Citrus Sinensis ID: 009892

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520---
MRVALASTIKQNPLLLTISSFLYRPPTKTVSFRNIFTVNTTRNLGFLRCKATMSEQEPPRPVVVQVRDKIELTDTETKIFSCLLNTLRHFNLETVLRVAGGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETAPSGFGVIPSNPDQSKHLETATMKLYDLWIDFVNLRCEDYSENSRIPTMRFGTAEEDAYRRDLTINSLFYNINTSSVEDLTGRGIADLKHGKIVTPLPPKATFLDDPLRVLRAIRFGARFDFILDEELKKAAASDEVKAALAAKISRERVGTEIDLMVSGNQPVKAMTHICGLTLFWIVFKLPLQVEPEVLEGCEMFCTAYLDAAWDLTQLIGSSTFNDDQRRLSQYAALFLPFRNTTYKDNKGKKIPVVNYTFRDSLKRKASDAETVMNIHRVLEKFLSLIPSLVSAEDVKVNDGQWSKELVDVPDASKLRVLTGFLLREIKKFWRVALLISTLLYPTHVDHTEDMLNQHFQLDSKRDLFVAAEKAITKLGMVSIFFLYLI
ccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccEEEEEccHHHHHHcccccccEEEEEcccccHHHHHHHHHHHHHccccccccEEEcccccccccEEEEEEEEEccEEEEEEccccccccccccccccccccHHHHHHcccccHHHHccccccccEEccccccHHHHHcccccccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHcHHHHHHHHccccHHHHHHHHHHHHccccHHHHHHHHHHccccHHHccccccccHHHHHHHHHcHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccccEEcccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHccc
ccHHHHHHHHccccEEEcccccccccccccHHHHHcccccccccccccccccccccccccccEEcccccccccHHHHHHHHHHHHHHHHHccccEEEEEccHHHHHHccccccccEEEEccccHHHHHHHHHHHHHHHccEEEEEccEcccccccccEEEEEHEccccccccccccccccccccccccccccccHHHHHHHHccEEHEEEEcccccEEEEcccccHHHHHcccEEEEccccHcccccHHHHHHHHHHHHHccccccHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHcccHHHHHHHHHHccccccccccHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHEEEcc
MRVALAStikqnpllLTISsflyrpptktvsfrniftvnttrnlgflrckatmseqepprpvvvQVRDKIELTDTETKIFSCLLNTLRHFNLETVLRVAggwvrdkllgkdcyDIDIALDNMMGSEFATKVAEYLSatgetapsgfgvipsnpdqskhLETATMKLYDLWIDFVNLRcedysensriptmrfgtaeedayrrdltINSLfynintssvedltgrgiadlkhgkivtplppkatflddpLRVLRAIRFGARFDFILDEELKKAAASDEVKAALAAKISRERVGTEIDlmvsgnqpvkaMTHICGLTLFWIVFKlplqvepevlEGCEMFCTAYLDAAWDLTQligsstfnddQRRLSQYAALFlpfrnttykdnkgkkipvvnytfrdslkrkasdaETVMNIHRVLEKFLSLIpslvsaedvkvndgqwskelvdvpdasklrVLTGFLLREIKKFWRVALLISTllypthvdhteDMLNQHFQLDSKRDLFVAAEKAITKLGMVSIFFLYLI
mrvalastikqnpllltISSFlyrpptktvsfrniftvnttrnlGFLRCKatmseqepprpvvvQVRDKIELTDTETKIFSCLLNTLRHFNLETVLRvaggwvrdkllgKDCYDIDIALDNMMGSEFATKVAEYLSATGETAPSGFGVIPSNPDQSKHLETATMKLYDLWIDFVNLRCEdysensriptmrfgtaeedayRRDLTINSLFYNINTSSVEDLTGRGIAdlkhgkivtplppkatflddpLRVLRAIRFGARFDFILDEELKKAAASDEVKAALAakisrervgTEIDLMVSGNQPVKAMTHICGLTLFWIVFKLPLQVEPEVLEGCEMFCTAYLDAAWDLTQLIGSSTFNDDQRRLSQYAALFLpfrnttykdnkgkkipvvnytfrdslkrkasdaetVMNIHRVLEKFLSLIPSLVSaedvkvndgqwskelvdvpdasklRVLTGFLLREIKKFWRVALLISTLLYPTHVDHTEDMLNQHFQLDSKRDLFVAAEKAITKLGMVSIFFLYLI
MRVALASTIKQNPLLLTISSFLYRPPTKTVSFRNIFTVNTTRNLGFLRCKATMSeqepprpvvvqvrDKIELTDTETKIFSCLLNTLRHFNLETVLRVAGGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETAPSGFGVIPSNPDQSKHLETATMKLYDLWIDFVNLRCEDYSENSRIPTMRFGTAEEDAYRRDLTINSLFYNINTSSVEDLTGRGIADLKHGKIVTPLPPKATFLDDPLRVLRAIRFGARFDFILDEELKKAAASDEVKAALAAKISRERVGTEIDLMVSGNQPVKAMTHICGLTLFWIVFKLPLQVEPEVLEGCEMFCTAYLDAAWDLTQLIGSSTFNDDQRRLSQYAALFLPFRNTTYKDNKGKKIPVVNYTFRDSLKRKASDAETVMNIHRVLEKFLSLIPSLVSAEDVKVNDGQWSKELVDVPDASKLRVLTGFLLREIKKFWRVALLISTLLYPTHVDHTEDMLNQHFQLDSKRDLFVAAEKAITKLGMVSIFFLYLI
*******TIKQNPLLLTISSFLYRPPTKTVSFRNIFTVNTTRNLGFLRCKAT********PVVVQVRDKIELTDTETKIFSCLLNTLRHFNLETVLRVAGGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATG********************ETATMKLYDLWIDFVNLRCEDYSENSRIPTMRFGTAEEDAYRRDLTINSLFYNINTSSVEDLTGRGIADLKHGKIVTPLPPKATFLDDPLRVLRAIRFGARFDFILDEELKKAAASDEVKAALAAKISRERVGTEIDLMVSGNQPVKAMTHICGLTLFWIVFKLPLQVEPEVLEGCEMFCTAYLDAAWDLTQLIGSSTFNDDQRRLSQYAALFLPFRNTTYKDNKGKKIPVVNYTFRDSLKRKASDAETVMNIHRVLEKFLSLIPSLVSAEDVKVNDGQWSKELVDVPDASKLRVLTGFLLREIKKFWRVALLISTLLYPTHVDHTEDMLNQHFQLDSKRDLFVAAEKAITKLGMVSIFFLYL*
*********KQNPLLLT********************************************************DTETKIFSCLLNTLRHFNLETVLRVAGGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETAPSGFGVIPSNPDQSKHLETATMKLYDLWIDFVNLRCEDYSENSRIPTMRFGTAEEDAYRRDLTINSLFYNINTSSVEDLTGRGIADLKHGKIVTPLPPKATFLDDPLRVLRAIRFGARFDFILDEELKKAAASDEVKAALAAKISRERVGTEIDLMVSGNQPVKAMTHICGLTLFWIVFKLPLQVEPEVLEGCEMFCTAYLDAAWDLTQLIGSSTFNDDQRRLSQYAALFLPFRNTTYKDNKGKKIPVVNYTFRDSLKRKASDAETVMNIHRVLEKFLSLIPSLVSAEDVKVNDGQWSKELVDVPDASKLRVLTGFLLREIKKFWRVALLISTLLYPTHVDHTEDMLNQHFQLDSKRDLFVAAEKAITKLGMVSIFFLYLI
MRVALASTIKQNPLLLTISSFLYRPPTKTVSFRNIFTVNTTRNLGFLRCKATMSEQEPPRPVVVQVRDKIELTDTETKIFSCLLNTLRHFNLETVLRVAGGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETAPSGFGVIPSNPDQSKHLETATMKLYDLWIDFVNLRCEDYSENSRIPTMRFGTAEEDAYRRDLTINSLFYNINTSSVEDLTGRGIADLKHGKIVTPLPPKATFLDDPLRVLRAIRFGARFDFILDEELKKAAASDEVKAALAAKISRERVGTEIDLMVSGNQPVKAMTHICGLTLFWIVFKLPLQVEPEVLEGCEMFCTAYLDAAWDLTQLIGSSTFNDDQRRLSQYAALFLPFRNTTYKDNKGKKIPVVNYTFRDSLKRKASDAETVMNIHRVLEKFLSLIPSLVSAEDVKVNDGQWSKELVDVPDASKLRVLTGFLLREIKKFWRVALLISTLLYPTHVDHTEDMLNQHFQLDSKRDLFVAAEKAITKLGMVSIFFLYLI
*RVALASTIKQNPLLLTISSFLYRPPTKT*******************************PVVVQVRDKIELTDTETKIFSCLLNTLRHFNLETVLRVAGGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETAPSGFGVIPSNPDQSKHLETATMKLYD***************NSRIPTMRFGTAEEDAYRRDLTINSLFYNINTSSVEDLTGRGIADLKHGKIVTPLPPKATFLDDPLRVLRAIRFGARFDFILDEELKKAAASDEVKAALAAKISRERVGTEIDLMVSGNQPVKAMTHICGLTLFWIVFKLPLQVEPEVLEGCEMFCTAYLDAAWDLTQLIGSSTFNDDQRRLSQYAALFLPFRNTTYKDNKGKKIPVVNYTFRDSLKRKASDAETVMNIHRVLEKFLSLIPSLVSAEDVKVNDGQWSKELVDVPDASKLRVLTGFLLREIKKFWRVALLISTLLYPTHVDHTEDMLNQHFQLDSKRDLFVAAEKAITKLGMVSIFFLYLI
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MRVALASTIKQNPLLLTISSFLYRPPTKTVSFRNIFTVNTTRNLGFLRCKATMSEQEPPRPVVVQVRDKIELTDTETKIFSCLLNTLRHFNLETVLRVAGGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETAPSGFGVIPSNPDQSKHLETATMKLYDLWIDFVNLRCEDYSENSRIPTMRFGTAEEDAYRRDLTINSLFYNINTSSVEDLTGRGIADLKHGKIVTPLPPKATFLDDPLRVLRAIRFGARFDFILDEELKKAAASDEVKAALAAKISRERVGTEIDLMVSGNQPVKAMTHICGLTLFWIVFKLPLQVEPEVLEGCEMFCTAYLDAAWDLTQLIGSSTFNDDQRRLSQYAALFLPFRNTTYKDNKGKKIPVVNYTFRDSLKRKASDAETVMNIHRVLEKFLSLIPSLVSAEDVKVNDGQWSKELVDVPDASKLRVLTGFLLREIKKFWRVALLISTLLYPTHVDHTEDMLNQHFQLDSKRDLFVAAEKAITKLGMVSIFFLYLI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query523 2.2.26 [Sep-21-2011]
Q9P4S5531 CCA tRNA nucleotidyltrans yes no 0.478 0.470 0.473 9e-64
P21269546 CCA tRNA nucleotidyltrans yes no 0.478 0.457 0.486 2e-63
Q9Y7U9484 Putative CCA tRNA nucleot yes no 0.730 0.789 0.346 1e-55
Q9UTQ0500 Putative CCA tRNA nucleot no no 0.793 0.83 0.328 7e-54
Q88W02407 CCA-adding enzyme OS=Lact yes no 0.374 0.481 0.302 1e-14
A8FEH9400 CCA-adding enzyme OS=Baci yes no 0.399 0.522 0.303 2e-13
Q03S97397 CCA-adding enzyme OS=Lact yes no 0.374 0.493 0.311 4e-13
Q1WU19404 CCA-adding enzyme OS=Lact yes no 0.403 0.522 0.285 4e-13
Q03Y57401 CCA-adding enzyme OS=Leuc yes no 0.357 0.466 0.315 5e-12
B2G721403 CCA-adding enzyme OS=Lact yes no 0.374 0.486 0.284 1e-11
>sp|Q9P4S5|CCA1_CANGA CCA tRNA nucleotidyltransferase, mitochondrial OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=CCA1 PE=1 SV=2 Back     alignment and function desciption
 Score =  244 bits (624), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 125/264 (47%), Positives = 170/264 (64%), Gaps = 14/264 (5%)

Query: 69  KIELTDTETKIFSCLLNTLRHFNL------ETVLRVAGGWVRDKLLGKDCYDIDIALDNM 122
           +I+LT+ ET+I + L +   H+N          LR+ GGWVRDKLLG+  +D+DIA++ M
Sbjct: 14  RIQLTEKETRICNLLKDYTAHYNSLHYGQEPLTLRITGGWVRDKLLGQGSHDLDIAINIM 73

Query: 123 MGSEFATKVAEYLSATGE---TAPSGFGVIPSNPDQSKHLETATMKLYDLWIDFVNLRCE 179
            G EFAT +  YL    +     P     I  NP++SKHLETAT KL+D+ +DFVNLR E
Sbjct: 74  SGEEFATGLNGYLLEHFDKYGVKPHSIHKIDKNPEKSKHLETATTKLFDVEVDFVNLRSE 133

Query: 180 DYSENSRIPTMRFGTAEEDAYRRDLTINSLFYNINTSSVEDLTGRGIADLKHGKIVTPLP 239
           +Y+E+SRIPT +FGT EEDA RRD T+N+LFYNI   +VED T RG  DL+ G + TPLP
Sbjct: 134 EYTEDSRIPTTQFGTPEEDALRRDATLNALFYNIQQDAVEDFTKRGWQDLQDGVLRTPLP 193

Query: 240 PKATFLDDPLRVLRAIRFGARFDFILDEELKKAAASDEVKAALAAKISRERVGTEIDLMV 299
            + TFLDDPLRVLR IRF +RF+F ++  + K     E+  A   KISRER+G E++ ++
Sbjct: 194 ARQTFLDDPLRVLRLIRFASRFNFNIEAGVLKEMHDPEINEAFNNKISRERIGVEMEKIL 253

Query: 300 SGNQPVKAM-----THICGLTLFW 318
            G  P+  +     TH+  +   W
Sbjct: 254 VGPNPILGLKLIQRTHLENVIFLW 277
This enzyme carries out synthesis of the tRNA CCA terminus without the direction of a template using the multiple accepting and donating subsites within its active site.
Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 7EC: 2
>sp|P21269|CCA1_YEAST CCA tRNA nucleotidyltransferase, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CCA1 PE=1 SV=1 Back     alignment and function description
>sp|Q9Y7U9|CCA2_SCHPO Putative CCA tRNA nucleotidyltransferase 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC645.10 PE=3 SV=1 Back     alignment and function description
>sp|Q9UTQ0|CCA1_SCHPO Putative CCA tRNA nucleotidyltransferase 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1093.04c PE=3 SV=2 Back     alignment and function description
>sp|Q88W02|CCA_LACPL CCA-adding enzyme OS=Lactobacillus plantarum (strain ATCC BAA-793 / NCIMB 8826 / WCFS1) GN=cca PE=3 SV=1 Back     alignment and function description
>sp|A8FEH9|CCA_BACP2 CCA-adding enzyme OS=Bacillus pumilus (strain SAFR-032) GN=cca PE=3 SV=1 Back     alignment and function description
>sp|Q03S97|CCA_LACBA CCA-adding enzyme OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170) GN=cca PE=3 SV=1 Back     alignment and function description
>sp|Q1WU19|CCA_LACS1 CCA-adding enzyme OS=Lactobacillus salivarius (strain UCC118) GN=cca PE=3 SV=1 Back     alignment and function description
>sp|Q03Y57|CCA_LEUMM CCA-adding enzyme OS=Leuconostoc mesenteroides subsp. mesenteroides (strain ATCC 8293 / NCDO 523) GN=cca PE=3 SV=1 Back     alignment and function description
>sp|B2G721|CCA_LACRJ CCA-adding enzyme OS=Lactobacillus reuteri (strain JCM 1112) GN=cca PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query523
255586471577 poly(A) polymerase, putative [Ricinus co 0.977 0.885 0.676 0.0
224135935528 predicted protein [Populus trichocarpa] 0.894 0.886 0.710 0.0
449446353577 PREDICTED: CCA tRNA nucleotidyltransfera 0.948 0.859 0.660 0.0
449528369577 PREDICTED: CCA tRNA nucleotidyltransfera 0.875 0.793 0.698 0.0
359493248564 PREDICTED: CCA tRNA nucleotidyltransfera 0.942 0.874 0.638 0.0
296081108519 unnamed protein product [Vitis vinifera] 0.877 0.884 0.676 0.0
1139585560 tRNA nucleotidyltransferase [Lupinus alb 0.860 0.803 0.683 0.0
356576137575 PREDICTED: CCA tRNA nucleotidyltransfera 0.856 0.779 0.684 0.0
297845288603 hypothetical protein ARALYDRAFT_335508 [ 0.963 0.835 0.562 1e-155
15219925605 polynucleotide adenylyltransferase-like 0.866 0.748 0.594 1e-151
>gi|255586471|ref|XP_002533879.1| poly(A) polymerase, putative [Ricinus communis] gi|223526180|gb|EEF28510.1| poly(A) polymerase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  689 bits (1779), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/523 (67%), Positives = 411/523 (78%), Gaps = 12/523 (2%)

Query: 1   MRVALASTIKQNPLLLTISSFLYRPPTKTVSFRNIFTVNTTRNL-GFLR----CKATMSE 55
           MR  L + I   P+ L +   L R  T   +FRN F   T R L  FLR    C+A M  
Sbjct: 1   MRPYLNAAINLRPIQLLLPP-LLRSSTSAFAFRN-FRPETPRYLHSFLRRRFSCRA-MGT 57

Query: 56  QEPPRPVVVQVRDKIELTDTETKIFSCLLNTLRHFNLETVLRVAGGWVRDKLLGKDCYDI 115
             P    V+QV+DKIELT+ E KIF  LLNTLRHFNL+T LRVAGGWVRDKLLGKDCYDI
Sbjct: 58  STPQ--AVIQVKDKIELTEIEKKIFDRLLNTLRHFNLQTQLRVAGGWVRDKLLGKDCYDI 115

Query: 116 DIALDNMMGSEFATKVAEYLSATGETAPSGFGVIPSNPDQSKHLETATMKLYDLWIDFVN 175
           DIA+DNM+GSEF  KV EYL +TGE    G G+IP NPDQSKHLETA M+L+DLWIDFVN
Sbjct: 116 DIAIDNMLGSEFVDKVREYLLSTGEEV-GGLGIIPRNPDQSKHLETARMRLFDLWIDFVN 174

Query: 176 LRCEDYSENSRIPTMRFGTAEEDAYRRDLTINSLFYNINTSSVEDLTGRGIADLKHGKIV 235
           LRCEDY+E+SRIPTM+FGTAEEDA+RRDLTINSLFYNINTSSVEDLT RGI DLK GKIV
Sbjct: 175 LRCEDYTEDSRIPTMKFGTAEEDAFRRDLTINSLFYNINTSSVEDLTERGIEDLKFGKIV 234

Query: 236 TPLPPKATFLDDPLRVLRAIRFGARFDFILDEELKKAAASDEVKAALAAKISRERVGTEI 295
           TPLPPKATFLDDPLRVLRAIRFGARF FILDEELK+AAA D+VK ALAAKIS+ER+G EI
Sbjct: 235 TPLPPKATFLDDPLRVLRAIRFGARFGFILDEELKEAAACDDVKNALAAKISKERIGNEI 294

Query: 296 DLMVSGNQPVKAMTHICGLTLFWIVFKLPLQVEPEVLEGCEMFCTAYLDAAWDLTQLIGS 355
           DLM+SGNQPVKAMT+I  LTLFWI+F LP +VEP V EGC   C AYLDA W+L Q I S
Sbjct: 295 DLMLSGNQPVKAMTYIGDLTLFWIIFGLPPKVEPAVSEGCHKLCIAYLDATWNLIQSIRS 354

Query: 356 STFNDDQRRLSQYAALFLPFRNTTYKDNKGKKIPVVNYTFRDSLKRKASDAETVMNIHRV 415
           S F D+QRRLS YAALFLPFRN  Y + KGK +PVVN+ F+DSLK+KASD+ETVM IH+ 
Sbjct: 355 SFFTDEQRRLSLYAALFLPFRNIIYIE-KGKNVPVVNFIFKDSLKQKASDSETVMKIHKS 413

Query: 416 LEKFLSLIPSLVSAEDVKVNDGQWSKELVDVPDASKLRVLTGFLLREIKKFWRVALLIST 475
           LEKFL++IP L S +D +  +  W+ EL+DVP ++KLRVLTGFLLREIK FWRVALLIST
Sbjct: 414 LEKFLNIIPLLTSDDDTQPAEVDWALELIDVPFSAKLRVLTGFLLREIKDFWRVALLIST 473

Query: 476 LLYPTHVDHTEDMLNQHFQLDSKRDLFVAAEKAITKLGMVSIF 518
           ++YP  +D T+  L++ F+LD +++LF   E AITK G+  I+
Sbjct: 474 MIYPADIDSTQSFLDKQFELDKRKELFKTVEDAITKQGLEKIW 516

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224135935|ref|XP_002327340.1| predicted protein [Populus trichocarpa] gi|222835710|gb|EEE74145.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449446353|ref|XP_004140936.1| PREDICTED: CCA tRNA nucleotidyltransferase, mitochondrial-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449528369|ref|XP_004171177.1| PREDICTED: CCA tRNA nucleotidyltransferase, mitochondrial-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|359493248|ref|XP_002266551.2| PREDICTED: CCA tRNA nucleotidyltransferase, mitochondrial [Vitis vinifera] Back     alignment and taxonomy information
>gi|296081108|emb|CBI18302.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|1139585|gb|AAB03077.1| tRNA nucleotidyltransferase [Lupinus albus] Back     alignment and taxonomy information
>gi|356576137|ref|XP_003556190.1| PREDICTED: CCA tRNA nucleotidyltransferase, mitochondrial-like [Glycine max] Back     alignment and taxonomy information
>gi|297845288|ref|XP_002890525.1| hypothetical protein ARALYDRAFT_335508 [Arabidopsis lyrata subsp. lyrata] gi|297336367|gb|EFH66784.1| hypothetical protein ARALYDRAFT_335508 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15219925|ref|NP_173680.1| polynucleotide adenylyltransferase-like protein [Arabidopsis thaliana] gi|13877577|gb|AAK43866.1|AF370489_1 tRNA adenylyltransferase-like protein [Arabidopsis thaliana] gi|23198306|gb|AAN15680.1| tRNA adenylyltransferase-like protein [Arabidopsis thaliana] gi|332192145|gb|AEE30266.1| polynucleotide adenylyltransferase-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query523
TAIR|locus:2199675605 AT1G22660 [Arabidopsis thalian 0.858 0.742 0.602 2.1e-139
DICTYBASE|DDB_G0293504558 DDB_G0293504 "tRNA nucleotidyl 0.684 0.641 0.450 1.8e-71
CGD|CAL0004347547 orf19.4705 [Candida albicans ( 0.764 0.731 0.354 6.6e-58
SGD|S000000970546 CCA1 "ATP (CTP):tRNA-specific 0.478 0.457 0.486 2.2e-57
POMBASE|SPCC645.10484 SPCC645.10 "ATP(CTP) tRNA nucl 0.634 0.685 0.377 5.4e-57
ASPGD|ASPL0000066964605 AN10924 [Emericella nidulans ( 0.709 0.613 0.391 9.6e-57
GENEDB_PFALCIPARUM|PF11_0212 791 PF11_0212 "hypothetical protei 0.451 0.298 0.468 1.4e-54
UNIPROTKB|Q8IIG2 791 PF11_0212 "tRNA nucleotidyltra 0.451 0.298 0.468 1.4e-54
POMBASE|SPAC1093.04c500 SPAC1093.04c "tRNA nucleotidyl 0.692 0.724 0.350 1.2e-49
DICTYBASE|DDB_G0271378542 DDB_G0271378 [Dictyostelium di 0.550 0.531 0.300 3.3e-33
TAIR|locus:2199675 AT1G22660 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1364 (485.2 bits), Expect = 2.1e-139, P = 2.1e-139
 Identities = 280/465 (60%), Positives = 344/465 (73%)

Query:    68 DKIELTDTETKIFSCLLNTLRHFNLETVLRVAGGWVRDKLLGKDCYDIDIALDNMMGSEF 127
             + IELTD E KIF  LL+TLR+ NL+T LRVAGGWVRDKLLGK+  DIDIA+DNM GSEF
Sbjct:    82 ENIELTDKERKIFDRLLSTLRYCNLDTQLRVAGGWVRDKLLGKESDDIDIAIDNMSGSEF 141

Query:   128 ATKVAEYLSATGETAPSGFGVIPSNPDQSKHLETATMKLYDLWIDFVNLRCEDYSENSRI 187
               K  EYLS+  E    G  VI  NPDQSKHLETA +++YD WIDFVNLR E+Y+ENSRI
Sbjct:   142 LDKFKEYLSSRDEEV-QGDTVIERNPDQSKHLETAKLRIYDQWIDFVNLRSEEYTENSRI 200

Query:   188 PTMRFGTAEEDAYRRDLTINSLFYNINTSSVEDLTGRGIADLKHGKIVTPLPPKATFLDD 247
             PTM+FGTA++DA+RRDLTINSLFYNIN+ +VEDLT RGI DLK GKIVTPLP KATFLDD
Sbjct:   201 PTMKFGTAKDDAFRRDLTINSLFYNINSGAVEDLTERGIDDLKSGKIVTPLPAKATFLDD 260

Query:   248 PLRVLRAIRFGARFDFILDEELKKAAASDEVKAALAAKISRERVGTEIDLMVSGNQPVKA 307
             PLRVLRA+RFGARF F LDEELK+AA+S+EV+ AL  KISRER+G EIDLM+SGN PV A
Sbjct:   261 PLRVLRAVRFGARFGFTLDEELKEAASSEEVRVALGEKISRERIGNEIDLMISGNGPVSA 320

Query:   308 MTHICGLTLFWIVFKLPLQVEPEVLEGCEMFCTAYLDAAWDLTQLIGSSTFNDDQRRLSQ 367
             +T++  L LF +VF LP   EP   E C     +YL+A W L +      F+ +QRRL+ 
Sbjct:   321 VTYLSDLKLFSVVFALPSSAEPSPPENCGSLSQSYLEAMWSLLKTPRPGKFSGEQRRLAL 380

Query:   368 YAALFLPFRNTTYKDNKGKKIPVVNYTFRDSLKRKASDAETVMNIHRVLEKFLSLIPSLV 427
             YAA+FLPFR T YKD KGK IPVVN+ F+ S+KRK SDAETVMNIH+  E+F SLIPSL 
Sbjct:   381 YAAMFLPFRKTVYKDTKGKSIPVVNHIFKFSMKRKTSDAETVMNIHQTTERFRSLIPSLE 440

Query:   428 SAEDVKVNDGQWSKELVD-----------VPDASKLRVLTGFLLREIKKFWRVALLISTL 476
               +DV++++  W+ ++++           +P  SK+RVLTGFLLR+IK FWRV+LL S L
Sbjct:   441 VKKDVELDELTWAADILEHWKSITLNDPVIPATSKIRVLTGFLLRDIKDFWRVSLLTSLL 500

Query:   477 LYPTHVDHTEDM--LNQ-HFQLDSKRDLFVAAEKAITKLGMVSIF 518
             L  T VD + D   + Q  FQL+  R+ ++  E  I +LG+  I+
Sbjct:   501 LSAT-VDGSNDHQDIGQLDFQLERMRETYLTVEATIHELGLDKIW 544
GO:0003723 "RNA binding" evidence=IEA
GO:0004810 "tRNA adenylyltransferase activity" evidence=ISS
GO:0006396 "RNA processing" evidence=IEA
GO:0008033 "tRNA processing" evidence=ISS
GO:0009507 "chloroplast" evidence=ISM
GO:0016779 "nucleotidyltransferase activity" evidence=IEA
GO:0005739 "mitochondrion" evidence=IDA
GO:0009630 "gravitropism" evidence=RCA
DICTYBASE|DDB_G0293504 DDB_G0293504 "tRNA nucleotidyltransferase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
CGD|CAL0004347 orf19.4705 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
SGD|S000000970 CCA1 "ATP (CTP):tRNA-specific tRNA nucleotidyltransferase" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
POMBASE|SPCC645.10 SPCC645.10 "ATP(CTP) tRNA nucleotidyltransferase (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
ASPGD|ASPL0000066964 AN10924 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
GENEDB_PFALCIPARUM|PF11_0212 PF11_0212 "hypothetical protein" [Plasmodium falciparum (taxid:5833)] Back     alignment and assigned GO terms
UNIPROTKB|Q8IIG2 PF11_0212 "tRNA nucleotidyltransferase, putative" [Plasmodium falciparum 3D7 (taxid:36329)] Back     alignment and assigned GO terms
POMBASE|SPAC1093.04c SPAC1093.04c "tRNA nucleotidyltransferase (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0271378 DDB_G0271378 [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer2.7.7.21LOW CONFIDENCE prediction!
3rd Layer2.7.70.691
4th Layer2.7.7.25LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00410098
hypothetical protein (528 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query523
COG0617412 COG0617, PcnB, tRNA nucleotidyltransferase/poly(A) 1e-43
cd05398139 cd05398, NT_ClassII-CCAase, Nucleotidyltransferase 1e-38
pfam01743126 pfam01743, PolyA_pol, Poly A polymerase head domai 1e-32
TIGR02692466 TIGR02692, tRNA_CCA_actino, tRNA adenylyltransfera 8e-21
TIGR01942410 TIGR01942, pcnB, poly(A) polymerase 2e-19
PRK13299394 PRK13299, PRK13299, tRNA CCA-pyrophosphorylase; Pr 1e-17
PRK11623472 PRK11623, pcnB, poly(A) polymerase I; Provisional 2e-16
PRK10885409 PRK10885, cca, multifunctional tRNA nucleotidyl tr 4e-11
PRK13298417 PRK13298, PRK13298, tRNA CCA-pyrophosphorylase; Pr 2e-08
PRK13296360 PRK13296, PRK13296, tRNA CCA-pyrophosphorylase; Pr 2e-05
PRK13297364 PRK13297, PRK13297, tRNA CCA-pyrophosphorylase; Pr 6e-04
>gnl|CDD|223690 COG0617, PcnB, tRNA nucleotidyltransferase/poly(A) polymerase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
 Score =  159 bits (403), Expect = 1e-43
 Identities = 73/227 (32%), Positives = 104/227 (45%), Gaps = 24/227 (10%)

Query: 96  LRVAGGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETAPSGFGVIPSNPDQ 155
             + GG VRD LLG+   D+DIA +     E   K+       G      FG + + P  
Sbjct: 25  AYLVGGAVRDLLLGRPPKDVDIATNAT--PEEVKKLFRNTRPVGR----KFGTV-TVPFN 77

Query: 156 SKHLETATMKLYDLWIDFVNLRCEDYSENSRI-PTMRFGTAEEDAYRRDLTINSLFYNIN 214
            + +E  T             R E Y  N R  P +  GT EED  RRD TIN+L Y+  
Sbjct: 78  GEIIEVTT------------FRKEGYGYNGRPLPVVFPGTLEEDLKRRDFTINALAYDPE 125

Query: 215 TSSVEDLTGRGIADLKHGKIVTPLPPKATFLDDPLRVLRAIRFGARFDFILDEELKKAAA 274
              + D  G G+ DL++  +         F +DPLR+LRA RF AR  F ++ E ++A  
Sbjct: 126 DGEIIDPFG-GLKDLENRVLRHIGDASERFREDPLRILRAARFAARLGFTIEPETEEAIR 184

Query: 275 SDEVKAALAAKISRERVGTEIDLMVSGNQPVKAMTHICGLTLFWIVF 321
                A L AKISRER+  E+  ++    P +A+  +       I+F
Sbjct: 185 L---MAPLLAKISRERLWDELKKLLLSPNPREALQLLREYGALKILF 228

Length = 412
>gnl|CDD|143388 cd05398, NT_ClassII-CCAase, Nucleotidyltransferase (NT) domain of ClassII CCA-adding enzymes Back     alignment and domain information
>gnl|CDD|216675 pfam01743, PolyA_pol, Poly A polymerase head domain Back     alignment and domain information
>gnl|CDD|131739 TIGR02692, tRNA_CCA_actino, tRNA adenylyltransferase Back     alignment and domain information
>gnl|CDD|130997 TIGR01942, pcnB, poly(A) polymerase Back     alignment and domain information
>gnl|CDD|237339 PRK13299, PRK13299, tRNA CCA-pyrophosphorylase; Provisional Back     alignment and domain information
>gnl|CDD|236939 PRK11623, pcnB, poly(A) polymerase I; Provisional Back     alignment and domain information
>gnl|CDD|182810 PRK10885, cca, multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase; Reviewed Back     alignment and domain information
>gnl|CDD|237338 PRK13298, PRK13298, tRNA CCA-pyrophosphorylase; Provisional Back     alignment and domain information
>gnl|CDD|106256 PRK13296, PRK13296, tRNA CCA-pyrophosphorylase; Provisional Back     alignment and domain information
>gnl|CDD|139469 PRK13297, PRK13297, tRNA CCA-pyrophosphorylase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 523
TIGR02692466 tRNA_CCA_actino tRNA adenylyltransferase. The enzy 100.0
KOG2159416 consensus tRNA nucleotidyltransferase/poly(A) poly 100.0
PRK10885409 cca multifunctional tRNA nucleotidyl transferase/2 100.0
PRK13299394 tRNA CCA-pyrophosphorylase; Provisional 100.0
PRK11623472 pcnB poly(A) polymerase I; Provisional 100.0
TIGR01942410 pcnB poly(A) polymerase. This model describes the 100.0
PRK13298417 tRNA CCA-pyrophosphorylase; Provisional 100.0
COG0617412 PcnB tRNA nucleotidyltransferase/poly(A) polymeras 100.0
PRK13297364 tRNA CCA-pyrophosphorylase; Provisional 100.0
PRK13296360 tRNA CCA-pyrophosphorylase; Provisional 100.0
cd05398139 NT_ClassII-CCAase Nucleotidyltransferase (NT) doma 100.0
PF01743126 PolyA_pol: Poly A polymerase head domain; InterPro 100.0
PRK00227 693 glnD PII uridylyl-transferase; Provisional 99.89
PRK03381 774 PII uridylyl-transferase; Provisional 99.89
PRK00275 895 glnD PII uridylyl-transferase; Provisional 99.87
TIGR01693 850 UTase_glnD [Protein-PII] uridylyltransferase. This 99.86
PRK03059 856 PII uridylyl-transferase; Provisional 99.86
PRK05092 931 PII uridylyl-transferase; Provisional 99.85
PRK01759 854 glnD PII uridylyl-transferase; Provisional 99.84
PRK05007 884 PII uridylyl-transferase; Provisional 99.79
PHA01806200 hypothetical protein 99.78
PRK04374 869 PII uridylyl-transferase; Provisional 99.75
COG2844 867 GlnD UTP:GlnB (protein PII) uridylyltransferase [P 99.74
PF1262764 PolyA_pol_RNAbd: Probable RNA and SrmB- binding si 99.1
cd07749156 NT_Pol-beta-like_1 Nucleotidyltransferase (NT) dom 94.32
PF06042163 DUF925: Bacterial protein of unknown function (DUF 93.62
cd05402114 NT_PAP_TUTase Nucleotidyltransferase (NT) domain o 93.42
COG3575184 Uncharacterized protein conserved in bacteria [Fun 91.67
PF10706174 Aminoglyc_resit: Aminoglycoside-2''-adenylyltransf 91.55
cd0539749 NT_Pol-beta-like Nucleotidyltransferase (NT) domai 88.64
PRK13480314 3'-5' exoribonuclease YhaM; Provisional 87.66
PF09970181 DUF2204: Nucleotidyl transferase of unknown functi 86.44
PF14792112 DNA_pol_B_palm: DNA polymerase beta palm ; PDB: 1R 85.45
PF01966122 HD: HD domain; InterPro: IPR006674 This domain is 85.07
PRK13300447 tRNA CCA-pyrophosphorylase; Provisional 85.02
TIGR03401228 cyanamide_fam HD domain protein, cyanamide hydrata 84.19
COG1418222 Predicted HD superfamily hydrolase [General functi 80.51
>TIGR02692 tRNA_CCA_actino tRNA adenylyltransferase Back     alignment and domain information 
Probab=100.00  E-value=2.3e-59  Score=505.64  Aligned_cols=344  Identities=24%  Similarity=0.315  Sum_probs=273.7

Q ss_pred             HHHHHHHHHHhcCCCCeEEEEchHHHHHHcCCCCCCeEEEEcCCChHHHHHHHHHHHHhcCCccCCceEEecCCCCCCcc
Q 009892           79 IFSCLLNTLRHFNLETVLRVAGGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETAPSGFGVIPSNPDQSKH  158 (523)
Q Consensus        79 i~~~l~~~~~~~~~~~~~yiVGG~VRD~LLg~~~~DiDi~~~~~~~~~f~~~l~~~l~~~g~~~~~~~~vi~~n~~~~k~  158 (523)
                      .+..+.+.++..  |+++|+|||||||.|||++|+|+||+|++. ++++++.+.++..    .      ++..    ++.
T Consensus        15 ~~~~i~~~l~~~--g~~~y~VGG~VRD~llg~~~~D~Di~~~~~-~~~~~~~~~~~~~----~------~~~~----g~~   77 (466)
T TIGR02692        15 LLAPLAAAFAAA--GHELYLVGGSVRDALLGRLGHDLDFTTDAR-PEETLAILRPWAD----A------VWDT----GIA   77 (466)
T ss_pred             HHHHHHHHHHhC--CCEEEEeCcHHHHHHcCCCCCCEEEEeCCC-HHHHHHHHHHhhh----h------cccc----Ccc
Confidence            344444555555  578999999999999999999999999985 7777776654321    1      1111    345


Q ss_pred             eeeEEEEEcCeEEEeeecccccccCCCCCcccccC-CHHHHHhcCCCCccceeeecCCC---ceecCccccHHHhhcCce
Q 009892          159 LETATMKLYDLWIDFVNLRCEDYSENSRIPTMRFG-TAEEDAYRRDLTINSLFYNINTS---SVEDLTGRGIADLKHGKI  234 (523)
Q Consensus       159 ~~t~~~~~~g~~iD~~~~R~e~y~~~~r~p~v~~g-t~~eDl~RRDFTINAla~~l~~~---~i~D~~g~G~~DL~~g~I  234 (523)
                      ++|+++...|..+||+++|+|.|..+++.|+|+++ ++++||.||||||||||||++++   .++||+| |++||++|+|
T Consensus        78 ~g~~~v~~~~~~~ei~~~r~e~~~~~~~~~~v~~~~~i~~Dl~rRDFTiNA~a~~~~~~~~g~l~D~~~-G~~Dl~~~~i  156 (466)
T TIGR02692        78 FGTVGAEKDGQQIEITTFRSDSYDGTSRKPEVTFGDTLEGDLIRRDFTVNAMAVRIPADGSLEFHDPVG-GLDDLLAKVL  156 (466)
T ss_pred             cceEEEEECCcEEEEEecccccCcCCCCCCcccCCCCHHHHHHhccccHHHhhccccCCCCceeecCCC-cHHHHhCCce
Confidence            78999999999999999999999999999999985 89999999999999999999875   8999998 9999999999


Q ss_pred             ecCCCCCCCCccCHHHHHHHHHHHhhcCCCCcHHHHHHHHhhHHHHHHhccccHHHHHHHHHHhhcCCCHHHHHHHHHHc
Q 009892          235 VTPLPPKATFLDDPLRVLRAIRFGARFDFILDEELKKAAASDEVKAALAAKISRERVGTEIDLMVSGNQPVKAMTHICGL  314 (523)
Q Consensus       235 R~~~~p~~~F~eDPLRiLRa~RFAarlgf~id~~t~~ai~~~~~~~~l~~~is~ERI~~El~kiL~~~~~~~~L~lL~~~  314 (523)
                      |++++|.++|.|||+||||++|||+++||+|+++|.++|+..   ..++..++.|||+.||.++|.++++..+++.|+++
T Consensus       157 r~v~~~~~~f~eDPlRiLRa~Rfaa~lgf~i~~~T~~~i~~~---~~~l~~i~~eRi~~E~~kil~~~~~~~~l~~l~~~  233 (466)
T TIGR02692       157 DTPATPEQSFGDDPLRMLRAARFVSQLGFEVAPRVRAAMTEM---ADQIERISAERVRVELDKLLLGDHPRAGIDLMVET  233 (466)
T ss_pred             EecCChHHhhhhChHHHHHHHHHHHHhCCCcCHHHHHHHHHH---HHHHhcCCHHHHHHHHHHHHcCCCcHHHHHHHHhh
Confidence            999999999999999999999999999999999999999875   44567899999999999999999999999999999


Q ss_pred             CchhHHhhCCCCCchhhhhhccccccchhhhHH-HHHHHhhcc-CCCcc-chhHHHHhcccccccccccc----CCC---
Q 009892          315 TLFWIVFKLPLQVEPEVLEGCEMFCTAYLDAAW-DLTQLIGSS-TFNDD-QRRLSQYAALFLPFRNTTYK----DNK---  384 (523)
Q Consensus       315 glL~~if~~Pe~~~~~~~~~~~q~~~~h~~tvd-h~l~~l~~~-~~~~e-~~~ll~LAaLlhpi~k~~~~----~~~---  384 (523)
                      |+|..+|  |++. .  .. ..|...||.+++| |++.++... .+... ....+.|||||||+||+...    +++   
T Consensus       234 glL~~~~--Pe~~-~--~~-~~~~~~~h~~~v~~Htl~vl~~~~~l~~~~~~~~l~lAaLLHDiGK~~t~~~~~~g~~~f  307 (466)
T TIGR02692       234 GLADRVL--PEIP-A--LR-LEIDEHHQHKDVYEHSLTVLRQAIDLEDDGPDLVLRWAALLHDIGKPATRRFEPDGRVSF  307 (466)
T ss_pred             hhhhhcC--chHH-H--Hh-cccccCCCCCcHHHHHHHHHHHHHhccccccCHHHHHHHHHhhccCCCCcccccCCCccc
Confidence            9999999  9963 1  12 4466788889998 998887643 12212 23367899999999998542    111   


Q ss_pred             -CCCchhHHHHHHHHhcC---CCCCHHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccCCCcchhhHHHHhHHH
Q 009892          385 -GKKIPVVNYTFRDSLKR---KASDAETVMNIHRVLEKFLSLIPSLVSAEDVKVNDGQWSKELVDVPDASKLRVLTGFLL  460 (523)
Q Consensus       385 -~h~~~~~a~iare~Lk~---~~~d~~~v~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~R~~~G~~i  460 (523)
                       +| ..+|+.++++.|++   ++...+.|.+++++|..+....    +                    ...+...+..++
T Consensus       308 ~gH-~~~Ga~~a~~iL~rLk~s~~~~~~V~~LV~~H~~~~~~~----~--------------------~~~~~~~v~r~~  362 (466)
T TIGR02692       308 HHH-EVVGAKMVRKRMRALKYSKQMVEDVSRLVELHLRFHGYG----D--------------------GQWTDSAVRRYV  362 (466)
T ss_pred             CcH-HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCchhhcc----c--------------------CCCCHHHHHHHH
Confidence             34 57899999887775   6667777778888886432110    0                    012345667888


Q ss_pred             HHhcchhHHHHHHH
Q 009892          461 REIKKFWRVALLIS  474 (523)
Q Consensus       461 r~~~~~W~~~~~~~  474 (523)
                      ++.|..|...++++
T Consensus       363 ~~~g~~l~~L~~L~  376 (466)
T TIGR02692       363 RDAGPLLPRLHKLV  376 (466)
T ss_pred             HHhhhhHHHHHHHH
Confidence            99988776555544

The enzyme tRNA adenylyltransferase, also called tRNA-nucleotidyltransferase and CCA-adding enzyme, can add or repair the required CCA triplet at the 3'-end of tRNA molecules. Genes encoding tRNA include the CCA tail in some but not all bacteria, and this enzyme may be required for viability. Members of this family represent a distinct clade within the larger family pfam01743 (tRNA nucleotidyltransferase/poly(A) polymerase family protein). The example from Streptomyces coelicolor was shown to act as a CCA-adding enzyme and not as a poly(A) polymerase.
>KOG2159 consensus tRNA nucleotidyltransferase/poly(A) polymerase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK10885 cca multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase; Reviewed Back     alignment and domain information
>PRK13299 tRNA CCA-pyrophosphorylase; Provisional Back     alignment and domain information
>PRK11623 pcnB poly(A) polymerase I; Provisional Back     alignment and domain information
>TIGR01942 pcnB poly(A) polymerase Back     alignment and domain information
>PRK13298 tRNA CCA-pyrophosphorylase; Provisional Back     alignment and domain information
>COG0617 PcnB tRNA nucleotidyltransferase/poly(A) polymerase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK13297 tRNA CCA-pyrophosphorylase; Provisional Back     alignment and domain information
>PRK13296 tRNA CCA-pyrophosphorylase; Provisional Back     alignment and domain information
>cd05398 NT_ClassII-CCAase Nucleotidyltransferase (NT) domain of ClassII CCA-adding enzymes Back     alignment and domain information
>PF01743 PolyA_pol: Poly A polymerase head domain; InterPro: IPR002646 This group includes nucleic acid independent RNA polymerases, such as polynucleotide adenylyltransferase (2 Back     alignment and domain information
>PRK00227 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK03381 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK00275 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase Back     alignment and domain information
>PRK03059 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK05092 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK01759 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK05007 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PHA01806 hypothetical protein Back     alignment and domain information
>PRK04374 PII uridylyl-transferase; Provisional Back     alignment and domain information
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF12627 PolyA_pol_RNAbd: Probable RNA and SrmB- binding site of polymerase A; PDB: 1OU5_B 3H38_A 3H3A_B 3H39_B 3H37_A 3AQN_A 3AQK_A 3AQM_B 3AQL_B 1MIY_A Back     alignment and domain information
>cd07749 NT_Pol-beta-like_1 Nucleotidyltransferase (NT) domain of an uncharacterized subgroup of the Pol beta-like NT superfamily Back     alignment and domain information
>PF06042 DUF925: Bacterial protein of unknown function (DUF925); InterPro: IPR009267 This entry consists of several hypothetical bacterial proteins of unknown function Back     alignment and domain information
>cd05402 NT_PAP_TUTase Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases Back     alignment and domain information
>COG3575 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF10706 Aminoglyc_resit: Aminoglycoside-2''-adenylyltransferase; InterPro: IPR019646 Aminoglycoside-2''-adenylyltransferase is conserved in Bacteria Back     alignment and domain information
>cd05397 NT_Pol-beta-like Nucleotidyltransferase (NT) domain of DNA polymerase beta and similar proteins Back     alignment and domain information
>PRK13480 3'-5' exoribonuclease YhaM; Provisional Back     alignment and domain information
>PF09970 DUF2204: Nucleotidyl transferase of unknown function (DUF2204); InterPro: IPR018700 This family of hypothetical prokaryotic proteins has no known function Back     alignment and domain information
>PF14792 DNA_pol_B_palm: DNA polymerase beta palm ; PDB: 1RZT_A 3PML_A 2PFN_A 3HX0_K 3HWT_A 2GWS_E 2BCQ_A 3UPQ_A 2BCS_A 3UQ2_A Back     alignment and domain information
>PF01966 HD: HD domain; InterPro: IPR006674 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity [] Back     alignment and domain information
>PRK13300 tRNA CCA-pyrophosphorylase; Provisional Back     alignment and domain information
>TIGR03401 cyanamide_fam HD domain protein, cyanamide hydratase family Back     alignment and domain information
>COG1418 Predicted HD superfamily hydrolase [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query523
3h38_A441 The Structure Of Cca-Adding Enzyme Apo Form Ii Leng 2e-17
3h37_A441 The Structure Of Cca-Adding Enzyme Apo Form I Lengt 9e-17
1vfg_A390 Crystal Structure Of Trna Nucleotidyltransferase Co 8e-16
3aql_A415 Structure Of Bacterial Protein (Apo Form Ii) Length 4e-12
3aqm_A415 Structure Of Bacterial Protein (Form Ii) Length = 4 4e-12
3aqk_A414 Structure Of Bacterial Protein (Apo Form I) Length 4e-12
1ou5_A448 Crystal Structure Of Human Cca-Adding Enzyme Length 8e-11
1miy_A404 Crystal Structure Of Bacillus Stearothermophilus Cc 5e-07
1miv_A404 Crystal Structure Of Bacillus Stearothermophilus Cc 1e-05
>pdb|3H38|A Chain A, The Structure Of Cca-Adding Enzyme Apo Form Ii Length = 441 Back     alignment and structure 
Iteration: 1

 Score = 87.0 bits (214), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/219 (31%), Positives = 104/219 (47%), Gaps = 23/219 (10%)
Query: 98  VAGGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETAPSGFGVIPSNPDQSK 157
           V GG+VRD LLG    DIDI ++       A + AEY              +P    +  
Sbjct: 39  VVGGFVRDLLLGIKNLDIDIVVEGN-----ALEFAEYAKR----------FLPGKLVKHD 83
Query: 158 HLETATMKLYD-LWIDFVNLRCEDYSENSRIPTMRFGTAEEDAYRRDLTINSLFYNINTS 216
              TA++ L   L ID    R E Y   +++P +   T ++D YRRD TIN++   +N  
Sbjct: 84  KFMTASLFLKGGLRIDIATARLEYYESPAKLPDVEMSTIKKDLYRRDFTINAMAIKLNPK 143
Query: 217 S---VEDLTGRGIADLKHGKIVTPLPPKATFLDDPLRVLRAIRFGARFDFILDEELKKAA 273
               + D  G G  DLK G  V  +    +F+DDP R+LRAIRF  RFDF + EE  +  
Sbjct: 144 DFGLLIDFFG-GYRDLKEG--VIRVLHTLSFVDDPTRILRAIRFEQRFDFRI-EETTERL 199
Query: 274 ASDEVKAALAAKISRERVGTEIDLMVSGNQPVKAMTHIC 312
               V+     + +  R+  E++ ++    P+K++  + 
Sbjct: 200 LKQAVEEGYLERTTGPRLRQELEKILEEKNPLKSIRRMA 238
>pdb|3H37|A Chain A, The Structure Of Cca-Adding Enzyme Apo Form I Length = 441 Back     alignment and structure
>pdb|1VFG|A Chain A, Crystal Structure Of Trna Nucleotidyltransferase Complexed With A Primer Trna And An Incoming Atp Analog Length = 390 Back     alignment and structure
>pdb|3AQL|A Chain A, Structure Of Bacterial Protein (Apo Form Ii) Length = 415 Back     alignment and structure
>pdb|3AQM|A Chain A, Structure Of Bacterial Protein (Form Ii) Length = 415 Back     alignment and structure
>pdb|3AQK|A Chain A, Structure Of Bacterial Protein (Apo Form I) Length = 414 Back     alignment and structure
>pdb|1OU5|A Chain A, Crystal Structure Of Human Cca-Adding Enzyme Length = 448 Back     alignment and structure
>pdb|1MIY|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Cca-adding Enzyme In Complex With Ctp Length = 404 Back     alignment and structure
>pdb|1MIV|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Cca-Adding Enzyme Length = 404 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query523
3h38_A441 TRNA nucleotidyl transferase-related protein; tran 2e-43
1vfg_A390 A-adding enzyme, poly A polymerase; transferase, R 1e-42
1miw_A404 TRNA CCA-adding enzyme; tRNA nucleotidyltransferas 1e-35
3aql_A415 Poly(A) polymerase; transferase/RNA, ATP-binding, 1e-31
1ou5_A448 TRNA CCA-adding enzyme, tRNA-nucleotidyltransferas 2e-27
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>3h38_A TRNA nucleotidyl transferase-related protein; transferase/RNA, nucleotide-binding, RNA-binding; 2.37A {Thermotoga maritima} PDB: 3h37_A 3h39_A* 3h3a_A* Length = 441 Back     alignment and structure
 Score =  159 bits (403), Expect = 2e-43
 Identities = 68/228 (29%), Positives = 104/228 (45%), Gaps = 23/228 (10%)

Query: 98  VAGGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETAPSGFGVIPSNPDQSK 157
           V GG+VRD LLG    DIDI ++     EFA     +L          F           
Sbjct: 39  VVGGFVRDLLLGIKNLDIDIVVEGN-ALEFAEYAKRFLPGKLVKHDK-FM---------- 86

Query: 158 HLETATMKLYD-LWIDFVNLRCEDYSENSRIPTMRFGTAEEDAYRRDLTINSLFYNINTS 216
              TA++ L   L ID    R E Y   +++P +   T ++D YRRD TIN++   +N  
Sbjct: 87  ---TASLFLKGGLRIDIATARLEYYESPAKLPDVEMSTIKKDLYRRDFTINAMAIKLNPK 143

Query: 217 SVE---DLTGRGIADLKHGKIVTPLPPKATFLDDPLRVLRAIRFGARFDFILDEELKKAA 273
                 D  G G  DLK G I        +F+DDP R+LRAIRF  RFDF ++E  ++  
Sbjct: 144 DFGLLIDFFG-GYRDLKEGVIRV--LHTLSFVDDPTRILRAIRFEQRFDFRIEETTER-L 199

Query: 274 ASDEVKAALAAKISRERVGTEIDLMVSGNQPVKAMTHICGLTLFWIVF 321
               V+     + +  R+  E++ ++    P+K++  +    +   +F
Sbjct: 200 LKQAVEEGYLERTTGPRLRQELEKILEEKNPLKSIRRMAQFDVIKHLF 247
>1vfg_A A-adding enzyme, poly A polymerase; transferase, RNA, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: APC; 2.80A {Aquifex aeolicus} SCOP: a.173.1.1 d.218.1.4 Length = 390 Back     alignment and structure
>1miw_A TRNA CCA-adding enzyme; tRNA nucleotidyltransferase, translation, transferase; HET: ATP; 3.00A {Geobacillus stearothermophilus} SCOP: a.173.1.1 d.218.1.4 PDB: 1miv_A* 1miy_A* Length = 404 Back     alignment and structure
>3aql_A Poly(A) polymerase; transferase/RNA, ATP-binding, nucleotide-binding, RNA-bindin transferase, nucleotidyltransferase, ATP binding, A-phospho; 3.00A {Escherichia coli} PDB: 3aqn_A* 3aqk_A 3aqm_A Length = 415 Back     alignment and structure
>1ou5_A TRNA CCA-adding enzyme, tRNA-nucleotidyltransferase; polymerase, translation; 3.40A {Homo sapiens} SCOP: a.173.1.1 d.218.1.4 Length = 448 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query523
3aql_A415 Poly(A) polymerase; transferase/RNA, ATP-binding, 100.0
3h38_A441 TRNA nucleotidyl transferase-related protein; tran 100.0
1vfg_A390 A-adding enzyme, poly A polymerase; transferase, R 100.0
1ou5_A448 TRNA CCA-adding enzyme, tRNA-nucleotidyltransferas 100.0
1miw_A404 TRNA CCA-adding enzyme; tRNA nucleotidyltransferas 100.0
2la3_A191 Uncharacterized protein; ATP binding, CTP binding, 93.02
4e8j_A161 Lincosamide resistance protein; structural genomic 92.32
3djb_A223 Hydrolase, HD family; all alpha-helical protein., 90.2
3dto_A223 BH2835 protein; all alpha-helical protein, structu 89.21
2fcl_A169 Hypothetical protein TM1012; putative nucleotidylt 89.08
3b57_A209 LIN1889 protein; Q92AN1, X-RAY, NESG, structural g 88.92
3nyb_A323 Poly(A) RNA polymerase protein 2; polya RNA polyme 87.57
2qgs_A225 Protein Se1688; alpha-helical protein, structural 86.69
2pq7_A220 Predicted HD superfamily hydrolase; 104161995, HD 86.49
3gw7_A239 Uncharacterized protein YEDJ; all alpha-helical pr 85.62
2pjq_A231 Uncharacterized protein LP_2664; LPR71, NESG, stru 83.99
>3aql_A Poly(A) polymerase; transferase/RNA, ATP-binding, nucleotide-binding, RNA-bindin transferase, nucleotidyltransferase, ATP binding, A-phospho; 3.00A {Escherichia coli} PDB: 3aqn_A* 3aqk_A 3aqm_A Back     alignment and structure
Probab=100.00  E-value=2.1e-57  Score=481.60  Aligned_cols=316  Identities=22%  Similarity=0.309  Sum_probs=248.4

Q ss_pred             ccceecChhhHHHHHHHHHHHHhcCCCCeEEEEchHHHHHHcCCCCCCeEEEEcCCChHHHHHHHHHHHHhcCCccCCce
Q 009892           67 RDKIELTDTETKIFSCLLNTLRHFNLETVLRVAGGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETAPSGF  146 (523)
Q Consensus        67 ~~~i~l~~~e~~i~~~l~~~~~~~~~~~~~yiVGG~VRD~LLg~~~~DiDi~~~~~~~~~f~~~l~~~l~~~g~~~~~~~  146 (523)
                      .....+++...+|++.|.    .  .|+++|+|||||||+|||++|+|+||+|++. ++++++.+.    ..     .  
T Consensus        12 i~~~~~~~~~~~v~~~l~----~--~G~~~ylVGG~VRD~LLg~~~~D~Di~t~a~-p~~~~~~f~----~~-----~--   73 (415)
T 3aql_A           12 ISRKDISENALKVMYRLN----K--AGYEAWLVGGGVRDLLLGKKPKDFDVTTNAT-PEQVRKLFR----NC-----R--   73 (415)
T ss_dssp             CCCGGGSCSCHHHHHHHH----H--TTCCEEEETHHHHHHHHSSCCSCCEEEESSC-HHHHHHHTT----TS-----C--
T ss_pred             cChHhCCHHHHHHHHHHH----H--CCCeEEEECHHHHHHHcCCCCCCEEEEcCCC-HHHHHHHhh----hC-----e--
Confidence            355678888888887763    3  3688999999999999999999999999985 777655432    10     0  


Q ss_pred             EEecCCCCCCcceeeEEEEEcCeEEEeeeccccccc-----------CCCCCc-ccccCCHHHHHhcCCCCccceeeecC
Q 009892          147 GVIPSNPDQSKHLETATMKLYDLWIDFVNLRCEDYS-----------ENSRIP-TMRFGTAEEDAYRRDLTINSLFYNIN  214 (523)
Q Consensus       147 ~vi~~n~~~~k~~~t~~~~~~g~~iD~~~~R~e~y~-----------~~~r~p-~v~~gt~~eDl~RRDFTINAla~~l~  214 (523)
                       .+      ++.|+|+++.+.+..+|++++|+|.|.           .+|+++ .+.+||+++||.||||||||||||+.
T Consensus        74 -~~------g~~f~~~~v~~~~~~~ev~t~R~~~~~~~~~~~~~~~~~~g~~~~~~~~~tl~eDl~RRDFTINAla~~~~  146 (415)
T 3aql_A           74 -LV------GRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQRRDFTINSLYYSVA  146 (415)
T ss_dssp             -CC------CCSSSCCEEESSSCEEEEEECCC-----------------------CCCCCHHHHHTTSSBSGGGCEEETT
T ss_pred             -Ee------cccCCEEEEEECCcEEEEeeecccccccccccccccccCCCcccccccCCCHHHHHhcCCccceeEEEeCC
Confidence             11      345688888888889999999998763           245553 36789999999999999999999999


Q ss_pred             CCceecCccccHHHhhcCceecCCCCCCCCccCHHHHHHHHHHHhhcCCCCcHHHHHHHHhhHHHHHHhccccHHHHHHH
Q 009892          215 TSSVEDLTGRGIADLKHGKIVTPLPPKATFLDDPLRVLRAIRFGARFDFILDEELKKAAASDEVKAALAAKISRERVGTE  294 (523)
Q Consensus       215 ~~~i~D~~g~G~~DL~~g~IR~~~~p~~~F~eDPLRiLRa~RFAarlgf~id~~t~~ai~~~~~~~~l~~~is~ERI~~E  294 (523)
                      ++.++||+| |++||++|+||++++|.++|.|||+||||+||||+++||.|+++|.++|++.   ..++..+|.||++.|
T Consensus       147 ~~~l~D~~g-G~~DL~~~~Ir~v~~p~~~F~eDPlRiLRa~Rfaarlgf~i~~~T~~ai~~~---~~~l~~is~eRi~~E  222 (415)
T 3aql_A          147 DFTVRDYVG-GMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGMRISPETAEPIPRL---ATLLNDIPPAHLFEE  222 (415)
T ss_dssp             TCCEECSSS-HHHHHHHTEECBSSCHHHHHHHCTHHHHHHHHHHHHTTCEECHHHHTHHHHH---GGGGGGSCHHHHHHH
T ss_pred             CCeeeCCCC-CHHHHhCCeEEecCChhhhhhhCHHHHHHHHHHHHHhCCCCCHHHHHHHHHH---HHhhhcCChHHHHHH
Confidence            999999998 9999999999999988889999999999999999999999999999999874   567788999999999


Q ss_pred             HHHhhcCCCHHHHHHHHHHcCchhHHhhCCCCCchhhhhhccccccchhhhHH-HHHHHhhccCC-CccchhHHHHhccc
Q 009892          295 IDLMVSGNQPVKAMTHICGLTLFWIVFKLPLQVEPEVLEGCEMFCTAYLDAAW-DLTQLIGSSTF-NDDQRRLSQYAALF  372 (523)
Q Consensus       295 l~kiL~~~~~~~~L~lL~~~glL~~if~~Pe~~~~~~~~~~~q~~~~h~~tvd-h~l~~l~~~~~-~~e~~~ll~LAaLl  372 (523)
                      |.|||.++++..+|++|+++|+|..+|  |++. ..  .+..|  .+|.|+++ |++.++..... ..+.+..++|||||
T Consensus       223 ~~kiL~~~~~~~~l~~l~~~GlL~~~l--Pe~~-~i--~~~~q--~~h~~~v~~h~L~~~d~~i~~~~~~~~~L~lAALL  295 (415)
T 3aql_A          223 SLKLLQAGYGYETYKLLCEYHLFQPLF--PTIT-RY--FTENG--DSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMF  295 (415)
T ss_dssp             HHHHHTSSCHHHHHHHHHHTTCSTTTC--HHHH-TT--CCSSS--CCHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHT
T ss_pred             HHHHHcCCCHHHHHHHHHHcCChHHhc--hhHH-HH--hccCC--cchHHHHHHHHHHHHHHHHhcCCCCCHHHHHhHhc
Confidence            999999999999999999999999999  8853 21  13333  38889998 88877643100 11345678899999


Q ss_pred             c-ccccccc---cC-CC----CCCchhHHHHHHHHhcC---CCCCHHHHHHHHHHHHHH
Q 009892          373 L-PFRNTTY---KD-NK----GKKIPVVNYTFRDSLKR---KASDAETVMNIHRVLEKF  419 (523)
Q Consensus       373 h-pi~k~~~---~~-~~----~h~~~~~a~iare~Lk~---~~~d~~~v~~lv~~~~~~  419 (523)
                      | |++|+..   .. |.    +| +.+|+.++++.+++   ++.+.+.+.+++..+..+
T Consensus       296 H~di~K~~~~~~~~~G~~~~~~h-~~~ga~~a~~~~~rl~l~~r~~~~v~~lv~lq~rL  353 (415)
T 3aql_A          296 WYPLLETAQKIAQESGLTYHDAF-ALAMNDVLDEACRSLAIPKRLTTLTRDIWQLQLRM  353 (415)
T ss_dssp             HHHHHHHHHHHHHTTCCCHHHHH-HHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHT
T ss_pred             CcchhhhhhhhhhccCCCchHHH-HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence            9 8998732   11 11    34 57899999998887   556777788888776443
>3h38_A TRNA nucleotidyl transferase-related protein; transferase/RNA, nucleotide-binding, RNA-binding; 2.37A {Thermotoga maritima} PDB: 3h37_A 3h39_A* 3h3a_A* Back     alignment and structure
>1vfg_A A-adding enzyme, poly A polymerase; transferase, RNA, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: APC; 2.80A {Aquifex aeolicus} SCOP: a.173.1.1 d.218.1.4 Back     alignment and structure
>1ou5_A TRNA CCA-adding enzyme, tRNA-nucleotidyltransferase; polymerase, translation; 3.40A {Homo sapiens} SCOP: a.173.1.1 d.218.1.4 Back     alignment and structure
>1miw_A TRNA CCA-adding enzyme; tRNA nucleotidyltransferase, translation, transferase; HET: ATP; 3.00A {Geobacillus stearothermophilus} SCOP: a.173.1.1 d.218.1.4 PDB: 1miv_A* 1miy_A* Back     alignment and structure
>2la3_A Uncharacterized protein; ATP binding, CTP binding, structural genomics, PSI-biology, structure initiative; NMR {Streptococcus pneumoniae} Back     alignment and structure
>4e8j_A Lincosamide resistance protein; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); HET: MSE LN0; 1.82A {Staphylococcus haemolyticus} PDB: 4e8i_A* 4fo1_A* Back     alignment and structure
>3djb_A Hydrolase, HD family; all alpha-helical protein., structural genomics, PSI-2, protein structure initiative; 2.90A {Bacillus thuringiensis serovarkonkukian} SCOP: a.211.1.1 Back     alignment and structure
>3dto_A BH2835 protein; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Bacillus halodurans} SCOP: a.211.1.1 Back     alignment and structure
>2fcl_A Hypothetical protein TM1012; putative nucleotidyltransferase, structural genomics, joint for structural genomics, JCSG; HET: MLY; 1.20A {Thermotoga maritima} SCOP: d.218.1.11 PDB: 2ewr_A Back     alignment and structure
>3b57_A LIN1889 protein; Q92AN1, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 3.00A {Listeria innocua CLIP11262} SCOP: a.211.1.1 Back     alignment and structure
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae} Back     alignment and structure
>2qgs_A Protein Se1688; alpha-helical protein, structural genomics, PSI-2, protein S initiative, northeast structural genomics consortium; 2.00A {Staphylococcus epidermidis} SCOP: a.211.1.1 Back     alignment and structure
>2pq7_A Predicted HD superfamily hydrolase; 104161995, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.45A {Uncultured thermotogales bacterium} SCOP: a.211.1.1 Back     alignment and structure
>3gw7_A Uncharacterized protein YEDJ; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Escherichia coli k-12} Back     alignment and structure
>2pjq_A Uncharacterized protein LP_2664; LPR71, NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactobacillus plantarum WCFS1} SCOP: a.211.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 523
d1vfga2136 d.218.1.4 (A:1-136) Poly A polymerase PcnB {Aquife 8e-16
d1ou5a2152 d.218.1.4 (A:-1-150) tRNA CCA-adding enzyme, head 1e-14
d1miwa1265 a.173.1.1 (A:140-404) tRNA CCA-adding enzyme, C-te 1e-13
d1miwa2139 d.218.1.4 (A:1-139) tRNA CCA-adding enzyme, head d 1e-11
d1vfga1215 a.173.1.1 (A:137-351) Poly A polymerase PcnB {Aqui 7e-11
d1ou5a1204 a.173.1.1 (A:151-354) tRNA CCA-adding enzyme, C-te 7e-09
>d1vfga2 d.218.1.4 (A:1-136) Poly A polymerase PcnB {Aquifex aeolicus [TaxId: 63363]} Length = 136 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Nucleotidyltransferase
superfamily: Nucleotidyltransferase
family: Poly A polymerase head domain-like
domain: Poly A polymerase PcnB
species: Aquifex aeolicus [TaxId: 63363]

 Score = 72.2 bits (176), Expect = 8e-16
 Identities = 36/139 (25%), Positives = 56/139 (40%), Gaps = 19/139 (13%)

Query: 96  LRVAGGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETAPSGFGVIPSNPDQ 155
             + GG VRD LLGK+ +D+D  ++             +                 N   
Sbjct: 13  AYIVGGVVRDILLGKEVWDVDFVVEGNAIELAKELARRH---------------GVNVHP 57

Query: 156 SKHLETATMKLYDLWIDFVNLRCEDYSENSRIPTMRFGTAEEDAYRRDLTINSLFYNINT 215
                TA +K+  L ++F   R E Y      P +   + +ED  RRD TIN++  ++N 
Sbjct: 58  FPEFGTAHLKIGKLKLEFATARRETYPRPGAYPKVEPASLKEDLIRRDFTINAMAISVNL 117

Query: 216 SS---VEDLTGRGIADLKH 231
                + D  G G+ DLK 
Sbjct: 118 EDYGTLIDYFG-GLRDLKD 135
>d1ou5a2 d.218.1.4 (A:-1-150) tRNA CCA-adding enzyme, head domain {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Length = 152 Back     information, alignment and structure
>d1miwa1 a.173.1.1 (A:140-404) tRNA CCA-adding enzyme, C-terminal domains {Bacillus stearothermophilus [TaxId: 1422]} Length = 265 Back     information, alignment and structure
>d1miwa2 d.218.1.4 (A:1-139) tRNA CCA-adding enzyme, head domain {Bacillus stearothermophilus [TaxId: 1422]} Length = 139 Back     information, alignment and structure
>d1vfga1 a.173.1.1 (A:137-351) Poly A polymerase PcnB {Aquifex aeolicus [TaxId: 63363]} Length = 215 Back     information, alignment and structure
>d1ou5a1 a.173.1.1 (A:151-354) tRNA CCA-adding enzyme, C-terminal domains {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Length = 204 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query523
d1vfga2136 Poly A polymerase PcnB {Aquifex aeolicus [TaxId: 6 100.0
d1miwa2139 tRNA CCA-adding enzyme, head domain {Bacillus stea 99.97
d1ou5a2152 tRNA CCA-adding enzyme, head domain {Human (Homo s 99.97
d1miwa1265 tRNA CCA-adding enzyme, C-terminal domains {Bacill 99.83
d1vfga1215 Poly A polymerase PcnB {Aquifex aeolicus [TaxId: 6 99.82
d1ou5a1204 tRNA CCA-adding enzyme, C-terminal domains {Human 99.81
d2fcla1157 Hypothetical protein TM1012 {Thermotoga maritima [ 91.69
d1r89a2142 tRNA nucleotidyltransferase, N-terminal domain {Ar 89.56
d3djba1213 Uncharacterized protein BT9727_1981 {Bacillus thur 89.07
d3b57a1201 Uncharacterized protein Lin1889 {Listeria innocua 86.78
d2pq7a1217 Predicted hydrolase mes0020 {Uncultured thermotoga 86.03
d3dtoa1212 Uncharacterized protein BH2835 {Bacillus haloduran 85.93
d2qgsa1216 Uncharacterized protein SE1688 {Staphylococcus epi 85.53
d2bcqa3190 DNA polymerase lambda {Human (Homo sapiens) [TaxId 80.73
>d1vfga2 d.218.1.4 (A:1-136) Poly A polymerase PcnB {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Nucleotidyltransferase
superfamily: Nucleotidyltransferase
family: Poly A polymerase head domain-like
domain: Poly A polymerase PcnB
species: Aquifex aeolicus [TaxId: 63363]

Probab=100.00  E-value=6.1e-34  Score=256.00  Aligned_cols=132  Identities=30%  Similarity=0.460  Sum_probs=103.2

Q ss_pred             HHHHHHhcCCCCeEEEEchHHHHHHcCCCCCCeEEEEcCCChHHHHHHHHHHHHhcCCccCCceEEecCCCCCCcceeeE
Q 009892           83 LLNTLRHFNLETVLRVAGGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETAPSGFGVIPSNPDQSKHLETA  162 (523)
Q Consensus        83 l~~~~~~~~~~~~~yiVGG~VRD~LLg~~~~DiDi~~~~~~~~~f~~~l~~~l~~~g~~~~~~~~vi~~n~~~~k~~~t~  162 (523)
                      |.+.+++.  |.++|+|||||||+|||++|+|+||+|++. +.++++.+.+..   +.    .+..       .++++|+
T Consensus         2 I~~~~~~~--G~~~ylVGG~VRD~llg~~~~DiDi~~~~~-~~e~~~~~~~~~---~~----~~~~-------~~~~~~~   64 (136)
T d1vfga2           2 VGQIAKEM--GLRAYIVGGVVRDILLGKEVWDVDFVVEGN-AIELAKELARRH---GV----NVHP-------FPEFGTA   64 (136)
T ss_dssp             HHHHHHHT--TCCEEEETHHHHHHHTTCCCSEEEEEESSC-HHHHHHHHHHHH---TC----CCEE-------ETTTTEE
T ss_pred             hhHHHHHc--CCeEEEEchHHHHHHcCCCCCCccEEEeee-ecchhhhhhhcc---cc----cccc-------ccccccc
Confidence            45666766  578999999999999999999999999985 677776665532   21    1111       2457899


Q ss_pred             EEEEcCeEEEeeecccccccCCCCCcccccCCHHHHHhcCCCCccceeeecCC---CceecCccccHHHhhcC
Q 009892          163 TMKLYDLWIDFVNLRCEDYSENSRIPTMRFGTAEEDAYRRDLTINSLFYNINT---SSVEDLTGRGIADLKHG  232 (523)
Q Consensus       163 ~~~~~g~~iD~~~~R~e~y~~~~r~p~v~~gt~~eDl~RRDFTINAla~~l~~---~~i~D~~g~G~~DL~~g  232 (523)
                      ++...+..+|++++|+|.|..+++.|.+..+++++||.|||||||||||++++   |+++||+| |++||+++
T Consensus        65 ~~~~~~~~~ei~~~R~e~~~~~~~~~~~~~~~i~eDl~RRDFTiNAma~~~~~~~~g~liDp~g-G~~DL~~k  136 (136)
T d1vfga2          65 HLKIGKLKLEFATARRETYPRPGAYPKVEPASLKEDLIRRDFTINAMAISVNLEDYGTLIDYFG-GLRDLKDK  136 (136)
T ss_dssp             EEEETTEEEEEEECCSCC---------CCCCCHHHHHHTSSBGGGSCEEECCGGGTTCEECSSC-HHHHHHTT
T ss_pred             eeeeccchheehhceeccccccccCceeeeehhhhhhhhcccchhheeeccCcCCCCEEEeCCC-CHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999964   58999998 99999985
>d1miwa2 d.218.1.4 (A:1-139) tRNA CCA-adding enzyme, head domain {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1miwa1 a.173.1.1 (A:140-404) tRNA CCA-adding enzyme, C-terminal domains {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1vfga1 a.173.1.1 (A:137-351) Poly A polymerase PcnB {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1ou5a1 a.173.1.1 (A:151-354) tRNA CCA-adding enzyme, C-terminal domains {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Back     information, alignment and structure
>d2fcla1 d.218.1.11 (A:1-157) Hypothetical protein TM1012 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1r89a2 d.218.1.7 (A:1-142) tRNA nucleotidyltransferase, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d3djba1 a.211.1.1 (A:2-214) Uncharacterized protein BT9727_1981 {Bacillus thuringiensis [TaxId: 1428]} Back     information, alignment and structure
>d3b57a1 a.211.1.1 (A:1-201) Uncharacterized protein Lin1889 {Listeria innocua [TaxId: 1642]} Back     information, alignment and structure
>d2pq7a1 a.211.1.1 (A:1-217) Predicted hydrolase mes0020 {Uncultured thermotogales bacterium [TaxId: 221214]} Back     information, alignment and structure
>d3dtoa1 a.211.1.1 (A:2-213) Uncharacterized protein BH2835 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d2qgsa1 a.211.1.1 (A:1-216) Uncharacterized protein SE1688 {Staphylococcus epidermidis [TaxId: 1282]} Back     information, alignment and structure
>d2bcqa3 d.218.1.2 (A:386-575) DNA polymerase lambda {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure