++ +E   +            P  L   + S +    +EAG    LP     LE H  
Sbjct: 135 PVFQAIEDHPLGGDGIHGKGGPLPIHLPADEVSPLARAFIEAGASLGLP----RLEGHNS 190
Query: 205 GTKIGGTAFD---QCGKRHTSADLLEAGNPKXXXXXXXXXXXXIIFSNNGKANESRAHG- 260
           G  IG T      + G+R T+AD                    +  +  G+ N +   G 
Sbjct: 191 GEMIGVTPNSLNIRDGRRVTAAD------------------AWLTKAVRGRKNLTILTGS 232
Query: 261 -IRFIKSDGSSNHMHEAYLNKPGNSSTWGD-VILSAGALGSPQLLLLSGIGPHDHLKDLN 318
            +R +K +G+     E  + + G++  + D ++L AGAL SP LL+ SGIGPHD L    
Sbjct: 233 RVRRLKLEGNQVRSLE-VVGRQGSAEVFADQIVLCAGALESPALLMRSGIGPHDVLDAAG 291
Query: 319 IPTIVDLQEVGEGMQDN---------------PCIAKLVDTMPQKRLPE-----PPEVV- 357
           +  ++D+ ++G  +QD+               P   +  ++M   R         PE+V 
Sbjct: 292 VGCLIDMPDIGRNLQDHLLGAGNLYAARKPVPPSRLQHSESMAYMRADSFTAAGQPEIVV 351
Query: 358 -AGVLPISSNASRMPIAAK-------LAFPISKGKLELDSTDPRQNPSIKFNYLAKEKDL 409
             GV PI S +   P A         +  P S+G + +   +      I   YL   +D 
Sbjct: 352 GCGVAPIVSESFPAPAAGSAYSLLFGITHPTSRGSVRISGPELGDRLIIDPAYLQTGRDR 411
Query: 410 HECVKMVQLLDKVTKSQSVSSFLGIKPQEKLMSNSDELRKLCKNNVRTFYHYHGGCIVG- 468
               + ++    +     ++ +   +      +++ E+      +V T +H  G C +G 
Sbjct: 412 ERFRRALEASRTIGHRDELAGWRERELLPGTPNSAAEMDDFIARSVITHHHPCGTCRMGK 471
Query: 469 ---SVVDKDYRVYGVKGLRVIDGSTF 491
              +VVD + R+  +  L V+D S  
Sbjct: 472 DPDAVVDANLRLKALDNLFVVDASIM 497

>pdb|2JBV|A Chain A, Crystal Structure Of Choline Oxidase Reveals Insights Into The Catalytic Mechanism Length = 546

Iteration: 1
 Score = 85.5 bits (210), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 71/256 (27%), Positives = 115/256 (44%), Gaps = 37/256 (14%)
Query: 289 DVILSAGALGSPQLLLLSGIGPHDHLKDLNIPTIVDLQEVGEGMQDNP-----------C 337
           +V+LS GA+ +P+LL+LSGIGP  HL +  I  +VD   VGE +QD+P            
Sbjct: 264 EVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVGEHLQDHPEGVVQFEAKQPM 323
Query: 338 IAKLVDTM------PQKRLPEPPEVVA--GVLPISSNASR---------MPIAAKLAFPI 380
           +A+           P +   + P+++   G +P   N  R           +   +    
Sbjct: 324 VAESTQWWEIGIFTPTEDGLDRPDLMMHYGSVPFDMNTLRHGYPTTENGFSLTPNVTHAR 383
Query: 381 SKGKLELDSTDPRQNPSIKFNYLAKEK--DLHECVKMVQLLDKVTKSQSVSSFLGIKPQE 438
           S+G + L S D R  P +   Y    +  D+   V  ++   ++    +++ + G +   
Sbjct: 384 SRGTVRLRSRDFRDKPMVDPRYFTDPEGHDMRVMVAGIRKAREIAAQPAMAEWTGRELSP 443
Query: 439 KLMSNSDE-LRKLCKNNVRTFYHYHGGCIVGSV------VDKDYRVYGVKGLRVIDGSTF 491
            + + +DE L+   +    T YH  G   +G+V      +D + RV GV GLRV D S  
Sbjct: 444 GVEAQTDEELQDYIRKTHNTVYHPVGTVRMGAVEDEMSPLDPELRVKGVTGLRVADASVM 503
Query: 492 QESPGTNPMATVMMLG 507
            E    NP  TVMM+G
Sbjct: 504 PEHVTVNPNITVMMIG 519

>pdb|3NNE|A Chain A, Crystal Structure Of Choline Oxidase S101a Mutant Length = 546

Iteration: 1
 Score = 85.5 bits (210), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 71/256 (27%), Positives = 115/256 (44%), Gaps = 37/256 (14%)
Query: 289 DVILSAGALGSPQLLLLSGIGPHDHLKDLNIPTIVDLQEVGEGMQDNP-----------C 337
           +V+LS GA+ +P+LL+LSGIGP  HL +  I  +VD   VGE +QD+P            
Sbjct: 264 EVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVGEHLQDHPEGVVQFEAKQPM 323
Query: 338 IAKLVDTM------PQKRLPEPPEVVA--GVLPISSNASR---------MPIAAKLAFPI 380
           +A+           P +   + P+++   G +P   N  R           +   +    
Sbjct: 324 VAESTQWWEIGIFTPTEDGLDRPDLMMHYGSVPFDMNTLRHGYPTTENGFSLTPNVTHAR 383
Query: 381 SKGKLELDSTDPRQNPSIKFNYLAKEK--DLHECVKMVQLLDKVTKSQSVSSFLGIKPQE 438
           S+G + L S D R  P +   Y    +  D+   V  ++   ++    +++ + G +   
Sbjct: 384 SRGTVRLRSRDFRDKPMVDPRYFTDPEGHDMRVMVAGIRKAREIAAQPAMAEWTGRELSP 443
Query: 439 KLMSNSDE-LRKLCKNNVRTFYHYHGGCIVGSV------VDKDYRVYGVKGLRVIDGSTF 491
            + + +DE L+   +    T YH  G   +G+V      +D + RV GV GLRV D S  
Sbjct: 444 GVEAQTDEELQDYIRKTHNTVYHPVGTVRMGAVEDEMSPLDPELRVKGVTGLRVADASVM 503
Query: 492 QESPGTNPMATVMMLG 507
            E    NP  TVMM+G
Sbjct: 504 PEHVTVNPNITVMMIG 519

>pdb|3FIM|B Chain B, Crystal Structure Of Aryl-Alcohol-Oxidase From Pleurotus Eryingii Length = 566

Iteration: 1
 Score = 85.1 bits (209), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 126/299 (42%), Gaps = 73/299 (24%)
Query: 289 DVILSAGALGSPQLLLLSGIGPHDHLKDLNIPTIVDLQEVGEGMQDN------------- 335
           +V+LSAG++G+P LL LSGIG  + L  + I TIV+   VG  + D+             
Sbjct: 267 EVVLSAGSVGTPILLQLSGIGDENDLSSVGIDTIVNNPSVGRNLSDHLLLPAAFFVNSNQ 326
Query: 336 -------------------------PCIAKLVDTMPQKRLPEP-------PEVVAG---- 359
                                    P  A + + +   RLP         P+  AG    
Sbjct: 327 TFDNIFRDSSEFNVDLDQWTNTRTGPLTALIANHLAWLRLPSNSSIFQTFPDPAAGPNSA 386
Query: 360 -------------VLPISSNASRMPIAAKLAFPISKGKLELDSTDPRQNPSIKFNYLAKE 406
                         +P     S M +   L  P+++G ++L +++P   P I   YL+ E
Sbjct: 387 HWETIFSNQWFHPAIPRPDTGSFMSVTNALISPVARGDIKLATSNPFDKPLINPQYLSTE 446
Query: 407 KDLHECVKMVQLLDKVTKSQSVSSFLGIKP-QEKLMSNSDE--LRKLCKNNVRTFYHYHG 463
            D+   ++ V+   +    Q+ + F+ I+P   +L   +D+  +    ++N  T +H  G
Sbjct: 447 FDIFTMIQAVKSNLRFLSGQAWADFV-IRPFDPRLRDPTDDAAIESYIRDNANTIFHPVG 505
Query: 464 GCIVG------SVVDKDYRVYGVKGLRVIDGSTFQESPGTNPMATVMMLGRYQGVKLVE 516
              +        VVD D +V GV GLR++DGS    +P  +    + ++G+ QG  L++
Sbjct: 506 TASMSPRGASWGVVDPDLKVKGVDGLRIVDGSILPFAPNAHTQGPIYLVGK-QGADLIK 563

>pdb|3LJP|A Chain A, Crystal Structure Of Choline Oxidase V464a Mutant Length = 546

Iteration: 1
 Score = 85.1 bits (209), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 71/256 (27%), Positives = 115/256 (44%), Gaps = 37/256 (14%)
Query: 289 DVILSAGALGSPQLLLLSGIGPHDHLKDLNIPTIVDLQEVGEGMQDNP-----------C 337
           +V+LS GA+ +P+LL+LSGIGP  HL +  I  +VD   VGE +QD+P            
Sbjct: 264 EVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVGEHLQDHPEGVVQFEAKQPM 323
Query: 338 IAKLVDTM------PQKRLPEPPEVVA--GVLPISSNASR---------MPIAAKLAFPI 380
           +A+           P +   + P+++   G +P   N  R           +   +    
Sbjct: 324 VAESTQWWEIGIFTPTEDGLDRPDLMMHYGSVPFDMNTLRHGYPTTENGFSLTPNVTHAR 383
Query: 381 SKGKLELDSTDPRQNPSIKFNYLAKEK--DLHECVKMVQLLDKVTKSQSVSSFLGIKPQE 438
           S+G + L S D R  P +   Y    +  D+   V  ++   ++    +++ + G +   
Sbjct: 384 SRGTVRLRSRDFRDKPMVDPRYFTDPEGHDMRVMVAGIRKAREIAAQPAMAEWTGRELSP 443
Query: 439 KLMSNSDE-LRKLCKNNVRTFYHYHGGCIVGSV------VDKDYRVYGVKGLRVIDGSTF 491
            + + +DE L+   +    T YH  G   +G+V      +D + RV GV GLRV D S  
Sbjct: 444 GVEAQTDEELQDYIRKTHNTAYHPVGTVRMGAVEDEMSPLDPELRVKGVTGLRVADASVM 503
Query: 492 QESPGTNPMATVMMLG 507
            E    NP  TVMM+G
Sbjct: 504 PEHVTVNPNITVMMIG 519

>pdb|1GPE|A Chain A, Glucose Oxidase From Penicillium Amagasakiense Length = 587

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 72/137 (52%), Gaps = 15/137 (10%)
Query: 37  EVPYYMTSDVKEVAGKSFDYIVVGGGTTGCPLAATLSDN--FSVLLVERGGSPFGN-PLV 93
           +V   + SD  +VAGK++DYI+ GGG TG  +AA L++N    VL++E+G     +  ++
Sbjct: 8   DVQSSLLSDPSKVAGKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAII 67
Query: 94  TDKRFFGFSLLQTDEYTSVAQSFISTDGVQNHR-----GRVLGGSSAINGGFYSRAREDF 148
            D   +G         T+V Q++++   + N       G+ LGGS+ ING   S  R D 
Sbjct: 68  EDPNAYGQIF-----GTTVDQNYLTVPLINNRTNNIKAGKGLGGSTLINGD--SWTRPDK 120
Query: 149 VKKAGWDEELVKKAYEW 165
           V+   W++    + + W
Sbjct: 121 VQIDSWEKVFGMEGWNW 137

>pdb|1CF3|A Chain A, Glucose Oxidase From Apergillus Niger Length = 583

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 70/134 (52%), Gaps = 18/134 (13%)
Query: 42  MTSDVKEVAGKSFDYIVVGGGTTGCPLAATLSD--NFSVLLVERGGSPFGN-PLVTDKRF 98
           + +D K+V+G++ DYI+ GGG TG   AA L++  N SVL++E G       P++ D   
Sbjct: 8   LLTDPKDVSGRTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNA 67
Query: 99  FGFSLLQTDEY-TSVAQSFISTDGVQNHR------GRVLGGSSAINGGFYSRAREDFVKK 151
           +G      D + +SV  ++ + +   N++      G  LGGS+ +NGG ++R  +  V  
Sbjct: 68  YG------DIFGSSVDHAYETVELATNNQTALIRSGNGLGGSTLVNGGTWTRPHKAQVDS 121
Query: 152 AGWDEELVKKAYEW 165
             W+     + + W
Sbjct: 122 --WETVFGNEGWNW 133

>pdb|1CF3|A Chain A, Glucose Oxidase From Apergillus Niger Length = 583

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 55/122 (45%), Gaps = 10/122 (8%)
Query: 378 FPISKGKLELDSTDPR-QNPSIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSFLG--I 434
            P ++G + +   DP   + +    Y   E DL       QL   ++ S ++ ++     
Sbjct: 429 LPFTRGYVHILDKDPYLHHFAYDPQYFLNELDLLGQAAATQLARNISNSGAMQTYFAGET 488
Query: 435 KPQEKLMSNSD--ELRKLCKNNVRTFYHYHGGCIV-----GSVVDKDYRVYGVKGLRVID 487
            P + L  ++D     +    + R  YH  G C +     G VVD   RVYGV+GLRVID
Sbjct: 489 IPGDNLAYDADLSAWTEYIPYHFRPNYHGVGTCSMMPKEMGGVVDNAARVYGVQGLRVID 548
Query: 488 GS 489
           GS
Sbjct: 549 GS 550

>pdb|3Q9T|A Chain A, Crystal Structure Analysis Of Formate Oxidase Length = 577

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 72/169 (42%), Gaps = 8/169 (4%)
Query: 361 LPISSNASRMPIAAKLAFPISK-GKLELDSTDPRQNPSIKFNYLAKEKDLHECVKMVQL- 418
            P       + +   L  PIS  G++ L+S DP Q P+I  N+ A + D+    + ++  
Sbjct: 408 FPTPKTGDHLTVVVDLVRPISDPGEVTLNSADPFQQPNINLNFFANDLDIIAMREGIRFS 467
Query: 419 LDKVTKSQSVSSFLGIK-PQEKLMSNSDELRKLCKNNVRTFYHYHGGC-----IVGSVVD 472
            D + K +     +  + P E  + +  E+ +   +  +T +H  G       I   VVD
Sbjct: 468 YDLLFKGEGFKDLVESEYPWEMPLDSDKEMHRAVLDRCQTAFHPTGTARLSKNIDQGVVD 527
Query: 473 KDYRVYGVKGLRVIDGSTFQESPGTNPMATVMMLGRYQGVKLVEERREI 521
              +V+G+K LRV D S     P      +V  +G      +  E +++
Sbjct: 528 PKLKVHGIKKLRVADASVIPIIPDCRIQNSVYAVGEKCADMIKAEHKDL 576

>pdb|1NAA|A Chain A, Cellobiose Dehydrogenase Flavoprotein Fragment In Complex With Cellobionolactam Length = 541

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 108/300 (36%), Gaps = 82/300 (27%)
Query: 288 GDVILSAGALGSPQLLLLSGIGPHDHLKDLNI-PTI----------VDLQEVGEGMQDNP 336
           G VILSAGA G+ ++L  SGIGP D ++ +   PT           ++L  VG   QDNP
Sbjct: 246 GRVILSAGAFGTSRILFQSGIGPTDMIQTVQSNPTAAAALPPQNQWINL-PVGMNAQDNP 304
Query: 337 CIAKLVDTMPQKRL----------PEPPE----------VVAGVLP-------------- 362
            I  LV T P              P P +          V AG  P              
Sbjct: 305 SI-NLVFTHPSIDAYENWADVWSNPRPADAAQYLANQSGVFAGASPKLNFWRAYSGSDGF 363
Query: 363 -----------ISSNASRMPIAAKLAFPI---------SKGKLELDSTDPRQNPSIKFNY 402
                       +S  S +P  A   F I         S+G++ +D+    +   +   +
Sbjct: 364 TRYAQGTVRPGAASVNSSLPYNASQIFTITVYLSTGIQSRGRIGIDAA--LRGTVLTPPW 421
Query: 403 LAKEKDLHECVKMVQLLDKVTKSQSVSSFLGIKPQ--EKLMSNSDELRKLCKNNVRTFYH 460
           L    D  + V +  L D V+   S+     I P   + L    D       N+     H
Sbjct: 422 LVNPVD--KTVLLQALHDVVSNIGSIPGLTMITPDVTQTLEEYVDAYDPATMNS----NH 475
Query: 461 YHGGCIVGS-----VVDKDYRVYGVKGLRVIDGSTFQESPGTNPMATVMMLGRYQGVKLV 515
           +     +GS     VVD + +V+G   L ++D       P  NP  T+M        K++
Sbjct: 476 WVSSTTIGSSPQSAVVDSNVKVFGTNNLFIVDAGIIPHLPTGNPQGTLMSAAEQAAAKIL 535

>pdb|1KDG|A Chain A, Crystal Structure Of The Flavin Domain Of Cellobiose Dehydrogenase Length = 546

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 108/300 (36%), Gaps = 82/300 (27%)
Query: 288 GDVILSAGALGSPQLLLLSGIGPHDHLKDLNI-PTI----------VDLQEVGEGMQDNP 336
           G VILSAGA G+ ++L  SGIGP D ++ +   PT           ++L  VG   QDNP
Sbjct: 251 GRVILSAGAFGTSRILFQSGIGPTDMIQTVQSNPTAAAALPPQNQWINL-PVGMNAQDNP 309
Query: 337 CIAKLVDTMPQKRL----------PEPPE----------VVAGVLP-------------- 362
            I  LV T P              P P +          V AG  P              
Sbjct: 310 SI-NLVFTHPSIDAYENWADVWSNPRPADAAQYLANQSGVFAGASPKLNFWRAYSGSDGF 368
Query: 363 -----------ISSNASRMPIAAKLAFPI---------SKGKLELDSTDPRQNPSIKFNY 402
                       +S  S +P  A   F I         S+G++ +D+    +   +   +
Sbjct: 369 TRYAQGTVRPGAASVNSSLPYNASQIFTITVYLSTGIQSRGRIGIDAA--LRGTVLTPPW 426
Query: 403 LAKEKDLHECVKMVQLLDKVTKSQSVSSFLGIKPQ--EKLMSNSDELRKLCKNNVRTFYH 460
           L    D  + V +  L D V+   S+     I P   + L    D       N+     H
Sbjct: 427 LVNPVD--KTVLLQALHDVVSNIGSIPGLTMITPDVTQTLEEYVDAYDPATMNS----NH 480
Query: 461 YHGGCIVGS-----VVDKDYRVYGVKGLRVIDGSTFQESPGTNPMATVMMLGRYQGVKLV 515
           +     +GS     VVD + +V+G   L ++D       P  NP  T+M        K++
Sbjct: 481 WVSSTTIGSSPQSAVVDSNVKVFGTNNLFIVDAGIIPHLPTGNPQGTLMSAAEQAAAKIL 540

>pdb|1B8S|A Chain A, Cholesterol Oxidase From Streptomyces Glu361gln Mutant Length = 504

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 30/59 (50%)
Query: 459 YHYHGGCIVGSVVDKDYRVYGVKGLRVIDGSTFQESPGTNPMATVMMLGRYQGVKLVEE 517
           YH  GGC++G   D   RV G K L V DGS    S G NP  T+  L      +++++
Sbjct: 441 YHPLGGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVERIIKQ 499

>pdb|3CNJ|A Chain A, Cholesterol Oxidase From Streptomyces Sp. F359w Mutant (0.95a) Length = 499

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 30/59 (50%)
Query: 459 YHYHGGCIVGSVVDKDYRVYGVKGLRVIDGSTFQESPGTNPMATVMMLGRYQGVKLVEE 517
           YH  GGC++G   D   RV G K L V DGS    S G NP  T+  L      +++++
Sbjct: 439 YHPLGGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVERIIKQ 497

>pdb|1B4V|A Chain A, Cholesterol Oxidase From Streptomyces Length = 504

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 30/59 (50%)
Query: 459 YHYHGGCIVGSVVDKDYRVYGVKGLRVIDGSTFQESPGTNPMATVMMLGRYQGVKLVEE 517
           YH  GGC++G   D   RV G K L V DGS    S G NP  T+  L      +++++
Sbjct: 441 YHPLGGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVERIIKQ 499

>pdb|3GYI|A Chain A, Cholesterol Oxidase From Streptomyces Sp. N485d Mutant (1.0a) Length = 504

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 30/59 (50%)
Query: 459 YHYHGGCIVGSVVDKDYRVYGVKGLRVIDGSTFQESPGTNPMATVMMLGRYQGVKLVEE 517
           YH  GGC++G   D   RV G K L V DGS    S G +P  T+  L      +++++
Sbjct: 441 YHPLGGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVDPFVTITALAERNVERIIKQ 499

>pdb|3B3R|A Chain A, Crystal Structure Of Streptomyces Cholesterol Oxidase H447qE361Q Mutant Bound To Glycerol (0.98a) Length = 506

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 29/59 (49%)
Query: 459 YHYHGGCIVGSVVDKDYRVYGVKGLRVIDGSTFQESPGTNPMATVMMLGRYQGVKLVEE 517
           Y   GGC++G   D   RV G K L V DGS    S G NP  T+  L      +++++
Sbjct: 443 YQPLGGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVERIIKQ 501

>pdb|1CBO|A Chain A, Cholesterol Oxidase From Streptomyces His447asn Mutant Length = 504

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 30/59 (50%)
Query: 459 YHYHGGCIVGSVVDKDYRVYGVKGLRVIDGSTFQESPGTNPMATVMMLGRYQGVKLVEE 517
           Y+  GGC++G   D   RV G K L V DGS    S G NP  T+  L      +++++
Sbjct: 441 YNPLGGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVERIIKQ 499

>pdb|1CC2|A Chain A, Cholesterol Oxidase From Streptomyces His447gln Mutant Length = 504

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 29/59 (49%)
Query: 459 YHYHGGCIVGSVVDKDYRVYGVKGLRVIDGSTFQESPGTNPMATVMMLGRYQGVKLVEE 517
           Y   GGC++G   D   RV G K L V DGS    S G NP  T+  L      +++++
Sbjct: 441 YQPLGGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVERIIKQ 499

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	523
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	1e-153
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	5e-76
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	5e-72
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	4e-71
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	3e-67
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	2e-64
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	6e-58
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	4e-48
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	8e-19
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	2e-36
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	8e-32
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	2e-13
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	5e-09
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	2e-04
3atr_A	453	Conserved archaeal protein; saturating double bond	5e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	8e-04

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A* Length = 536

 Score =  446 bits (1149), Expect = e-153
 Identities = 191/506 (37%), Positives = 284/506 (56%), Gaps = 50/506 (9%)

Query: 52  KSFDYIVVGGGTTGCPLAATLSDNFSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEYTS 111
            S+DY++VGGGT+GCPLAATLS+ + VL++ERG  P   P V     F ++L Q D+  +
Sbjct: 25  GSYDYVIVGGGTSGCPLAATLSEKYKVLVLERGSLPTAYPNVLTADGFVYNLQQEDDGKT 84

Query: 112 VAQSFISTDGVQNHRGRVLGGSSAINGGFYSRA-REDFVK-KAGWDEELVKKAYEWVESK 169
             + F+S DG+ N RGRVLGG+S IN G Y+RA    +      WD +LV + YEWVE  
Sbjct: 85  PVERFVSEDGIDNVRGRVLGGTSIINAGVYARANTSIYSASGVDWDMDLVNQTYEWVEDT 144

Query: 170 VVFPPELTPWQSVVEFGLLEAGILPYNGYSLEHIEGTKIGGTAFDQCGKRHTSADLLEAG 229
           +V+ P    WQSV +   LEAG+ P +G+SL+H EGT+I G+ FD  G RH + +LL  G
Sbjct: 145 IVYKPNSQSWQSVTKTAFLEAGVHPNHGFSLDHEEGTRITGSTFDNKGTRHAADELLNKG 204

Query: 230 NPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGD 289
           N  NL V ++A+V  IIFSN        A G+ +  S+G+    H+A++       + G+
Sbjct: 205 NSNNLRVGVHASVEKIIFSNAPG---LTATGVIYRDSNGT---PHQAFVR------SKGE 252

Query: 290 VILSAGALGSPQLLLLSGIGPHDHLKDLNIPTIVDLQEVGEGMQDNPCIAKLVDT----- 344
           VI+SAG +G+PQLLLLSG+GP  +L  LNIP ++    VG+ + DNP     +       
Sbjct: 253 VIVSAGTIGTPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQFLHDNPRNFINILPPNPIE 312

Query: 345 ------------MPQKRLP--EPPEVVAGVLPISS----NASRMPIAAKLAFPISKGKLE 386
                         Q             G  P SS    N++    A+K+A P+S G L 
Sbjct: 313 PTIVTVLGISNDFYQCSFSSLPFTTPPFGFFPSSSYPLPNSTFAHFASKVAGPLSYGSLT 372

Query: 387 L-DSTDPRQNPSIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSFLG------------ 433
           L  S++ R +P++KFNY +   DL  CV  ++ + ++  + ++  +              
Sbjct: 373 LKSSSNVRVSPNVKFNYYSNLTDLSHCVSGMKKIGELLSTDALKPYKVEDLPGVEGFNIL 432

Query: 434 IKPQEKLMSNSDELRKLCKNNVRTFYHYHGGCIVGSVVDKDYRVYGVKGLRVIDGSTFQE 493
             P  K  ++       C+ +V +++HYHGGC+VG V+D D+RV G+  LRV+DGSTF  
Sbjct: 433 GIPLPKDQTDDAAFETFCRESVASYWHYHGGCLVGKVLDGDFRVTGINALRVVDGSTFPY 492

Query: 494 SPGTNPMATVMMLGRYQGVKLVEERR 519
           +P ++P    +MLGRY G+K+++ER 
Sbjct: 493 TPASHPQGFYLMLGRYVGIKILQERS 518

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A* Length = 583

 Score =  249 bits (638), Expect = 5e-76
 Identities = 125/591 (21%), Positives = 197/591 (33%), Gaps = 155/591 (26%)

Query: 42  MTSDVKEVAGKSFDYIVVGGGTTGCPLAATLSDN--FSVLLVERGGSPFGNPLVTDKRFF 99
           + +D K+V+G++ DYI+ GGG TG   AA L++N   SVL++E G         +D+   
Sbjct: 8   LLTDPKDVSGRTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSY------ESDRGPI 61

Query: 100 -----GFSLLQTDE----YTSVAQSFISTDGVQNH--RGRVLGGSSAINGGFYSRA-RED 147
                 +  +        Y +V  +   T+        G  LGGS+ +NGG ++R  +  
Sbjct: 62  IEDLNAYGDIFGSSVDHAYETVELA---TNNQTALIRSGNGLGGSTLVNGGTWTRPHKAQ 118

Query: 148 F---VKKAG-----WDEEL--VKKAYEWVESKV---------------------VFPPEL 176
                   G     WD       +A                               P + 
Sbjct: 119 VDSWETVFGNEGWNWDNVAAYSLQAERARAPNAKQIAAGHYFNASCHGVNGTVHAGPRDT 178

Query: 177 TPWQSVVEFGLLEAGI---LP----YNGYSLEHIEGTKIGGTAFDQC----GKRHTSAD- 224
               S +   L+ A     +P    +             G + F         R  +A  
Sbjct: 179 GDDYSPIVKALMSAVEDRGVPTKKDFGCGDPH-------GVSMFPNTLHEDQVRSDAARE 231

Query: 225 -LLEAGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGN 283
            LL      NL VL    V  ++ S NG     RA G+ F    G   + H  Y      
Sbjct: 232 WLLPNYQRPNLQVLTGQYVGKVLLSQNG--TTPRAVGVEFGTHKG---NTHNVYAKH--- 283

Query: 284 SSTWGDVILSAGALGSPQLLLLSGIGPHDHLKDLNIPTIVDLQEVGEGMQD--------- 334
                +V+L+AG+  SP +L  SGIG    L+ L I T+VDL  VG  +QD         
Sbjct: 284 -----EVLLAAGSAVSPTILEYSGIGMKSILEPLGIDTVVDLP-VGLNLQDQTTATVRSR 337

Query: 335 -------------NPCIAKLVDTMPQKR---------------------------LPEPP 354
                             +      +K                            L +  
Sbjct: 338 ITSAGAGQGQAAWFATFNETFGDYSEKAHELLNTKLEQWAEEAVARGGFHNTTALLIQYE 397

Query: 355 EVVAGVLPISSNASRMPIAAKLAF--------PISKGKLELDSTDPR-QNPSIKFNYLAK 405
                ++  +   S + +              P ++G + +   DP   + +    Y   
Sbjct: 398 NYRDWIVNHNVAYSELFLDTAGVASFDVWDLLPFTRGYVHILDKDPYLHHFAYDPQYFLN 457

Query: 406 EKDLHECVKMVQLLDKVTKSQSVSSFLG--IKPQEKLMSNSDELRKLC--KNNVRTFYHY 461
           E DL       QL   ++ S ++ ++      P + L  ++D          + R  YH 
Sbjct: 458 ELDLLGQAAATQLARNISNSGAMQTYFAGETIPGDNLAYDADLSAWTEYIPYHFRPNYHG 517

Query: 462 HGGCIVG-----SVVDKDYRVYGVKGLRVIDGSTFQESPGTNPMATVMMLG 507
            G C +       VVD   RVYGV+GLRVIDGS       ++ M     + 
Sbjct: 518 VGTCSMMPKEMGGVVDNAARVYGVQGLRVIDGSIPPTQMSSHVMTVFYAMA 568

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti} Length = 526

 Score =  237 bits (607), Expect = 5e-72
 Identities = 124/542 (22%), Positives = 198/542 (36%), Gaps = 130/542 (23%)

Query: 52  KSFDYIVVGGGTTGCPLAATLSDN--FSVLLVERGGSPFGNPLVTDKRFF-----GFSLL 104
            + D ++VGGG+ G  LAA LS++    VLL+E G                     +  L
Sbjct: 16  PNCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEE--------PTDPDIWNPAAWPAL 67

Query: 105 QTDE----YTSVAQSFISTDGVQNH--RGRVLGGSSAINGGFYSR-AREDF---VKKAG- 153
           Q       Y + AQ+   T G  +H  RGR++GGSS ++   Y R    DF   V  +G 
Sbjct: 68  QGRSYDWDYRTEAQAG--TAGRAHHWARGRLIGGSSCLHAMGYMRGHPSDFQAWVDASGD 125

Query: 154 ----WDEEL--VKKA--YE-------------WVESKVVFPPELTPWQSVVEFGLLEAGI 192
               WDE L   +    +               +         L   ++ +E G    G+
Sbjct: 126 RRWGWDELLPVFQAIEDHPLGGDGIHGKGGPLPIHLPADEVSPLA--RAFIEAGA-SLGL 182

Query: 193 LP----YNGYSLEHIEGTKIGGTAFDQC---GKRHTSAD--LLEA-GNPKNLVVLLNATV 242
            P    +N   +        G T        G+R T+AD  L +A    KNL +L  + V
Sbjct: 183 -PRLEGHNSGEMI-------GVTPNSLNIRDGRRVTAADAWLTKAVRGRKNLTILTGSRV 234

Query: 243 NNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQL 302
             +    N      +   +  +   GS     E +            ++L AGAL SP L
Sbjct: 235 RRLKLEGN------QVRSLEVVGRQGS----AEVFA---------DQIVLCAGALESPAL 275

Query: 303 LLLSGIGPHDHLKDLNIPTIVDLQEVGEGMQDNPCIAKL--------------------- 341
           L+ SGIGPHD L    +  ++D+ ++G  +QD+   A                       
Sbjct: 276 LMRSGIGPHDVLDAAGVGCLIDMPDIGRNLQDHLLGAGNLYAARKPVPPSRLQHSESMAY 335

Query: 342 VDTMPQKRLPEP-PEVVAGVLPISSNASRMPIAAKLAF--------PISKGKLELDSTDP 392
           +         +P   V  GV PI S +   P A   A+        P S+G + +   + 
Sbjct: 336 MRADSFTAAGQPEIVVGCGVAPIVSESFPAPAAGS-AYSLLFGITHPTSRGSVRISGPEL 394

Query: 393 RQNPSIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSFLG--IKPQEKLMSNSD-ELRK 449
                I   YL   +D     + ++    +     ++ +    + P      NS  E+  
Sbjct: 395 GDRLIIDPAYLQTGRDRERFRRALEASRTIGHRDELAGWRERELLPGT---PNSAAEMDD 451

Query: 450 LCKNNVRTFYHYHGGCIVG----SVVDKDYRVYGVKGLRVIDGSTFQESPGTNPMATVMM 505
               +V T +H  G C +G    +VVD + R+  +  L V+D S           A V+ 
Sbjct: 452 FIARSVITHHHPCGTCRMGKDPDAVVDANLRLKALDNLFVVDASIMPNLTAGPIHAAVLA 511

Query: 506 LG 507
           + 
Sbjct: 512 IA 513

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A* Length = 546

 Score =  235 bits (603), Expect = 4e-71
 Identities = 129/561 (22%), Positives = 204/561 (36%), Gaps = 140/561 (24%)

Query: 43  TSDVKEVAGKSFDYIVVGGGTTGCPLAATLSDN--FSVLLVERGGSPFGNPLVTDKRFF- 99
             +++ ++ + FDYIVVGGG+ G  +AA LS++   SV LVE G          D+    
Sbjct: 3   IDNIENLSDREFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPD--------DRGVPE 54

Query: 100 -----GFSLLQTDE----YTSVAQSFISTDGVQNH-RGRVLGGSSAINGGFYSRA-REDF 148
                 +  L        Y    Q     +    H R +V+GG S+ N      A RED 
Sbjct: 55  VLQLDRWMELLESGYDWDYPIEPQENG--NSFMRHARAKVMGGCSSHNSCIAFWAPREDL 112

Query: 149 ---VKKAG-----WDEEL--VKKAYEWVESKVVFPPELT------PW------------Q 180
                K G      +      K+     E+     P+        P              
Sbjct: 113 DEWEAKYGATGWNAEAAWPLYKRL----ETNEDAGPDAPHHGDSGPVHLMNVPPKDPTGV 168

Query: 181 SVVEFGLLEAGILP----YNGYSLEHIEGTKIGGTAFD----QCGKRHTSAD--LLEAGN 230
           ++++    +AGI P      G     + G       F       G R +S+   +     
Sbjct: 169 ALLDACE-QAGI-PRAKFNTGT--TVVNG--AN--FFQINRRADGTRSSSSVSYIHPIVE 220

Query: 231 PKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDV 290
            +N  +L       ++F  +      R  G+  +    +  H H              +V
Sbjct: 221 QENFTLLTGLRARQLVFDADR-----RCTGVDIVD--SAFGHTHRLTARN--------EV 265

Query: 291 ILSAGALGSPQLLLLSGIGPHDHLKDLNIPTIVDLQEVGEGMQDNPCIAKLVDTMPQKRL 350
           +LS GA+ +P+LL+LSGIGP  HL +  I  +VD   VGE +QD+P      + + Q   
Sbjct: 266 VLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVGEHLQDHP------EGVVQFEA 319

Query: 351 PEP------------------PEVVA-------GVLPISSNASRMPIAAKL-AF------ 378
            +P                    +         G +P   N  R         F      
Sbjct: 320 KQPMVAESTQWWEIGIFTPTEDGLDRPDLMMHYGSVPFDMNTLRHGYPTTENGFSLTPNV 379

Query: 379 --PISKGKLELDSTDPRQNPSIKFNYLAKE--KDLHECVKMVQLLDKVTKSQSVSSFLG- 433
               S+G + L S D R  P +   Y       D+   V  ++   ++    +++ + G 
Sbjct: 380 THARSRGTVRLRSRDFRDKPMVDPRYFTDPEGHDMRVMVAGIRKAREIAAQPAMAEWTGR 439

Query: 434 -IKPQEKLMSNSDELRKLCKNNVRTFYHYHGGCIVG------SVVDKDYRVYGVKGLRVI 486
            + P  +  ++ +EL+   +    T YH  G   +G      S +D + RV GV GLRV 
Sbjct: 440 ELSPGVEAQTD-EELQDYIRKTHNTVYHPVGTVRMGAVEDEMSPLDPELRVKGVTGLRVA 498

Query: 487 DGSTFQESPGTNPMATVMMLG 507
           D S   E    NP  TVMM+G
Sbjct: 499 DASVMPEHVTVNPNITVMMIG 519

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A* Length = 546

 Score =  225 bits (576), Expect = 3e-67
 Identities = 106/558 (18%), Positives = 164/558 (29%), Gaps = 127/558 (22%)

Query: 49  VAGKSFDYIVVGGGTTGCPLAATLS-DNFSVLLVERGG---SPFGN----PLVTDKRFFG 100
           V+   +DYI+VG G  G   A  LS     VLL+ERGG      G     P  T      
Sbjct: 3   VSATPYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGPSTKQTGGTYVAPWATSSGLTK 62

Query: 101 FSLLQTDE-YTSVAQSFISTDGVQNH--RGRVLGGSSAINGGFYSR-AREDFVKKAGWDE 156
           F +    E   + +  F            G ++GG +++NG  Y      DF    GW  
Sbjct: 63  FDIPGLFESLFTDSNPFW--WCKDITVFAGCLVGGGTSVNGALYWYPNDGDFSSSVGWPS 120

Query: 157 E------LVKKAYEWVES----------KVVFPPELTPWQSVVEFGLLEAGILPYNGYSL 200
                     K    + S           +     +   Q +   G  +A I     Y  
Sbjct: 121 SWTNHAPYTSKLSSRLPSTDHPSTDGQRYLEQSFNVV-SQLLKGQGYNQATINDNPNYKD 179

Query: 201 EHIEGTKIGGTAFDQC-GKRHTSAD--LLEAGNPKNLVVLLNATVNNIIFSNNGKANESR 257
                   G +AFD   GKR       L  A    N     N  V+N++ + +      +
Sbjct: 180 H---V--FGYSAFDFLNGKRAGPVATYLQTALARPNFTFKTNVMVSNVVRNGS------Q 228

Query: 258 AHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSGIGPHDHLKDL 317
             G++        N                  VILSAGA G+ ++L  SGIGP D ++ +
Sbjct: 229 ILGVQTNDPTLGPNGFIPVTPKG--------RVILSAGAFGTSRILFQSGIGPTDMIQTV 280

Query: 318 NIPTIVDLQE----------VGEGMQDNPCI-----AKLVDTMPQKRLPEPPEVVAGVL- 361
                               VG   QDNP I        +D              A    
Sbjct: 281 QSNPTAAAALPPQNQWINLPVGMNAQDNPSINLVFTHPSIDAYENWADVWSNPRPADAAQ 340

Query: 362 -------PISSNAS-------------------------------RMPIAAKLAF----- 378
                    +  +                                 +P  A   F     
Sbjct: 341 YLANQSGVFAGASPKLNFWRAYSGSDGFTRYAQGTVRPGAASVNSSLPYNASQIFTITVY 400

Query: 379 ----PISKGKLELDSTDPRQNPSIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSFLGI 434
                 S+G++ +D+        +   +L    D    ++ +  +     S    +   I
Sbjct: 401 LSTGIQSRGRIGIDAALR--GTVLTPPWLVNPVDKTVLLQALHDVVSNIGSIPGLTM--I 456

Query: 435 KPQEKLMSNSDELRKLCKNNVRTFYHYHGGCIVG-----SVVDKDYRVYGVKGLRVIDGS 489
            P        +E             H+     +G     +VVD + +V+G   L ++D  
Sbjct: 457 TPDV--TQTLEEYVDAYDPATMNSNHWVSSTTIGSSPQSAVVDSNVKVFGTNNLFIVDAG 514

Query: 490 TFQESPGTNPMATVMMLG 507
                P  NP  T+M   
Sbjct: 515 IIPHLPTGNPQGTLMSAA 532

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1 Length = 587

 Score =  218 bits (558), Expect = 2e-64
 Identities = 103/585 (17%), Positives = 182/585 (31%), Gaps = 144/585 (24%)

Query: 42  MTSDVKEVAGKSFDYIVVGGGTTGCPLAATLSDN--FSVLLVERGGSPFGNPLVTDKRFF 99
           + SD  +VAGK++DYI+ GGG TG  +AA L++N    VL++E+G     +  + +    
Sbjct: 13  LLSDPSKVAGKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPN- 71

Query: 100 GFSLLQTDE----YTSVAQSFISTDGVQNH--RGRVLGGSSAINGGFYSRA-REDF---- 148
            +  +        Y +V       +   N+   G+ LGGS+ ING  ++R  +       
Sbjct: 72  AYGQIFGTTVDQNYLTVPL----INNRTNNIKAGKGLGGSTLINGDSWTRPDKVQIDSWE 127

Query: 149 ----------------VKKA-----GWDEELVKKAYEWVES-------KVVFPPELTPWQ 180
                           +KKA         +L                 +        PW 
Sbjct: 128 KVFGMEGWNWDNMFEYMKKAEAARTPTAAQLAAGHSFNATCHGTNGTVQSGARDNGQPWS 187

Query: 181 SVVE-F--GLLEAGILP---YNGYSLEHIEGTKIGGTAFDQC----GKRHTSAD--LLEA 228
            +++     +   G+     +             G +           R  +A   LL  
Sbjct: 188 PIMKALMNTVSALGVPVQQDFLCGHPR-------GVSMIMNNLDENQVRVDAARAWLLPN 240

Query: 229 GNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWG 288
               NL +L    V  ++F         +A G+ F  +   +    + +           
Sbjct: 241 YQRSNLEILTGQMVGKVLFKQTASGP--QAVGVNFGTNKAVN---FDVFAKH-------- 287

Query: 289 DVILSAGALGSPQLLLLSGIGP---------------------HDHL-----------KD 316
           +V+L+AG+  SP +L  SGIG                       D               
Sbjct: 288 EVLLAAGSAISPLILEYSGIGLKSVLDQANVTQLLDLPVGINMQDQTTTTVSSRASSAGA 347

Query: 317 LNIPTIVDLQEVGEGMQDNPCIAKLVDT--------------MPQKRLP--EPPEVVAGV 360
                +             P    L++T                       +       +
Sbjct: 348 GQGQAVFFANFTETFGDYAPQARDLLNTKLDQWAEETVARGGFHNVTALKVQYENYRNWL 407

Query: 361 LPISSNASRMPIAAKLAF--------PISKGKLELDSTDPRQNPS-IKFNYLAKEKDLHE 411
           L      + + +  +           P ++G + + S+DP          +   E DL  
Sbjct: 408 LDEDVAFAELFMDTEGKINFDLWDLIPFTRGSVHILSSDPYLWQFANDPKFFLNEFDLLG 467

Query: 412 CVKMVQLLDKVTKSQSVSSFLG--IKPQEKLMSNS--DELRKLCKNNVRTFYHYHGGCIV 467
                +L   +T   ++  +      P   L+ N+   +       N R  +H    C +
Sbjct: 468 QAAASKLARDLTSQGAMKEYFAGETLPGYNLVQNATLSQWSDYVLQNFRPNWHAVSSCSM 527

Query: 468 GS-----VVDKDYRVYGVKGLRVIDGSTFQESPGTNPMATVMMLG 507
            S     VVD   +VYG +GLRVIDGS       ++ M     + 
Sbjct: 528 MSRELGGVVDATAKVYGTQGLRVIDGSIPPTQVSSHVMTIFYGMA 572

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii} Length = 566

 Score =  201 bits (513), Expect = 6e-58
 Identities = 118/586 (20%), Positives = 196/586 (33%), Gaps = 165/586 (28%)

Query: 54  FDYIVVGGGTTGCPLAATLSDN--FSVLLVERGGSPFGNPLVTDKRFF------GFSLLQ 105
           FDY+VVG G  G  +AA L+++   SVL++E G S        D+             L 
Sbjct: 3   FDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVS--------DENVLGAEAPLLAPGLV 54

Query: 106 TDE-----YTSVAQSFISTDGVQNH-----RGRVLGGSSAINGGFYSR-AREDF------ 148
            +      YT+ AQ+     G         RGR+LGGSS+++     R + EDF      
Sbjct: 55  PNSIFDWNYTTTAQA-----GYNGRSIAYPRGRMLGGSSSVHYMVMMRGSTEDFDRYAAV 109

Query: 149 VKKAGWD-----------EELVKKAYEWVESKVVFPP----------ELTPWQSVVEFGL 187
               GW+           E +V  A     S    P            L  + + ++  +
Sbjct: 110 TGDEGWNWDNIQQFVRKNEMVVPPADNHNTSGEFIPAVHGTNGSVSISLPGFPTPLDDRV 169

Query: 188 LEAG-----ILP----YNGYSLEHIEGTKIGGTAFDQC----GKRHTSAD--LLEAGNPK 232
           L                              G ++       G+R +S+   L  A +  
Sbjct: 170 LATTQEQSEEFFFNPDMGTGHPL--------GISWSIASVGNGQRSSSSTAYLRPAQSRP 221

Query: 233 NLVVLLNATVNNIIFSNNGKANES-RAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVI 291
           NL VL+NA V  ++ S       + R       +              K        +V+
Sbjct: 222 NLSVLINAQVTKLVNSGTTNGLPAFRCVEYAEQEG----APTTTVCAKK--------EVV 269

Query: 292 LSAGALGSPQLLLLSGIGP----------------------HDHL-----------KDLN 318
           LSAG++G+P LL LSGIG                        DHL           +  +
Sbjct: 270 LSAGSVGTPILLQLSGIGDENDLSSVGIDTIVNNPSVGRNLSDHLLLPAAFFVNSNQTFD 329

Query: 319 IPTIVDLQEVGEGMQ----------DNPCIA-------KLVDTMPQKRLPEPPEVVAGVL 361
                  +   +  Q                                  P      A   
Sbjct: 330 NIFRDSSEFNVDLDQWTNTRTGPLTALIANHLAWLRLPSNSSIFQTFPDPAAGPNSAHWE 389

Query: 362 PISSNASRMPIAAKLAF------------PISKGKLELDSTDPRQNPSIKFNYLAKEKDL 409
            I SN    P   +               P+++G ++L +++P   P I   YL+ E D+
Sbjct: 390 TIFSNQWFHPAIPRPDTGSFMSVTNALISPVARGDIKLATSNPFDKPLINPQYLSTEFDI 449

Query: 410 HECVKMVQLLDKVTKSQSVSSFLG--IKPQEKLMSNSDELRKLCKNNVRTFYHYHGGCIV 467
              ++ V+   +    Q+ + F+     P+ +  ++   +    ++N  T +H  G   +
Sbjct: 450 FTMIQAVKSNLRFLSGQAWADFVIRPFDPRLRDPTDDAAIESYIRDNANTIFHPVGTASM 509

Query: 468 G------SVVDKDYRVYGVKGLRVIDGSTFQESPGTNPMATVMMLG 507
                   VVD D +V GV GLR++DGS    +P  +    + ++G
Sbjct: 510 SPRGASWGVVDPDLKVKGVDGLRIVDGSILPFAPNAHTQGPIYLVG 555

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae} Length = 577

 Score =  174 bits (443), Expect = 4e-48
 Identities = 68/342 (19%), Positives = 118/342 (34%), Gaps = 93/342 (27%)

Query: 49  VAGKSFDYIVVGGGTTGCPLAATLSDN--FSVLLVERGGSPFGNPLVTDKRFF-----GF 101
             G  FD+++VGGGT G  +A  L++N   +VL+VE G          +           
Sbjct: 2   TDGSHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIGN------PEDIPEITTPSSA 55

Query: 102 SLLQTDE----YTSVAQSFISTDGVQN-------HRGRVLGGSSAINGGFYSR-AREDF- 148
             L+  +    Y +                     RG+ LGGSS++N   +    +  F 
Sbjct: 56  MDLRNSKYDWAYKTTMV-----RRDDYERIEKPNTRGKTLGGSSSLNYFTWVPGHKATFD 110

Query: 149 --------------V----KKA-----GWDEELVKKAY-----EWVESKVVFPPELTPW- 179
                         +    +K+            +            S      E+ P+ 
Sbjct: 111 QWEEFGGKEWTWDPLVPYLRKSATYHDDPRLYSPELEKIGGGGPIPISHAELIDEMAPFR 170

Query: 180 QSVVEFGLLEAGILP----YNGYSLEHIEGTKIGGTAFDQC---GKRHTSADLLEAGNPK 232
           +++ +      G  P         ++       G T        G+R  S   L   N  
Sbjct: 171 ENLTKAWK-SMGQ-PLIENIYDGEMD-------GLTHCCDTIYRGQRSGSF--LFVKNKP 219

Query: 233 NLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVIL 292
           N+ ++       +I +   +       G+  + + G   +    + ++        +VIL
Sbjct: 220 NITIVPEVHSKRLIINEADR----TCKGVTVVTAAG---NELNFFADR--------EVIL 264

Query: 293 SAGALGSPQLLLLSGIGPHDHLKDLNIPTIVDLQEVGEGMQD 334
           S G   +P+LL+LSGIGP   L    I TIVD + VG+ + D
Sbjct: 265 SQGVFETPKLLMLSGIGPTRELSRHGINTIVDSRHVGQNLMD 306

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae} Length = 577

 Score = 88.8 bits (221), Expect = 8e-19
 Identities = 37/140 (26%), Positives = 62/140 (44%), Gaps = 14/140 (10%)

Query: 379 PIS-KGKLELDSTDPRQNPSIKFNYLAKEKDLH---ECVKMVQLLDKVTKSQSVSSFLG- 433
           PIS  G++ L+S DP Q P+I  N+ A + D+    E ++     D + K +     +  
Sbjct: 426 PISDPGEVTLNSADPFQQPNINLNFFANDLDIIAMREGIRFSY--DLLFKGEGFKDLVES 483

Query: 434 -IKPQEKLMSNSDELRKLCKNNVRTFYHYHGGCIVG-----SVVDKDYRVYGVKGLRVID 487
               +  L S+  E+ +   +  +T +H  G   +       VVD   +V+G+K LRV D
Sbjct: 484 EYPWEMPLDSD-KEMHRAVLDRCQTAFHPTGTARLSKNIDQGVVDPKLKVHGIKKLRVAD 542

Query: 488 GSTFQESPGTNPMATVMMLG 507
            S     P      +V  +G
Sbjct: 543 ASVIPIIPDCRIQNSVYAVG 562

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A* Length = 504

 Score =  140 bits (354), Expect = 2e-36
 Identities = 94/535 (17%), Positives = 165/535 (30%), Gaps = 106/535 (19%)

Query: 51  GKSFDYIVVGGGTTGCPLAATLSDN-FSVLLVERG---------GSPFGNPLVTDKR--- 97
           G     +V+G G      A  L +     L++E G         G+ F   L  DKR   
Sbjct: 3   GGYVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLWNQPGPDGNIFCGMLNPDKRSSW 62

Query: 98  ------------FFGFSLLQTDEYTSVAQSFISTDGVQNHRGRVLGGSSAINGGFYSRAR 145
                        +   + +  +  +     ++ D +  + GR +GG S +NGG     +
Sbjct: 63  FKNRTEAPLGSFLWLDVVNRNIDPYAGVLDRVNYDQMSVYVGRGVGGGSLVNGGMAVEPK 122

Query: 146 EDFVKK---AGWDEELVKKAYEWVES---------KVVFPPELTPWQSVVEFGLLEAGIL 193
             + ++        E+  + +    S         K     E   +  V      +AG+ 
Sbjct: 123 RSYFEEILPRVDSSEMYDRYFPRANSMLRVNHIDTKWFEDTEWYKFARVSREQAGKAGLG 182

Query: 194 PY---NGYSLEHIEGTKIGGTAFDQCGKRHT--------SAD---LLEAGNPKNLVVLLN 239
                N Y   +++    G                    S D   L  A     + +   
Sbjct: 183 TVFVPNVYDFGYMQREAAGEVPKSALATEVIYGNNHGKQSLDKTYLAAALGTGKVTIQTL 242

Query: 240 ATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGS 299
             V  I  + +G      A  +    +DG      E          +   + L AG+LGS
Sbjct: 243 HQVKTIRQTKDGG----YALTVEQKDTDGKLLATKEI---------SCRYLFLGAGSLGS 289

Query: 300 PQLLLLSGIGPHDHLKDLNIPTIVDLQEVGEGMQDNPCIAKLVDT-------MPQKRLPE 352
            +LL+ +       L +LN        EVG G   N  I               Q  +P 
Sbjct: 290 TELLVRARDT--GTLPNLN-------SEVGAGWGPNGNIMTARANHMWNPTGAHQSSIPA 340

Query: 353 ---------PPEVVAGVLPI-SSNASRMPIAAKLAFPISKGKLELDSTDPRQNPSIKFNY 402
                       V A + P+ +   + + +   +     +G    D+   R    + +  
Sbjct: 341 LGIDAWDNSDSSVFAEIAPMPAGLETWVSLYLAITKNPQRGTFVYDAATDR--AKLNWTR 398

Query: 403 LAKEKDLHECVKMVQLLDKVTKSQSVSSFLGIKPQEKLMSNSDELRKLCKNNVRTFYHYH 462
                 ++    +   ++K   +       G + +                     YH  
Sbjct: 399 DQNAPAVNAAKALFDRINKANGTIYRYDLFGTQLKAF--------------ADDFCYHPL 444

Query: 463 GGCIVGSVVDKDYRVYGVKGLRVIDGSTFQESPGTNPMATVMMLGRYQGVKLVEE 517
           GGC++G   D   RV G K L V DGS    S G NP  T+  L      +++++
Sbjct: 445 GGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVERIIKQ 499

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A* Length = 507

 Score =  127 bits (320), Expect = 8e-32
 Identities = 81/533 (15%), Positives = 162/533 (30%), Gaps = 107/533 (20%)

Query: 53  SFDYIVVGGGTTGCPLAATLSDN-FSVLLVERG---------GSPFGNPLVTDKRFFGFS 102
               +V+G G  G   A  L+       +VE G         G  F   L  DKR    +
Sbjct: 11  RVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGRSWDTPGSDGKIFCGMLNPDKRSMWLA 70

Query: 103 LLQTDEYTS--------------VAQSFISTDGVQNHRGRVLGGSSAINGGFYSRAREDF 148
                  ++                       G++ ++GR +GG S +NGG     + ++
Sbjct: 71  DKTDQPVSNFMGFGINKSIDRYVGVLDSERFSGIKVYQGRGVGGGSLVNGGMAVTPKRNY 130

Query: 149 VK----KAGWDEELVKKAYEWVESKV---------VFPPELTPWQSVVEFGLLEAGILPY 195
            +        +E    K +    + +             E   +          +G    
Sbjct: 131 FEEILPSVDSNEMY-NKYFPRANTGLGVNNIDQAWFESTEWYKFARTGRKTAQRSGFTTA 189

Query: 196 ---NGYSLEHIEG--------TKIGGTAFDQCGKRHTSAD---LLEAGNPKNLVVLLNAT 241
              N Y  E+++         + +GG           S D   L +A     L +     
Sbjct: 190 FVPNVYDFEYMKKEAAGQVTKSGLGGEVIYGNNAGKKSLDKTYLAQAAATGKLTITTLHR 249

Query: 242 VNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQ 301
           V  +  +          + +   + D   N +    +           V  +AG++G+ +
Sbjct: 250 VTKVAPATGSG------YSVTMEQIDEQGNVVATKVVTADR-------VFFAAGSVGTSK 296

Query: 302 LLLLSGIGPHDHLKDLNIPTIVDLQEVGEGMQDNP-CIAKLVDTMPQKRLPEPPEVVAGV 360
           LL+        HL +L+        +VGEG  +N   +    + M      +   +    
Sbjct: 297 LLVSMKAQ--GHLPNLS-------SQVGEGWGNNGNIMVGRANHMWDATGSKQATIPTMG 347

Query: 361 LPISSNASRMPIAAKLAFPIS----------------KGKLELDSTDPRQNPSIKFNYLA 404
           +   ++ +    A     P                  + + + +S   + + +   +   
Sbjct: 348 IDNWADPTAPIFAEIAPLPAGLETYVSLYLAITKNPERARFQFNSGTGKVDLTWAQSQNQ 407

Query: 405 KEKDLHECVKMVQLLDKVTKSQSVSSFLGIKPQEKLMSNSDELRKLCKNNVRTFYHYHGG 464
           K  D+ +  K+   +++   +   +   G+  +                     YH  GG
Sbjct: 408 KGIDMAK--KVFDKINQKEGTIYRTDLFGVYYKTW--------------GDDFTYHPLGG 451

Query: 465 CIVGSVVDKDYRVYGVKGLRVIDGSTFQESPGTNPMATVMMLGRYQGVKLVEE 517
            ++    D   R+    GL V+DGS    + G NP  T+  L      K++  
Sbjct: 452 VLLNKATDNFGRLPEYPGLYVVDGSLVPGNVGVNPFVTITALAERNMDKIISS 504

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ... Length = 623

 Score = 71.4 bits (174), Expect = 2e-13
 Identities = 49/360 (13%), Positives = 89/360 (24%), Gaps = 77/360 (21%)

Query: 31  PEGKGKEVPYYMTSDVKEVAGKSFDYIVVGGGTTGCPLAATLSDN-FSVLLVERGGSPFG 89
                   P              +D ++VG G  GC  A  L    + V + + G    G
Sbjct: 24  KASASSLPPLPGPDKKVPGMDIKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDSG 83

Query: 90  NPLVTDKRFFGFSLLQTDEYTSVAQSFISTDGVQNH------------------------ 125
             +   K+         D++ +V Q  + +  V  +                        
Sbjct: 84  LKIGAHKKNTVEYQKNIDKFVNVIQGQLMSVSVPVNTLVVDTLSPTSWQASTFFVRNGSN 143

Query: 126 -------------RGRVLGGSSAINGGFYSR-AREDFVKKAGWDEELVKKAYEWVESKVV 171
                          RV+GG S        R  RE        D +      EW      
Sbjct: 144 PEQDPLRNLSGQAVTRVVGGMSTAWTCATPRFDREQRPLLVKDDADADDA--EW----DR 197

Query: 172 FPPELTPWQSVVEFGLLEAGILPYNGYSLE-------HIEGTKIGGTAFDQCGKRHTSAD 224
              +   +         E+         L          +   +  T         +SA+
Sbjct: 198 LYTKAESYFQTGTDQFKESIRHNLVLNKLTEEYKGQRDFQQIPLAATRRSPTFVEWSSAN 257

Query: 225 --------LLEAGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEA 276
                          +   +        ++ +            +     D  S    E 
Sbjct: 258 TVFDLQNRPNTDAPEERFNLFPAVACERVVRNALNS----EIESLHIH--DLISGDRFEI 311

Query: 277 YLNKPGNSSTWGDVILSAGALGSPQLLLLSGIGPHDHLKDLNIPTIVDLQEVGEGMQDNP 336
             +           +L+AGA+ + QLL+ SG G        N P ++    +G  + +  
Sbjct: 312 KADV---------YVLTAGAVHNTQLLVNSGFGQLGRPNPANPPELLPS--LGSYITEQS 360

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ... Length = 623

 Score = 57.9 bits (139), Expect = 5e-09
 Identities = 23/140 (16%), Positives = 42/140 (30%), Gaps = 23/140 (16%)

Query: 388 DSTDPRQNPSIKFNYLAKEKDLHECVK-MVQLLDKVTKSQSVSSFLGIKPQEKLMSNSDE 446
             TD    P   F++        +  + M+  +  ++        +G      L  +  +
Sbjct: 490 KITDAYNMPQPTFDFRFPAGRTSKEAEDMMTDMCVMSAK------IGGF----LPGSLPQ 539

Query: 447 LRKLCKNNVRTFYHYHGGCIVG-------SVVDKDYRVYGVKGLRVIDGSTFQESPGTNP 499
             +          H  G   +G         V+ D RV+G K L +        + G NP
Sbjct: 540 FMEP-----GLVLHLGGTHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANP 594

Query: 500 MATVMMLGRYQGVKLVEERR 519
             T M L       + +   
Sbjct: 595 TLTAMSLAIKSCEYIKQNFT 614

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* Length = 453

 Score = 41.7 bits (98), Expect = 5e-04
 Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 54 FDYIVVGGGTTGCPLAATLSDN-FSVLLVERGGSP 87
          +D +++GGG  G   A  LS     +LLV+     
Sbjct: 7  YDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWN 41

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 5e-04
 Identities = 52/363 (14%), Positives = 111/363 (30%), Gaps = 101/363 (27%)

Query: 213 FDQCGKRHTSADLLEAGNP---KNL----------VVLLNATVNNIIFSNNGKANESRAH 259
           F+    ++   D+L         N            +L    +++II S +     S   
Sbjct: 9   FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKD---AVSGTL 65

Query: 260 GIRFIKSDGSSNHMHEAYLNKPGNSS-TWGDVILSAGALGSPQLLLLSGIGPHDHLKDLN 318
            + F         M + ++ +    +  +                L+S I      +  +
Sbjct: 66  RL-FWTLLSKQEEMVQKFVEEVLRINYKF----------------LMSPI--KTEQRQPS 106

Query: 319 IPTIVDLQEVGEGMQDNPCIAKLVDTMPQKRL----------PEPPEVVAGVLPISSNAS 368
           + T + +++      DN   AK   +  Q  L          P    ++ G         
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG--------- 157

Query: 369 RMPIAAK--LAFPISKGKLELDSTDPRQNPSIKFNY------LAKEKDLHECVKMVQ-LL 419
            +  + K  +A       L++  +   Q    K ++      L         ++M+Q LL
Sbjct: 158 -VLGSGKTWVA-------LDVCLSYKVQC---KMDFKIFWLNLKNCNSPETVLEMLQKLL 206

Query: 420 DKVTKSQSVSSFLGIKPQEKLMSNSDELRKLCKN-----------NV---RTFYHYHGGC 465
            ++  + +  S      + ++ S   ELR+L K+           NV   + +  ++  C
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC 266

Query: 466 --IV----GSVVDKDYRVYGVKGLRVIDGSTFQESPGTNPMATVMMLGRYQGVKLVEERR 519
             ++      V D       +        S    S    P     +L +Y   +  +  R
Sbjct: 267 KILLTTRFKQVTDF------LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320

Query: 520 EIC 522
           E+ 
Sbjct: 321 EVL 323

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} Length = 421

 Score = 40.9 bits (96), Expect = 8e-04
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 53 SFDYIVVGGGTTGCPLAATLSDN-FSVLLVERGGSP 87
            D +V+G G  G   A+ ++ + F V +VE+   P
Sbjct: 5  KVDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQKFP 40

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	523
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	100.0
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	100.0
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	100.0
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	100.0
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	100.0
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	100.0
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	100.0
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	100.0
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	100.0
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	100.0
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	100.0
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	99.64
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	99.54
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	99.52
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	99.45
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	99.41
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	99.4
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	99.38
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	99.35
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	99.34
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	99.3
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	99.28
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	99.26
3dme_A	369	Conserved exported protein; structural genomics, P	99.25
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	99.24
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	99.23
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	99.22
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	99.17
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	99.17
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	99.13
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	99.12
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	99.11
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	99.1
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.08
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	99.04
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	99.03
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.03
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	99.02
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	99.01
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	99.01
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	98.99
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	98.97
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	98.96
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	98.96
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	98.93
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	98.93
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	98.91
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	98.89
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	98.89
3atr_A	453	Conserved archaeal protein; saturating double bond	98.89
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	98.87
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	98.82
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	98.74
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	98.74
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	98.7
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	98.7
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	98.69
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	98.66
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	98.66
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	98.64
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	98.63
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	98.62
2cul_A	232	Glucose-inhibited division protein A-related PROT	98.61
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.6
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	98.59
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	98.59
2bry_A	497	NEDD9 interacting protein with calponin homology a	98.55
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	98.55
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	98.55
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	98.5
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	98.5
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	98.48
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	98.48
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	98.47
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	98.44
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	98.41
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	98.41
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	98.4
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	98.39
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	98.38
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.37
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	98.33
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	98.31
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	98.3
3r9u_A	315	Thioredoxin reductase; structural genomics, center	98.29
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	98.29
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	98.26
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	98.25
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	98.24
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	98.24
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	98.23
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	98.21
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	98.2
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	98.19
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	98.17
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	98.16
4fk1_A	304	Putative thioredoxin reductase; structural genomic	98.15
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	98.13
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	98.12
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	98.12
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	98.11
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	98.11
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	98.11
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	98.08
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	98.07
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	98.03
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	98.0
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	97.99
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	97.96
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	97.95
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	97.92
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	97.86
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	97.85
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	97.83
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	97.81
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	97.81
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	97.79
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	97.76
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.76
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	97.76
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	97.75
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	97.75
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	97.75
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	97.74
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	97.74
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	97.73
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	97.73
4dna_A	463	Probable glutathione reductase; structural genomic	97.72
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	97.72
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	97.71
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	97.7
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	97.7
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	97.69
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	97.68
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	97.67
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	97.66
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	97.66
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	97.65
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	97.63
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	97.61
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	97.6
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	97.58
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	97.57
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	97.56
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	97.56
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	97.55
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	97.53
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	97.51
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	97.5
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	97.49
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	97.48
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	97.47
1ojt_A	482	Surface protein; redox-active center, glycolysis,	97.47
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	97.47
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	97.47
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	97.46
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	97.45
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	97.44
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	97.44
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	97.44
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	97.42
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	97.41
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	97.4
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	97.39
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	97.39
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	97.37
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	97.37
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	97.35
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	97.35
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.34
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	97.29
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	97.29
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	97.28
4hb9_A	412	Similarities with probable monooxygenase; flavin,	97.28
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	97.22
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	97.21
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	97.21
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	97.21
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	97.2
1fec_A	490	Trypanothione reductase; redox-active center, oxid	97.2
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	97.18
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	97.16
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	97.12
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	97.05
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	97.01
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	96.97
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	96.96
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	96.95
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	96.95
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	96.94
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	96.94
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	96.89
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	96.86
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	96.85
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	96.85
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	96.83
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	96.76
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	96.76
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	96.75
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	96.75
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	96.74
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	96.73
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	96.7
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	96.68
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	96.67
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	96.66
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	96.65
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	96.58
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	96.57
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	96.57
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	96.55
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	96.54
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	96.52
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	96.46
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	96.44
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	96.43
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	96.34
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	96.33
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	96.27
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	96.25
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	96.24
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	96.23
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	96.21
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	96.16
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	96.12
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	96.12
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	96.12
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	96.09
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	96.06
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	95.92
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	95.91
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	95.9
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	95.89
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	95.86
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	95.84
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	95.83
1ojt_A	482	Surface protein; redox-active center, glycolysis,	95.83
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	95.79
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	95.78
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	95.75
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	95.74
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	95.73
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	95.71
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	95.69
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	95.67
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	95.64
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	95.56
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	95.5
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	95.43
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	95.43
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	95.3
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	95.25
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	95.22
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	95.06
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	95.0
4dna_A	463	Probable glutathione reductase; structural genomic	94.99
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	94.98
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	94.89
1fec_A	490	Trypanothione reductase; redox-active center, oxid	94.88
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	94.8
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	94.77
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	94.71
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	94.62
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	93.97
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	93.94
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	93.89
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	93.11
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	92.94
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	92.1
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	91.96
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	91.89
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	91.82
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	91.6
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	91.29
1id1_A	153	Putative potassium channel protein; RCK domain, E.	90.83
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	90.62
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	90.3
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	90.21
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	89.6
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	89.5
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	89.22
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	87.13
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	86.87
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	86.86
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	86.7
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	86.61
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	85.98
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	85.95
4fk1_A	304	Putative thioredoxin reductase; structural genomic	85.8
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	85.72
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	85.41
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	85.36
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	85.07
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	84.8
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	84.41
4g65_A	461	TRK system potassium uptake protein TRKA; structur	84.24
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	84.06
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	84.05
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	83.89
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	83.86
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	83.76
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	83.58
3c85_A	183	Putative glutathione-regulated potassium-efflux S	83.52
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	83.27
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	82.72
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	82.64
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	82.48
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	82.26
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	82.24
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	82.14
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	81.9
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	81.68
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	81.28
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	81.23
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	81.12
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	80.43
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	80.27
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	80.13
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	80.09

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=100.00  E-value=1.6e-75  Score=620.23  Aligned_cols=466  Identities=41%  Similarity=0.731  Sum_probs=369.6

Q ss_pred             ccccccccccCCcccEEEECCCCchHHHHhhhhccCeeEEEecCCCCCCCCCccccchhccccCCCCCCccccccCcCCC
Q 009873           41 YMTSDVKEVAGKSFDYIVVGGGTTGCPLAATLSDNFSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEYTSVAQSFISTD  120 (523)
Q Consensus        41 ~~~~~~~~~~~~~~DvIIVGsG~aG~~~A~~Laeg~~VlvlE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (523)
                      ++..........+|||||||||.+|+++|.+|+||.+|||||+|+....++....+..+...+.....|.+.+|.....+
T Consensus        14 ~~~~~~~~~~~~~yD~IIVGsG~AG~v~A~rLseg~~VlvLEaG~~~~~~~~~~~~~~~~~~~~~~~~~~t~~q~~~~~~   93 (536)
T 1ju2_A           14 FAYDATDLELEGSYDYVIVGGGTSGCPLAATLSEKYKVLVLERGSLPTAYPNVLTADGFVYNLQQEDDGKTPVERFVSED   93 (536)
T ss_dssp             GEEEGGGSCSEEEEEEEEECCSTTHHHHHHHHTTTSCEEEECSSBCGGGSGGGGBGGGHHHHHHSCCCSSSSEEEEECTT
T ss_pred             cccCcccccccCcccEEEECccHHHHHHHHHHhcCCcEEEEecCCCcCCCcceecchhHhhhccCCCcCcCCCccccCCC
Confidence            34444344456789999999999999999999999999999999865434444444444332222223566677666677


Q ss_pred             ceeecCceecccccccCCccccCCChhhHhhCC--CCHHHHHHHhHhhhccccCCCCCChhHHHHHHHHHHcCCCCCCCC
Q 009873          121 GVQNHRGRVLGGSSAINGGFYSRAREDFVKKAG--WDEELVKKAYEWVESKVVFPPELTPWQSVVEFGLLEAGILPYNGY  198 (523)
Q Consensus       121 ~~~~~~g~~lGG~s~~~~~~~~r~~~~~~~~~~--w~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~  198 (523)
                      .+.+.+|+++||+|.+|+|++.|+.+.+++..+  |+++++.+||+++|+.+.+.|...++...+.+++.+.|+.+.++.
T Consensus        94 ~~~~~rg~~lGGsS~in~~~~~R~~~~d~~~~G~~W~~~~~~p~~~~~e~~~~~~~~~~~~~~~~~~a~~~~G~~~~~~~  173 (536)
T 1ju2_A           94 GIDNVRGRVLGGTSIINAGVYARANTSIYSASGVDWDMDLVNQTYEWVEDTIVYKPNSQSWQSVTKTAFLEAGVHPNHGF  173 (536)
T ss_dssp             SCEEEEECBTTGGGGTSCCEECBCCTTSSTTSSSCCCHHHHHHHHHHHHHHHCBCCCCCHHHHHHHHHHHHTTCCCEEEE
T ss_pred             cceeecceeccccccccCeEEEeCCHHHHhhccCCCChHHHHHHHHhhhcccCCCCCCCcHHHHHHHHHHHcCCCCCCCc
Confidence            788899999999999999999999887777667  999999999999999887777777888889999999998665543


Q ss_pred             CcCCCCcceeeeeEEcCCCeeechHhhhhhCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEE-
Q 009873          199 SLEHIEGTKIGGTAFDQCGKRHTSADLLEAGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAY-  277 (523)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~-  277 (523)
                      ..+...++..+.+.++.+|.|+++..+++.+++.|++|+++++|++|+++++++   .+++||++.+.+|+   .+++. 
T Consensus       174 ~~~~~~g~~~g~~~~~~~g~r~s~~~~~~~~~~~~~~v~~~~~v~~i~~~~~~~---~~~~GV~~~~~~g~---~~~~~v  247 (536)
T 1ju2_A          174 SLDHEEGTRITGSTFDNKGTRHAADELLNKGNSNNLRVGVHASVEKIIFSNAPG---LTATGVIYRDSNGT---PHQAFV  247 (536)
T ss_dssp             CCBCCSEEEECEESBCTTSBBCCGGGGGGGSCTTTEEEEESCEEEEEEECCSSS---CBEEEEEEECTTSC---EEEEEE
T ss_pred             ccCCCCCceeeeEEECCCCeEecHHHhhhhhcCCCcEEEeCCEEEEEEECCCCC---CEEEEEEEEeCCCc---eEEEEe
Confidence            333344444444445578889887776667788999999999999999987421   18999999875676   65663 


Q ss_pred             -ecCCCCCCCCCcEEEecCCchhHHHHHhhCCCChhhhhhCCCCceecCcccccccccCcCceEEEecCCCCCCCCCcce
Q 009873          278 -LNKPGNSSTWGDVILSAGALGSPQLLLLSGIGPHDHLKDLNIPTIVDLQEVGEGMQDNPCIAKLVDTMPQKRLPEPPEV  356 (523)
Q Consensus       278 -a~~~~~~~~~~~VILaaGa~~tp~lLl~SGig~~~~l~~~gi~~~~~~p~vG~~l~dh~~~~~~~~~~~~~~~~~~~~~  356 (523)
                       +        ++.||||||+++||+||++||||+.++|+++||+++.++|+||+||+||+...+.+... .+......+.
T Consensus       248 ~a--------~k~VILaaGa~~sp~lL~~SGig~~~~l~~~gi~~~~dlP~VG~NL~DH~~~~~~~~~~-~~~~~~~~~~  318 (536)
T 1ju2_A          248 RS--------KGEVIVSAGTIGTPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQFLHDNPRNFINILPP-NPIEPTIVTV  318 (536)
T ss_dssp             EE--------EEEEEECCHHHHHHHHHHHTTEECHHHHHHTTCCCSEECTTTTEEEECCEEEEEEECCS-SCCCCCCCCE
T ss_pred             cc--------CCEEEEcCcccCCHHHHHHcCCCCHHHHHhcCCceEecCcccccchhcCcceeEEEEeC-CCcccccchh
Confidence             3        59999999999999999999999999999999999999999999999999877665332 2221111111


Q ss_pred             eee---ee-----------------cCCC-C---CCcccEEeeecCcCcceEEEe-cCCCCCCCCeeecCCCCChhhHHH
Q 009873          357 VAG---VL-----------------PISS-N---ASRMPIAAKLAFPISKGKLEL-DSTDPRQNPSIKFNYLAKEKDLHE  411 (523)
Q Consensus       357 ~g~---~~-----------------~~~~-~---~~~~~~~~~~~~p~s~g~v~l-~~~d~~~~p~i~~~~~~~~~D~~~  411 (523)
                      .+.   |+                 +... .   .....+...++.|.|||+|+| .++||.+.|.|+++|+.++.|++.
T Consensus       319 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~P~SrG~V~L~~s~Dp~~~P~i~~~y~~~~~D~~~  398 (536)
T 1ju2_A          319 LGISNDFYQCSFSSLPFTTPPFGFFPSSSYPLPNSTFAHFASKVAGPLSYGSLTLKSSSNVRVSPNVKFNYYSNLTDLSH  398 (536)
T ss_dssp             EEECSSEEEEEEEECCCSSCCBTTBSSSCCCCCSSCEEEEEEEESSCSCCEEEECSCSSCTTSCCEECCCTTCSHHHHHH
T ss_pred             hhHHHHHHHcCCCCCCCChhhheeecCcccCCCCcceEEEeeecCCCCcceEEEeCCCCCcccCceecccccCCccHHHH
Confidence            111   11                 0000 0   001123455678999999999 788999999999999999999999


Q ss_pred             HHHHHHHHHHHhcccccccccCCCC------------CCCCCCCHHHHHHHHHcccccccccccceecccccCCCCcEec
Q 009873          412 CVKMVQLLDKVTKSQSVSSFLGIKP------------QEKLMSNSDELRKLCKNNVRTFYHYHGGCIVGSVVDKDYRVYG  479 (523)
Q Consensus       412 ~~~~~~~~~~i~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~H~~Gt~~MG~VvD~~~rv~g  479 (523)
                      +.++++.+++++++.++..+...+.            .|....+++++++|++....+.+|++|||+||+|||+++||||
T Consensus       399 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~p~~~~~d~~~~~~ir~~~~t~~H~~GTcrMG~VVD~~lrV~G  478 (536)
T 1ju2_A          399 CVSGMKKIGELLSTDALKPYKVEDLPGVEGFNILGIPLPKDQTDDAAFETFCRESVASYWHYHGGCLVGKVLDGDFRVTG  478 (536)
T ss_dssp             HHHHHHHHHHHHTSGGGGGGCSSCCSTTCSCCBSSSCCCSCTTCHHHHHHHHHHHCEECSCCEESSCBTTTBCTTSBBTT
T ss_pred             HHHHHHHHHHHHcCccchhhhccccccCCCccccccCCCcccCCHHHHHHHHHhccCccccCcCccCCccEECCCCeEcC
Confidence            9999999999999998887764432            1222457899999999999999999999999999999999999


Q ss_pred             cCCcEEeeccccCCCCCCCcHHHHHHHHHHHHHHHHHHHhhh
Q 009873          480 VKGLRVIDGSTFQESPGTNPMATVMMLGRYQGVKLVEERREI  521 (523)
Q Consensus       480 ~~nL~V~D~Sv~P~~~~~nPtlTi~Ala~r~a~~i~~~~~~~  521 (523)
                      ++||||+|+||||+++++||++|+||||+|+|+.|++++++.
T Consensus       479 v~nLrVvDaSv~P~~~~~np~~t~~aiAer~A~~ii~~~~~~  520 (536)
T 1ju2_A          479 INALRVVDGSTFPYTPASHPQGFYLMLGRYVGIKILQERSAS  520 (536)
T ss_dssp             CBTEEECSGGGCSSCSSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEeecccCCCCCCcchHHHHHHHHHHHHHHHHHhhhhh
Confidence            999999999999999999999999999999999999988764

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=100.00  E-value=5e-75  Score=615.70  Aligned_cols=448  Identities=26%  Similarity=0.359  Sum_probs=354.8

Q ss_pred             cccEEEECCCCchHHHHhhhhc--cCeeEEEecCCCCCCCCCccccchhccccC---CCCCCccccccCcCCCceeecCc
Q 009873           53 SFDYIVVGGGTTGCPLAATLSD--NFSVLLVERGGSPFGNPLVTDKRFFGFSLL---QTDEYTSVAQSFISTDGVQNHRG  127 (523)
Q Consensus        53 ~~DvIIVGsG~aG~~~A~~Lae--g~~VlvlE~G~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g  127 (523)
                      +|||||||||.+||++|.||+|  +.+|||||+|+....++....+..+.....   ..+.|.+.+|....++.+.+.+|
T Consensus         2 ~yD~IIVG~G~aG~v~A~rLse~~~~~VlllEaG~~~~~~~~~~~p~~~~~~~~~~~~~w~~~t~pq~~~~~r~~~~~rG   81 (566)
T 3fim_B            2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSDENVLGAEAPLLAPGLVPNSIFDWNYTTTAQAGYNGRSIAYPRG   81 (566)
T ss_dssp             CEEEEESCCSTTHHHHHHHHTTSTTCCEEEECSSBCCTTCGGGTSGGGSGGGSSSSTTBCCCBCCCCGGGTTCCCBCCCB
T ss_pred             CcCEEEECCcHHHHHHHHHHHhCcCCcEEEEecCCcccCCCceeCcchHHHhcCCCccccccccccCCCCCCceEeccCC
Confidence            6999999999999999999998  699999999986644444444444433322   23467888898888899999999


Q ss_pred             eecccccccCCccccCCChhhHh-------hCCCCHHHHHHHhHhhhccccC-------------------------CCC
Q 009873          128 RVLGGSSAINGGFYSRAREDFVK-------KAGWDEELVKKAYEWVESKVVF-------------------------PPE  175 (523)
Q Consensus       128 ~~lGG~s~~~~~~~~r~~~~~~~-------~~~w~~~~~~~~~~~~~~~~~~-------------------------~p~  175 (523)
                      ++|||+|++|+|++.|+.+.+++       ..+|.++++.+||++.|+....                         .+.
T Consensus        82 k~lGGsS~iN~m~~~Rg~~~d~d~W~~~~G~~gWs~~~~~pyf~k~E~~~~~~~~~~~~~~~~~~~hG~~Gp~~v~~~~~  161 (566)
T 3fim_B           82 RMLGGSSSVHYMVMMRGSTEDFDRYAAVTGDEGWNWDNIQQFVRKNEMVVPPADNHNTSGEFIPAVHGTNGSVSISLPGF  161 (566)
T ss_dssp             CBTTGGGGTSCCBCCCCCHHHHHHHHHHHTCTTSSHHHHHHHHHHHEEECCCTTCCCCTTTSCGGGSCBSSSEEEBSCSS
T ss_pred             cEEcCcccccceEEecCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhccCCccccccccccCCccccCCCCCeeeecCCC
Confidence            99999999999999999876654       2579999999999999876421                         112


Q ss_pred             CChhHHHHHHHHHHc--CCCCCCCCCcCCCCcceeeeeEEcCCCeeechHhh-hh-hCCCCCeEEEeccEEEEEEEc---
Q 009873          176 LTPWQSVVEFGLLEA--GILPYNGYSLEHIEGTKIGGTAFDQCGKRHTSADL-LE-AGNPKNLVVLLNATVNNIIFS---  248 (523)
Q Consensus       176 ~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-l~-~~~~~g~~i~~~~~V~~l~~~---  248 (523)
                      ..+....+.+++.++  |++...+.......|.......++ +|.|+++... |. +..++|++|++++.|+||+++   
T Consensus       162 ~~~~~~~~~~a~~~~~~G~~~~~d~n~~~~~G~~~~~~~~~-~g~R~sa~~ayL~p~~~r~NL~Vlt~a~V~rIl~~~~~  240 (566)
T 3fim_B          162 PTPLDDRVLATTQEQSEEFFFNPDMGTGHPLGISWSIASVG-NGQRSSSSTAYLRPAQSRPNLSVLINAQVTKLVNSGTT  240 (566)
T ss_dssp             CCTHHHHHHHHHHHTHHHHCBCSCGGGSCCCEEEECCBSEE-TTEECCHHHHTHHHHTTCTTEEEESSCEEEEEECCEEE
T ss_pred             CCHHHHHHHHHHHHHhcCCCccCCCCCCCcceEEeeeeecC-CCEEcCHHHHHhhhhccCCCeEEECCCEEEEEEeecCC
Confidence            356678888899988  874322211111222222112222 6888887654 54 667899999999999999998   


Q ss_pred             CCCCCCCceeeEEEEEecCC-CCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHhhCCCChhhhhhCCCCceecCcc
Q 009873          249 NNGKANESRAHGIRFIKSDG-SSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSGIGPHDHLKDLNIPTIVDLQE  327 (523)
Q Consensus       249 ~~g~~~~~~v~GV~~~~~~g-~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~SGig~~~~l~~~gi~~~~~~p~  327 (523)
                      ++.+    +++||++.+.+| +   .++++|        +|+||||||+|+||+|||+||||++++|+++||+++.++|+
T Consensus       241 ~g~~----rA~GVe~~~~~g~~---~~~v~A--------~kEVILsAGai~SPqlL~lSGIGp~~~L~~~gI~vv~dlPg  305 (566)
T 3fim_B          241 NGLP----AFRCVEYAEQEGAP---TTTVCA--------KKEVVLSAGSVGTPILLQLSGIGDENDLSSVGIDTIVNNPS  305 (566)
T ss_dssp             TTEE----ECCEEEEESSTTSC---CEEEEE--------EEEEEECCHHHHHHHHHHHTTEECHHHHHHTTCCCSEECTT
T ss_pred             CCCC----EEEEEEEEECCCce---EEEEEe--------eeEEEEecCCcCChHHHHhcCCCChHHHhhcCCCceecCcc
Confidence            2212    999999987556 6   778887        79999999999999999999999999999999999999999


Q ss_pred             cccccccCcCceEEEecCCCCCCC--------------------------CCcceeeeeecCCC----------------
Q 009873          328 VGEGMQDNPCIAKLVDTMPQKRLP--------------------------EPPEVVAGVLPISS----------------  365 (523)
Q Consensus       328 vG~~l~dh~~~~~~~~~~~~~~~~--------------------------~~~~~~g~~~~~~~----------------  365 (523)
                      ||+||+||+.+.+.|.........                          ...+. ..|+....                
T Consensus       306 VG~NLqDH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~~~~-~~f~~~~~~~~~~~~~~~~~~~~~  384 (566)
T 3fim_B          306 VGRNLSDHLLLPAAFFVNSNQTFDNIFRDSSEFNVDLDQWTNTRTGPLTALIANH-LAWLRLPSNSSIFQTFPDPAAGPN  384 (566)
T ss_dssp             TTCSBBCCEEECCEEEESCSCSSGGGGTCHHHHHHHHHHHHHHSCSGGGCCSCSE-EEEECCCTTCGGGGTSCCCSSSTT
T ss_pred             hhhhhhcCccceEEEEeCCCcccchhhcChHHHHHHHHHHHhcCCCCcccChhhh-eeeeccccchhhhhhhccccccCC
Confidence            999999999877665433211000                          00000 11221110                


Q ss_pred             ---------------------CCCcccEEeeecCcCcceEEEecCCCCCCCCeeecCCCCChhhHHHHHHHHHHHHHHhc
Q 009873          366 ---------------------NASRMPIAAKLAFPISKGKLELDSTDPRQNPSIKFNYLAKEKDLHECVKMVQLLDKVTK  424 (523)
Q Consensus       366 ---------------------~~~~~~~~~~~~~p~s~g~v~l~~~d~~~~p~i~~~~~~~~~D~~~~~~~~~~~~~i~~  424 (523)
                                           ....+++...+++|.|||+|+|.++||++.|.|+++|+.++.|++.+.++++.++++++
T Consensus       385 ~pd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~P~SrG~V~L~s~dp~~~P~i~~~yl~~~~D~~~~~~~~~~~~~i~~  464 (566)
T 3fim_B          385 SAHWETIFSNQWFHPAIPRPDTGSFMSVTNALISPVARGDIKLATSNPFDKPLINPQYLSTEFDIFTMIQAVKSNLRFLS  464 (566)
T ss_dssp             SCSEEEEEESSCCCTTSCCCSSCCEEEEEEEESSCSCCBEEECSSSCTTSCCEEECCTTCSHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEecccchhhcccCCCCCCEEEEEEeecCCccceEEEecCCCCCCCceeccccCCCccHHHHHHHHHHHHHHHHh
Confidence                                 01123455677899999999999999999999999999999999999999999999999


Q ss_pred             ccccccccCCCCCC--CCCCCHHHHHHHHHcccccccccccceecc------cccCCCCcEeccCCcEEeeccccCCCCC
Q 009873          425 SQSVSSFLGIKPQE--KLMSNSDELRKLCKNNVRTFYHYHGGCIVG------SVVDKDYRVYGVKGLRVIDGSTFQESPG  496 (523)
Q Consensus       425 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~H~~Gt~~MG------~VvD~~~rv~g~~nL~V~D~Sv~P~~~~  496 (523)
                      ..+++.+...+..|  ....++++|++|+++...+.+|++|||+||      +|||+++||||++||||+|+||||++++
T Consensus       465 ~~~~~~~~~~~~~P~~~~~~sd~~~~~~ir~~~~t~~H~~GTc~Mg~~~~~~~VVD~~lrV~Gv~~LrVvDaSv~P~~~~  544 (566)
T 3fim_B          465 GQAWADFVIRPFDPRLRDPTDDAAIESYIRDNANTIFHPVGTASMSPRGASWGVVDPDLKVKGVDGLRIVDGSILPFAPN  544 (566)
T ss_dssp             SGGGTTTEEEESSGGGSCTTCHHHHHHHHHHHCEECSCCBCTTCBCCTTCSSCSBCTTCBBTTCBSEEECSGGGCCSCCS
T ss_pred             CcccCCccccccCCCcccccchHHHHHHHhhcccccccccCccccCCcccCCccCCCCCeEccCCCcEEcccccCCCCCC
Confidence            98888776555555  356789999999999999999999999998      7999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHHHHHH
Q 009873          497 TNPMATVMMLGRYQGVKLVEE  517 (523)
Q Consensus       497 ~nPtlTi~Ala~r~a~~i~~~  517 (523)
                      +||++|+||+|+|+||.|+++
T Consensus       545 ~n~~~~~~~iaekaAd~I~~~  565 (566)
T 3fim_B          545 AHTQGPIYLVGKQGADLIKAD  565 (566)
T ss_dssp             SCTHHHHHHHHHHHHHHHHHT
T ss_pred             cCcHHHHHHHHHHHHHHHhhc
Confidence            999999999999999999875

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=100.00  E-value=4.5e-75  Score=616.67  Aligned_cols=458  Identities=26%  Similarity=0.370  Sum_probs=352.4

Q ss_pred             ccccCCcccEEEECCCCchHHHHhhhhc--cCeeEEEecCCC-CCCCCCccccchhccccCC--CCCCccccccCcCCCc
Q 009873           47 KEVAGKSFDYIVVGGGTTGCPLAATLSD--NFSVLLVERGGS-PFGNPLVTDKRFFGFSLLQ--TDEYTSVAQSFISTDG  121 (523)
Q Consensus        47 ~~~~~~~~DvIIVGsG~aG~~~A~~Lae--g~~VlvlE~G~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  121 (523)
                      ....+.+|||||||||.+||++|.||+|  +.+|||||+|+. ...++.+..+..+...+..  .+.|.+.+|. ..++.
T Consensus        13 ~~~~~~~yDyIIVGgG~AG~vlA~RLse~~~~~VLlLEaG~~~~~~~~~~~~p~~~~~~~~~~~~w~~~t~~q~-~~~r~   91 (583)
T 3qvp_A           13 KDVSGRTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDIFGSSVDHAYETVELA-TNNQT   91 (583)
T ss_dssp             GGTTTCEEEEEEECCSHHHHHHHHHHTTSTTCCEEEECSSCCCTTSCHHHHBGGGTTTTTTSTTBCCEECCCCT-TTSCC
T ss_pred             hhcCCCCccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCCCCCCCCcceechhhHHhhcCCcccCCccccccC-CCCCe
Confidence            4455678999999999999999999998  589999999983 3334444445444433322  2356666664 46677


Q ss_pred             eeecCceecccccccCCccccCCChhhHhh------C-CCCHHHHHHHhHhhhcccc-----------------------
Q 009873          122 VQNHRGRVLGGSSAINGGFYSRAREDFVKK------A-GWDEELVKKAYEWVESKVV-----------------------  171 (523)
Q Consensus       122 ~~~~~g~~lGG~s~~~~~~~~r~~~~~~~~------~-~w~~~~~~~~~~~~~~~~~-----------------------  171 (523)
                      +.+.+|++|||+|++|+|++.|+.+.+++.      . +|.|+++.+||++.|+...                       
T Consensus        92 ~~~~rGk~LGGsS~iN~m~y~Rg~~~Dyd~W~~~g~~~gW~~~~~lpyf~k~E~~~~~~~~~~~~~~~~~~~~hG~~Gpl  171 (583)
T 3qvp_A           92 ALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWNWDNVAAYSLQAERARAPNAKQIAAGHYFNASCHGVNGTV  171 (583)
T ss_dssp             CEECCBCSTTGGGGTSCCBCCCCCHHHHHHHHHTSCCTTCSHHHHHHHHHHHEEECCCCHHHHHHTCCCCGGGSCSSSSE
T ss_pred             eeccCceecCCcCcccceEEEeCCHHHHHHHHHhCCCCCCChhHHHHHHHHHHhccCCcchhhcccccCCccccCCCCCE
Confidence            899999999999999999999998876653      3 8999999999999987631                       


Q ss_pred             ---CC---CCCChhHHHHHHHHHHcCCCCCCCCCcCCCCcceeeeeEEcCCCeeechHh-hhh-hCCCCCeEEEeccEEE
Q 009873          172 ---FP---PELTPWQSVVEFGLLEAGILPYNGYSLEHIEGTKIGGTAFDQCGKRHTSAD-LLE-AGNPKNLVVLLNATVN  243 (523)
Q Consensus       172 ---~~---p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~l~-~~~~~g~~i~~~~~V~  243 (523)
                         ..   ....++.+.+.++++++|++...++......|........++.|.|+++.. +|. ..+++|++|++++.|+
T Consensus       172 ~v~~~~~~~~~~~~~~~~~~a~~~~G~~~~~D~n~~~~~G~~~~~~t~~~~g~R~saa~ayL~p~~~r~NL~V~t~a~V~  251 (583)
T 3qvp_A          172 HAGPRDTGDDYSPIVKALMSAVEDRGVPTKKDFGCGDPHGVSMFPNTLHEDQVRSDAAREWLLPNYQRPNLQVLTGQYVG  251 (583)
T ss_dssp             EEBCCCCSSCBCTHHHHHHHHHHTTTCCBCCCTTSSCCCEEECCCBSBCTTCBBCCHHHHHTTTTTTCTTEEEECSCEEE
T ss_pred             EecCCCCcccCCHHHHHHHHHHHHcCCCcCCCCCCCCCceecccceeEcCCCcEecHHHHHHHHhhcCCCcEEEcCCEEE
Confidence               00   123567788889999999853322222222233222233345688887765 454 6678999999999999


Q ss_pred             EEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHhhCCCChhhhhhCCCCcee
Q 009873          244 NIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSGIGPHDHLKDLNIPTIV  323 (523)
Q Consensus       244 ~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~SGig~~~~l~~~gi~~~~  323 (523)
                      ||++++.+.  +.+|+||++.+.+|+   .++++|        +|+||||||+|+||+|||+||||++++|+++||+++.
T Consensus       252 rIl~d~~~~--~~ra~GV~~~~~~G~---~~~v~A--------~kEVILsAGa~~SPqLL~lSGIGp~~~L~~~GI~vv~  318 (583)
T 3qvp_A          252 KVLLSQNGT--TPRAVGVEFGTHKGN---THNVYA--------KHEVLLAAGSAVSPTILEYSGIGMKSILEPLGIDTVV  318 (583)
T ss_dssp             EEEEECSSS--SCEEEEEEEESSTTC---EEEEEE--------EEEEEECSCTTTHHHHHHHTTBSCHHHHGGGTCCCSB
T ss_pred             EEEeccCCC--CCEEEEEEEEecCCc---EEEEEE--------CCEEEEeCCccCCHHHHHHcCCCCHHHHHhCCCCcee
Confidence            999984200  019999999865788   788887        6799999999999999999999999999999999999


Q ss_pred             cCcccccccccCcCceEEEecCCCCCCC-------CCcce-------------------------eeeeec---------
Q 009873          324 DLQEVGEGMQDNPCIAKLVDTMPQKRLP-------EPPEV-------------------------VAGVLP---------  362 (523)
Q Consensus       324 ~~p~vG~~l~dh~~~~~~~~~~~~~~~~-------~~~~~-------------------------~g~~~~---------  362 (523)
                      ++| ||+||+||+...+.|.........       .....                         .+.|..         
T Consensus       319 dLP-VG~NLqDH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (583)
T 3qvp_A          319 DLP-VGLNLQDQTTATVRSRITSAGAGQGQAAWFATFNETFGDYSEKAHELLNTKLEQWAEEAVARGGFHNTTALLIQYE  397 (583)
T ss_dssp             CCC-TTCCBBCCEEEEEEEEECGGGCSBCEEEEEEEHHHHHGGGHHHHHHHHHHCHHHHHHHHHHTTSCSCHHHHHHHHH
T ss_pred             eCc-cccchhhCccceEEEEecCCccccccccccccHHHhhccchHHHHHHHHhhcchhhcccccccCccccHHHHhhhc
Confidence            999 999999999887776443210000       00000                         000000         


Q ss_pred             --------CCC--------CCCcccEEeeecCcCcceEEEecCCCCCCCCee-ecCCCCChhhHHHHHHHHHHHHHHhcc
Q 009873          363 --------ISS--------NASRMPIAAKLAFPISKGKLELDSTDPRQNPSI-KFNYLAKEKDLHECVKMVQLLDKVTKS  425 (523)
Q Consensus       363 --------~~~--------~~~~~~~~~~~~~p~s~g~v~l~~~d~~~~p~i-~~~~~~~~~D~~~~~~~~~~~~~i~~~  425 (523)
                              ...        ......+....+.|.|||+|+|+++||++.|.| +++|+.++.|++.+.++++.+++++++
T Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~SrG~v~l~s~dp~~~P~i~~~~yl~~~~D~~~~~~~~~~~~~i~~~  477 (583)
T 3qvp_A          398 NYRDWIVNHNVAYSELFLDTAGVASFDVWDLLPFTRGYVHILDKDPYLHHFAYDPQYFLNELDLLGQAAATQLARNISNS  477 (583)
T ss_dssp             HHHHHHHHSCCEEEEEEEECTTSEEEEEEESSCCCCBEEEESSSCGGGCCEEEECCTTCSHHHHHHHHHHHHHHHHHHTS
T ss_pred             cchhhhccCCCCcceeeeccCCCceeeeeecccCCceEEEecCCCCCCCcccccCCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence                    000        000112334457999999999999999999999 999999999999999999999999998


Q ss_pred             cccccccCCCCCCC----CCCCHHHHHHHHHcccccccccccceecc-----cccCCCCcEeccCCcEEeeccccCCCCC
Q 009873          426 QSVSSFLGIKPQEK----LMSNSDELRKLCKNNVRTFYHYHGGCIVG-----SVVDKDYRVYGVKGLRVIDGSTFQESPG  496 (523)
Q Consensus       426 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~H~~Gt~~MG-----~VvD~~~rv~g~~nL~V~D~Sv~P~~~~  496 (523)
                      .+++.+...+..|.    ...++++|++|++....+.+|++|||+||     +|||+++||||++||||+|+||||+.++
T Consensus       478 ~~~~~~~~~~~~pg~~~~~~~sd~~~~~~~r~~~~t~~H~~GTc~Mg~~~~~~VVD~~lrV~Gv~~LrVvDaSv~P~~~~  557 (583)
T 3qvp_A          478 GAMQTYFAGETIPGDNLAYDADLSAWTEYIPYHFRPNYHGVGTCSMMPKEMGGVVDNAARVYGVQGLRVIDGSIPPTQMS  557 (583)
T ss_dssp             TTHHHHEEEEEESGGGSCTTCCHHHHHHHGGGSCEECSCCBCTTCBSCGGGTCSBCTTCBBTTCBSEEECSTTCCSSCCS
T ss_pred             cchhhccccccCCCcccccCCCHHHHHHHHHhccCCCcCCCCceeCCCCCCCceECCCCeEecCCCeEEeecccCCCCCC
Confidence            88876654333332    23689999999999999999999999999     8999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHHHHHHHh
Q 009873          497 TNPMATVMMLGRYQGVKLVEERR  519 (523)
Q Consensus       497 ~nPtlTi~Ala~r~a~~i~~~~~  519 (523)
                      +||++|+||+|+|+||.|++++.
T Consensus       558 ~n~~~t~~aiaeraAd~I~~~~~  580 (583)
T 3qvp_A          558 SHVMTVFYAMALKISDAILEDYA  580 (583)
T ss_dssp             SCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCcHHHHHHHHHHHHHHHHHhhh
Confidence            99999999999999999988753

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=100.00  E-value=7.5e-72  Score=592.72  Aligned_cols=445  Identities=23%  Similarity=0.339  Sum_probs=338.7

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-c-CeeEEEecCCCC-CCCCCccccchhccccCCC--CCCccccccCcCCCcee--
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-N-FSVLLVERGGSP-FGNPLVTDKRFFGFSLLQT--DEYTSVAQSFISTDGVQ--  123 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g-~~VlvlE~G~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--  123 (523)
                      ..+|||||||||.+||++|.||+| + .+|||||+|+.. ...+.+..+..+.......  +.|.+.    ..++...  
T Consensus         4 ~~~yDyIVVGgG~AG~v~A~rLse~~~~~VLllEaG~~~~~~~~~i~~P~~~~~~~~~~~dW~y~t~----~~~r~~~~~   79 (577)
T 3q9t_A            4 GSHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIGNPEDIPEITTPSSAMDLRNSKYDWAYKTT----MVRRDDYER   79 (577)
T ss_dssp             TCEEEEEEESCSHHHHHHHHHHTTSTTSCEEEECSSCSCGGGCHHHHCGGGGGGGTTSTTBCCEEEE----EEEETTEEE
T ss_pred             CCcccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCCCCCCCCceEECchhhhhccCCCcccceEEE----ECCcccccc
Confidence            467999999999999999999999 5 799999999852 2223333333333222211  122222    2222333  


Q ss_pred             ----ecCceecccccccCCccccCCChhhHhh------CCCCHHHHHHHhHhhhccccCC--------------------
Q 009873          124 ----NHRGRVLGGSSAINGGFYSRAREDFVKK------AGWDEELVKKAYEWVESKVVFP--------------------  173 (523)
Q Consensus       124 ----~~~g~~lGG~s~~~~~~~~r~~~~~~~~------~~w~~~~~~~~~~~~~~~~~~~--------------------  173 (523)
                          +.+|++|||+|++|+|++.|+.+.+++.      .+|.++++.+||++.|+.....                    
T Consensus        80 ~~~~~~rGkvLGGsS~iN~m~~~rg~~~dyd~W~~~G~~gW~~~~~lpyf~k~e~~~~~~~~~~~~~~~hG~~Gpl~v~~  159 (577)
T 3q9t_A           80 IEKPNTRGKTLGGSSSLNYFTWVPGHKATFDQWEEFGGKEWTWDPLVPYLRKSATYHDDPRLYSPELEKIGGGGPIPISH  159 (577)
T ss_dssp             EEEEECCBCSTTGGGGTSCCEECCCCHHHHHTTHHHHCGGGSHHHHHHHHHHTEEEECTTCCSCGGGGGGCCSCSEEEEE
T ss_pred             ccccccccccccCccccCceEeccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCCccccCCccccCCCCCCEEeeC
Confidence                8899999999999999999998876654      4799999999999988754321                    


Q ss_pred             CC----CChhHHHHHHHHHHcCCCCCCCCCcCCCCcceeeeeEEcCCCeeechHhhhhhCCCCCeEEEeccEEEEEEEcC
Q 009873          174 PE----LTPWQSVVEFGLLEAGILPYNGYSLEHIEGTKIGGTAFDQCGKRHTSADLLEAGNPKNLVVLLNATVNNIIFSN  249 (523)
Q Consensus       174 p~----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~g~~i~~~~~V~~l~~~~  249 (523)
                      +.    ..++...+.+++.+.|++...+.......|....... ...|.|+++..+  ...++|++|++++.|++|++++
T Consensus       160 ~~~~~~~~~~~~~~~~a~~~~G~~~~~d~n~~~~~G~~~~~~~-~~~g~R~s~~~~--l~~r~Nl~v~~~a~v~ri~~~~  236 (577)
T 3q9t_A          160 AELIDEMAPFRENLTKAWKSMGQPLIENIYDGEMDGLTHCCDT-IYRGQRSGSFLF--VKNKPNITIVPEVHSKRLIINE  236 (577)
T ss_dssp             CCCCGGGHHHHHHHHHHHHHTTCCBCSCCSSSCCCEEEECEES-EETTEECCGGGG--SSSCTTEEEECSEEEEEEEEET
T ss_pred             CCCCcccchHHHHHHHHHHHcCCCcCCCCCCCCcCeEEeecce-ecCCeEeeHHHH--HhcCCCeEEEcCcEEEEEEEeC
Confidence            01    1235667788889999853222211122222211111 135777765433  3568899999999999999985


Q ss_pred             CCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHhhCCCChhhhhhCCCCceecCcccc
Q 009873          250 NGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSGIGPHDHLKDLNIPTIVDLQEVG  329 (523)
Q Consensus       250 ~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~SGig~~~~l~~~gi~~~~~~p~vG  329 (523)
                      .++    +++||++.+.+|+   .+++++        +|+||||||+|+||+|||+|||||+++|+++||+++.++|+||
T Consensus       237 ~~~----~a~GV~~~~~~g~---~~~v~A--------~keVILsaGa~~sp~lL~~SGIGp~~~L~~~GI~vv~dlP~VG  301 (577)
T 3q9t_A          237 ADR----TCKGVTVVTAAGN---ELNFFA--------DREVILSQGVFETPKLLMLSGIGPTRELSRHGINTIVDSRHVG  301 (577)
T ss_dssp             TTT----EEEEEEEEETTSC---EEEEEE--------EEEEEECSHHHHHHHHHHHTTEECHHHHHTTTCCCSEECTTTT
T ss_pred             CCC----EEEEEEEEeCCCc---EEEEEe--------eeEEEEcccccCChHHHHHcCCCCHHHHHHcCCCeeccCchhh
Confidence            322    9999999986687   788887        7899999999999999999999999999999999999999999


Q ss_pred             cccccCcCceEEEecCCCCCC---------------------------CCCcceeeeee---------------------
Q 009873          330 EGMQDNPCIAKLVDTMPQKRL---------------------------PEPPEVVAGVL---------------------  361 (523)
Q Consensus       330 ~~l~dh~~~~~~~~~~~~~~~---------------------------~~~~~~~g~~~---------------------  361 (523)
                      +||+||+.+.+.|........                           ....+..+ |.                     
T Consensus       302 ~nl~DH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~Gpl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  380 (577)
T 3q9t_A          302 QNLMDHPGVPFVLRVKDGFGMDDVLLRHGPKRDAVVSAYNKNRSGPVGSGLLELVG-FPRIDKYLEKDAEYRKAKAANGG  380 (577)
T ss_dssp             EEEBCCEEEEEEEEECTTSSSHHHHTSCSHHHHHHHHHHHHHSCSGGGCCSEEEEE-ECCCHHHHTTCHHHHHHHHHTTT
T ss_pred             hhhhcCcceeEEEEeCCCCccchhhhcchhHHHHHHHHHHhcCCCCcccchhheeE-EeecChhhhcchhhhhhhhcccc
Confidence            999999988777644321100                           00000001 11                     


Q ss_pred             -----------------cCC-----------CCCCcccEEeeecCcCcce-EEEecCCCCCCCCeeecCCCCChhhHHHH
Q 009873          362 -----------------PIS-----------SNASRMPIAAKLAFPISKG-KLELDSTDPRQNPSIKFNYLAKEKDLHEC  412 (523)
Q Consensus       362 -----------------~~~-----------~~~~~~~~~~~~~~p~s~g-~v~l~~~d~~~~p~i~~~~~~~~~D~~~~  412 (523)
                                       +..           .....+++...+++|.||| +|+|.++||.+.|.|+++|+.+|.|++.+
T Consensus       381 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~P~SrGG~V~L~S~dp~~~P~i~p~yl~~~~D~~~~  460 (577)
T 3q9t_A          381 KDPFSPLGQPHFELDFVCMFGTAFQWHFPTPKTGDHLTVVVDLVRPISDPGEVTLNSADPFQQPNINLNFFANDLDIIAM  460 (577)
T ss_dssp             SCSSCTTSCCSEEEEEESSCCGGGCSSSCCCSSSEEEEEEEEESSCCSCCEEEECSCSCTTSCCEEECCTTCSHHHHHHH
T ss_pred             ccccCCCCCceEEEEecccccccccccccCCCCCCEEEEEEEeeeccccCCEEEeCCCCCCCCceEecCcCCCccHHHHH
Confidence                             000           0001234556778999999 99999999999999999999999999999


Q ss_pred             HHHHHHHHHHh-cccccccccCCCCCCC-CCCCHHHHHHHHHcccccccccccceecc-----cccCCCCcEeccCCcEE
Q 009873          413 VKMVQLLDKVT-KSQSVSSFLGIKPQEK-LMSNSDELRKLCKNNVRTFYHYHGGCIVG-----SVVDKDYRVYGVKGLRV  485 (523)
Q Consensus       413 ~~~~~~~~~i~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~H~~Gt~~MG-----~VvD~~~rv~g~~nL~V  485 (523)
                      .++++.+++++ +..++..+...+..|+ ...++++|++|+++...+.+|++|||+||     +|||+++||||++||||
T Consensus       461 ~~~~~~~~~i~~~~~~~~~~~~~e~~p~~~~~sd~~~~~~ir~~~~t~~H~~GTc~Mg~~~~~~VVD~~lrV~Gv~~LrV  540 (577)
T 3q9t_A          461 REGIRFSYDLLFKGEGFKDLVESEYPWEMPLDSDKEMHRAVLDRCQTAFHPTGTARLSKNIDQGVVDPKLKVHGIKKLRV  540 (577)
T ss_dssp             HHHHHHHHHHHHHSTTGGGTEEEEESSCCCTTCHHHHHHHHHHHCEECSCCBCTTCBCSSTTTCSBCTTCBBTTCBSEEE
T ss_pred             HHHHHHHHHHHHhChhhhhccccccCCCCCcCCHHHHHHHHHhccccccccccceecCCCCCCceECCCCeEeCCCCcEE
Confidence            99999999999 8888887765554443 45789999999999999999999999999     69999999999999999


Q ss_pred             eeccccCCCCCCCcHHHHHHHHHHHHHHHHHHH
Q 009873          486 IDGSTFQESPGTNPMATVMMLGRYQGVKLVEER  518 (523)
Q Consensus       486 ~D~Sv~P~~~~~nPtlTi~Ala~r~a~~i~~~~  518 (523)
                      +|+||||+.+++||++|+||+|+|+||.|++++
T Consensus       541 vDaSv~P~~~~~n~~a~~~~iaekaAd~I~~~~  573 (577)
T 3q9t_A          541 ADASVIPIIPDCRIQNSVYAVGEKCADMIKAEH  573 (577)
T ss_dssp             CSGGGCSSCCSSCCHHHHHHHHHHHHHHHHHHC
T ss_pred             eecccccCCCCCccHHHHHHHHHHHHHHHHhhh
Confidence            999999999999999999999999999998764

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=100.00  E-value=4.9e-70  Score=580.80  Aligned_cols=445  Identities=23%  Similarity=0.337  Sum_probs=346.3

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc--cCeeEEEecCCCCCCCCCccccchhccccCC--CCCCccccccCcCCCceeecC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD--NFSVLLVERGGSPFGNPLVTDKRFFGFSLLQ--TDEYTSVAQSFISTDGVQNHR  126 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae--g~~VlvlE~G~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  126 (523)
                      ..+|||||||||++|+++|.||+|  ++||||||+|+... ++....+..+......  ...|.+.+|....++.+.+.+
T Consensus        15 ~~~yD~IIVGsG~aG~v~A~rLse~~~~~VLvLEaG~~~~-~~~~~~p~~~~~~~~~~~dw~~~t~p~~~~~~~~~~~~r   93 (526)
T 3t37_A           15 APNCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEEPT-DPDIWNPAAWPALQGRSYDWDYRTEAQAGTAGRAHHWAR   93 (526)
T ss_dssp             --CEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSBCCC-CGGGGSGGGGGGTTTSTTBCCEECCCBGGGTTBCCEECC
T ss_pred             CCCeeEEEECccHHHHHHHHHHHhCCCCeEEEEcCCCCCC-CcchhChhhHhhccCCccccCccccccCCCCCCeEeccC
Confidence            348999999999999999999998  58999999997532 2333333333322211  235677788888888899999


Q ss_pred             ceecccccccCCccccCCChhhHhh-------CCCCHHHHHHHhHhhhccccCC----------------CCCChhHHHH
Q 009873          127 GRVLGGSSAINGGFYSRAREDFVKK-------AGWDEELVKKAYEWVESKVVFP----------------PELTPWQSVV  183 (523)
Q Consensus       127 g~~lGG~s~~~~~~~~r~~~~~~~~-------~~w~~~~~~~~~~~~~~~~~~~----------------p~~~~~~~~~  183 (523)
                      |++|||+|++|++++.|+.+.+++.       ++|+++++.+||++.|+.....                ....++.+.+
T Consensus        94 G~~lGGsS~in~~~~~R~~~~Dfd~w~~~~~~~~w~~~~~~pyf~~~E~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~  173 (526)
T 3t37_A           94 GRLIGGSSCLHAMGYMRGHPSDFQAWVDASGDRRWGWDELLPVFQAIEDHPLGGDGIHGKGGPLPIHLPADEVSPLARAF  173 (526)
T ss_dssp             BCBTTGGGGTSCCBCCCCCHHHHHHHHHHHSCGGGSHHHHHHHHHHHEECTTTTSSSSCSSCSEECBCCSTTSCHHHHHH
T ss_pred             ccEECcHHHHhhCEEecCCHHHHHHHHHhcCCCCCChhhhhhhhhhhhhccCCCccccCcCCCcCcccccccCCHHHHHH
Confidence            9999999999999999998766642       4699999999999998764321                1345677888


Q ss_pred             HHHHHHcCCCCCCCCCcCCCCcceeeeeEEcCCCeeechHhh-h-h-hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeE
Q 009873          184 EFGLLEAGILPYNGYSLEHIEGTKIGGTAFDQCGKRHTSADL-L-E-AGNPKNLVVLLNATVNNIIFSNNGKANESRAHG  260 (523)
Q Consensus       184 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-l-~-~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~G  260 (523)
                      .++..+.|+............++... ...+..|.+.+.... + + ...++|++|++++.|++|+++++      +++|
T Consensus       174 ~~~~~~~G~~~~~~~~~~~~~~~~~~-~~~~~~g~r~s~~~~~~~~~~~~r~nl~v~~~~~v~~i~~~~~------~a~g  246 (526)
T 3t37_A          174 IEAGASLGLPRLEGHNSGEMIGVTPN-SLNIRDGRRVTAADAWLTKAVRGRKNLTILTGSRVRRLKLEGN------QVRS  246 (526)
T ss_dssp             HHHHHHTTCCBCSSSCSSCCBSBCCC-CBCEETTEECCHHHHHSCHHHHTCTTEEEECSCEEEEEEEETT------EEEE
T ss_pred             HHHHHHcCCCcccCCCCCcccccccc-cccccCCcccccccccccccccCCCCeEEEeCCEEEEEEecCC------eEEE
Confidence            89999999854332222111121111 112235666665543 3 3 45689999999999999999987      9999


Q ss_pred             EEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHhhCCCChhhhhhCCCCceecCcccccccccCcCceE
Q 009873          261 IRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSGIGPHDHLKDLNIPTIVDLQEVGEGMQDNPCIAK  340 (523)
Q Consensus       261 V~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~SGig~~~~l~~~gi~~~~~~p~vG~~l~dh~~~~~  340 (523)
                      |++.+. ++   ..++.+         +.||||||+|+||+|||+||||+.++|.++||+++.++|.||+||+||+....
T Consensus       247 v~~~~~-~~---~~~~~a---------~~VILsAGai~SP~LLl~SGig~~~~l~~~gi~vv~dlp~VG~nl~DH~~~~~  313 (526)
T 3t37_A          247 LEVVGR-QG---SAEVFA---------DQIVLCAGALESPALLMRSGIGPHDVLDAAGVGCLIDMPDIGRNLQDHLLGAG  313 (526)
T ss_dssp             EEEEET-TE---EEEEEE---------EEEEECSHHHHHHHHHHHTTEECHHHHHHHTCCCSEECTTTTCSBBCCEEEEE
T ss_pred             EEEEec-Cc---eEEEee---------cceEEcccccCCcchhhhccCCchhhhhccCCCeEecCCccccccccccccce
Confidence            999884 44   566776         99999999999999999999999999999999999999999999999987554


Q ss_pred             EEecCCCCCCCCCc---cee------------------eeee-cC-------CCCCCcccEEeeecCcCcceEEEecCCC
Q 009873          341 LVDTMPQKRLPEPP---EVV------------------AGVL-PI-------SSNASRMPIAAKLAFPISKGKLELDSTD  391 (523)
Q Consensus       341 ~~~~~~~~~~~~~~---~~~------------------g~~~-~~-------~~~~~~~~~~~~~~~p~s~g~v~l~~~d  391 (523)
                      .+.....+......   ...                  +... +.       ......+.+...+.+|.|+|+|++++.|
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~srG~v~~~s~d  393 (526)
T 3t37_A          314 NLYAARKPVPPSRLQHSESMAYMRADSFTAAGQPEIVVGCGVAPIVSESFPAPAAGSAYSLLFGITHPTSRGSVRISGPE  393 (526)
T ss_dssp             EEEEESSCCCCCSSCSEEEEEEECSSCSSCCSSCCEEEEEESSCCCCTTSCCCCTTSEEEEEEEESSCCCCBEEECSSSS
T ss_pred             eEEeccCCcchHhhcchhhhhhhhcccccccCCcceeeecccccccccccccccCCcceeeeccccCccccCcceeccCC
Confidence            43222222211100   000                  0000 00       0011123456778899999999999999


Q ss_pred             CCCCCeeecCCCCChhhHHHHHHHHHHHHHHhcccccccccCCCCCCCCCCCHHHHHHHHHcccccccccccceecc---
Q 009873          392 PRQNPSIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSFLGIKPQEKLMSNSDELRKLCKNNVRTFYHYHGGCIVG---  468 (523)
Q Consensus       392 ~~~~p~i~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gt~~MG---  468 (523)
                      +.+.|.|+++|+.++.|.+.+.++++.+++++.+..+..+...+..|....+++++++|++....+.+|++||||||   
T Consensus       394 p~~~p~i~~~~~~~~~d~~~~~~~~~~~r~i~~~~~~~~~~~~~~~pg~~~~~~~~~~~ir~~~~t~~H~~GTcrMG~d~  473 (526)
T 3t37_A          394 LGDRLIIDPAYLQTGRDRERFRRALEASRTIGHRDELAGWRERELLPGTPNSAAEMDDFIARSVITHHHPCGTCRMGKDP  473 (526)
T ss_dssp             TTSCCEEECCTTCSHHHHHHHHHHHHHHHHHHTCGGGTTTEEEECSSCCCCSHHHHHHHHHHHEEECSCCBCTTCBCSST
T ss_pred             CccCceeccccCCCHHHHHHHHHHHHHHHHHHcChhhhhccccccCCCCCCCHHHHHHHHHhcCccCcccCccccCCCCC
Confidence            99999999999999999999999999999999998888777666677777889999999999999999999999999   


Q ss_pred             -cccCCCCcEeccCCcEEeeccccCCCCCCCcHHHHHHHHHHHHHHHHH
Q 009873          469 -SVVDKDYRVYGVKGLRVIDGSTFQESPGTNPMATVMMLGRYQGVKLVE  516 (523)
Q Consensus       469 -~VvD~~~rv~g~~nL~V~D~Sv~P~~~~~nPtlTi~Ala~r~a~~i~~  516 (523)
                       +|||++|||||++||||||+||||+++++||++|+||||||+||+.-.
T Consensus       474 ~sVVD~~~rV~Gv~nL~VvDaSv~P~~~~~np~~ti~aiAEkaAd~~~~  522 (526)
T 3t37_A          474 DAVVDANLRLKALDNLFVVDASIMPNLTAGPIHAAVLAIAETFARQYHH  522 (526)
T ss_dssp             TCSBCTTCBBTTCSSEEECSGGGCSSCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred             CccCCCCCEEcCCCCeEEEEcCcccCCcChHHHHHHHHHHHHHHHHhhc
Confidence             799999999999999999999999999999999999999999998643

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=100.00  E-value=7.5e-70  Score=581.96  Aligned_cols=455  Identities=22%  Similarity=0.324  Sum_probs=348.0

Q ss_pred             ccCCcccEEEECCCCchHHHHhhhhc--cCeeEEEecCCCCCCCCCcc-ccchhccccCC--CCCCccccccCcCCCcee
Q 009873           49 VAGKSFDYIVVGGGTTGCPLAATLSD--NFSVLLVERGGSPFGNPLVT-DKRFFGFSLLQ--TDEYTSVAQSFISTDGVQ  123 (523)
Q Consensus        49 ~~~~~~DvIIVGsG~aG~~~A~~Lae--g~~VlvlE~G~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  123 (523)
                      +...+|||||||+|.+|+++|.+|++  +.+|+|||+|.....++... .+..+...+..  .+.|.+.+  ...++.+.
T Consensus        20 ~~~~~~d~iivG~G~~g~~~a~~l~~~~~~~v~~~e~g~~~~~~~~~~~~p~~~~~~~~~~~~w~~~t~p--~~~~~~~~   97 (587)
T 1gpe_A           20 VAGKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPNAYGQIFGTTVDQNYLTVP--LINNRTNN   97 (587)
T ss_dssp             TTTCEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCCTTSCHHHHCGGGTTTTTTSTTBCCEECCC--CTTSCCCE
T ss_pred             cCcccCCEEEECcCHHHHHHHHHHHhCCCCcEEEEecCCccCCCcccccChhhHhhccCCcccccccccc--CCCCceee
Confidence            33568999999999999999999998  69999999998554333333 33333222211  12233333  34566788


Q ss_pred             ecCceecccccccCCccccCCChhhHhh-------CCCCHHHHHHHhHhhhccccC-----------C--------C---
Q 009873          124 NHRGRVLGGSSAINGGFYSRAREDFVKK-------AGWDEELVKKAYEWVESKVVF-----------P--------P---  174 (523)
Q Consensus       124 ~~~g~~lGG~s~~~~~~~~r~~~~~~~~-------~~w~~~~~~~~~~~~~~~~~~-----------~--------p---  174 (523)
                      +.+|++|||+|++|+|++.|+.+.+++.       .+|+++++.+||+++|+....           .        |   
T Consensus        98 ~~rGk~lGGsS~in~~~~~R~~~~D~d~W~~~~G~~gW~~~~l~pyf~k~E~~~~~~~~~~~~G~~~~~~~~g~~Gpl~v  177 (587)
T 1gpe_A           98 IKAGKGLGGSTLINGDSWTRPDKVQIDSWEKVFGMEGWNWDNMFEYMKKAEAARTPTAAQLAAGHSFNATCHGTNGTVQS  177 (587)
T ss_dssp             ECCBCSTTGGGGTSCCEECCCCHHHHHHHHHTTCCTTCSHHHHHHHHHHTEEECCCCHHHHHHTCCCCGGGCCBSSSEEE
T ss_pred             eeccccccccccccceEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhcccCCcccccccccccCccccCCCCCEEE
Confidence            9999999999999999999998866653       369999999999999987642           1        1   


Q ss_pred             -------CCChhHHHHHHHHHHcCCCCCCCCCcCCCCcceeeeeEEcCCCeeechHh-hhh-hCCCCCeEEEeccEEEEE
Q 009873          175 -------ELTPWQSVVEFGLLEAGILPYNGYSLEHIEGTKIGGTAFDQCGKRHTSAD-LLE-AGNPKNLVVLLNATVNNI  245 (523)
Q Consensus       175 -------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~l~-~~~~~g~~i~~~~~V~~l  245 (523)
                             ...+..+.+.++++++|++...+.......|+....+..+..|.|+++.. ++. .++++|++|++++.|++|
T Consensus       178 ~~~~~~~~~~~~~~~~~~a~~~~G~~~~~d~n~~~~~G~~~~~~~~~~~g~R~sa~~~~l~~~~~~~nl~i~~~~~v~~l  257 (587)
T 1gpe_A          178 GARDNGQPWSPIMKALMNTVSALGVPVQQDFLCGHPRGVSMIMNNLDENQVRVDAARAWLLPNYQRSNLEILTGQMVGKV  257 (587)
T ss_dssp             BCCCCSSCBCTHHHHHHHHHHHTTCCBSCCTTSSCCCEEECCEESBCTTCCBCCHHHHHTTTTTTCTTEEEEESCEEEEE
T ss_pred             ccCCCcCCCCHHHHHHHHHHHHcCCCcCCCCCCCCCCEEEecceEECCCCcccCHHHHHHHHhhcCCCcEEEcCCEEEEE
Confidence                   23566788999999999865433322222333222222345688888765 454 667899999999999999


Q ss_pred             EEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHhhCCCChhhhhhCCCCceecC
Q 009873          246 IFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSGIGPHDHLKDLNIPTIVDL  325 (523)
Q Consensus       246 ~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~SGig~~~~l~~~gi~~~~~~  325 (523)
                      +++++++  +.+|+||++.+.+|+   .+++.+        +|.||||||+++||+||++||||++++|+++||+++.++
T Consensus       258 ~~~~~~~--~~~~~GV~~~~~~g~---~~~v~A--------~k~VILaaG~~~sp~lL~~SGIGp~~~L~~~gI~vv~dl  324 (587)
T 1gpe_A          258 LFKQTAS--GPQAVGVNFGTNKAV---NFDVFA--------KHEVLLAAGSAISPLILEYSGIGLKSVLDQANVTQLLDL  324 (587)
T ss_dssp             EEEEETT--EEEEEEEEEEEETTE---EEEEEE--------EEEEEECSCTTTHHHHHHHTTEECHHHHHHTTCCCSEEC
T ss_pred             EECCCCC--CCEEEEEEEEeCCCc---EEEEEe--------cccEEEccCCCCCHHHHHhCCCCCHHHHHhCCCCeEEeC
Confidence            9985310  018999999865677   777876        699999999999999999999999999999999999999


Q ss_pred             cccccccccCcCceEEEecCCCCCCCCCcce------------eee----------eecCC------CC-----------
Q 009873          326 QEVGEGMQDNPCIAKLVDTMPQKRLPEPPEV------------VAG----------VLPIS------SN-----------  366 (523)
Q Consensus       326 p~vG~~l~dh~~~~~~~~~~~~~~~~~~~~~------------~g~----------~~~~~------~~-----------  366 (523)
                      | ||+||+||+...+.+..............            .|.          |....      ..           
T Consensus       325 P-VG~nL~DH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (587)
T 1gpe_A          325 P-VGINMQDQTTTTVSSRASSAGAGQGQAVFFANFTETFGDYAPQARDLLNTKLDQWAEETVARGGFHNVTALKVQYENY  403 (587)
T ss_dssp             C-TTCSBBCCEEEEEEEEECGGGCSBCEEEEEEEHHHHHGGGHHHHHHHHHHSHHHHHHHHHHTTSCSCHHHHHHHHHHH
T ss_pred             C-CCcchhcCcccceEEEeCCCcccccchHHHHHHHHHHHhCCCCCccccccceeeEeecccccccccccccccccHHHH
Confidence            9 99999999988777544321110000000            000          11000      00           


Q ss_pred             ------------------CCcccEEeeecCcCcceEEEecCCCCCCCC-eeecCCCCChhhHHHHHHHHHHHHHHhcccc
Q 009873          367 ------------------ASRMPIAAKLAFPISKGKLELDSTDPRQNP-SIKFNYLAKEKDLHECVKMVQLLDKVTKSQS  427 (523)
Q Consensus       367 ------------------~~~~~~~~~~~~p~s~g~v~l~~~d~~~~p-~i~~~~~~~~~D~~~~~~~~~~~~~i~~~~~  427 (523)
                                        ...+.+...+++|.|||+|+|+++|+++.| .|+++|+.++.|++.+.++++.+++++++.+
T Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~srG~V~L~s~dp~~~P~~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~  483 (587)
T 1gpe_A          404 RNWLLDEDVAFAELFMDTEGKINFDLWDLIPFTRGSVHILSSDPYLWQFANDPKFFLNEFDLLGQAAASKLARDLTSQGA  483 (587)
T ss_dssp             HHHHHHSCCEEEEEEEECTTEEEEEEEESSCCCCBEEEESSSCGGGTCEEEECCTTSSHHHHHHHHHHHHHHHHHHTSTT
T ss_pred             hhhccCCCCcceeeeecCCCcEEEEEEecCCccceeEEeCCCCcccCccEeecccCCChHHHHHHHHHHHHHHHHHcCcc
Confidence                              001234556679999999999999999999 9999999999999999999999999999988


Q ss_pred             cccccCCCCCCC----CCCCHHHHHHHHHcccccccccccceecc-----cccCCCCcEeccCCcEEeeccccCCCCCCC
Q 009873          428 VSSFLGIKPQEK----LMSNSDELRKLCKNNVRTFYHYHGGCIVG-----SVVDKDYRVYGVKGLRVIDGSTFQESPGTN  498 (523)
Q Consensus       428 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~H~~Gt~~MG-----~VvD~~~rv~g~~nL~V~D~Sv~P~~~~~n  498 (523)
                      +..+...+..|.    ...++++|++|++....+.+|++|||+||     +|||++|||||++||||+|+||||+++++|
T Consensus       484 ~~~~~~~~~~pg~~~~~~~sd~~~~~~ir~~~~t~~H~~GTcrMG~~~~~sVVD~~lrV~Gv~nLrVvDaSv~P~~~~~N  563 (587)
T 1gpe_A          484 MKEYFAGETLPGYNLVQNATLSQWSDYVLQNFRPNWHAVSSCSMMSRELGGVVDATAKVYGTQGLRVIDGSIPPTQVSSH  563 (587)
T ss_dssp             HHHHEEEEEESGGGSCTTCCHHHHHHHHHHSCEECSCCBCTTCBSCGGGTCSBCTTCBBTTCBSEEECSTTCCSSCCSSC
T ss_pred             hhhhcccccCCCccccCCCCHHHHHHHHHHhcCcccCccCccccCCCCCCceECCCCEEECCCCcEEeeeccCCCCCCcc
Confidence            877653332232    12688999999999999999999999999     599999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHHHHHHHHh
Q 009873          499 PMATVMMLGRYQGVKLVEERR  519 (523)
Q Consensus       499 PtlTi~Ala~r~a~~i~~~~~  519 (523)
                      |++|+||||+|+||.|+++..
T Consensus       564 p~~ti~aiAeraAd~I~~~~~  584 (587)
T 1gpe_A          564 VMTIFYGMALKVADAILDDYA  584 (587)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHhhhh
Confidence            999999999999999998763

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=100.00  E-value=4.7e-68  Score=564.30  Aligned_cols=449  Identities=27%  Similarity=0.392  Sum_probs=343.2

Q ss_pred             cCCcccEEEECCCCchHHHHhhhhc--cCeeEEEecCCCCCCCCCccccchhccccC--CCCCCccccccCcCCCceeec
Q 009873           50 AGKSFDYIVVGGGTTGCPLAATLSD--NFSVLLVERGGSPFGNPLVTDKRFFGFSLL--QTDEYTSVAQSFISTDGVQNH  125 (523)
Q Consensus        50 ~~~~~DvIIVGsG~aG~~~A~~Lae--g~~VlvlE~G~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  125 (523)
                      ...+|||||||+|.+|+++|.+|++  +.+|+|||+|......+....+..+...+.  ..+.|.+.++.. ..+.+.+.
T Consensus        10 ~~~~~d~~ivG~G~~G~~~a~~l~~~~~~~v~~~e~g~~~~~~~~~~~p~~~~~~~~~~~~w~~~~~p~~~-~~~~~~~~   88 (546)
T 2jbv_A           10 SDREFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDWDYPIEPQEN-GNSFMRHA   88 (546)
T ss_dssp             CCCEEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSCCCTTCHHHHBGGGGGGGTTSTTBCCEEBCCCSS-SCTTCEEC
T ss_pred             ccCcCCEEEECcCHHHHHHHHHHHhCCCCCEEEEecCCcCCCCccccChhhHHhhcCCcccccccccccCC-CCceEEee
Confidence            3467999999999999999999998  589999999975432122222222322221  122455566666 56778899


Q ss_pred             CceecccccccCCccccCCChhhHhh-------CCCCHHHHHHHhHhhhcccc------C-----------CCCCChhHH
Q 009873          126 RGRVLGGSSAINGGFYSRAREDFVKK-------AGWDEELVKKAYEWVESKVV------F-----------PPELTPWQS  181 (523)
Q Consensus       126 ~g~~lGG~s~~~~~~~~r~~~~~~~~-------~~w~~~~~~~~~~~~~~~~~------~-----------~p~~~~~~~  181 (523)
                      +|++|||+|.+|++.+.|+.+.+++.       .+|.++++.+||+++|+...      +           .+...+..+
T Consensus        89 rGk~lGGsS~in~~~~~R~~~~d~d~w~~~~G~~gW~~~~l~pyf~k~e~~~~~~~~~~~~g~~Gpl~v~~~~~~~~~~~  168 (546)
T 2jbv_A           89 RAKVMGGCSSHNSCIAFWAPREDLDEWEAKYGATGWNAEAAWPLYKRLETNEDAGPDAPHHGDSGPVHLMNVPPKDPTGV  168 (546)
T ss_dssp             CBCSTTGGGGTSCCBCCCCCHHHHHHHHHTTCCTTCSHHHHHHHHHHHEEETTCBTTBTTSCBSCSEEEEECCSCCHHHH
T ss_pred             cccccccCccccceEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhccCCCCccccCCCCCCEEEecCCCCCHHHH
Confidence            99999999999999999998755532       36999999999999998654      1           113456778


Q ss_pred             HHHHHHHHcCCCCCCCCCcCC--CCcceeeeeEEcC-CCeeechHhh-hh-hCCCCCeEEEeccEEEEEEEcCCCCCCCc
Q 009873          182 VVEFGLLEAGILPYNGYSLEH--IEGTKIGGTAFDQ-CGKRHTSADL-LE-AGNPKNLVVLLNATVNNIIFSNNGKANES  256 (523)
Q Consensus       182 ~~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~-~g~~~~~~~~-l~-~~~~~g~~i~~~~~V~~l~~~~~g~~~~~  256 (523)
                      .+.++++++|++.. +.....  ..++..... .+. .|.|+++... +. +.++.|++|++++.|++|++++++     
T Consensus       169 ~~~~a~~~~G~~~~-d~n~~~~~~~g~~~~~~-~~~~~g~R~s~~~a~l~~a~~~~~~~i~~~~~V~~i~~~~~~-----  241 (546)
T 2jbv_A          169 ALLDACEQAGIPRA-KFNTGTTVVNGANFFQI-NRRADGTRSSSSVSYIHPIVEQENFTLLTGLRARQLVFDADR-----  241 (546)
T ss_dssp             HHHHHHHHTTCCBC-CSSSSSCCSSEEEECEE-CBCTTSBBCCHHHHHTGGGTTCTTEEEECSCEEEEEEECTTS-----
T ss_pred             HHHHHHHHCCCCcc-CCCCCCcCcceEEeeee-ecCCCCeEcCHHHHHHHHHhcCCCcEEEeCCEEEEEEECCCC-----
Confidence            88899999998644 322111  222211111 134 7888876554 55 445789999999999999998732     


Q ss_pred             eeeEEEEEecC-CCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHhhCCCChhhhhhCCCCceecCcccccccccC
Q 009873          257 RAHGIRFIKSD-GSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSGIGPHDHLKDLNIPTIVDLQEVGEGMQDN  335 (523)
Q Consensus       257 ~v~GV~~~~~~-g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~SGig~~~~l~~~gi~~~~~~p~vG~~l~dh  335 (523)
                      +++||++.+.. |+   .+++.+        +|.||||||+++||+||++||||+.++|+++||+++.++|+||+||+||
T Consensus       242 ~~~GV~~~~~~~g~---~~~i~A--------~k~VIlaaG~~~sp~lL~~SGiG~~~~L~~~gi~~~~dlP~VG~nL~dH  310 (546)
T 2jbv_A          242 RCTGVDIVDSAFGH---THRLTA--------RNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVGEHLQDH  310 (546)
T ss_dssp             BEEEEEEESSTTSC---EEEEEE--------EEEEEECSHHHHHHHHHHHTTEECHHHHHHTTCCCSEECTTTTCSBBCC
T ss_pred             eEEEEEEEECCCCc---EEEEEe--------CccEEEecCccCCchhhhhcCCCchHHHHhcCCceEeeCcchhhhhhhC
Confidence            89999998632 66   678887        4599999999999999999999999999999999999999999999999


Q ss_pred             cCceEEEecCCCCCCC---CCcceee--------------e-eecCCC-------C----CCcccEEeeecCcCcceEEE
Q 009873          336 PCIAKLVDTMPQKRLP---EPPEVVA--------------G-VLPISS-------N----ASRMPIAAKLAFPISKGKLE  386 (523)
Q Consensus       336 ~~~~~~~~~~~~~~~~---~~~~~~g--------------~-~~~~~~-------~----~~~~~~~~~~~~p~s~g~v~  386 (523)
                      +...+.+..... ...   ......+              + +.+...       +    ...+.+...+..|.|+|+|+
T Consensus       311 ~~~~~~~~~~~~-~~~~~~~~~~~~~f~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~P~srG~V~  389 (546)
T 2jbv_A          311 PEGVVQFEAKQP-MVAESTQWWEIGIFTPTEDGLDRPDLMMHYGSVPFDMNTLRHGYPTTENGFSLTPNVTHARSRGTVR  389 (546)
T ss_dssp             EECCEEEEESSC-CCSCCSSSCCEEEEECSSTTCSSCSEEEEEESSCCCTTTGGGTCCCCSSEEEEEEEETTCCCCBEEE
T ss_pred             ccceEEEEecCC-CcccccchhheEEEEecCCCCCCCceEEEeccccccccccccCccCCCCeEEEEEEEcccCcccEEE
Confidence            988776544321 111   0000000              1 111111       1    11234556778999999999


Q ss_pred             ecCCCCCCCCeeecCCCCChh--hHHHHHHHHHHHHHHhcccccccccCCCCCCC-CCCCHHHHHHHHHccccccccccc
Q 009873          387 LDSTDPRQNPSIKFNYLAKEK--DLHECVKMVQLLDKVTKSQSVSSFLGIKPQEK-LMSNSDELRKLCKNNVRTFYHYHG  463 (523)
Q Consensus       387 l~~~d~~~~p~i~~~~~~~~~--D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~H~~G  463 (523)
                      |+++||++.|.|+++|+.++.  |++.+.++++.+++++++.++..+...+..|. ...++++|++|++....+.+|++|
T Consensus       390 L~s~dp~~~P~I~~~y~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~p~~~~~sd~~~~~~ir~~~~~~~H~~G  469 (546)
T 2jbv_A          390 LRSRDFRDKPMVDPRYFTDPEGHDMRVMVAGIRKAREIAAQPAMAEWTGRELSPGVEAQTDEELQDYIRKTHNTVYHPVG  469 (546)
T ss_dssp             CSSSCTTSCCEEECCTTCCTTCHHHHHHHHHHHHHHHHHTSGGGTTTEEEEEESCTTCCSHHHHHHHHHHHCEECSCCBC
T ss_pred             ecCCCCCCCceecccccCCCchhHHHHHHHHHHHHHHHHcCcchhhcccccccCCCCCCCHHHHHHHHHhcCCccccccc
Confidence            999999999999999999999  99999999999999999998877654333332 456889999999998899999999


Q ss_pred             ceecc------cccCCCCcEeccCCcEEeeccccCCCCCCCcHHHHHHHHHHHHHHHHHHH
Q 009873          464 GCIVG------SVVDKDYRVYGVKGLRVIDGSTFQESPGTNPMATVMMLGRYQGVKLVEER  518 (523)
Q Consensus       464 t~~MG------~VvD~~~rv~g~~nL~V~D~Sv~P~~~~~nPtlTi~Ala~r~a~~i~~~~  518 (523)
                      ||+||      +|||++|||||++||||+|+||||+++++||++|+||||+|+|+.|+++.
T Consensus       470 TcrMG~~~d~~~VVD~~lrV~Gv~nLrVvDaSv~P~~~~~np~~ti~aiAeraAd~I~~~~  530 (546)
T 2jbv_A          470 TVRMGAVEDEMSPLDPELRVKGVTGLRVADASVMPEHVTVNPNITVMMIGERCADLIRSAR  530 (546)
T ss_dssp             TTCBCCTTCTTCSBCTTCBBTTSBSEEECSGGGCSSCCSSCCHHHHHHHHHHHHHHC----
T ss_pred             ccccCCCCCCCceECCCCEEECCCCeEEeecccCCCCCCcchHHHHHHHHHHHHHHHHhhc
Confidence            99999      79999999999999999999999999999999999999999999998764

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=100.00  E-value=3.6e-58  Score=490.42  Aligned_cols=442  Identities=21%  Similarity=0.267  Sum_probs=303.4

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCCCCCCccccchhc--cc---cCCCCCCc---cccccCcCCCc
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPFGNPLVTDKRFFG--FS---LLQTDEYT---SVAQSFISTDG  121 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~~~~~~~~~~~~~--~~---~~~~~~~~---~~~~~~~~~~~  121 (523)
                      +.+|||||||||++|+++|.+|++ |++|+|||+|..............|.  ..   +.....+.   ..+........
T Consensus         5 ~~~~D~iIvG~G~aG~~~A~~L~~~g~~VlvlE~g~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~   84 (546)
T 1kdg_A            5 ATPYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDIPGLFESLFTDSNPFWWCKD   84 (546)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCCSGGGTCCCCCGGGGGGTCCTTTCGGGGGGGGTCSCCTTBCTT
T ss_pred             CCceeEEEECcCHHHHHHHHHHHhCCCeEEEEeCCCCCcccccccccccccccccceeeccchhHHHhhcCCCccccccc
Confidence            457999999999999999999999 89999999997432100000000000  00   00000000   00000011123


Q ss_pred             eeecCceecccccccCCccccCCChhhHhh---C--CCCHHHHHHHhHhhhccccCC--C------CCChhHHHHHHHHH
Q 009873          122 VQNHRGRVLGGSSAINGGFYSRAREDFVKK---A--GWDEELVKKAYEWVESKVVFP--P------ELTPWQSVVEFGLL  188 (523)
Q Consensus       122 ~~~~~g~~lGG~s~~~~~~~~r~~~~~~~~---~--~w~~~~~~~~~~~~~~~~~~~--p------~~~~~~~~~~~~~~  188 (523)
                      ..+.+++.+||+|.+|++.+.|+.+.+++.   +  +|.+++  ++|++.++.....  +      ...+....+.++++
T Consensus        85 ~~~~~g~~lGGsS~in~~~~~r~~~~d~d~~~~W~~~w~~~~--p~~~k~e~~~~~~~~~~~~g~~~~~~~~~~~~~a~~  162 (546)
T 1kdg_A           85 ITVFAGCLVGGGTSVNGALYWYPNDGDFSSSVGWPSSWTNHA--PYTSKLSSRLPSTDHPSTDGQRYLEQSFNVVSQLLK  162 (546)
T ss_dssp             BSSCCBCSTTGGGGTSCCBCCCCCGGGGCGGGTCCGGGSCCH--HHHHHHHHHSCCBSCCSTTSCCCSCHHHHHHHHHHH
T ss_pred             cccccceeecccccccceEEecCChHHhcCcccCccccCccc--HHHHHHHhcCCCCccCCCCCCccCCHHHHHHHHHHH
Confidence            456789999999999999999988766543   2  355555  8888887743211  1      12345567778888


Q ss_pred             HcCCCCCCCC-Cc-CCCCcceeeeeEEcCCCeeechHh-hhh-hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEE
Q 009873          189 EAGILPYNGY-SL-EHIEGTKIGGTAFDQCGKRHTSAD-LLE-AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFI  264 (523)
Q Consensus       189 ~~g~~~~~~~-~~-~~~~~~~~~~~~~~~~g~~~~~~~-~l~-~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~  264 (523)
                      +.|++..... .. ....+.....+. +.+|.|+++.. ++. +.+++|++|++++.|++|+++++      +++||++.
T Consensus       163 ~~G~~~~~~~~~~~~~~~g~~~~~~~-~~~g~R~s~~~~~l~~~~~~~~~~i~~~~~V~~i~~~~~------~~~gV~~~  235 (546)
T 1kdg_A          163 GQGYNQATINDNPNYKDHVFGYSAFD-FLNGKRAGPVATYLQTALARPNFTFKTNVMVSNVVRNGS------QILGVQTN  235 (546)
T ss_dssp             TTTCEECCGGGSTTCCTTEEEECCBC-EETTEECHHHHTHHHHHHTCTTEEEECSCCEEEEEEETT------EEEEEEES
T ss_pred             HCCCCcCCccCCcCCCCcEEeeeeec-cCCCcccCHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCC------EEEEEEEE
Confidence            8887432100 00 011121111111 24678887654 455 45568999999999999999865      99999987


Q ss_pred             ec-CCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHhhCCCChhhhhhC------CCCce-----ecCccccccc
Q 009873          265 KS-DGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSGIGPHDHLKDL------NIPTI-----VDLQEVGEGM  332 (523)
Q Consensus       265 ~~-~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~SGig~~~~l~~~------gi~~~-----~~~p~vG~~l  332 (523)
                      +. +|+. ...++.+        ++.||||||+++||+||++||||+.++|+++      ||+++     .++| ||+||
T Consensus       236 ~~~~g~~-~~~~v~~--------~~~VIlaaG~~~sp~lL~~sGig~~~~L~~~gn~s~~GI~v~~~~~~~dlp-VG~nL  305 (546)
T 1kdg_A          236 DPTLGPN-GFIPVTP--------KGRVILSAGAFGTSRILFQSGIGPTDMIQTVQSNPTAAAALPPQNQWINLP-VGMNA  305 (546)
T ss_dssp             CTTSSGG-GEEEEEE--------EEEEEECSHHHHHHHHHHHTTBSCHHHHHHHHTSHHHHHHSCCGGGCBCCC-TTTTB
T ss_pred             ecCCCce-eEEEEEe--------CCEEEEcCChhcCHHHHHHcCCCcHHHHHHhhccccCCcccccccccccCC-cccCc
Confidence            63 3540 0123433        5999999999999999999999999999999      58874     7999 99999


Q ss_pred             ccCcCceEEEecCCCC---------CCCCC---------------cc---eeeeee--cCCC------------------
Q 009873          333 QDNPCIAKLVDTMPQK---------RLPEP---------------PE---VVAGVL--PISS------------------  365 (523)
Q Consensus       333 ~dh~~~~~~~~~~~~~---------~~~~~---------------~~---~~g~~~--~~~~------------------  365 (523)
                      +||+...+.+. .+..         .....               ..   ..+++.  +...                  
T Consensus       306 ~DH~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (546)
T 1kdg_A          306 QDNPSINLVFT-HPSIDAYENWADVWSNPRPADAAQYLANQSGVFAGASPKLNFWRAYSGSDGFTRYAQGTVRPGAASVN  384 (546)
T ss_dssp             BCCCCEEEEEE-CTTCCCGGGGTTTTTSCCHHHHHHHHHHSCSGGGSCSCCEEEEEEEECTTSCEEEEEEEEEESCSCCC
T ss_pred             ccCcceeEEEe-cCCcccccchhhhhcchhHHHHHHHHHcCCcccccCCcceEEEEccCCCCcchhhhhheecccccccc
Confidence            99998877754 2111         00000               00   001110  0000                  


Q ss_pred             C------CCcccEEeeecCc-CcceEEEecCCCCCCCCeeecCCCCChhhHHHHHHHHHHHHHHhcccccccccCCCCCC
Q 009873          366 N------ASRMPIAAKLAFP-ISKGKLELDSTDPRQNPSIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSFLGIKPQE  438 (523)
Q Consensus       366 ~------~~~~~~~~~~~~p-~s~g~v~l~~~d~~~~p~i~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  438 (523)
                      +      ...+.+...+..| .|+|+|+|++.|  ..|.++.+|+.++.|++.+.++++.+++++++.+...+.    .|
T Consensus       385 ~~~~~~~~~~~~~~~~~~~p~~srG~v~L~s~~--~~~~i~~~y~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~----~p  458 (546)
T 1kdg_A          385 SSLPYNASQIFTITVYLSTGIQSRGRIGIDAAL--RGTVLTPPWLVNPVDKTVLLQALHDVVSNIGSIPGLTMI----TP  458 (546)
T ss_dssp             CSSCCCGGGEEEEEEEECTTCCCCBEEEECTTC--CEEEEECCTTCSHHHHHHHHHHHHHHTTTGGGSTTCEEE----ES
T ss_pred             cccccCCCCeEEEEeeecCCCCCCceEecCCCC--CCCcccccccCCchHHHHHHHHHHHHHHHhcCCCccccc----CC
Confidence            0      0112334455677 999999999876  456788899999999999999999999999887533211    12


Q ss_pred             CCCCCHHHHHHHHHcccccccccccceecc-----cccCCCCcEeccCCcEEeeccccCCCCCCCcHHHHHHHHHHHHHH
Q 009873          439 KLMSNSDELRKLCKNNVRTFYHYHGGCIVG-----SVVDKDYRVYGVKGLRVIDGSTFQESPGTNPMATVMMLGRYQGVK  513 (523)
Q Consensus       439 ~~~~~~~~~~~~~~~~~~~~~H~~Gt~~MG-----~VvD~~~rv~g~~nL~V~D~Sv~P~~~~~nPtlTi~Ala~r~a~~  513 (523)
                      ....++++++++++....+.+|++|||+||     +|||++|||||++||||+|+||||+++++||++|+||||+|+||.
T Consensus       459 ~~~~~~~~~~~~~~~~~~t~~H~~GTcrMG~~~~~~VVD~~lrV~Gv~nLrVvDaSv~P~~~~~np~~ti~aiAeraAd~  538 (546)
T 1kdg_A          459 DVTQTLEEYVDAYDPATMNSNHWVSSTTIGSSPQSAVVDSNVKVFGTNNLFIVDAGIIPHLPTGNPQGTLMSAAEQAAAK  538 (546)
T ss_dssp             CTTSCHHHHHHHSCGGGGCCSCCBCTTCBCSCTTTCSBCTTCBBTTCSSEEECSGGGCSSCCSSCSHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHhcCcccccccceecCCCCCCeeECCCCeEccCCCcEEeEecccCCCCCccHHHHHHHHHHHHHHH
Confidence            223577888888888888999999999999     799999999999999999999999999999999999999999999


Q ss_pred             HHHHH
Q 009873          514 LVEER  518 (523)
Q Consensus       514 i~~~~  518 (523)
                      |+++.
T Consensus       539 I~~~~  543 (546)
T 1kdg_A          539 ILALA  543 (546)
T ss_dssp             HHHST
T ss_pred             HHhhc
Confidence            98753

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=100.00  E-value=2.8e-57  Score=477.86  Aligned_cols=419  Identities=19%  Similarity=0.219  Sum_probs=293.4

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCC-CCCCccccchhcccc-CCCCCCccccc--------------
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPF-GNPLVTDKRFFGFSL-LQTDEYTSVAQ--------------  114 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~--------------  114 (523)
                      .+|||||||+|.+|+++|.+|++ |.+|+|||+|.... ..+....+....... .....|.+.++              
T Consensus         4 ~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~t~p~~~~~~l~~~~~~~~   83 (504)
T 1n4w_A            4 GYVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLWNQPGPDGNIFCGMLNPDKRSSWFKNRTEAPLGSFLWLDVVNRN   83 (504)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCCCCCCTTSSSSCCTTSCCGGGSBSCSBCCCCTTCHHHHGGGCCB
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCCcccccccccccCcccccccccccccccccccccccccc
Confidence            46999999999999999999999 89999999998433 122222221110000 00112333232              


Q ss_pred             --cCc------CCCceeecCceecccccccCCccccCCChhhHhh--CCCCHHHHH-HHhHhhhccccCCCCC-------
Q 009873          115 --SFI------STDGVQNHRGRVLGGSSAINGGFYSRAREDFVKK--AGWDEELVK-KAYEWVESKVVFPPEL-------  176 (523)
Q Consensus       115 --~~~------~~~~~~~~~g~~lGG~s~~~~~~~~r~~~~~~~~--~~w~~~~~~-~~~~~~~~~~~~~p~~-------  176 (523)
                        .+.      ..+.+.+.+|++|||+|.+|+|++.|+.+.+++.  .+|.++++. +||+++|+.+...+..       
T Consensus        84 ~~~~~g~~~~~~~~~~~~~rg~~lGGsS~in~~~~~R~~~~Dfd~w~~~w~~~~l~~pyy~~~E~~~~~~~~~~~~~~~~  163 (504)
T 1n4w_A           84 IDPYAGVLDRVNYDQMSVYVGRGVGGGSLVNGGMAVEPKRSYFEEILPRVDSSEMYDRYFPRANSMLRVNHIDTKWFEDT  163 (504)
T ss_dssp             CCCCBCSEEEEECSSCEEEEECSTTGGGGTSCCBCCCCCHHHHHHHCTTSCHHHHHHTHHHHHHHHHTCBCCCHHHHHHC
T ss_pred             ccccccccceecCCceEEEEeeecchHHHhhCeEEEeCCHHHHHHhccccchhhhhhHHHHHHHHHhCCCCCCcccccCC
Confidence              222      3456778899999999999999999999877764  468889999 9999999987643311       


Q ss_pred             --ChhHHHHHHHHHHcCCCCCCCCCcCC-----------CCcce-eeee-EEcCCCeeechHh-hhh-hCCCCCeEEEec
Q 009873          177 --TPWQSVVEFGLLEAGILPYNGYSLEH-----------IEGTK-IGGT-AFDQCGKRHTSAD-LLE-AGNPKNLVVLLN  239 (523)
Q Consensus       177 --~~~~~~~~~~~~~~g~~~~~~~~~~~-----------~~~~~-~~~~-~~~~~g~~~~~~~-~l~-~~~~~g~~i~~~  239 (523)
                        .+..+.+.++++++|+.+.......+           ...+. .+.| .-|..| |+++.. ++. +.++.|++|+++
T Consensus       164 ~~~p~~~~~~~a~~~~G~~~~~~p~~~d~n~~~~~g~g~~~~~~~~G~c~~g~~~g-r~s~~~~~l~~a~~~~n~~i~~~  242 (504)
T 1n4w_A          164 EWYKFARVSREQAGKAGLGTVFVPNVYDFGYMQREAAGEVPKSALATEVIYGNNHG-KQSLDKTYLAAALGTGKVTIQTL  242 (504)
T ss_dssp             GGGHHHHHHHHHHHHTTCCEEECCBSBCHHHHHHHHTTSSCCSGGGTCSTTCCSSS-BCCTTTTHHHHHHHTTSEEEEES
T ss_pred             CcchHHHHHHHHHHHcCCCCccCCcccccCccccccCccccCCcccccccccCCCC-ccCHHHHHHHHHHhcCCcEEEeC
Confidence              24567788889999984211100000           00000 0111 124677 877543 455 445668999999


Q ss_pred             cEEEEEEEcCCCCCCCceeeEEEEEecCC---CCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHhhC-CCChhhhh
Q 009873          240 ATVNNIIFSNNGKANESRAHGIRFIKSDG---SSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSG-IGPHDHLK  315 (523)
Q Consensus       240 ~~V~~l~~~~~g~~~~~~v~GV~~~~~~g---~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~SG-ig~~~~l~  315 (523)
                      +.|++|+++++++    +++||++.+.+|   +   .+++.+         +.||||||+++||+||++|| +|      
T Consensus       243 ~~V~~i~~~~~g~----~~~gV~~~~~~g~~~~---~~~v~A---------~~VIlaaG~~~s~~lL~~Sg~ig------  300 (504)
T 1n4w_A          243 HQVKTIRQTKDGG----YALTVEQKDTDGKLLA---TKEISC---------RYLFLGAGSLGSTELLVRARDTG------  300 (504)
T ss_dssp             EEEEEEEECTTSS----EEEEEEEECTTCCEEE---EEEEEE---------EEEEECSHHHHHHHHHHHHHHTT------
T ss_pred             CEEEEEEECCCCC----EEEEEEEeCCCCccce---eEEEee---------CEEEEccCCCCCHHHHHhccccC------
Confidence            9999999986433    899999986556   4   567887         79999999999999999999 87      


Q ss_pred             hCCCCceecCcccccccccCcCceEEEecCC-CCCCC--CCcceeeeeecCC--------------CC-CCcccEEeeec
Q 009873          316 DLNIPTIVDLQEVGEGMQDNPCIAKLVDTMP-QKRLP--EPPEVVAGVLPIS--------------SN-ASRMPIAAKLA  377 (523)
Q Consensus       316 ~~gi~~~~~~p~vG~~l~dh~~~~~~~~~~~-~~~~~--~~~~~~g~~~~~~--------------~~-~~~~~~~~~~~  377 (523)
                        +|+.+  ++.||+||+||+...+.+...+ ++...  ......++ ....              .. ...+.++..+.
T Consensus       301 --~i~~~--~~~VG~nl~dh~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (504)
T 1n4w_A          301 --TLPNL--NSEVGAGWGPNGNIMTARANHMWNPTGAHQSSIPALGI-DAWDNSDSSVFAEIAPMPAGLETWVSLYLAIT  375 (504)
T ss_dssp             --SSTTC--CTTTTCCBBCTTCEEEEEECCTTCCCCSCCCSSCCEEE-EECCSSTTCEEEEEECCCCSSCCCEEEEEEEE
T ss_pred             --CCCCC--ChhhccccccCCcceeeeccCCCCcccCcCCCccEEEE-eccCCCCCceEEEeccCChHHHhhhhhheeee
Confidence              45543  4579999999998765533221 11000  00111111 1100              00 01233455667


Q ss_pred             CcCcceEEEecCCCCCCCCeeecCCCCChhhHHHHHHHHH-HHHHHhcccccccccCCCCCCCCCCCHHHHHHHHHc---
Q 009873          378 FPISKGKLELDSTDPRQNPSIKFNYLAKEKDLHECVKMVQ-LLDKVTKSQSVSSFLGIKPQEKLMSNSDELRKLCKN---  453 (523)
Q Consensus       378 ~p~s~g~v~l~~~d~~~~p~i~~~~~~~~~D~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  453 (523)
                      .|.++|+|+|+++|+    .|+++|+.++ | +.+.++++ .++++++..+.  +...   +.          ++++   
T Consensus       376 ~p~srG~V~L~s~~~----~i~~~~~~~~-D-~~~~~~~~~~~~~i~~~~~~--~~~~---~~----------~~~~~~~  434 (504)
T 1n4w_A          376 KNPQRGTFVYDAATD----RAKLNWTRDQ-N-APAVNAAKALFDRINKANGT--IYRY---DL----------FGTQLKA  434 (504)
T ss_dssp             CCCCCBCEEEETTTT----EEEECCCGGG-G-HHHHHHHHHHHHHHHHHHTC--CBCC---SS----------SSSSCCS
T ss_pred             ccCCCcEEEecCCCC----ceEeccCCCc-C-HHHHHHHHHHHHHHHhccCC--CcCC---ch----------hhhhhhh
Confidence            899999999998653    7899999999 8 77888888 88888887663  1100   00          1111   


Q ss_pred             -ccccccccccceecccccCCCCcEeccCCcEEeeccccCCCCCCCcHHHHHHHHHHHHHHHHHHHh
Q 009873          454 -NVRTFYHYHGGCIVGSVVDKDYRVYGVKGLRVIDGSTFQESPGTNPMATVMMLGRYQGVKLVEERR  519 (523)
Q Consensus       454 -~~~~~~H~~Gt~~MG~VvD~~~rv~g~~nL~V~D~Sv~P~~~~~nPtlTi~Ala~r~a~~i~~~~~  519 (523)
                       ...+.+|++|||+||+|||++|||||++||||+|+||||+++++||++|+||||+|+|+.|++++.
T Consensus       435 ~~~~~~~H~~GTcrMG~VVD~~~rV~Gv~nLrVvDaSv~P~~~~~np~~ti~aiAeraAd~I~~~~~  501 (504)
T 1n4w_A          435 FADDFCYHPLGGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVERIIKQDV  501 (504)
T ss_dssp             EECSEESSCBCSSCTTTTBCTTSBBTTCSSEEECSGGGSCSCCSSCSHHHHHHHHHHHHHHHHHHHC
T ss_pred             hccCccccccCCceeeeEECCCCeEeccCCeEEeeccccCCCCCcChHHHHHHHHHHHHHHHHHhhc
Confidence             456789999999999999999999999999999999999999999999999999999999998865

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=100.00  E-value=3.8e-57  Score=476.89  Aligned_cols=426  Identities=16%  Similarity=0.200  Sum_probs=290.4

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCCC-CCCccccchhcccc-C---CCCCCccccc----------
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPFG-NPLVTDKRFFGFSL-L---QTDEYTSVAQ----------  114 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~~-~~~~~~~~~~~~~~-~---~~~~~~~~~~----------  114 (523)
                      ..+||+||||+|.+|+++|.+|++ +.+|+|||+|..... .+..   ..+.... .   ..+.|.+.+|          
T Consensus         9 ~~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~~~~~~p~~---~~~~~~~~~~~~~~w~~~~~pq~~~~~~~~~~   85 (507)
T 1coy_A            9 GDRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGRSWDTPGSDG---KIFCGMLNPDKRSMWLADKTDQPVSNFMGFGI   85 (507)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCSCSCCTTS---CSSCCSSSCCTTSBBSCSBCCCSSCSBTTBSC
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCCCCCCCcc---cccccccccccccccccccccccccccccccc
Confidence            457999999999999999999999 899999999974321 1100   0111111 0   1112334343          


Q ss_pred             -----cCc------CCCceeecCceecccccccCCccccCCChhhHhh--CCCCHHHHH-HHhHhhhccccCCCC-----
Q 009873          115 -----SFI------STDGVQNHRGRVLGGSSAINGGFYSRAREDFVKK--AGWDEELVK-KAYEWVESKVVFPPE-----  175 (523)
Q Consensus       115 -----~~~------~~~~~~~~~g~~lGG~s~~~~~~~~r~~~~~~~~--~~w~~~~~~-~~~~~~~~~~~~~p~-----  175 (523)
                           .+.      .++.+.+.+|++|||+|++|+|++.|+.+.+++.  .+|.++++. +||+++|+.+...+.     
T Consensus        86 ~~~~~~~~g~~~~~~~~~~~~~rg~~lGGsS~in~~~~~R~~~~dfd~w~~~w~~~~l~~pyy~~~E~~~~~~~~~~~~~  165 (507)
T 1coy_A           86 NKSIDRYVGVLDSERFSGIKVYQGRGVGGGSLVNGGMAVTPKRNYFEEILPSVDSNEMYNKYFPRANTGLGVNNIDQAWF  165 (507)
T ss_dssp             CCBCCCCBCSEEEEECSSCEEEEECSTTGGGGTSCCBCCCCCHHHHHHHCTTSCHHHHHHTHHHHHHHHHTCBCCCHHHH
T ss_pred             ccccccccceeeEecCCCeEEEEecccchHHHhhCeEEeeCCHHHHHhhCCccchhcchhHHHHHHHHHhCCCCCCCccc
Confidence                 222      4456778899999999999999999999877764  368889999 999999998765431     


Q ss_pred             ----CChhHHHHHHHHHHcCCCCCCCCCcCC-----------CCcc-eeeee-EEcCCCeeechHh-hhh-hCCCCCeEE
Q 009873          176 ----LTPWQSVVEFGLLEAGILPYNGYSLEH-----------IEGT-KIGGT-AFDQCGKRHTSAD-LLE-AGNPKNLVV  236 (523)
Q Consensus       176 ----~~~~~~~~~~~~~~~g~~~~~~~~~~~-----------~~~~-~~~~~-~~~~~g~~~~~~~-~l~-~~~~~g~~i  236 (523)
                          ..+..+.+.++++++|+.+.......+           ...+ ..+.| .-|..| |+++.. ++. +.++.|++|
T Consensus       166 ~~~~~~~~~~~~~~a~~~~G~~~~~~p~~~d~n~~~~~g~~~~~~~~~~g~C~~gc~~g-R~s~~~~~l~~a~~~~n~~i  244 (507)
T 1coy_A          166 ESTEWYKFARTGRKTAQRSGFTTAFVPNVYDFEYMKKEAAGQVTKSGLGGEVIYGNNAG-KKSLDKTYLAQAAATGKLTI  244 (507)
T ss_dssp             HHCGGGHHHHHHHHHHHHTTCCEEECCBSBCHHHHHHHHTTCSCCSTTTTCSTTCCSSS-BCCTTTTHHHHHHHTTCEEE
T ss_pred             cccccchHHHHHHHHHHHcCCCCccCCcccccCcccccCCCcccCccccccccccCCCC-CcChHHHHHHHHHhcCCcEE
Confidence                134567788889999984211100000           0000 00111 114567 877544 455 445678999


Q ss_pred             EeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHhhC-CCChhhhh
Q 009873          237 LLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSG-IGPHDHLK  315 (523)
Q Consensus       237 ~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~SG-ig~~~~l~  315 (523)
                      ++++.|++|++++++.    +++||++.+.+|+....+++.+         +.||||||+++||+||++|| +|..+   
T Consensus       245 ~~~~~v~~i~~~~~g~----~~~gV~~~~~~g~~~~~~~~~A---------~~VIlaaGa~~sp~lL~~Sg~iG~lp---  308 (507)
T 1coy_A          245 TTLHRVTKVAPATGSG----YSVTMEQIDEQGNVVATKVVTA---------DRVFFAAGSVGTSKLLVSMKAQGHLP---  308 (507)
T ss_dssp             ECSEEEEEEEECSSSS----EEEEEEEECTTSCEEEEEEEEE---------EEEEECSHHHHHHHHHHHHHHTTSST---
T ss_pred             EeCCEEEEEEECCCCC----EEEEEEEeCCCCcccccEEEEe---------CEEEEccCccCCHHHHHhcccCCCCC---
Confidence            9999999999987432    7999999864452000467887         79999999999999999999 87421   


Q ss_pred             hCCCCceecCcccccccccCcCceEEEecCC-CCCCC--CCcceeee-eecC----------CC--C-CCcccEEeeecC
Q 009873          316 DLNIPTIVDLQEVGEGMQDNPCIAKLVDTMP-QKRLP--EPPEVVAG-VLPI----------SS--N-ASRMPIAAKLAF  378 (523)
Q Consensus       316 ~~gi~~~~~~p~vG~~l~dh~~~~~~~~~~~-~~~~~--~~~~~~g~-~~~~----------~~--~-~~~~~~~~~~~~  378 (523)
                             ...+.||+||++|+.....+.... ++...  ......++ ++..          ..  . ...+.++..+..
T Consensus       309 -------nl~d~VG~~l~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (507)
T 1coy_A          309 -------NLSSQVGEGWGNNGNIMVGRANHMWDATGSKQATIPTMGIDNWADPTAPIFAEIAPLPAGLETYVSLYLAITK  381 (507)
T ss_dssp             -------TSCTTTTCCBBCTTEEEEEEECCTTSCCCSCCCSSCCEEEECTTCTTSCEEEEEECCCCSSCCCEEEEEEEEC
T ss_pred             -------ccChhhCCccccCCcccccccccccccccccCCCcceEEEeccCCCCCCcEEEeccCCHHHhhheeeeEEEee
Confidence                   224579999999986433211111 11100  00111111 1100          00  0 012334456678


Q ss_pred             cCcceEEEecCCCCCCCCeeecCCCCChhhHHHHHHHHH-HHHHHhcccccccccCCCCCCCCCCCHHHHHHHHHccccc
Q 009873          379 PISKGKLELDSTDPRQNPSIKFNYLAKEKDLHECVKMVQ-LLDKVTKSQSVSSFLGIKPQEKLMSNSDELRKLCKNNVRT  457 (523)
Q Consensus       379 p~s~g~v~l~~~d~~~~p~i~~~~~~~~~D~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  457 (523)
                      |.++|+|+|+++|+    .|+++|+.++ | +.+.++++ .++++++..+.  +...+.    ..+++  ++|   ...+
T Consensus       382 p~s~G~V~L~s~~~----~i~~~~~~~~-D-~~~~~~~~~~~~~i~~~~~~--~~~~~~----~~~d~--~~~---~~~~  444 (507)
T 1coy_A          382 NPERARFQFNSGTG----KVDLTWAQSQ-N-QKGIDMAKKVFDKINQKEGT--IYRTDL----FGVYY--KTW---GDDF  444 (507)
T ss_dssp             CCCCBCEEEETTTT----EEEECCCGGG-G-HHHHHHHHHHHHHHHHHHTC--CBCSSC----C--CC--CSS---BCSE
T ss_pred             eCCCcEEEEccCCC----ceeeccCCCC-c-HHHHHHHHHHHHHHHhhcCC--cccCcc----cccch--hhh---cccc
Confidence            99999999998654    8999999999 8 45666666 88999988762  222111    01111  112   4567


Q ss_pred             ccccccceecccccCCCCcEeccCCcEEeeccccCCCCCCCcHHHHHHHHHHHHHHHHHHHhh
Q 009873          458 FYHYHGGCIVGSVVDKDYRVYGVKGLRVIDGSTFQESPGTNPMATVMMLGRYQGVKLVEERRE  520 (523)
Q Consensus       458 ~~H~~Gt~~MG~VvD~~~rv~g~~nL~V~D~Sv~P~~~~~nPtlTi~Ala~r~a~~i~~~~~~  520 (523)
                      .+|++|||+||+|||++|||||++||||+|+||||+++++||++|+||||+|+||.|++++++
T Consensus       445 ~~H~~GTcrMG~VVD~~~rV~Gv~nLrVvDaSv~P~~~~~Np~~ti~alAeraAd~I~~~~~~  507 (507)
T 1coy_A          445 TYHPLGGVLLNKATDNFGRLPEYPGLYVVDGSLVPGNVGVNPFVTITALAERNMDKIISSDIQ  507 (507)
T ss_dssp             ESCCBCSSCTTTTSCTTSBCTTSTTEEECSGGGSCSCCSSCSHHHHHHHHHHHHHHHHHHTC-
T ss_pred             cccccCCcchhheECCCCeEeccCCeEEeechhccCCCCcChHHHHHHHHHHHHHHHHHHhcC
Confidence            899999999999999999999999999999999999999999999999999999999998764

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=100.00  E-value=3.4e-46  Score=400.99  Aligned_cols=430  Identities=17%  Similarity=0.143  Sum_probs=277.0

Q ss_pred             cCCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCCCCCCccc-cchh---------c----cccCC---------
Q 009873           50 AGKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPFGNPLVTD-KRFF---------G----FSLLQ---------  105 (523)
Q Consensus        50 ~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~~~~~~~~-~~~~---------~----~~~~~---------  105 (523)
                      +..+|||||||||++|+++|+.|++ |++|+||||+....+...... ...+         .    .....         
T Consensus        43 ~~~~~dvvIIG~G~aGl~aA~~l~~~G~~V~liE~~~~~gg~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~l~~~~  122 (623)
T 3pl8_A           43 MDIKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDSGLKIGAHKKNTVEYQKNIDKFVNVIQGQLMSVSVPVNTLV  122 (623)
T ss_dssp             ---CEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCSSSSTTCCTTCSHHHHHSGGGTHHHHHHTCEESCCCCCCCC
T ss_pred             ccccCCEEEECCcHHHHHHHHHHHhCCCcEEEEeccCCCCCcccccccccccCCCccHHHHHHHHHHhhhhccccccccc
Confidence            3467999999999999999999999 999999999985543110000 0000         0    00000         


Q ss_pred             -----------CCCC-ccccccC-cCCCce-eecCceecccccccCCccccCCChhhH--hhCCC---CHHHHHHHhHhh
Q 009873          106 -----------TDEY-TSVAQSF-ISTDGV-QNHRGRVLGGSSAINGGFYSRAREDFV--KKAGW---DEELVKKAYEWV  166 (523)
Q Consensus       106 -----------~~~~-~~~~~~~-~~~~~~-~~~~g~~lGG~s~~~~~~~~r~~~~~~--~~~~w---~~~~~~~~~~~~  166 (523)
                                 ...+ ....... ...+.+ ....+..+||.+.+|.+...|......  ...+|   ..+++.++|+..
T Consensus       123 ~~~~~~~~~~~~~v~l~~g~~~~~~~~~~l~~~~~~~~vGG~~~~~~g~~~r~~~~e~~~~l~~~~v~~~~~l~~~~~~~  202 (623)
T 3pl8_A          123 VDTLSPTSWQASTFFVRNGSNPEQDPLRNLSGQAVTRVVGGMSTAWTCATPRFDREQRPLLVKDDADADDAEWDRLYTKA  202 (623)
T ss_dssp             CCCSCTTSCCCSSCCSCTTCCTTCCTTSCCTTCEECCSTTGGGGTCCCBCCCCCGGGSCCSSTTCHHHHHHHHHHHHHHH
T ss_pred             cccccccccccCcEEeccCCCcccccchhhhhhcccccccCcceeeccccccCChHHhhhhhcccCccChhhHHHHHHHH
Confidence                       0000 0000000 000000 112456789999999998887654321  01123   235666777766


Q ss_pred             hccccCCCC--CChhH-HHHHHHHHHcCCCCCCCCCcCCCCcceeeeeEEcCCCeeechHh-hhh-h------CCCCCeE
Q 009873          167 ESKVVFPPE--LTPWQ-SVVEFGLLEAGILPYNGYSLEHIEGTKIGGTAFDQCGKRHTSAD-LLE-A------GNPKNLV  235 (523)
Q Consensus       167 ~~~~~~~p~--~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~l~-~------~~~~g~~  235 (523)
                      +..+.....  ..... ......+....... .  ....   .............++++.. ++. .      .+++|++
T Consensus       203 ~~l~~vgg~~~~~~~~~~~~~~~l~~~~~~~-~--~~~~---~p~a~~~~~~~~~r~s~~~~~l~~~~~l~~~~~~~nv~  276 (623)
T 3pl8_A          203 ESYFQTGTDQFKESIRHNLVLNKLTEEYKGQ-R--DFQQ---IPLAATRRSPTFVEWSSANTVFDLQNRPNTDAPEERFN  276 (623)
T ss_dssp             HHHHTEESCTTTTCHHHHHHHHHHHHHTTTT-S--CCEE---CCEEEEEEETTEEEECCHHHHCCCCCEEETTEEEEEEE
T ss_pred             HHhcccccccccCccccccchHHHHHhhhhc-c--cccc---cchhhccCCCCccccchHHhhhhhhhcchhhccCCCEE
Confidence            554432221  11111 11112222211100 0  0000   0011111122233444333 343 2      3456999


Q ss_pred             EEeccEEEEEEEcCCCCCCCceeeEEEEEe-cCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHhhCCCChhhh
Q 009873          236 VLLNATVNNIIFSNNGKANESRAHGIRFIK-SDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSGIGPHDHL  314 (523)
Q Consensus       236 i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~-~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~SGig~~~~l  314 (523)
                      |++++.|++|+++++++    +++||++.+ .+|+   .+++.+         +.||||+|++.||++|+.||+|+..++
T Consensus       277 v~~~~~V~~i~~~~~~~----~v~GV~~~~~~~g~---~~~i~A---------~~VIlaaG~~~s~~lL~~sgiG~~~~l  340 (623)
T 3pl8_A          277 LFPAVACERVVRNALNS----EIESLHIHDLISGD---RFEIKA---------DVYVLTAGAVHNTQLLVNSGFGQLGRP  340 (623)
T ss_dssp             EECSEEEEEEEECTTSS----CEEEEEEEETTTCC---EEEECE---------EEEEECSCTTHHHHHHHTTTSSCCSSC
T ss_pred             EEeCCEEEEEEEECCCC----EEEEEEEEEcCCCc---EEEEEC---------CEEEEcCCCcCCHHHHHhcCCCccccc
Confidence            99999999999986543    899999987 4577   777887         899999999999999999999999999


Q ss_pred             hhCCCCceecCcccccccccCcCceEEEecCCC------------------CC----------CC---CCcc--------
Q 009873          315 KDLNIPTIVDLQEVGEGMQDNPCIAKLVDTMPQ------------------KR----------LP---EPPE--------  355 (523)
Q Consensus       315 ~~~gi~~~~~~p~vG~~l~dh~~~~~~~~~~~~------------------~~----------~~---~~~~--------  355 (523)
                      +.+||++  ++|+||+||+||+...+.+...++                  ..          ..   .|..        
T Consensus       341 ~~~~i~~--~l~~vG~nl~dh~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~p~~~~~p~~~~~~~~~~~~  418 (623)
T 3pl8_A          341 NPANPPE--LLPSLGSYITEQSLVFCQTVMSTELIDSVKSDMTIRGTPGELTYSVTYTPGASTNKHPDWWNEKVKNHMMQ  418 (623)
T ss_dssp             CTTSCCS--SCTTTTBSCBCCCEEEEEEEECHHHHHHHTTTCEEESCTTSTTCEEECCTTCTTCSSCHHHHHHHHHHHHH
T ss_pred             cccCCCC--CCcccccchhhCcCceEEEEECCcccccccccccccccCCCcceecccccCcccccCCchhhhhhhhhhhc
Confidence            9999998  999999999999988776544321                  00          00   0000        


Q ss_pred             ----ee---------eeeecC------------------CCCCC---c--c-cEEeeecCcCcceEEEecC--CCCCCCC
Q 009873          356 ----VV---------AGVLPI------------------SSNAS---R--M-PIAAKLAFPISKGKLELDS--TDPRQNP  396 (523)
Q Consensus       356 ----~~---------g~~~~~------------------~~~~~---~--~-~~~~~~~~p~s~g~v~l~~--~d~~~~p  396 (523)
                          ..         -.+.+.                  .++..   .  . -.......|.++|+|+|++  +|++|.|
T Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~n~v~L~~~~~D~~g~P  498 (623)
T 3pl8_A          419 HQEDPLPIPFEDPEPQVTTLFQPSHPWHTQIHRDAFSYGAVQQSIDSRLIVDWRFFGRTEPKEENKLWFSDKITDAYNMP  498 (623)
T ss_dssp             CTTCCCSSCTTCCCCEEECCCBTTBCEEEEEECCSCCCSCCCCSSCGGGEEEEEEEECCCCCTTCEEEEEEEEECTTSSE
T ss_pred             ccccccccccccccccccccccccCcchhhhhhhhccccccccccccceEEEEEEEEeeccCCCCEEEECCCCcCCCCCc
Confidence                00         000000                  00100   0  0 0224556899999999986  7999999


Q ss_pred             eeecCCCCChh-hHHHHHHHHHHHHHHhcccccccccCCCCCCCCCCCHHHHHHHHHcccccccccccceecc------c
Q 009873          397 SIKFNYLAKEK-DLHECVKMVQLLDKVTKSQSVSSFLGIKPQEKLMSNSDELRKLCKNNVRTFYHYHGGCIVG------S  469 (523)
Q Consensus       397 ~i~~~~~~~~~-D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gt~~MG------~  469 (523)
                      .++++|..++. |++.+.++.+.+.++++.++........          .     ....++++|++|||+||      +
T Consensus       499 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~g~~~~~~~~----------~-----~~~~~~~~H~~gt~~mg~~~~~~~  563 (623)
T 3pl8_A          499 QPTFDFRFPAGRTSKEAEDMMTDMCVMSAKIGGFLPGSLP----------Q-----FMEPGLVLHLGGTHRMGFDEKEDN  563 (623)
T ss_dssp             EEEEECCCCTTHHHHHHHHHHHHHHHHHTTTEEECTTSCS----------E-----ECCTTTTCCCBCTTCBCSSTTTTT
T ss_pred             eEEEEEeCCcHHHHHHHHHHHHHHHHHHHhcCCcccCchh----------h-----ccCCCCcccCCCceeCCCCCCCCe
Confidence            99999999999 9999999999999999988764321100          0     01246789999999999      5


Q ss_pred             cc-CCCCcEeccCCcEEeeccccCCCCCCCcHHHHHHHHHHHHHHHHHHH
Q 009873          470 VV-DKDYRVYGVKGLRVIDGSTFQESPGTNPMATVMMLGRYQGVKLVEER  518 (523)
Q Consensus       470 Vv-D~~~rv~g~~nL~V~D~Sv~P~~~~~nPtlTi~Ala~r~a~~i~~~~  518 (523)
                      || |++|||||++||||+|+|+||+++++||++|+||||+|+|++|+++.
T Consensus       564 vvvd~~~~~~~~~~l~v~d~s~~p~~~~~np~~t~~a~a~r~a~~i~~~~  613 (623)
T 3pl8_A          564 CCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLAIKSCEYIKQNF  613 (623)
T ss_dssp             CSBCTTCBBTTCSSEEECSGGGCCSCCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred             eEECCCCCEecCCCeEEecCCccCCCCCcChHHHHHHHHHHHHHHHHHHh
Confidence            87 99999999999999999999999999999999999999999998764

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=99.64  E-value=8.4e-16  Score=161.96  Aligned_cols=194  Identities=19%  Similarity=0.209  Sum_probs=110.2

Q ss_pred             ccCCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCCCCCCccccchhccccCCCCCCccccccCcCCCceeecCc
Q 009873           49 VAGKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEYTSVAQSFISTDGVQNHRG  127 (523)
Q Consensus        49 ~~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  127 (523)
                      .++.+|||||||||++|+++|++|++ |++|+||||++                                          
T Consensus        37 ~~~~~~DVvVVGaG~AGl~AA~~aa~~G~~V~vlEk~~------------------------------------------   74 (510)
T 4at0_A           37 EWDYEADVVVAGYGIAGVAASIEAARAGADVLVLERTS------------------------------------------   74 (510)
T ss_dssp             CCSEEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS------------------------------------------
T ss_pred             ccCCcCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC------------------------------------------
Confidence            34678999999999999999999999 99999999997                                          


Q ss_pred             eecccccccCCccccCC-ChhhHhhCC--CCHHHHHHHhHhhhccccCCCC----CChhHHHHHHHHHHcCCCCCCCC--
Q 009873          128 RVLGGSSAINGGFYSRA-REDFVKKAG--WDEELVKKAYEWVESKVVFPPE----LTPWQSVVEFGLLEAGILPYNGY--  198 (523)
Q Consensus       128 ~~lGG~s~~~~~~~~r~-~~~~~~~~~--w~~~~~~~~~~~~~~~~~~~p~----~~~~~~~~~~~~~~~g~~~~~~~--  198 (523)
                       .+||+|.++++.++.+ ....+...+  .+.+.+..++.+...... .+.    +........+++.+.|+......  
T Consensus        75 -~~GG~s~~s~G~~~~~~~~~~~~~~g~~ds~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~~  152 (510)
T 4at0_A           75 -GWGGATALAGGFIYLGGGTPLQKACGFDDSPENMKTFMMAALGPGA-DEEKITDYCEGSVEHYNWLVDCGVPFKESFWG  152 (510)
T ss_dssp             -SSCTTGGGSCCCEECCSSCHHHHHTTCCCCHHHHHHHHHHHSCSSC-CHHHHHHHHHTHHHHHHHHHHTTCCCCSCEEC
T ss_pred             -CCCCcchhcCcceecCCCCHHHHHhCCCCCHHHHHHHHHHHhCCCC-CHHHHHHHHHhhHHHHHHHHHcCCeecccccC
Confidence             4577777777765543 222222222  222333333222111100 000    00112334566677776321110  


Q ss_pred             ----CcCCCCcc------------------eeeeeEEc---CCCeee---chHh-hhhhCCCCCeEEEeccEEEEEEEcC
Q 009873          199 ----SLEHIEGT------------------KIGGTAFD---QCGKRH---TSAD-LLEAGNPKNLVVLLNATVNNIIFSN  249 (523)
Q Consensus       199 ----~~~~~~~~------------------~~~~~~~~---~~g~~~---~~~~-~l~~~~~~g~~i~~~~~V~~l~~~~  249 (523)
                          ......+.                  ..+.....   ..+...   .... ++..+++.|++|+++++|++|+.++
T Consensus       153 ~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~r~~~~~~~~~~~g~~~g~~~l~~~L~~~~~~~Gv~i~~~t~v~~L~~~~  232 (510)
T 4at0_A          153 EPGWEPPFDDGLMYSGGENAAPFNEIAAPAPRGHVPQMDGKRTGEKGGGYMLMKPLVETAEKLGVRAEYDMRVQTLVTDD  232 (510)
T ss_dssp             SSSSSCSSSCSEECCSSTTSTTGGGTSCCCCCEECCCCSSCBTTTBCTTHHHHHHHHHHHHHTTCEEECSEEEEEEEECT
T ss_pred             CcccccCCcccccccCcccccccccccCcccceeeecccccccccCCCHHHHHHHHHHHHHHcCCEEEecCEeEEEEECC
Confidence                00000000                  00000000   011111   1112 2335566799999999999999984


Q ss_pred             CCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchh-HHHH
Q 009873          250 NGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGS-PQLL  303 (523)
Q Consensus       250 ~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~t-p~lL  303 (523)
                      ++     +|+||++.+ +++   .+++.+        +|.||||+|++.. +.++
T Consensus       233 ~g-----~v~GV~~~~-~g~---~~~i~A--------~k~VVlAtGG~~~n~~m~  270 (510)
T 4at0_A          233 TG-----RVVGIVAKQ-YGK---EVAVRA--------RRGVVLATGSFAYNDKMI  270 (510)
T ss_dssp             TC-----CEEEEEEEE-TTE---EEEEEE--------EEEEEECCCCCTTCHHHH
T ss_pred             CC-----cEEEEEEEE-CCc---EEEEEe--------CCeEEEeCCChhhCHHHH
Confidence            43     899999987 455   567876        3499999999984 4444

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=99.54  E-value=1.7e-14  Score=153.90  Aligned_cols=190  Identities=18%  Similarity=0.188  Sum_probs=109.7

Q ss_pred             cCCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCCCCCCccccchhccccCCCCCCccccccCcCCCceeecCce
Q 009873           50 AGKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEYTSVAQSFISTDGVQNHRGR  128 (523)
Q Consensus        50 ~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  128 (523)
                      ...++||||||||++|+++|+.|++ |++|+||||++                                           
T Consensus       118 ~~~~~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~-------------------------------------------  154 (566)
T 1qo8_A          118 PSETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAP-------------------------------------------  154 (566)
T ss_dssp             CSEEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSS-------------------------------------------
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC-------------------------------------------
Confidence            4578999999999999999999999 99999999997                                           


Q ss_pred             ecccccccCCccccCCChhhHhhCCCCHHHHHHHhHhhhccccCC--CC----CChhHHHHHHHHHHcCCCCCCCCCcCC
Q 009873          129 VLGGSSAINGGFYSRAREDFVKKAGWDEELVKKAYEWVESKVVFP--PE----LTPWQSVVEFGLLEAGILPYNGYSLEH  202 (523)
Q Consensus       129 ~lGG~s~~~~~~~~r~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~--p~----~~~~~~~~~~~~~~~g~~~~~~~~~~~  202 (523)
                      .+||.|..+++.........+...+.. +..+.+++...+.....  +.    +........+++.+.|++ +....  .
T Consensus       155 ~~gg~s~~s~gg~~~~~~~~~~~~g~~-ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~Gv~-~~~~~--~  230 (566)
T 1qo8_A          155 FSGGNSMISAGGMNAVGTKQQTAHGVE-DKVEWFIEDAMKGGRQQNDIKLVTILAEQSADGVQWLESLGAN-LDDLK--R  230 (566)
T ss_dssp             SSCTTGGGCCSCEECSSCHHHHHTTCC-CCHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHTTCC-CCEEE--C
T ss_pred             CCCCcccccCceeEccCCHHHHHhCCC-CCHHHHHHHHHHhcCCCCCHHHHHHHHhccHHHHHHHHhcCCc-ccccc--c
Confidence            346666666555443333333222211 11122222221110000  00    001123345667777763 21100  0


Q ss_pred             CCcceeeeeEEcCCCe--eechHhhh-hhCCCCCeEEEeccEEEEEEEcC-CCCCCCceeeEEEEEecCCCCCceeEEEe
Q 009873          203 IEGTKIGGTAFDQCGK--RHTSADLL-EAGNPKNLVVLLNATVNNIIFSN-NGKANESRAHGIRFIKSDGSSNHMHEAYL  278 (523)
Q Consensus       203 ~~~~~~~~~~~~~~g~--~~~~~~~l-~~~~~~g~~i~~~~~V~~l~~~~-~g~~~~~~v~GV~~~~~~g~~~~~~~i~a  278 (523)
                      ..+...........+.  .......| ..+++.|++|+++++|++|+.++ +      +|+||++.+.+|+   ..++.+
T Consensus       231 ~~g~~~~r~~~~~~~~~~~~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g------~v~Gv~~~~~~g~---~~~i~A  301 (566)
T 1qo8_A          231 SGGARVDRTHRPHGGKSSGPEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDDH------SVVGAVVHGKHTG---YYMIGA  301 (566)
T ss_dssp             CTTCSSCCEEECSSSSCHHHHHHHHHHHHHHHTTCCEECSEEEEEEEECTTS------BEEEEEEEETTTE---EEEEEE
T ss_pred             cCCCCCCceeecCCCCCCHHHHHHHHHHHHHhcCCEEEeCCEEEEEEECCCC------cEEEEEEEeCCCc---EEEEEc
Confidence            0111111111111111  01111223 35556799999999999999987 5      8999999875676   667887


Q ss_pred             cCCCCCCCCCcEEEecCCchhHHHHH
Q 009873          279 NKPGNSSTWGDVILSAGALGSPQLLL  304 (523)
Q Consensus       279 ~~~~~~~~~~~VILaaGa~~tp~lLl  304 (523)
                               +.||||+|++...+-|+
T Consensus       302 ---------~~VVlAtGg~s~~~~~~  318 (566)
T 1qo8_A          302 ---------KSVVLATGGYGMNKEMI  318 (566)
T ss_dssp             ---------EEEEECCCCCTTCHHHH
T ss_pred             ---------CEEEEecCCcccCHHHH
Confidence                     99999999998654444

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=99.52  E-value=3.5e-14  Score=151.70  Aligned_cols=191  Identities=18%  Similarity=0.203  Sum_probs=107.4

Q ss_pred             cCCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCCCCCCccccchhccccCCCCCCccccccCcCCCceeecCce
Q 009873           50 AGKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEYTSVAQSFISTDGVQNHRGR  128 (523)
Q Consensus        50 ~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  128 (523)
                      ...++||||||||++|+++|+.|++ |++|+||||.+                                           
T Consensus       123 ~~~~~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~~-------------------------------------------  159 (571)
T 1y0p_A          123 PHDTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEP-------------------------------------------  159 (571)
T ss_dssp             CSEECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS-------------------------------------------
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC-------------------------------------------
Confidence            3457999999999999999999999 99999999997                                           


Q ss_pred             ecccccccCCccccCCChhhHhhCCCCHHHHHHHhHhhhccccC--CCC----CChhHHHHHHHHHHcCCCCCCCCCcCC
Q 009873          129 VLGGSSAINGGFYSRAREDFVKKAGWDEELVKKAYEWVESKVVF--PPE----LTPWQSVVEFGLLEAGILPYNGYSLEH  202 (523)
Q Consensus       129 ~lGG~s~~~~~~~~r~~~~~~~~~~w~~~~~~~~~~~~~~~~~~--~p~----~~~~~~~~~~~~~~~g~~~~~~~~~~~  202 (523)
                      .+||.|.+.++.........+...+.. +..+.++....+.-..  .+.    +........+++.+.|++ +...  ..
T Consensus       160 ~~gg~s~~a~gg~~~~~~~~~~~~g~~-ds~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~-~~~~--~~  235 (571)
T 1y0p_A          160 VIGGNAKLAAGGMNAAWTDQQKAKKIT-DSPELMFEDTMKGGQNINDPALVKVLSSHSKDSVDWMTAMGAD-LTDV--GM  235 (571)
T ss_dssp             SSCTTGGGCCSCEECSSCHHHHHTTCC-CCHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHTTCC-CCEE--EC
T ss_pred             CCCCchhhcCceEEeCCCHHHHHhCCC-CCHHHHHHHHHHhcCCCCCHHHHHHHHHccHHHHHHHHhcCCC-CccC--cc
Confidence            345555555544433322222222211 1111222211110000  000    001122345666677763 2110  00


Q ss_pred             CCcceeeeeEEcCCCeee--chHhhh-hhCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEec
Q 009873          203 IEGTKIGGTAFDQCGKRH--TSADLL-EAGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLN  279 (523)
Q Consensus       203 ~~~~~~~~~~~~~~g~~~--~~~~~l-~~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~  279 (523)
                      ..+...........|...  .....| ..+++.|++|+++++|++|+.++++     +|+||++.+.+|+   ..++.+ 
T Consensus       236 ~~g~~~~r~~~~~~g~~~g~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g-----~v~Gv~~~~~~g~---~~~i~a-  306 (571)
T 1y0p_A          236 MGGASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKG-----TVKGILVKGMYKG---YYWVKA-  306 (571)
T ss_dssp             CTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCEEESSEEEEEEEECTTS-----CEEEEEEEETTTE---EEEEEC-
T ss_pred             cCCcCCCeeEecCCCCCCHHHHHHHHHHHHHhcCCEEEeCCEeeEeEEcCCC-----eEEEEEEEeCCCc---EEEEEC-
Confidence            011111111111111111  111223 3556679999999999999997733     8999999875676   667886 


Q ss_pred             CCCCCCCCCcEEEecCCchhHHHHH
Q 009873          280 KPGNSSTWGDVILSAGALGSPQLLL  304 (523)
Q Consensus       280 ~~~~~~~~~~VILaaGa~~tp~lLl  304 (523)
                              +.||||+|++...+-|+
T Consensus       307 --------~~VVlAtGg~~~n~~~~  323 (571)
T 1y0p_A          307 --------DAVILATGGFAKNNERV  323 (571)
T ss_dssp             --------SEEEECCCCCTTCHHHH
T ss_pred             --------CeEEEeCCCcccCHHHH
Confidence                    89999999997644433

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=99.45  E-value=3.7e-13  Score=143.88  Aligned_cols=55  Identities=13%  Similarity=0.294  Sum_probs=46.8

Q ss_pred             hhCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEe-cCCCCCceeEEEecCCCCCCCCCcEEEecCCchh
Q 009873          227 EAGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIK-SDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGS  299 (523)
Q Consensus       227 ~~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~-~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~t  299 (523)
                      ..+.+.|++|++++.|++|+.+++      +|.||.+.+ .+|+   .+.+.+         +.||||+|+++.
T Consensus       163 ~~~~~~gv~i~~~~~v~~Li~~~g------~v~Gv~~~~~~~G~---~~~i~A---------~~VVlATGG~~~  218 (621)
T 2h88_A          163 GRSLRYDTSYFVEYFALDLLMENG------ECRGVIALCIEDGT---IHRFRA---------KNTVIATGGYGR  218 (621)
T ss_dssp             HHHTTSCCEEEETEEEEEEEEETT------EEEEEEEEETTTCC---EEEEEE---------EEEEECCCCCGG
T ss_pred             HHHHhCCCEEEEceEEEEEEEECC------EEEEEEEEEcCCCc---EEEEEc---------CeEEECCCcccc
Confidence            355678999999999999999765      999999876 4577   677887         999999999875

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=99.41  E-value=8.9e-13  Score=141.94  Aligned_cols=54  Identities=9%  Similarity=0.138  Sum_probs=45.4

Q ss_pred             hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEe-cCCCCCceeEEEecCCCCCCCCCcEEEecCCchh
Q 009873          228 AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIK-SDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGS  299 (523)
Q Consensus       228 ~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~-~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~t  299 (523)
                      .+.+.|++|++++.|++|+.+++      +|.||.+.+ .+|+   .+.+.+         +.||||+|+++.
T Consensus       167 ~a~~~gv~i~~~~~v~~L~~~~g------~v~Gv~~~~~~~G~---~~~i~A---------~~VVlATGG~~~  221 (660)
T 2bs2_A          167 ECLKLGVSIQDRKEAIALIHQDG------KCYGAVVRDLVTGD---IIAYVA---------KGTLIATGGYGR  221 (660)
T ss_dssp             HHHHHTCEEECSEEEEEEEEETT------EEEEEEEEETTTCC---EEEEEC---------SEEEECCCCCGG
T ss_pred             HHHhCCCEEEECcEEEEEEecCC------EEEEEEEEECCCCc---EEEEEc---------CEEEEccCcchh
Confidence            45567999999999999998765      999999876 4576   667886         999999999874

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=99.40  E-value=6.9e-13  Score=141.44  Aligned_cols=59  Identities=14%  Similarity=0.180  Sum_probs=47.3

Q ss_pred             hhCCCCCeEEEeccEEEEEEEcC-CCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchh-HHHH
Q 009873          227 EAGNPKNLVVLLNATVNNIIFSN-NGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGS-PQLL  303 (523)
Q Consensus       227 ~~~~~~g~~i~~~~~V~~l~~~~-~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~t-p~lL  303 (523)
                      ..+++.|++|+++++|++|+.++ +      +|+||++.+.+|+   ..++.+         +.||||+|++.. +.++
T Consensus       263 ~~~~~~gv~i~~~t~v~~l~~~~~g------~v~GV~~~~~~G~---~~~i~A---------~~VVlAtGg~~~~~~~~  323 (572)
T 1d4d_A          263 DNAVKRGTDIRLNSRVVRILEDASG------KVTGVLVKGEYTG---YYVIKA---------DAVVIAAGGFAKNNERV  323 (572)
T ss_dssp             HHHHHTTCEEESSEEEEEEEEC--C------CEEEEEEEETTTE---EEEEEC---------SEEEECCCCCTTCHHHH
T ss_pred             HHHHHcCCeEEecCEEEEEEECCCC------eEEEEEEEeCCCc---EEEEEc---------CEEEEeCCCCccCHHHH
Confidence            35556799999999999999877 5      8999999875676   667886         999999999975 4444

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=99.38  E-value=1.1e-12  Score=140.08  Aligned_cols=56  Identities=11%  Similarity=0.170  Sum_probs=45.4

Q ss_pred             hhCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEe-cCCCCCceeEEEecCCCCCCCCCcEEEecCCchh
Q 009873          227 EAGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIK-SDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGS  299 (523)
Q Consensus       227 ~~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~-~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~t  299 (523)
                      ..+.+.|++|++++.|++|+.++++     ++.||.+.+ .+|+   .+++.+         +.||||+|+++.
T Consensus       151 ~~~~~~gv~i~~~~~v~~L~~~~~g-----~v~Gv~~~~~~~g~---~~~i~A---------~~VVlAtGg~~~  207 (588)
T 2wdq_A          151 QQNLKNHTTIFSEWYALDLVKNQDG-----AVVGCTALCIETGE---VVYFKA---------RATVLATGGAGR  207 (588)
T ss_dssp             HHHHHTTCEEEETEEEEEEEECTTS-----CEEEEEEEETTTCC---EEEEEE---------EEEEECCCCCGG
T ss_pred             HHHHhCCCEEEeCcEEEEEEECCCC-----EEEEEEEEEcCCCe---EEEEEc---------CEEEECCCCCcc
Confidence            3445679999999999999997332     899999876 4576   677887         999999999865

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=99.35  E-value=2.7e-12  Score=134.92  Aligned_cols=57  Identities=19%  Similarity=0.149  Sum_probs=40.2

Q ss_pred             hhCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHh
Q 009873          227 EAGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLL  305 (523)
Q Consensus       227 ~~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~  305 (523)
                      +.+++.|++|++++.|++|+.+++      +++||++.+  |+     ++.+         +.||.+++...+.+.|+-
T Consensus       229 ~~~~~~Gg~I~~~~~V~~I~~~~~------~~~gV~~~~--g~-----~~~a---------d~VV~~a~~~~~~~~Ll~  285 (501)
T 4dgk_A          229 KLFQDLGGEVVLNARVSHMETTGN------KIEAVHLED--GR-----RFLT---------QAVASNADVVHTYRDLLS  285 (501)
T ss_dssp             HHHHHTTCEEECSCCEEEEEEETT------EEEEEEETT--SC-----EEEC---------SCEEECCC----------
T ss_pred             HHHHHhCCceeeecceeEEEeeCC------eEEEEEecC--Cc-----EEEc---------CEEEECCCHHHHHHHhcc
Confidence            356788999999999999999988      999998754  66     4666         999999999888776664

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=99.34  E-value=2.5e-12  Score=135.93  Aligned_cols=35  Identities=31%  Similarity=0.642  Sum_probs=33.0

Q ss_pred             CCcccEEEECCCCchHHHHhhhhccCeeEEEecCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSDNFSVLLVERGG   85 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Laeg~~VlvlE~G~   85 (523)
                      +.+|||||||||++|+++|++|++|++|+||||+.
T Consensus         6 ~~~~DVvVVG~G~AGl~aAl~la~G~~V~vlEk~~   40 (540)
T 1chu_A            6 EHSCDVLIIGSGAAGLSLALRLADQHQVIVLSKGP   40 (540)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHTTTSCEEEECSSC
T ss_pred             CCCCCEEEECccHHHHHHHHHHhcCCcEEEEECCC
Confidence            45799999999999999999999999999999997

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=99.30  E-value=4.1e-11  Score=128.10  Aligned_cols=56  Identities=13%  Similarity=0.255  Sum_probs=45.1

Q ss_pred             hhCCCCC-eEEEeccEEEEEEEcCCCCCCCceeeEEEEEe-cCCCCCceeEEEecCCCCCCCCCcEEEecCCchhH
Q 009873          227 EAGNPKN-LVVLLNATVNNIIFSNNGKANESRAHGIRFIK-SDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSP  300 (523)
Q Consensus       227 ~~~~~~g-~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~-~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp  300 (523)
                      ..+.+.+ ++|++++.|++|+.+++      +|.||.+.+ .+|+   .+++.+         +.||||+|+++..
T Consensus       142 ~~~~~~gnv~i~~~~~v~~l~~~~g------~v~Gv~~~~~~~G~---~~~i~A---------~~VVlAtGg~s~~  199 (602)
T 1kf6_A          142 QTSLQFPQIQRFDEHFVLDILVDDG------HVRGLVAMNMMEGT---LVQIRA---------NAVVMATGGAGRV  199 (602)
T ss_dssp             HHHTTCTTEEEEETEEEEEEEEETT------EEEEEEEEETTTTE---EEEEEC---------SCEEECCCCCGGG
T ss_pred             HHHHhCCCcEEEeCCEEEEEEEeCC------EEEEEEEEEcCCCc---EEEEEc---------CeEEECCCCCccc
Confidence            3445555 99999999999999876      899998876 4566   567886         8999999998654

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=99.28  E-value=1.1e-11  Score=128.29  Aligned_cols=35  Identities=34%  Similarity=0.655  Sum_probs=32.2

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      ..+|||||||||++|+++|+.|++ |.+|+||||.+
T Consensus        24 ~~~~dVvIIGgG~aGl~aA~~la~~G~~V~llEk~~   59 (447)
T 2i0z_A           24 AMHYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGN   59 (447)
T ss_dssp             -CCCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             cCCCCEEEECCcHHHHHHHHHHHHCCCCEEEEECCC
Confidence            356999999999999999999999 99999999986

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=99.26  E-value=1.6e-11  Score=130.48  Aligned_cols=63  Identities=17%  Similarity=0.221  Sum_probs=51.8

Q ss_pred             hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEec-CCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHhh
Q 009873          228 AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKS-DGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLS  306 (523)
Q Consensus       228 ~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~-~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~S  306 (523)
                      .+.+.|++|+++++|++|..+++      ++.||++.+. .|+   ...+.+         +.||+|+|++ +..++...
T Consensus       179 ~a~~~G~~i~~~~~V~~l~~~~g------~v~gV~~~d~~tg~---~~~i~A---------~~VV~AaG~~-s~~l~~~~  239 (561)
T 3da1_A          179 EAVARGAVALNYMKVESFIYDQG------KVVGVVAKDRLTDT---THTIYA---------KKVVNAAGPW-VDTLREKD  239 (561)
T ss_dssp             HHHHTTCEEEESEEEEEEEEETT------EEEEEEEEETTTCC---EEEEEE---------EEEEECCGGG-HHHHHHTT
T ss_pred             HHHHcCCEEEcCCEEEEEEEcCC------eEEEEEEEEcCCCc---eEEEEC---------CEEEECCCcc-hHHHHHhc
Confidence            55678999999999999999877      8999999873 355   567887         9999999985 78887776


Q ss_pred             CCC
Q 009873          307 GIG  309 (523)
Q Consensus       307 Gig  309 (523)
                      |+.
T Consensus       240 g~~  242 (561)
T 3da1_A          240 RSK  242 (561)
T ss_dssp             TCC
T ss_pred             CCC
Confidence            654

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=99.25  E-value=9.5e-12  Score=124.96  Aligned_cols=61  Identities=13%  Similarity=0.106  Sum_probs=47.0

Q ss_pred             hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHhh-
Q 009873          228 AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLS-  306 (523)
Q Consensus       228 ~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~S-  306 (523)
                      .+++.|++|+++++|++|..+++      .+..|..  .+|+   ..++.+         +.||+|+|++ |+.|+... 
T Consensus       159 ~~~~~Gv~i~~~~~v~~i~~~~~------~~~~v~~--~~g~---~~~~~a---------~~VV~A~G~~-s~~l~~~~~  217 (369)
T 3dme_A          159 DAESDGAQLVFHTPLIAGRVRPE------GGFELDF--GGAE---PMTLSC---------RVLINAAGLH-APGLARRIE  217 (369)
T ss_dssp             HHHHTTCEEECSCCEEEEEECTT------SSEEEEE--CTTS---CEEEEE---------EEEEECCGGG-HHHHHHTEE
T ss_pred             HHHHCCCEEECCCEEEEEEEcCC------ceEEEEE--CCCc---eeEEEe---------CEEEECCCcc-hHHHHHHhc
Confidence            56678999999999999998876      3334544  3465   566887         9999999985 88888777 


Q ss_pred             CCC
Q 009873          307 GIG  309 (523)
Q Consensus       307 Gig  309 (523)
                      |+.
T Consensus       218 g~~  220 (369)
T 3dme_A          218 GIP  220 (369)
T ss_dssp             TSC
T ss_pred             CCC
Confidence            764

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=99.24  E-value=1.3e-11  Score=132.80  Aligned_cols=52  Identities=10%  Similarity=0.144  Sum_probs=42.6

Q ss_pred             CeEEEeccEEEEEEEcCCCCCCCceeeEEEEEe-cCCCCCceeEEEecCCCCCCCCCcEEEecCCchh
Q 009873          233 NLVVLLNATVNNIIFSNNGKANESRAHGIRFIK-SDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGS  299 (523)
Q Consensus       233 g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~-~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~t  299 (523)
                      |++|++++.|++|+.++++.+   +|.||.+.+ .+|+   .+.+.+         +.||||+|+++.
T Consensus       182 gV~i~~~~~v~dLi~~~~~~g---~v~Gv~~~~~~~g~---~~~i~A---------k~VVLATGG~g~  234 (662)
T 3gyx_A          182 QDRIIERIFIVKLLLDKNTPN---RIAGAVGFNLRANE---VHIFKA---------NAMVVACGGAVN  234 (662)
T ss_dssp             TTTEECSEEECCCEECSSSTT---BEEEEEEEESSSSC---EEEEEC---------SEEEECCCCBCS
T ss_pred             CcEEEEceEEEEEEEeCCccc---eEEEEEEEEcCCCc---EEEEEe---------CEEEECCCcccc
Confidence            999999999999999865111   899998876 3466   677886         999999999873

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=99.23  E-value=2.9e-11  Score=122.12  Aligned_cols=36  Identities=31%  Similarity=0.449  Sum_probs=33.1

Q ss_pred             cCCcccEEEECCCCchHHHHhhhhccCeeEEEecCC
Q 009873           50 AGKSFDYIVVGGGTTGCPLAATLSDNFSVLLVERGG   85 (523)
Q Consensus        50 ~~~~~DvIIVGsG~aG~~~A~~Laeg~~VlvlE~G~   85 (523)
                      ...++||||||||++|+++|++|++|++|+||||++
T Consensus         6 ~~~~~dv~IIGaGi~Gls~A~~La~G~~V~vlE~~~   41 (381)
T 3nyc_A            6 HPIEADYLVIGAGIAGASTGYWLSAHGRVVVLEREA   41 (381)
T ss_dssp             EEEECSEEEECCSHHHHHHHHHHTTTSCEEEECSSS
T ss_pred             CCCcCCEEEECCcHHHHHHHHHHhCCCCEEEEECCC
Confidence            345789999999999999999999999999999985

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=99.22  E-value=1.3e-10  Score=123.72  Aligned_cols=63  Identities=10%  Similarity=0.100  Sum_probs=50.2

Q ss_pred             hhCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEec-CCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHh
Q 009873          227 EAGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKS-DGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLL  305 (523)
Q Consensus       227 ~~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~-~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~  305 (523)
                      ..+.+.|++|+++++|++|..+++      ++.||++.+. .|+   ..++.+         +.||+|||++ +..++..
T Consensus       196 ~~a~~~Ga~i~~~t~V~~l~~~~~------~v~gV~~~d~~tg~---~~~i~A---------~~VV~AaG~w-s~~l~~~  256 (571)
T 2rgh_A          196 KKAAEDGAYLVSKMKAVGFLYEGD------QIVGVKARDLLTDE---VIEIKA---------KLVINTSGPW-VDKVRNL  256 (571)
T ss_dssp             HHHHHTTCEEESSEEEEEEEEETT------EEEEEEEEETTTCC---EEEEEB---------SCEEECCGGG-HHHHHTT
T ss_pred             HHHHHcCCeEEeccEEEEEEEeCC------EEEEEEEEEcCCCC---EEEEEc---------CEEEECCChh-HHHHHHh
Confidence            355678999999999999999876      8999998864 354   457887         9999999986 7777655


Q ss_pred             hCC
Q 009873          306 SGI  308 (523)
Q Consensus       306 SGi  308 (523)
                      .|+
T Consensus       257 ~g~  259 (571)
T 2rgh_A          257 NFT  259 (571)
T ss_dssp             CCS
T ss_pred             hcc
Confidence            443

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.17  E-value=4.6e-11  Score=120.82  Aligned_cols=35  Identities=26%  Similarity=0.459  Sum_probs=32.7

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      ..++||||||||++|+++|++|++ |++|+||||+.
T Consensus         3 ~~~~dVvIIGgGi~Gl~~A~~La~~G~~V~lle~~~   38 (382)
T 1y56_B            3 PEKSEIVVIGGGIVGVTIAHELAKRGEEVTVIEKRF   38 (382)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            457999999999999999999999 99999999985

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=99.17  E-value=9e-11  Score=126.62  Aligned_cols=57  Identities=14%  Similarity=0.067  Sum_probs=44.0

Q ss_pred             hCCCC-Ce-EEEeccEEEEEEEcCCCCCCCceeeEEEEEe-cCCCCCceeEEEecCCCCCCCCCcEEEecCCchh
Q 009873          228 AGNPK-NL-VVLLNATVNNIIFSNNGKANESRAHGIRFIK-SDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGS  299 (523)
Q Consensus       228 ~~~~~-g~-~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~-~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~t  299 (523)
                      .+++. |+ +|++++.|++|+.++++.+   +|+||.+.+ .+|+   .+.+.+         +.||||+|+++.
T Consensus       160 ~~~~~~gv~~i~~~~~v~~L~~~~~~~g---~v~Gv~~~~~~~g~---~~~i~A---------~~VVlAtGG~~~  219 (643)
T 1jnr_A          160 AAKMAVGEENIYERVFIFELLKDNNDPN---AVAGAVGFSVREPK---FYVFKA---------KAVILATGGATL  219 (643)
T ss_dssp             HHHHHHCGGGEECSEEEEEEEECTTCTT---BEEEEEEEESSSSC---EEEEEC---------SEEEECCCCBCS
T ss_pred             HHHhcCCCcEEEecCEEEEEEEcCCccc---eeEEEEEEEecCCc---EEEEEc---------CEEEECCCcccc
Confidence            34444 89 9999999999998764111   899998865 4566   667876         999999999875

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=99.13  E-value=4.9e-10  Score=117.58  Aligned_cols=57  Identities=12%  Similarity=-0.027  Sum_probs=45.2

Q ss_pred             hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEe-cCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHH
Q 009873          228 AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIK-SDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLL  304 (523)
Q Consensus       228 ~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~-~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl  304 (523)
                      .+.+.|++|+++++|++|..++       ++.+|++.+ .+|+   ..++.+         +.||+|+|++ +..++.
T Consensus       158 ~a~~~Gv~i~~~~~V~~l~~~~-------~~~~V~~~d~~~G~---~~~i~A---------~~VV~AtG~~-s~~l~~  215 (501)
T 2qcu_A          158 MVVRKGGEVLTRTRATSARREN-------GLWIVEAEDIDTGK---KYSWQA---------RGLVNATGPW-VKQFFD  215 (501)
T ss_dssp             HHHHTTCEEECSEEEEEEEEET-------TEEEEEEEETTTCC---EEEEEE---------SCEEECCGGG-HHHHHH
T ss_pred             HHHHcCCEEEcCcEEEEEEEeC-------CEEEEEEEECCCCC---EEEEEC---------CEEEECCChh-HHHHHH
Confidence            5567799999999999999865       477888875 3466   567887         9999999986 666654

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=99.12  E-value=8.1e-10  Score=112.45  Aligned_cols=57  Identities=21%  Similarity=0.354  Sum_probs=44.4

Q ss_pred             hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHhhC
Q 009873          228 AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSG  307 (523)
Q Consensus       228 ~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~SG  307 (523)
                      .+++.|++++++++|++|..+++      ++.+|++.  +|.      +.+         +.||+|+|+. ++.++...|
T Consensus       183 ~~~~~g~~i~~~~~v~~i~~~~~------~~~~v~~~--~g~------~~a---------~~vV~a~G~~-s~~l~~~~g  238 (405)
T 2gag_B          183 KANEMGVDIIQNCEVTGFIKDGE------KVTGVKTT--RGT------IHA---------GKVALAGAGH-SSVLAEMAG  238 (405)
T ss_dssp             HHHHTTCEEECSCCEEEEEESSS------BEEEEEET--TCC------EEE---------EEEEECCGGG-HHHHHHHHT
T ss_pred             HHHHCCCEEEcCCeEEEEEEeCC------EEEEEEeC--Cce------EEC---------CEEEECCchh-HHHHHHHcC
Confidence            55668999999999999998766      77787653  344      777         9999999985 667766666


Q ss_pred             C
Q 009873          308 I  308 (523)
Q Consensus       308 i  308 (523)
                      +
T Consensus       239 ~  239 (405)
T 2gag_B          239 F  239 (405)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=99.11  E-value=5.7e-11  Score=121.32  Aligned_cols=37  Identities=19%  Similarity=0.396  Sum_probs=31.2

Q ss_pred             ccCCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           49 VAGKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        49 ~~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      ++..+|||||||||++|+++|+.|++ |++|+|||+++
T Consensus        23 M~~~~~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~   60 (417)
T 3v76_A           23 MVAEKQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHAR   60 (417)
T ss_dssp             -----CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             ccCCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            45668999999999999999999999 99999999987

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=99.10  E-value=5.3e-10  Score=113.67  Aligned_cols=34  Identities=38%  Similarity=0.660  Sum_probs=32.2

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .++||||||||++|+++|+.|++ |++|+||||+.
T Consensus         3 ~~~DVvIIGaG~~Gl~~A~~La~~G~~V~vlE~~~   37 (397)
T 2oln_A            3 ESYDVVVVGGGPVGLATAWQVAERGHRVLVLERHT   37 (397)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            46899999999999999999999 99999999986

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=99.08  E-value=3.9e-10  Score=122.79  Aligned_cols=34  Identities=21%  Similarity=0.318  Sum_probs=32.0

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      ..+||||||||++|+++|++|++ |++|+||||..
T Consensus       271 ~~~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~~  305 (676)
T 3ps9_A          271 SKREAAIIGGGIASALLSLALLRRGWQVTLYCADE  305 (676)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            45999999999999999999999 99999999975

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=99.04  E-value=2.3e-10  Score=118.05  Aligned_cols=37  Identities=30%  Similarity=0.450  Sum_probs=33.6

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-cC-eeEEEecCCCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-NF-SVLLVERGGSP   87 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~-~VlvlE~G~~~   87 (523)
                      ..+|||||||||++|+++|++|++ |+ +|+||||+...
T Consensus         4 ~~~~dVvIIGgG~aGlsaA~~La~~G~~~V~vlE~~~~~   42 (438)
T 3dje_A            4 TKSSSLLIVGAGTWGTSTALHLARRGYTNVTVLDPYPVP   42 (438)
T ss_dssp             CTTSCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSCSS
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCCCcEEEEeCCCCC
Confidence            457999999999999999999999 89 99999998743

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=99.03  E-value=2.2e-10  Score=119.06  Aligned_cols=30  Identities=20%  Similarity=0.365  Sum_probs=29.2

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERG   84 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G   84 (523)
                      ||||||||++|+++|++|++ |++|+||||+
T Consensus         1 DVvVIG~G~AGl~aA~~la~~G~~V~viek~   31 (472)
T 2e5v_A            1 MIYIIGSGIAGLSAGVALRRAGKKVTLISKR   31 (472)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeCC
Confidence            89999999999999999998 9999999998

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=99.03  E-value=3.1e-10  Score=123.73  Aligned_cols=35  Identities=23%  Similarity=0.267  Sum_probs=32.6

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      ..++||||||||++|+++|++|++ |++|+||||+.
T Consensus       262 ~~~~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~~  297 (689)
T 3pvc_A          262 TRCDDIAIIGGGIVSALTALALQRRGAVVTLYCADA  297 (689)
T ss_dssp             SCCSSEEEECCSHHHHHHHHHHHTTTCCEEEEESSS
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            456999999999999999999999 99999999985

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=99.02  E-value=1.6e-09  Score=104.90  Aligned_cols=34  Identities=32%  Similarity=0.503  Sum_probs=31.8

Q ss_pred             CcccEEEECCCCchHHHHhhhhc--cCeeEEEecCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD--NFSVLLVERGG   85 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae--g~~VlvlE~G~   85 (523)
                      .+|||||||+|++|+++|+.|++  |.+|+||||..
T Consensus        38 ~~~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~   73 (284)
T 1rp0_A           38 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSV   73 (284)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSS
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            56899999999999999999997  79999999986

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=99.01  E-value=5.4e-10  Score=115.55  Aligned_cols=33  Identities=45%  Similarity=0.659  Sum_probs=31.2

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-c-CeeEEEecC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-N-FSVLLVERG   84 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g-~~VlvlE~G   84 (523)
                      .++||||||||++|+++|++|++ | .+|+||||.
T Consensus        22 ~~~dVvIIGgGiaGls~A~~La~~G~~~V~vlE~~   56 (448)
T 3axb_A           22 PRFDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDAG   56 (448)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHHHCSCEEEEESS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCCcEEEEccC
Confidence            57999999999999999999999 8 999999993

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=99.01  E-value=7.8e-10  Score=123.18  Aligned_cols=57  Identities=21%  Similarity=0.218  Sum_probs=44.6

Q ss_pred             hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHhhC
Q 009873          228 AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSG  307 (523)
Q Consensus       228 ~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~SG  307 (523)
                      .+++.|++|+++++|++|..+++      ++.+|++.  +|      ++.+         +.||+|+|++ ++.++...|
T Consensus       160 ~a~~~Gv~i~~~t~V~~i~~~~~------~v~~V~t~--~G------~i~A---------d~VV~AaG~~-s~~l~~~~g  215 (830)
T 1pj5_A          160 RTESAGVTYRGSTTVTGIEQSGG------RVTGVQTA--DG------VIPA---------DIVVSCAGFW-GAKIGAMIG  215 (830)
T ss_dssp             HHHHTTCEEECSCCEEEEEEETT------EEEEEEET--TE------EEEC---------SEEEECCGGG-HHHHHHTTT
T ss_pred             HHHHcCCEEECCceEEEEEEeCC------EEEEEEEC--Cc------EEEC---------CEEEECCccc-hHHHHHHhC
Confidence            55678999999999999998776      78887652  23      3776         9999999986 677766665


Q ss_pred             C
Q 009873          308 I  308 (523)
Q Consensus       308 i  308 (523)
                      +
T Consensus       216 ~  216 (830)
T 1pj5_A          216 M  216 (830)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=98.99  E-value=3.1e-10  Score=114.63  Aligned_cols=37  Identities=30%  Similarity=0.555  Sum_probs=33.6

Q ss_pred             ccCCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           49 VAGKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        49 ~~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      ..+.+|||||||||++|+++|++|++ |++|+|||++.
T Consensus        13 ~~~~~~dvvIIGgG~~Gl~~A~~La~~G~~V~llE~~~   50 (382)
T 1ryi_A           13 AMKRHYEAVVIGGGIIGSAIAYYLAKENKNTALFESGT   50 (382)
T ss_dssp             -CCSEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             ccCCCCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence            34567999999999999999999999 99999999985

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=98.96  E-value=1.6e-09  Score=113.79  Aligned_cols=36  Identities=31%  Similarity=0.421  Sum_probs=33.2

Q ss_pred             cCCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           50 AGKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        50 ~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      ...++||||||||++|+++|+.|++ |++|+||||+.
T Consensus       104 ~~~~~DVVIVGgGpaGL~aA~~La~~G~kV~VlEr~~  140 (549)
T 3nlc_A          104 ENLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGK  140 (549)
T ss_dssp             TTCCCCCEEECCSHHHHHHHHHHHHTTCCCEEECSSC
T ss_pred             cCCCCCEEEECcCHHHHHHHHHHHHCCCeEEEEEccC
Confidence            3456899999999999999999999 99999999996

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=98.96  E-value=1.6e-09  Score=109.69  Aligned_cols=51  Identities=14%  Similarity=0.157  Sum_probs=41.3

Q ss_pred             hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCc
Q 009873          228 AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGAL  297 (523)
Q Consensus       228 ~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~  297 (523)
                      .+.+.|++++++++|+.+..+++      ++++|.... +++   ..++.+         +.||-|.|.-
T Consensus       111 ~a~~~G~~~~~~~~v~~~~~~~~------~~~~v~~~~-~~~---~~~~~a---------~~vIgAdG~~  161 (397)
T 3oz2_A          111 LAAKAGADVWVKSPALGVIKENG------KVAGAKIRH-NNE---IVDVRA---------KMVIAADGFE  161 (397)
T ss_dssp             HHHHHTCEEESSCCEEEEEEETT------EEEEEEEEE-TTE---EEEEEE---------EEEEECCCTT
T ss_pred             HHHhcCcEEeeeeeeeeeeeccc------eeeeeeecc-ccc---ceEEEE---------eEEEeCCccc
Confidence            55678999999999999999887      898888765 455   567887         8888888863

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=98.93  E-value=1.6e-09  Score=110.03  Aligned_cols=33  Identities=30%  Similarity=0.442  Sum_probs=31.7

Q ss_pred             cccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           53 SFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        53 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      +|||||||+|++|+++|+.|++ |.+|+||||++
T Consensus         4 ~~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~   37 (401)
T 2gqf_A            4 YSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGK   37 (401)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCCEEEECCcHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            6999999999999999999999 99999999986

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=98.93  E-value=3.7e-09  Score=103.75  Aligned_cols=35  Identities=31%  Similarity=0.510  Sum_probs=32.3

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc---cCeeEEEecCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD---NFSVLLVERGG   85 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae---g~~VlvlE~G~   85 (523)
                      ..+|||||||+|++|+++|+.|++   |++|+|||++.
T Consensus        77 ~~~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~  114 (344)
T 3jsk_A           77 HAETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGV  114 (344)
T ss_dssp             HHBCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSS
T ss_pred             cCcCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence            357999999999999999999998   79999999986

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=98.91  E-value=4.3e-09  Score=106.47  Aligned_cols=33  Identities=36%  Similarity=0.541  Sum_probs=31.7

Q ss_pred             cccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           53 SFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        53 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      +|||||||||++|+++|++|++ |++|+|||++.
T Consensus         3 ~~dvvIIGaG~~Gl~~A~~La~~G~~V~vie~~~   36 (389)
T 2gf3_A            3 HFDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFD   36 (389)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            6899999999999999999999 99999999986

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=98.89  E-value=3.6e-09  Score=108.44  Aligned_cols=54  Identities=20%  Similarity=0.147  Sum_probs=44.2

Q ss_pred             hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHH
Q 009873          228 AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLL  304 (523)
Q Consensus       228 ~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl  304 (523)
                      .+++.|++|++++.|++|..+++      +++||.+   +|+     ++.+         +.||+|+++..+.+||-
T Consensus       205 ~~~~~G~~i~~~~~V~~i~~~~~------~~~gv~~---~g~-----~~~a---------d~VV~a~~~~~~~~ll~  258 (425)
T 3ka7_A          205 VISANGGKIHTGQEVSKILIENG------KAAGIIA---DDR-----IHDA---------DLVISNLGHAATAVLCS  258 (425)
T ss_dssp             HHHHTTCEEECSCCEEEEEEETT------EEEEEEE---TTE-----EEEC---------SEEEECSCHHHHHHHTT
T ss_pred             HHHHcCCEEEECCceeEEEEECC------EEEEEEE---CCE-----EEEC---------CEEEECCCHHHHHHhcC
Confidence            55678999999999999999876      8888875   244     3676         99999999988887654

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=98.89  E-value=1.4e-09  Score=114.38  Aligned_cols=52  Identities=21%  Similarity=0.300  Sum_probs=44.9

Q ss_pred             hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCc
Q 009873          228 AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGAL  297 (523)
Q Consensus       228 ~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~  297 (523)
                      .+++.|++|+++++|++|..+++      ++.||.+.+.+|+   ..++.+         +.||.|+|..
T Consensus       120 ~a~~~Gv~i~~~~~V~~v~~~~~------~v~gv~~~~~dG~---~~~i~a---------d~VI~AdG~~  171 (512)
T 3e1t_A          120 NSERKGVDVRERHEVIDVLFEGE------RAVGVRYRNTEGV---ELMAHA---------RFIVDASGNR  171 (512)
T ss_dssp             HHHHTTCEEESSCEEEEEEEETT------EEEEEEEECSSSC---EEEEEE---------EEEEECCCTT
T ss_pred             HHHhCCCEEEcCCEEEEEEEECC------EEEEEEEEeCCCC---EEEEEc---------CEEEECCCcc
Confidence            45568999999999999999876      8999999877786   677887         9999999975

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=98.89  E-value=5.7e-09  Score=108.02  Aligned_cols=53  Identities=13%  Similarity=0.149  Sum_probs=43.3

Q ss_pred             hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEec-CCCCCceeEEEecCCCCCCCCCcEEEecCCch
Q 009873          228 AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKS-DGSSNHMHEAYLNKPGNSSTWGDVILSAGALG  298 (523)
Q Consensus       228 ~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~-~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~  298 (523)
                      .+.+.|++|+++++|+++..+++      +++||++.+. +|+   ..++.+         +.||.|+|+..
T Consensus       109 ~a~~~gv~i~~~~~v~~i~~~~~------~v~gv~~~~~~~G~---~~~~~a---------d~VV~AdG~~s  162 (453)
T 3atr_A          109 EAQDRGVEIWDLTTAMKPIFEDG------YVKGAVLFNRRTNE---ELTVYS---------KVVVEATGYSR  162 (453)
T ss_dssp             HHHHTTCEEESSEEEEEEEEETT------EEEEEEEEETTTTE---EEEEEC---------SEEEECCGGGC
T ss_pred             HHHHcCCEEEeCcEEEEEEEECC------EEEEEEEEEcCCCc---eEEEEc---------CEEEECcCCch
Confidence            44558999999999999998776      8999988764 565   567886         99999999753

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=98.87  E-value=3.5e-09  Score=106.49  Aligned_cols=34  Identities=21%  Similarity=0.480  Sum_probs=32.0

Q ss_pred             cccEEEECCCCchHHHHhhhhc-cCeeEEEecCCC
Q 009873           53 SFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGS   86 (523)
Q Consensus        53 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~   86 (523)
                      +|||||||||++|+++|++|++ |++|+||||+..
T Consensus         2 ~~dvvIIG~Gi~Gl~~A~~La~~G~~V~vle~~~~   36 (372)
T 2uzz_A            2 KYDLIIIGSGSVGAAAGYYATRAGLNVLMTDAHMP   36 (372)
T ss_dssp             CEEEEESCTTHHHHHHHHHHHHTTCCEEEECSSCS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence            5899999999999999999999 999999999863

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=98.82  E-value=3.5e-09  Score=108.40  Aligned_cols=34  Identities=29%  Similarity=0.554  Sum_probs=32.2

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .+|||||||||++|+++|+.|++ |.+|+||||..
T Consensus         4 ~~~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~   38 (421)
T 3nix_A            4 EKVDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQK   38 (421)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred             ccCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            46999999999999999999999 99999999986

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=98.74  E-value=1.1e-08  Score=108.82  Aligned_cols=51  Identities=14%  Similarity=0.118  Sum_probs=41.5

Q ss_pred             hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCc
Q 009873          228 AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGAL  297 (523)
Q Consensus       228 ~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~  297 (523)
                      .+++.|++++++++|++|..+++      .+.+|.+.+ +|+   ..++.+         +.||.|+|..
T Consensus       137 ~a~~~Gv~i~~g~~V~~v~~~~g------~~~~V~~~~-~G~---~~~i~A---------dlVV~AdG~~  187 (591)
T 3i3l_A          137 EARSRGITVHEETPVTDVDLSDP------DRVVLTVRR-GGE---SVTVES---------DFVIDAGGSG  187 (591)
T ss_dssp             HHHHTTCEEETTCCEEEEECCST------TCEEEEEEE-TTE---EEEEEE---------SEEEECCGGG
T ss_pred             HHHhCCCEEEeCCEEEEEEEcCC------CEEEEEEec-CCc---eEEEEc---------CEEEECCCCc
Confidence            55568999999999999998755      678888875 565   567887         9999999973

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=98.74  E-value=2.3e-08  Score=102.40  Aligned_cols=35  Identities=26%  Similarity=0.386  Sum_probs=32.2

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPFG   89 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~~   89 (523)
                      ||||||||++|+++|++|++ |++|+||||.+...+
T Consensus         2 dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~GG   37 (421)
T 3nrn_A            2 RAVVVGAGLGGLLAGAFLARNGHEIIVLEKSAMIGG   37 (421)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEEECSSSSSCT
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCc
Confidence            89999999999999999999 999999999875544

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=98.70  E-value=1.8e-08  Score=107.43  Aligned_cols=37  Identities=30%  Similarity=0.518  Sum_probs=32.8

Q ss_pred             cCCcccEEEECCCCchHHHHhhhhc-------cCeeEEEecCCC
Q 009873           50 AGKSFDYIVVGGGTTGCPLAATLSD-------NFSVLLVERGGS   86 (523)
Q Consensus        50 ~~~~~DvIIVGsG~aG~~~A~~Lae-------g~~VlvlE~G~~   86 (523)
                      +..+|||||||||++|+++|++|++       |++|+||||++.
T Consensus        32 ~~~~~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~   75 (584)
T 2gmh_A           32 FAEEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAH   75 (584)
T ss_dssp             CEEECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSS
T ss_pred             cccCCCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCC
Confidence            3456999999999999999999986       799999999963

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=98.70  E-value=4.3e-08  Score=95.63  Aligned_cols=35  Identities=26%  Similarity=0.410  Sum_probs=32.2

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc---cCeeEEEecCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD---NFSVLLVERGG   85 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae---g~~VlvlE~G~   85 (523)
                      ..+|||+|||+|++|+++|+.|++   |++|+|+|+..
T Consensus        63 ~~~~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~  100 (326)
T 2gjc_A           63 FAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSV  100 (326)
T ss_dssp             TTEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSS
T ss_pred             cCcCCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCc
Confidence            457899999999999999999987   69999999986

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=98.69  E-value=4.3e-08  Score=103.49  Aligned_cols=34  Identities=24%  Similarity=0.422  Sum_probs=32.0

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .+|||||||||.+|+.+|+.|++ |.+|+|||++.
T Consensus        26 ~~yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~   60 (637)
T 2zxi_A           26 DEFDVVVIGGGHAGIEAALAAARMGAKTAMFVLNA   60 (637)
T ss_dssp             GCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCCEEEEEecc
Confidence            47999999999999999999999 99999999984

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=98.66  E-value=5.6e-08  Score=103.02  Aligned_cols=35  Identities=29%  Similarity=0.484  Sum_probs=32.5

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      +.+|||||||||.+|+.+|+.|++ |.+|+|||++.
T Consensus        26 ~~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~   61 (651)
T 3ces_A           26 PDPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNI   61 (651)
T ss_dssp             SSCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred             CCcCCEEEECChHHHHHHHHHHHhCCCCEEEEeecc
Confidence            357999999999999999999999 99999999974

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=98.66  E-value=1.4e-07  Score=99.67  Aligned_cols=35  Identities=37%  Similarity=0.502  Sum_probs=32.8

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      ..++||||||||++|+++|+.|++ |.+|+||||.+
T Consensus         3 ~~~~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~   38 (535)
T 3ihg_A            3 DHEVDVLVVGAGLGGLSTAMFLARQGVRVLVVERRP   38 (535)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred             CccCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            357999999999999999999999 99999999986

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=98.64  E-value=5e-08  Score=100.35  Aligned_cols=41  Identities=29%  Similarity=0.533  Sum_probs=36.2

Q ss_pred             ccCCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCCC
Q 009873           49 VAGKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPFG   89 (523)
Q Consensus        49 ~~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~~   89 (523)
                      .+.++|||||||+|.+|+++|++|++ |++|+||||++..++
T Consensus        16 ~~~~~~dv~iiG~G~~g~~~a~~l~~~g~~v~~~e~~~~~Gg   57 (475)
T 3p1w_A           16 FQGEHYDVIILGTGLKECILSGLLSHYGKKILVLDRNPYYGG   57 (475)
T ss_dssp             -CCCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCG
T ss_pred             cccccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeccCCCCC
Confidence            34568999999999999999999999 999999999986554

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=98.63  E-value=1.7e-07  Score=98.01  Aligned_cols=38  Identities=32%  Similarity=0.341  Sum_probs=34.1

Q ss_pred             cccCCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           48 EVAGKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        48 ~~~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      ..+++++||||||+|++|+++|+.|++ |.+|+||||.+
T Consensus         6 ~~~~~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~   44 (500)
T 2qa1_A            6 HHHRSDAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLV   44 (500)
T ss_dssp             --CCSBCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCC
T ss_pred             CCccCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            345678999999999999999999999 99999999986

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=98.62  E-value=3.4e-08  Score=100.62  Aligned_cols=35  Identities=43%  Similarity=0.701  Sum_probs=32.0

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc---cCeeEEEecCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD---NFSVLLVERGG   85 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae---g~~VlvlE~G~   85 (523)
                      ..++||||||||++|+++|+.|++   |++|+|||++.
T Consensus        34 ~~~~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~~   71 (405)
T 3c4n_A           34 EEAFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGG   71 (405)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSC
T ss_pred             cCcCCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            456999999999999999999986   69999999985

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=98.61  E-value=1.3e-07  Score=88.50  Aligned_cols=33  Identities=24%  Similarity=0.392  Sum_probs=31.4

Q ss_pred             cccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           53 SFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        53 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      +|||||||+|++|+.+|..|++ |.+|+|||++.
T Consensus         3 ~~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~   36 (232)
T 2cul_A            3 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSL   36 (232)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCC
Confidence            6899999999999999999999 99999999984

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=98.59  E-value=3.2e-08  Score=98.27  Aligned_cols=32  Identities=25%  Similarity=0.390  Sum_probs=29.9

Q ss_pred             ccEEEECCCCchHHHHhhhhc----cCeeEEEecCC
Q 009873           54 FDYIVVGGGTTGCPLAATLSD----NFSVLLVERGG   85 (523)
Q Consensus        54 ~DvIIVGsG~aG~~~A~~Lae----g~~VlvlE~G~   85 (523)
                      +||+|||||++|+++|+.|++    |++|+|+||++
T Consensus         2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~   37 (342)
T 3qj4_A            2 AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKAD   37 (342)
T ss_dssp             EEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSS
T ss_pred             CcEEEECCcHHHHHHHHHHHhhccCCceEEEEECCC
Confidence            599999999999999999987    58999999986

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=98.59  E-value=1.1e-07  Score=96.73  Aligned_cols=39  Identities=21%  Similarity=0.210  Sum_probs=32.0

Q ss_pred             ccccCCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           47 KEVAGKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        47 ~~~~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      +....+.|||||||||++|+++|+.|++ |.+|+||||.+
T Consensus        17 ~~~~~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~   56 (407)
T 3rp8_A           17 NLYFQGHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVK   56 (407)
T ss_dssp             ------CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             cccCCCCCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            3445667999999999999999999999 99999999986

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=98.55  E-value=4.2e-08  Score=102.57  Aligned_cols=36  Identities=33%  Similarity=0.371  Sum_probs=33.2

Q ss_pred             cCCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           50 AGKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        50 ~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      ....+||||||||++|+++|..|++ |.+|+|||+.+
T Consensus        89 ~~~~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~  125 (497)
T 2bry_A           89 ACTNTKCLVVGAGPCGLRAAVELALLGARVVLVEKRI  125 (497)
T ss_dssp             TTTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCS
T ss_pred             ccCCCCEEEECccHHHHHHHHHHHHCCCeEEEEEecc
Confidence            3457899999999999999999999 99999999986

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=98.55  E-value=1.1e-07  Score=100.71  Aligned_cols=37  Identities=30%  Similarity=0.551  Sum_probs=32.2

Q ss_pred             ccCCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           49 VAGKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        49 ~~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .+..+|||||||||.+|+.+|+.|++ |.+|+|||+..
T Consensus        17 ~~~~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~   54 (641)
T 3cp8_A           17 RGSHMYDVIVVGAGHAGCEAALAVARGGLHCLLITSDL   54 (641)
T ss_dssp             ---CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred             cccCcCCEEEECccHHHHHHHHHHHHCCCcEEEEEecc
Confidence            34567999999999999999999999 99999999974

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=98.55  E-value=2.7e-07  Score=96.43  Aligned_cols=37  Identities=30%  Similarity=0.346  Sum_probs=32.6

Q ss_pred             ccCCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           49 VAGKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        49 ~~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      ..+.++||||||+|++|+++|+.|++ |.+|+||||.+
T Consensus         8 ~~~~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~   45 (499)
T 2qa2_A            8 HHRSDASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLP   45 (499)
T ss_dssp             ---CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCS
T ss_pred             ccCCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCC
Confidence            34568999999999999999999999 99999999986

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=98.50  E-value=9.5e-08  Score=101.44  Aligned_cols=36  Identities=33%  Similarity=0.478  Sum_probs=30.6

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGS   86 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~   86 (523)
                      ..+|||||||+|++|+++|+.|++ |.+|+||||.+.
T Consensus        47 ~~~~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~   83 (570)
T 3fmw_A           47 ALTTDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVE   83 (570)
T ss_dssp             ----CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSS
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCC
Confidence            457999999999999999999999 999999999863

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=98.50  E-value=7.7e-07  Score=87.20  Aligned_cols=62  Identities=19%  Similarity=0.339  Sum_probs=46.2

Q ss_pred             CCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEec-CCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHhhC
Q 009873          229 GNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKS-DGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSG  307 (523)
Q Consensus       229 ~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~-~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~SG  307 (523)
                      +.+.|++++++++|++|..+++      ++.+|++.+. +|+   ..++.+         +.||+|+|...++.+|..+|
T Consensus       200 l~~~gv~i~~~~~v~~i~~~~~------~v~~v~~~~~~~g~---~~~i~~---------D~vi~a~G~~p~~~~l~~~g  261 (319)
T 3cty_A          200 IKKRNIPYIMNAQVTEIVGDGK------KVTGVKYKDRTTGE---EKLIET---------DGVFIYVGLIPQTSFLKDSG  261 (319)
T ss_dssp             HHHTTCCEECSEEEEEEEESSS------SEEEEEEEETTTCC---EEEECC---------SEEEECCCEEECCGGGTTSC
T ss_pred             HhcCCcEEEcCCeEEEEecCCc------eEEEEEEEEcCCCc---eEEEec---------CEEEEeeCCccChHHHhhcc
Confidence            3468999999999999987654      7889988752 465   556776         99999999765555555444


Q ss_pred             C
Q 009873          308 I  308 (523)
Q Consensus       308 i  308 (523)
                      +
T Consensus       262 l  262 (319)
T 3cty_A          262 V  262 (319)
T ss_dssp             C
T ss_pred             c
Confidence            3

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=98.48  E-value=2.3e-07  Score=94.09  Aligned_cols=34  Identities=29%  Similarity=0.444  Sum_probs=32.1

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .++||||||||++|+++|+.|++ |.+|+||||.+
T Consensus         5 ~~~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~   39 (399)
T 2x3n_A            5 NHIDVLINGCGIGGAMLAYLLGRQGHRVVVVEQAR   39 (399)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence            46899999999999999999999 99999999986

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=98.48  E-value=4.9e-08  Score=98.94  Aligned_cols=33  Identities=21%  Similarity=0.413  Sum_probs=31.4

Q ss_pred             cccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           53 SFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        53 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      +|||||||||++|+++|+.|++ |.+|+||||.+
T Consensus         2 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~   35 (394)
T 1k0i_A            2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQT   35 (394)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred             CccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            5899999999999999999999 99999999986

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=98.47  E-value=4.8e-06  Score=81.28  Aligned_cols=62  Identities=18%  Similarity=0.224  Sum_probs=48.1

Q ss_pred             hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEe-cCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHhh
Q 009873          228 AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIK-SDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLS  306 (523)
Q Consensus       228 ~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~-~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~S  306 (523)
                      ..++.|+++++++.|+++..+ +      ++.+|++.+ .+|+   ..++.+         +.||+|+|...+..+|..+
T Consensus       199 ~~~~~gv~~~~~~~v~~i~~~-~------~~~~v~~~~~~~g~---~~~~~~---------D~vv~a~G~~p~~~~~~~~  259 (323)
T 3f8d_A          199 VKKKPNVEFVLNSVVKEIKGD-K------VVKQVVVENLKTGE---IKELNV---------NGVFIEIGFDPPTDFAKSN  259 (323)
T ss_dssp             HHTCTTEEEECSEEEEEEEES-S------SEEEEEEEETTTCC---EEEEEC---------SEEEECCCEECCHHHHHHT
T ss_pred             HHhCCCcEEEeCCEEEEEecc-C------ceeEEEEEECCCCc---eEEEEc---------CEEEEEECCCCChhHHhhc
Confidence            345669999999999999865 3      678888876 3366   566776         9999999987766777776


Q ss_pred             CC
Q 009873          307 GI  308 (523)
Q Consensus       307 Gi  308 (523)
                      |+
T Consensus       260 g~  261 (323)
T 3f8d_A          260 GI  261 (323)
T ss_dssp             TC
T ss_pred             Ce
Confidence            65

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=98.44  E-value=1.6e-07  Score=93.36  Aligned_cols=33  Identities=27%  Similarity=0.530  Sum_probs=31.5

Q ss_pred             cccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           53 SFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        53 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      +|||||||+|++|+++|..|++ |++|+|||+.+
T Consensus         3 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~   36 (357)
T 4a9w_A            3 SVDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEA   36 (357)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHSSCCEEEECCSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCC
Confidence            5899999999999999999999 99999999986

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=98.41  E-value=1.3e-06  Score=92.56  Aligned_cols=34  Identities=32%  Similarity=0.553  Sum_probs=32.3

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .++||||||||++|+++|+.|++ |.+|+||||.+
T Consensus        25 ~~~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~   59 (549)
T 2r0c_A           25 IETDVLILGGGPVGMALALDLAHRQVGHLVVEQTD   59 (549)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            57999999999999999999999 99999999986

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=98.41  E-value=1.3e-06  Score=88.44  Aligned_cols=34  Identities=32%  Similarity=0.373  Sum_probs=31.9

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      ..+||+|||||++|+++|+.|++ |.+|+|+||.+
T Consensus         4 ~~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~   38 (397)
T 2vou_A            4 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSP   38 (397)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            45899999999999999999999 99999999986

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=98.40  E-value=3.9e-07  Score=96.22  Aligned_cols=36  Identities=25%  Similarity=0.401  Sum_probs=32.3

Q ss_pred             cCCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           50 AGKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        50 ~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      ...++||||||||++|+.+|.+|++ |.+|+|||+++
T Consensus        18 ~~~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~   54 (549)
T 4ap3_A           18 GTTSYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAAS   54 (549)
T ss_dssp             --CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCCCCCEEEECchHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            3457999999999999999999999 99999999986

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=98.39  E-value=5.3e-07  Score=95.35  Aligned_cols=35  Identities=31%  Similarity=0.440  Sum_probs=32.8

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      ..++||||||||++|+++|.+|++ |.+|+|||+++
T Consensus        14 ~~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~   49 (542)
T 1w4x_A           14 PEEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAG   49 (542)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            457999999999999999999999 99999999986

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=98.38  E-value=5.5e-07  Score=94.94  Aligned_cols=34  Identities=18%  Similarity=0.386  Sum_probs=31.9

Q ss_pred             CcccEEEECCCCchHHHHhhhh-c-cCeeEEEecCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLS-D-NFSVLLVERGG   85 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~La-e-g~~VlvlE~G~   85 (523)
                      .++||||||||++|+.+|.+|+ + |.+|+|||+.+
T Consensus         7 ~~~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~   42 (540)
T 3gwf_A            7 HTVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKAD   42 (540)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCC
Confidence            4689999999999999999999 7 89999999986

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=98.37  E-value=1.3e-07  Score=89.77  Aligned_cols=35  Identities=20%  Similarity=0.398  Sum_probs=32.5

Q ss_pred             cccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCC
Q 009873           53 SFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSP   87 (523)
Q Consensus        53 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~   87 (523)
                      ++||+|||||++|+++|+.|++ |++|+||||.+.+
T Consensus         2 t~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~   37 (336)
T 3kkj_A            2 TVPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGS   37 (336)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence            5899999999999999999999 9999999998744

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=98.33  E-value=1.7e-06  Score=85.23  Aligned_cols=37  Identities=16%  Similarity=0.135  Sum_probs=32.0

Q ss_pred             ccCCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           49 VAGKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        49 ~~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .....+||||||||++|+++|+.|++ |++|+|||+.+
T Consensus        18 ~~~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~   55 (338)
T 3itj_A           18 GSHVHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMM   55 (338)
T ss_dssp             ---CEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSS
T ss_pred             CCCCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCC
Confidence            34567999999999999999999999 99999999964

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=98.31  E-value=2.6e-06  Score=88.14  Aligned_cols=34  Identities=32%  Similarity=0.514  Sum_probs=32.3

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-c-----CeeEEEecCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-N-----FSVLLVERGG   85 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g-----~~VlvlE~G~   85 (523)
                      ..|||||||+|++|+++|..|++ |     .+|+|||+.+
T Consensus        29 ~~~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~   68 (463)
T 3s5w_A           29 VVHDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQG   68 (463)
T ss_dssp             CEESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCC
Confidence            57999999999999999999999 8     8999999987

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=98.30  E-value=2.1e-06  Score=87.61  Aligned_cols=60  Identities=18%  Similarity=0.215  Sum_probs=48.6

Q ss_pred             hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHhhC
Q 009873          228 AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSG  307 (523)
Q Consensus       228 ~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~SG  307 (523)
                      ..++.|++|++++.|++|..+++      ++.+|+..+  |+     ++.+         +.||+|+|..-+..++..+|
T Consensus       203 ~l~~~GV~i~~~~~v~~i~~~~~------~v~~v~l~d--G~-----~i~a---------D~Vv~a~G~~p~~~l~~~~g  260 (415)
T 3lxd_A          203 EHRAHGVDLRTGAAMDCIEGDGT------KVTGVRMQD--GS-----VIPA---------DIVIVGIGIVPCVGALISAG  260 (415)
T ss_dssp             HHHHTTCEEEETCCEEEEEESSS------BEEEEEESS--SC-----EEEC---------SEEEECSCCEESCHHHHHTT
T ss_pred             HHHhCCCEEEECCEEEEEEecCC------cEEEEEeCC--CC-----EEEc---------CEEEECCCCccChHHHHhCC
Confidence            55678999999999999987765      788888743  65     4666         99999999887777887777


Q ss_pred             CC
Q 009873          308 IG  309 (523)
Q Consensus       308 ig  309 (523)
                      +.
T Consensus       261 l~  262 (415)
T 3lxd_A          261 AS  262 (415)
T ss_dssp             CC
T ss_pred             CC
Confidence            64

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=98.29  E-value=6.5e-06  Score=80.07  Aligned_cols=56  Identities=13%  Similarity=0.233  Sum_probs=44.4

Q ss_pred             CCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHH
Q 009873          229 GNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQL  302 (523)
Q Consensus       229 ~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~l  302 (523)
                      .++.|+++++++.|.+|..+++      ++.+|++...+|+   ..++.+         +.||+|+|...++.+
T Consensus       193 ~~~~gv~~~~~~~v~~i~~~~~------~~~~v~~~~~~g~---~~~~~~---------D~vv~a~G~~p~~~~  248 (315)
T 3r9u_A          193 KKNEKIELITSASVDEVYGDKM------GVAGVKVKLKDGS---IRDLNV---------PGIFTFVGLNVRNEI  248 (315)
T ss_dssp             HHCTTEEEECSCEEEEEEEETT------EEEEEEEECTTSC---EEEECC---------SCEEECSCEEECCGG
T ss_pred             HhcCCeEEEeCcEEEEEEcCCC------cEEEEEEEcCCCC---eEEeec---------CeEEEEEcCCCCchh
Confidence            3578999999999999988776      8899988854576   566776         999999997544433

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=98.29  E-value=2.4e-06  Score=86.52  Aligned_cols=35  Identities=26%  Similarity=0.437  Sum_probs=32.7

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      ..++||||||||++|+++|+.|++ |.+|+||||.+
T Consensus        24 ~~~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~   59 (398)
T 2xdo_A           24 LSDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDN   59 (398)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSS
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            356899999999999999999999 99999999986

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=98.26  E-value=6.6e-07  Score=87.96  Aligned_cols=34  Identities=29%  Similarity=0.327  Sum_probs=31.9

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      ..+||||||||++|+++|+.|++ |++|+|+|+.+
T Consensus         6 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~   40 (332)
T 3lzw_A            6 KVYDITIIGGGPVGLFTAFYGGMRQASVKIIESLP   40 (332)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             ccceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence            35899999999999999999999 89999999986

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=98.25  E-value=1.5e-06  Score=93.62  Aligned_cols=35  Identities=31%  Similarity=0.508  Sum_probs=32.5

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc--cCeeEEEecCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD--NFSVLLVERGG   85 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae--g~~VlvlE~G~   85 (523)
                      ..++||||||||++|+++|+.|++  |.+|+||||.+
T Consensus        30 ~~~~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~   66 (639)
T 2dkh_A           30 PSQVDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKE   66 (639)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSS
T ss_pred             CCCCcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            457999999999999999999998  79999999986

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=98.24  E-value=1.4e-06  Score=85.83  Aligned_cols=34  Identities=24%  Similarity=0.262  Sum_probs=32.0

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .++||||||||++|+++|+.|++ |++|+|+|+.+
T Consensus         4 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~   38 (335)
T 2zbw_A            4 DHTDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLP   38 (335)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CcCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            46899999999999999999998 99999999986

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=98.24  E-value=3.2e-06  Score=87.58  Aligned_cols=34  Identities=29%  Similarity=0.589  Sum_probs=31.7

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .+|||||||||++|+++|.+|++ |++|+||||.+
T Consensus         3 ~~~DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~   37 (466)
T 3l8k_A            3 LKYDVVVIGAGGAGYHGAFRLAKAKYNVLMADPKG   37 (466)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECTTS
T ss_pred             ccceEEEECCCHHHHHHHHHHHhCCCeEEEEECCC
Confidence            46999999999999999999999 99999999765

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=98.23  E-value=2.6e-06  Score=85.66  Aligned_cols=33  Identities=30%  Similarity=0.413  Sum_probs=31.6

Q ss_pred             cccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           53 SFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        53 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .+||||||||++|+++|+.|++ |.+|+||||..
T Consensus        11 ~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~   44 (379)
T 3alj_A           11 TRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSS   44 (379)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Confidence            5899999999999999999999 99999999986

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=98.21  E-value=6.8e-06  Score=85.03  Aligned_cols=33  Identities=12%  Similarity=0.293  Sum_probs=29.9

Q ss_pred             ccEEEECCCCchHHHHhhhhc----cCe---eEEEecCCC
Q 009873           54 FDYIVVGGGTTGCPLAATLSD----NFS---VLLVERGGS   86 (523)
Q Consensus        54 ~DvIIVGsG~aG~~~A~~Lae----g~~---VlvlE~G~~   86 (523)
                      +||+|||||++|+++|..|++    |.+   |+|+|+.+.
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~   42 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQAD   42 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSS
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCC
Confidence            699999999999999999986    688   999999863

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=98.20  E-value=5.5e-07  Score=87.99  Aligned_cols=35  Identities=31%  Similarity=0.556  Sum_probs=32.5

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      +.+|||||||||++|+++|.+|++ |++|+|+||+.
T Consensus         4 e~~yDvvIIG~GpAGl~aA~~l~~~g~~V~liE~~~   39 (312)
T 4gcm_A            4 EIDFDIAIIGAGPAGMTAAVYASRANLKTVMIERGI   39 (312)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Confidence            357999999999999999999999 99999999975

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=98.19  E-value=4.7e-06  Score=83.05  Aligned_cols=35  Identities=29%  Similarity=0.313  Sum_probs=32.1

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      ...+||||||+|++|+++|+.|++ |++|+|||+.+
T Consensus        12 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~   47 (360)
T 3ab1_A           12 HDMRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMP   47 (360)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            346999999999999999999998 99999999986

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=98.17  E-value=2.7e-06  Score=89.78  Aligned_cols=34  Identities=32%  Similarity=0.511  Sum_probs=32.1

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .++||||||||++|+.+|.+|++ |.+|+|||+++
T Consensus         8 ~~~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~   42 (545)
T 3uox_A            8 PALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGE   42 (545)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            46899999999999999999998 99999999986

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=98.16  E-value=6.9e-07  Score=93.66  Aligned_cols=39  Identities=33%  Similarity=0.490  Sum_probs=34.6

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc--cCeeEEEecCCCCCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD--NFSVLLVERGGSPFG   89 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae--g~~VlvlE~G~~~~~   89 (523)
                      +.++||||||||++|++||++|++  |++|+|||+.+..++
T Consensus         8 ~~~~DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~~~~GG   48 (513)
T 4gde_A            8 DISVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGG   48 (513)
T ss_dssp             SEEEEEEEECCSHHHHHHHHHHHHHCCSCEEEEESSSSCCG
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHhhCCCCEEEEECCCCCcC
Confidence            457999999999999999999986  799999999986544

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=98.15  E-value=7.6e-07  Score=86.71  Aligned_cols=34  Identities=24%  Similarity=0.385  Sum_probs=31.5

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      ++|||||||||++|++||++|++ |++|+|+|++.
T Consensus         5 ~~yDVvIIGaGpAGlsAA~~lar~g~~v~lie~~~   39 (304)
T 4fk1_A            5 KYIDCAVIGAGPAGLNASLVLGRARKQIALFDNNT   39 (304)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred             CCcCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            57999999999999999999998 99999999975

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=98.13  E-value=1.1e-06  Score=90.83  Aligned_cols=40  Identities=33%  Similarity=0.467  Sum_probs=35.8

Q ss_pred             cCCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCCC
Q 009873           50 AGKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPFG   89 (523)
Q Consensus        50 ~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~~   89 (523)
                      +..++||||||||.+|+++|..|++ |++|+||||.+..++
T Consensus         8 ~~~~~dvvVIGaG~~GL~aA~~La~~G~~V~vlE~~~~~GG   48 (453)
T 2bcg_G            8 IDTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGG   48 (453)
T ss_dssp             CCCBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCG
T ss_pred             ccccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCc
Confidence            3467999999999999999999999 999999999986554

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=98.12  E-value=9.8e-06  Score=83.40  Aligned_cols=36  Identities=33%  Similarity=0.468  Sum_probs=32.4

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-cC--eeEEEecCCCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-NF--SVLLVERGGSP   87 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g~--~VlvlE~G~~~   87 (523)
                      ..+||+|||||++|+++|..|++ |.  +|+|+|+.+..
T Consensus         5 ~~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~   43 (447)
T 2gv8_A            5 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSP   43 (447)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSS
T ss_pred             CCCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCC
Confidence            46899999999999999999999 88  99999998633

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=98.12  E-value=1.2e-05  Score=78.11  Aligned_cols=31  Identities=26%  Similarity=0.572  Sum_probs=29.8

Q ss_pred             ccEEEECCCCchHHHHhhhhc-cC-eeEEEecC
Q 009873           54 FDYIVVGGGTTGCPLAATLSD-NF-SVLLVERG   84 (523)
Q Consensus        54 ~DvIIVGsG~aG~~~A~~Lae-g~-~VlvlE~G   84 (523)
                      |||+|||+|++|+++|..|++ |+ +|+|||+.
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~   34 (311)
T 2q0l_A            2 IDCAIIGGGPAGLSAGLYATRGGVKNAVLFEKG   34 (311)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCSSEEEECSS
T ss_pred             ceEEEECccHHHHHHHHHHHHCCCCcEEEEcCC
Confidence            799999999999999999998 89 99999996

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=98.11  E-value=1.3e-06  Score=85.99  Aligned_cols=35  Identities=26%  Similarity=0.410  Sum_probs=32.1

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc---cCeeEEEecCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD---NFSVLLVERGG   85 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae---g~~VlvlE~G~   85 (523)
                      ..++||+|||||++|+++|++|++   |++|+|+||+.
T Consensus        63 ~~~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~  100 (326)
T 3fpz_A           63 FAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSV  100 (326)
T ss_dssp             TTEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSS
T ss_pred             ccCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCC
Confidence            457999999999999999999974   79999999986

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=98.11  E-value=2.4e-05  Score=79.41  Aligned_cols=60  Identities=13%  Similarity=0.244  Sum_probs=48.5

Q ss_pred             hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHhhC
Q 009873          228 AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSG  307 (523)
Q Consensus       228 ~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~SG  307 (523)
                      ..++.|+++++++.|++|..+++      ++.+|+..  +|+     ++.+         +.||+|+|..-+..++..+|
T Consensus       193 ~l~~~GV~i~~~~~v~~i~~~~~------~v~~V~~~--dG~-----~i~a---------D~Vv~a~G~~p~~~l~~~~g  250 (404)
T 3fg2_P          193 RHSGAGIRMHYGVRATEIAAEGD------RVTGVVLS--DGN-----TLPC---------DLVVVGVGVIPNVEIAAAAG  250 (404)
T ss_dssp             HHHHTTCEEECSCCEEEEEEETT------EEEEEEET--TSC-----EEEC---------SEEEECCCEEECCHHHHHTT
T ss_pred             HHHhCCcEEEECCEEEEEEecCC------cEEEEEeC--CCC-----EEEc---------CEEEECcCCccCHHHHHhCC
Confidence            55678999999999999988766      88888764  365     4666         99999999877777887777


Q ss_pred             CC
Q 009873          308 IG  309 (523)
Q Consensus       308 ig  309 (523)
                      +.
T Consensus       251 l~  252 (404)
T 3fg2_P          251 LP  252 (404)
T ss_dssp             CC
T ss_pred             CC
Confidence            64

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=98.11  E-value=1.3e-05  Score=87.79  Aligned_cols=38  Identities=21%  Similarity=0.277  Sum_probs=33.9

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPF   88 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~   88 (523)
                      ...+||||||||++|+++|+.|++ |++|+|||+++...
T Consensus       334 ~~~~~v~viG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~g  372 (776)
T 4gut_A          334 YHNKSVIIIGAGPAGLAAARQLHNFGIKVTVLEAKDRIG  372 (776)
T ss_dssp             GTSCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSC
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeccccee
Confidence            346899999999999999999999 99999999987443

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=98.08  E-value=1.2e-06  Score=85.56  Aligned_cols=34  Identities=18%  Similarity=0.262  Sum_probs=32.0

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      +.|||||||||++|+++|.+|++ |++|+|+|++.
T Consensus         3 ~~yDvvIIG~GpAGl~AA~~la~~g~~v~liE~~~   37 (314)
T 4a5l_A            3 NIHDVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFM   37 (314)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Confidence            46999999999999999999999 99999999975

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=98.07  E-value=1.1e-05  Score=78.54  Aligned_cols=31  Identities=23%  Similarity=0.431  Sum_probs=29.3

Q ss_pred             cccEEEECCCCchHHHHhhhhc-cCeeEEEec
Q 009873           53 SFDYIVVGGGTTGCPLAATLSD-NFSVLLVER   83 (523)
Q Consensus        53 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~   83 (523)
                      +|||||||+|++|+++|.+|++ |++|+|||+
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~li~~   32 (310)
T 1fl2_A            1 AYDVLIVGSGPAGAAAAIYSARKGIRTGLMGE   32 (310)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTTTCCEEEECS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeC
Confidence            4899999999999999999999 899999985

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=98.03  E-value=1.8e-06  Score=88.47  Aligned_cols=34  Identities=44%  Similarity=0.653  Sum_probs=31.6

Q ss_pred             ccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCC
Q 009873           54 FDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSP   87 (523)
Q Consensus        54 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~   87 (523)
                      |||||||||++|+++|++|++ |++|+|||+.+..
T Consensus         2 ~dVvVIGaG~aGl~aA~~L~~~G~~V~vlE~~~~~   36 (431)
T 3k7m_X            2 YDAIVVGGGFSGLKAARDLTNAGKKVLLLEGGERL   36 (431)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CCEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence            799999999999999999999 9999999997633

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=98.00  E-value=5.2e-05  Score=78.54  Aligned_cols=59  Identities=22%  Similarity=0.146  Sum_probs=44.3

Q ss_pred             hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHhhC
Q 009873          228 AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSG  307 (523)
Q Consensus       228 ~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~SG  307 (523)
                      ..++.|++++++++|++|..+++      ++. |+..  +|+     ++.+         +.||+|+|..-++.++..+|
T Consensus       211 ~l~~~GV~i~~~~~v~~i~~~~~------~v~-v~~~--~g~-----~i~a---------D~Vv~a~G~~p~~~l~~~~g  267 (472)
T 3iwa_A          211 DLEKNDVVVHTGEKVVRLEGENG------KVA-RVIT--DKR-----TLDA---------DLVILAAGVSPNTQLARDAG  267 (472)
T ss_dssp             HHHHTTCEEECSCCEEEEEESSS------BEE-EEEE--SSC-----EEEC---------SEEEECSCEEECCHHHHHHT
T ss_pred             HHHhcCCEEEeCCEEEEEEccCC------eEE-EEEe--CCC-----EEEc---------CEEEECCCCCcCHHHHHhCC
Confidence            55678999999999999987555      555 5543  355     4666         99999999876666777777


Q ss_pred             CC
Q 009873          308 IG  309 (523)
Q Consensus       308 ig  309 (523)
                      +.
T Consensus       268 l~  269 (472)
T 3iwa_A          268 LE  269 (472)
T ss_dssp             CC
T ss_pred             cc
Confidence            63

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=97.99  E-value=2.8e-06  Score=84.89  Aligned_cols=35  Identities=26%  Similarity=0.368  Sum_probs=32.8

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      ..++||||||+|++|+++|++|++ |++|+||||..
T Consensus         4 ~~~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~   39 (363)
T 1c0p_A            4 HSQKRVVVLGSGVIGLSSALILARKGYSVHILARDL   39 (363)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCEEEEEeccC
Confidence            457899999999999999999999 99999999986

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=97.96  E-value=3.8e-06  Score=83.50  Aligned_cols=31  Identities=16%  Similarity=0.300  Sum_probs=29.8

Q ss_pred             cEEEECCCCchHHHHhhhhc-c------CeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-N------FSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g------~~VlvlE~G~   85 (523)
                      ||||||||++|+++|++|++ |      .+|+|||++.
T Consensus         2 dVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~   39 (351)
T 3g3e_A            2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRF   39 (351)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSC
T ss_pred             cEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCC
Confidence            89999999999999999999 8      8999999986

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=97.95  E-value=2e-05  Score=82.97  Aligned_cols=34  Identities=32%  Similarity=0.524  Sum_probs=30.9

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-------------cCeeEEEecCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-------------NFSVLLVERGG   85 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-------------g~~VlvlE~G~   85 (523)
                      ..+||||||||++|+++|..|++             |.+|+|||+..
T Consensus         6 ~~~dVvIVGgG~aGl~aA~~La~~~~~~~~~~~~~~G~~V~liE~~~   52 (526)
T 2pyx_A            6 PITEIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSPKLNITLIESPD   52 (526)
T ss_dssp             CCCEEEEECCHHHHHHHHHHHHHHHHEETTEECSSCSCEEEEEECSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhhhccccccccCCCCCeEEEEeCCC
Confidence            46899999999999999999987             59999999975

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=97.92  E-value=2.6e-05  Score=81.83  Aligned_cols=35  Identities=20%  Similarity=0.373  Sum_probs=31.6

Q ss_pred             cCCcccEEEECCCCchHHHHhhhhc-cCeeEEEecC
Q 009873           50 AGKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERG   84 (523)
Q Consensus        50 ~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G   84 (523)
                      ....|||+|||||++|+++|..|++ |++|+|+|+.
T Consensus       209 ~~~~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~~  244 (521)
T 1hyu_A          209 KRDAYDVLIVGSGPAGAAAAVYSARKGIRTGLMGER  244 (521)
T ss_dssp             TSCCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             ccCcccEEEECCcHHHHHHHHHHHhCCCeEEEEECC
Confidence            3457999999999999999999999 9999999863

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=97.86  E-value=6.4e-06  Score=82.92  Aligned_cols=39  Identities=38%  Similarity=0.595  Sum_probs=34.8

Q ss_pred             cCCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCC
Q 009873           50 AGKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPF   88 (523)
Q Consensus        50 ~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~   88 (523)
                      ...++||+|||||++|+++|++|++ |++|+|||+.+..+
T Consensus        26 ~~~~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~G   65 (397)
T 3hdq_A           26 ESKGFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIG   65 (397)
T ss_dssp             CCCCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSS
T ss_pred             cCCCCCEEEECccHHHHHHHHHHHHCCCceEEEeccCCCC
Confidence            4568999999999999999999999 89999999987443

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=97.85  E-value=6.3e-06  Score=85.81  Aligned_cols=35  Identities=26%  Similarity=0.341  Sum_probs=32.4

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      ..+|||||||||++|+++|++|++ |++|+||||+.
T Consensus        24 ~~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~   59 (484)
T 3o0h_A           24 SFDFDLFVIGSGSGGVRAARLAGALGKRVAIAEEYR   59 (484)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHhCcCEEEEEeCCC
Confidence            457999999999999999999999 99999999953

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=97.83  E-value=7.3e-06  Score=82.03  Aligned_cols=36  Identities=36%  Similarity=0.536  Sum_probs=32.7

Q ss_pred             cccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCC
Q 009873           53 SFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPF   88 (523)
Q Consensus        53 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~   88 (523)
                      +|||+|||||++|+++|++|++ |++|+|+|+++..+
T Consensus         1 ~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~G   37 (367)
T 1i8t_A            1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIG   37 (367)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCC
Confidence            4799999999999999999999 89999999987443

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=97.81  E-value=4.7e-06  Score=86.95  Aligned_cols=34  Identities=29%  Similarity=0.521  Sum_probs=30.9

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .+|||||||||++|+++|.+|++ |++|+||||.+
T Consensus        24 ~~~dVvVIGgG~aGl~aA~~la~~G~~V~liEk~~   58 (491)
T 3urh_A           24 MAYDLIVIGSGPGGYVCAIKAAQLGMKVAVVEKRS   58 (491)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            46999999999999999999999 99999999975

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=97.81  E-value=6.4e-06  Score=85.12  Aligned_cols=36  Identities=25%  Similarity=0.325  Sum_probs=32.8

Q ss_pred             cccEEEECCCCchHHHHhhhhc-c------CeeEEEecCCCCC
Q 009873           53 SFDYIVVGGGTTGCPLAATLSD-N------FSVLLVERGGSPF   88 (523)
Q Consensus        53 ~~DvIIVGsG~aG~~~A~~Lae-g------~~VlvlE~G~~~~   88 (523)
                      .+||||||||++|+++|++|++ |      ++|+|||+.+...
T Consensus         5 ~~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~~~G   47 (470)
T 3i6d_A            5 KKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVG   47 (470)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSSSSC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCCCCC
Confidence            5899999999999999999999 8      9999999986443

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=97.79  E-value=1e-05  Score=82.01  Aligned_cols=39  Identities=33%  Similarity=0.463  Sum_probs=34.3

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc--cCeeEEEecCCCCCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD--NFSVLLVERGGSPFG   89 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae--g~~VlvlE~G~~~~~   89 (523)
                      ..++||||||||++|+++|++|++  |++|+|||+.+..++
T Consensus         5 ~~~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~GG   45 (399)
T 1v0j_A            5 TARFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIGG   45 (399)
T ss_dssp             CCSCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSSSG
T ss_pred             cccCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCCCC
Confidence            457999999999999999999987  699999999975543

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=97.76  E-value=9.5e-06  Score=85.17  Aligned_cols=38  Identities=21%  Similarity=0.378  Sum_probs=33.8

Q ss_pred             cccCCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           48 EVAGKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        48 ~~~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      ..+..+|||||||||++|+++|.+|++ |++|+||||.+
T Consensus        27 ~~~~~~~DVvVIGgGpaGl~aA~~la~~G~~V~liEk~~   65 (519)
T 3qfa_A           27 LPKSYDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVT   65 (519)
T ss_dssp             CCSSCSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred             cCcCCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeccC
Confidence            344567999999999999999999999 99999999964

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=97.76  E-value=1.1e-05  Score=83.90  Aligned_cols=34  Identities=29%  Similarity=0.488  Sum_probs=32.3

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .+|||||||||++|+++|++|++ |++|+||||+.
T Consensus         2 ~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~   36 (476)
T 3lad_A            2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYK   36 (476)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCB
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCEEEEEeCCC
Confidence            47999999999999999999999 99999999986

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=97.76  E-value=1e-05  Score=84.92  Aligned_cols=37  Identities=32%  Similarity=0.499  Sum_probs=33.5

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPF   88 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~   88 (523)
                      .++||||||||++|+++|++|++ |++|+|||+.+..+
T Consensus         3 ~~~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~G   40 (520)
T 1s3e_A            3 NKCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVG   40 (520)
T ss_dssp             CBCSEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSB
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCC
Confidence            46899999999999999999999 99999999987553

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=97.75  E-value=9.2e-06  Score=85.28  Aligned_cols=38  Identities=26%  Similarity=0.362  Sum_probs=34.0

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-c-CeeEEEecCCCCCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-N-FSVLLVERGGSPFG   89 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g-~~VlvlE~G~~~~~   89 (523)
                      .++||||||||++|+++|++|++ | ++|+|||+.+..++
T Consensus         7 ~~~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~riGG   46 (516)
T 1rsg_A            7 AKKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGG   46 (516)
T ss_dssp             EEEEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSSSBT
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCCCCC
Confidence            46899999999999999999999 9 99999999875543

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=97.75  E-value=6.5e-05  Score=78.26  Aligned_cols=35  Identities=31%  Similarity=0.532  Sum_probs=31.7

Q ss_pred             CCcccEEEECCCCchHHHHhhhhccCeeEEEecCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSDNFSVLLVERGG   85 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Laeg~~VlvlE~G~   85 (523)
                      ...+||||||+|++|+++|++|++.++|+|||+++
T Consensus       106 ~~~~dVvIIGgG~aGl~aA~~L~~~~~V~vie~~~  140 (493)
T 1y56_A          106 RVVVDVAIIGGGPAGIGAALELQQYLTVALIEERG  140 (493)
T ss_dssp             EEEESCCEECCSHHHHHHHHHHTTTCCEEEECTTS
T ss_pred             cccCCEEEECccHHHHHHHHHHHhcCCEEEEeCCC
Confidence            34689999999999999999998669999999986

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=97.75  E-value=1.3e-05  Score=83.50  Aligned_cols=39  Identities=31%  Similarity=0.460  Sum_probs=34.6

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPFG   89 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~~   89 (523)
                      ...+||+|||||++|+++|++|++ |++|+|+|+.+...+
T Consensus         9 ~~~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GG   48 (489)
T 2jae_A            9 KGSHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPGG   48 (489)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCCC
Confidence            346899999999999999999999 999999999975544

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=97.74  E-value=4.9e-05  Score=77.22  Aligned_cols=59  Identities=17%  Similarity=0.124  Sum_probs=45.4

Q ss_pred             hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHhhC
Q 009873          228 AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSG  307 (523)
Q Consensus       228 ~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~SG  307 (523)
                      ..++.|+++++++.|++|..++       ++.+|+..  +|+     ++.+         +.||+|+|..-+..++..+|
T Consensus       194 ~l~~~GV~i~~~~~v~~i~~~~-------~~~~v~~~--dg~-----~i~a---------D~Vv~a~G~~p~~~l~~~~g  250 (410)
T 3ef6_A          194 LLTELGVQVELGTGVVGFSGEG-------QLEQVMAS--DGR-----SFVA---------DSALICVGAEPADQLARQAG  250 (410)
T ss_dssp             HHHHHTCEEECSCCEEEEECSS-------SCCEEEET--TSC-----EEEC---------SEEEECSCEEECCHHHHHTT
T ss_pred             HHHHCCCEEEeCCEEEEEeccC-------cEEEEEEC--CCC-----EEEc---------CEEEEeeCCeecHHHHHhCC
Confidence            4567899999999999997533       56677664  365     4666         99999999887777888877


Q ss_pred             CC
Q 009873          308 IG  309 (523)
Q Consensus       308 ig  309 (523)
                      +.
T Consensus       251 l~  252 (410)
T 3ef6_A          251 LA  252 (410)
T ss_dssp             CC
T ss_pred             Cc
Confidence            64

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=97.74  E-value=1.3e-05  Score=83.57  Aligned_cols=39  Identities=33%  Similarity=0.506  Sum_probs=34.0

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPFG   89 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~~   89 (523)
                      ++++||||||||++|+++|++|++ |++|+|||+.+..++
T Consensus        37 ~~~~~v~iiGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG   76 (495)
T 2vvm_A           37 DGPWDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGG   76 (495)
T ss_dssp             -CCEEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSBSBT
T ss_pred             ccCCCEEEECCcHHHHHHHHHHHHCCCCEEEEeCCCCCCC
Confidence            345899999999999999999999 999999999875543

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=97.73  E-value=1.2e-05  Score=83.34  Aligned_cols=40  Identities=28%  Similarity=0.423  Sum_probs=33.0

Q ss_pred             cCCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCCC
Q 009873           50 AGKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPFG   89 (523)
Q Consensus        50 ~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~~   89 (523)
                      ....+||||||||++|+++|+.|++ |++|+|||+.+..++
T Consensus        13 ~~~~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~~~GG   53 (478)
T 2ivd_A           13 RTTGMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGG   53 (478)
T ss_dssp             ----CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBT
T ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCc
Confidence            3457899999999999999999999 999999999875543

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=97.73  E-value=1e-05  Score=83.96  Aligned_cols=35  Identities=31%  Similarity=0.534  Sum_probs=32.5

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      ..+|||||||||++|+++|++|++ |++|+|||++.
T Consensus        18 ~~~~dVvIIGgG~aGl~aA~~la~~G~~V~liE~~~   53 (478)
T 3dk9_A           18 VASYDYLVIGGGSGGLASARRAAELGARAAVVESHK   53 (478)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Confidence            457999999999999999999999 99999999875

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=97.72  E-value=1.4e-05  Score=82.67  Aligned_cols=34  Identities=24%  Similarity=0.360  Sum_probs=31.6

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .+|||||||||++|+++|++|++ |++|+||||+.
T Consensus         4 ~~~DVvVIGaG~aGl~aA~~la~~G~~V~liEk~~   38 (463)
T 4dna_A            4 FDYDLFVIGGGSGGVRSGRLAAALGKKVAIAEEFR   38 (463)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSC
T ss_pred             CCCcEEEECcCHHHHHHHHHHHhCCCEEEEEeCCC
Confidence            46999999999999999999999 99999999953

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=97.72  E-value=1.5e-05  Score=81.30  Aligned_cols=38  Identities=21%  Similarity=0.322  Sum_probs=34.0

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-c-CeeEEEecCCCCCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-N-FSVLLVERGGSPFG   89 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g-~~VlvlE~G~~~~~   89 (523)
                      .++||||||||++|+++|++|++ | ++|+|+|+.+..++
T Consensus         5 ~~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~~GG   44 (424)
T 2b9w_A            5 KDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGG   44 (424)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCSST
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCCCCC
Confidence            46899999999999999999999 8 89999999875543

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=97.71  E-value=9.7e-06  Score=84.44  Aligned_cols=35  Identities=29%  Similarity=0.464  Sum_probs=32.3

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      ..+|||||||||++|+++|.+|++ |++|+||||..
T Consensus         4 ~~~~DvvVIG~G~aGl~aA~~la~~G~~V~liEk~~   39 (488)
T 3dgz_A            4 QQSFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVE   39 (488)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEEecc
Confidence            457999999999999999999999 99999999854

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=97.70  E-value=1.7e-05  Score=79.12  Aligned_cols=36  Identities=22%  Similarity=0.394  Sum_probs=33.1

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecC-CC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERG-GS   86 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G-~~   86 (523)
                      ...+||+|||||++|+++|++|++ |++|+|+|+. +.
T Consensus        42 ~~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~   79 (376)
T 2e1m_A           42 GPPKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANR   79 (376)
T ss_dssp             CSCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSC
T ss_pred             CCCceEEEECCCHHHHHHHHHHHHCCCcEEEEeccccc
Confidence            457899999999999999999999 9999999998 63

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=97.70  E-value=9.9e-06  Score=85.07  Aligned_cols=34  Identities=32%  Similarity=0.547  Sum_probs=32.0

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .+||+||||||++|.++|.++++ |+||+|||+..
T Consensus        41 ydYDviVIG~GpaG~~aA~~aa~~G~kValIE~~~   75 (542)
T 4b1b_A           41 YDYDYVVIGGGPGGMASAKEAAAHGARVLLFDYVK   75 (542)
T ss_dssp             SSEEEEEECCSHHHHHHHHHHHTTTCCEEEECCCC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence            46999999999999999999999 99999999875

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=97.69  E-value=1.2e-05  Score=83.77  Aligned_cols=34  Identities=26%  Similarity=0.406  Sum_probs=32.0

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .+|||||||||++|+++|.+|++ |++|+|||++.
T Consensus         7 ~~~DvvVIGgG~aGl~aA~~la~~G~~V~liE~~~   41 (492)
T 3ic9_A            7 INVDVAIIGTGTAGMGAYRAAKKHTDKVVLIEGGA   41 (492)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTCSCEEEEESSC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence            46999999999999999999999 99999999975

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=97.68  E-value=8.5e-05  Score=80.21  Aligned_cols=34  Identities=26%  Similarity=0.521  Sum_probs=31.5

Q ss_pred             CcccEEEECCCCchHHHHhhhhc------cCeeEEEecCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD------NFSVLLVERGG   85 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae------g~~VlvlE~G~   85 (523)
                      .++||||||||++|+++|+.|++      |.+|+||||.+
T Consensus         7 ~~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~   46 (665)
T 1pn0_A            7 SYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRS   46 (665)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSS
T ss_pred             CCCcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCC
Confidence            36899999999999999999987      79999999975

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=97.67  E-value=1.8e-05  Score=82.05  Aligned_cols=34  Identities=32%  Similarity=0.441  Sum_probs=31.4

Q ss_pred             ccEEEECCCCchHHHHhhhhc-cC--eeEEEecCCCC
Q 009873           54 FDYIVVGGGTTGCPLAATLSD-NF--SVLLVERGGSP   87 (523)
Q Consensus        54 ~DvIIVGsG~aG~~~A~~Lae-g~--~VlvlE~G~~~   87 (523)
                      +||||||||++|+++|++|++ |.  +|+|||+.+..
T Consensus         3 ~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~~~   39 (477)
T 3nks_A            3 RTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERL   39 (477)
T ss_dssp             CEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSSSS
T ss_pred             ceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCCCC
Confidence            699999999999999999999 88  99999998644

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=97.66  E-value=1.7e-05  Score=80.64  Aligned_cols=34  Identities=26%  Similarity=0.481  Sum_probs=31.4

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-cCe-eEEEecCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-NFS-VLLVERGG   85 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~-VlvlE~G~   85 (523)
                      .++||||||||++|+++|+.|++ |.+ |+||||.+
T Consensus         3 ~~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~   38 (410)
T 3c96_A            3 EPIDILIAGAGIGGLSCALALHQAGIGKVTLLESSS   38 (410)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCC
Confidence            35899999999999999999999 999 99999986

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=97.66  E-value=1.6e-05  Score=81.87  Aligned_cols=38  Identities=29%  Similarity=0.394  Sum_probs=34.0

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPFG   89 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~~   89 (523)
                      .++||||||||++|+++|++|++ |++|+|||+.+...+
T Consensus         4 ~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG   42 (453)
T 2yg5_A            4 LQRDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGG   42 (453)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCT
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCCCC
Confidence            46899999999999999999999 999999999875543

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=97.65  E-value=2.4e-05  Score=80.16  Aligned_cols=40  Identities=33%  Similarity=0.465  Sum_probs=35.6

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCCCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPFGN   90 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~~~   90 (523)
                      ..++||||||+|.+|+++|.+|++ |++|+|+|+.+..++.
T Consensus         4 ~~~~~v~iiG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg~   44 (433)
T 1d5t_A            4 DEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGE   44 (433)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTT
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCcccc
Confidence            457999999999999999999999 9999999999765543

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=97.63  E-value=0.00021  Score=74.53  Aligned_cols=37  Identities=22%  Similarity=0.182  Sum_probs=29.2

Q ss_pred             ccCCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           49 VAGKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        49 ~~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      +.++-|||||||+|++|+++|..|.+ +...+++|+..
T Consensus        35 p~~~i~Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~   72 (501)
T 4b63_A           35 PQDELHDLLCVGFGPASLAIAIALHDALDPRLNKSASN   72 (501)
T ss_dssp             CTTSCEEEEEECCSHHHHHHHHHHHHHHCTTTCTTC--
T ss_pred             CCCCcCcEEEEcccHHHHHHHHHHHhcCCCceEEeccc
Confidence            34566999999999999999999988 66666666654

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=97.61  E-value=2.3e-05  Score=76.74  Aligned_cols=34  Identities=29%  Similarity=0.638  Sum_probs=31.9

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      ..+||+|||+|++|+++|..|++ |++|+|||+..
T Consensus         7 ~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~   41 (325)
T 2q7v_A            7 HDYDVVIIGGGPAGLTAAIYTGRAQLSTLILEKGM   41 (325)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHcCCcEEEEeCCC
Confidence            46999999999999999999999 99999999983

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=97.60  E-value=2.3e-05  Score=81.48  Aligned_cols=34  Identities=26%  Similarity=0.366  Sum_probs=31.5

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERG   84 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G   84 (523)
                      ..+|||||||||++|+++|++|++ |++|+||||+
T Consensus         7 ~~~~DvvVIGgG~aGl~aA~~la~~G~~V~liEk~   41 (483)
T 3dgh_A            7 SYDYDLIVIGGGSAGLACAKEAVLNGARVACLDFV   41 (483)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCEEEEEEec
Confidence            457999999999999999999999 9999999964

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=97.58  E-value=2.9e-05  Score=80.43  Aligned_cols=35  Identities=31%  Similarity=0.428  Sum_probs=32.1

Q ss_pred             cccEEEECCCCchHHHHhhhhc-c--CeeEEEecCCCC
Q 009873           53 SFDYIVVGGGTTGCPLAATLSD-N--FSVLLVERGGSP   87 (523)
Q Consensus        53 ~~DvIIVGsG~aG~~~A~~Lae-g--~~VlvlE~G~~~   87 (523)
                      .+||||||||++|+++|++|++ |  ++|+|||+.+..
T Consensus         4 ~~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~~   41 (475)
T 3lov_A            4 SKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERL   41 (475)
T ss_dssp             SCEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSSS
T ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCCC
Confidence            5799999999999999999999 8  999999997643

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=97.57  E-value=2.9e-05  Score=74.74  Aligned_cols=33  Identities=36%  Similarity=0.638  Sum_probs=31.0

Q ss_pred             cccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           53 SFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        53 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .|||+|||||++|+++|..|++ |++|+|+|++.
T Consensus         2 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~   35 (297)
T 3fbs_A            2 KFDVIIIGGSYAGLSAALQLGRARKNILLVDAGE   35 (297)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            3899999999999999999999 89999999975

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=97.56  E-value=3.2e-05  Score=68.73  Aligned_cols=32  Identities=41%  Similarity=0.712  Sum_probs=30.8

Q ss_pred             ccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           54 FDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        54 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      ||++|||+|++|+.+|..|++ |.+|+|+|+++
T Consensus         2 ~~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~   34 (180)
T 2ywl_A            2 WDVIVVGGGPSGLSAALFLARAGLKVLVLDGGR   34 (180)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            799999999999999999999 99999999986

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=97.56  E-value=3.5e-05  Score=80.52  Aligned_cols=39  Identities=26%  Similarity=0.348  Sum_probs=34.0

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPFG   89 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~~   89 (523)
                      ...+||||||||++|+++|++|++ |++|+|+|+.+...+
T Consensus        11 ~~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG   50 (504)
T 1sez_A           11 SSAKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGG   50 (504)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCS
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCC
Confidence            356899999999999999999999 999999999986544

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=97.55  E-value=2.5e-05  Score=79.86  Aligned_cols=33  Identities=24%  Similarity=0.279  Sum_probs=30.8

Q ss_pred             cccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           53 SFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        53 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .+||||||||++|+++|+.|++ |++|+||||..
T Consensus        22 ~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~   55 (430)
T 3ihm_A           22 KKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK   55 (430)
T ss_dssp             -CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            4799999999999999999999 99999999985

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=97.53  E-value=3.5e-05  Score=79.65  Aligned_cols=34  Identities=32%  Similarity=0.576  Sum_probs=32.0

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      ++|||||||||++|+++|.+|++ |++|+|+|++.
T Consensus         3 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~~   37 (463)
T 2r9z_A            3 QHFDLIAIGGGSGGLAVAEKAAAFGKRVALIESKA   37 (463)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             ccCcEEEECCCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence            46999999999999999999999 99999999984

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=97.51  E-value=3.7e-05  Score=79.17  Aligned_cols=34  Identities=29%  Similarity=0.513  Sum_probs=32.0

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      ++|||||||||++|+++|++|++ |++|+|+|++.
T Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~   37 (450)
T 1ges_A            3 KHYDYIAIGGGSGGIASINRAAMYGQKCALIEAKE   37 (450)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSC
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCeEEEEcCCC
Confidence            46999999999999999999999 99999999984

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=97.50  E-value=4.9e-05  Score=76.47  Aligned_cols=36  Identities=19%  Similarity=0.372  Sum_probs=32.7

Q ss_pred             cccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCC
Q 009873           53 SFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPF   88 (523)
Q Consensus        53 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~   88 (523)
                      ++||+|||||++|+++|++|++ |++|+|+|+.+...
T Consensus         3 ~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~G   39 (384)
T 2bi7_A            3 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIG   39 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCcC
Confidence            4799999999999999999999 89999999987443

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=97.49  E-value=5e-05  Score=79.77  Aligned_cols=64  Identities=17%  Similarity=0.242  Sum_probs=46.6

Q ss_pred             hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHH-HHHhh
Q 009873          228 AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQ-LLLLS  306 (523)
Q Consensus       228 ~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~-lLl~S  306 (523)
                      ..++.|++|+++++|++|..++++     ++.++.+...+|+    .++.+         +.||+|+|..-+.. +|..+
T Consensus       264 ~l~~~GV~i~~~~~V~~i~~~~~~-----~v~~~~v~~~~G~----~~i~a---------D~Vv~A~G~~p~~~~~l~~~  325 (523)
T 1mo9_A          264 RMKEQGMEIISGSNVTRIEEDANG-----RVQAVVAMTPNGE----MRIET---------DFVFLGLGEQPRSAELAKIL  325 (523)
T ss_dssp             HHHHTTCEEESSCEEEEEEECTTS-----BEEEEEEEETTEE----EEEEC---------SCEEECCCCEECCHHHHHHH
T ss_pred             HHHhCCcEEEECCEEEEEEEcCCC-----ceEEEEEEECCCc----EEEEc---------CEEEECcCCccCCccCHHHc
Confidence            556789999999999999875543     6655555543442    24776         99999999876666 67777


Q ss_pred             CCC
Q 009873          307 GIG  309 (523)
Q Consensus       307 Gig  309 (523)
                      |+.
T Consensus       326 gl~  328 (523)
T 1mo9_A          326 GLD  328 (523)
T ss_dssp             TCC
T ss_pred             CCc
Confidence            763

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=97.48  E-value=4.2e-05  Score=79.37  Aligned_cols=34  Identities=38%  Similarity=0.676  Sum_probs=32.0

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .+|||||||||++|+++|.+|++ |++|+|||++.
T Consensus        10 ~~~dVvVIGgG~aGl~aA~~l~~~g~~V~liE~~~   44 (479)
T 2hqm_A           10 KHYDYLVIGGGSGGVASARRAASYGAKTLLVEAKA   44 (479)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTSCCEEEEESSC
T ss_pred             ccCCEEEEcCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            47999999999999999999999 99999999974

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=97.47  E-value=5.4e-05  Score=78.66  Aligned_cols=38  Identities=24%  Similarity=0.279  Sum_probs=33.6

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-c-CeeEEEecCCCCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-N-FSVLLVERGGSPF   88 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g-~~VlvlE~G~~~~   88 (523)
                      ...+||+|||||++|+++|++|++ | .+|+|+|+.+..+
T Consensus         7 ~~~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~~~G   46 (484)
T 4dsg_A            7 LLTPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPG   46 (484)
T ss_dssp             CCSCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSSSSS
T ss_pred             ccCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCCCCC
Confidence            346899999999999999999999 7 8999999997443

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=97.47  E-value=3.8e-05  Score=79.80  Aligned_cols=35  Identities=34%  Similarity=0.589  Sum_probs=32.2

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGS   86 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~   86 (523)
                      .+|||||||||++|+++|.+|++ |++|+|||+.+.
T Consensus         5 ~~~dVvIIGaG~aGl~aA~~l~~~G~~V~liE~~~~   40 (482)
T 1ojt_A            5 AEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKT   40 (482)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            46999999999999999999999 999999999653

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=97.47  E-value=5e-05  Score=78.54  Aligned_cols=34  Identities=26%  Similarity=0.396  Sum_probs=31.9

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .+|||||||||++|+++|.+|++ |++|+|||++.
T Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~   37 (467)
T 1zk7_A            3 PPVQVAVIGSGGAAMAAALKAVEQGAQVTLIERGT   37 (467)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            46899999999999999999999 99999999984

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.47  E-value=6e-05  Score=78.02  Aligned_cols=36  Identities=25%  Similarity=0.495  Sum_probs=33.0

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSP   87 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~   87 (523)
                      .+|||||||+|++|+++|.+|++ |++|+|+|+.+..
T Consensus         5 ~~~dvvIIGaG~aGl~aA~~l~~~g~~V~liE~~~~~   41 (470)
T 1dxl_A            5 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGAL   41 (470)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSS
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCc
Confidence            46999999999999999999999 9999999998643

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=97.46  E-value=4.8e-05  Score=78.74  Aligned_cols=34  Identities=26%  Similarity=0.565  Sum_probs=31.9

Q ss_pred             cccEEEECCCCchHHHHhhhhc-cCeeEEEecCCC
Q 009873           53 SFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGS   86 (523)
Q Consensus        53 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~   86 (523)
                      +|||||||||++|+++|.+|++ |++|+|+|+.+.
T Consensus         2 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~   36 (468)
T 2qae_A            2 PYDVVVIGGGPGGYVASIKAAQLGMKTACVEKRGA   36 (468)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            5899999999999999999999 999999999863

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=97.45  E-value=3.8e-05  Score=79.71  Aligned_cols=34  Identities=35%  Similarity=0.640  Sum_probs=31.8

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .+|||||||+|++|+++|.+|++ |++|+|+|+.+
T Consensus         4 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~   38 (478)
T 1v59_A            4 KSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRG   38 (478)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            46999999999999999999999 99999999965

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=97.44  E-value=5e-05  Score=78.29  Aligned_cols=34  Identities=26%  Similarity=0.467  Sum_probs=31.7

Q ss_pred             cccEEEECCCCchHHHHhhhhc-cCeeEEEecCCC
Q 009873           53 SFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGS   86 (523)
Q Consensus        53 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~   86 (523)
                      +|||||||||++|+++|.+|++ |++|+|||+++.
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~   35 (455)
T 2yqu_A            1 MYDLLVIGAGPGGYVAAIRAAQLGMKVGVVEKEKA   35 (455)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSS
T ss_pred             CCCEEEECCChhHHHHHHHHHHCCCeEEEEeCCCC
Confidence            4899999999999999999999 999999999853

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=97.44  E-value=5e-05  Score=75.68  Aligned_cols=33  Identities=30%  Similarity=0.642  Sum_probs=31.3

Q ss_pred             cccEEEECCCCchHHHHhhhhc-cC-eeEEEecCC
Q 009873           53 SFDYIVVGGGTTGCPLAATLSD-NF-SVLLVERGG   85 (523)
Q Consensus        53 ~~DvIIVGsG~aG~~~A~~Lae-g~-~VlvlE~G~   85 (523)
                      +|||||||||++|+++|.+|++ |. +|+|||+..
T Consensus         4 ~~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~   38 (369)
T 3d1c_A            4 HHKVAIIGAGAAGIGMAITLKDFGITDVIILEKGT   38 (369)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             cCcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCC
Confidence            5899999999999999999998 88 999999986

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.44  E-value=5.5e-05  Score=78.99  Aligned_cols=33  Identities=39%  Similarity=0.631  Sum_probs=31.4

Q ss_pred             cccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           53 SFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        53 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      +|||||||||++|+++|.+|++ |++|+|+|++.
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~~   35 (500)
T 1onf_A            2 VYDLIVIGGGSGGMAAARRAARHNAKVALVEKSR   35 (500)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            5899999999999999999999 99999999985

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.42  E-value=5.5e-05  Score=77.98  Aligned_cols=34  Identities=29%  Similarity=0.431  Sum_probs=31.6

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .+|||||||||++|+++|.+|++ |++|+|+|+..
T Consensus         2 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~   36 (455)
T 1ebd_A            2 IETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGN   36 (455)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCC
Confidence            36899999999999999999999 99999999983

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=97.41  E-value=5.8e-05  Score=78.22  Aligned_cols=35  Identities=23%  Similarity=0.402  Sum_probs=32.5

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGS   86 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~   86 (523)
                      .+|||||||||++|+++|.+|++ |++|+|||+.+.
T Consensus         5 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~   40 (474)
T 1zmd_A            5 IDADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNET   40 (474)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            46999999999999999999999 999999999863

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=97.40  E-value=6.4e-05  Score=74.29  Aligned_cols=33  Identities=33%  Similarity=0.256  Sum_probs=31.1

Q ss_pred             ccEEEECCCCchHHHHhhhhc-cCeeEEEecCCC
Q 009873           54 FDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGS   86 (523)
Q Consensus        54 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~   86 (523)
                      +||||||+|.+|+.+|+.|++ |.+|+|+|+.+.
T Consensus         2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~~   35 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRPK   35 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTT
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCcEEEEeccCC
Confidence            699999999999999999999 999999999863

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=97.39  E-value=5.4e-05  Score=73.81  Aligned_cols=33  Identities=21%  Similarity=0.369  Sum_probs=30.7

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-cCeeEEEecC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERG   84 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G   84 (523)
                      ..+||+|||+|++|+++|+.|++ |++|+|+|+.
T Consensus         4 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~   37 (320)
T 1trb_A            4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGM   37 (320)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEccC
Confidence            35899999999999999999999 8999999975

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=97.39  E-value=5.3e-05  Score=74.59  Aligned_cols=34  Identities=26%  Similarity=0.349  Sum_probs=31.5

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERG   84 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G   84 (523)
                      ...+||||||+|++|+++|..|++ |++|+|+|+.
T Consensus        12 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~   46 (335)
T 2a87_A           12 HPVRDVIVIGSGPAGYTAALYAARAQLAPLVFEGT   46 (335)
T ss_dssp             CCCEEEEEECCHHHHHHHHHHHHHTTCCCEEECCS
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence            457999999999999999999999 9999999975

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=97.37  E-value=7.8e-05  Score=78.56  Aligned_cols=35  Identities=29%  Similarity=0.433  Sum_probs=31.6

Q ss_pred             CcccEEEECCCCchHHHHhhhhc----cCeeEEEecCCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD----NFSVLLVERGGS   86 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae----g~~VlvlE~G~~   86 (523)
                      ..+||||||||++|+++|+.|++    |.+|+|||+...
T Consensus         4 ~~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~~   42 (538)
T 2aqj_A            4 PIKNIVIVGGGTAGWMAASYLVRALQQQANITLIESAAI   42 (538)
T ss_dssp             BCCEEEEECCSHHHHHHHHHHHHHCCSSCEEEEEECSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence            46899999999999999999987    699999999753

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=97.37  E-value=7.9e-05  Score=77.67  Aligned_cols=39  Identities=26%  Similarity=0.413  Sum_probs=34.5

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPFG   89 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~~   89 (523)
                      ...+||||||||++|+++|+.|++ |.+|+|||+.+...+
T Consensus        31 ~~~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~gg   70 (498)
T 2iid_A           31 SNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGG   70 (498)
T ss_dssp             SSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBT
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCC
Confidence            456899999999999999999999 999999999875443

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=97.35  E-value=6.7e-05  Score=77.51  Aligned_cols=33  Identities=27%  Similarity=0.425  Sum_probs=31.2

Q ss_pred             cccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           53 SFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        53 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      +|||||||||++|+++|.+|++ |++|+|+|+..
T Consensus         3 ~~dvvIIGaG~aGl~aA~~l~~~G~~V~liE~~~   36 (464)
T 2a8x_A            3 HYDVVVLGAGPGGYVAAIRAAQLGLSTAIVEPKY   36 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            5899999999999999999999 99999999983

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=97.35  E-value=5.9e-05  Score=74.02  Aligned_cols=32  Identities=22%  Similarity=0.293  Sum_probs=30.3

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-cCeeEEEec
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVER   83 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~   83 (523)
                      ..+||||||+|++|+++|+.|++ |++|+|||+
T Consensus         7 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~   39 (333)
T 1vdc_A            7 HNTRLCIVGSGPAAHTAAIYAARAELKPLLFEG   39 (333)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCCEEECC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCeEEEEec
Confidence            36899999999999999999999 999999998

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.34  E-value=7.8e-05  Score=76.87  Aligned_cols=34  Identities=24%  Similarity=0.407  Sum_probs=31.5

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .+|||||||||++|+++|.+|++ |++|+|+|++.
T Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~   38 (458)
T 1lvl_A            4 IQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQA   38 (458)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEccCC
Confidence            46999999999999999999999 99999999953

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=97.29  E-value=9.6e-05  Score=76.34  Aligned_cols=33  Identities=36%  Similarity=0.605  Sum_probs=31.6

Q ss_pred             cccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           53 SFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        53 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      +|||||||+|++|+++|.+|++ |++|+|+|+..
T Consensus         6 ~~dvvIIG~G~aG~~aA~~l~~~g~~V~lie~~~   39 (464)
T 2eq6_A            6 TYDLIVIGTGPGGYHAAIRAAQLGLKVLAVEAGE   39 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            6999999999999999999999 99999999986

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=97.29  E-value=0.00012  Score=79.41  Aligned_cols=38  Identities=29%  Similarity=0.440  Sum_probs=34.2

Q ss_pred             cCCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCC
Q 009873           50 AGKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSP   87 (523)
Q Consensus        50 ~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~   87 (523)
                      ....+||||||||++|+++|+.|++ |++|+|+|+++..
T Consensus       388 ~~~~~~VvIIGgG~AGl~aA~~La~~G~~V~liE~~~~~  426 (690)
T 3k30_A          388 KESDARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDL  426 (690)
T ss_dssp             CSSCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             ccccceEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            4567899999999999999999999 9999999998643

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=97.28  E-value=0.0001  Score=76.35  Aligned_cols=37  Identities=30%  Similarity=0.367  Sum_probs=32.1

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-cC-eeEEEecCCCCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-NF-SVLLVERGGSPF   88 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g~-~VlvlE~G~~~~   88 (523)
                      ..+||+|||+|++|+++|++|++ |. +|+|+|+++...
T Consensus         3 ~~~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~~~~~g   41 (472)
T 1b37_A            3 VGPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIG   41 (472)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSB
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCceEEEeCCCCCC
Confidence            46899999999999999999999 88 899999987543

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=97.28  E-value=0.00012  Score=73.94  Aligned_cols=31  Identities=29%  Similarity=0.423  Sum_probs=29.5

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .|+|||||++|+++|+.|++ |.+|+|+||.+
T Consensus         3 ~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~   34 (412)
T 4hb9_A            3 HVGIIGAGIGGTCLAHGLRKHGIKVTIYERNS   34 (412)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            59999999999999999999 99999999976

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=97.22  E-value=0.00015  Score=76.93  Aligned_cols=40  Identities=35%  Similarity=0.375  Sum_probs=36.4

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCCCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPFGN   90 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~~~   90 (523)
                      ..+|||||||+|..|+++|..|++ |++||+|||.+..+++
T Consensus         6 ~~~~D~~i~GtGl~~~~~a~~~~~~g~~vl~id~~~~~gg~   46 (650)
T 1vg0_A            6 PSDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGN   46 (650)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGG
T ss_pred             CCcCCEEEECCcHHHHHHHHHHHhCCCEEEEEcCCCcccCc
Confidence            458999999999999999999999 9999999999877654

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=97.21  E-value=0.00013  Score=73.11  Aligned_cols=32  Identities=25%  Similarity=0.535  Sum_probs=29.8

Q ss_pred             cEEEECCCCchHHHHhhhhc---cCeeEEEecCCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD---NFSVLLVERGGS   86 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae---g~~VlvlE~G~~   86 (523)
                      ||||||||++|+++|+.|++   |.+|+|+||.+.
T Consensus         2 dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~   36 (381)
T 3c4a_A            2 KILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDE   36 (381)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCT
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCC
Confidence            89999999999999999986   799999999863

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=97.21  E-value=0.00018  Score=76.05  Aligned_cols=35  Identities=29%  Similarity=0.396  Sum_probs=31.7

Q ss_pred             CcccEEEECCCCchHHHHhhhhc----cCeeEEEecCCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD----NFSVLLVERGGS   86 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae----g~~VlvlE~G~~   86 (523)
                      ..+||||||||++|+++|..|++    |.+|+|||+...
T Consensus        24 ~~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~~   62 (550)
T 2e4g_A           24 KIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPDI   62 (550)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTTTSSEEEEEECCCC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCCcEEEEeCCCC
Confidence            57899999999999999999987    589999999753

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=97.21  E-value=0.00018  Score=74.06  Aligned_cols=37  Identities=22%  Similarity=0.309  Sum_probs=33.4

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSP   87 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~   87 (523)
                      ...+||+|||||++|+++|+.|++ |++|+|+|+.+..
T Consensus       120 ~~~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~~  157 (456)
T 2vdc_G          120 ELGLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRM  157 (456)
T ss_dssp             SCCCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCC
Confidence            356899999999999999999999 9999999998643

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=97.20  E-value=0.00011  Score=77.00  Aligned_cols=34  Identities=38%  Similarity=0.539  Sum_probs=29.0

Q ss_pred             cccEEEECCCCchHHHHhhhhc----cCeeEEEecCCC
Q 009873           53 SFDYIVVGGGTTGCPLAATLSD----NFSVLLVERGGS   86 (523)
Q Consensus        53 ~~DvIIVGsG~aG~~~A~~Lae----g~~VlvlE~G~~   86 (523)
                      .+||||||||++|+++|+.|++    |.+|+|||+...
T Consensus         2 ~~dVvIVGgG~aGl~~A~~La~~~~~G~~V~lvE~~~~   39 (511)
T 2weu_A            2 IRSVVIVGGGTAGWMTASYLKAAFDDRIDVTLVESGNV   39 (511)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHHHHGGGSEEEEEEC---
T ss_pred             cceEEEECCCHHHHHHHHHHHhhcCCCCEEEEEecCCC
Confidence            3799999999999999999987    599999999763

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=97.20  E-value=0.00015  Score=75.32  Aligned_cols=31  Identities=19%  Similarity=0.491  Sum_probs=29.3

Q ss_pred             CcccEEEECCCCchHHHHhhhhc--cCeeEEEe
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD--NFSVLLVE   82 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae--g~~VlvlE   82 (523)
                      .+|||||||||++|+++|++|++  |++|+|||
T Consensus         2 ~~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE   34 (490)
T 1fec_A            2 RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVID   34 (490)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEE
T ss_pred             ccccEEEECCCHHHHHHHHHHHHHcCCEEEEEe
Confidence            46999999999999999999988  89999999

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=97.18  E-value=0.00014  Score=77.71  Aligned_cols=34  Identities=21%  Similarity=0.399  Sum_probs=31.8

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERG   84 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G   84 (523)
                      ...|||||||||++|+++|.+|++ |++|+|+|+.
T Consensus       105 ~~~~dvvVIG~GpAGl~aA~~l~~~g~~v~liE~~  139 (598)
T 2x8g_A          105 KYDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYV  139 (598)
T ss_dssp             SSSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCC
T ss_pred             cccccEEEECCCccHHHHHHHHHhCCCeEEEEecc
Confidence            467999999999999999999999 9999999984

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=97.16  E-value=0.00016  Score=75.29  Aligned_cols=32  Identities=28%  Similarity=0.474  Sum_probs=29.9

Q ss_pred             CcccEEEECCCCchHHHHhhhhc--cCeeEEEec
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD--NFSVLLVER   83 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae--g~~VlvlE~   83 (523)
                      .+|||||||||++|+++|++|++  |++|+|||+
T Consensus         6 ~~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~   39 (495)
T 2wpf_A            6 KAFDLVVIGAGSGGLEAGWNAATLYGKRVAVVDV   39 (495)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHCCCEEEEES
T ss_pred             cccCEEEECCChhHHHHHHHHHHhcCCeEEEEec
Confidence            47999999999999999999988  899999993

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=97.12  E-value=0.00018  Score=74.97  Aligned_cols=33  Identities=21%  Similarity=0.430  Sum_probs=30.5

Q ss_pred             cccEEEECCCCchHHHHhhhhc----cCeeEEEecCC
Q 009873           53 SFDYIVVGGGTTGCPLAATLSD----NFSVLLVERGG   85 (523)
Q Consensus        53 ~~DvIIVGsG~aG~~~A~~Lae----g~~VlvlE~G~   85 (523)
                      +|||||||||++|+++|++|++    |++|+|||++.
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~   38 (499)
T 1xdi_A            2 VTRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG   38 (499)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCC
Confidence            4899999999999999999986    68999999986

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=97.05  E-value=0.00026  Score=71.04  Aligned_cols=34  Identities=18%  Similarity=0.401  Sum_probs=30.1

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-c--CeeEEEecCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-N--FSVLLVERGG   85 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g--~~VlvlE~G~   85 (523)
                      .+|||||||||++|+++|.+|++ |  .+|+|+|+..
T Consensus         3 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~   39 (384)
T 2v3a_A            3 ERAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADD   39 (384)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHTTCSSSCEEEECSSC
T ss_pred             CCCcEEEECChHHHHHHHHHHHhhCCCCCEEEEECCC
Confidence            35899999999999999999998 7  5799999875

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=97.01  E-value=0.0003  Score=71.81  Aligned_cols=60  Identities=13%  Similarity=0.144  Sum_probs=45.4

Q ss_pred             hCCCCCeEEEeccEEEEEEE--cCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHh
Q 009873          228 AGNPKNLVVLLNATVNNIIF--SNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLL  305 (523)
Q Consensus       228 ~~~~~g~~i~~~~~V~~l~~--~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~  305 (523)
                      ..++.|+++++++.|++|..  +++      ++.+|++.  +|+     ++.+         +.||+|+|..-+..++..
T Consensus       200 ~l~~~GV~i~~~~~v~~i~~~~~~~------~v~~v~~~--~G~-----~i~~---------D~Vv~a~G~~p~~~l~~~  257 (431)
T 1q1r_A          200 LHREAGVDIRTGTQVCGFEMSTDQQ------KVTAVLCE--DGT-----RLPA---------DLVIAGIGLIPNCELASA  257 (431)
T ss_dssp             HHHHHTCEEECSCCEEEEEECTTTC------CEEEEEET--TSC-----EEEC---------SEEEECCCEEECCHHHHH
T ss_pred             HHHhCCeEEEeCCEEEEEEeccCCC------cEEEEEeC--CCC-----EEEc---------CEEEECCCCCcCcchhhc
Confidence            45567999999999999986  344      67777653  465     3666         999999998766677777


Q ss_pred             hCCC
Q 009873          306 SGIG  309 (523)
Q Consensus       306 SGig  309 (523)
                      +|+.
T Consensus       258 ~gl~  261 (431)
T 1q1r_A          258 AGLQ  261 (431)
T ss_dssp             TTCC
T ss_pred             cCCC
Confidence            7764

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=96.97  E-value=0.00043  Score=74.92  Aligned_cols=37  Identities=22%  Similarity=0.291  Sum_probs=33.6

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSP   87 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~   87 (523)
                      ...+||||||||++|+.+|..|++ |++|+|+|+.+..
T Consensus       371 ~~~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~  408 (671)
T 1ps9_A          371 VQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEI  408 (671)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSS
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence            456899999999999999999999 9999999998644

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=96.96  E-value=0.00029  Score=73.27  Aligned_cols=34  Identities=15%  Similarity=0.300  Sum_probs=31.7

Q ss_pred             cccEEEECCCCchHHHHhhhhc-c---CeeEEEecCCC
Q 009873           53 SFDYIVVGGGTTGCPLAATLSD-N---FSVLLVERGGS   86 (523)
Q Consensus        53 ~~DvIIVGsG~aG~~~A~~Lae-g---~~VlvlE~G~~   86 (523)
                      ++||||||+|++|+++|.+|++ |   .+|+|||+.+.
T Consensus        35 ~~dvvIIGaG~aGl~aA~~l~~~g~~~~~V~lie~~~~   72 (490)
T 2bc0_A           35 GSKIVVVGANHAGTACIKTMLTNYGDANEIVVFDQNSN   72 (490)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHHGGGSEEEEECSSSC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhcCCCCCeEEEEECCCC
Confidence            5899999999999999999998 7   99999999863

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=96.95  E-value=0.004  Score=62.34  Aligned_cols=32  Identities=25%  Similarity=0.490  Sum_probs=29.8

Q ss_pred             ccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           54 FDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        54 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      -+++|||+|..|+-+|..|++ |.+|.|+|+++
T Consensus       146 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~  178 (384)
T 2v3a_A          146 RRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCE  178 (384)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEecCc
Confidence            469999999999999999999 99999999986

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=96.95  E-value=0.00034  Score=69.76  Aligned_cols=33  Identities=27%  Similarity=0.460  Sum_probs=30.2

Q ss_pred             cccEEEECCCCchHHHHhhhhc-cCeeEEEecCCC
Q 009873           53 SFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGS   86 (523)
Q Consensus        53 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~   86 (523)
                      --||||||+|++|+++|.+|++ | +|+|+|++..
T Consensus         8 ~~~vvIIGgG~AGl~aA~~l~~~g-~V~lie~~~~   41 (367)
T 1xhc_A            8 GSKVVIVGNGPGGFELAKQLSQTY-EVTVIDKEPV   41 (367)
T ss_dssp             -CEEEEECCSHHHHHHHHHHTTTS-EEEEECSSSS
T ss_pred             CCcEEEECCcHHHHHHHHHHhhcC-CEEEEECCCC
Confidence            3599999999999999999998 9 9999999874

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=96.94  E-value=0.00044  Score=75.54  Aligned_cols=37  Identities=22%  Similarity=0.394  Sum_probs=33.6

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSP   87 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~   87 (523)
                      ...+||+|||||++|+.+|..|++ |++|+|+|+.+..
T Consensus       387 ~~~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~~~  424 (729)
T 1o94_A          387 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKI  424 (729)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSST
T ss_pred             cCCceEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCc
Confidence            456899999999999999999999 9999999998744

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=96.94  E-value=0.00036  Score=71.75  Aligned_cols=33  Identities=21%  Similarity=0.169  Sum_probs=30.5

Q ss_pred             ccEEEECCCCchHHHHhhhhc---cCeeEEEecCCC
Q 009873           54 FDYIVVGGGTTGCPLAATLSD---NFSVLLVERGGS   86 (523)
Q Consensus        54 ~DvIIVGsG~aG~~~A~~Lae---g~~VlvlE~G~~   86 (523)
                      +||||||||++|+++|.+|++   |.+|+|||+.+.
T Consensus         1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~   36 (452)
T 2cdu_A            1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDN   36 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCC
Confidence            599999999999999999987   799999999873

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=96.89  E-value=0.00045  Score=74.61  Aligned_cols=39  Identities=28%  Similarity=0.392  Sum_probs=34.5

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPFG   89 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~~   89 (523)
                      ...+||+|||||++|+++|+.|++ |++|+|+|+.+..++
T Consensus       105 ~~~~~v~viG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg  144 (662)
T 2z3y_A          105 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGG  144 (662)
T ss_dssp             SCCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBT
T ss_pred             cCCCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCC
Confidence            456899999999999999999999 999999999875443

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=96.86  E-value=0.00048  Score=69.79  Aligned_cols=35  Identities=17%  Similarity=0.328  Sum_probs=31.6

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-cC--eeEEEecCCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-NF--SVLLVERGGS   86 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g~--~VlvlE~G~~   86 (523)
                      .++||||||+|++|+++|.+|++ |.  +|+|+|+.+.
T Consensus         6 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~   43 (408)
T 2gqw_A            6 LKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAE   43 (408)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCS
T ss_pred             CCCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCC
Confidence            46899999999999999999998 75  6999999874

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=96.85  E-value=0.00041  Score=78.13  Aligned_cols=36  Identities=28%  Similarity=0.400  Sum_probs=33.1

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSP   87 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~   87 (523)
                      ..|||||||+|++|+.+|.+|++ |++|+|||+.+..
T Consensus       127 ~~~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~~  163 (965)
T 2gag_A          127 VHTDVLVVGAGPAGLAAAREASRSGARVMLLDERAEA  163 (965)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             cCCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence            46899999999999999999999 9999999998644

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=96.85  E-value=0.00051  Score=71.44  Aligned_cols=59  Identities=19%  Similarity=0.258  Sum_probs=44.1

Q ss_pred             hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHhhC
Q 009873          228 AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSG  307 (523)
Q Consensus       228 ~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~SG  307 (523)
                      ..++.|+++++++.|++|..+++      ++ .|+.  .+|+     ++.+         +.||+|+|..-++.++..+|
T Consensus       235 ~l~~~GV~v~~~~~V~~i~~~~~------~~-~v~l--~dG~-----~i~a---------D~Vv~a~G~~pn~~l~~~~g  291 (493)
T 1m6i_A          235 KVRREGVKVMPNAIVQSVGVSSG------KL-LIKL--KDGR-----KVET---------DHIVAAVGLEPNVELAKTGG  291 (493)
T ss_dssp             HHHTTTCEEECSCCEEEEEEETT------EE-EEEE--TTSC-----EEEE---------SEEEECCCEEECCTTHHHHT
T ss_pred             HHHhcCCEEEeCCEEEEEEecCC------eE-EEEE--CCCC-----EEEC---------CEEEECCCCCccHHHHHHcC
Confidence            55678999999999999986554      43 4544  3465     4676         99999999876666777777


Q ss_pred             CC
Q 009873          308 IG  309 (523)
Q Consensus       308 ig  309 (523)
                      +.
T Consensus       292 l~  293 (493)
T 1m6i_A          292 LE  293 (493)
T ss_dssp             CC
T ss_pred             Cc
Confidence            63

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=96.83  E-value=0.005  Score=59.31  Aligned_cols=54  Identities=22%  Similarity=0.438  Sum_probs=41.5

Q ss_pred             CCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEec-CCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHH
Q 009873          232 KNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKS-DGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLL  303 (523)
Q Consensus       232 ~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~-~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lL  303 (523)
                      .|++++++++|++|..+++      ++.+|++.+. +|+   ..++.+         +.||+|+|...++.+|
T Consensus       193 ~gv~v~~~~~v~~i~~~~~------~v~~v~~~~~~~g~---~~~i~~---------D~vi~a~G~~p~~~~l  247 (310)
T 1fl2_A          193 KNVDIILNAQTTEVKGDGS------KVVGLEYRDRVSGD---IHNIEL---------AGIFVQIGLLPNTNWL  247 (310)
T ss_dssp             TTEEEESSEEEEEEEESSS------SEEEEEEEETTTCC---EEEEEC---------SEEEECSCEEESCGGG
T ss_pred             CCeEEecCCceEEEEcCCC------cEEEEEEEECCCCc---EEEEEc---------CEEEEeeCCccCchHH
Confidence            6899999999999986655      7889998863 365   567776         9999999865444443

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=96.76  E-value=0.00073  Score=74.49  Aligned_cols=39  Identities=28%  Similarity=0.392  Sum_probs=34.5

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPFG   89 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~~   89 (523)
                      ...+||+|||+|++|+++|+.|++ |++|+|+|+.+..++
T Consensus       276 ~~~~~v~viG~G~aGl~~A~~l~~~g~~v~v~E~~~~~GG  315 (852)
T 2xag_A          276 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGG  315 (852)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEecCcCCC
Confidence            456799999999999999999999 999999999875543

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=96.76  E-value=0.0075  Score=59.56  Aligned_cols=59  Identities=20%  Similarity=0.133  Sum_probs=43.7

Q ss_pred             CCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHhhC
Q 009873          231 PKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSG  307 (523)
Q Consensus       231 ~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~SG  307 (523)
                      +.|++++++++|++|..+++      ++.+|++...+|+   ..++.+         +.||+|+|.-.++.+|..+|
T Consensus       214 ~~gv~i~~~~~v~~i~~~~~------~v~~v~~~~~~g~---~~~i~~---------D~vi~a~G~~p~~~~l~~~~  272 (360)
T 3ab1_A          214 NGTIDVYLETEVASIEESNG------VLTRVHLRSSDGS---KWTVEA---------DRLLILIGFKSNLGPLARWD  272 (360)
T ss_dssp             HTSEEEESSEEEEEEEEETT------EEEEEEEEETTCC---EEEEEC---------SEEEECCCBCCSCGGGGGSS
T ss_pred             cCceEEEcCcCHHHhccCCC------ceEEEEEEecCCC---eEEEeC---------CEEEECCCCCCCHHHHHhhc
Confidence            46789999999999988765      8888888744575   566776         99999999644434444333

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=96.75  E-value=0.00059  Score=70.08  Aligned_cols=34  Identities=12%  Similarity=0.329  Sum_probs=31.0

Q ss_pred             ccEEEECCCCchHHHHhhhhc---cCeeEEEecCCCC
Q 009873           54 FDYIVVGGGTTGCPLAATLSD---NFSVLLVERGGSP   87 (523)
Q Consensus        54 ~DvIIVGsG~aG~~~A~~Lae---g~~VlvlE~G~~~   87 (523)
                      .||||||||++|+++|.+|++   +.+|+|||+++..
T Consensus         3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~   39 (452)
T 3oc4_A            3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATV   39 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCC
T ss_pred             CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCC
Confidence            599999999999999999987   6899999999744

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=96.75  E-value=0.00059  Score=70.70  Aligned_cols=35  Identities=29%  Similarity=0.581  Sum_probs=31.1

Q ss_pred             cccEEEECCCCchHHHHhhhhc---cCeeEEEecCCCC
Q 009873           53 SFDYIVVGGGTTGCPLAATLSD---NFSVLLVERGGSP   87 (523)
Q Consensus        53 ~~DvIIVGsG~aG~~~A~~Lae---g~~VlvlE~G~~~   87 (523)
                      .+||||||+|++|+++|.+|++   |.+|+|||+.+..
T Consensus        36 ~~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~   73 (480)
T 3cgb_A           36 SMNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIY   73 (480)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCC
T ss_pred             cceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCC
Confidence            3699999999999999999987   6899999998743

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=96.74  E-value=0.00065  Score=69.72  Aligned_cols=35  Identities=20%  Similarity=0.366  Sum_probs=31.5

Q ss_pred             cccEEEECCCCchHHHHhhhhc---cCeeEEEecCCCC
Q 009873           53 SFDYIVVGGGTTGCPLAATLSD---NFSVLLVERGGSP   87 (523)
Q Consensus        53 ~~DvIIVGsG~aG~~~A~~Lae---g~~VlvlE~G~~~   87 (523)
                      .+||||||||++|+++|.+|++   +.+|+|+|+.+..
T Consensus         3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~   40 (449)
T 3kd9_A            3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWV   40 (449)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCC
T ss_pred             cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCcc
Confidence            4799999999999999999987   5899999999744

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=96.73  E-value=0.00065  Score=69.67  Aligned_cols=33  Identities=21%  Similarity=0.352  Sum_probs=30.3

Q ss_pred             ccEEEECCCCchHHHHhhhhc---cCeeEEEecCCC
Q 009873           54 FDYIVVGGGTTGCPLAATLSD---NFSVLLVERGGS   86 (523)
Q Consensus        54 ~DvIIVGsG~aG~~~A~~Lae---g~~VlvlE~G~~   86 (523)
                      .||||||+|++|+++|.+|++   |.+|+|||+.+.
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~   36 (447)
T 1nhp_A            1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDF   36 (447)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCc
Confidence            389999999999999999987   699999999874

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=96.70  E-value=0.0032  Score=64.15  Aligned_cols=31  Identities=35%  Similarity=0.586  Sum_probs=29.2

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .++|||+|..|+-+|..|++ |.+|.++|+.+
T Consensus       151 ~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~  182 (431)
T 1q1r_A          151 RLVVIGGGYIGLEVAATAIKANMHVTLLDTAA  182 (431)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEEeCC
Confidence            59999999999999999999 99999999986

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=96.68  E-value=0.0059  Score=59.08  Aligned_cols=54  Identities=11%  Similarity=0.261  Sum_probs=41.2

Q ss_pred             CCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEec-C-CCCCceeEEEecCCCCCCCCCcEEEecCCchhHHH
Q 009873          231 PKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKS-D-GSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQL  302 (523)
Q Consensus       231 ~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~-~-g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~l  302 (523)
                      +.|++++++++|++|..+++      ++.+|++.+. + |+   ..++.+         +.||+|+|.-.++.+
T Consensus       196 ~~gv~i~~~~~v~~i~~~~~------~v~~v~~~~~~~~g~---~~~i~~---------D~vv~a~G~~p~~~~  251 (320)
T 1trb_A          196 NGNIILHTNRTLEEVTGDQM------GVTGVRLRDTQNSDN---IESLDV---------AGLFVAIGHSPNTAI  251 (320)
T ss_dssp             TSSEEEECSCEEEEEEECSS------SEEEEEEECCTTCCC---CEEEEC---------SEEEECSCEEESCGG
T ss_pred             cCCeEEEcCceeEEEEcCCC------ceEEEEEEeccCCCc---eEEEEc---------CEEEEEeCCCCChHH
Confidence            57899999999999987765      7888988752 2 44   456776         999999997544443

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=96.67  E-value=0.00084  Score=68.98  Aligned_cols=35  Identities=26%  Similarity=0.384  Sum_probs=31.7

Q ss_pred             cccEEEECCCCchHHHHhhhhc--------cCeeEEEecCCCC
Q 009873           53 SFDYIVVGGGTTGCPLAATLSD--------NFSVLLVERGGSP   87 (523)
Q Consensus        53 ~~DvIIVGsG~aG~~~A~~Lae--------g~~VlvlE~G~~~   87 (523)
                      .+||+|||||++|+.+|..|++        +.+|+|+|+.+..
T Consensus         3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~   45 (456)
T 1lqt_A            3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTP   45 (456)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCC
Confidence            4799999999999999999987        7999999998644

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=96.66  E-value=0.00089  Score=68.88  Aligned_cols=36  Identities=28%  Similarity=0.301  Sum_probs=32.2

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-c--CeeEEEecCCCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-N--FSVLLVERGGSP   87 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g--~~VlvlE~G~~~   87 (523)
                      ..+||||||+|++|+.+|..|++ +  .+|+|+|+.+..
T Consensus         5 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~   43 (460)
T 1cjc_A            5 QTPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVP   43 (460)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSS
T ss_pred             CCceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcC
Confidence            35799999999999999999998 7  999999998754

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=96.65  E-value=0.011  Score=61.70  Aligned_cols=32  Identities=19%  Similarity=0.292  Sum_probs=29.7

Q ss_pred             ccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           54 FDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        54 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      -.++|||+|..|+-+|..|++ |.+|.++|+.+
T Consensus       215 ~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~  247 (523)
T 1mo9_A          215 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTE  247 (523)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEecC
Confidence            469999999999999999998 99999999986

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=96.58  E-value=0.00095  Score=67.53  Aligned_cols=32  Identities=22%  Similarity=0.273  Sum_probs=29.6

Q ss_pred             cEEEECCCCchHHHHhhhhc----cCeeEEEecCCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD----NFSVLLVERGGS   86 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae----g~~VlvlE~G~~   86 (523)
                      ||||||||++|+++|.+|++    |.+|+|||+.+.
T Consensus         3 ~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~   38 (409)
T 3h8l_A            3 KVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRF   38 (409)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSE
T ss_pred             eEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCC
Confidence            79999999999999999987    599999999973

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=96.57  E-value=0.001  Score=75.35  Aligned_cols=36  Identities=17%  Similarity=0.285  Sum_probs=32.4

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-cC-eeEEEecCCCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-NF-SVLLVERGGSP   87 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g~-~VlvlE~G~~~   87 (523)
                      ..+||+|||||++|+++|..|++ |+ +|+|+|+.+..
T Consensus       186 ~~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~  223 (1025)
T 1gte_A          186 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYV  223 (1025)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSC
T ss_pred             CCCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCCC
Confidence            46899999999999999999999 88 79999998643

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=96.55  E-value=0.013  Score=60.09  Aligned_cols=32  Identities=28%  Similarity=0.404  Sum_probs=29.7

Q ss_pred             ccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           54 FDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        54 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      -.++|||+|..|+-+|..|++ |.+|.|+|+++
T Consensus       170 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~  202 (464)
T 2eq6_A          170 KRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMP  202 (464)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCC
Confidence            369999999999999999998 99999999986

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=96.54  E-value=0.0015  Score=66.81  Aligned_cols=33  Identities=24%  Similarity=0.464  Sum_probs=30.3

Q ss_pred             ccEEEECCCCchHHHHhhhhc----cCeeEEEecCCC
Q 009873           54 FDYIVVGGGTTGCPLAATLSD----NFSVLLVERGGS   86 (523)
Q Consensus        54 ~DvIIVGsG~aG~~~A~~Lae----g~~VlvlE~G~~   86 (523)
                      .||||||||++|+++|..|++    +.+|+|||+.+.
T Consensus         5 ~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~   41 (437)
T 3sx6_A            5 AHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDY   41 (437)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSE
T ss_pred             CcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCC
Confidence            689999999999999999987    589999999873

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=96.52  E-value=0.0011  Score=70.44  Aligned_cols=36  Identities=36%  Similarity=0.489  Sum_probs=32.0

Q ss_pred             CcccEEEECCCCchHHHHhhhhc---cCeeEEEecCCCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD---NFSVLLVERGGSP   87 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae---g~~VlvlE~G~~~   87 (523)
                      ...||||||||++|+++|.+|++   +.+|+|+|+.+..
T Consensus        35 ~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~   73 (588)
T 3ics_A           35 GSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYI   73 (588)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCS
T ss_pred             cCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCc
Confidence            45799999999999999999987   5899999999743

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=96.46  E-value=0.012  Score=56.66  Aligned_cols=56  Identities=11%  Similarity=0.064  Sum_probs=42.2

Q ss_pred             CCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEec-CCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHH
Q 009873          231 PKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKS-DGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLL  304 (523)
Q Consensus       231 ~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~-~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl  304 (523)
                      +.|+++++++.|+++..+++      ++.+|++.+. +|+   ..++.+         +.||+|+|..-+..+|.
T Consensus       191 ~~gv~v~~~~~v~~i~~~~~------~v~~v~~~~~~~g~---~~~i~~---------D~vi~a~G~~p~~~~l~  247 (311)
T 2q0l_A          191 NDKIEFLTPYVVEEIKGDAS------GVSSLSIKNTATNE---KRELVV---------PGFFIFVGYDVNNAVLK  247 (311)
T ss_dssp             CTTEEEETTEEEEEEEEETT------EEEEEEEEETTTCC---EEEEEC---------SEEEECSCEEECCGGGB
T ss_pred             CCCeEEEeCCEEEEEECCCC------cEeEEEEEecCCCc---eEEEec---------CEEEEEecCccChhhhh
Confidence            46899999999999987655      7888888752 465   566776         99999999754444443

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=96.44  E-value=0.011  Score=60.58  Aligned_cols=32  Identities=31%  Similarity=0.427  Sum_probs=29.5

Q ss_pred             ccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           54 FDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        54 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      -.++|||+|..|+-+|..|++ |.+|.|+|+++
T Consensus       168 ~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~  200 (455)
T 2yqu_A          168 KRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMD  200 (455)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEecCC
Confidence            359999999999999999998 99999999986

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=96.43  E-value=0.0095  Score=60.89  Aligned_cols=34  Identities=18%  Similarity=0.291  Sum_probs=31.3

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      ...+++|||+|..|+-+|..|++ |.+|.|+|+++
T Consensus       148 ~~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~  182 (447)
T 1nhp_A          148 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILD  182 (447)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCc
Confidence            35689999999999999999998 99999999986

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=96.34  E-value=0.011  Score=60.86  Aligned_cols=31  Identities=29%  Similarity=0.472  Sum_probs=28.8

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .++|||+|..|+-+|..|++ |.+|.++|+++
T Consensus       176 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~  207 (468)
T 2qae_A          176 TMVVIGGGVIGLELGSVWARLGAEVTVVEFAP  207 (468)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCEEEEEecCC
Confidence            58999999999999999998 99999999986

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=96.33  E-value=0.0014  Score=70.39  Aligned_cols=34  Identities=24%  Similarity=0.396  Sum_probs=31.4

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-c--------CeeEEEecCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-N--------FSVLLVERGG   85 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g--------~~VlvlE~G~   85 (523)
                      ...+|+|||||++|+++|++|++ |        ++|+|+|+.+
T Consensus        55 ~~~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E~~~   97 (721)
T 3ayj_A           55 GNYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADP   97 (721)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCT
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEEeccC
Confidence            35789999999999999999998 8        9999999986

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=96.27  E-value=0.012  Score=61.02  Aligned_cols=31  Identities=32%  Similarity=0.445  Sum_probs=29.0

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .++|||+|..|+-+|..|++ |.+|.++|+++
T Consensus       176 ~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~  207 (492)
T 3ic9_A          176 SVAVFGPGVIGLELGQALSRLGVIVKVFGRSG  207 (492)
T ss_dssp             EEEEESSCHHHHHHHHHHHHTTCEEEEECCTT
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEEECC
Confidence            59999999999999999999 99999999986

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=96.25  E-value=0.0084  Score=61.85  Aligned_cols=32  Identities=25%  Similarity=0.359  Sum_probs=29.5

Q ss_pred             ccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           54 FDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        54 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      -.++|||+|..|+-+|..|++ |.+|.|+|+++
T Consensus       184 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~  216 (478)
T 1v59_A          184 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQP  216 (478)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCC
Confidence            369999999999999999999 99999999986

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=96.24  E-value=0.013  Score=61.07  Aligned_cols=54  Identities=22%  Similarity=0.445  Sum_probs=41.9

Q ss_pred             CCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEec-CCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHH
Q 009873          232 KNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKS-DGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLL  303 (523)
Q Consensus       232 ~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~-~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lL  303 (523)
                      .|+++++++.|++|.-+++      ++++|++.+. +|+   ..++.+         +.||+|+|...++.+|
T Consensus       404 ~gV~v~~~~~v~~i~~~~~------~v~~v~~~~~~~g~---~~~i~~---------D~vi~a~G~~pn~~~l  458 (521)
T 1hyu_A          404 KNVDIILNAQTTEVKGDGS------KVVGLEYRDRVSGD---IHSVAL---------AGIFVQIGLLPNTHWL  458 (521)
T ss_dssp             TTEEEECSEEEEEEEECSS------SEEEEEEEETTTCC---EEEEEC---------SEEEECCCEEESCGGG
T ss_pred             CCcEEEeCCEEEEEEcCCC------cEEEEEEEeCCCCc---eEEEEc---------CEEEECcCCCCCchHH
Confidence            6899999999999986655      8899998873 466   667877         9999999965444433

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=96.23  E-value=0.016  Score=60.03  Aligned_cols=31  Identities=35%  Similarity=0.455  Sum_probs=28.7

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .++|||+|..|+-+|..|++ |.+|.++|+++
T Consensus       200 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~  231 (491)
T 3urh_A          200 SMIVVGGGVIGLELGSVWARLGAKVTVVEFLD  231 (491)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCEEEEEeccc
Confidence            58999999999999999998 99999999886

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=96.21  E-value=0.0099  Score=60.91  Aligned_cols=32  Identities=28%  Similarity=0.551  Sum_probs=29.8

Q ss_pred             ccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           54 FDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        54 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      -.++|||+|..|+-+|..|++ |.+|.|+|+++
T Consensus       171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~  203 (455)
T 1ebd_A          171 KSLVVIGGGYIGIELGTAYANFGTKVTILEGAG  203 (455)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC
Confidence            469999999999999999998 99999999985

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=96.16  E-value=0.0029  Score=64.62  Aligned_cols=31  Identities=19%  Similarity=0.416  Sum_probs=28.3

Q ss_pred             EEEECCCCchHHHHhhhhc-c--CeeEEEecCCC
Q 009873           56 YIVVGGGTTGCPLAATLSD-N--FSVLLVERGGS   86 (523)
Q Consensus        56 vIIVGsG~aG~~~A~~Lae-g--~~VlvlE~G~~   86 (523)
                      |||||||++|+++|.+|++ |  .+|+|+|+++.
T Consensus         3 VvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~   36 (437)
T 4eqs_A            3 IVVVGAVAGGATCASQIRRLDKESDIIIFEKDRD   36 (437)
T ss_dssp             EEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSC
T ss_pred             EEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCC
Confidence            8999999999999999988 6  68999999863

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=96.12  E-value=0.024  Score=54.86  Aligned_cols=53  Identities=13%  Similarity=0.276  Sum_probs=40.0

Q ss_pred             CCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEe-cCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHH
Q 009873          231 PKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIK-SDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQL  302 (523)
Q Consensus       231 ~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~-~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~l  302 (523)
                      +.|++++++++|++|..+ +      ++.+|++.+ .+|+   ..++.+         +.||+|+|.-.++.+
T Consensus       200 ~~gv~i~~~~~v~~i~~~-~------~v~~v~~~~~~~g~---~~~i~~---------D~vi~a~G~~p~~~~  253 (325)
T 2q7v_A          200 NPKMKFIWDTAVEEIQGA-D------SVSGVKLRNLKTGE---VSELAT---------DGVFIFIGHVPNTAF  253 (325)
T ss_dssp             CTTEEEECSEEEEEEEES-S------SEEEEEEEETTTCC---EEEEEC---------SEEEECSCEEESCGG
T ss_pred             cCCceEecCCceEEEccC-C------cEEEEEEEECCCCc---EEEEEc---------CEEEEccCCCCChHH
Confidence            468999999999999864 3      688898875 2466   567776         999999986544444

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=96.12  E-value=0.0023  Score=67.67  Aligned_cols=34  Identities=24%  Similarity=0.410  Sum_probs=30.5

Q ss_pred             ccEEEECCCCchHHHHhhhhc---cCeeEEEecCCCC
Q 009873           54 FDYIVVGGGTTGCPLAATLSD---NFSVLLVERGGSP   87 (523)
Q Consensus        54 ~DvIIVGsG~aG~~~A~~Lae---g~~VlvlE~G~~~   87 (523)
                      .||+|||||++|+++|.+|++   +.+|+|+|+.+..
T Consensus         2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~   38 (565)
T 3ntd_A            2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGEYV   38 (565)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCS
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCc
Confidence            379999999999999999987   5899999999743

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=96.12  E-value=0.025  Score=54.98  Aligned_cols=31  Identities=29%  Similarity=0.477  Sum_probs=29.1

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .|+|||+|..|+-+|..|++ +.+|.++++++
T Consensus       154 ~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~  185 (335)
T 2zbw_A          154 RVLIVGGGDSAVDWALNLLDTARRITLIHRRP  185 (335)
T ss_dssp             EEEEECSSHHHHHHHHHTTTTSSEEEEECSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhhCCEEEEEEcCC
Confidence            69999999999999999999 89999999875

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=96.09  E-value=0.016  Score=59.34  Aligned_cols=31  Identities=26%  Similarity=0.302  Sum_probs=28.9

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .++|||+|..|+-+|..|++ |.+|.|+|+++
T Consensus       169 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~  200 (450)
T 1ges_A          169 RVAVVGAGYIGVELGGVINGLGAKTHLFEMFD  200 (450)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCEEEEEEeCC
Confidence            69999999999999999998 99999999885

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=96.06  E-value=0.03  Score=54.37  Aligned_cols=56  Identities=11%  Similarity=0.207  Sum_probs=41.7

Q ss_pred             CCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEec-CCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHH
Q 009873          231 PKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKS-DGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQL  302 (523)
Q Consensus       231 ~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~-~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~l  302 (523)
                      +.|+++++++.|+++..++++.    ++.+|++.+. +|+   ..++.+         +.||+|+|.-.+..+
T Consensus       207 ~~gv~i~~~~~v~~i~~~~~~~----~v~~v~~~~~~~g~---~~~i~~---------D~vi~a~G~~p~~~~  263 (333)
T 1vdc_A          207 NPKIDVIWNSSVVEAYGDGERD----VLGGLKVKNVVTGD---VSDLKV---------SGLFFAIGHEPATKF  263 (333)
T ss_dssp             CTTEEEECSEEEEEEEESSSSS----SEEEEEEEETTTCC---EEEEEC---------SEEEECSCEEESCGG
T ss_pred             CCCeeEecCCceEEEeCCCCcc----ceeeEEEEecCCCc---eEEEec---------CEEEEEeCCccchHH
Confidence            5789999999999998765422    5778888753 465   566776         999999997655444

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=95.92  E-value=0.0034  Score=63.15  Aligned_cols=58  Identities=5%  Similarity=-0.066  Sum_probs=41.4

Q ss_pred             hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHhhC
Q 009873          228 AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSG  307 (523)
Q Consensus       228 ~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~SG  307 (523)
                      ..++.++++++++++..+..+.+.       ..|+  ..+|+     ++.+         +.||+++|-- .+.++..||
T Consensus       211 ~l~~~gi~v~~~~~v~~v~~~~~~-------~~v~--~~~g~-----~i~~---------D~vi~~~g~~-~~~~~~~~g  266 (401)
T 3vrd_B          211 GTENALIEWHPGPDAAVVKTDTEA-------MTVE--TSFGE-----TFKA---------AVINLIPPQR-AGKIAQSAS  266 (401)
T ss_dssp             TSTTCSEEEECTTTTCEEEEETTT-------TEEE--ETTSC-----EEEC---------SEEEECCCEE-ECHHHHHTT
T ss_pred             HHHhcCcEEEeCceEEEEEecccc-------eEEE--cCCCc-----EEEe---------eEEEEecCcC-CchhHhhcc
Confidence            456789999999999998876652       2233  33566     4666         8999988853 456788888


Q ss_pred             CC
Q 009873          308 IG  309 (523)
Q Consensus       308 ig  309 (523)
                      +.
T Consensus       267 l~  268 (401)
T 3vrd_B          267 LT  268 (401)
T ss_dssp             CC
T ss_pred             cc
Confidence            74

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=95.91  E-value=0.0045  Score=64.03  Aligned_cols=33  Identities=30%  Similarity=0.538  Sum_probs=30.2

Q ss_pred             cccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           53 SFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        53 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .-+++|||+|..|+-+|..|++ |.+|.|+|+++
T Consensus       186 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~  219 (480)
T 3cgb_A          186 VEDVTIIGGGAIGLEMAETFVELGKKVRMIERND  219 (480)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHHTTCEEEEECCGG
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCC
Confidence            3479999999999999999998 99999999985

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=95.90  E-value=0.022  Score=58.78  Aligned_cols=55  Identities=15%  Similarity=0.239  Sum_probs=38.4

Q ss_pred             CCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecC-CCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHH
Q 009873          231 PKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSD-GSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLL  303 (523)
Q Consensus       231 ~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~-g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lL  303 (523)
                      +.|++|++++.|+++..++++     + ..|++.+.. |+   ..++.+         +.||+|+|---+..+|
T Consensus       239 ~~Gv~i~~~~~v~~i~~~~~~-----~-~~v~~~~~~~~~---~~~~~~---------D~vi~a~G~~p~~~~l  294 (483)
T 3dgh_A          239 ERGIPFLRKTVPLSVEKQDDG-----K-LLVKYKNVETGE---ESEDVY---------DTVLWAIGRKGLVDDL  294 (483)
T ss_dssp             HTTCCEEETEEEEEEEECTTS-----C-EEEEEEETTTCC---EEEEEE---------SEEEECSCEEECCGGG
T ss_pred             hCCCEEEeCCEEEEEEEcCCC-----c-EEEEEecCCCCc---eeEEEc---------CEEEECcccccCcCcC
Confidence            456789999999999876552     3 346666643 44   556777         9999999975444443

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=95.89  E-value=0.015  Score=59.52  Aligned_cols=31  Identities=29%  Similarity=0.547  Sum_probs=29.2

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .++|||+|..|+-+|..|++ |.+|.++|+++
T Consensus       151 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~  182 (452)
T 2cdu_A          151 TITIIGSGYIGAELAEAYSNQNYNVNLIDGHE  182 (452)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred             eEEEECcCHHHHHHHHHHHhcCCEEEEEEcCC
Confidence            59999999999999999998 99999999986

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=95.86  E-value=0.052  Score=55.75  Aligned_cols=31  Identities=29%  Similarity=0.425  Sum_probs=28.9

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .++|||+|..|+-+|..|++ |.+|.|+|+++
T Consensus       180 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~  211 (474)
T 1zmd_A          180 KMVVIGAGVIGVELGSVWQRLGADVTAVEFLG  211 (474)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCEEEEEeccC
Confidence            59999999999999999998 99999999986

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=95.84  E-value=0.024  Score=58.63  Aligned_cols=54  Identities=9%  Similarity=0.108  Sum_probs=37.4

Q ss_pred             CCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecC-CCCCceeEEEecCCCCCCCCCcEEEecCCchhHHH
Q 009873          231 PKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSD-GSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQL  302 (523)
Q Consensus       231 ~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~-g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~l  302 (523)
                      +.|+++++++.|+++...++      ....|++.+.+ |+   ..++.+         +.||+|+|-.-+..+
T Consensus       237 ~~gv~~~~~~~v~~i~~~~~------~~~~v~~~~~~~g~---~~~~~~---------D~vi~a~G~~p~~~~  291 (488)
T 3dgz_A          237 SHGTQFLKGCVPSHIKKLPT------NQLQVTWEDHASGK---EDTGTF---------DTVLWAIGRVPETRT  291 (488)
T ss_dssp             HTTCEEEETEEEEEEEECTT------SCEEEEEEETTTTE---EEEEEE---------SEEEECSCEEESCGG
T ss_pred             HCCCEEEeCCEEEEEEEcCC------CcEEEEEEeCCCCe---eEEEEC---------CEEEEcccCCcccCc
Confidence            45788999999999987554      23346665533 44   456777         999999997654444

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=95.83  E-value=0.018  Score=58.07  Aligned_cols=32  Identities=41%  Similarity=0.518  Sum_probs=29.8

Q ss_pred             ccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           54 FDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        54 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      -.++|||+|..|+-+|..|++ |.+|.++|+++
T Consensus       146 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~  178 (408)
T 2gqw_A          146 SRLLIVGGGVIGLELAATARTAGVHVSLVETQP  178 (408)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCC
Confidence            469999999999999999999 99999999986

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=95.83  E-value=0.023  Score=58.61  Aligned_cols=31  Identities=23%  Similarity=0.407  Sum_probs=29.1

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .++|||+|..|+-+|..|++ |.+|.|+|+.+
T Consensus       187 ~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~  218 (482)
T 1ojt_A          187 KLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMD  218 (482)
T ss_dssp             EEEEESCSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEEECC
Confidence            69999999999999999998 99999999986

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=95.79  E-value=0.017  Score=59.56  Aligned_cols=31  Identities=35%  Similarity=0.489  Sum_probs=28.2

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .++|||+|..|+-+|..|++ |.+|.++|+++
T Consensus       187 ~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~  218 (479)
T 2hqm_A          187 KVVVVGAGYIGIELAGVFHGLGSETHLVIRGE  218 (479)
T ss_dssp             EEEEECSSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCceEEEEeCC
Confidence            58999999999999999988 89999999885

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=95.78  E-value=0.046  Score=56.04  Aligned_cols=31  Identities=26%  Similarity=0.390  Sum_probs=28.9

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .++|||+|..|+-+|..|++ |.+|.|+|+++
T Consensus       173 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~  204 (464)
T 2a8x_A          173 SIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLP  204 (464)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             eEEEECCcHHHHHHHHHHHHcCCeEEEEEcCC
Confidence            59999999999999999998 99999999986

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=95.75  E-value=0.036  Score=58.34  Aligned_cols=31  Identities=29%  Similarity=0.450  Sum_probs=29.4

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .++|||+|..|+-+|..|++ |.+|.++|+.+
T Consensus       153 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~  184 (565)
T 3ntd_A          153 HATVVGGGFIGLEMMESLHHLGIKTTLLELAD  184 (565)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCcEEEEEcCC
Confidence            69999999999999999998 99999999986

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=95.74  E-value=0.0053  Score=63.77  Aligned_cols=34  Identities=9%  Similarity=0.301  Sum_probs=30.8

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      ++..|||||||.+|+.+|.+|++ +++|+|||+.+
T Consensus        41 ~KprVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~   75 (502)
T 4g6h_A           41 DKPNVLILGSGWGAISFLKHIDTKKYNVSIISPRS   75 (502)
T ss_dssp             SSCEEEEECSSHHHHHHHHHSCTTTCEEEEEESSS
T ss_pred             CCCCEEEECCcHHHHHHHHHhhhCCCcEEEECCCC
Confidence            34579999999999999999998 89999999986

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=95.73  E-value=0.0052  Score=61.53  Aligned_cols=35  Identities=17%  Similarity=0.271  Sum_probs=31.0

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGS   86 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~   86 (523)
                      ++.-|||||+|++|+.+|.+|.. +.+|+|+|+.+.
T Consensus         8 ~~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~   43 (385)
T 3klj_A            8 KSTKILILGAGPAGFSAAKAALGKCDDITMINSEKY   43 (385)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSS
T ss_pred             CCCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCC
Confidence            34569999999999999999976 799999999873

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=95.71  E-value=0.049  Score=55.82  Aligned_cols=31  Identities=26%  Similarity=0.349  Sum_probs=28.8

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .++|||+|..|+-+|..|++ |.+|.|+|+.+
T Consensus       168 ~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~  199 (463)
T 2r9z_A          168 RVAIIGAGYIGIELAGLLRSFGSEVTVVALED  199 (463)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCEEEEEEcCC
Confidence            59999999999999999998 99999999885

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=95.69  E-value=0.056  Score=55.26  Aligned_cols=33  Identities=18%  Similarity=0.408  Sum_probs=29.5

Q ss_pred             cccEEEECCCCchHHHHhhhhc---cCeeEEEecCC
Q 009873           53 SFDYIVVGGGTTGCPLAATLSD---NFSVLLVERGG   85 (523)
Q Consensus        53 ~~DvIIVGsG~aG~~~A~~Lae---g~~VlvlE~G~   85 (523)
                      .-.|+|||+|..|+=+|..|++   +.+|.++++.+
T Consensus       227 ~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~  262 (463)
T 3s5w_A          227 PMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRAS  262 (463)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSS
T ss_pred             CCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCC
Confidence            3479999999999999999987   58999999986

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=95.67  E-value=0.034  Score=57.51  Aligned_cols=31  Identities=29%  Similarity=0.409  Sum_probs=29.3

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .++|||+|..|+-+|..|++ |.+|.|+|+++
T Consensus       196 ~vvVIGgG~ig~E~A~~l~~~g~~Vtlv~~~~  227 (490)
T 2bc0_A          196 RVAVVGAGYIGVELAEAFQRKGKEVVLIDVVD  227 (490)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCeEEEEEccc
Confidence            59999999999999999998 99999999986

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=95.64  E-value=0.031  Score=57.42  Aligned_cols=31  Identities=23%  Similarity=0.389  Sum_probs=29.0

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .++|||+|..|+-+|..|++ |.+|.|+|+++
T Consensus       179 ~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~  210 (470)
T 1dxl_A          179 KLVVIGAGYIGLEMGSVWGRIGSEVTVVEFAS  210 (470)
T ss_dssp             EEEESCCSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC
Confidence            59999999999999999998 99999999986

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=95.56  E-value=0.019  Score=59.64  Aligned_cols=31  Identities=29%  Similarity=0.513  Sum_probs=27.0

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .++|||+|..|+-+|..|++ |.+|.++|+++
T Consensus       184 ~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~  215 (499)
T 1xdi_A          184 HLIVVGSGVTGAEFVDAYTELGVPVTVVASQD  215 (499)
T ss_dssp             SEEEESCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC
Confidence            58899999999999988888 88999998875

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=95.50  E-value=0.036  Score=57.46  Aligned_cols=31  Identities=19%  Similarity=0.366  Sum_probs=28.3

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .++|||+|..|+-+|..|++ |.+|.|+|+++
T Consensus       178 ~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~  209 (500)
T 1onf_A          178 KIGIVGSGYIAVELINVIKRLGIDSYIFARGN  209 (500)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCEEEEECSSS
T ss_pred             eEEEECChHHHHHHHHHHHHcCCeEEEEecCC
Confidence            58999999999999999998 89999999876

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=95.43  E-value=0.0067  Score=61.73  Aligned_cols=58  Identities=17%  Similarity=0.217  Sum_probs=42.5

Q ss_pred             hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHhhC
Q 009873          228 AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSG  307 (523)
Q Consensus       228 ~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~SG  307 (523)
                      ..++.|+++++++.|+++.  .+         ++.+.+.+|+   ..++.+         +.||+++|.-. +.++..+|
T Consensus       209 ~l~~~GV~~~~~~~v~~v~--~~---------~~~~~~~~g~---~~~i~~---------d~vi~~~G~~~-~~~~~~~~  264 (430)
T 3hyw_A          209 LFAERNIDWIANVAVKAIE--PD---------KVIYEDLNGN---THEVPA---------KFTMFMPSFQG-PEVVASAG  264 (430)
T ss_dssp             HHHHTTCEEECSCEEEEEC--SS---------EEEEECTTSC---EEEEEC---------SEEEEECEEEC-CHHHHTTC
T ss_pred             HHHhCCeEEEeCceEEEEe--CC---------ceEEEeeCCC---ceEeec---------ceEEEeccCCC-chHHHhcc
Confidence            4567899999999999983  33         2455565676   677887         99999999644 46677776


Q ss_pred             CC
Q 009873          308 IG  309 (523)
Q Consensus       308 ig  309 (523)
                      ..
T Consensus       265 ~~  266 (430)
T 3hyw_A          265 DK  266 (430)
T ss_dssp             TT
T ss_pred             cc
Confidence            43

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=95.43  E-value=0.041  Score=56.21  Aligned_cols=31  Identities=23%  Similarity=0.245  Sum_probs=29.2

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .++|||+|..|+-+|..|++ |.+|.++|+++
T Consensus       149 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~  180 (452)
T 3oc4_A          149 TVAVIGAGPIGMEAIDFLVKMKKTVHVFESLE  180 (452)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEEccC
Confidence            59999999999999999999 99999999986

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=95.30  E-value=0.04  Score=56.99  Aligned_cols=31  Identities=26%  Similarity=0.405  Sum_probs=27.0

Q ss_pred             cEEEECCCCchHHHHhhhhc-----cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-----NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-----g~~VlvlE~G~   85 (523)
                      .++|||+|..|+-+|..|++     |.+|.++|+.+
T Consensus       182 ~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~  217 (493)
T 1m6i_A          182 SITIIGGGFLGSELACALGRKARALGTEVIQLFPEK  217 (493)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCc
Confidence            59999999999999999875     47899999874

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=95.25  E-value=0.042  Score=53.10  Aligned_cols=31  Identities=23%  Similarity=0.380  Sum_probs=28.9

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .++|||+|..|+-+|..|++ +.+|.++++++
T Consensus       156 ~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~  187 (332)
T 3lzw_A          156 RVAILGGGDSAVDWALMLEPIAKEVSIIHRRD  187 (332)
T ss_dssp             EEEEECSSHHHHHHHHHHTTTBSEEEEECSSS
T ss_pred             EEEEECCCHhHHHHHHHHHhhCCeEEEEEecC
Confidence            59999999999999999999 89999999875

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=95.22  E-value=0.086  Score=54.19  Aligned_cols=31  Identities=26%  Similarity=0.340  Sum_probs=28.5

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .++|||+|..|+-+|..|++ |.+|.++|+++
T Consensus       189 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~  220 (478)
T 3dk9_A          189 RSVIVGAGYIAVEMAGILSALGSKTSLMIRHD  220 (478)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             cEEEECCCHHHHHHHHHHHHcCCeEEEEEeCC
Confidence            58999999999999999998 89999999875

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=95.06  E-value=0.08  Score=51.46  Aligned_cols=32  Identities=38%  Similarity=0.450  Sum_probs=29.3

Q ss_pred             ccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           54 FDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        54 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      -.++|||+|..|+-+|..|++ +.+|.++++++
T Consensus       156 ~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~  188 (335)
T 2a87_A          156 QDIAVIGGGDSAMEEATFLTRFARSVTLVHRRD  188 (335)
T ss_dssp             CEEEEECSSHHHHHHHHHHTTTCSEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCC
Confidence            369999999999999999999 89999999875

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=95.00  E-value=0.089  Score=54.20  Aligned_cols=32  Identities=28%  Similarity=0.540  Sum_probs=28.9

Q ss_pred             ccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           54 FDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        54 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      -.++|||+|..|+-+|..|++ |.+|.++|+++
T Consensus       192 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~  224 (484)
T 3o0h_A          192 KSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGD  224 (484)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCCeEEEEECCC
Confidence            369999999999999999988 89999999885

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=94.99  E-value=0.024  Score=58.09  Aligned_cols=32  Identities=22%  Similarity=0.402  Sum_probs=28.6

Q ss_pred             ccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           54 FDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        54 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      -.++|||+|..|+-+|..|++ |.+|.++|+++
T Consensus       171 ~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~  203 (463)
T 4dna_A          171 ESILIAGGGYIAVEFANIFHGLGVKTTLIYRGK  203 (463)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC
Confidence            368999999999999999988 89999999875

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=94.98  E-value=0.14  Score=52.47  Aligned_cols=31  Identities=23%  Similarity=0.319  Sum_probs=28.8

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .++|||+|..|+-+|..|++ |.+|.++|+++
T Consensus       182 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~  213 (476)
T 3lad_A          182 KLGVIGAGVIGLELGSVWARLGAEVTVLEAMD  213 (476)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Confidence            59999999999999999998 89999999986

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=94.89  E-value=0.078  Score=56.13  Aligned_cols=31  Identities=32%  Similarity=0.549  Sum_probs=29.2

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .++|||+|..|+-+|..|++ |.+|.++|+++
T Consensus       189 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~  220 (588)
T 3ics_A          189 HATVIGGGFIGVEMVENLRERGIEVTLVEMAN  220 (588)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Confidence            59999999999999999999 99999999886

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=94.88  E-value=0.042  Score=56.79  Aligned_cols=56  Identities=21%  Similarity=0.319  Sum_probs=38.0

Q ss_pred             CCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHH-H-HHhhCC
Q 009873          231 PKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQ-L-LLLSGI  308 (523)
Q Consensus       231 ~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~-l-Ll~SGi  308 (523)
                      +.|++|++++.|++|..+++      ....|++  .+|+     ++.+         +.||+|+|..-+.. | |..+|+
T Consensus       243 ~~GV~i~~~~~v~~i~~~~~------~~~~v~~--~~G~-----~i~~---------D~vv~a~G~~p~~~~L~l~~~gl  300 (490)
T 1fec_A          243 ANGINVRTHENPAKVTKNAD------GTRHVVF--ESGA-----EADY---------DVVMLAIGRVPRSQTLQLEKAGV  300 (490)
T ss_dssp             HTTEEEEETCCEEEEEECTT------SCEEEEE--TTSC-----EEEE---------SEEEECSCEEESCTTSCGGGGTC
T ss_pred             hCCCEEEeCCEEEEEEEcCC------CEEEEEE--CCCc-----EEEc---------CEEEEccCCCcCccccCchhcCc
Confidence            56789999999999987654      2334544  3464     4676         99999999754443 3 444554

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=94.80  E-value=0.045  Score=56.11  Aligned_cols=31  Identities=19%  Similarity=0.306  Sum_probs=27.0

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .++|||+|..|+-+|..|++ |.+|.++|+++
T Consensus       178 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~  209 (467)
T 1zk7_A          178 RLAVIGSSVVALELAQAFARLGSKVTVLARNT  209 (467)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCEEEEEEECC
Confidence            58899999999999988888 88999999875

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=94.77  E-value=0.13  Score=53.55  Aligned_cols=30  Identities=23%  Similarity=0.316  Sum_probs=25.3

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERG   84 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G   84 (523)
                      .++|||+|..|+-+|..|++ |.+|.++|+.
T Consensus       212 ~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~  242 (519)
T 3qfa_A          212 KTLVVGASYVALECAGFLAGIGLDVTVMVRS  242 (519)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             eEEEECCcHHHHHHHHHHHHcCCeEEEEecc
Confidence            48888888888888888888 8888888874

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=94.71  E-value=0.065  Score=54.96  Aligned_cols=31  Identities=19%  Similarity=0.382  Sum_probs=28.2

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .++|||+|..|+-+|..|++ |.+|.++|+++
T Consensus       174 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~  205 (466)
T 3l8k_A          174 DMVIIGAGYIGLEIASIFRLMGVQTHIIEMLD  205 (466)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCEEEEEEeCC
Confidence            59999999999999999988 89999999875

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=94.62  E-value=0.1  Score=53.93  Aligned_cols=57  Identities=14%  Similarity=0.323  Sum_probs=38.5

Q ss_pred             CCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHH-H-HHhhC
Q 009873          230 NPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQ-L-LLLSG  307 (523)
Q Consensus       230 ~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~-l-Ll~SG  307 (523)
                      ++.|++++++++|++|..+++      ....|++  .+|+     ++.+         +.||+|+|..-+.. | |..+|
T Consensus       246 ~~~GV~i~~~~~v~~i~~~~~------~~~~v~~--~~G~-----~i~~---------D~vv~a~G~~p~~~~L~l~~~g  303 (495)
T 2wpf_A          246 TANGIEIMTNENPAKVSLNTD------GSKHVTF--ESGK-----TLDV---------DVVMMAIGRIPRTNDLQLGNVG  303 (495)
T ss_dssp             HHTTCEEEESCCEEEEEECTT------SCEEEEE--TTSC-----EEEE---------SEEEECSCEEECCGGGTGGGTT
T ss_pred             HhCCCEEEeCCEEEEEEEcCC------ceEEEEE--CCCc-----EEEc---------CEEEECCCCcccccccchhhcC
Confidence            356788999999999987654      3344544  2464     4676         99999999765444 3 34445


Q ss_pred             C
Q 009873          308 I  308 (523)
Q Consensus       308 i  308 (523)
                      +
T Consensus       304 l  304 (495)
T 2wpf_A          304 V  304 (495)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=93.97  E-value=0.19  Score=53.21  Aligned_cols=30  Identities=20%  Similarity=0.237  Sum_probs=24.8

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERG   84 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G   84 (523)
                      .++|||+|..|+-+|..|++ |.+|.|+|++
T Consensus       288 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~  318 (598)
T 2x8g_A          288 KTLVIGASYVALECAGFLASLGGDVTVMVRS  318 (598)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCEEEEEECC
Confidence            48888888888888888887 7888888876

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=93.94  E-value=0.19  Score=52.44  Aligned_cols=31  Identities=19%  Similarity=0.263  Sum_probs=28.5

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .++|||+|..|+=.|..++. |.+|.|+++..
T Consensus       225 ~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~~  256 (542)
T 4b1b_A          225 KTLVVGASYVALECSGFLNSLGYDVTVAVRSI  256 (542)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEEESSC
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCeEEEecccc
Confidence            49999999999999999999 99999998753

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=93.89  E-value=0.26  Score=55.39  Aligned_cols=59  Identities=12%  Similarity=0.039  Sum_probs=42.9

Q ss_pred             CCCeEEEeccEEEEEEEc-CCCCCCCceeeEEEEEe--c---CCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHH
Q 009873          231 PKNLVVLLNATVNNIIFS-NNGKANESRAHGIRFIK--S---DGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLL  304 (523)
Q Consensus       231 ~~g~~i~~~~~V~~l~~~-~~g~~~~~~v~GV~~~~--~---~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl  304 (523)
                      +.|++|++++.|++|.-+ ++      ++.+|++.+  .   +|+   ..++.+         +.||+|+|-.-+..++.
T Consensus       328 ~~GV~v~~~~~v~~i~~~~~~------~v~~v~~~~~~~~~~~G~---~~~i~~---------D~Vv~a~G~~P~~~l~~  389 (965)
T 2gag_A          328 ADGVQVISGSVVVDTEADENG------ELSAIVVAELDEARELGG---TQRFEA---------DVLAVAGGFNPVVHLHS  389 (965)
T ss_dssp             HTTCCEEETEEEEEEEECTTS------CEEEEEEEEECTTCCEEE---EEEEEC---------SEEEEECCEEECCHHHH
T ss_pred             hCCeEEEeCCEeEEEeccCCC------CEEEEEEEeccccCCCCc---eEEEEc---------CEEEECCCcCcChHHHH
Confidence            356778899999999864 33      788888875  2   243   456776         99999999776667766


Q ss_pred             hhC
Q 009873          305 LSG  307 (523)
Q Consensus       305 ~SG  307 (523)
                      ..|
T Consensus       390 ~~~  392 (965)
T 2gag_A          390 QRQ  392 (965)
T ss_dssp             HTT
T ss_pred             hCC
Confidence            554

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=93.11  E-value=0.14  Score=57.94  Aligned_cols=31  Identities=35%  Similarity=0.425  Sum_probs=28.4

Q ss_pred             cEEEECCCCchHHHHhhhhc-cC-eeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NF-SVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~-~VlvlE~G~   85 (523)
                      .|+|||+|..|+=+|..|++ |. +|.|+|+.+
T Consensus       334 ~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~  366 (1025)
T 1gte_A          334 AVIVLGAGDTAFDCATSALRCGARRVFLVFRKG  366 (1025)
T ss_dssp             EEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             cEEEECCChHHHHHHHHHHHcCCCEEEEEEecC
Confidence            79999999999999999988 85 899999875

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=92.94  E-value=0.17  Score=52.26  Aligned_cols=31  Identities=42%  Similarity=0.564  Sum_probs=26.7

Q ss_pred             cEEEECCCCchHHHHhhhhc-c--------------CeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-N--------------FSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g--------------~~VlvlE~G~   85 (523)
                      .++|||+|+.|+-+|..|++ .              .+|.|+|+++
T Consensus       219 ~vvVvGgG~tGvE~A~~l~~~~~~~l~~~~~~~~~~~~V~lve~~~  264 (502)
T 4g6h_A          219 SIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALP  264 (502)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHTHHHHCHHHHHHCEEEEECSSS
T ss_pred             ceEEECCCcchhhhHHHHHHHHHHHHHhhcccccccceeEEecccc
Confidence            49999999999999988875 2              5799999986

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=92.10  E-value=0.1  Score=43.65  Aligned_cols=31  Identities=23%  Similarity=0.439  Sum_probs=29.1

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .++|||.|..|..+|..|.+ |++|+++|+.+
T Consensus         9 ~viIiG~G~~G~~la~~L~~~g~~v~vid~~~   40 (140)
T 3fwz_A            9 HALLVGYGRVGSLLGEKLLASDIPLVVIETSR   40 (140)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEECCH
Confidence            59999999999999999998 99999999875

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=91.96  E-value=0.087  Score=44.92  Aligned_cols=32  Identities=25%  Similarity=0.382  Sum_probs=29.0

Q ss_pred             ccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           54 FDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        54 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      -.|+|||+|..|..+|..|.+ |.+|+++++..
T Consensus        20 ~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~   52 (155)
T 2g1u_A           20 KYIVIFGCGRLGSLIANLASSSGHSVVVVDKNE   52 (155)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            359999999999999999988 89999999864

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=91.89  E-value=0.087  Score=44.02  Aligned_cols=31  Identities=32%  Similarity=0.576  Sum_probs=28.7

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .++|+|+|..|..+|..|.+ |++|+++|+.+
T Consensus         8 ~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~   39 (141)
T 3llv_A            8 EYIVIGSEAAGVGLVRELTAAGKKVLAVDKSK   39 (141)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            49999999999999999998 99999999864

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=91.82  E-value=0.092  Score=50.39  Aligned_cols=31  Identities=26%  Similarity=0.414  Sum_probs=29.4

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .++|||+|..|+-+|..|++ |.+|.|+|+++
T Consensus       147 ~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~  178 (312)
T 4gcm_A          147 RLFVIGGGDSAVEEGTFLTKFADKVTIVHRRD  178 (312)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTCSEEEEECSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCEEEEEeccc
Confidence            59999999999999999999 99999999986

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=91.60  E-value=0.1  Score=43.19  Aligned_cols=31  Identities=29%  Similarity=0.505  Sum_probs=28.4

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .++|||+|..|..+|..|++ |.+|.++|+..
T Consensus         6 ~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~   37 (140)
T 1lss_A            6 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK   37 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            59999999999999999998 89999999853

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=91.29  E-value=0.1  Score=52.09  Aligned_cols=32  Identities=22%  Similarity=0.260  Sum_probs=30.1

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGGS   86 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~   86 (523)
                      .|+|||+|..|+-+|..|++ |.+|.|+|+.+.
T Consensus       148 ~vvVIGgG~~g~E~A~~l~~~g~~Vtvv~~~~~  180 (385)
T 3klj_A          148 KAFIIGGGILGIELAQAIIDSGTPASIGIILEY  180 (385)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCCEEEECSSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCc
Confidence            69999999999999999999 999999999874

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=90.83  E-value=0.13  Score=43.76  Aligned_cols=30  Identities=17%  Similarity=0.217  Sum_probs=28.1

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERG   84 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G   84 (523)
                      .++|+|+|..|..+|..|.+ |.+|+++|+.
T Consensus         5 ~vlI~G~G~vG~~la~~L~~~g~~V~vid~~   35 (153)
T 1id1_A            5 HFIVCGHSILAINTILQLNQRGQNVTVISNL   35 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Confidence            48999999999999999988 9999999986

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=90.62  E-value=0.12  Score=52.69  Aligned_cols=31  Identities=32%  Similarity=0.461  Sum_probs=29.6

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .++|||+|..|+-+|..|++ |.+|.|+|+++
T Consensus       173 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~  204 (458)
T 1lvl_A          173 HLVVVGGGYIGLELGIAYRKLGAQVSVVEARE  204 (458)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             eEEEECcCHHHHHHHHHHHHCCCeEEEEEcCC
Confidence            69999999999999999999 99999999986

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=90.30  E-value=0.57  Score=50.46  Aligned_cols=31  Identities=23%  Similarity=0.295  Sum_probs=28.7

Q ss_pred             cEEEEC--CCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVG--GGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVG--sG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .|+|||  +|..|+-+|..|++ |.+|.++|+.+
T Consensus       525 ~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~  558 (690)
T 3k30_A          525 KVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGA  558 (690)
T ss_dssp             EEEEEECSCSSHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             EEEEEcCCCCccHHHHHHHHHhCCCeeEEEeccc
Confidence            499999  99999999999999 99999999875

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=90.21  E-value=0.16  Score=48.56  Aligned_cols=31  Identities=29%  Similarity=0.460  Sum_probs=29.3

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .++|||+|..|+-+|..|++ |.+|.|+|+..
T Consensus       154 ~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~  185 (314)
T 4a5l_A          154 VLMVVGGGDAAMEEALHLTKYGSKVIILHRRD  185 (314)
T ss_dssp             EEEEECSSHHHHHHHHHHTTTSSEEEEECSSS
T ss_pred             eEEEECCChHHHHHHHHHHHhCCeeeeecccc
Confidence            59999999999999999999 99999999875

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=89.60  E-value=0.19  Score=40.12  Aligned_cols=31  Identities=32%  Similarity=0.472  Sum_probs=28.2

Q ss_pred             cEEEECCCCchHHHHhhhhc-c-CeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-N-FSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g-~~VlvlE~G~   85 (523)
                      .++|+|+|..|..+|..|.+ | .+|.++++..
T Consensus         7 ~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~   39 (118)
T 3ic5_A            7 NICVVGAGKIGQMIAALLKTSSNYSVTVADHDL   39 (118)
T ss_dssp             EEEEECCSHHHHHHHHHHHHCSSEEEEEEESCH
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCceEEEEeCCH
Confidence            49999999999999999988 8 8999999864

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=89.50  E-value=0.15  Score=50.35  Aligned_cols=32  Identities=38%  Similarity=0.711  Sum_probs=29.9

Q ss_pred             ccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           54 FDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        54 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      -.++|||+|..|+-+|..|++ |.+|.++|+++
T Consensus       144 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~  176 (367)
T 1xhc_A          144 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGA  176 (367)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCEEEEEeCCC
Confidence            369999999999999999999 99999999986

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=89.22  E-value=0.19  Score=41.71  Aligned_cols=31  Identities=26%  Similarity=0.421  Sum_probs=28.2

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .++|+|+|..|..+|..|.+ |.+|.++++..
T Consensus         8 ~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~   39 (144)
T 2hmt_A            8 QFAVIGLGRFGGSIVKELHRMGHEVLAVDINE   39 (144)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            39999999999999999988 89999999863

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=87.13  E-value=0.29  Score=47.89  Aligned_cols=31  Identities=26%  Similarity=0.468  Sum_probs=27.8

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .|+|||+|..|+-+|..|++ |.+|.++|+++
T Consensus       168 ~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~  199 (369)
T 3d1c_A          168 QYVVIGGNESGFDAAYQLAKNGSDIALYTSTT  199 (369)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECC--
T ss_pred             EEEEECCCcCHHHHHHHHHhcCCeEEEEecCC
Confidence            59999999999999999998 89999999986

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=86.87  E-value=0.43  Score=45.88  Aligned_cols=31  Identities=26%  Similarity=0.308  Sum_probs=28.5

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .+.|||+|..|+..|..|++ |.+|.++.|..
T Consensus         4 kI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (312)
T 3hn2_A            4 RIAIVGAGALGLYYGALLQRSGEDVHFLLRRD   35 (312)
T ss_dssp             CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc
Confidence            48999999999999999998 89999999864

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=86.86  E-value=0.4  Score=48.94  Aligned_cols=31  Identities=10%  Similarity=0.084  Sum_probs=29.2

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .|+|||+|..|+=+|..|++ +.+|.++++.+
T Consensus       199 ~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~  230 (464)
T 2xve_A          199 TVLLVGSSYSAEDIGSQCYKYGAKKLISCYRT  230 (464)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCSEEEEECSS
T ss_pred             EEEEEcCCCCHHHHHHHHHHhCCeEEEEEECC
Confidence            59999999999999999999 99999999875

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=86.70  E-value=0.27  Score=44.43  Aligned_cols=30  Identities=27%  Similarity=0.578  Sum_probs=28.1

Q ss_pred             EEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           56 YIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        56 vIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      |+|||+|..|..+|..|.+ |++|+++|+.+
T Consensus         3 iiIiG~G~~G~~la~~L~~~g~~v~vid~~~   33 (218)
T 3l4b_C            3 VIIIGGETTAYYLARSMLSRKYGVVIINKDR   33 (218)
T ss_dssp             EEEECCHHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             EEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            8999999999999999988 89999999864

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=86.61  E-value=0.35  Score=49.06  Aligned_cols=31  Identities=26%  Similarity=0.395  Sum_probs=29.0

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCe-eEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFS-VLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~-VlvlE~G~   85 (523)
                      .|+|||+|..|+=+|..|++ +.+ |.|+++++
T Consensus       214 ~VvVvG~G~sg~e~A~~l~~~~~~~V~l~~r~~  246 (447)
T 2gv8_A          214 SVLVVGGASSANDLVRHLTPVAKHPIYQSLLGG  246 (447)
T ss_dssp             CEEEECSSHHHHHHHHHHTTTSCSSEEEECTTC
T ss_pred             EEEEEccCcCHHHHHHHHHHHhCCcEEEEeCCC
Confidence            69999999999999999999 888 99999985

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=85.98  E-value=0.41  Score=48.48  Aligned_cols=31  Identities=23%  Similarity=0.398  Sum_probs=29.6

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .++|||+|..|+-+|..|++ |.+|.|+|+++
T Consensus       149 ~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~  180 (437)
T 4eqs_A          149 KVLVVGAGYVSLEVLENLYERGLHPTLIHRSD  180 (437)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCEEEEEESSS
T ss_pred             EEEEECCccchhhhHHHHHhcCCcceeeeeec
Confidence            69999999999999999999 99999999986

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=85.95  E-value=0.41  Score=46.20  Aligned_cols=31  Identities=29%  Similarity=0.488  Sum_probs=28.6

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .+.|||+|..|+..|..|++ |.+|.++.|..
T Consensus         4 kI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (320)
T 3i83_A            4 NILVIGTGAIGSFYGALLAKTGHCVSVVSRSD   35 (320)
T ss_dssp             EEEEESCCHHHHHHHHHHHHTTCEEEEECSTT
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh
Confidence            48999999999999999999 89999999864

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=85.80  E-value=0.78  Score=43.62  Aligned_cols=31  Identities=6%  Similarity=0.243  Sum_probs=23.1

Q ss_pred             cEEEECCCCc-hHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTT-GCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~a-G~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .++|||+|.. +.-+|..+.. +.+|++++++.
T Consensus       148 ~~~VIggG~~~~~e~a~~~~~~~~~v~i~~~~~  180 (304)
T 4fk1_A          148 PLIIISENEDHTLHMTKLVYNWSTDLVIATNGN  180 (304)
T ss_dssp             CEEEECCSHHHHHHHHHHHTTTCSCEEEECSSC
T ss_pred             ceeeecCCCchhhhHHHHHHhCCceEEEEeccc
Confidence            5788888865 5567777777 78999988764

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=85.72  E-value=0.37  Score=46.35  Aligned_cols=31  Identities=29%  Similarity=0.459  Sum_probs=28.2

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      -|.|||+|..|...|..++. |++|+|+|..+
T Consensus         8 ~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~   39 (319)
T 3ado_A            8 DVLIVGSGLVGRSWAMLFASGGFRVKLYDIEP   39 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCeEEEEECCH
Confidence            48999999999999999998 99999999753

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=85.41  E-value=0.44  Score=48.33  Aligned_cols=31  Identities=26%  Similarity=0.602  Sum_probs=29.6

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .++|||+|..|+-+|..|++ |.+|.++|+++
T Consensus       150 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~  181 (449)
T 3kd9_A          150 NVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGE  181 (449)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCeEEEEEcCC
Confidence            79999999999999999998 99999999986

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=85.36  E-value=0.49  Score=49.42  Aligned_cols=32  Identities=19%  Similarity=0.329  Sum_probs=30.1

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGGS   86 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~   86 (523)
                      .|+|||+|..|+-+|..|++ +.+|.|+++.+.
T Consensus       187 rV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~~  219 (545)
T 3uox_A          187 RVGVIGTGATGVQIIPIAAETAKELYVFQRTPN  219 (545)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTBSEEEEEESSCC
T ss_pred             eEEEECCCccHHHHHHHHHhhCCEEEEEEcCCC
Confidence            59999999999999999999 899999999974

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=85.07  E-value=0.51  Score=49.20  Aligned_cols=32  Identities=22%  Similarity=0.258  Sum_probs=30.1

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGGS   86 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~   86 (523)
                      .|+|||+|..|+-+|..|++ +.+|.|+++.+.
T Consensus       180 rV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~  212 (540)
T 3gwf_A          180 RVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQ  212 (540)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTCSEEEEEESSCC
T ss_pred             eEEEECCCchHHHHHHHHHhhCCEEEEEECCCC
Confidence            59999999999999999999 899999999974

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=84.80  E-value=0.48  Score=47.47  Aligned_cols=32  Identities=38%  Similarity=0.726  Sum_probs=29.9

Q ss_pred             ccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           54 FDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        54 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      -.++|||+|..|+-+|..|++ |.+|.++|+.+
T Consensus       144 ~~vvViGgG~~g~E~A~~l~~~g~~Vtvv~~~~  176 (410)
T 3ef6_A          144 TRLLIVGGGLIGCEVATTARKLGLSVTILEAGD  176 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Confidence            369999999999999999998 99999999986

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=84.41  E-value=0.54  Score=49.15  Aligned_cols=32  Identities=16%  Similarity=0.359  Sum_probs=30.0

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGGS   86 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~   86 (523)
                      .|+|||+|..|+-+|..|++ +.+|.|++|.+.
T Consensus       193 rV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~  225 (549)
T 4ap3_A          193 RVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSAN  225 (549)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHBSEEEEEESSCC
T ss_pred             EEEEECCCchHHHHHHHHHhhCCEEEEEECCCC
Confidence            59999999999999999999 899999999973

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=84.24  E-value=0.48  Score=48.33  Aligned_cols=31  Identities=32%  Similarity=0.628  Sum_probs=28.8

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      -+||+|+|-.|..+|..|++ |++|+|||+.+
T Consensus         5 ~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~   36 (461)
T 4g65_A            5 KIIILGAGQVGGTLAENLVGENNDITIVDKDG   36 (461)
T ss_dssp             EEEEECCSHHHHHHHHHTCSTTEEEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Confidence            39999999999999999987 99999999875

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=84.06  E-value=0.6  Score=42.38  Aligned_cols=30  Identities=23%  Similarity=0.338  Sum_probs=27.6

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERG   84 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G   84 (523)
                      -|+|||+|-.|...|..|.+ |.+|.|++..
T Consensus        33 ~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~   63 (223)
T 3dfz_A           33 SVLVVGGGTIATRRIKGFLQEGAAITVVAPT   63 (223)
T ss_dssp             CEEEECCSHHHHHHHHHHGGGCCCEEEECSS
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEECCC
Confidence            59999999999999999998 9999999864

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=84.05  E-value=0.48  Score=45.10  Aligned_cols=31  Identities=23%  Similarity=0.356  Sum_probs=28.6

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .+.|||+|..|+..|..|++ |.+|.++.|..
T Consensus         4 kI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~   35 (294)
T 3g17_A            4 SVAIIGPGAVGTTIAYELQQSLPHTTLIGRHA   35 (294)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHCTTCEEEESSC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEEEecc
Confidence            48999999999999999998 89999999874

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=83.89  E-value=0.59  Score=39.02  Aligned_cols=31  Identities=23%  Similarity=0.370  Sum_probs=27.8

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      -+.|||+|..|..+|..|.+ |.+|.+.++..
T Consensus        23 ~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~   54 (144)
T 3oj0_A           23 KILLVGNGMLASEIAPYFSYPQYKVTVAGRNI   54 (144)
T ss_dssp             EEEEECCSHHHHHHGGGCCTTTCEEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCEEEEEcCCH
Confidence            49999999999999999988 88899998864

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=83.86  E-value=0.45  Score=44.66  Aligned_cols=30  Identities=23%  Similarity=0.390  Sum_probs=27.9

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERG   84 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G   84 (523)
                      -|+|||+|-.|...|..|.+ |++|+|++..
T Consensus        15 ~VLVVGgG~va~rka~~Ll~~Ga~VtViap~   45 (274)
T 1kyq_A           15 RILLIGGGEVGLTRLYKLMPTGCKLTLVSPD   45 (274)
T ss_dssp             EEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             EEEEECCcHHHHHHHHHHHhCCCEEEEEcCC
Confidence            49999999999999999999 9999999875

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=83.76  E-value=0.63  Score=44.42  Aligned_cols=31  Identities=29%  Similarity=0.537  Sum_probs=28.4

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      -|.|||+|..|..+|..|++ |++|+++++..
T Consensus        17 ~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~   48 (302)
T 1f0y_A           17 HVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE   48 (302)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            39999999999999999998 89999999864

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=83.58  E-value=0.57  Score=44.27  Aligned_cols=31  Identities=23%  Similarity=0.314  Sum_probs=28.4

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      -|.|||+|..|..+|..|++ |++|++.++..
T Consensus         6 kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~   37 (283)
T 4e12_A            6 NVTVLGTGVLGSQIAFQTAFHGFAVTAYDINT   37 (283)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            38999999999999999998 99999999864

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=83.52  E-value=0.62  Score=40.64  Aligned_cols=31  Identities=19%  Similarity=0.185  Sum_probs=28.0

Q ss_pred             cEEEECCCCchHHHHhhhhc--cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD--NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae--g~~VlvlE~G~   85 (523)
                      .++|||.|..|..+|..|.+  |.+|+++|+..
T Consensus        41 ~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~   73 (183)
T 3c85_A           41 QVLILGMGRIGTGAYDELRARYGKISLGIEIRE   73 (183)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHCSCEEEEESCH
T ss_pred             cEEEECCCHHHHHHHHHHHhccCCeEEEEECCH
Confidence            59999999999999999975  79999999864

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=83.27  E-value=0.62  Score=43.16  Aligned_cols=32  Identities=22%  Similarity=0.358  Sum_probs=28.8

Q ss_pred             ccEEEECCCCchHHHHhhhhc-c-CeeEEEecCC
Q 009873           54 FDYIVVGGGTTGCPLAATLSD-N-FSVLLVERGG   85 (523)
Q Consensus        54 ~DvIIVGsG~aG~~~A~~Lae-g-~~VlvlE~G~   85 (523)
                      ..|+|||+|..|+.+|..|+. | .++.|+++..
T Consensus        32 ~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           32 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   65 (249)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence            469999999999999999999 8 4899999875

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=82.72  E-value=0.6  Score=45.33  Aligned_cols=30  Identities=30%  Similarity=0.452  Sum_probs=27.9

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERG   84 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G   84 (523)
                      -+.|||+|..|+..|..|++ |.+|.++.+.
T Consensus         5 kI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~   35 (335)
T 3ghy_A            5 RICIVGAGAVGGYLGARLALAGEAINVLARG   35 (335)
T ss_dssp             CEEEESCCHHHHHHHHHHHHTTCCEEEECCH
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCEEEEEECh
Confidence            48999999999999999999 8999999985

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=82.64  E-value=0.75  Score=43.95  Aligned_cols=31  Identities=26%  Similarity=0.440  Sum_probs=29.1

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .++|||+|..|+-+|..|++ +.+|.++++.+
T Consensus       157 ~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~~  188 (319)
T 3cty_A          157 RVVTIGGGNSGAIAAISMSEYVKNVTIIEYMP  188 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTBSEEEEECSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhhCCcEEEEEcCC
Confidence            59999999999999999999 89999999976

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=82.48  E-value=0.73  Score=43.40  Aligned_cols=30  Identities=23%  Similarity=0.141  Sum_probs=28.0

Q ss_pred             EEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           56 YIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        56 vIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      +.|||+|..|...|..|++ |++|.++++..
T Consensus         3 i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~   33 (291)
T 1ks9_A            3 ITVLGCGALGQLWLTALCKQGHEVQGWLRVP   33 (291)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             EEEECcCHHHHHHHHHHHhCCCCEEEEEcCc
Confidence            7899999999999999998 89999999875

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=82.26  E-value=0.84  Score=46.34  Aligned_cols=48  Identities=8%  Similarity=0.136  Sum_probs=38.2

Q ss_pred             hhCCCCCeEEEeccEEEEEEEc--CCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCc
Q 009873          227 EAGNPKNLVVLLNATVNNIIFS--NNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGAL  297 (523)
Q Consensus       227 ~~~~~~g~~i~~~~~V~~l~~~--~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~  297 (523)
                      ..+++.|++|++++.|++|..+  ++      ++++|..   +|+     ++.+         +.||+|+|.+
T Consensus       250 ~~~~~~G~~i~~~~~V~~i~~~~~~~------~~~~V~~---~g~-----~~~a---------d~VV~a~~~~  299 (453)
T 2bcg_G          250 RLSAIYGGTYMLDTPIDEVLYKKDTG------KFEGVKT---KLG-----TFKA---------PLVIADPTYF  299 (453)
T ss_dssp             HHHHHTTCEEECSCCCCEEEEETTTT------EEEEEEE---TTE-----EEEC---------SCEEECGGGC
T ss_pred             HHHHHcCCEEECCCEEEEEEEECCCC------eEEEEEE---CCe-----EEEC---------CEEEECCCcc
Confidence            3556679999999999999988  55      8888875   344     3666         9999999986

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=82.24  E-value=0.77  Score=44.04  Aligned_cols=54  Identities=7%  Similarity=0.145  Sum_probs=41.3

Q ss_pred             CCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEec-CCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHH
Q 009873          231 PKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKS-DGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQL  302 (523)
Q Consensus       231 ~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~-~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~l  302 (523)
                      ..|+++++++.|++|..+++      ++.+|++.+. +|+   ..++.+         +.||+|+|...++.+
T Consensus       221 ~~gv~i~~~~~v~~i~~~~~------~~~~v~~~~~~~g~---~~~i~~---------D~vi~a~G~~p~~~~  275 (338)
T 3itj_A          221 NEKIEILYNTVALEAKGDGK------LLNALRIKNTKKNE---ETDLPV---------SGLFYAIGHTPATKI  275 (338)
T ss_dssp             CTTEEEECSEEEEEEEESSS------SEEEEEEEETTTTE---EEEEEC---------SEEEECSCEEECCGG
T ss_pred             cCCeEEeecceeEEEEcccC------cEEEEEEEECCCCc---eEEEEe---------CEEEEEeCCCCChhH
Confidence            35789999999999988765      7889998873 344   456776         999999997544443

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=82.14  E-value=0.81  Score=41.05  Aligned_cols=32  Identities=13%  Similarity=0.248  Sum_probs=28.9

Q ss_pred             ccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           54 FDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        54 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      -.+.|||+|..|...|..|++ |.+|.++++..
T Consensus        20 ~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~   52 (209)
T 2raf_A           20 MEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKD   52 (209)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            359999999999999999998 89999998865

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=81.90  E-value=0.77  Score=45.93  Aligned_cols=34  Identities=32%  Similarity=0.414  Sum_probs=30.6

Q ss_pred             ccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCC
Q 009873           54 FDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSP   87 (523)
Q Consensus        54 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~   87 (523)
                      -.++|||+|..|+-+|..|++ |.+|.++|+.+..
T Consensus       153 ~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~  187 (415)
T 3lxd_A          153 KNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRV  187 (415)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCch
Confidence            359999999999999999998 9999999998743

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=81.68  E-value=0.76  Score=45.84  Aligned_cols=33  Identities=30%  Similarity=0.365  Sum_probs=30.1

Q ss_pred             ccEEEECCCCchHHHHhhhhc-cCeeEEEecCCC
Q 009873           54 FDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGS   86 (523)
Q Consensus        54 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~   86 (523)
                      -.++|||+|..|+-+|..|++ |.+|.++|+.+.
T Consensus       143 ~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~  176 (404)
T 3fg2_P          143 KHVVVIGAGFIGLEFAATARAKGLEVDVVELAPR  176 (404)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCc
Confidence            359999999999999999998 999999999873

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=81.28  E-value=1.1  Score=43.47  Aligned_cols=33  Identities=24%  Similarity=0.528  Sum_probs=29.4

Q ss_pred             cccEEEECCCCchHHHHhhhhc-c-CeeEEEecCC
Q 009873           53 SFDYIVVGGGTTGCPLAATLSD-N-FSVLLVERGG   85 (523)
Q Consensus        53 ~~DvIIVGsG~aG~~~A~~Lae-g-~~VlvlE~G~   85 (523)
                      ..-|+|||+|..|+.+|..|+. | .++.|++...
T Consensus        34 ~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~   68 (340)
T 3rui_A           34 NTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGT   68 (340)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCE
Confidence            3459999999999999999999 8 6899999875

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=81.23  E-value=0.82  Score=43.94  Aligned_cols=31  Identities=23%  Similarity=0.443  Sum_probs=28.1

Q ss_pred             cEEEECCCCchHHHHhhhhc-cC--eeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NF--SVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~--~VlvlE~G~   85 (523)
                      -|.|||+|..|..+|..|++ |+  +|.++++..
T Consensus         9 kI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~   42 (319)
T 1lld_A            9 KLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   42 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            49999999999999999998 77  999999864

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=81.12  E-value=1.2  Score=41.68  Aligned_cols=31  Identities=16%  Similarity=0.081  Sum_probs=28.6

Q ss_pred             ccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           54 FDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        54 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      -.++|||+|..|+-+|..|++ | +|.+++++.
T Consensus       142 ~~v~vvG~G~~~~e~a~~l~~~g-~v~~v~~~~  173 (297)
T 3fbs_A          142 GKIGVIAASPMAIHHALMLPDWG-ETTFFTNGI  173 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHGGGTS-EEEEECTTT
T ss_pred             CEEEEEecCccHHHHHHHhhhcC-cEEEEECCC
Confidence            369999999999999999999 8 999999885

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=80.43  E-value=0.86  Score=43.46  Aligned_cols=31  Identities=23%  Similarity=0.379  Sum_probs=28.1

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      -+.|||+|..|...|..|++ |++|.++++..
T Consensus         5 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~   36 (316)
T 2ew2_A            5 KIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWP   36 (316)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            48999999999999999998 89999998753

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=80.27  E-value=1.3  Score=41.10  Aligned_cols=33  Identities=21%  Similarity=0.374  Sum_probs=28.9

Q ss_pred             cccEEEECCCCchHHHHhhhhc-c-CeeEEEecCC
Q 009873           53 SFDYIVVGGGTTGCPLAATLSD-N-FSVLLVERGG   85 (523)
Q Consensus        53 ~~DvIIVGsG~aG~~~A~~Lae-g-~~VlvlE~G~   85 (523)
                      ..-|+|||+|..|+.+|..|+. | .++.|++...
T Consensus        28 ~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~   62 (251)
T 1zud_1           28 DSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDD   62 (251)
T ss_dssp             TCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCB
T ss_pred             cCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            3469999999999999999999 8 5899998764

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=80.13  E-value=0.95  Score=44.54  Aligned_cols=32  Identities=28%  Similarity=0.505  Sum_probs=28.8

Q ss_pred             ccEEEECCCCchHHHHhhhhc-cC-eeEEEecCC
Q 009873           54 FDYIVVGGGTTGCPLAATLSD-NF-SVLLVERGG   85 (523)
Q Consensus        54 ~DvIIVGsG~aG~~~A~~Lae-g~-~VlvlE~G~   85 (523)
                      .-|||+|+|.+|..+|.-|.. |. +|.++|+..
T Consensus       189 ~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~G  222 (398)
T 2a9f_A          189 VSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFG  222 (398)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred             cEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            459999999999999999888 86 999999975

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=80.09  E-value=0.87  Score=45.61  Aligned_cols=31  Identities=16%  Similarity=0.239  Sum_probs=29.0

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .|||||.|-.|..+|..|.+ |.+|++||+.+
T Consensus         6 ~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~   37 (413)
T 3l9w_A            6 RVIIAGFGRFGQITGRLLLSSGVKMVVLDHDP   37 (413)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEECCH
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Confidence            59999999999999999988 99999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	523
d1ju2a1	351	c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {	1e-54
d1ju2a1	351	c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {	6e-09
d1cf3a1	385	c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Asper	1e-43
d1cf3a1	385	c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Asper	6e-07
d1gpea1	391	c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penic	1e-35
d1gpea1	391	c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penic	8e-06
d1kdga1	360	c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain	2e-29
d1kdga1	360	c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain	2e-06
d2f5va1	379	c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {W	5e-24
d2f5va1	379	c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {W	3e-08
d3coxa1	370	c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of	3e-23
d1n4wa1	367	c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of	4e-20
d1ju2a2	170	d.16.1.1 (A:294-463) Hydroxynitrile lyase {Almond	3e-17
d1cf3a2	196	d.16.1.1 (A:325-520) Glucose oxidase {Aspergillus	2e-09
d1gpea2	196	d.16.1.1 (A:329-524) Glucose oxidase {Penicillium	2e-08
d1kdga2	181	d.16.1.1 (A:513-693) Flavoprotein domain of flavoc	1e-05
d1d5ta1	336	c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di	1e-04
d1chua2	305	c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {E	1e-04
d1ryia1	276	c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {	2e-04
d1y0pa2	308	c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (	2e-04
d2bcgg1	297	c.3.1.3 (G:5-301) Guanine nucleotide dissociation	2e-04
d1d4ca2	322	c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (	2e-04
d1qo8a2	317	c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (	3e-04
d2gf3a1	281	c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bac	4e-04
d2i0za1	251	c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {B	5e-04
d1i8ta1	298	c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mu	9e-04
d1v59a1	233	c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehyd	0.001
d2gqfa1	253	c.3.1.8 (A:1-194,A:343-401) Hypothetical protein H	0.001
d1gesa1	217	c.3.1.5 (A:3-146,A:263-335) Glutathione reductase	0.002
d2bs2a2	336	c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wo	0.003
d1mo9a1	261	c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketop	0.004

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} Length = 351

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

 Score =  185 bits (470), Expect = 1e-54
 Identities = 127/287 (44%), Positives = 179/287 (62%), Gaps = 14/287 (4%)

Query: 52  KSFDYIVVGGGTTGCPLAATLSDNFSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEYTS 111
            S+DY++VGGGT+GCPLAATLS+ + VL++ERG  P   P V     F ++L Q D+  +
Sbjct: 25  GSYDYVIVGGGTSGCPLAATLSEKYKVLVLERGSLPTAYPNVLTADGFVYNLQQEDDGKT 84

Query: 112 VAQSFISTDGVQNHRGRVLGGSSAINGGFYSRAREDFVKKAG--WDEELVKKAYEWVESK 169
             + F+S DG+ N RGRVLGG+S IN G Y+RA       +G  WD +LV + YEWVE  
Sbjct: 85  PVERFVSEDGIDNVRGRVLGGTSIINAGVYARANTSIYSASGVDWDMDLVNQTYEWVEDT 144

Query: 170 VVFPPELTPWQSVVEFGLLEAGILPYNGYSLEHIEGTKIGGTAFDQCGKRHTSADLLEAG 229
           +V+ P    WQSV +   LEAG+ P +G+SL+H EGT+I G+ FD  G RH + +LL  G
Sbjct: 145 IVYKPNSQSWQSVTKTAFLEAGVHPNHGFSLDHEEGTRITGSTFDNKGTRHAADELLNKG 204

Query: 230 NPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGD 289
           N  NL V ++A+V  IIFSN        A G+ +  S+G+    H+A++       + G+
Sbjct: 205 NSNNLRVGVHASVEKIIFSNA---PGLTATGVIYRDSNGTP---HQAFVR------SKGE 252

Query: 290 VILSAGALGSPQLLLLSGIGPHDHLKDLNIPTIVDLQEVGEGMQDNP 336
           VI+SAG +G+PQLLLLSG+GP  +L  LNIP ++    VG+ +    
Sbjct: 253 VIVSAGTIGTPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQCLVGKV 299

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} Length = 351

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

 Score = 55.3 bits (132), Expect = 6e-09
 Identities = 25/49 (51%), Positives = 37/49 (75%)

Query: 470 VVDKDYRVYGVKGLRVIDGSTFQESPGTNPMATVMMLGRYQGVKLVEER 518
           V+D D+RV G+  LRV+DGSTF  +P ++P    +MLGRY G+K+++ER
Sbjct: 299 VLDGDFRVTGINALRVVDGSTFPYTPASHPQGFYLMLGRYVGIKILQER 347

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]} Length = 385

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

 Score =  156 bits (396), Expect = 1e-43
 Identities = 84/388 (21%), Positives = 136/388 (35%), Gaps = 57/388 (14%)

Query: 42  MTSDVKEVAGKSFDYIVVGGGTTGCPLAATLSDN--FSVLLVERGGSPFG-NPLVTDKRF 98
           + +D K+V+G++ DYI+ GGG TG   AA L++N   SVL++E G       P++ D   
Sbjct: 6   LLTDPKDVSGRTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNA 65

Query: 99  FGFSL------------LQTDEYTSVAQSFISTDGVQNHRGRVL---------------- 130
           +G               L T+  T++ +S     G     G                   
Sbjct: 66  YGDIFGSSVDHAYETVELATNNQTALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFG 125

Query: 131 -GGSSAINGGFYSRAREDFVKKAG--------WDEELVKKAYEWVESKVVFPPELTPWQS 181
             G +  N   YS   E               ++                   + +P   
Sbjct: 126 NEGWNWDNVAAYSLQAERARAPNAKQIAAGHYFNASCHGVNGTVHAGPRDTGDDYSPIVK 185

Query: 182 VVEFGLLEAGILPYNGYSLEHIEGTKIGGTAFDQCGKRHTSADLL--EAGNPKNLVVLLN 239
            +   + + G+     +      G  +      +   R  +A           NL VL  
Sbjct: 186 ALMSAVEDRGVPTKKDFGCGDPHGVSMFPNTLHEDQVRSDAAREWLLPNYQRPNLQVLTG 245

Query: 240 ATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGS 299
             V  ++ S NG     RA G+ F    G   + H  Y           +V+L+AG+  S
Sbjct: 246 QYVGKVLLSQNGTTP--RAVGVEFGTHKG---NTHNVYAKH--------EVLLAAGSAVS 292

Query: 300 PQLLLLSGIGPHDHLKDLNIPTIVDLQEVGEGMQDNPCIAKLVDTMPQKRLPEPPEVV-A 358
           P +L  SGIG    L+ L I T+VDL      M     +  +VD   +    +   V+  
Sbjct: 293 PTILEYSGIGMKSILEPLGIDTVVDLPVGLCSMMPKE-MGGVVDNAARVYGVQGLRVIDG 351

Query: 359 GVLPISSNASRMPIAAKLAFPISKGKLE 386
            + P   ++  M +   +A  IS   LE
Sbjct: 352 SIPPTQMSSHVMTVFYAMALKISDAILE 379

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]} Length = 385

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

 Score = 49.5 bits (117), Expect = 6e-07
 Identities = 18/41 (43%), Positives = 23/41 (56%)

Query: 467 VGSVVDKDYRVYGVKGLRVIDGSTFQESPGTNPMATVMMLG 507
           +G VVD   RVYGV+GLRVIDGS       ++ M     + 
Sbjct: 330 MGGVVDNAARVYGVQGLRVIDGSIPPTQMSSHVMTVFYAMA 370

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} Length = 391

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

 Score =  135 bits (339), Expect = 1e-35
 Identities = 70/337 (20%), Positives = 124/337 (36%), Gaps = 55/337 (16%)

Query: 42  MTSDVKEVAGKSFDYIVVGGGTTGCPLAATLSDN--FSVLLVERGGSPFGN-PLVTDKRF 98
           + SD  +VAGK++DYI+ GGG TG  +AA L++N    VL++E+G     +  ++ D   
Sbjct: 13  LLSDPSKVAGKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPNA 72

Query: 99  FGFSLLQTDEYTSVAQSFISTDGVQNHRGRVLGGSSAINGGFYSRAREDFVKKA------ 152
           +G     T +   +    I+        G+ LGGS+ ING  ++R  +  +         
Sbjct: 73  YGQIFGTTVDQNYLTVPLINNRTNNIKAGKGLGGSTLINGDSWTRPDKVQIDSWEKVFGM 132

Query: 153 -GWDEELVKKAYEWVE-----------------------------SKVVFPPELTPWQSV 182
            GW+ + + +  +  E                                      +P    
Sbjct: 133 EGWNWDNMFEYMKKAEAARTPTAAQLAAGHSFNATCHGTNGTVQSGARDNGQPWSPIMKA 192

Query: 183 VEFGLLEAGILPYNGYSLEHIEGTKIG--GTAFDQCGKRHTSADLLEAGNPKNLVVLLNA 240
           +   +   G+     +   H  G  +       +Q       A LL      NL +L   
Sbjct: 193 LMNTVSALGVPVQQDFLCGHPRGVSMIMNNLDENQVRVDAARAWLLPNYQRSNLEILTGQ 252

Query: 241 TVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSP 300
            V  ++F      +  +A G+ F  +   +  +               +V+L+AG+  SP
Sbjct: 253 MVGKVLFKQTA--SGPQAVGVNFGTNKAVNFDVFAK-----------HEVLLAAGSAISP 299

Query: 301 QLLLLSGIGPHDHLKDLNIPTIVDLQE-VGEGMQDNP 336
            +L  SGIG    L   N+  ++DL   +   M    
Sbjct: 300 LILEYSGIGLKSVLDQANVTQLLDLPVGICSMMSREL 336

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} Length = 391

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

 Score = 45.7 bits (107), Expect = 8e-06
 Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 4/75 (5%)

Query: 433 GIKPQEKLMSNSDELRKLCKNNVRTFYHYHGGCIVGSVVDKDYRVYGVKGLRVIDGSTFQ 492
           GI  +  L   +          + +         +G VVD   +VYG +GLRVIDGS   
Sbjct: 306 GIGLKSVLDQANVTQLLDLPVGICSMMSRE----LGGVVDATAKVYGTQGLRVIDGSIPP 361

Query: 493 ESPGTNPMATVMMLG 507
               ++ M     + 
Sbjct: 362 TQVSSHVMTIFYGMA 376

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 360

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

 Score =  116 bits (291), Expect = 2e-29
 Identities = 66/343 (19%), Positives = 110/343 (32%), Gaps = 39/343 (11%)

Query: 54  FDYIVVGGGTTGCPLAATLS-DNFSVLLVERGGSPFGNPLVTDKRFFGFSLLQTD----- 107
           +DYI+VG G  G   A  LS     VLL+ERGG        T    +  S   T      
Sbjct: 3   YDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDIPG 62

Query: 108 ---EYTSVAQSFISTDGVQNHRGRVLGGSSAINGGFYSRAR-----------EDFVKKAG 153
                 + +  F     +    G ++GG +++NG  Y                 +   A 
Sbjct: 63  LFESLFTDSNPFWWCKDITVFAGCLVGGGTSVNGALYWYPNDGDFSSSVGWPSSWTNHAP 122

Query: 154 WDEELVKKAYEWVESKVVFPPELTPWQSVVEFGLLEAG---ILPYNGYSLEHIEGTKIGG 210
           +  +L  +              L    +VV   L   G       +  + +         
Sbjct: 123 YTSKLSSRLPSTDHPSTDGQRYLEQSFNVVSQLLKGQGYNQATINDNPNYKDHVFGYSAF 182

Query: 211 TAFDQCGKRHTSADLLEAGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSS 270
              +       +  L  A    N     N  V+N++ + +      +  G++        
Sbjct: 183 DFLNGKRAGPVATYLQTALARPNFTFKTNVMVSNVVRNGS------QILGVQTNDPTLGP 236

Query: 271 NHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSGIGPHDHLKDLNI-PTIVDLQEVG 329
           N                  VILSAGA G+ ++L  SGIGP D ++ +   PT        
Sbjct: 237 NGFIPVTPKG--------RVILSAGAFGTSRILFQSGIGPTDMIQTVQSNPTAAAALPPQ 288

Query: 330 EGMQDNPCIAKLVDTMPQKRLPEPPEVVAGVLPIS-SNASRMP 371
               + P     + + PQ  + +    V G   +   +A  +P
Sbjct: 289 NQWINLPVGMTTIGSSPQSAVVDSNVKVFGTNNLFIVDAGIIP 331

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 360

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

 Score = 47.7 bits (112), Expect = 2e-06
 Identities = 18/84 (21%), Positives = 30/84 (35%), Gaps = 7/84 (8%)

Query: 433 GIKPQEKLMSNSDELRKLCKNNVRTFYHYH--GGCIVGS-----VVDKDYRVYGVKGLRV 485
           GI P + + +             +  +     G   +GS     VVD + +V+G   L +
Sbjct: 265 GIGPTDMIQTVQSNPTAAAALPPQNQWINLPVGMTTIGSSPQSAVVDSNVKVFGTNNLFI 324

Query: 486 IDGSTFQESPGTNPMATVMMLGRY 509
           +D       P  NP  T+M     
Sbjct: 325 VDAGIIPHLPTGNPQGTLMSAAEQ 348

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} Length = 379

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

 Score =  101 bits (252), Expect = 5e-24
 Identities = 37/322 (11%), Positives = 75/322 (23%), Gaps = 63/322 (19%)

Query: 52  KSFDYIVVGGGTTGCPLAATLSDN-FSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEYT 110
             +D ++VG G  GC  A  L    + V + + G    G  +   K+         D++ 
Sbjct: 3   IKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDSGLKIGAHKKNTVEYQKNIDKFV 62

Query: 111 SVAQSFISTDGVQ--NHRGRVLGGSSAINGGFYSRAR-----EDFVKKAGWDEELVKKAY 163
           +V Q  + +  V         L  +S     F+ R       +     +G     V    
Sbjct: 63  NVIQGQLMSVSVPVNTLVVDTLSPTSWQASTFFVRNGSNPEQDPLRNLSGQAVTRVVGGM 122

Query: 164 EWVESKVVFP-------------------------PELTPWQSVVEFGLLEAGI------ 192
               +                               +   +         E+        
Sbjct: 123 STHWTCATPRFDREQRPLLVKDDADADDAEWDRLYTKAESYFQTGTDQFKESIRHNLVLN 182

Query: 193 ---------LPYNGYSLEHIEGTKIGGTAFDQCGKRHTSADLLEAGNPKNLVVLLNATVN 243
                      +    L     +                         +   +       
Sbjct: 183 KLAEEYKGQRDFQQIPLAATRRSPTFVEWSSANTVFDLQNRPNTDAPEERFNLFPAVACE 242

Query: 244 NIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLL 303
            ++ +            +             +A +            +L+AGA+ + QLL
Sbjct: 243 RVVRNALNS----EIESLHIHDLISGDRFEIKADV-----------YVLTAGAVHNTQLL 287

Query: 304 LLSGIGPHDHLKDLNIPTIVDL 325
           + SG G        N P ++  
Sbjct: 288 VNSGFGQLGRPNPTNPPELLPS 309

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} Length = 379

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

 Score = 53.4 bits (127), Expect = 3e-08
 Identities = 19/89 (21%), Positives = 29/89 (32%), Gaps = 7/89 (7%)

Query: 436 PQEKLMSNSDELRKLCKNNVRTFYHYHGGCIVG-------SVVDKDYRVYGVKGLRVIDG 488
            Q  + S   +L +    N        G   +G         V+ D RV+G K L +   
Sbjct: 284 TQLLVNSGFGQLGRPNPTNPPELLPSLGSHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGC 343

Query: 489 STFQESPGTNPMATVMMLGRYQGVKLVEE 517
                + G NP  T M L       + + 
Sbjct: 344 GNIPTAYGANPTLTAMSLAIKSCEYIKQN 372

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

 Score = 99.2 bits (246), Expect = 3e-23
 Identities = 53/336 (15%), Positives = 97/336 (28%), Gaps = 72/336 (21%)

Query: 51  GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGS---------PFGNPLVTDKRFF- 99
           G     +V+G G  G   A  L+       +VE G S          F   L  DKR   
Sbjct: 5   GDRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGRSWDTPGSDGKIFCGMLNPDKRSMW 64

Query: 100 -------------GFSLLQTDEYTSVAQSFISTDGVQNHRGRVLGGSSAINGGFYSRARE 146
                        GF + ++ +            G++ ++GR +GG S +NGG     + 
Sbjct: 65  LADKTDQPVSNFMGFGINKSIDRYVGVLDSERFSGIKVYQGRGVGGGSLVNGGMAVTPKR 124

Query: 147 ---DFVKKAGWDEELVKKAYEWVES---------KVVFPPELTPWQSVVEFGLLEAGI-- 192
              + +  +    E+  K +    +               E   +          +G   
Sbjct: 125 NYFEEILPSVDSNEMYNKYFPRANTGLGVNNIDQAWFESTEWYKFARTGRKTAQRSGFTT 184

Query: 193 ------LPYNGYSLEHIEGTKIGGTAFDQCGKRHTSA------DLLEAGNPKNLVVLLNA 240
                   +     E        G   +     +          L +A     L +    
Sbjct: 185 AFVPNVYDFEYMKKEAAGQVTKSGLGGEVIYGNNAGKKSLDKTYLAQAAATGKLTITTLH 244

Query: 241 TVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSP 300
            V  +  +          + +   + D   N +    +       T   V  +AG++G+ 
Sbjct: 245 RVTKVAPATG------SGYSVTMEQIDEQGNVVATKVV-------TADRVFFAAGSVGTS 291

Query: 301 QLLLLSGIGPHDHLKDLNIPTIVDLQEVGEGMQDNP 336
           +LL+        HL +L+        +VGEG     
Sbjct: 292 KLLVSM--KAQGHLPNLS-------SQVGEGWGVLL 318

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} Length = 367

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

 Score = 90.0 bits (222), Expect = 4e-20
 Identities = 54/336 (16%), Positives = 96/336 (28%), Gaps = 73/336 (21%)

Query: 55  DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG---------SPFGNPLVTDKR------- 97
             +V+G G      A  L +     L++E G          + F   L  DKR       
Sbjct: 4   PAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLWNQPGPDGNIFCGMLNPDKRSSWFKNR 63

Query: 98  --------FFGFSLLQTDEYTSVAQSFISTDGVQNHRGRVLGGSSAINGGFYSRARE--- 146
                    +   + +  +  +     ++ D +  + GR +GG S +NGG     +    
Sbjct: 64  TEAPLGSFLWLDVVNRNIDPYAGVLDRVNYDQMSVYVGRGVGGGSLVNGGMAVEPKRSYF 123

Query: 147 DFVKKAGWDEELVKKAYEWVESK---------VVFPPELTPWQSVVEFGLLEAGILP--- 194
           + +       E+  + +    S               E   +  V      +AG+     
Sbjct: 124 EEILPRVDSSEMYDRYFPRANSMLRVNHIDTKWFEDTEWYKFARVSREQAGKAGLGTVFV 183

Query: 195 -----YNGYSLEHIEGTKIGGTA----FDQCGKRHTSADLL--EAGNPKNLVVLLNATVN 243
                +     E          A    +     + +        A     + +     V 
Sbjct: 184 PNVYDFGYMQREAAGEVPKSALATEVIYGNNHGKQSLDKTYLAAALGTGKVTIQTLHQVK 243

Query: 244 NIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLL 303
            I  + +G      A  +    +DG      E              + L AG+LGS +LL
Sbjct: 244 TIRQTKDGG----YALTVEQKDTDGKLLATKEISCRY---------LFLGAGSLGSTELL 290

Query: 304 LLSGIGPHDHLKDLNIPTIVDLQEVGEGMQDNPCIA 339
           + +       L +LN        EVG G       A
Sbjct: 291 VRARD--TGTLPNLN-------SEVGAGWGCVLGKA 317

>d1ju2a2 d.16.1.1 (A:294-463) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} Length = 170

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GMC oxidoreductases
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

 Score = 77.1 bits (189), Expect = 3e-17
 Identities = 30/120 (25%), Positives = 59/120 (49%), Gaps = 14/120 (11%)

Query: 358 AGVLPISSNASRMPIAAKLAFPISKGKLEL-DSTDPRQNPSIKFNYLAKEKDLHECVKMV 416
           +   P+  N++    A+K+A P+S G L L  S++ R +P++KFNY +   DL  CV  +
Sbjct: 52  SSSYPLP-NSTFAHFASKVAGPLSYGSLTLKSSSNVRVSPNVKFNYYSNLTDLSHCVSGM 110

Query: 417 QLLDKVTKSQSVSSFLG------------IKPQEKLMSNSDELRKLCKNNVRTFYHYHGG 464
           + + ++  + ++  +                P  K  ++       C+ +V +++HYHGG
Sbjct: 111 KKIGELLSTDALKPYKVEDLPGVEGFNILGIPLPKDQTDDAAFETFCRESVASYWHYHGG 170

>d1cf3a2 d.16.1.1 (A:325-520) Glucose oxidase {Aspergillus niger [TaxId: 5061]} Length = 196

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GMC oxidoreductases
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

 Score = 55.1 bits (132), Expect = 2e-09
 Identities = 19/120 (15%), Positives = 39/120 (32%), Gaps = 6/120 (5%)

Query: 346 PQKRLPEPPEVVAGVLPISSNASRMPIAAKLAFPISKGKLELDSTDPR-QNPSIKFNYLA 404
             +       V    L + + A           P ++G + +   DP   + +    Y  
Sbjct: 74  NYRDWIVNHNVAYSELFLDT-AGVASFDVWDLLPFTRGYVHILDKDPYLHHFAYDPQYFL 132

Query: 405 KEKDLHECVKMVQLLDKVTKSQSVSSFLG--IKPQEKLMSNS--DELRKLCKNNVRTFYH 460
            E DL       QL   ++ S ++ ++      P + L  ++      +    + R  YH
Sbjct: 133 NELDLLGQAAATQLARNISNSGAMQTYFAGETIPGDNLAYDADLSAWTEYIPYHFRPNYH 192

>d1gpea2 d.16.1.1 (A:329-524) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} Length = 196

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GMC oxidoreductases
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

 Score = 52.5 bits (125), Expect = 2e-08
 Identities = 16/101 (15%), Positives = 33/101 (32%), Gaps = 5/101 (4%)

Query: 365 SNASRMPIAAKLAFPISKGKLELDSTDPRQNPS-IKFNYLAKEKDLHECVKMVQLLDKVT 423
               ++        P ++G + + S+DP          +   E DL       +L   +T
Sbjct: 92  DTEGKINFDLWDLIPFTRGSVHILSSDPYLWQFANDPKFFLNEFDLLGQAAASKLARDLT 151

Query: 424 KSQSVSSFLG--IKPQEKLMSNS--DELRKLCKNNVRTFYH 460
              ++  +      P   L+ N+   +       N R  +H
Sbjct: 152 SQGAMKEYFAGETLPGYNLVQNATLSQWSDYVLQNFRPNWH 192

>d1kdga2 d.16.1.1 (A:513-693) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), substrate-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 181

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GMC oxidoreductases
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), substrate-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

 Score = 44.0 bits (103), Expect = 1e-05
 Identities = 12/105 (11%), Positives = 30/105 (28%), Gaps = 6/105 (5%)

Query: 359 GVLPISSNASRMPIAAKLAFPISKGKLELDSTDPRQNPSIKFNYLAKEKDLHECVKMVQL 418
             LP +++              S+G++ +D+    +   +   +L    D    ++ +  
Sbjct: 82  SSLPYNASQIFTITVYLSTGIQSRGRIGIDA--ALRGTVLTPPWLVNPVDKTVLLQALHD 139

Query: 419 LDKVTKSQSVSSFLGIKPQEKLMSNSDELRKLCKNNVRTFYHYHG 463
           +     S    +   I P        +E             H+  
Sbjct: 140 VVSNIGSIPGLTM--ITPDVTQ--TLEEYVDAYDPATMNSNHWVS 180

>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.1 bits (97), Expect = 1e-04
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 52 KSFDYIVVGGGTTGCPLAATLS-DNFSVLLVERGGSPFG 89
          + +D IV+G G T C L+  +S +   VL ++R     G
Sbjct: 5  EEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGG 43

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]} Length = 305

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

 Score = 41.8 bits (97), Expect = 1e-04
 Identities = 12/39 (30%), Positives = 21/39 (53%)

Query: 52 KSFDYIVVGGGTTGCPLAATLSDNFSVLLVERGGSPFGN 90
           S D +++G G  G  LA  L+D   V+++ +G    G+
Sbjct: 6  HSCDVLIIGSGAAGLSLALRLADQHQVIVLSKGPVTEGS 44

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} Length = 276

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

 Score = 41.3 bits (95), Expect = 2e-04
 Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 52 KSFDYIVVGGGTTGCPLAATLS-DNFSVLLVERGGSPFGN 90
          + ++ +V+GGG  G  +A  L+ +N +  L E G      
Sbjct: 3  RHYEAVVIGGGIIGSAIAYYLAKENKNTALFESGTMGGRT 42

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 308

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 41.2 bits (95), Expect = 2e-04
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 54 FDYIVVGGGTTGCPLAATLSDN-FSVLLVERGGSPFGN 90
           D +VVG G  G   A + +D+   V+L+E+     GN
Sbjct: 17 VDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGN 54

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.0 bits (94), Expect = 2e-04
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 52 KSFDYIVVGGGTTGCPLAATLSDN-FSVLLVERGGSPFG 89
            +D IV+G G T C L+  LS +   VL +++     G
Sbjct: 4  TDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGG 42

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} Length = 322

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

 Score = 40.7 bits (94), Expect = 2e-04
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 52 KSFDYIVVGGGTTGCPLAATLSDN-FSVLLVERGGSPFGN 90
          ++ D +++G G  G   A +  D    V+L+E+   P GN
Sbjct: 22 ETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGN 61

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 317

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 40.7 bits (94), Expect = 3e-04
 Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 52 KSFDYIVVGGGTTGCPLAATLSDN-FSVLLVERGGSPFGN 90
          ++   +VVG G+ G   +        +V+LV++     GN
Sbjct: 18 ETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGN 57

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} Length = 281

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

 Score = 40.1 bits (92), Expect = 4e-04
 Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 1/37 (2%)

Query: 54 FDYIVVGGGTTGCPLAATLS-DNFSVLLVERGGSPFG 89
          FD IVVG G+ G      L+      LLV+    P  
Sbjct: 4  FDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHT 40

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} Length = 251

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

 Score = 39.6 bits (91), Expect = 5e-04
 Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 54 FDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPFGNPLVT 94
          +D IV+GGG +G   A   ++   +VLL+++G        ++
Sbjct: 3  YDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAIS 44

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 298

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 39.0 bits (90), Expect = 9e-04
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 3/49 (6%)

Query: 54  FDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPFGNPLVTDKRFFGF 101
           +DYI+VG G  G   A  L   N  VL++E+     GN     +   G 
Sbjct: 2   YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGN--AYTEDCEGI 48

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.3 bits (88), Expect = 0.001
 Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 1/49 (2%)

Query: 52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPFGNPLVTDKRFF 99
          KS D +++GGG  G   A   +   F+   VE+ G   G  L       
Sbjct: 4  KSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNVGCIPS 52

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} Length = 253

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

 Score = 37.9 bits (87), Expect = 0.001
 Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 1/44 (2%)

Query: 52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPFGNPLVT 94
          +  + I++G G  G   AA L+    SV + + G       L++
Sbjct: 3  QYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMS 46

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 217

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

 Score = 37.6 bits (86), Expect = 0.002
 Identities = 24/193 (12%), Positives = 51/193 (26%), Gaps = 17/193 (8%)

Query: 52  KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEYT 110
           K +DYI +GGG+ G       +       L+E      G   V         +    +  
Sbjct: 1   KHYDYIAIGGGSGGIASINRAAMYGQKCALIEAK--ELGGTCVNVGCVPKKVMWHAAQIR 58

Query: 111 SVAQSFISTDGVQNHRGRVLGGSSAINGGFYSRAREDFVKKAGWD-EELVKKAYEWVESK 169
                +    G            +  N      +R  ++ +     E ++ K    V   
Sbjct: 59  EAIHMYGPDYGFDT-------TINKFNWETLIASRTAYIDRIHTSYENVLGKNNVDVIKG 111

Query: 170 VVFPPELTPWQS-----VVEFGLLEAGILPYNGYSLEHIEGTKIGGTAFDQCGKRHTSAD 224
                +    +        +  L+  G  P +       +   +         K +   D
Sbjct: 112 FARFVDAKTLEVNGETITADHILIATGGRPSHP-REPANDNINLEAAGVKTNEKGYIVVD 170

Query: 225 LLEAGNPKNLVVL 237
             +  N + +  +
Sbjct: 171 KYQNTNIEGIYAV 183

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

 Score = 37.8 bits (86), Expect = 0.003
 Identities = 8/40 (20%), Positives = 15/40 (37%), Gaps = 1/40 (2%)

Query: 52 KSFDYIVVGGGTTGCPLAATLSDN-FSVLLVERGGSPFGN 90
          +  D +V+GGG  G   A        S +++        +
Sbjct: 4  QYCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVKRSH 43

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 261

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

 Score = 36.9 bits (84), Expect = 0.004
 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 5/53 (9%)

Query: 34 KGKEVPYYMTSDVKEVAGKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG 85
           G EV Y +  +      + +D I +GGG  G   +A L       L+V+R  
Sbjct: 27 DGGEVIYNVDENDP----REYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWP 75

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	523
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	100.0
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	100.0
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	100.0
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	100.0
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	100.0
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	100.0
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	100.0
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	99.78
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	99.75
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	99.74
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	99.61
d1ju2a2	170	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	99.58
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	99.58
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	99.54
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	99.52
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	99.48
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	99.47
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	99.45
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	99.43
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	99.43
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	99.37
d1cf3a2	196	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	99.33
d1gpea2	196	Glucose oxidase {Penicillium amagasakiense [TaxId:	99.32
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	99.22
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	99.19
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	99.04
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	98.98
d1kdga2	181	Flavoprotein domain of flavocytochrome cellobiose	98.92
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	98.87
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	98.77
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	98.59
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.46
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.45
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.44
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	98.42
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	98.39
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	98.36
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	98.34
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.34
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	98.26
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.26
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	98.25
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	98.24
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	98.22
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	98.22
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	98.21
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	98.21
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.2
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.19
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	98.14
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	98.11
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	98.04
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.04
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	98.03
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	98.01
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.01
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.0
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	98.0
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	97.96
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	97.95
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	97.93
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	97.93
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	97.93
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	97.92
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	97.9
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	97.88
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	97.87
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	97.86
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	97.83
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	97.77
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	97.73
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	97.73
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	97.69
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	97.67
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	97.59
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	97.57
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	97.56
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	97.54
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	97.42
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	97.36
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	97.32
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	97.12
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	97.06
d2f5va2	198	Pyranose 2-oxidase {White-rot fungus (Peniophora s	96.82
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	96.71
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	96.61
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	96.5
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	96.48
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	96.46
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	96.22
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	96.05
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	95.95
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	95.82
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	95.76
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	95.66
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	95.49
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	95.28
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	95.08
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	94.11
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	93.92
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	93.84
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	93.7
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	93.1
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	92.58
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	91.81
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	90.61
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	90.57
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	90.02
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	89.88
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	89.62
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	89.36
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	89.33
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	89.29
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	88.57
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	88.13
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	87.91
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	87.74
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	86.52
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	86.05
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	85.25
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	84.76
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	83.97
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	83.94
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	83.36
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	82.86
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	81.93
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	81.88
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	81.76
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	81.35
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	80.25

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=100.00  E-value=3e-49  Score=401.21  Aligned_cols=335  Identities=26%  Similarity=0.390  Sum_probs=256.5

Q ss_pred             cccccccccccCCcccEEEECCCCchHHHHhhhhc-c-CeeEEEecCCCCCCCCC-ccccchhccccCCC--CCCccccc
Q 009873           40 YYMTSDVKEVAGKSFDYIVVGGGTTGCPLAATLSD-N-FSVLLVERGGSPFGNPL-VTDKRFFGFSLLQT--DEYTSVAQ  114 (523)
Q Consensus        40 ~~~~~~~~~~~~~~~DvIIVGsG~aG~~~A~~Lae-g-~~VlvlE~G~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~  114 (523)
                      +....++++...++|||||||||++|+++|.||+| + .+|||||+|+....+.. ...+..+...+...  ..|.+.++
T Consensus        11 ~~~~~~p~~~~~~tyD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~~~~~~~~~~~~p~~~~~~~~~~~dw~~~t~p~   90 (391)
T d1gpea1          11 SSLLSDPSKVAGKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPNAYGQIFGTTVDQNYLTVPL   90 (391)
T ss_dssp             GGSBCCGGGTTTCEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCCTTSCHHHHCGGGTTTTTTSTTBCCEECCCC
T ss_pred             ccccCCcccccCCeeeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCCCCCCCCceeeCHHHHHHhhCCCcccCceeeec
Confidence            44455666677789999999999999999999999 5 79999999985433322 22333333332221  23444443


Q ss_pred             cCcCCCceeecCceecccccccCCccccCCChhhHhh-------CCCCHHHHHHHhHhhhccccC---------------
Q 009873          115 SFISTDGVQNHRGRVLGGSSAINGGFYSRAREDFVKK-------AGWDEELVKKAYEWVESKVVF---------------  172 (523)
Q Consensus       115 ~~~~~~~~~~~~g~~lGG~s~~~~~~~~r~~~~~~~~-------~~w~~~~~~~~~~~~~~~~~~---------------  172 (523)
                        ..++.+.+.+|+++||+|.+|++++.|+.+.+++.       .+|.++++.+||++.|+....               
T Consensus        91 --~~~r~~~~~~G~~lGGsS~in~~~~~rg~~~d~~~w~~~~G~~gW~~~~l~pyf~k~E~~~~~~~~~~~~~~~~~~~~  168 (391)
T d1gpea1          91 --INNRTNNIKAGKGLGGSTLINGDSWTRPDKVQIDSWEKVFGMEGWNWDNMFEYMKKAEAARTPTAAQLAAGHSFNATC  168 (391)
T ss_dssp             --TTSCCCEECCBCSTTGGGGTSCCEECCCCHHHHHHHHHTTCCTTCSHHHHHHHHHHTEEECCCCHHHHHHTCCCCGGG
T ss_pred             --CCCcEeeeceeeccCcccceeeeEEeeccccccccccccCCCCccccchhHHHHHHhhhccCCcchhcccccCccccc
Confidence              45677888999999999999999999998766642       469999999999999875421               


Q ss_pred             --------------CCCCChhHHHHHHHHHHcCCCCCCCCCcCCCCcceeeeeEEcCCCeeechHh-hh-hhCCCCCeEE
Q 009873          173 --------------PPELTPWQSVVEFGLLEAGILPYNGYSLEHIEGTKIGGTAFDQCGKRHTSAD-LL-EAGNPKNLVV  236 (523)
Q Consensus       173 --------------~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~l-~~~~~~g~~i  236 (523)
                                    .....+..+.+.++..+.|+............+.....+..+..+.|.+... ++ +...+.|++|
T Consensus       169 ~g~~~~~~~~~~~~~~~~~p~~~~~~~a~~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~r~s~a~~~~~p~~~r~nl~i  248 (391)
T d1gpea1         169 HGTNGTVQSGARDNGQPWSPIMKALMNTVSALGVPVQQDFLCGHPRGVSMIMNNLDENQVRVDAARAWLLPNYQRSNLEI  248 (391)
T ss_dssp             CCBSSSEEEBCCCCSSCBCTHHHHHHHHHHHTTCCBSCCTTSSCCCEEECCEESBCTTCCBCCHHHHHTTTTTTCTTEEE
T ss_pred             cCCCCcccccccccccccCHHHHHHHHHHHhcCCceeeccccCcccccccccceeeccccccchhhhccCccccchhhhh
Confidence                          0123456778888899999854332222222222222222234455555544 33 4777899999


Q ss_pred             EeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHhhCCCChhhhhh
Q 009873          237 LLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSGIGPHDHLKD  316 (523)
Q Consensus       237 ~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~SGig~~~~l~~  316 (523)
                      ++++.|+||+++++..  +.|++||++.+.+|.   .++++|        +++||||||+|+||+|||+||||++++|++
T Consensus       249 ~t~a~V~rIl~~~~~~--g~ra~GV~~~~~~g~---~~~v~A--------~keVILaAGai~SP~LLl~SGIGp~~~L~~  315 (391)
T d1gpea1         249 LTGQMVGKVLFKQTAS--GPQAVGVNFGTNKAV---NFDVFA--------KHEVLLAAGSAISPLILEYSGIGLKSVLDQ  315 (391)
T ss_dssp             EESCEEEEEEEEEETT--EEEEEEEEEEEETTE---EEEEEE--------EEEEEECSCTTTHHHHHHHTTEECHHHHHH
T ss_pred             hccceeeEEeeeCCCC--CceEEeeEEecCCCe---EEEEEe--------CCEEEEecchhcchHHHHhcCCCcHHHHHH
Confidence            9999999999875321  238999999886777   778887        677999999999999999999999999999


Q ss_pred             CCCCceecCc-ccccccccCcCceEEEecCCCCCCCCCcceeeeeecCCCCCCcccEEeeecCcCcceEEEecCCCCCCC
Q 009873          317 LNIPTIVDLQ-EVGEGMQDNPCIAKLVDTMPQKRLPEPPEVVAGVLPISSNASRMPIAAKLAFPISKGKLELDSTDPRQN  395 (523)
Q Consensus       317 ~gi~~~~~~p-~vG~~l~dh~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~p~s~g~v~l~~~d~~~~  395 (523)
                      +||+++.++| +||+||+||.                                                           
T Consensus       316 ~gI~~v~dlP~Gvg~nl~dh~-----------------------------------------------------------  336 (391)
T d1gpea1         316 ANVTQLLDLPVGICSMMSREL-----------------------------------------------------------  336 (391)
T ss_dssp             TTCCCSEECCTTCTCBSCGGG-----------------------------------------------------------
T ss_pred             CCCCEEEECCcccccccccCc-----------------------------------------------------------
Confidence            9999999999 6999998882                                                           


Q ss_pred             CeeecCCCCChhhHHHHHHHHHHHHHHhcccccccccCCCCCCCCCCCHHHHHHHHHcccccccccccceecccccCCCC
Q 009873          396 PSIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSFLGIKPQEKLMSNSDELRKLCKNNVRTFYHYHGGCIVGSVVDKDY  475 (523)
Q Consensus       396 p~i~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gt~~MG~VvD~~~  475 (523)
                                                                                              |.|||..+
T Consensus       337 ------------------------------------------------------------------------~~~v~~~~  344 (391)
T d1gpea1         337 ------------------------------------------------------------------------GGVVDATA  344 (391)
T ss_dssp             ------------------------------------------------------------------------TCSBCTTC
T ss_pred             ------------------------------------------------------------------------cceeeeee
Confidence                                                                                    13788899


Q ss_pred             cEeccCCcEEeeccccCCCCCCCcHHHHHHHHHHHHHHHHHHHhh
Q 009873          476 RVYGVKGLRVIDGSTFQESPGTNPMATVMMLGRYQGVKLVEERRE  520 (523)
Q Consensus       476 rv~g~~nL~V~D~Sv~P~~~~~nPtlTi~Ala~r~a~~i~~~~~~  520 (523)
                      ||+|++||+++|+|++|....+|++.+++++++++|+.|++++..
T Consensus       345 ~v~~~~~l~~~~~s~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (391)
T d1gpea1         345 KVYGTQGLRVIDGSIPPTQVSSHVMTIFYGMALKVADAILDDYAK  389 (391)
T ss_dssp             BBTTCBSEEECSTTCCSSCCSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eecCCCChhhhccccCccccccchhhhhhhhHhhhhHHHHHHhhh
Confidence            999999999999999999999999999999999999999988764

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=100.00  E-value=4.5e-48  Score=392.21  Aligned_cols=333  Identities=30%  Similarity=0.446  Sum_probs=249.5

Q ss_pred             ccccccccCCcccEEEECCCCchHHHHhhhhc-c-CeeEEEecCCCCCC-CCCccccchhccccCCC--CCCccccccCc
Q 009873           43 TSDVKEVAGKSFDYIVVGGGTTGCPLAATLSD-N-FSVLLVERGGSPFG-NPLVTDKRFFGFSLLQT--DEYTSVAQSFI  117 (523)
Q Consensus        43 ~~~~~~~~~~~~DvIIVGsG~aG~~~A~~Lae-g-~~VlvlE~G~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  117 (523)
                      .+.+++...++|||||||||++|+++|.||+| + .+|||||+|+.... .+....+..+...+...  ..|.+. +...
T Consensus         7 ~~~p~~~~~~tyD~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~~~~~~~~~~~~~~~~~~~~~~~~dw~~~t~-~~~~   85 (385)
T d1cf3a1           7 LTDPKDVSGRTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDIFGSSVDHAYETV-ELAT   85 (385)
T ss_dssp             BCCGGGTTTCEEEEEEECCSHHHHHHHHHHTTSTTCCEEEEESSCCCTTSCHHHHBGGGTTTTTTSTTBCCEECC-CCTT
T ss_pred             hCCcccccCCeEEEEEECcCHHHHHHHHHHHHCCCCeEEEECCCCCCCCCCccccCHhHHhhhcCCCCCcCcccc-CcCC
Confidence            34555667788999999999999999999999 5 89999999975432 22233344444333222  123333 3345


Q ss_pred             CCCceeecCceecccccccCCccccCCChhhHhh-------CCCCHHHHHHHhHhhhccccCC-----------------
Q 009873          118 STDGVQNHRGRVLGGSSAINGGFYSRAREDFVKK-------AGWDEELVKKAYEWVESKVVFP-----------------  173 (523)
Q Consensus       118 ~~~~~~~~~g~~lGG~s~~~~~~~~r~~~~~~~~-------~~w~~~~~~~~~~~~~~~~~~~-----------------  173 (523)
                      .++.+.+.+|+++||+|.+|+|++.|+.+.+++.       .+|.|+++.+||++.|+.....                 
T Consensus        86 ~~r~~~~~~G~~lGGsS~in~~~~~R~~~~d~d~w~~~~~~~gw~~~~l~Pyf~k~E~~~~~~~~~~~~~~~~~~~~~g~  165 (385)
T d1cf3a1          86 NNQTALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWNWDNVAAYSLQAERARAPNAKQIAAGHYFNASCHGV  165 (385)
T ss_dssp             TSCCCEECCBCSTTGGGGTSCCBCCCCCHHHHHHHHHTTCCTTCSHHHHHHHHHHHEEECCCCHHHHHHTCCCCGGGSCS
T ss_pred             CCceeeecccccccccceeeeeeeeccChhhhcccccccCCCcCchhhhHHHHHHHHhhcCCCcccccccccccccccCC
Confidence            6677888999999999999999999998876643       4799999999999998753210                 


Q ss_pred             ------------CCCChhHHHHHHHHHHcCCCCCCCCCcCCCCcceeeeeEEcCCCeeechH-hh-hhhCCCCCeEEEec
Q 009873          174 ------------PELTPWQSVVEFGLLEAGILPYNGYSLEHIEGTKIGGTAFDQCGKRHTSA-DL-LEAGNPKNLVVLLN  239 (523)
Q Consensus       174 ------------p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~-l~~~~~~g~~i~~~  239 (523)
                                  ....+..+.+.+++.++|++...+.......++....+..+....+..+. .+ .+..+++|++|+++
T Consensus       166 ~~~~~~~~~~~~~~~~p~~~~~~~a~~~~G~~~~~d~n~~~~~~~~~~~~~~~~~~~~~~s~~~~~~p~~~~~nl~i~t~  245 (385)
T d1cf3a1         166 NGTVHAGPRDTGDDYSPIVKALMSAVEDRGVPTKKDFGCGDPHGVSMFPNTLHEDQVRSDAAREWLLPNYQRPNLQVLTG  245 (385)
T ss_dssp             SSSEEEBCCCCSSCBCTHHHHHHHHHHTTTCCBCCCTTSSCCCEEECCCBSBCTTCBBCCHHHHHTGGGTTCTTEEEEES
T ss_pred             cccccccccccccccCHHHHHHHHHHHHcCCCCcCCcccccccccccccccccccccchhhhhhhcCchhcCCcccccCC
Confidence                        12345678888889999986544333222233222222223333444333 33 34788999999999


Q ss_pred             cEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHhhCCCChhhhhhCCC
Q 009873          240 ATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSGIGPHDHLKDLNI  319 (523)
Q Consensus       240 ~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~SGig~~~~l~~~gi  319 (523)
                      +.|++|++++++.  ..|++||++.+.+|+   .++++|        +|+||||||+|+||+|||+||||++++|+++||
T Consensus       246 ~~V~rI~~~~~~~--~~ra~GV~~~~~~g~---~~~v~A--------~keVILsAGAi~SP~LLl~SGIGp~~~L~~~gI  312 (385)
T d1cf3a1         246 QYVGKVLLSQNGT--TPRAVGVEFGTHKGN---THNVYA--------KHEVLLAAGSAVSPTILEYSGIGMKSILEPLGI  312 (385)
T ss_dssp             CEEEEEEEECSSS--SCEEEEEEEEEETTE---EEEEEE--------EEEEEECSCTTTHHHHHHHTTBSCHHHHGGGTC
T ss_pred             ceEEEEEEcCCCc--eeEEEEEEEEcCCCC---EEEEEe--------CCEEEEcCchhhCHHHHHhcCCCcHHHHHHCCC
Confidence            9999999987542  348999999887788   888887        567999999999999999999999999999999


Q ss_pred             CceecCcccccccccCcCceEEEecCCCCCCCCCcceeeeeecCCCCCCcccEEeeecCcCcceEEEecCCCCCCCCeee
Q 009873          320 PTIVDLQEVGEGMQDNPCIAKLVDTMPQKRLPEPPEVVAGVLPISSNASRMPIAAKLAFPISKGKLELDSTDPRQNPSIK  399 (523)
Q Consensus       320 ~~~~~~p~vG~~l~dh~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~p~s~g~v~l~~~d~~~~p~i~  399 (523)
                      +++.++| ||.+.++|                                                                
T Consensus       313 ~~~~dlP-~g~~~~~~----------------------------------------------------------------  327 (385)
T d1cf3a1         313 DTVVDLP-VGLCSMMP----------------------------------------------------------------  327 (385)
T ss_dssp             CCSBCCC-TTCTCBSC----------------------------------------------------------------
T ss_pred             CeEEECC-cchhccCC----------------------------------------------------------------
Confidence            9988877 43221110                                                                


Q ss_pred             cCCCCChhhHHHHHHHHHHHHHHhcccccccccCCCCCCCCCCCHHHHHHHHHcccccccccccceecccccCCCCcEec
Q 009873          400 FNYLAKEKDLHECVKMVQLLDKVTKSQSVSSFLGIKPQEKLMSNSDELRKLCKNNVRTFYHYHGGCIVGSVVDKDYRVYG  479 (523)
Q Consensus       400 ~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gt~~MG~VvD~~~rv~g  479 (523)
                                                                                  |     .+|+|||+..+|+|
T Consensus       328 ------------------------------------------------------------~-----~~~~vv~~~~~v~g  342 (385)
T d1cf3a1         328 ------------------------------------------------------------K-----EMGGVVDNAARVYG  342 (385)
T ss_dssp             ------------------------------------------------------------G-----GGTCSBCTTSBBTT
T ss_pred             ------------------------------------------------------------C-----Cccccccccccccc
Confidence                                                                        1     12369999999999


Q ss_pred             cCCcEEeeccccCCCCCCCcHHHHHHHHHHHHHHHHHHHh
Q 009873          480 VKGLRVIDGSTFQESPGTNPMATVMMLGRYQGVKLVEERR  519 (523)
Q Consensus       480 ~~nL~V~D~Sv~P~~~~~nPtlTi~Ala~r~a~~i~~~~~  519 (523)
                      ++||+|+|+|++|..++.||+.|.+|+|+|+||-|++++-
T Consensus       343 ~~~lr~v~~s~~p~~~~~~~~~~~~~~a~~~~d~i~~~~~  382 (385)
T d1cf3a1         343 VQGLRVIDGSIPPTQMSSHVMTVFYAMALKISDAILEDYA  382 (385)
T ss_dssp             CBSEEECSTTCCSSCCSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCeEeecCcCCcccccCchhHHHHHHhhhhHHHHHHHHh
Confidence            9999999999999999999999999999999999987763

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=100.00  E-value=2e-46  Score=376.38  Aligned_cols=327  Identities=24%  Similarity=0.300  Sum_probs=234.4

Q ss_pred             cccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCCCCCCccccchhcc--ccCCC------CCCccccccCcCCCcee
Q 009873           53 SFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPFGNPLVTDKRFFGF--SLLQT------DEYTSVAQSFISTDGVQ  123 (523)
Q Consensus        53 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~~~~~~~~~~~~~~--~~~~~------~~~~~~~~~~~~~~~~~  123 (523)
                      .|||||||||++|+++|.||+| |+||||||+|+.............+..  .....      ..+.+.++.....+.+.
T Consensus         2 ~YD~IIVGsG~aG~v~A~rLae~g~~VlvLEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (360)
T d1kdga1           2 PYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDIPGLFESLFTDSNPFWWCKDIT   81 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCCSGGGTCCCCCGGGGGGTCCTTTCGGGGGGGGTCSCCTTBCTTBS
T ss_pred             cCCEEEECcCHHHHHHHHHHhhCCCeEEEEEccCCCCcccccccccchhhccCcccccCcccccccccCCCcccCCcccc
Confidence            6999999999999999999999 899999999974322211111111111  11110      11233345556667788


Q ss_pred             ecCceecccccccCCccccCCChhhHhh-CCC--CHHHHHHHhHhhhccccCCC--------CCChhHHHHHHHHHHcCC
Q 009873          124 NHRGRVLGGSSAINGGFYSRAREDFVKK-AGW--DEELVKKAYEWVESKVVFPP--------ELTPWQSVVEFGLLEAGI  192 (523)
Q Consensus       124 ~~~g~~lGG~s~~~~~~~~r~~~~~~~~-~~w--~~~~~~~~~~~~~~~~~~~p--------~~~~~~~~~~~~~~~~g~  192 (523)
                      +.+|+++||+|.+|++++.|+.+.+++. .+|  .++++.+||+++|+.+...+        ........+.+.++..++
T Consensus        82 ~~~G~~lGGsS~in~~~~~r~~~~D~~~~~gwp~~~~~l~py~~~~e~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~  161 (360)
T d1kdga1          82 VFAGCLVGGGTSVNGALYWYPNDGDFSSSVGWPSSWTNHAPYTSKLSSRLPSTDHPSTDGQRYLEQSFNVVSQLLKGQGY  161 (360)
T ss_dssp             SCCBCSTTGGGGTSCCBCCCCCGGGGCGGGTCCGGGSCCHHHHHHHHHHSCCBSCCSTTSCCCSCHHHHHHHHHHHTTTC
T ss_pred             ccceeeecchhccccccccccchhhheecccccccccchhhhhhhhhccccccceecCCCcccccchhHHHHHHHHHhhc
Confidence            8999999999999999999988765543 456  56899999999998765432        123334455556666665


Q ss_pred             CCCCCCCcCCCCcceeeee-EEcCCCeeechHh-hhh-hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCC
Q 009873          193 LPYNGYSLEHIEGTKIGGT-AFDQCGKRHTSAD-LLE-AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGS  269 (523)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~-~l~-~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~  269 (523)
                      ....-...........+.+ .-+.+|.|+++.. +++ +..++|++|++++.|++|+++++      +++||++.+....
T Consensus       162 ~~~~~~~~~~~~~~~~g~~~~~~~~G~R~s~~~~yl~~a~~r~nl~i~t~~~V~rI~~d~~------ra~GV~~~~~~~~  235 (360)
T d1kdga1         162 NQATINDNPNYKDHVFGYSAFDFLNGKRAGPVATYLQTALARPNFTFKTNVMVSNVVRNGS------QILGVQTNDPTLG  235 (360)
T ss_dssp             EECCGGGSTTCCTTEEEECCBCEETTEECHHHHTHHHHHHTCTTEEEECSCCEEEEEEETT------EEEEEEESCTTSS
T ss_pred             cCCCcccCCCccccccceeeeeccccccccccchhhhhhhcccccccccCcEEEEEEEeCC------EEEEEEEEecccC
Confidence            3211000011111112212 1245688887665 455 66789999999999999999876      9999999764322


Q ss_pred             CCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHhhCCCChhhhhhCCCCceecCcccccccccCcCceEEEecCCCCC
Q 009873          270 SNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSGIGPHDHLKDLNIPTIVDLQEVGEGMQDNPCIAKLVDTMPQKR  349 (523)
Q Consensus       270 ~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~SGig~~~~l~~~gi~~~~~~p~vG~~l~dh~~~~~~~~~~~~~~  349 (523)
                      .....++.+        +++||||||+++||+|||+||||+.++|+.+||.     |.||+++.+|..            
T Consensus       236 ~~~~~~v~a--------~~eVILsAGai~SP~LLl~SGIGp~~~L~~~gi~-----p~v~~~l~~~~~------------  290 (360)
T d1kdga1         236 PNGFIPVTP--------KGRVILSAGAFGTSRILFQSGIGPTDMIQTVQSN-----PTAAAALPPQNQ------------  290 (360)
T ss_dssp             GGGEEEEEE--------EEEEEECSHHHHHHHHHHHTTBSCHHHHHHHHTS-----HHHHHHSCCGGG------------
T ss_pred             cceEEEEEE--------CCEEEEechhHhChHHHHhcCCCchhhhHHhhcC-----cccccccccccc------------
Confidence            112556665        6889999999999999999999999999988873     557766644310            


Q ss_pred             CCCCcceeeeeecCCCCCCcccEEeeecCcCcceEEEecCCCCCCCCeeecCCCCChhhHHHHHHHHHHHHHHhcccccc
Q 009873          350 LPEPPEVVAGVLPISSNASRMPIAAKLAFPISKGKLELDSTDPRQNPSIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVS  429 (523)
Q Consensus       350 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~p~s~g~v~l~~~d~~~~p~i~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~  429 (523)
                                                                                                      
T Consensus       291 --------------------------------------------------------------------------------  290 (360)
T d1kdga1         291 --------------------------------------------------------------------------------  290 (360)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCCCCCCCCCCHHHHHHHHHcccccccccccceecc-----cccCCCCcEeccCCcEEeeccccCCCCCCCcHHHHH
Q 009873          430 SFLGIKPQEKLMSNSDELRKLCKNNVRTFYHYHGGCIVG-----SVVDKDYRVYGVKGLRVIDGSTFQESPGTNPMATVM  504 (523)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gt~~MG-----~VvD~~~rv~g~~nL~V~D~Sv~P~~~~~nPtlTi~  504 (523)
                                                 ...|+.|+|.|+     .|||++.+++|..||+|+|+|+||..+..||+.++|
T Consensus       291 ---------------------------~~~~p~g~~~~~~~~~~~v~~~~~~~~g~~~l~~~~a~~~p~~~~~~~~~~~~  343 (360)
T d1kdga1         291 ---------------------------WINLPVGMTTIGSSPQSAVVDSNVKVFGTNNLFIVDAGIIPHLPTGNPQGTLM  343 (360)
T ss_dssp             ---------------------------CBCCCTTTTCBCSCTTTCSBCTTCBBTTCSSEEECSGGGCSSCCSSCSHHHHH
T ss_pred             ---------------------------eecccceeeecCCCCcccEECccceeeccCCceEEeeecccccCCCCCCcchh
Confidence                                       023666666665     799999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 009873          505 MLGRYQGVKLVEE  517 (523)
Q Consensus       505 Ala~r~a~~i~~~  517 (523)
                      ++|+++||.|+.-
T Consensus       344 ~~ae~aa~~il~~  356 (360)
T d1kdga1         344 SAAEQAAAKILAL  356 (360)
T ss_dssp             HHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhhc
Confidence            9999999999863

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=100.00  E-value=3.8e-46  Score=372.80  Aligned_cols=283  Identities=44%  Similarity=0.776  Sum_probs=220.9

Q ss_pred             ccccccCCcccEEEECCCCchHHHHhhhhccCeeEEEecCCCCCCCCCccccchhccccCCCCCCccccccCcCCCceee
Q 009873           45 DVKEVAGKSFDYIVVGGGTTGCPLAATLSDNFSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEYTSVAQSFISTDGVQN  124 (523)
Q Consensus        45 ~~~~~~~~~~DvIIVGsG~aG~~~A~~Laeg~~VlvlE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (523)
                      ......+.+|||||||||++|+++|.||||++||||||+|+.+...+.......+...+.....+.+.++.....+.+.+
T Consensus        18 ~~~~~~~~~YD~IIVGsG~aG~vlA~rLae~~kVLvLEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (351)
T d1ju2a1          18 ATDLELEGSYDYVIVGGGTSGCPLAATLSEKYKVLVLERGSLPTAYPNVLTADGFVYNLQQEDDGKTPVERFVSEDGIDN   97 (351)
T ss_dssp             GGGSCSEEEEEEEEECCSTTHHHHHHHHTTTSCEEEECSSBCGGGSGGGGBGGGHHHHHHSCCCSSSSEEEEECTTSCEE
T ss_pred             CCCccccCCccEEEECccHHHHHHHHHhcCCCCEEEEecCCCCcCccccccchhhhccCcCCCCCCCccccccCCCceee
Confidence            33445567899999999999999999999999999999998654444444444443333334445556666677788899


Q ss_pred             cCceecccccccCCccccCCChhhHhh--CCCCHHHHHHHhHhhhccccCCCCCChhHHHHHHHHHHcCCCCCCCCCcCC
Q 009873          125 HRGRVLGGSSAINGGFYSRAREDFVKK--AGWDEELVKKAYEWVESKVVFPPELTPWQSVVEFGLLEAGILPYNGYSLEH  202 (523)
Q Consensus       125 ~~g~~lGG~s~~~~~~~~r~~~~~~~~--~~w~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~  202 (523)
                      .+|++|||+|.+|+++++|+.+.+++.  .+|+++++.++|+++++.....|....+...+.+++.+.|+++..+.....
T Consensus        98 ~rG~~lGGsS~in~~~~~R~~~~dfd~~~~~W~~~~~~p~~~~~e~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~  177 (351)
T d1ju2a1          98 VRGRVLGGTSIINAGVYARANTSIYSASGVDWDMDLVNQTYEWVEDTIVYKPNSQSWQSVTKTAFLEAGVHPNHGFSLDH  177 (351)
T ss_dssp             EEECBTTGGGGTSCCEECBCCTTSSTTSSSCCCHHHHHHHHHHHHHHHCBCCCCCHHHHHHHHHHHHTTCCCEEEECCBC
T ss_pred             eeeeecccccccceeeeccCCHHHHhhcccccChhHhCcceeecccccccccccccccccccchhhhhcccccccccccc
Confidence            999999999999999999988877765  468899999999999998888887777778888888888886533322222


Q ss_pred             CCcceeeeeEEcCCCeeechHhhhhhCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeE--EEecC
Q 009873          203 IEGTKIGGTAFDQCGKRHTSADLLEAGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHE--AYLNK  280 (523)
Q Consensus       203 ~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~--i~a~~  280 (523)
                      ..+.......++..+.++....++..+.++|++|++++.|++|+++++.+   .+++||++.+.++.   .++  +++  
T Consensus       178 ~~~~~~~~~~~~~~~~~s~~~~~l~~a~~~nl~i~~~~~V~rv~~~~~~g---~~a~gV~~~~~~g~---~~~~~v~a--  249 (351)
T d1ju2a1         178 EEGTRITGSTFDNKGTRHAADELLNKGNSNNLRVGVHASVEKIIFSNAPG---LTATGVIYRDSNGT---PHQAFVRS--  249 (351)
T ss_dssp             CSEEEECEESBCTTSBBCCGGGGGGGSCTTTEEEEESCEEEEEEECCSSS---CBEEEEEEECTTSC---EEEEEEEE--
T ss_pred             ccccccccccccCCCcccccchhhccchhhhhhhhccchhhceeeecccc---ceeeEEEEEeCCCc---eEEEEeec--
Confidence            23333333334455666666666777789999999999999999986422   28999999987665   433  444  


Q ss_pred             CCCCCCCCcEEEecCCchhHHHHHhhCCCChhhhhhCCCCceecCcccccccccCcCceEE
Q 009873          281 PGNSSTWGDVILSAGALGSPQLLLLSGIGPHDHLKDLNIPTIVDLQEVGEGMQDNPCIAKL  341 (523)
Q Consensus       281 ~~~~~~~~~VILaaGa~~tp~lLl~SGig~~~~l~~~gi~~~~~~p~vG~~l~dh~~~~~~  341 (523)
                            ++.||||||+|+||+|||+|||||.++|+++||+++.++|+||+||+||+....+
T Consensus       250 ------~~eVILsAGaI~TP~LLl~SGIGp~~~L~~~gI~~~~dlPgVG~NL~DH~~~~~~  304 (351)
T d1ju2a1         250 ------KGEVIVSAGTIGTPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQCLVGKVLDGDF  304 (351)
T ss_dssp             ------EEEEEECCHHHHHHHHHHHTTEECHHHHHHTTCCCSEECTTTTESCBTTTBCTTS
T ss_pred             ------CcEEEEeCccccCHHHHHHcCCCCHHHHHHcCCCeeccCCCcccccccCcCcceE
Confidence                  5789999999999999999999999999999999999999999999999765433

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=100.00  E-value=1.4e-39  Score=328.45  Aligned_cols=312  Identities=19%  Similarity=0.178  Sum_probs=192.4

Q ss_pred             cCCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCCCCCCccccc----------hhcc-------cc-CCCC---
Q 009873           50 AGKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPFGNPLVTDKR----------FFGF-------SL-LQTD---  107 (523)
Q Consensus        50 ~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~~~~~~~~~~----------~~~~-------~~-~~~~---  107 (523)
                      ++.+|||||||||++|+++|.+|++ |+||||||+|.............          .+..       .. ....   
T Consensus         1 md~~yDviIVGsG~aG~v~A~~La~~G~kVlvLEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (379)
T d2f5va1           1 MDIKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDSGLKIGAHKKNTVEYQKNIDKFVNVIQGQLMSVSVPVNTLV   80 (379)
T ss_dssp             CCSEEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCSSSSTTCCTTCSHHHHHCGGGHHHHHHHTCEESCCCCCCCC
T ss_pred             CCCcccEEEECcCHHHHHHHHHHhhCCCeEEEEecCCCCCCcccccchhhcccccccccccccccccccccccccccccc
Confidence            4689999999999999999999999 99999999997543322211110          0000       00 0000   


Q ss_pred             -------------CC-c--cccccCcCCCceeecCceecccccccCCccccCCChhhHhhC----------CCC--HHHH
Q 009873          108 -------------EY-T--SVAQSFISTDGVQNHRGRVLGGSSAINGGFYSRAREDFVKKA----------GWD--EELV  159 (523)
Q Consensus       108 -------------~~-~--~~~~~~~~~~~~~~~~g~~lGG~s~~~~~~~~r~~~~~~~~~----------~w~--~~~~  159 (523)
                                   .+ .  ..+..........+..++.+||.+.+|.+.+.+..+.++...          .|+  ++.+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gg~~~~~~~~~~r~~~~d~~~~~~~~~~~~~~~~~~~~~~~  160 (379)
T d2f5va1          81 VDTLSPTSWQASTFFVRNGSNPEQDPLRNLSGQAVTRVVGGMSTHWTCATPRFDREQRPLLVKDDADADDAEWDRLYTKA  160 (379)
T ss_dssp             CCCSCTTSCCCSSCCCCTTCCTTCCTTSCCTTCEECCSTTGGGGTCCCBCCCCCGGGSCCSSSSCHHHHHHHHHHHHHHH
T ss_pred             ccCCCCCCccCCCeEeccCCCchhhhhhccccchhhhcCCCCccccccEeccCCHHHhhhccccCCCccCCcCccchhhh
Confidence                         00 0  000000001112234567899999999999999776554321          111  1334


Q ss_pred             HHHhHhhhccccCCCCCChhHHHHHHHHHHcCCCCCCCCCcCCCCcceeeeeEEcCCCeeechH--------hhhhhCCC
Q 009873          160 KKAYEWVESKVVFPPELTPWQSVVEFGLLEAGILPYNGYSLEHIEGTKIGGTAFDQCGKRHTSA--------DLLEAGNP  231 (523)
Q Consensus       160 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--------~~l~~~~~  231 (523)
                      +++|...++.+..    ......+.+.+......+. .....     ............++...        ..+..+.+
T Consensus       161 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (379)
T d2f5va1         161 ESYFQTGTDQFKE----SIRHNLVLNKLAEEYKGQR-DFQQI-----PLAATRRSPTFVEWSSANTVFDLQNRPNTDAPE  230 (379)
T ss_dssp             HHHHTEESCTTTT----CHHHHHHHHHHHHHTTTSS-CCEEC-----CEEEEEEETTEEEECCHHHHCCCCCEEETTEEE
T ss_pred             hhhhhHHHHHHHH----HHHhcCCCCCccccccccc-Ccccc-----cchhccCCCCCCCcCCCCcccchhhcchHHhcC
Confidence            4444433332211    1112222223222221110 00000     00000001111111111        11224456


Q ss_pred             CCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecC-CCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHhhCCCC
Q 009873          232 KNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSD-GSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSGIGP  310 (523)
Q Consensus       232 ~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~-g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~SGig~  310 (523)
                      +|++|++++.|++|++++.+.    +++||++.+.. |+   .+++.+         +.||||||+++||+||++||++.
T Consensus       231 ~~~~l~~~a~V~~i~~~~~~~----r~~gV~~~d~~~g~---~~~i~a---------~~vilaaGa~~tp~lL~~Sg~~~  294 (379)
T d2f5va1         231 ERFNLFPAVACERVVRNALNS----EIESLHIHDLISGD---RFEIKA---------DVYVLTAGAVHNTQLLVNSGFGQ  294 (379)
T ss_dssp             EEEEEECSEEEEEEEECTTSS----CEEEEEEEETTTCC---EEEEEE---------EEEEECSCHHHHHHHHHHTTSSC
T ss_pred             CCCEEecCCEEEEEEEeCCCC----EEEEEEEEECCCCE---EEEEec---------eEEEeccCccCCHHHHhhccccc
Confidence            799999999999999987654    89999998854 66   778887         99999999999999999999875


Q ss_pred             hhhhhhCCCCceecCcccccccccCcCceEEEecCCCCCCCCCcceeeeeecCCCCCCcccEEeeecCcCcceEEEecCC
Q 009873          311 HDHLKDLNIPTIVDLQEVGEGMQDNPCIAKLVDTMPQKRLPEPPEVVAGVLPISSNASRMPIAAKLAFPISKGKLELDST  390 (523)
Q Consensus       311 ~~~l~~~gi~~~~~~p~vG~~l~dh~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~p~s~g~v~l~~~  390 (523)
                      ...+.                    +.                                                     
T Consensus       295 ~~~~~--------------------~~-----------------------------------------------------  301 (379)
T d2f5va1         295 LGRPN--------------------PT-----------------------------------------------------  301 (379)
T ss_dssp             CSSCC--------------------TT-----------------------------------------------------
T ss_pred             ccccc--------------------cc-----------------------------------------------------
Confidence            31100                    00                                                     


Q ss_pred             CCCCCCeeecCCCCChhhHHHHHHHHHHHHHHhcccccccccCCCCCCCCCCCHHHHHHHHHcccccccccccceecc--
Q 009873          391 DPRQNPSIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSFLGIKPQEKLMSNSDELRKLCKNNVRTFYHYHGGCIVG--  468 (523)
Q Consensus       391 d~~~~p~i~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gt~~MG--  468 (523)
                         ..|.    +                             .                      .....|.+|||+|+  
T Consensus       302 ---~~~~----~-----------------------------~----------------------~~~g~h~mG~~~~~~~  323 (379)
T d2f5va1         302 ---NPPE----L-----------------------------L----------------------PSLGSHRMGFDEKEDN  323 (379)
T ss_dssp             ---SCCS----S-----------------------------S----------------------TTTTBTCBCSCTTTTT
T ss_pred             ---cCcc----c-----------------------------c----------------------cccceeecccCCCCCC
Confidence               0000    0                             0                      01257999999997  


Q ss_pred             cccCCCCcEeccCCcEEeeccccCCCCCCCcHHHHHHHHHHHHHHHHHHH
Q 009873          469 SVVDKDYRVYGVKGLRVIDGSTFQESPGTNPMATVMMLGRYQGVKLVEER  518 (523)
Q Consensus       469 ~VvD~~~rv~g~~nL~V~D~Sv~P~~~~~nPtlTi~Ala~r~a~~i~~~~  518 (523)
                      +|||+++||||++||||+|+||||+++++|||+|++|||+|+|++|+++.
T Consensus       324 ~vvd~~~~v~g~~nlyv~d~sv~p~~~~~nPt~t~~alA~r~a~~i~~~~  373 (379)
T d2f5va1         324 CCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLAIKSCEYIKQNF  373 (379)
T ss_dssp             CSBCTTCBBTTCSSEEECSGGGCCSCCCSCSHHHHHHHHHHHHHHHHHHC
T ss_pred             ccCCCCCcccccCCEEEeCCcccCCccccCcHHHHHHHHHHHHHHHHHhh
Confidence            89999999999999999999999999999999999999999999999875

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=100.00  E-value=2.6e-36  Score=303.70  Aligned_cols=313  Identities=22%  Similarity=0.231  Sum_probs=205.4

Q ss_pred             ccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCCCCC-Ccccc-ch---hc-cccC-CC-----CC------------
Q 009873           54 FDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPFGNP-LVTDK-RF---FG-FSLL-QT-----DE------------  108 (523)
Q Consensus        54 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~~~~-~~~~~-~~---~~-~~~~-~~-----~~------------  108 (523)
                      +||||||||++|+++|.+|+| |+||||||+|..+.... ..... ..   .. ..+. ..     ..            
T Consensus         3 v~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (367)
T d1n4wa1           3 VPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLWNQPGPDGNIFCGMLNPDKRSSWFKNRTEAPLGSFLWLDVVNRNID   82 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCCCCCCTTSSSSCCTTSCCGGGSBSCSBCCCCTTCHHHHGGGCCBCC
T ss_pred             CeEEEeCcCHHHHHHHHHHHHCcCeEEEEecCCCCCCccccccccccccccccccccccccccccccccccccCCCcccc
Confidence            699999999999999999999 99999999996432211 10000 00   00 0000 00     00            


Q ss_pred             CccccccCcCCCceeecCceecccccccCCccccCCChhhHhhC-C--CCHHHHHHHhHhhhccccCCC---------CC
Q 009873          109 YTSVAQSFISTDGVQNHRGRVLGGSSAINGGFYSRAREDFVKKA-G--WDEELVKKAYEWVESKVVFPP---------EL  176 (523)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~g~~lGG~s~~~~~~~~r~~~~~~~~~-~--w~~~~~~~~~~~~~~~~~~~p---------~~  176 (523)
                      .....+.....+.+.+.+++++||+|.+|++.+.|+.+.+++.+ .  |.++++.+||+++++.+...+         ..
T Consensus        83 ~~~g~~~~~~~~~~~~~~g~~lGG~S~i~~~~~~r~~~~~f~~~~~~~~~~~~l~pyy~~ae~~l~~~~~~~~~~~~~~~  162 (367)
T d1n4wa1          83 PYAGVLDRVNYDQMSVYVGRGVGGGSLVNGGMAVEPKRSYFEEILPRVDSSEMYDRYFPRANSMLRVNHIDTKWFEDTEW  162 (367)
T ss_dssp             CCBCSEEEEECSSCEEEEECSTTGGGGTSCCBCCCCCHHHHHHHCTTSCHHHHHHTHHHHHHHHHTCBCCCHHHHHHCGG
T ss_pred             cccCccccccCCccceeeEEecCCCCceecceeeccChhHhhccccccCcHHHHHHHHHHHHHHhCCCCCCCCccccCCC
Confidence            00001112223456678899999999999999999988777642 2  235889999999999876553         12


Q ss_pred             ChhHHHHHHHHHHcCCCCCCC---CCc---------CCCCcceeeeeE-EcCCCeeechHhhhh-hCCCCCeEEEeccEE
Q 009873          177 TPWQSVVEFGLLEAGILPYNG---YSL---------EHIEGTKIGGTA-FDQCGKRHTSADLLE-AGNPKNLVVLLNATV  242 (523)
Q Consensus       177 ~~~~~~~~~~~~~~g~~~~~~---~~~---------~~~~~~~~~~~~-~~~~g~~~~~~~~l~-~~~~~g~~i~~~~~V  242 (523)
                      .+..+.+.+.+...|+.+...   ...         ........+.+. ++..++......+++ +.++.|++|+++|+|
T Consensus       163 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~k~s~~~~yl~~a~~~gn~~i~~~t~V  242 (367)
T d1n4wa1         163 YKFARVSREQAGKAGLGTVFVPNVYDFGYMQREAAGEVPKSALATEVIYGNNHGKQSLDKTYLAAALGTGKVTIQTLHQV  242 (367)
T ss_dssp             GHHHHHHHHHHHHTTCCEEECCBSBCHHHHHHHHTTSSCCSGGGTCSTTCCSSSBCCTTTTHHHHHHHTTSEEEEESEEE
T ss_pred             ChHHHHHHHHHHHcCcccccccchhhcCCcccccccccCcccccccccccccccccChhHhhhHHHHhCCCeEEECCCEE
Confidence            233455666777777643210   000         000001111111 122333333444566 556678999999999


Q ss_pred             EEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHhhCCCChhhhhhCCCCce
Q 009873          243 NNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSGIGPHDHLKDLNIPTI  322 (523)
Q Consensus       243 ~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~SGig~~~~l~~~gi~~~  322 (523)
                      ++|.+++++.    ++++|++.+.+++....+++.|         |.||||||+++||+|||+|.-..  .|.       
T Consensus       243 ~~I~~~~~g~----~~v~v~~~~~~~~~~~~~~i~A---------k~VVLaAGai~Tp~LLl~S~~~g--~l~-------  300 (367)
T d1n4wa1         243 KTIRQTKDGG----YALTVEQKDTDGKLLATKEISC---------RYLFLGAGSLGSTELLVRARDTG--TLP-------  300 (367)
T ss_dssp             EEEEECTTSS----EEEEEEEECTTCCEEEEEEEEE---------EEEEECSHHHHHHHHHHHHHHTT--SST-------
T ss_pred             EEEEEcCCCC----EEEEEEEECCCCcceeEEEEec---------CEEEEecchhcCHHHHHhCCCCC--CCC-------
Confidence            9999988754    7888888775554212356776         99999999999999999993100  000       


Q ss_pred             ecCcccccccccCcCceEEEecCCCCCCCCCcceeeeeecCCCCCCcccEEeeecCcCcceEEEecCCCCCCCCeeecCC
Q 009873          323 VDLQEVGEGMQDNPCIAKLVDTMPQKRLPEPPEVVAGVLPISSNASRMPIAAKLAFPISKGKLELDSTDPRQNPSIKFNY  402 (523)
Q Consensus       323 ~~~p~vG~~l~dh~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~p~s~g~v~l~~~d~~~~p~i~~~~  402 (523)
                      ..++.||+|+                                                                      
T Consensus       301 ~~s~~lG~~~----------------------------------------------------------------------  310 (367)
T d1n4wa1         301 NLNSEVGAGW----------------------------------------------------------------------  310 (367)
T ss_dssp             TCCTTTTCCB----------------------------------------------------------------------
T ss_pred             CccHhhcCCc----------------------------------------------------------------------
Confidence            0012233221                                                                      


Q ss_pred             CCChhhHHHHHHHHHHHHHHhcccccccccCCCCCCCCCCCHHHHHHHHHcccccccccccceecccccCCCCcEeccCC
Q 009873          403 LAKEKDLHECVKMVQLLDKVTKSQSVSSFLGIKPQEKLMSNSDELRKLCKNNVRTFYHYHGGCIVGSVVDKDYRVYGVKG  482 (523)
Q Consensus       403 ~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gt~~MG~VvD~~~rv~g~~n  482 (523)
                                                                                   .+-||.++|..++++|++|
T Consensus       311 -------------------------------------------------------------~~~l~~~~~~~g~~~~~~~  329 (367)
T d1n4wa1         311 -------------------------------------------------------------GCVLGKATDDYGRVAGYKN  329 (367)
T ss_dssp             -------------------------------------------------------------SSCTTTTBCTTSBBTTCSS
T ss_pred             -------------------------------------------------------------cccccccccccccccCCCC
Confidence                                                                         1123467788999999999


Q ss_pred             cEEeeccccCCCCCCCcHHHHHHHHHHHHHHHHHHHh
Q 009873          483 LRVIDGSTFQESPGTNPMATVMMLGRYQGVKLVEERR  519 (523)
Q Consensus       483 L~V~D~Sv~P~~~~~nPtlTi~Ala~r~a~~i~~~~~  519 (523)
                      +|+.|++++|.+.+.||++||.|||+|..++|+++++
T Consensus       330 ~~~~~g~~i~~~~~~~p~~t~~ala~~~~~~~~~~~~  366 (367)
T d1n4wa1         330 LYVTDGSLIPGSVGVNPFVTITALAERNVERIIKQDV  366 (367)
T ss_dssp             EEECSGGGSCSCCSSCSHHHHHHHHHHHHHHHHHHHC
T ss_pred             ccccCCccccCcCCCCcchhHHHHHHHHHHHHHHhhc
Confidence            9999999999999999999999999999999999875

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=100.00  E-value=3.3e-36  Score=303.29  Aligned_cols=315  Identities=18%  Similarity=0.216  Sum_probs=204.5

Q ss_pred             cCCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCCC-CCCccccc---------hhcccc--CCCC-------CC
Q 009873           50 AGKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPFG-NPLVTDKR---------FFGFSL--LQTD-------EY  109 (523)
Q Consensus        50 ~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~~-~~~~~~~~---------~~~~~~--~~~~-------~~  109 (523)
                      ..++|||||||||++|+++|.+|+| |+||||||+|..... ........         .|....  ....       .+
T Consensus         4 ~~~~~dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (370)
T d3coxa1           4 DGDRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGRSWDTPGSDGKIFCGMLNPDKRSMWLADKTDQPVSNFMGFGINK   83 (370)
T ss_dssp             TTCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCSCSCCTTSCSSCCSSSCCTTSBBSCSBCCCSSCSBTTBSCCC
T ss_pred             CCCCCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCcccccccccccccccccccccccccccccccccccccCc
Confidence            4568999999999999999999999 999999999963321 11110000         000000  0000       00


Q ss_pred             ccc----cccCcCCCceeecCceecccccccCCccccCCChhhHhhC---CCCHHHHHHHhHhhhccccCCC--------
Q 009873          110 TSV----AQSFISTDGVQNHRGRVLGGSSAINGGFYSRAREDFVKKA---GWDEELVKKAYEWVESKVVFPP--------  174 (523)
Q Consensus       110 ~~~----~~~~~~~~~~~~~~g~~lGG~s~~~~~~~~r~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~~p--------  174 (523)
                      ...    .......+.+.+.+++++||+|.+|++++.|+.+.+++.+   .+.++++.+||+++++.+...+        
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~g~~vGG~S~~~~~~~~r~~~~df~~~~~~~~~~~~~~~~y~~~e~~lgv~~~~~~~~~~  163 (370)
T d3coxa1          84 SIDRYVGVLDSERFSGIKVYQGRGVGGGSLVNGGMAVTPKRNYFEEILPSVDSNEMYNKYFPRANTGLGVNNIDQAWFES  163 (370)
T ss_dssp             BCCCCBCSEEEEECSSCEEEEECSTTGGGGTSCCBCCCCCHHHHHHHCTTSCHHHHHHTHHHHHHHHHTCBCCCHHHHHH
T ss_pred             ccccccccccccCCCcceeeeeccccccccccCceeccCCHHHhhcccccCCcHHHHHHHHHHHHHhcCCccccCCcccC
Confidence            000    1111223456678899999999999999999988776542   2235778999999999877654        


Q ss_pred             -CCChhHHHHHHHHHHcCCCCCCC---CCcC---------CCCcceeeeeEEcCCC-eeechHhhhh-hCCCCCeEEEec
Q 009873          175 -ELTPWQSVVEFGLLEAGILPYNG---YSLE---------HIEGTKIGGTAFDQCG-KRHTSADLLE-AGNPKNLVVLLN  239 (523)
Q Consensus       175 -~~~~~~~~~~~~~~~~g~~~~~~---~~~~---------~~~~~~~~~~~~~~~g-~~~~~~~~l~-~~~~~g~~i~~~  239 (523)
                       ...+..+.+.+...+.|+.+...   ..+.         ..+..+.+++..+..+ +.+....+|+ +.++.|++|+++
T Consensus       164 ~~~~~~~~~~~~~a~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~s~~~~~L~~a~~~g~~~i~t~  243 (370)
T d3coxa1         164 TEWYKFARTGRKTAQRSGFTTAFVPNVYDFEYMKKEAAGQVTKSGLGGEVIYGNNAGKKSLDKTYLAQAAATGKLTITTL  243 (370)
T ss_dssp             CGGGHHHHHHHHHHHHTTCCEEECCBSBCHHHHHHHHTTSSCCSTTTTCSTTCCSSSBCCGGGTHHHHHHHTTCEEEECS
T ss_pred             CCCccHHHHHHHHHHHcCCccccccccccccccccccccccccceecccccccccccccChHHHHHHHHHhCCCcEEEec
Confidence             22344566677777777743210   0000         0000001111112233 3334444566 556778999999


Q ss_pred             cEEEEEEEcCCCCCCCceeeEEEEE--ecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHhhCCCChhhhhhC
Q 009873          240 ATVNNIIFSNNGKANESRAHGIRFI--KSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSGIGPHDHLKDL  317 (523)
Q Consensus       240 ~~V~~l~~~~~g~~~~~~v~GV~~~--~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~SGig~~~~l~~~  317 (523)
                      ++|++|+++++      ++.+|.+.  +..++.....++.|         |.||||||+++||+|||+|.-.       .
T Consensus       244 ~~V~~I~~~~~------~~~~V~v~~~~~~~~~~~~~~~~A---------~~VILaAGai~Tp~LLL~S~~~-------~  301 (370)
T d3coxa1         244 HRVTKVAPATG------SGYSVTMEQIDEQGNVVATKVVTA---------DRVFFAAGSVGTSKLLVSMKAQ-------G  301 (370)
T ss_dssp             EEEEEEEECSS------SSEEEEEEEECTTSCEEEEEEEEE---------EEEEECSHHHHHHHHHHHHHHT-------T
T ss_pred             CcEEEEEEcCC------CeEEEEEEEeCCccceeeEEEEEC---------CEEEEeeCHHHhHHHHHhCCCC-------C
Confidence            99999999987      45555544  43344112346777         8999999999999999999210       0


Q ss_pred             CCCceecCcccccccccCcCceEEEecCCCCCCCCCcceeeeeecCCCCCCcccEEeeecCcCcceEEEecCCCCCCCCe
Q 009873          318 NIPTIVDLQEVGEGMQDNPCIAKLVDTMPQKRLPEPPEVVAGVLPISSNASRMPIAAKLAFPISKGKLELDSTDPRQNPS  397 (523)
Q Consensus       318 gi~~~~~~p~vG~~l~dh~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~p~s~g~v~l~~~d~~~~p~  397 (523)
                      +++  ..++.||+||.+                                                               
T Consensus       302 ~l~--~~s~~vG~~~g~---------------------------------------------------------------  316 (370)
T d3coxa1         302 HLP--NLSSQVGEGWGV---------------------------------------------------------------  316 (370)
T ss_dssp             SST--TSCTTTTCCBSS---------------------------------------------------------------
T ss_pred             CCC--CCCHhhCCCccc---------------------------------------------------------------
Confidence            000  012446665411                                                               


Q ss_pred             eecCCCCChhhHHHHHHHHHHHHHHhcccccccccCCCCCCCCCCCHHHHHHHHHcccccccccccceecccccCCCCcE
Q 009873          398 IKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSFLGIKPQEKLMSNSDELRKLCKNNVRTFYHYHGGCIVGSVVDKDYRV  477 (523)
Q Consensus       398 i~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gt~~MG~VvD~~~rv  477 (523)
                                                                                          .++..+|..+|+
T Consensus       317 --------------------------------------------------------------------~~~~~~~~~g~~  328 (370)
T d3coxa1         317 --------------------------------------------------------------------LLNKATDNFGRL  328 (370)
T ss_dssp             --------------------------------------------------------------------CTTTTSCTTSBC
T ss_pred             --------------------------------------------------------------------ccCccccccccc
Confidence                                                                                123456778899


Q ss_pred             eccCCcEEeeccccCCCCCCCcHHHHHHHHHHHHHHHHHHHh
Q 009873          478 YGVKGLRVIDGSTFQESPGTNPMATVMMLGRYQGVKLVEERR  519 (523)
Q Consensus       478 ~g~~nL~V~D~Sv~P~~~~~nPtlTi~Ala~r~a~~i~~~~~  519 (523)
                      +|++++||.|+|.+|.+.++||.+||.|+|+|.-++|+++++
T Consensus       329 ~~~~~~~~~d~~~~pg~~~~np~~t~~a~a~~~~~~~~~~~~  370 (370)
T d3coxa1         329 PEYPGLYVVDGSLVPGNVGVNPFVTITALAERNMDKIISSDI  370 (370)
T ss_dssp             TTSTTEEECSGGGSCSCCSSCSHHHHHHHHHHHHHHHHHHTC
T ss_pred             cCCCCceEeecccccCccCcCchhhHHHHHHHHHHHHHhhcC
Confidence            999999999999999888999999999999999999999863

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.78  E-value=2.9e-19  Score=173.72  Aligned_cols=192  Identities=18%  Similarity=0.215  Sum_probs=114.3

Q ss_pred             ccCCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCCCCCCccccchhccccCCCCCCccccccCcCCCceeecCc
Q 009873           49 VAGKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEYTSVAQSFISTDGVQNHRG  127 (523)
Q Consensus        49 ~~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  127 (523)
                      .+.++|||||||||++|+++|++|++ |+||+||||++                                          
T Consensus        12 ~p~e~~DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~------------------------------------------   49 (308)
T d1y0pa2          12 APHDTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEP------------------------------------------   49 (308)
T ss_dssp             CCSEECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS------------------------------------------
T ss_pred             CCCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCC------------------------------------------
Confidence            34568999999999999999999999 99999999997                                          


Q ss_pred             eecccccccCCccccCCChhhHhhCC--CCHHHHHHHhHhhhccccCCCC----CChhHHHHHHHHHHcCCCCCCCCCcC
Q 009873          128 RVLGGSSAINGGFYSRAREDFVKKAG--WDEELVKKAYEWVESKVVFPPE----LTPWQSVVEFGLLEAGILPYNGYSLE  201 (523)
Q Consensus       128 ~~lGG~s~~~~~~~~r~~~~~~~~~~--w~~~~~~~~~~~~~~~~~~~p~----~~~~~~~~~~~~~~~g~~~~~~~~~~  201 (523)
                       ..||+|.++.+.+.......+...+  ...+.....+........ .++    +........+++.+.|++ +..... 
T Consensus        50 -~~gG~s~~s~G~~~~~~~~~~~~~~~~d~~~~~~~d~~~~~~~~~-d~~lv~~~~~~~~~~i~~L~~~Gv~-~~~~~~-  125 (308)
T d1y0pa2          50 -VIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNIN-DPALVKVLSSHSKDSVDWMTAMGAD-LTDVGM-  125 (308)
T ss_dssp             -SSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCS-CHHHHHHHHHHHHHHHHHHHHTTCC-CCEEEC-
T ss_pred             -CCCCcceecCCCCccccchhhhhhhccchHHHHHHHHHhhhhhcc-chHHHHHHHHhhhHHHHHHHHcCCC-cccccc-
Confidence             4577777776665554333322211  122222211111111100 000    011123345667777763 211100 


Q ss_pred             CCCcceeeeeEEcCCCeee--chHh-hhhhCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEe
Q 009873          202 HIEGTKIGGTAFDQCGKRH--TSAD-LLEAGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYL  278 (523)
Q Consensus       202 ~~~~~~~~~~~~~~~g~~~--~~~~-~l~~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a  278 (523)
                       ..+...............  .... ++..+.+.|++|+++++|++|+.++++     +|+||.+.+.++.   .+.+++
T Consensus       126 -~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~gv~i~~~~~v~~li~~~~G-----~V~Gv~~~~~~~~---~~~i~A  196 (308)
T d1y0pa2         126 -MGGASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKG-----TVKGILVKGMYKG---YYWVKA  196 (308)
T ss_dssp             -CTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCEEESSEEEEEEEECTTS-----CEEEEEEEETTTE---EEEEEC
T ss_pred             -ccccccccccccccccchHHHHHHHHHHHHHhccceEEEeeccchhhhhccc-----ccccccccccccc---eeEeec
Confidence             011111111111111111  1111 233566789999999999999998765     8999999987676   677886


Q ss_pred             cCCCCCCCCCcEEEecCCchhHHHHH
Q 009873          279 NKPGNSSTWGDVILSAGALGSPQLLL  304 (523)
Q Consensus       279 ~~~~~~~~~~~VILaaGa~~tp~lLl  304 (523)
                               |.||||||+|....-|+
T Consensus       197 ---------k~VVlAtGG~~~n~~~~  213 (308)
T d1y0pa2         197 ---------DAVILATGGFAKNNERV  213 (308)
T ss_dssp             ---------SEEEECCCCCTTCHHHH
T ss_pred             ---------CeEEEccCcccccHHHH
Confidence                     99999999998654443

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=99.75  E-value=1.5e-18  Score=169.67  Aligned_cols=193  Identities=17%  Similarity=0.176  Sum_probs=112.7

Q ss_pred             ccCCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCCCCCCccccchhccccCCCCCCccccccCcCCCceeecCc
Q 009873           49 VAGKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEYTSVAQSFISTDGVQNHRG  127 (523)
Q Consensus        49 ~~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  127 (523)
                      ..++++||||||||++|+++|++|++ |+||+||||++                                          
T Consensus        19 ~~~et~DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~------------------------------------------   56 (322)
T d1d4ca2          19 GVKETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEP------------------------------------------   56 (322)
T ss_dssp             CCCEECSEEEECSSHHHHHHHHHHHTTTCCEEEECSSS------------------------------------------
T ss_pred             CCCCcceEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC------------------------------------------
Confidence            35678999999999999999999999 99999999987                                          


Q ss_pred             eecccccccCCccccCCChhhHhhCC--CCHHHHHHHhHhhhccccCCC---CCChhHHHHHHHHHHcCCCCCCCCCcCC
Q 009873          128 RVLGGSSAINGGFYSRAREDFVKKAG--WDEELVKKAYEWVESKVVFPP---ELTPWQSVVEFGLLEAGILPYNGYSLEH  202 (523)
Q Consensus       128 ~~lGG~s~~~~~~~~r~~~~~~~~~~--w~~~~~~~~~~~~~~~~~~~p---~~~~~~~~~~~~~~~~g~~~~~~~~~~~  202 (523)
                       ..||+|.++.+.........+...+  .+.+...+.+.+....+....   .+........+++.+.|++ +.....  
T Consensus        57 -~~gG~s~~s~Ggi~~~~~~~~~~~~~~d~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~i~~l~~~Gv~-~~~~~~--  132 (322)
T d1d4ca2          57 -IPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGRNINDPELVKVLANNSSDSIDWLTSMGAD-MTDVGR--  132 (322)
T ss_dssp             -SSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSCHHHHHHHHHTHHHHHHHHHHTTCC-CCEEEC--
T ss_pred             -CCCCcccccCCcccccCchhhhhcccCCCHHHHHHHHHhccccccCHHHhhhhhhhhhhhhhhhhhhccc-cccccc--
Confidence             4466666666554443333222211  112222221111111100000   0011123345667777863 211100  


Q ss_pred             CCcceeeeeEEcCCCeee--chH-hhhhhCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEec
Q 009873          203 IEGTKIGGTAFDQCGKRH--TSA-DLLEAGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLN  279 (523)
Q Consensus       203 ~~~~~~~~~~~~~~g~~~--~~~-~~l~~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~  279 (523)
                      ..+...........+...  ... .++..+.+.|++|+++++|++|+.++++     +|+||.+.+.+++   .+.+.+ 
T Consensus       133 ~~g~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~gv~i~~~t~v~~li~d~~G-----~V~Gv~~~~~~~~---~~~i~A-  203 (322)
T d1d4ca2         133 MGGASVNRSHRPTGGAGVGAHVAQVLWDNAVKRGTDIRLNSRVVRILEDASG-----KVTGVLVKGEYTG---YYVIKA-  203 (322)
T ss_dssp             CTTCSSCCEEESTTTCCSHHHHHHHHHHHHHHTTCEEETTEEEEEEECCSSS-----CCCEEEEEETTTE---EEEEEC-
T ss_pred             ccccccccccccccccchhHHHHHHHHHHHHhcCceEEEeeecccccccccc-----cccceEEEeeccc---EEEEeC-
Confidence            011111111111111111  111 2233566789999999999999997665     8999999986666   667776 


Q ss_pred             CCCCCCCCCcEEEecCCchhHHHHH
Q 009873          280 KPGNSSTWGDVILSAGALGSPQLLL  304 (523)
Q Consensus       280 ~~~~~~~~~~VILaaGa~~tp~lLl  304 (523)
                              |.||||||+|+...-|+
T Consensus       204 --------k~VIlAtGG~~~n~~~~  220 (322)
T d1d4ca2         204 --------DAVVIAAGGFAKNNERV  220 (322)
T ss_dssp             --------SEEEECCCCCTTCHHHH
T ss_pred             --------CeEEEcCCCcccCHHHH
Confidence                    99999999997654444

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.74  E-value=2.7e-18  Score=167.52  Aligned_cols=193  Identities=18%  Similarity=0.181  Sum_probs=113.2

Q ss_pred             cccCCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCCCCCCccccchhccccCCCCCCccccccCcCCCceeecC
Q 009873           48 EVAGKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPFGNPLVTDKRFFGFSLLQTDEYTSVAQSFISTDGVQNHR  126 (523)
Q Consensus        48 ~~~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (523)
                      ..+.+++||||||||++|+++|++|++ |+||+||||++                                         
T Consensus        14 ~~~~e~~DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~-----------------------------------------   52 (317)
T d1qo8a2          14 AGPSETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAP-----------------------------------------   52 (317)
T ss_dssp             TCCSEEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSS-----------------------------------------
T ss_pred             CCCCCccCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC-----------------------------------------
Confidence            345678999999999999999999999 99999999997                                         


Q ss_pred             ceecccccccCCccccCCChhhHhhCCCCHHHHHHHhHhhhccccCCCC------CChhHHHHHHHHHHcCCCCCCCCCc
Q 009873          127 GRVLGGSSAINGGFYSRAREDFVKKAGWDEELVKKAYEWVESKVVFPPE------LTPWQSVVEFGLLEAGILPYNGYSL  200 (523)
Q Consensus       127 g~~lGG~s~~~~~~~~r~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~p~------~~~~~~~~~~~~~~~g~~~~~~~~~  200 (523)
                        ..||+|.++.+.+.......+...+.. +..+.+++...+.-....+      +........+++.+.|++ +.....
T Consensus        53 --~~gG~S~~a~Ggi~a~~~~~~~~~g~~-d~~~~~~~d~~~~~~~~~d~~lv~~~~~~a~~~i~~l~~~Gv~-~~~~~~  128 (317)
T d1qo8a2          53 --FSGGNSMISAGGMNAVGTKQQTAHGVE-DKVEWFIEDAMKGGRQQNDIKLVTILAEQSADGVQWLESLGAN-LDDLKR  128 (317)
T ss_dssp             --SSCTTGGGCCSCEECSSCHHHHHTTCC-CCHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHTTCC-CCEEEC
T ss_pred             --CCCCchhhcCCCcccccchhhhhcccC-CcHHHHHHHHHHhhccccchhHHHHHHhhhhhhhhhHHHhhhc-cccccc
Confidence              346666666655444333222221111 1111122211111111100      011123345667777763 211000


Q ss_pred             CCCCcceeeeeEEcCCCeeec--hHhhh-hhCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEE
Q 009873          201 EHIEGTKIGGTAFDQCGKRHT--SADLL-EAGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAY  277 (523)
Q Consensus       201 ~~~~~~~~~~~~~~~~g~~~~--~~~~l-~~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~  277 (523)
                        ..+...........+....  ....| ..+++.|+++++++.|++|+.++++     +|+||.+.+.+++   .+.+.
T Consensus       129 --~gg~~~~r~~~~~~g~~~g~~i~~~L~~~~~~~g~~i~~~~~v~~l~~~~~g-----~V~Gv~~~~~~~~---~~~i~  198 (317)
T d1qo8a2         129 --SGGARVDRTHRPHGGKSSGPEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDDH-----SVVGAVVHGKHTG---YYMIG  198 (317)
T ss_dssp             --CTTCSSCCEEECSSSSCHHHHHHHHHHHHHHHTTCCEECSEEEEEEEECTTS-----BEEEEEEEETTTE---EEEEE
T ss_pred             --ccCcccccccccccccccchhhhHHHHHHhhhccceeeeccchhheeecccc-----cceeeEeecccce---EEEEe
Confidence              0011111111111221111  11223 3567889999999999999987665     9999999987777   77788


Q ss_pred             ecCCCCCCCCCcEEEecCCchhHHHHH
Q 009873          278 LNKPGNSSTWGDVILSAGALGSPQLLL  304 (523)
Q Consensus       278 a~~~~~~~~~~~VILaaGa~~tp~lLl  304 (523)
                      +         |.||||||+|+...-|+
T Consensus       199 A---------k~VVlAtGG~~~n~~~~  216 (317)
T d1qo8a2         199 A---------KSVVLATGGYGMNKEMI  216 (317)
T ss_dssp             E---------EEEEECCCCCTTCHHHH
T ss_pred             c---------cceEEeccccccCHHHH
Confidence            7         99999999997554444

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=99.61  E-value=2.4e-15  Score=145.67  Aligned_cols=54  Identities=13%  Similarity=0.265  Sum_probs=46.3

Q ss_pred             hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEe-cCCCCCceeEEEecCCCCCCCCCcEEEecCCchh
Q 009873          228 AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIK-SDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGS  299 (523)
Q Consensus       228 ~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~-~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~t  299 (523)
                      ..++++++|++++.|++|+.+++      ++.||...+ .+|+   .+.+.+         |.||||+|+++.
T Consensus       144 ~~~~~~v~i~~~~~v~~Ll~d~g------~v~Gvv~~~~~~g~---~~~~~A---------kaVILATGG~g~  198 (311)
T d1kf6a2         144 SLQFPQIQRFDEHFVLDILVDDG------HVRGLVAMNMMEGT---LVQIRA---------NAVVMATGGAGR  198 (311)
T ss_dssp             HTTCTTEEEEETEEEEEEEEETT------EEEEEEEEETTTTE---EEEEEC---------SCEEECCCCCGG
T ss_pred             HHccCcceeEeeeEeeeeEecCC------cceeEEEEEcCCCc---EEEEEC---------CEEEEcCCCccc
Confidence            67778999999999999999987      999998877 4576   677776         999999999863

>d1ju2a2 d.16.1.1 (A:294-463) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GMC oxidoreductases
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=99.58  E-value=9e-15  Score=126.80  Aligned_cols=133  Identities=26%  Similarity=0.431  Sum_probs=105.5

Q ss_pred             ccccCcCceEEEecCCCCCCCCCcceeee--------------ee-cCCC---------CCCcccEEeeecCcCcceEEE
Q 009873          331 GMQDNPCIAKLVDTMPQKRLPEPPEVVAG--------------VL-PISS---------NASRMPIAAKLAFPISKGKLE  386 (523)
Q Consensus       331 ~l~dh~~~~~~~~~~~~~~~~~~~~~~g~--------------~~-~~~~---------~~~~~~~~~~~~~p~s~g~v~  386 (523)
                      +|+|||...+. ...+.+......|..|+              ++ +...         +.....+...++.|.|||+|+
T Consensus         1 ~l~DnP~n~i~-~~~~~P~~~s~~q~~G~~~~~~~~~~p~lq~~~~p~~~~~~~~~p~~~~~~~~i~~~l~~P~SrG~v~   79 (170)
T d1ju2a2           1 FLHDNPRNFIN-ILPPNPIEPTIVTVLGISNDFYQCSFSSLPFTTPPFGFFPSSSYPLPNSTFAHFASKVAGPLSYGSLT   79 (170)
T ss_dssp             EEECCEEEEEE-ECCSSCCCCCCCCEEEECSSEEEEEEEECCCSSCCBTTBSSSCCCCCSSCEEEEEEEESSCSCCEEEE
T ss_pred             CCccCCCccee-cCCCCCcccchhhEEEEecCchhhcCCCcccccCcccccccCCCCCCCCCeeEeecccCCccccceEE
Confidence            47899988877 45577777777776654              11 1110         011234667788999999999


Q ss_pred             ec-CCCCCCCCeeecCCCCChhhHHHHHHHHHHHHHHhcccccccccCCCCCCC------------CCCCHHHHHHHHHc
Q 009873          387 LD-STDPRQNPSIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSFLGIKPQEK------------LMSNSDELRKLCKN  453 (523)
Q Consensus       387 l~-~~d~~~~p~i~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~  453 (523)
                      |. ++|+.+.|.|++||+.++.|++.+.++++.+++++++..++.+...+..|.            ..++++++++|+++
T Consensus        80 L~~S~dp~~~P~i~~nyl~~~~D~~~~v~~~~~~r~i~~~~~~~~~~~~e~~p~~~~~~~~~p~p~~~~dde~l~~~iR~  159 (170)
T d1ju2a2          80 LKSSSNVRVSPNVKFNYYSNLTDLSHCVSGMKKIGELLSTDALKPYKVEDLPGVEGFNILGIPLPKDQTDDAAFETFCRE  159 (170)
T ss_dssp             CSCSSCTTSCCEECCCTTCSHHHHHHHHHHHHHHHHHHTSGGGGGGCSSCCSTTCSCCBSSSCCCSCTTCHHHHHHHHHH
T ss_pred             ecCCCCcccCcccCcccccCchhHHHHHHHHHHHHHHHcChhhhhccccccccccccccccCCCccCCCCHHHHHHHHHh
Confidence            96 789999999999999999999999999999999999999998876654322            34588999999999


Q ss_pred             ccccccccccc
Q 009873          454 NVRTFYHYHGG  464 (523)
Q Consensus       454 ~~~~~~H~~Gt  464 (523)
                      ...+.||++|+
T Consensus       160 ~~~T~yHyhgg  170 (170)
T d1ju2a2         160 SVASYWHYHGG  170 (170)
T ss_dssp             HCEECSCCEES
T ss_pred             cCEeccCCCCc
Confidence            99999999985

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=99.58  E-value=3.7e-15  Score=146.02  Aligned_cols=53  Identities=9%  Similarity=0.142  Sum_probs=46.3

Q ss_pred             hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEe-cCCCCCceeEEEecCCCCCCCCCcEEEecCCch
Q 009873          228 AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIK-SDGSSNHMHEAYLNKPGNSSTWGDVILSAGALG  298 (523)
Q Consensus       228 ~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~-~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~  298 (523)
                      .+++.|++|++++.|++|+.+++      ++.|+.+.+ .+|+   ...+.+         |.||||+|+++
T Consensus       167 ~~~~~gv~i~~~~~~~~li~~~~------~v~g~~~~~~~~g~---~~~i~A---------k~VvlATGG~~  220 (336)
T d2bs2a2         167 ECLKLGVSIQDRKEAIALIHQDG------KCYGAVVRDLVTGD---IIAYVA---------KGTLIATGGYG  220 (336)
T ss_dssp             HHHHHTCEEECSEEEEEEEEETT------EEEEEEEEETTTCC---EEEEEC---------SEEEECCCCCG
T ss_pred             HHHhccccccceeeeeecccccc------cccceeEEeccCCc---EEEEec---------CeEEEeccccc
Confidence            56678999999999999999988      999998876 4577   777886         99999999986

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=99.54  E-value=5.7e-15  Score=138.36  Aligned_cols=54  Identities=17%  Similarity=0.258  Sum_probs=44.3

Q ss_pred             hhCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHH
Q 009873          227 EAGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQL  302 (523)
Q Consensus       227 ~~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~l  302 (523)
                      ..+++.|++|+++++|++|..+++      ++.+|...  +|+     ++++         +.||+|+|+...|++
T Consensus       118 ~~~~~~gv~i~~~~~v~~i~~~~~------~~~~v~~~--~g~-----~i~a---------~~vI~AtGg~S~p~~  171 (251)
T d2i0za1         118 TRLKDLGVKIRTNTPVETIEYENG------QTKAVILQ--TGE-----VLET---------NHVVIAVGGKSVPQT  171 (251)
T ss_dssp             HHHHHTTCEEECSCCEEEEEEETT------EEEEEEET--TCC-----EEEC---------SCEEECCCCSSSGGG
T ss_pred             HHHHHcCCcccCCcEEEEEEEECC------EEEEEEeC--CCC-----eEec---------CeEEEccCCcccccc
Confidence            356678999999999999999887      88888754  355     4676         999999999988863

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=99.52  E-value=2.9e-14  Score=137.63  Aligned_cols=60  Identities=20%  Similarity=0.239  Sum_probs=45.2

Q ss_pred             hCCCCCeEEEeccEEEEEEEcCCCC-CCCceeeEEEEEecC-CCCCceeEEEecCCCCCCCCCcEEEecCCchh
Q 009873          228 AGNPKNLVVLLNATVNNIIFSNNGK-ANESRAHGIRFIKSD-GSSNHMHEAYLNKPGNSSTWGDVILSAGALGS  299 (523)
Q Consensus       228 ~~~~~g~~i~~~~~V~~l~~~~~g~-~~~~~v~GV~~~~~~-g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~t  299 (523)
                      ..++.+++++.++.+++|+.+++.. ....+|+||.+.+.. ++   .+.+.+         |.||||+|+++.
T Consensus       147 ~~~~~~v~~~~~~~~~~Li~~~~~~~~~~~rv~Gv~~~~~~~g~---~~~~~a---------k~VilAtGG~~~  208 (305)
T d1chua2         147 ALNHPNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNKET---VETCHA---------KAVVLATGGASK  208 (305)
T ss_dssp             HHHCTTEEEECSEEEEEEEEGGGTTCCSSCBEEEEEEEETTTTE---EEEEEC---------SEEEECCCCCGG
T ss_pred             HHhccCcceeceeEEEEEEEEcCcccccCceEEEEEEEeCCCCc---EEEEee---------cceEEeeecccc
Confidence            4567899999999999999986521 012279999987743 44   555654         999999999863

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=99.48  E-value=5.9e-14  Score=133.62  Aligned_cols=34  Identities=35%  Similarity=0.526  Sum_probs=32.4

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .+|||||||||++|+++|++|++ |++|+||||..
T Consensus         2 ~~yDvvIIGaGi~Gls~A~~La~~G~~V~viE~~~   36 (281)
T d2gf3a1           2 THFDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFD   36 (281)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            47999999999999999999999 99999999986

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=99.47  E-value=4.9e-15  Score=140.80  Aligned_cols=58  Identities=16%  Similarity=0.170  Sum_probs=45.6

Q ss_pred             hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHhhC
Q 009873          228 AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLSG  307 (523)
Q Consensus       228 ~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~SG  307 (523)
                      .+++.|++|+++++|++|..++       ++++|++.  +|+      +.+         +.||+|||+ +|+.|+...|
T Consensus       160 ~~~~~Gv~i~~~~~V~~i~~~~-------~~~~V~t~--~g~------i~a---------~~vV~AaG~-~s~~l~~~~G  214 (276)
T d1ryia1         160 AAKMLGAEIFEHTPVLHVERDG-------EALFIKTP--SGD------VWA---------NHVVVASGV-WSGMFFKQLG  214 (276)
T ss_dssp             HHHHTTCEEETTCCCCEEECSS-------SSEEEEET--TEE------EEE---------EEEEECCGG-GTHHHHHHTT
T ss_pred             HHHHcCCEEecceEEEeEEeec-------ceEEEecC--CeE------EEc---------CEEEECCCc-cHHHHHhhcC
Confidence            5678899999999999998654       45677652  243      787         999999998 4889888887


Q ss_pred             CCC
Q 009873          308 IGP  310 (523)
Q Consensus       308 ig~  310 (523)
                      +..
T Consensus       215 ~~~  217 (276)
T d1ryia1         215 LNN  217 (276)
T ss_dssp             CCC
T ss_pred             CCc
Confidence            754

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=99.45  E-value=6.3e-14  Score=131.41  Aligned_cols=36  Identities=28%  Similarity=0.424  Sum_probs=33.4

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGS   86 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~   86 (523)
                      .+.|||||||||++|+++|++|++ |++|+||||++.
T Consensus         2 ~~~~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~   38 (253)
T d2gqfa1           2 SQYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKK   38 (253)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            467999999999999999999999 999999999973

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=99.43  E-value=3.7e-14  Score=136.77  Aligned_cols=58  Identities=21%  Similarity=0.227  Sum_probs=48.4

Q ss_pred             hhCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHHhh
Q 009873          227 EAGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLLLS  306 (523)
Q Consensus       227 ~~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl~S  306 (523)
                      ..+++.|++|+++++|++|..+++      ++++|++.  +|+      +.|         +.||+|||++ |++|+...
T Consensus       156 ~~a~~~gv~i~~~~~V~~i~~~~~------~v~~V~T~--~g~------i~a---------~~VV~aaG~~-s~~l~~~~  211 (305)
T d1pj5a2         156 KRTESAGVTYRGSTTVTGIEQSGG------RVTGVQTA--DGV------IPA---------DIVVSCAGFW-GAKIGAMI  211 (305)
T ss_dssp             HHHHHTTCEEECSCCEEEEEEETT------EEEEEEET--TEE------EEC---------SEEEECCGGG-HHHHHHTT
T ss_pred             hhhhcccccccCCceEEEEEEeCC------EEEEEecc--cee------EEC---------CEEEEecchh-HHHHHHHc
Confidence            366788999999999999999988      89999752  243      787         9999999985 89998876


Q ss_pred             CC
Q 009873          307 GI  308 (523)
Q Consensus       307 Gi  308 (523)
                      |+
T Consensus       212 g~  213 (305)
T d1pj5a2         212 GM  213 (305)
T ss_dssp             TC
T ss_pred             CC
Confidence            65

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=99.43  E-value=2.7e-13  Score=132.24  Aligned_cols=55  Identities=11%  Similarity=0.163  Sum_probs=43.7

Q ss_pred             hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEe-cCCCCCceeEEEecCCCCCCCCCcEEEecCCchh
Q 009873          228 AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIK-SDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGS  299 (523)
Q Consensus       228 ~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~-~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~t  299 (523)
                      .+++.+++++.++.+++++.++++     ++.|+...+ .+|+   ...+.+         +.||||+|+++.
T Consensus       152 ~~~~~~v~~~~~~~~~~l~~~~~~-----~~~g~~~~~~~~g~---~~~~~a---------~~vIlAtGG~~~  207 (330)
T d1neka2         152 QNLKNHTTIFSEWYALDLVKNQDG-----AVVGCTALCIETGE---VVYFKA---------RATVLATGGAGR  207 (330)
T ss_dssp             HHHHTTCEEECSEEEEEEEECTTS-----CEEEEEEEETTTCC---EEEEEE---------SCEEECCCCCGG
T ss_pred             HHHhcCCeEEEEEEEEEeeeeccc-----cceeeeeEEccCCc---EEEEec---------cEEEEcCCCccc
Confidence            556789999999999999987664     677766554 4577   777877         999999999864

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.37  E-value=8.7e-13  Score=129.83  Aligned_cols=38  Identities=29%  Similarity=0.491  Sum_probs=32.9

Q ss_pred             ccCCcccEEEECCCCchHHHHhhhhc-----cCeeEEEecCCC
Q 009873           49 VAGKSFDYIVVGGGTTGCPLAATLSD-----NFSVLLVERGGS   86 (523)
Q Consensus        49 ~~~~~~DvIIVGsG~aG~~~A~~Lae-----g~~VlvlE~G~~   86 (523)
                      .+..++||||||||++|++||++|++     |++|+||||++.
T Consensus        17 ~e~~e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~   59 (356)
T d1jnra2          17 TEVVETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAV   59 (356)
T ss_dssp             EEEEECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCT
T ss_pred             ceEEecCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCCC
Confidence            34457999999999999999999873     799999999873

>d1cf3a2 d.16.1.1 (A:325-520) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GMC oxidoreductases
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=99.33  E-value=8.7e-13  Score=117.65  Aligned_cols=94  Identities=16%  Similarity=0.228  Sum_probs=82.3

Q ss_pred             cEEeeecCcCcceEEEecCCCCC-CCCeeecCCCCChhhHHHHHHHHHHHHHHhcccccccccCCCCCCC----CCCCHH
Q 009873          371 PIAAKLAFPISKGKLELDSTDPR-QNPSIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSFLGIKPQEK----LMSNSD  445 (523)
Q Consensus       371 ~~~~~~~~p~s~g~v~l~~~d~~-~~p~i~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~----~~~~~~  445 (523)
                      ++...+++|.|||+|+|.++||. +.|.|++||+.+|.|++.+.++++.++++++...++.+...+..|.    ...+++
T Consensus        98 ~~~~~~l~P~SrG~V~l~S~dP~~d~P~I~~nyls~~~D~~~~~~~~r~~~~i~~~~~~~~~~~~e~~Pg~~~~~d~~~~  177 (196)
T d1cf3a2          98 SFDVWDLLPFTRGYVHILDKDPYLHHFAYDPQYFLNELDLLGQAAATQLARNISNSGAMQTYFAGETIPGDNLAYDADLS  177 (196)
T ss_dssp             EEEEEESSCCCCBEEEESSSCGGGCCEEEECCTTCSHHHHHHHHHHHHHHHHHHTSGGGGGTEEEEEESGGGSCTTCCHH
T ss_pred             eeeeeecCCCcceEEEeeCCCcccCCCccCHhhcCCchHHHHHHHHHHHHHHHHHhHHHHhccccccCCCcCCCCchhHH
Confidence            35566789999999999999996 6899999999999999999999999999999999988876555442    234678


Q ss_pred             HHHHHHHcccccccccccc
Q 009873          446 ELRKLCKNNVRTFYHYHGG  464 (523)
Q Consensus       446 ~~~~~~~~~~~~~~H~~Gt  464 (523)
                      +|++|+++...+.||++||
T Consensus       178 ~~~~~ir~~~~t~~Hp~GT  196 (196)
T d1cf3a2         178 AWTEYIPYHFRPNYHGVGT  196 (196)
T ss_dssp             HHHHHGGGSCEECSCCBCT
T ss_pred             HHHHHHHhcCeeccccCCC
Confidence            8999999999999999998

>d1gpea2 d.16.1.1 (A:329-524) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GMC oxidoreductases
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=99.32  E-value=8.2e-13  Score=117.84  Aligned_cols=95  Identities=14%  Similarity=0.170  Sum_probs=83.0

Q ss_pred             ccEEeeecCcCcceEEEecCCCCCCCC-eeecCCCCChhhHHHHHHHHHHHHHHhcccccccccCCCCCCC----CCCCH
Q 009873          370 MPIAAKLAFPISKGKLELDSTDPRQNP-SIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSFLGIKPQEK----LMSNS  444 (523)
Q Consensus       370 ~~~~~~~~~p~s~g~v~l~~~d~~~~p-~i~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~----~~~~~  444 (523)
                      +++...+++|.|||+|+|.++||...| .|++||+.+|.|++.+.++++.+++++++..++.+...+..|.    ...++
T Consensus        97 ~~~~~~~l~P~SrG~V~l~S~dP~~~pp~I~pnyl~~~~D~~~~~~~~r~~~~i~~t~~l~~~~~~e~~Pg~~~~~~~sd  176 (196)
T d1gpea2          97 INFDLWDLIPFTRGSVHILSSDPYLWQFANDPKFFLNEFDLLGQAAASKLARDLTSQGAMKEYFAGETLPGYNLVQNATL  176 (196)
T ss_dssp             EEEEEEESSCCCCBEEEESSSCGGGTCEEEECCTTSSHHHHHHHHHHHHHHHHHHTSTTHHHHEEEEEESGGGSCTTCCH
T ss_pred             eEEeeeccCCccceEEEeeCCCchhcccccchhhcCCchHHHHHHHHHHHHHHHHhhHHHHhhcccccCCCcccCCCCCH
Confidence            446677889999999999999987755 8999999999999999999999999999999888776555443    22478


Q ss_pred             HHHHHHHHcccccccccccc
Q 009873          445 DELRKLCKNNVRTFYHYHGG  464 (523)
Q Consensus       445 ~~~~~~~~~~~~~~~H~~Gt  464 (523)
                      ++|++|+++...+.||++||
T Consensus       177 e~~~~~ir~~~~t~~Hp~GT  196 (196)
T d1gpea2         177 SQWSDYVLQNFRPNWHAVSS  196 (196)
T ss_dssp             HHHHHHHHHSCEECSCCBCT
T ss_pred             HHHHHHHHhcCeecccCCCC
Confidence            99999999999999999998

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.22  E-value=4.4e-12  Score=118.02  Aligned_cols=40  Identities=33%  Similarity=0.467  Sum_probs=36.4

Q ss_pred             cCCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCCC
Q 009873           50 AGKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPFG   89 (523)
Q Consensus        50 ~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~~   89 (523)
                      ++++|||||||||++|+++|++|++ |+||+||||++..++
T Consensus         2 m~~~yDviViGaG~~Gl~~A~~La~~G~~V~vlE~~~~~GG   42 (297)
T d2bcgg1           2 IDTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGG   42 (297)
T ss_dssp             CCCBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCG
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCc
Confidence            5679999999999999999999999 999999999976543

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=99.04  E-value=3.7e-10  Score=101.73  Aligned_cols=32  Identities=25%  Similarity=0.450  Sum_probs=30.6

Q ss_pred             cccEEEECCCCchHHHHhhhhc-cCeeEEEecC
Q 009873           53 SFDYIVVGGGTTGCPLAATLSD-NFSVLLVERG   84 (523)
Q Consensus        53 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G   84 (523)
                      .|||||||||.||+.||+.+|+ |+||+|||+.
T Consensus         2 ~YDVIVIGgG~AG~eAA~~aAR~G~ktllit~~   34 (230)
T d2cula1           2 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQS   34 (230)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCcEEEEEec
Confidence            6999999999999999999999 9999999975

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=98.98  E-value=1e-09  Score=104.48  Aligned_cols=55  Identities=18%  Similarity=0.183  Sum_probs=41.2

Q ss_pred             CCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEecCCCCCceeEEEecCCCCCCCCCcEEEecCCchhHHHHH
Q 009873          230 NPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKSDGSSNHMHEAYLNKPGNSSTWGDVILSAGALGSPQLLL  304 (523)
Q Consensus       230 ~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~~g~~~~~~~i~a~~~~~~~~~~~VILaaGa~~tp~lLl  304 (523)
                      ++.|++|+++++|++|..+++      ++. |++.+ +|+   ..++.+         +.||+|+++..+++||.
T Consensus       230 ~~~g~~i~~~~~V~~I~~~~~------~~~-v~~~~-~~~---~~~~~a---------d~VV~a~p~~~~~~Ll~  284 (347)
T d2ivda1         230 ASLGDAAHVGARVEGLAREDG------GWR-LIIEE-HGR---RAELSV---------AQVVLAAPAHATAKLLR  284 (347)
T ss_dssp             HHHGGGEESSEEEEEEECC--------CCE-EEEEE-TTE---EEEEEC---------SEEEECSCHHHHHHHHT
T ss_pred             HHhhcccccCCEEEEEEEeCC------eEE-EEEEc-CCe---EEEEEC---------CEEEECCCHHHHHHhcc
Confidence            345789999999999998877      444 44444 455   566776         99999999999999865

>d1kdga2 d.16.1.1 (A:513-693) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), substrate-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GMC oxidoreductases
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), substrate-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=98.92  E-value=7.6e-10  Score=97.23  Aligned_cols=88  Identities=11%  Similarity=0.125  Sum_probs=73.8

Q ss_pred             cEEeeecC-cCcceEEEecCCCCCCCCeeecCCCCChhhHHHHHHHHHHHHHHhcccccccccCCCCCCCCCCCHHHHHH
Q 009873          371 PIAAKLAF-PISKGKLELDSTDPRQNPSIKFNYLAKEKDLHECVKMVQLLDKVTKSQSVSSFLGIKPQEKLMSNSDELRK  449 (523)
Q Consensus       371 ~~~~~~~~-p~s~g~v~l~~~d~~~~p~i~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  449 (523)
                      ++...+.. |.|||+|+|.+  +.+.|.|+++|+.+|.|++.+.++++.++++++...+..+.    .|....+++++.+
T Consensus        93 ~~~~~~l~~P~SRG~V~L~S--p~~~P~I~pnyLs~p~D~~~lv~~i~~~r~~~~~~p~~~~~----~p~~~~t~~~~~~  166 (181)
T d1kdga2          93 TITVYLSTGIQSRGRIGIDA--ALRGTVLTPPWLVNPVDKTVLLQALHDVVSNIGSIPGLTMI----TPDVTQTLEEYVD  166 (181)
T ss_dssp             EEEEEECTTCCCCBEEEECT--TCCEEEEECCTTCSHHHHHHHHHHHHHHTTTGGGSTTCEEE----ESCTTSCHHHHHH
T ss_pred             EEEEeeccCCCCCCeEEeCC--CCCCCcccccccCCHHHHHHHHHHHHHHHHHHcCCCCCccc----cCCCCCCHHHHHH
Confidence            34455554 99999999976  45779999999999999999999999999999987765543    2445578899999


Q ss_pred             HHHcccccccccccc
Q 009873          450 LCKNNVRTFYHYHGG  464 (523)
Q Consensus       450 ~~~~~~~~~~H~~Gt  464 (523)
                      +++....+.+|+.||
T Consensus       167 ~~~~~~~~~~H~vGT  181 (181)
T d1kdga2         167 AYDPATMNSNHWVSS  181 (181)
T ss_dssp             HSCGGGGCCSCCBCT
T ss_pred             HHHHhCCcccCCCCC
Confidence            999988999999997

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=98.87  E-value=2.3e-09  Score=101.84  Aligned_cols=35  Identities=31%  Similarity=0.440  Sum_probs=33.0

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .+++||||||||++|+++|++|.+ |.+|+|+||++
T Consensus         5 ~~~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~   40 (298)
T d1w4xa1           5 PEEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAG   40 (298)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCCCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCC
Confidence            368999999999999999999999 99999999997

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=98.77  E-value=1.3e-08  Score=95.72  Aligned_cols=34  Identities=32%  Similarity=0.503  Sum_probs=31.9

Q ss_pred             CcccEEEECCCCchHHHHhhhhc--cCeeEEEecCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD--NFSVLLVERGG   85 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae--g~~VlvlE~G~   85 (523)
                      .++||||||||++|+++|++|++  |++|+||||.+
T Consensus        32 ~e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~   67 (278)
T d1rp0a1          32 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSV   67 (278)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSS
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCC
Confidence            58999999999999999999975  89999999986

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.59  E-value=1e-08  Score=100.81  Aligned_cols=40  Identities=28%  Similarity=0.395  Sum_probs=34.6

Q ss_pred             ccCCcccEEEECCCCchHHHHhhhh-------ccCeeEEEecCCCCC
Q 009873           49 VAGKSFDYIVVGGGTTGCPLAATLS-------DNFSVLLVERGGSPF   88 (523)
Q Consensus        49 ~~~~~~DvIIVGsG~aG~~~A~~La-------eg~~VlvlE~G~~~~   88 (523)
                      .+..+|||||||||++|+++|++||       +|++|+||||+..+.
T Consensus        28 ~~~~e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~pG   74 (380)
T d2gmha1          28 RFAEEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIG   74 (380)
T ss_dssp             CCEEECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTT
T ss_pred             cccccCCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCCC
Confidence            3455799999999999999999998       379999999997553

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.46  E-value=1.3e-08  Score=92.70  Aligned_cols=36  Identities=33%  Similarity=0.600  Sum_probs=33.6

Q ss_pred             cCCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           50 AGKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        50 ~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      +.++|||||||||++|+++|..|++ |+||+|||+.+
T Consensus         2 m~~~yDviVIG~GpAGl~aA~~aa~~G~kV~lie~~~   38 (233)
T d1v59a1           2 INKSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRG   38 (233)
T ss_dssp             EEEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CCcccCEEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence            4578999999999999999999999 99999999875

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.45  E-value=3.8e-08  Score=89.21  Aligned_cols=34  Identities=29%  Similarity=0.488  Sum_probs=32.5

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      ++|||||||||++|+++|..|++ |+||+|||+..
T Consensus         2 ~kYDviIIGgGpAGl~aA~~aar~G~~V~viE~~~   36 (229)
T d3lada1           2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYK   36 (229)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCB
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEeccc
Confidence            68999999999999999999999 99999999975

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.44  E-value=2.8e-08  Score=89.80  Aligned_cols=34  Identities=26%  Similarity=0.536  Sum_probs=32.5

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      ++|||||||||++|+.+|..|++ |+||+|||++.
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~   36 (221)
T d1dxla1           2 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRG   36 (221)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence            57999999999999999999999 99999999986

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.42  E-value=4.2e-08  Score=88.41  Aligned_cols=34  Identities=29%  Similarity=0.513  Sum_probs=32.2

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      ++|||||||||++|+.+|.+|++ |+||+|||++.
T Consensus         1 k~yDvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~~   35 (217)
T d1gesa1           1 KHYDYIAIGGGSGGIASINRAAMYGQKCALIEAKE   35 (217)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEeccC
Confidence            57999999999999999999999 99999999975

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.39  E-value=5.5e-08  Score=92.30  Aligned_cols=36  Identities=39%  Similarity=0.610  Sum_probs=32.9

Q ss_pred             ccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCCC
Q 009873           54 FDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPFG   89 (523)
Q Consensus        54 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~~   89 (523)
                      |||||||||++||++|++|++ |++|+|+|+.+..++
T Consensus         2 ~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~iGG   38 (298)
T d1i8ta1           2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGG   38 (298)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSG
T ss_pred             ccEEEECCcHHHHHHHHHHHhCCCcEEEEECCCCccc
Confidence            799999999999999999999 899999999875543

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.36  E-value=7.9e-08  Score=87.69  Aligned_cols=35  Identities=26%  Similarity=0.489  Sum_probs=32.9

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGS   86 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~   86 (523)
                      .+|||||||||++|+++|.+|++ |+||+|||++..
T Consensus         2 ~dYDviVIG~GpaGl~aA~~aa~~G~kV~viE~~~~   37 (235)
T d1h6va1           2 YDFDLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTP   37 (235)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHGGGCCCEEEECCCCC
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence            47999999999999999999999 999999999873

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.34  E-value=1.2e-07  Score=91.40  Aligned_cols=32  Identities=38%  Similarity=0.549  Sum_probs=28.8

Q ss_pred             EEEECCCCchHHHHhhhhc-c--CeeEEEecCCCC
Q 009873           56 YIVVGGGTTGCPLAATLSD-N--FSVLLVERGGSP   87 (523)
Q Consensus        56 vIIVGsG~aG~~~A~~Lae-g--~~VlvlE~G~~~   87 (523)
                      |+|||||++|+++|..|++ +  .+|+|+||.+..
T Consensus         7 VaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~i   41 (335)
T d2gv8a1           7 IAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSP   41 (335)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSS
T ss_pred             EEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCC
Confidence            9999999999999999976 5  699999999744

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.34  E-value=6.8e-08  Score=87.87  Aligned_cols=35  Identities=34%  Similarity=0.576  Sum_probs=32.9

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      +.+|||||||||++|+++|..|++ |+||+|||+..
T Consensus         4 ~~dyDviIIG~GPaGlsaA~~aa~~G~~V~viE~~~   39 (229)
T d1ojta1           4 DAEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYK   39 (229)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            457999999999999999999999 99999999976

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=1.7e-07  Score=90.38  Aligned_cols=39  Identities=28%  Similarity=0.392  Sum_probs=34.7

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPFG   89 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~~   89 (523)
                      .++.+|||||||.+|++||++|++ |++|+|||+.+..++
T Consensus         3 ~~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r~GG   42 (449)
T d2dw4a2           3 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGG   42 (449)
T ss_dssp             SCCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBT
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCcc
Confidence            466789999999999999999999 999999999875543

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.26  E-value=1.6e-07  Score=84.76  Aligned_cols=34  Identities=29%  Similarity=0.431  Sum_probs=32.2

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .+||+||||||++|+++|..|++ |+||+||||+.
T Consensus         2 ~~~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~   36 (223)
T d1ebda1           2 IETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGN   36 (223)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCEEEEEecCC
Confidence            47999999999999999999999 99999999986

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.25  E-value=3.4e-07  Score=86.14  Aligned_cols=33  Identities=21%  Similarity=0.413  Sum_probs=31.3

Q ss_pred             cccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           53 SFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        53 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      ++||+|||||++|+++|..|++ |++|+||||.+
T Consensus         2 k~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~   35 (292)
T d1k0ia1           2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQT   35 (292)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            5799999999999999999999 99999999975

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=1.9e-07  Score=84.14  Aligned_cols=33  Identities=33%  Similarity=0.604  Sum_probs=31.7

Q ss_pred             cccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           53 SFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        53 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      +||+||||||++|+.+|.+|++ |++|+|||++.
T Consensus         3 ~yDviIIG~GpaG~~aA~~aar~G~kV~vIEk~~   36 (221)
T d3grsa1           3 SYDYLVIGGGSGGLASARRAAELGARAAVVESHK   36 (221)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCEEEEEeccC
Confidence            7999999999999999999999 99999999975

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.22  E-value=1.5e-07  Score=87.20  Aligned_cols=32  Identities=41%  Similarity=0.661  Sum_probs=30.7

Q ss_pred             ccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           54 FDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        54 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      ||+||||||++|+.+|.+|++ |+||+|||++.
T Consensus         2 yDviVIG~G~aG~~aA~~aa~~G~~V~liE~~~   34 (259)
T d1onfa1           2 YDLIVIGGGSGGMAAARRAARHNAKVALVEKSR   34 (259)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            999999999999999999999 99999999873

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=98.22  E-value=3.2e-06  Score=77.82  Aligned_cols=31  Identities=35%  Similarity=0.440  Sum_probs=29.5

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .|+|||||++|+++|..|++ |++|+||||.+
T Consensus         6 kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~   37 (265)
T d2voua1           6 RIAVVGGSISGLTAALMLRDAGVDVDVYERSP   37 (265)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             cEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            59999999999999999999 99999999976

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=98.21  E-value=4.3e-07  Score=83.66  Aligned_cols=35  Identities=26%  Similarity=0.368  Sum_probs=32.0

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      ..+-+|||||||++|+++|++|++ |.+|+||||+.
T Consensus         4 ~~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~   39 (268)
T d1c0pa1           4 HSQKRVVVLGSGVIGLSSALILARKGYSVHILARDL   39 (268)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            445589999999999999999999 89999999986

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=2.3e-07  Score=89.68  Aligned_cols=35  Identities=37%  Similarity=0.589  Sum_probs=32.0

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPFG   89 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~~   89 (523)
                      ||||||||++|+++|++|++ |++|+||||.+..++
T Consensus         1 DViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~~~GG   36 (383)
T d2v5za1           1 DVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGG   36 (383)
T ss_dssp             SEEEECCBHHHHHHHHHHHHTTCCEEEEESSSSSBT
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcc
Confidence            89999999999999999999 999999999875543

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.20  E-value=2.5e-07  Score=80.75  Aligned_cols=32  Identities=22%  Similarity=0.407  Sum_probs=30.3

Q ss_pred             cccEEEECCCCchHHHHhhhhc-cCeeEEEecC
Q 009873           53 SFDYIVVGGGTTGCPLAATLSD-NFSVLLVERG   84 (523)
Q Consensus        53 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G   84 (523)
                      .|||||||||++|+.+|..|++ |++|+|||+.
T Consensus         1 ~yDViIIGgGpaGl~AAi~aar~G~~v~iie~~   33 (184)
T d1fl2a1           1 AYDVLIVGSGPAGAAAAIYSARKGIRTGLMGER   33 (184)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCeEEEEEEe
Confidence            4999999999999999999999 9999999975

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.19  E-value=2.7e-07  Score=83.20  Aligned_cols=35  Identities=23%  Similarity=0.385  Sum_probs=33.0

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      ..+||+||||||++|+.+|..|++ |++|+|||++.
T Consensus         3 ~~~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~~   38 (220)
T d1lvla1           3 TIQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQA   38 (220)
T ss_dssp             CEECSEEEECCSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            468999999999999999999999 99999999985

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.14  E-value=3.7e-07  Score=84.41  Aligned_cols=35  Identities=31%  Similarity=0.400  Sum_probs=31.2

Q ss_pred             ccEEEECCCCchHHHHhhhhc-cC-eeEEEecCCCCC
Q 009873           54 FDYIVVGGGTTGCPLAATLSD-NF-SVLLVERGGSPF   88 (523)
Q Consensus        54 ~DvIIVGsG~aG~~~A~~Lae-g~-~VlvlE~G~~~~   88 (523)
                      .||||||||++|+++|++|++ |. +|+||||.+..+
T Consensus         1 P~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~~~G   37 (347)
T d1b5qa1           1 PRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIG   37 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSB
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCCCcEEEEECCCCCC
Confidence            389999999999999999999 85 799999987543

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=98.11  E-value=3.4e-06  Score=69.16  Aligned_cols=32  Identities=34%  Similarity=0.535  Sum_probs=30.2

Q ss_pred             ccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           54 FDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        54 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      -.++|||||+.|+-+|..|++ |.+|.|+|+++
T Consensus        36 k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~   68 (133)
T d1q1ra2          36 NRLVVIGGGYIGLEVAATAIKANMHVTLLDTAA   68 (133)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CEEEEECCchHHHHHHHHHHhhCcceeeeeecc
Confidence            369999999999999999999 99999999987

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=98.04  E-value=8.7e-07  Score=84.78  Aligned_cols=37  Identities=24%  Similarity=0.372  Sum_probs=33.0

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPF   88 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~   88 (523)
                      +.-+|+|||||++|+++|++|++ |++|+|||+.+..+
T Consensus        29 ~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~~G   66 (370)
T d2iida1          29 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPG   66 (370)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSB
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCC
Confidence            34589999999999999999999 99999999987543

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.04  E-value=7.3e-07  Score=82.55  Aligned_cols=38  Identities=32%  Similarity=0.396  Sum_probs=35.0

Q ss_pred             cccCCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           48 EVAGKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        48 ~~~~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      ....++||+||||+|++|+.+|..|++ |.+|+|||+.+
T Consensus        37 ~~~~k~yDvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~   75 (261)
T d1mo9a1          37 ENDPREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWP   75 (261)
T ss_dssp             TTCCSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CCCCccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            445689999999999999999999999 99999999986

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=98.03  E-value=9.3e-07  Score=83.43  Aligned_cols=34  Identities=29%  Similarity=0.418  Sum_probs=31.2

Q ss_pred             EEEECCCCchHHHHhhhhc-cCeeEEEecCCCCCC
Q 009873           56 YIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPFG   89 (523)
Q Consensus        56 vIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~~   89 (523)
                      |||||||++|+++|++|++ |++|+||||++..++
T Consensus         4 V~IIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG   38 (373)
T d1seza1           4 VAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGG   38 (373)
T ss_dssp             EEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCS
T ss_pred             EEEECcCHHHHHHHHHHHhCCCCEEEEeCCCCCcC
Confidence            9999999999999999999 999999999875543

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.01  E-value=1.5e-05  Score=63.46  Aligned_cols=30  Identities=27%  Similarity=0.315  Sum_probs=29.1

Q ss_pred             EEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           56 YIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        56 vIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      ++|||+|+.|+-+|..|++ |.+|.|+|+++
T Consensus        24 vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~   54 (116)
T d1gesa2          24 VAVVGAGYIGVELGGVINGLGAKTHLFEMFD   54 (116)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             EEEECCChhhHHHHHHhhccccEEEEEeecc
Confidence            9999999999999999999 99999999986

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.01  E-value=3.4e-05  Score=61.59  Aligned_cols=31  Identities=23%  Similarity=0.319  Sum_probs=29.6

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .++|||||..|+-+|..|++ |.+|.++|+.+
T Consensus        24 ~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~   55 (119)
T d3lada2          24 KLGVIGAGVIGLELGSVWARLGAEVTVLEAMD   55 (119)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             eEEEECCChHHHHHHHHHHHcCCceEEEEeec
Confidence            49999999999999999999 99999999986

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.00  E-value=4e-05  Score=61.35  Aligned_cols=31  Identities=19%  Similarity=0.331  Sum_probs=29.3

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      -++|||+|..|+=+|..|+. |.+|.++|+++
T Consensus        24 ~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~   55 (121)
T d1mo9a2          24 TVVVVGGSKTAVEYGCFFNATGRRTVMLVRTE   55 (121)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             EEEEECCCHHHHHHHHHHHhcchhheEeeccc
Confidence            59999999999999999998 99999999986

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.00  E-value=1.1e-06  Score=80.23  Aligned_cols=35  Identities=17%  Similarity=0.402  Sum_probs=31.7

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-c-CeeEEEecCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-N-FSVLLVERGG   85 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g-~~VlvlE~G~   85 (523)
                      .++||+||||||+||+++|.++++ | .+|+|+|+..
T Consensus         1 ~k~YDvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~   37 (240)
T d1feca1           1 SRAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQK   37 (240)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCS
T ss_pred             CCccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEEec
Confidence            368999999999999999999999 7 5699999876

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=97.96  E-value=1.9e-05  Score=63.75  Aligned_cols=31  Identities=23%  Similarity=0.407  Sum_probs=29.6

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .++|||+|+.|+=+|..+++ |.+|.++|+++
T Consensus        28 ~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~   59 (125)
T d1ojta2          28 KLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMD   59 (125)
T ss_dssp             EEEEESCSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             eEEEECCCHHHHHHHHHhhcCCCEEEEEEeec
Confidence            49999999999999999999 99999999986

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=97.95  E-value=1.6e-06  Score=82.41  Aligned_cols=35  Identities=20%  Similarity=0.455  Sum_probs=31.6

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPFG   89 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~~   89 (523)
                      -|+|||||++|+++|++|++ |++|+|+||.+..++
T Consensus         4 KI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~iGG   39 (314)
T d2bi7a1           4 KILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGG   39 (314)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSG
T ss_pred             EEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCCcC
Confidence            48999999999999999999 899999999985543

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.93  E-value=1.2e-06  Score=76.90  Aligned_cols=35  Identities=20%  Similarity=0.187  Sum_probs=32.6

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .+.+||+|||||++|+.+|..|++ |++|+|+|+..
T Consensus         3 ~~~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~   38 (192)
T d1vdca1           3 THNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWM   38 (192)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSS
T ss_pred             cccceEEEECCCHHHHHHHHHHHHcCCcEEEEEeec
Confidence            457999999999999999999999 99999999876

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=97.93  E-value=2e-06  Score=77.95  Aligned_cols=34  Identities=26%  Similarity=0.372  Sum_probs=30.8

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-c-CeeEEEecCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-N-FSVLLVERGG   85 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g-~~VlvlE~G~   85 (523)
                      +.||+||||+|++|+++|.+|++ | .+|+|+|+..
T Consensus         2 ~~YDviIIG~GpaGl~aA~~aa~~g~k~V~iie~~~   37 (238)
T d1aoga1           2 KIFDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQM   37 (238)
T ss_dssp             CSBSEEEECCSHHHHHHHHHHHHTSCCCEEEEESCS
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEeec
Confidence            67999999999999999999998 7 5799999864

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=97.93  E-value=1.4e-06  Score=76.31  Aligned_cols=35  Identities=20%  Similarity=0.330  Sum_probs=32.4

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .+..||||||||++|+.+|+.|++ |++|+|||+..
T Consensus         3 ~k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~   38 (190)
T d1trba1           3 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGME   38 (190)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSS
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeec
Confidence            356899999999999999999999 99999999875

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.92  E-value=5.9e-05  Score=59.96  Aligned_cols=31  Identities=29%  Similarity=0.604  Sum_probs=29.7

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .++|||||+.|+-+|..|++ |.+|.|+|+++
T Consensus        24 ~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~   55 (117)
T d1ebda2          24 SLVVIGGGYIGIELGTAYANFGTKVTILEGAG   55 (117)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             eEEEECCCccceeeeeeecccccEEEEEEecc
Confidence            59999999999999999999 99999999997

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=97.90  E-value=3.8e-06  Score=72.40  Aligned_cols=38  Identities=21%  Similarity=0.238  Sum_probs=33.6

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPF   88 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~   88 (523)
                      .....|+|||||++|+.+|+.|++ |++|+|+||.+...
T Consensus        41 ~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~G   79 (179)
T d1ps9a3          41 VQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIG   79 (179)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSC
T ss_pred             CCCcEEEEECccHHHHHHHHHHHhhccceEEEeccCccC
Confidence            345679999999999999999999 99999999987543

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=97.88  E-value=3.5e-05  Score=61.90  Aligned_cols=31  Identities=23%  Similarity=0.389  Sum_probs=29.6

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .++|||+|..|+-+|..+++ |.+|.|+|+++
T Consensus        27 ~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~   58 (123)
T d1dxla2          27 KLVVIGAGYIGLEMGSVWGRIGSEVTVVEFAS   58 (123)
T ss_dssp             EEEESCCSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             eEEEEccchHHHHHHHHHHhcCCeEEEEEEcc
Confidence            49999999999999999999 99999999997

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.87  E-value=4.3e-05  Score=60.58  Aligned_cols=31  Identities=32%  Similarity=0.461  Sum_probs=29.6

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .++|||||+.|+-+|..|++ |.+|.|+|+++
T Consensus        23 ~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~   54 (115)
T d1lvla2          23 HLVVVGGGYIGLELGIAYRKLGAQVSVVEARE   54 (115)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             eEEEECCCHHHHHHHHHHhhcccceEEEeeec
Confidence            49999999999999999999 99999999986

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.86  E-value=8.7e-05  Score=59.42  Aligned_cols=31  Identities=26%  Similarity=0.405  Sum_probs=29.5

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      -++|||+|+.|+-+|..|++ |.+|.|+|+.+
T Consensus        25 ~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~   56 (122)
T d1v59a2          25 RLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQP   56 (122)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             eEEEECCCchHHHHHHHHHhhCcceeEEEecc
Confidence            49999999999999999999 99999999986

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=97.83  E-value=3.8e-06  Score=80.86  Aligned_cols=36  Identities=25%  Similarity=0.480  Sum_probs=32.0

Q ss_pred             CcccEEEECCCCchHHHHhhhh-----c-cCeeEEEecCCCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLS-----D-NFSVLLVERGGSP   87 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~La-----e-g~~VlvlE~G~~~   87 (523)
                      ..|||||||||++|+++|..|+     . |++|+||||.+.+
T Consensus         6 ~~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~   47 (360)
T d1pn0a1           6 SYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTK   47 (360)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCC
Confidence            4699999999999999999996     3 8999999998644

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.77  E-value=5.5e-06  Score=76.80  Aligned_cols=33  Identities=27%  Similarity=0.479  Sum_probs=30.4

Q ss_pred             ccEEEECCCCchHHHHhhhhc-cC-eeEEEecCCC
Q 009873           54 FDYIVVGGGTTGCPLAATLSD-NF-SVLLVERGGS   86 (523)
Q Consensus        54 ~DvIIVGsG~aG~~~A~~Lae-g~-~VlvlE~G~~   86 (523)
                      +||+|||||++|+++|+.|++ |. +|+|+||.+.
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~   36 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSE   36 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence            699999999999999999999 85 9999999863

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.73  E-value=7e-06  Score=77.83  Aligned_cols=37  Identities=27%  Similarity=0.466  Sum_probs=33.2

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc---cCeeEEEecCCCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD---NFSVLLVERGGSP   87 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae---g~~VlvlE~G~~~   87 (523)
                      ..++||+|||+|++|+++|+.|++   |++|+|+|+.+..
T Consensus        48 ~~~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~   87 (311)
T d2gjca1          48 FAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAP   87 (311)
T ss_dssp             TTEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSC
T ss_pred             ccCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Confidence            457999999999999999999985   7999999998744

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.73  E-value=7.3e-05  Score=59.86  Aligned_cols=30  Identities=23%  Similarity=0.316  Sum_probs=28.1

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERG   84 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G   84 (523)
                      -++|||||+.|+-+|..|++ |.+|.|||+.
T Consensus        22 ~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~   52 (122)
T d1h6va2          22 KTLVVGASYVALECAGFLAGIGLDVTVMVRS   52 (122)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             eEEEECCCccHHHHHHHHhhcCCeEEEEEec
Confidence            49999999999999999999 9999999974

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=0.00019  Score=57.61  Aligned_cols=31  Identities=26%  Similarity=0.340  Sum_probs=29.6

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .++|||+|+.|+-+|..|++ |.+|.|+|+++
T Consensus        24 ~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~   55 (125)
T d3grsa2          24 RSVIVGAGYIAVEMAGILSALGSKTSLMIRHD   55 (125)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             EEEEEcCCccHHHHHHHHhcCCcEEEEEeecc
Confidence            59999999999999999999 99999999986

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=5.9e-06  Score=73.70  Aligned_cols=34  Identities=24%  Similarity=0.509  Sum_probs=30.3

Q ss_pred             CcccEEEECCCCchHHHHhhhhc-c--CeeEEEecCC
Q 009873           52 KSFDYIVVGGGTTGCPLAATLSD-N--FSVLLVERGG   85 (523)
Q Consensus        52 ~~~DvIIVGsG~aG~~~A~~Lae-g--~~VlvlE~G~   85 (523)
                      .++++||||||++|+.+|..|.+ +  .+|++|++.+
T Consensus         3 ~~~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~   39 (213)
T d1m6ia1           3 SHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDP   39 (213)
T ss_dssp             SEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSS
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCC
Confidence            57899999999999999999987 5  6899998865

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=97.59  E-value=0.00024  Score=56.29  Aligned_cols=31  Identities=29%  Similarity=0.370  Sum_probs=26.7

Q ss_pred             cEEEECCCCchHHHHhhhh---c-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLS---D-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~La---e-g~~VlvlE~G~   85 (523)
                      .++|||+|+.|+=+|..|+   . |.+|.++|+++
T Consensus        20 ~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~   54 (117)
T d1feca2          20 RALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGD   54 (117)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSS
T ss_pred             eEEEECCChHHHHHHHHhHhhcccccccceecccc
Confidence            4999999999999997654   3 68999999986

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=0.00023  Score=58.12  Aligned_cols=31  Identities=26%  Similarity=0.405  Sum_probs=27.6

Q ss_pred             cEEEECCCCchHHHHhhhhc-----cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-----NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-----g~~VlvlE~G~   85 (523)
                      .++|||+|+.|+-+|..|++     |.+|.++|+++
T Consensus        39 ~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~   74 (137)
T d1m6ia2          39 SITIIGGGFLGSELACALGRKARALGTEVIQLFPEK   74 (137)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccc
Confidence            59999999999999988863     68999999986

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.56  E-value=1.8e-05  Score=69.16  Aligned_cols=32  Identities=16%  Similarity=0.338  Sum_probs=29.3

Q ss_pred             EEEECCCCchHHHHhhhhc-cC-eeEEEecCCCC
Q 009873           56 YIVVGGGTTGCPLAATLSD-NF-SVLLVERGGSP   87 (523)
Q Consensus        56 vIIVGsG~aG~~~A~~Lae-g~-~VlvlE~G~~~   87 (523)
                      |+|||||++|+.+|..|++ |+ .|.|+||.+..
T Consensus         7 VaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~   40 (196)
T d1gtea4           7 IALLGAGPASISCASFLARLGYSDITIFEKQEYV   40 (196)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSC
T ss_pred             EEEECChHHHHHHHHHHHHCCCCeEEEEEecCcc
Confidence            9999999999999999999 87 59999998744

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.54  E-value=2.3e-05  Score=70.78  Aligned_cols=37  Identities=22%  Similarity=0.394  Sum_probs=33.5

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSP   87 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~   87 (523)
                      ...-+|+|||||++|+++|..|++ |++|+|+|+.+..
T Consensus        47 ~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~   84 (233)
T d1djqa3          47 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKI   84 (233)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSST
T ss_pred             cCCceEEEEcccHHHHHHHHHHHHhccceeeEeecccc
Confidence            456789999999999999999999 9999999998744

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.42  E-value=3e-05  Score=69.88  Aligned_cols=35  Identities=26%  Similarity=0.391  Sum_probs=31.1

Q ss_pred             ccEEEECCCCchHHHHhhhhc-c-------CeeEEEecCCCCC
Q 009873           54 FDYIVVGGGTTGCPLAATLSD-N-------FSVLLVERGGSPF   88 (523)
Q Consensus        54 ~DvIIVGsG~aG~~~A~~Lae-g-------~~VlvlE~G~~~~   88 (523)
                      +.|.|||||++|++||+.|++ |       ++|.|+||.+...
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~G   45 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPW   45 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCS
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCC
Confidence            679999999999999999988 6       5899999997554

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.36  E-value=2.5e-05  Score=70.50  Aligned_cols=32  Identities=22%  Similarity=0.461  Sum_probs=28.0

Q ss_pred             ccEEEECCCCchHHHHhhhhc-c---CeeEEEecCC
Q 009873           54 FDYIVVGGGTTGCPLAATLSD-N---FSVLLVERGG   85 (523)
Q Consensus        54 ~DvIIVGsG~aG~~~A~~Lae-g---~~VlvlE~G~   85 (523)
                      .+|||||||++|+++|.++++ +   ++|+|+|++.
T Consensus         2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~   37 (233)
T d1xdia1           2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG   37 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC
T ss_pred             cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecCC
Confidence            379999999999999999876 4   7899999973

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.32  E-value=5.3e-05  Score=68.00  Aligned_cols=33  Identities=30%  Similarity=0.328  Sum_probs=29.3

Q ss_pred             cEEEECCCCchHHHHhhhhc---cCeeEEEecCCCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD---NFSVLLVERGGSP   87 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae---g~~VlvlE~G~~~   87 (523)
                      -|+|||||++|++||..|++   +++|+|+|+.+.+
T Consensus         3 kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~   38 (230)
T d1cjca2           3 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVP   38 (230)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSS
T ss_pred             eEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCC
Confidence            48999999999999999975   5899999999744

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=97.12  E-value=0.0016  Score=51.23  Aligned_cols=31  Identities=29%  Similarity=0.428  Sum_probs=26.8

Q ss_pred             cEEEECCCCchHHHHhhhhc----cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD----NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae----g~~VlvlE~G~   85 (523)
                      .++|||||+.|+-+|..|+.    +.+|.|+|+++
T Consensus        22 ~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~   56 (117)
T d1aoga2          22 RVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGE   56 (117)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSS
T ss_pred             eEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccc
Confidence            59999999999999977654    46899999986

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.06  E-value=3.8e-05  Score=69.26  Aligned_cols=30  Identities=27%  Similarity=0.324  Sum_probs=27.8

Q ss_pred             EEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           56 YIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        56 vIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      |+|||||++|+++|++|++ |.+|+++|+..
T Consensus         3 V~VIGaGi~GlstA~~L~~~G~~v~v~e~~~   33 (246)
T d1kifa1           3 VVVIGAGVIGLSTALCIHERYHSVLQPLDVK   33 (246)
T ss_dssp             EEEECCSHHHHHHHHHHHHHHTTTSSSCEEE
T ss_pred             EEEECchHHHHHHHHHHHHCCCCceEEeeee
Confidence            8999999999999999999 89999988864

>d2f5va2 d.16.1.1 (A:355-552) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GMC oxidoreductases
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=96.82  E-value=0.00074  Score=58.44  Aligned_cols=56  Identities=14%  Similarity=0.092  Sum_probs=47.2

Q ss_pred             EeeecCcCcceEEEecC--CCCCCCCeeecCCCCChhhHHHHHH-HHHHHHHHhccccc
Q 009873          373 AAKLAFPISKGKLELDS--TDPRQNPSIKFNYLAKEKDLHECVK-MVQLLDKVTKSQSV  428 (523)
Q Consensus       373 ~~~~~~p~s~g~v~l~~--~d~~~~p~i~~~~~~~~~D~~~~~~-~~~~~~~i~~~~~~  428 (523)
                      ......|..+|+|+|++  +|.+|.|.++++|..+++|.+.+.. +.+.+.+++..++.
T Consensus       119 ~~ge~~P~~~Nrv~l~~~~~D~~GiP~~~~~~~~~~ne~~~~~~~m~~~~~~~~~a~Gg  177 (198)
T d2f5va2         119 FFGRTEPKEENKLWFSDKITDAYNMPQPTFDFRFPAGRTSKEAEDMMTDMCVMSAKIGG  177 (198)
T ss_dssp             EEECCCCCTTCEEEEEEEEECTTSSEEEEEECCCCTTHHHHHHHHHHHHHHHHHTTTEE
T ss_pred             EEecccCCCCCEEEeCCCCcCCCCCCeeEEEEecCccHHHHHHHHHHHHHHHHHHHcCC
Confidence            34567999999999985  6999999999999999999887775 56788999988764

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=96.71  E-value=0.01  Score=47.09  Aligned_cols=47  Identities=21%  Similarity=0.443  Sum_probs=39.3

Q ss_pred             CCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEec-CCCCCceeEEEecCCCCCCCCCcEEEecC
Q 009873          231 PKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKS-DGSSNHMHEAYLNKPGNSSTWGDVILSAG  295 (523)
Q Consensus       231 ~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~-~g~~~~~~~i~a~~~~~~~~~~~VILaaG  295 (523)
                      .+|++++++++|+.|.-+++      ++++|++.+. +|+   ..++.+         +.|.++-|
T Consensus        78 ~~~I~v~~~~~v~~i~G~~~------~v~~v~l~~~~tge---~~~l~v---------dgvFv~IG  125 (126)
T d1fl2a2          78 LKNVDIILNAQTTEVKGDGS------KVVGLEYRDRVSGD---IHNIEL---------AGIFVQIG  125 (126)
T ss_dssp             CTTEEEESSEEEEEEEESSS------SEEEEEEEETTTCC---EEEEEC---------SEEEECSC
T ss_pred             ccceeEEcCcceEEEEcccc------ceeeEEEEECCCCC---EEEEEC---------CEEEEEeC
Confidence            46799999999999987766      7999999874 477   778887         99988876

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.61  E-value=0.00041  Score=55.32  Aligned_cols=31  Identities=39%  Similarity=0.789  Sum_probs=29.7

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      +++|||||+.|+-+|..|++ |.+|.|+|+++
T Consensus        34 ~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~   65 (122)
T d1xhca2          34 EAIIIGGGFIGLELAGNLAEAGYHVKLIHRGA   65 (122)
T ss_dssp             EEEEEECSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             cEEEECCcHHHHHHHHHhhcccceEEEEeccc
Confidence            69999999999999999999 99999999986

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=96.50  E-value=0.00072  Score=53.34  Aligned_cols=31  Identities=19%  Similarity=0.366  Sum_probs=29.5

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      -++|||||+.|+-+|..|+. |.+|.|+|+++
T Consensus        24 ~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~   55 (117)
T d1onfa2          24 KIGIVGSGYIAVELINVIKRLGIDSYIFARGN   55 (117)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCEEEEECSSS
T ss_pred             EEEEECCchHHHHHHHHHHhccccceeeehhc
Confidence            49999999999999999999 99999999986

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=96.48  E-value=0.00073  Score=53.65  Aligned_cols=33  Identities=39%  Similarity=0.501  Sum_probs=30.6

Q ss_pred             ccEEEECCCCchHHHHhhhhc-cCeeEEEecCCC
Q 009873           54 FDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGS   86 (523)
Q Consensus        54 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~   86 (523)
                      -.++|||||+.|+-+|..|++ |.+|.|+|+++.
T Consensus        31 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~   64 (121)
T d1d7ya2          31 SRLLIVGGGVIGLELAATARTAGVHVSLVETQPR   64 (121)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CeEEEECcchhHHHHHHHhhcccceEEEEeeccc
Confidence            469999999999999999999 999999999873

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.46  E-value=0.00075  Score=53.76  Aligned_cols=31  Identities=19%  Similarity=0.350  Sum_probs=29.7

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .++|||+|+.|+-+|..|++ |.+|.|+|+.+
T Consensus        32 ~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~   63 (123)
T d1nhpa2          32 NVVVIGSGYIGIEAAEAFAKAGKKVTVIDILD   63 (123)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             EEEEECChHHHHHHHHHhhccceEEEEEEecC
Confidence            69999999999999999999 99999999986

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=96.22  E-value=0.0011  Score=56.20  Aligned_cols=31  Identities=35%  Similarity=0.539  Sum_probs=28.1

Q ss_pred             cEEEECCCCchHHHHhhhhc-c--CeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-N--FSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g--~~VlvlE~G~   85 (523)
                      -|||||||++|+.+|.+|.+ +  .+|+|||+.+
T Consensus         4 rivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           4 KVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             cEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            38999999999999999988 5  6899999876

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.05  E-value=0.0021  Score=53.73  Aligned_cols=31  Identities=29%  Similarity=0.584  Sum_probs=28.7

Q ss_pred             EEEECCCCchHHHHhhhhccCeeEEEecCCC
Q 009873           56 YIVVGGGTTGCPLAATLSDNFSVLLVERGGS   86 (523)
Q Consensus        56 vIIVGsG~aG~~~A~~Laeg~~VlvlE~G~~   86 (523)
                      |+|||||++|+-+|..|+++.+|.|+|+.+.
T Consensus         3 VvIIGgG~~G~e~A~~l~~~~~Vtvv~~~~~   33 (167)
T d1xhca1           3 VVIVGNGPGGFELAKQLSQTYEVTVIDKEPV   33 (167)
T ss_dssp             EEEECCSHHHHHHHHHHTTTSEEEEECSSSS
T ss_pred             EEEECCcHHHHHHHHHHHcCCCEEEEecccc
Confidence            8999999999999999988889999998763

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=95.95  E-value=0.0016  Score=55.45  Aligned_cols=32  Identities=22%  Similarity=0.358  Sum_probs=29.1

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGGS   86 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~   86 (523)
                      ||||||||++|+-+|..|++ |.+|.|+|+.+.
T Consensus         5 ~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~   37 (185)
T d1q1ra1           5 NVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDA   37 (185)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CEEEECCcHHHHHHHHHHHHcCCceEEEEecCc
Confidence            79999999999999999999 889888888763

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.82  E-value=0.059  Score=42.61  Aligned_cols=33  Identities=24%  Similarity=0.378  Sum_probs=30.2

Q ss_pred             cccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           53 SFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        53 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .=||+|||+|-+.+-.|..|++ ..+|.||-|++
T Consensus        34 gk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~   67 (130)
T d1vdca2          34 NKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD   67 (130)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSS
T ss_pred             CCEEEEEcCchHHHHHHHHHhCCCCcEEEEEecc
Confidence            3479999999999999999999 79999999886

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.76  E-value=0.0026  Score=62.38  Aligned_cols=39  Identities=33%  Similarity=0.353  Sum_probs=36.0

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-cCeeEEEecCCCCCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGSPFG   89 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~~~~   89 (523)
                      ..+|||||+|.|..=+.+|..|+. |+|||-||+..+.++
T Consensus         4 P~e~DVII~GTGL~ESILAaAlSr~GkkVLHiD~N~yYGg   43 (491)
T d1vg0a1           4 PSDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGG   43 (491)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCG
T ss_pred             CCccCEEEECCChHHHHHHHHHHhcCCEEEEecCCCcCCC
Confidence            468999999999999999999999 999999999987655

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=95.66  E-value=0.05  Score=42.78  Aligned_cols=32  Identities=34%  Similarity=0.419  Sum_probs=29.6

Q ss_pred             ccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           54 FDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        54 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      =+|+|||+|-+++=.|..|++ ..+|.+|-|++
T Consensus        28 k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~   60 (126)
T d1trba2          28 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRD   60 (126)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTTSSEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHhhcCCcEEEEeecc
Confidence            379999999999999999999 89999998885

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=95.49  E-value=0.0046  Score=52.15  Aligned_cols=30  Identities=23%  Similarity=0.334  Sum_probs=28.5

Q ss_pred             EEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           56 YIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        56 vIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      |+|||+|..|..+|..|++ |++|.|++|..
T Consensus         5 IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~   35 (182)
T d1e5qa1           5 VLMLGSGFVTRPTLDVLTDSGIKVTVACRTL   35 (182)
T ss_dssp             EEEECCSTTHHHHHHHHHTTTCEEEEEESCH
T ss_pred             EEEECCCHHHHHHHHHHHhCCCEEEEEECCh
Confidence            8999999999999999999 89999999975

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.28  E-value=0.0044  Score=53.42  Aligned_cols=30  Identities=23%  Similarity=0.384  Sum_probs=27.6

Q ss_pred             EEEECCCCchHHHHhhhhc-c--CeeEEEecCC
Q 009873           56 YIVVGGGTTGCPLAATLSD-N--FSVLLVERGG   85 (523)
Q Consensus        56 vIIVGsG~aG~~~A~~Lae-g--~~VlvlE~G~   85 (523)
                      |+|||||.+|+.+|..|++ +  .+|.++|+++
T Consensus         3 VvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~   35 (198)
T d1nhpa1           3 VIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGD   35 (198)
T ss_dssp             EEEECSSHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred             EEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            8999999999999999988 4  7899999986

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=95.08  E-value=0.0037  Score=53.18  Aligned_cols=31  Identities=23%  Similarity=0.446  Sum_probs=27.7

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .|||||||++|+-+|..|.+ |.+|.|++.++
T Consensus         5 ~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~   36 (183)
T d1d7ya1           5 PVVVLGAGLASVSFVAELRQAGYQGLITVVGD   36 (183)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCSCEEEEES
T ss_pred             CEEEECccHHHHHHHHHHHhcCCceEEEEEec
Confidence            49999999999999999999 88888887765

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=94.11  E-value=0.013  Score=48.58  Aligned_cols=30  Identities=23%  Similarity=0.141  Sum_probs=28.5

Q ss_pred             EEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           56 YIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        56 vIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      |.|||+|..|+..|..|++ |++|.++.|..
T Consensus         3 I~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~   33 (167)
T d1ks9a2           3 ITVLGCGALGQLWLTALCKQGHEVQGWLRVP   33 (167)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             EEEECcCHHHHHHHHHHHHCCCceEEEEcCH
Confidence            7899999999999999999 89999999976

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=93.92  E-value=0.014  Score=49.30  Aligned_cols=30  Identities=37%  Similarity=0.407  Sum_probs=28.3

Q ss_pred             EEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           56 YIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        56 vIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      +.|||+|..|+.+|..|++ |++|.++++.+
T Consensus         4 iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~   34 (184)
T d1bg6a2           4 YAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   34 (184)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEECccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            7899999999999999999 89999999864

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.84  E-value=0.016  Score=46.22  Aligned_cols=30  Identities=30%  Similarity=0.553  Sum_probs=28.3

Q ss_pred             EEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           56 YIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        56 vIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      |||+|+|..|..+|..|.+ |++|++||+.+
T Consensus         3 IvI~G~G~~G~~la~~L~~~g~~v~vid~d~   33 (132)
T d1lssa_           3 IIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK   33 (132)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEECCCHHHHHHHHHHHHCCCCcceecCCh
Confidence            7999999999999999988 99999999975

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=93.70  E-value=0.019  Score=42.58  Aligned_cols=31  Identities=13%  Similarity=0.228  Sum_probs=28.7

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      -|+|+|.|.+|.++|..|++ |.+|.+.|...
T Consensus         7 ~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~   38 (93)
T d2jfga1           7 NVVIIGLGLTGLSCVDFFLARGVTPRVMDTRM   38 (93)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEESSS
T ss_pred             EEEEEeECHHHHHHHHHHHHCCCEEEEeeCCc
Confidence            38999999999999999998 99999999875

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=93.10  E-value=0.021  Score=45.49  Aligned_cols=31  Identities=26%  Similarity=0.421  Sum_probs=28.8

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .|||||.|-.|..+|..|.+ |++|+++|+.+
T Consensus         2 ~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~   33 (134)
T d2hmva1           2 QFAVIGLGRFGGSIVKELHRMGHEVLAVDINE   33 (134)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEecCcH
Confidence            38999999999999999998 99999999875

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=92.58  E-value=0.043  Score=44.88  Aligned_cols=31  Identities=16%  Similarity=0.126  Sum_probs=27.8

Q ss_pred             cEEEE--CCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVV--GGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIV--GsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .+|||  |+|..|+-+|..|++ |.+|.|+|+.+
T Consensus        41 ~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~   74 (156)
T d1djqa2          41 RVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH   74 (156)
T ss_dssp             EEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             ceEEEecCCChHHHHHHHHHHHcCCeEEEEecCC
Confidence            46665  999999999999999 99999999976

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.81  E-value=0.04  Score=46.92  Aligned_cols=30  Identities=30%  Similarity=0.551  Sum_probs=28.1

Q ss_pred             EEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           56 YIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        56 vIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      |.|||+|..|...|..++. |++|+++|+.+
T Consensus         7 vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~   37 (192)
T d1f0ya2           7 VTVIGGGLMGAGIAQVAAATGHTVVLVDQTE   37 (192)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEECcCHHHHHHHHHHHhCCCcEEEEECCh
Confidence            8899999999999999998 99999999874

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=90.61  E-value=0.066  Score=40.66  Aligned_cols=32  Identities=22%  Similarity=0.249  Sum_probs=27.0

Q ss_pred             ccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           54 FDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        54 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      =+|+|||+|.+|.=+|..|++ ..+|+++-+-+
T Consensus        33 K~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~   65 (107)
T d2gv8a2          33 ESVLVVGGASSANDLVRHLTPVAKHPIYQSLLG   65 (107)
T ss_dssp             CCEEEECSSHHHHHHHHHHTTTSCSSEEEECTT
T ss_pred             CeEEEECCCCCHHHHHHHHHHhcCEEEEEEecC
Confidence            369999999999999999999 77777766644

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.57  E-value=0.083  Score=45.23  Aligned_cols=30  Identities=27%  Similarity=0.300  Sum_probs=27.7

Q ss_pred             EEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           56 YIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        56 vIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      +.|||.|..|+++|..||+ |++|+.+|...
T Consensus         3 I~ViGlG~vGl~~a~~la~~g~~V~g~D~n~   33 (202)
T d1mv8a2           3 ISIFGLGYVGAVCAGCLSARGHEVIGVDVSS   33 (202)
T ss_dssp             EEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEECCCHhHHHHHHHHHhCCCcEEEEeCCH
Confidence            7899999999999999999 99999999754

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=90.02  E-value=0.056  Score=45.70  Aligned_cols=30  Identities=20%  Similarity=0.300  Sum_probs=27.7

Q ss_pred             EEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           56 YIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        56 vIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      |.|||+|..|...|..++. |++|.++|+..
T Consensus         7 vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~   37 (186)
T d1wdka3           7 AAVLGAGIMGGGIAYQSASKGTPILMKDINE   37 (186)
T ss_dssp             EEEECCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             EEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            8999999999999999888 99999999864

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=89.88  E-value=0.072  Score=45.14  Aligned_cols=31  Identities=29%  Similarity=0.327  Sum_probs=28.1

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .+.|||+|.-|.++|..|++ |.+|.+..+..
T Consensus         9 KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~   40 (189)
T d1n1ea2           9 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNE   40 (189)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTEEEEEEECSCH
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEEecH
Confidence            49999999999999999999 79999998753

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=89.62  E-value=0.097  Score=42.59  Aligned_cols=31  Identities=35%  Similarity=0.415  Sum_probs=27.3

Q ss_pred             cEEEECCCCchHHHHhhhhc-c-CeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-N-FSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g-~~VlvlE~G~   85 (523)
                      .|||||||-+|+=+|..|.+ | .+|.+++|.+
T Consensus        47 kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~   79 (153)
T d1gtea3          47 AVIVLGAGDTAFDCATSALRCGARRVFLVFRKG   79 (153)
T ss_dssp             EEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             EEEEECCChhHHHHHHHHHHcCCcceeEEEeCC
Confidence            49999999999999999887 7 5699998875

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=89.36  E-value=0.1  Score=42.83  Aligned_cols=33  Identities=18%  Similarity=0.269  Sum_probs=29.6

Q ss_pred             cccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           53 SFDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        53 ~~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      ...|+|+|+|.+|+.+|..+.. |.+|.++|...
T Consensus        32 pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~   65 (168)
T d1pjca1          32 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV   65 (168)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcH
Confidence            3569999999999999999988 99999999864

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=89.33  E-value=2.3  Score=36.25  Aligned_cols=52  Identities=25%  Similarity=0.376  Sum_probs=36.3

Q ss_pred             hCCCCCeEEEeccEEEEEEEcCCCCCCCceeeEEEEEec-------------CCCCCceeEEEecCCCCCCCCCcEEEec
Q 009873          228 AGNPKNLVVLLNATVNNIIFSNNGKANESRAHGIRFIKS-------------DGSSNHMHEAYLNKPGNSSTWGDVILSA  294 (523)
Q Consensus       228 ~~~~~g~~i~~~~~V~~l~~~~~g~~~~~~v~GV~~~~~-------------~g~~~~~~~i~a~~~~~~~~~~~VILaa  294 (523)
                      .+...++.+.+...-.+++.++++.    ++.+|++...             .|+   ...+.|         +.||+|.
T Consensus       160 ~~~~~~i~~~f~~~p~~i~~~~~g~----~v~~v~~~~~~~~~~~~~~~~~~tg~---~~~ipa---------dlVi~Ai  223 (225)
T d1cjca1         160 ASASRAWGLRFFRSPQQVLPSPDGR----RAAGIRLAVTRLEGIGEATRAVPTGD---VEDLPC---------GLVLSSI  223 (225)
T ss_dssp             HTCSEEEEEECSEEEEEEEECTTSS----SEEEEEEEEEEEESSGGGCEEEEEEE---EEEEEC---------SEEEECC
T ss_pred             cccccceEEEeecccccccccCCCC----eEEEEEEEEeEECCCCCCCcccCCCc---EEEEEC---------CEEEECC
Confidence            3456678888888888988876543    7888876431             133   455665         9999998


Q ss_pred             C
Q 009873          295 G  295 (523)
Q Consensus       295 G  295 (523)
                      |
T Consensus       224 G  224 (225)
T d1cjca1         224 G  224 (225)
T ss_dssp             C
T ss_pred             C
Confidence            7

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=89.29  E-value=0.097  Score=43.61  Aligned_cols=32  Identities=22%  Similarity=0.229  Sum_probs=29.3

Q ss_pred             ccEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           54 FDYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        54 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      ..|+|+|+|.+|+.||..+.. |.+|.++|...
T Consensus        30 a~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~   62 (183)
T d1l7da1          30 ARVLVFGVGVAGLQAIATAKRLGAVVMATDVRA   62 (183)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCS
T ss_pred             cEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccH
Confidence            579999999999999998888 99999999875

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=88.57  E-value=0.11  Score=43.45  Aligned_cols=30  Identities=23%  Similarity=0.324  Sum_probs=27.0

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERG   84 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G   84 (523)
                      .|.|||+|.-|.+.|..|++ |.+|.+..|.
T Consensus         2 kI~ViGaG~~GtalA~~la~~g~~V~l~~r~   32 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVDNGNEVRIWGTE   32 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECCG
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEEec
Confidence            37899999999999999999 8999998654

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.13  E-value=0.097  Score=42.36  Aligned_cols=29  Identities=24%  Similarity=0.402  Sum_probs=26.6

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEec
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVER   83 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~   83 (523)
                      -++|||||..|+.-|..|.+ |.+|.|+-.
T Consensus        15 rvLViGgG~va~~ka~~Ll~~GA~VtVvap   44 (150)
T d1kyqa1          15 RILLIGGGEVGLTRLYKLMPTGCKLTLVSP   44 (150)
T ss_dssp             EEEEEEESHHHHHHHHHHGGGTCEEEEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEeC
Confidence            39999999999999999999 999999943

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=87.91  E-value=0.14  Score=42.89  Aligned_cols=30  Identities=23%  Similarity=0.360  Sum_probs=27.0

Q ss_pred             EEEE-CCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           56 YIVV-GGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        56 vIIV-GsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      +.|| |+|..|..+|.+|++ |++|+|..|.+
T Consensus         3 i~vigGaG~iG~alA~~la~~G~~V~l~~R~~   34 (212)
T d1jaya_           3 VALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             EEEEeCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            6788 789999999999999 99999998864

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=87.74  E-value=0.15  Score=38.94  Aligned_cols=30  Identities=23%  Similarity=0.308  Sum_probs=27.3

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERG   84 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G   84 (523)
                      -|+|||+|..|..-|..|.+ |.+|+|+...
T Consensus        14 ~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~   44 (113)
T d1pjqa1          14 DCLIVGGGDVAERKARLLLEAGARLTVNALT   44 (113)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            49999999999999999999 9999999754

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=86.52  E-value=0.18  Score=41.35  Aligned_cols=30  Identities=33%  Similarity=0.349  Sum_probs=27.4

Q ss_pred             EEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           56 YIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        56 vIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      +-|||.|..|.+.|..|++ |++|.+.++..
T Consensus         3 I~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~   33 (165)
T d2f1ka2           3 IGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ   33 (165)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEeecHHHHHHHHHHHHCCCEEEEEECCc
Confidence            6799999999999999998 99999998864

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=86.05  E-value=0.19  Score=41.51  Aligned_cols=31  Identities=16%  Similarity=0.292  Sum_probs=28.0

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .|+|+|+|.++-++++.|.+ |.+|.|+-|-.
T Consensus        20 ~vlIlGaGGaarai~~al~~~g~~i~I~nRt~   51 (170)
T d1nyta1          20 RILLIGAGGASRGVLLPLLSLDCAVTITNRTV   51 (170)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             EEEEECCcHHHHHHHHHhcccceEEEeccchH
Confidence            59999999999999999998 88999998753

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=85.25  E-value=0.22  Score=40.07  Aligned_cols=31  Identities=23%  Similarity=0.467  Sum_probs=28.2

Q ss_pred             cEEEEC-CCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVG-GGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVG-sG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      -|.||| .|..|...|..|.+ |++|.+.++..
T Consensus        11 kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~   43 (152)
T d2pv7a2          11 KIVIVGGYGKLGGLFARYLRASGYPISILDRED   43 (152)
T ss_dssp             CEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred             eEEEEcCCCHHHHHHHHHHHHcCCCcEeccccc
Confidence            389999 79999999999998 89999998864

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=84.76  E-value=0.25  Score=41.72  Aligned_cols=30  Identities=30%  Similarity=0.281  Sum_probs=27.1

Q ss_pred             EEEECCCCchHHHHhhhhccCeeEEEecCC
Q 009873           56 YIVVGGGTTGCPLAATLSDNFSVLLVERGG   85 (523)
Q Consensus        56 vIIVGsG~aG~~~A~~Laeg~~VlvlE~G~   85 (523)
                      +.|||.|..|+++|..+++|++|+.+|-..
T Consensus         3 I~ViGlG~vGl~~a~~~a~g~~V~g~Din~   32 (196)
T d1dlja2           3 IAVAGSGYVGLSLGVLLSLQNEVTIVDILP   32 (196)
T ss_dssp             EEEECCSHHHHHHHHHHTTTSEEEEECSCH
T ss_pred             EEEECCChhHHHHHHHHHCCCcEEEEECCH
Confidence            689999999999999888899999999764

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=83.97  E-value=0.37  Score=38.94  Aligned_cols=35  Identities=14%  Similarity=0.169  Sum_probs=29.2

Q ss_pred             CCcccEEEECCCCchHHHHhhhhc-c-CeeEEEecCC
Q 009873           51 GKSFDYIVVGGGTTGCPLAATLSD-N-FSVLLVERGG   85 (523)
Q Consensus        51 ~~~~DvIIVGsG~aG~~~A~~Lae-g-~~VlvlE~G~   85 (523)
                      .+..-+.|||+|..|.++|+.|+. + .+++|++...
T Consensus         5 ~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~   41 (154)
T d1pzga1           5 QRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK   41 (154)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEecc
Confidence            445669999999999999999888 6 4899998654

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=83.94  E-value=0.3  Score=40.03  Aligned_cols=31  Identities=19%  Similarity=0.251  Sum_probs=26.5

Q ss_pred             cEEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      .|+|+|+|+.|+.++.-+.. |.+|+++|+.+
T Consensus        29 ~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~   60 (170)
T d1e3ja2          29 TVLVIGAGPIGLVSVLAAKAYGAFVVCTARSP   60 (170)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEEcccccchhhHhhHhhhcccccccchHH
Confidence            48999999999998876655 89999999875

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=83.36  E-value=0.28  Score=43.15  Aligned_cols=33  Identities=21%  Similarity=0.352  Sum_probs=28.9

Q ss_pred             cccEEEECCCCchHHHHhhhhc-c-CeeEEEecCC
Q 009873           53 SFDYIVVGGGTTGCPLAATLSD-N-FSVLLVERGG   85 (523)
Q Consensus        53 ~~DvIIVGsG~aG~~~A~~Lae-g-~~VlvlE~G~   85 (523)
                      +.-|+|||+|..|+.+|..|+. | .++.|+|-..
T Consensus        30 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~   64 (247)
T d1jw9b_          30 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   64 (247)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCcc
Confidence            3569999999999999999999 8 6899998654

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=82.86  E-value=0.36  Score=38.82  Aligned_cols=30  Identities=17%  Similarity=0.195  Sum_probs=28.0

Q ss_pred             EEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           56 YIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        56 vIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      +||+|.|-.|..+|..|.+ |.+|++||.-+
T Consensus         6 iII~G~g~~g~~l~~~L~~~~~~v~vId~d~   36 (153)
T d1id1a_           6 FIVCGHSILAINTILQLNQRGQNVTVISNLP   36 (153)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             EEEECCCHHHHHHHHHHHHcCCCEEEEeccc
Confidence            9999999999999999988 89999999764

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.93  E-value=0.42  Score=39.10  Aligned_cols=30  Identities=17%  Similarity=0.150  Sum_probs=25.6

Q ss_pred             EEEECCCCchHHHHhhhhc-cCeeEEEecCC
Q 009873           56 YIVVGGGTTGCPLAATLSD-NFSVLLVERGG   85 (523)
Q Consensus        56 vIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~   85 (523)
                      |+|+|+|+.|+.++.-+.. |.+|+++++.+
T Consensus        31 vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~   61 (168)
T d1piwa2          31 VGIVGLGGIGSMGTLISKAMGAETYVISRSS   61 (168)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTCEEEEEESSS
T ss_pred             EEEECCCCcchhHHHHhhhccccccccccch
Confidence            8999999999987766555 99999999865

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.88  E-value=0.4  Score=39.30  Aligned_cols=31  Identities=16%  Similarity=0.263  Sum_probs=26.4

Q ss_pred             cEEEECCCCchHHHHhhhhc-cC-eeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-NF-SVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g~-~VlvlE~G~   85 (523)
                      .|+|+|+|+.|+.++.-|.. |. +|+++|+.+
T Consensus        29 ~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~   61 (171)
T d1pl8a2          29 KVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSA   61 (171)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             EEEEECCCccHHHHHHHHHHcCCceEEeccCCH
Confidence            39999999999998877766 75 899999875

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=81.76  E-value=0.066  Score=46.97  Aligned_cols=33  Identities=12%  Similarity=0.178  Sum_probs=30.2

Q ss_pred             ccEEEECCCCchHHHHhhhhc-cCeeEEEecCCC
Q 009873           54 FDYIVVGGGTTGCPLAATLSD-NFSVLLVERGGS   86 (523)
Q Consensus        54 ~DvIIVGsG~aG~~~A~~Lae-g~~VlvlE~G~~   86 (523)
                      -.++|||+|..|+-+|..|++ |.+|.|+++.+.
T Consensus       181 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~r~~~  214 (233)
T d1djqa3         181 APRLIADATFTGHRVAREIEEANPQIAIPYKRET  214 (233)
T ss_dssp             SCCCHHHHHHHHHHHHHTTTSSCTTSCCCCCCCC
T ss_pred             CceeEecCchHHHHHHHHHHhcCCceEEEEeccc
Confidence            468999999999999999999 899999999873

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=81.35  E-value=0.57  Score=38.30  Aligned_cols=32  Identities=19%  Similarity=0.225  Sum_probs=27.8

Q ss_pred             ccEEEECCCCchHHHHhhhhc-c-CeeEEEecCC
Q 009873           54 FDYIVVGGGTTGCPLAATLSD-N-FSVLLVERGG   85 (523)
Q Consensus        54 ~DvIIVGsG~aG~~~A~~Lae-g-~~VlvlE~G~   85 (523)
                      -.|+|+|+|.++-++++.|.+ | .+|.|+-|..
T Consensus        18 ~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~   51 (167)
T d1npya1          18 AKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNV   51 (167)
T ss_dssp             SCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCH
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCCEEEEecccH
Confidence            469999999999999999998 8 5799987753

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=80.25  E-value=0.55  Score=37.47  Aligned_cols=31  Identities=19%  Similarity=0.381  Sum_probs=27.4

Q ss_pred             cEEEECCCCchHHHHhhhhc-c--CeeEEEecCC
Q 009873           55 DYIVVGGGTTGCPLAATLSD-N--FSVLLVERGG   85 (523)
Q Consensus        55 DvIIVGsG~aG~~~A~~Lae-g--~~VlvlE~G~   85 (523)
                      -+.|||+|-.|.++|+.|+. +  -+|.++|+..
T Consensus         7 KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~   40 (146)
T d1ez4a1           7 KVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK   40 (146)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCcEEEEeeccc
Confidence            59999999999999999998 6  5899999753