Citrus Sinensis ID: 009928

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520--
MSKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIVRRCCDSIAWKASRENSTTEDIANRQGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYAKKWLPGKEEVSVGQKEQRTIIENLVNLLPHQDEGVSCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANANDLLIPNYKNEDHAKLNSPEHNTMHNIDVVQRIMDYFLMHEQQQQQKQQNMGKTNVSKILDNYLAEVARDPNLSITKFQVLAESLPENARTCHDGLYRAIDTYLKSHPSLSEHDRRRLCKLMNCEKLSLDACTHAAQNDRLPLRTVVQVLFSEQVKMRTAMQETEPALQCDNSEQGDTQPSTSIEIKNLREELENVKTRMAELQKDYSELQREYEKLSNKHKIVSSWSLGWRKIKNSFHSKADADETGNRRQTFNSTSRRTSFRRRPSLP
ccccHHHHHHHcccccccccccEEEccccccHHHHHHHHHHHcccccccccccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccHHHccHHHHHHHHHHHHHcccccHHHHHHHccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccc
ccccHHHHHHEEcccccccccEEEEccccccHHHHHHHHHHHcccEEEEcHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccHcccccccHHHHHHHHHHHcccccHHHHHHHHHHHcHHHccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccc
mskcgyiarlelqpsisnlgydlklenfpggseTFEIILKFCyglpiafnpnniaplrcasefldmseeyedgnliskTEAFLTLVILSSWKETITVLKScknlspwaENLQIVRRCCDSIAWkasrensttedianrqgwwfddvatlGIDHFMRIITTIkvkgtkpeiIGKCIMHYAKkwlpgkeevsvgQKEQRTIIENLVNllphqdegvscKFFLQMLKMAMVYNASPALISELEKRVGMMLedanandllipnyknedhaklnspehntmhnIDVVQRIMDYFLMHEQQQQQKQQNMGKTNVSKILDNYLAevardpnlsiTKFQVLAEslpenartcHDGLYRAIDTylkshpslsehDRRRLCKlmnceklslDACTHaaqndrlplRTVVQVLFSEQVKMRTAmqetepalqcdnseqgdtqpstSIEIKNLREELENVKTRMAELQKDYSELQREYEKLSNKHKIVSSWSLGWRKIKnsfhskadadetgnrrqtfnstsrrtsfrrrpslp
MSKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIVRRCCDSIAWkasrensttedianrqgwwFDDVATLGIDHFMRIITTikvkgtkpeiIGKCIMHYAKKWLPGKEEVSVGQKEQRTIIENLVNLLPHQDEGVSCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANANDLLIPNYKNEDHAklnspehntmHNIDVVQRIMDYFLMHEQQQQQKQQNMGKTNVSKILDNYLAEVARDPNLSITKFQVLAESLPENARTCHDGLYRAIDTylkshpslsehdrRRLCKLMNCEKLSLDACTHaaqndrlplRTVVQVLFSEQVKMRTAMQetepalqcdnseqgdtqpstSIEIKNLREELENVKTRMAELQKDYSELQREYEKlsnkhkivsswslgwrkIKNSFhskadadetgnrrqtfnstsrrtsfrrrpslp
MSKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIVRRCCDSIAWKASRENSTTEDIANRQGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYAKKWLPGKEEVSVGQKEQRTIIENLVNLLPHQDEGVSCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANANDLLIPNYKNEDHAKLNSPEHNTMHNIDVVQRIMDYFLMHEqqqqqkqqNMGKTNVSKILDNYLAEVARDPNLSITKFQVLAESLPENARTCHDGLYRAIDTYLKSHPSLSEHDRRRLCKLMNCEKLSLDACTHAAQNDRLPLRTVVQVLFSEQVKMRTAMQETEPALQCDNSEQGDTQPSTSIEIKNLREELENVKTRMAELQKDYSELQREYEKLSNKHKIVSSWSLGWRKIKNSFHSKADADETGnrrqtfnstsrrtsfrrrPSLP
***CGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIVRRCCDSIAWKASRENSTTEDIANRQGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYAKKWLPGKEEVSVGQKEQRTIIENLVNLLPHQDEGVSCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANANDLLIPNY***************MHNIDVVQRIMDYFLM******************KILDNYLAEVARDPNLSITKFQVLAESLPENARTCHDGLYRAIDTYLKSHPSL**HDRRRLCKLMNCEKLSLDACTHAAQNDRLPLRTVVQVLFSEQ******************************************************************HKIVSSWSLGWRKIK***********************************
*SKCGYI****************KLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIVRRCCDSIAWKASRENST*EDIANRQGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYAKKWLPGKEE*****KEQRTIIENLVNLLPHQDEGVSCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANANDLLIPNY*************NTMHNIDVVQRIMDY*********************KILDNYLAEVARDPNLSITKFQVLAESLPENARTCHDGLYRAIDTYLKSHPSLSEHDRRRLCKLMNCEKLSLDACTHAAQNDRLPLRTVVQVLF***********************************************************************************************************************
MSKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIVRRCCDSIAWKASRENSTTEDIANRQGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYAKKWLPGK********EQRTIIENLVNLLPHQDEGVSCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANANDLLIPNYKNEDHAKLNSPEHNTMHNIDVVQRIMDYFLMH************KTNVSKILDNYLAEVARDPNLSITKFQVLAESLPENARTCHDGLYRAIDTYLKSHPSLSEHDRRRLCKLMNCEKLSLDACTHAAQNDRLPLRTVVQVLFSEQVKMR**********************STSIEIKNLREELENVKTRMAELQKDYSELQREYEKLSNKHKIVSSWSLGWRKIKNSFHSK*****************************
**KCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIVRRCCDSIAWKASRENST*E*IANRQGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYAKKWLPGKEEVSVGQKEQRTIIENLVNLLPHQDEGVSCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANANDLLIPNYKNE******SPEHNTMHNIDVVQRIMDYFLMHEQQQQQKQQNMGKTNVSKILDNYLAEVARDPNLSITKFQVLAESLPENARTCHDGLYRAIDTYLKSHPSLSEHDRRRLCKLMNCEKLSLDACTHAAQNDRLPLRTVVQVLFSEQVKMRTAMQ*******************TSIEIKNLREELENVKTRMAELQKDYSELQREYEKLSN*******W*******************************************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MSKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIVRRCCDSIAWKASRENSTTEDIANRQGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYAKKWLPGKEEVSVGQKEQRTIIENLVNLLPHQDEGVSCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANANDLLIPNYKNEDHAKLNSPEHNTMHNIDVVQRIMDYFLMHEQQQQQKQQNMGKTNVSKILDNYLAEVARDPNLSITKFQVLAESLPENARTCHDGLYRAIDTYLKSHPSLSEHDRRRLCKLMNCEKLSLDACTHAAQNDRLPLRTVVQVLFSEQVKMRTAMQETEPALQCDNSEQGDTQPSTSIExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxHKIVSSWSLGWRKIKNSFHSKADADETGNRRQTFNSTSRRTSFRRRPSLP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query522 2.2.26 [Sep-21-2011]
Q9LFU0607 Putative BTB/POZ domain-c yes no 0.961 0.827 0.585 1e-179
Q5KS50762 Coleoptile phototropism p yes no 0.869 0.595 0.377 1e-121
Q9S9Q9665 BTB/POZ domain-containing no no 0.860 0.675 0.359 6e-91
Q9FNB3591 Putative BTB/POZ domain-c no no 0.871 0.769 0.377 1e-90
Q94A73668 BTB/POZ domain-containing no no 0.789 0.616 0.387 8e-87
Q66GP0604 BTB/POZ domain-containing no no 0.768 0.663 0.393 8e-86
Q9C9Z7617 BTB/POZ domain-containing no no 0.967 0.818 0.335 3e-84
Q9C9Z0582 Putative BTB/POZ domain-c no no 0.906 0.812 0.337 4e-84
Q9SA69634 BTB/POZ domain-containing no no 0.915 0.753 0.353 3e-83
Q9LYW0592 BTB/POZ domain-containing no no 0.896 0.790 0.344 3e-83
>sp|Q9LFU0|DOT3_ARATH Putative BTB/POZ domain-containing protein DOT3 OS=Arabidopsis thaliana GN=DOT3 PE=3 SV=1 Back     alignment and function desciption
 Score =  627 bits (1617), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 325/555 (58%), Positives = 406/555 (73%), Gaps = 53/555 (9%)

Query: 1   MSKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCA 60
           +SKCGYI+ +EL+PS S  GY LKLENFPGG++TFE ILKFCY LP+  NP N+APLRCA
Sbjct: 71  ISKCGYISSIELKPSTSENGYHLKLENFPGGADTFETILKFCYNLPLDLNPLNVAPLRCA 130

Query: 61  SEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIVRRCCDS 120
           SE+L M+EE+E GNLISKTEAF+T V+L+SW++T+TVL+SC NLSPWAENLQIVRRCCD 
Sbjct: 131 SEYLYMTEEFEAGNLISKTEAFITFVVLASWRDTLTVLRSCTNLSPWAENLQIVRRCCDL 190

Query: 121 IAWKASRENSTTEDIANR-QGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYA 179
           +AWKA  +N+  ED+ +R +   ++D+ATL IDHFMR+ITT+K +  KP+I GK IM YA
Sbjct: 191 LAWKACNDNNIPEDVVDRNERCLYNDIATLDIDHFMRVITTMKARRAKPQITGKIIMKYA 250

Query: 180 KKWLP--------------GKEEV-------------SVGQKEQRTIIENLVNLLPHQDE 212
             +LP              GK E+             S+G +E +  IE+LV++LP Q  
Sbjct: 251 DNFLPVINDDLEGIKGYGLGKNELQFSVNRGRMEESNSLGCQEHKETIESLVSVLPPQSG 310

Query: 213 GVSCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANANDLLIPNYKNEDHAKLNSPE 272
            VSC F L+MLK ++VY+ASPALIS+LEKRVGM LEDAN  DLLIPN+KNE+  +     
Sbjct: 311 AVSCHFLLRMLKTSIVYSASPALISDLEKRVGMALEDANVCDLLIPNFKNEEQQER---- 366

Query: 273 HNTMHNIDVVQRIMDYFLMHEQQQQQKQQNMGKTNVSKILDNYLAEVARDPNLSITKFQV 332
                      RI ++FLMHEQQQ      +GK ++SK+LDNYLAE+A+DP L ITKFQV
Sbjct: 367 ----------VRIFEFFLMHEQQQV-----LGKPSISKLLDNYLAEIAKDPYLPITKFQV 411

Query: 333 LAESLPENARTCHDGLYRAIDTYLKSHPSLSEHDRRRLCKLMNCEKLSLDACTHAAQNDR 392
           LAE LPENA  CHDGLYRAID +LK+HPSLS+HDRRRLCK MNCEKLSLDAC HAAQNDR
Sbjct: 412 LAEMLPENAWKCHDGLYRAIDMFLKTHPSLSDHDRRRLCKTMNCEKLSLDACLHAAQNDR 471

Query: 393 LPLRTVV----QVLFSEQVKMRTAMQETEPALQCDNS-EQGDTQPSTSIE-IKNLREELE 446
           LPLRT+V    QVLFSEQVKMR  MQ+  P  + +NS  + D + S   E IK L+EELE
Sbjct: 472 LPLRTIVQINTQVLFSEQVKMRMMMQDKLPEKEEENSGGREDKRMSRDNEIIKTLKEELE 531

Query: 447 NVKTRMAELQKDYSELQREYEKLSNKHKIVSSWSLGWRKIKNSFHSKADADETGNRRQTF 506
           NVK +M+ELQ DY+ELQ+EYE+LS+K K   +W L W+K+K SF +K + +ET  R +  
Sbjct: 532 NVKKKMSELQSDYNELQQEYERLSSKQKSSHNWGLRWQKVKKSFQTKREDEETRERTRRR 591

Query: 507 NSTSRRTSFRRRPSL 521
           +ST +RTSFRRR S+
Sbjct: 592 SSTGQRTSFRRRMSM 606
May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.
Arabidopsis thaliana (taxid: 3702)
>sp|Q5KS50|NPH3_ORYSJ Coleoptile phototropism protein 1 OS=Oryza sativa subsp. japonica GN=CPT1 PE=2 SV=1 Back     alignment and function description
>sp|Q9S9Q9|Y1044_ARATH BTB/POZ domain-containing protein At1g30440 OS=Arabidopsis thaliana GN=At1g30440 PE=1 SV=2 Back     alignment and function description
>sp|Q9FNB3|Y5360_ARATH Putative BTB/POZ domain-containing protein At5g13600 OS=Arabidopsis thaliana GN=At5g13600 PE=3 SV=1 Back     alignment and function description
>sp|Q94A73|Y5656_ARATH BTB/POZ domain-containing protein At5g66560 OS=Arabidopsis thaliana GN=At5g66560 PE=2 SV=2 Back     alignment and function description
>sp|Q66GP0|Y5738_ARATH BTB/POZ domain-containing protein At5g67385 OS=Arabidopsis thaliana GN=At5g67385 PE=2 SV=2 Back     alignment and function description
>sp|Q9C9Z7|Y3857_ARATH BTB/POZ domain-containing protein At3g08570 OS=Arabidopsis thaliana GN=At3g08570 PE=2 SV=2 Back     alignment and function description
>sp|Q9C9Z0|Y3866_ARATH Putative BTB/POZ domain-containing protein At3g08660 OS=Arabidopsis thaliana GN=At3g08660 PE=3 SV=1 Back     alignment and function description
>sp|Q9SA69|Y1301_ARATH BTB/POZ domain-containing protein At1g03010 OS=Arabidopsis thaliana GN=At1g03010 PE=2 SV=1 Back     alignment and function description
>sp|Q9LYW0|Y5325_ARATH BTB/POZ domain-containing protein At5g03250 OS=Arabidopsis thaliana GN=At5g03250 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query522
255580882 643 Root phototropism protein, putative [Ric 0.998 0.810 0.682 0.0
429326652 637 transposase [Populus tomentosa] 0.990 0.811 0.671 0.0
224093756544 predicted protein [Populus trichocarpa] 0.923 0.886 0.690 0.0
224081144540 predicted protein [Populus trichocarpa] 0.931 0.9 0.688 0.0
356528467 626 PREDICTED: putative BTB/POZ domain-conta 0.963 0.803 0.669 0.0
356511091 629 PREDICTED: putative BTB/POZ domain-conta 0.963 0.799 0.661 0.0
449439029616 PREDICTED: putative BTB/POZ domain-conta 0.982 0.832 0.619 0.0
449483335616 PREDICTED: putative BTB/POZ domain-conta 0.982 0.832 0.619 0.0
296084654489 unnamed protein product [Vitis vinifera] 0.789 0.842 0.734 0.0
296090702459 unnamed protein product [Vitis vinifera] 0.789 0.897 0.730 0.0
>gi|255580882|ref|XP_002531260.1| Root phototropism protein, putative [Ricinus communis] gi|223529145|gb|EEF31124.1| Root phototropism protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  777 bits (2006), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/551 (68%), Positives = 435/551 (78%), Gaps = 30/551 (5%)

Query: 1   MSKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCA 60
           +SKCGYI RLELQPSISN GY+LKLENFPGGSE FEIILKFCYGLP+  NPNNIA LRCA
Sbjct: 92  VSKCGYIGRLELQPSISNFGYELKLENFPGGSEAFEIILKFCYGLPLDLNPNNIAALRCA 151

Query: 61  SEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIVRRCCDS 120
           SEFL+MSEE EDGNLISKTEAFLT V+LSSWK+TITVLKSC+ LSPWAENLQIVRRCCDS
Sbjct: 152 SEFLEMSEELEDGNLISKTEAFLTFVVLSSWKDTITVLKSCETLSPWAENLQIVRRCCDS 211

Query: 121 IAWKASRENSTTEDIANRQGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYAK 180
           IAWKASR+NST  +I N +GWWFDDVATL  DHFMRI+T ++ KG KPEI GKCIMHYA 
Sbjct: 212 IAWKASRDNSTVHNIINEEGWWFDDVATLRTDHFMRIVTAVRAKGAKPEITGKCIMHYAS 271

Query: 181 KWLP--------------GKEEVSVG-------------QKEQRTIIENLVNLLPHQDEG 213
           +WLP              GK E+  G              KEQ+ IIE++V LLP Q E 
Sbjct: 272 RWLPGMDVELEGLRGYRYGKNELQFGILCGRNKDEGVGHSKEQKNIIESIVRLLPPQPEA 331

Query: 214 VSCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANANDLLIPNYKNEDHAK-LNSPE 272
           V CKF L+MLKMA+VY+ASPALISELE RVG+ LE+A+ NDLLIPNYK ED  K +  PE
Sbjct: 332 VPCKFLLKMLKMAIVYSASPALISELEMRVGLTLENASVNDLLIPNYKTEDQVKTMKHPE 391

Query: 273 HNTMHNIDVVQRIMDYFLMHEQQQQQKQQNMGKTNVSKILDNYLAEVARDPNLSITKFQV 332
           H  M+NI+VVQRI++YFLMHEQ+QQQ Q   GK+NVSK++DNYLAE+ARDPNLSITKFQV
Sbjct: 392 HCVMYNIEVVQRIVEYFLMHEQEQQQLQPMSGKSNVSKLMDNYLAEIARDPNLSITKFQV 451

Query: 333 LAESLPENARTCHDGLYRAIDTYLKSHPSLSEHDRRRLCKLMNCEKLSLDACTHAAQNDR 392
           LAE LPENARTC DGLYR+IDTYLK+HPSLSEHDR+RLCK+MNCEKLSLDAC HAAQNDR
Sbjct: 452 LAEVLPENARTCDDGLYRSIDTYLKTHPSLSEHDRKRLCKVMNCEKLSLDACMHAAQNDR 511

Query: 393 LPLRTVVQVLFSEQVKMRTAMQETEPALQCDNSEQGDTQPSTSIEIKNLREELENVKTRM 452
           LP+RTV+QVLFSEQVKMR AM+  EPA   +NSEQ  +Q ST  EI  L+ ELENVK +M
Sbjct: 512 LPMRTVIQVLFSEQVKMREAMRGKEPAASGNNSEQEVSQTSTKAEIMTLKTELENVKAKM 571

Query: 453 AELQKDYSELQREYEKLSNKHKIVSSWSLGWRKIKNS--FHSKADADETGNRRQTFNSTS 510
           AELQ+DYSELQ EY K+++K + +  WS  W+KI+ S  F  K +A+ET   +Q  N   
Sbjct: 572 AELQRDYSELQHEYVKINSKQRHLPGWSFNWKKIRKSSLFSRKTEAEETSEGQQRSNPLI 631

Query: 511 RRTSFRRRPSL 521
            + +FRRR S+
Sbjct: 632 SKINFRRRQSI 642

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|429326652|gb|AFZ78666.1| transposase [Populus tomentosa] Back     alignment and taxonomy information
>gi|224093756|ref|XP_002309978.1| predicted protein [Populus trichocarpa] gi|222852881|gb|EEE90428.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224081144|ref|XP_002306309.1| predicted protein [Populus trichocarpa] gi|222855758|gb|EEE93305.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356528467|ref|XP_003532824.1| PREDICTED: putative BTB/POZ domain-containing protein DOT3-like [Glycine max] Back     alignment and taxonomy information
>gi|356511091|ref|XP_003524263.1| PREDICTED: putative BTB/POZ domain-containing protein DOT3-like [Glycine max] Back     alignment and taxonomy information
>gi|449439029|ref|XP_004137290.1| PREDICTED: putative BTB/POZ domain-containing protein DOT3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449483335|ref|XP_004156559.1| PREDICTED: putative BTB/POZ domain-containing protein DOT3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|296084654|emb|CBI25777.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|296090702|emb|CBI41104.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query522
TAIR|locus:2145387607 DOT3 "DEFECTIVELY ORGANIZED TR 0.944 0.812 0.530 3e-133
TAIR|locus:2173418746 NPH3 "NON-PHOTOTROPIC HYPOCOTY 0.363 0.254 0.489 7.3e-118
TAIR|locus:2158182579 NPY3 "NAKED PINS IN YUC MUTANT 0.561 0.506 0.379 1.7e-82
TAIR|locus:2173204591 AT5G13600 [Arabidopsis thalian 0.637 0.563 0.370 1.2e-81
TAIR|locus:2154920668 AT5G66560 [Arabidopsis thalian 0.588 0.459 0.383 8.3e-81
TAIR|locus:2028160665 AT1G30440 [Arabidopsis thalian 0.455 0.357 0.436 2.4e-77
TAIR|locus:2046961634 NPY2 "NAKED PINS IN YUC MUTANT 0.657 0.541 0.357 9.7e-74
TAIR|locus:2077868582 AT3G08660 [Arabidopsis thalian 0.863 0.774 0.348 1.1e-73
TAIR|locus:2156524614 AT5G48800 [Arabidopsis thalian 0.904 0.768 0.353 5.9e-73
TAIR|locus:2200286631 AT1G67900 [Arabidopsis thalian 0.239 0.198 0.496 2.5e-72
TAIR|locus:2145387 DOT3 "DEFECTIVELY ORGANIZED TRIBUTARIES 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1306 (464.8 bits), Expect = 3.0e-133, P = 3.0e-133
 Identities = 276/520 (53%), Positives = 359/520 (69%)

Query:     1 MSKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCA 60
             +SKCGYI+ +EL+PS S  GY LKLENFPGG++TFE ILKFCY LP+  NP N+APLRCA
Sbjct:    71 ISKCGYISSIELKPSTSENGYHLKLENFPGGADTFETILKFCYNLPLDLNPLNVAPLRCA 130

Query:    61 SEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIVRRCCDS 120
             SE+L M+EE+E GNLISKTEAF+T V+L+SW++T+TVL+SC NLSPWAENLQIVRRCCD 
Sbjct:   131 SEYLYMTEEFEAGNLISKTEAFITFVVLASWRDTLTVLRSCTNLSPWAENLQIVRRCCDL 190

Query:   121 IAWKASRENSTTEDIANR-QGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYA 179
             +AWKA  +N+  ED+ +R +   ++D+ATL IDHFMR+ITT+K +  KP+I GK IM YA
Sbjct:   191 LAWKACNDNNIPEDVVDRNERCLYNDIATLDIDHFMRVITTMKARRAKPQITGKIIMKYA 250

Query:   180 KKWLP-------GKEEVSVGQKE-QRTIIENLV---NLLPHQDEGVSCKFFLQMLKMAMV 228
               +LP       G +   +G+ E Q ++    +   N L  Q+   + +  + +L     
Sbjct:   251 DNFLPVINDDLEGIKGYGLGKNELQFSVNRGRMEESNSLGCQEHKETIESLVSVLPPQSG 310

Query:   229 YNASPALISELEKRVGMMLEDANANDL---LIPNYKNEDHAKLNSPEHNTMHNIDVVQRI 285
               +   L+  L+  +      A  +DL   +    ++ +   L  P        + V RI
Sbjct:   311 AVSCHFLLRMLKTSIVYSASPALISDLEKRVGMALEDANVCDLLIPNFKNEEQQERV-RI 369

Query:   286 MDYFLMHEXXXXXXXXNMGKTNVSKILDNYLAEVARDPNLSITKFQVLAESLPENARTCH 345
              ++FLMHE         +GK ++SK+LDNYLAE+A+DP L ITKFQVLAE LPENA  CH
Sbjct:   370 FEFFLMHEQQQV-----LGKPSISKLLDNYLAEIAKDPYLPITKFQVLAEMLPENAWKCH 424

Query:   346 DGLYRAIDTYLKSHPSLSEHDRRRLCKLMNCEKLSLDACTHAAQNDRLPLRTVVQ----V 401
             DGLYRAID +LK+HPSLS+HDRRRLCK MNCEKLSLDAC HAAQNDRLPLRT+VQ    V
Sbjct:   425 DGLYRAIDMFLKTHPSLSDHDRRRLCKTMNCEKLSLDACLHAAQNDRLPLRTIVQINTQV 484

Query:   402 LFSEQVKMRTAMQETEPALQCDNSE-QGDTQPSTSIEI-KNLREELENVKTRMAELQKDY 459
             LFSEQVKMR  MQ+  P  + +NS  + D + S   EI K L+EELENVK +M+ELQ DY
Sbjct:   485 LFSEQVKMRMMMQDKLPEKEEENSGGREDKRMSRDNEIIKTLKEELENVKKKMSELQSDY 544

Query:   460 SELQREYEKLSNKHKIVSSWSLGWRKIKNSFHSKADADET 499
             +ELQ+EYE+LS+K K   +W L W+K+K SF +K + +ET
Sbjct:   545 NELQQEYERLSSKQKSSHNWGLRWQKVKKSFQTKREDEET 584
GO:0004871 "signal transducer activity" evidence=IEA;ISS
GO:0005886 "plasma membrane" evidence=ISM
GO:0009416 "response to light stimulus" evidence=IEA;ISS
GO:0010087 "phloem or xylem histogenesis" evidence=IMP
GO:0010305 "leaf vascular tissue pattern formation" evidence=IMP
GO:0010588 "cotyledon vascular tissue pattern formation" evidence=IMP
GO:0048367 "shoot system development" evidence=IMP
GO:0080022 "primary root development" evidence=IMP
TAIR|locus:2173418 NPH3 "NON-PHOTOTROPIC HYPOCOTYL 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158182 NPY3 "NAKED PINS IN YUC MUTANTS 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2173204 AT5G13600 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2154920 AT5G66560 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2028160 AT1G30440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2046961 NPY2 "NAKED PINS IN YUC MUTANTS 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077868 AT3G08660 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2156524 AT5G48800 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200286 AT1G67900 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LFU0DOT3_ARATHNo assigned EC number0.58550.96160.8270yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query522
pfam03000249 pfam03000, NPH3, NPH3 family 1e-116
>gnl|CDD|217312 pfam03000, NPH3, NPH3 family Back     alignment and domain information 
 Score =  343 bits (881), Expect = e-116
 Identities = 115/257 (44%), Positives = 172/257 (66%), Gaps = 23/257 (8%)

Query: 141 WWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYAKKWLPGKEEVSVG----QKEQ 196
           WWF+D++ L ID F R+IT +K +G KPE+IG+ +MHYAKKWLPG           ++EQ
Sbjct: 3   WWFEDLSELSIDLFKRVITAMKSRGVKPEVIGEALMHYAKKWLPGLSRSGSSEEDSEEEQ 62

Query: 197 RTIIENLVNLLPHQDEGVSCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANANDLL 256
           R ++E +V+LLP +   VSC F  ++L+ A++  AS +   ELE+R+G+ L+ A  +DLL
Sbjct: 63  RALLETIVSLLPSEKGSVSCSFLFKLLRAAIILGASESCREELERRIGLQLDQATLDDLL 122

Query: 257 IPN-YKNEDHAKLNSPEHNTMHNIDVVQRIMDYFLMHEQQQQQK--------QQNMGKTN 307
           IP+ Y  E+          T++++D+VQRI++ FL  +   Q            +     
Sbjct: 123 IPSGYSGEE----------TLYDVDLVQRILEVFLSRDAATQSSDDEDSEASPSSSSLLK 172

Query: 308 VSKILDNYLAEVARDPNLSITKFQVLAESLPENARTCHDGLYRAIDTYLKSHPSLSEHDR 367
           V+K++D YLAE+A DPNL ++KF  LAE++P++AR  HDGLYRAID YLK+HP+LSE ++
Sbjct: 173 VAKLVDGYLAEIAPDPNLKLSKFIALAEAVPDSARPSHDGLYRAIDIYLKAHPNLSESEK 232

Query: 368 RRLCKLMNCEKLSLDAC 384
           +RLC+LM+C+KLS +AC
Sbjct: 233 KRLCRLMDCQKLSQEAC 249

Phototropism of Arabidopsis thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase. Mutations in NPH3 disrupt early signaling occurring downstream of the NPH1 photoreceptor. The NPH3 gene encodes a NPH1-interacting protein. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay. Length = 249

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 522
PF03000258 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 pr 100.0
PF00651111 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB ( 97.94
smart0022590 BTB Broad-Complex, Tramtrack and Bric a brac. Doma 97.79
PHA03098534 kelch-like protein; Provisional 97.64
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 97.04
PHA02713557 hypothetical protein; Provisional 96.96
PHA02790480 Kelch-like protein; Provisional 96.01
PF11822317 DUF3342: Domain of unknown function (DUF3342); Int 89.82
>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana Back     alignment and domain information 
Probab=100.00  E-value=3.6e-90  Score=688.45  Aligned_cols=237  Identities=49%  Similarity=0.921  Sum_probs=219.6

Q ss_pred             CCceehhccccChHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhcCCCC-----------CCccchHhHHHHHHHHHhhC
Q 009928          139 QGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYAKKWLPGKE-----------EVSVGQKEQRTIIENLVNLL  207 (522)
Q Consensus       139 ~dWW~eDl~~L~~~~f~rvi~am~~~g~~~~~i~~~l~~Ya~k~l~~~~-----------~~~~~~~~qr~llE~iv~lL  207 (522)
                      .|||||||+.|++|+|+|||.+|+++||+|++||++|++||+||||+..           .......+||.+||+||+||
T Consensus         1 ~dWW~eDl~~L~id~f~rvi~a~~~~~~~~~~I~~~l~~Ya~k~l~~~~~~~~~~~~~~~~~~~~~~~~r~llEtiV~lL   80 (258)
T PF03000_consen    1 KDWWFEDLSELSIDLFKRVISAMKSKGMKPEVIGEALMHYAKKWLPGLSRSSSGSSSSAESSTSSENEQRELLETIVSLL   80 (258)
T ss_pred             CCccHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcccccccccccccccchhHHHHHHHHHHHHHhC
Confidence            4899999999999999999999999999999999999999999999961           12345789999999999999


Q ss_pred             CCCCCcccHHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccccccccCCCCccccccCCCCCCcccchhHHHHHHH
Q 009928          208 PHQDEGVSCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANANDLLIPNYKNEDHAKLNSPEHNTMHNIDVVQRIMD  287 (522)
Q Consensus       208 P~~k~~vsc~fL~~LLR~A~~l~as~~cr~~LE~rIg~qLdqAtldDLLIPs~~~~~~~~~~~~~~~tlyDVd~V~Riv~  287 (522)
                      |.++++|||+|||+|||+|+++++|++||.+||+|||.|||||||||||||+ ++.++        +|+||||+|+|||+
T Consensus        81 P~e~~svsc~FL~~LLr~A~~l~as~~cr~~Le~rIg~qLd~AtldDLLIP~-~~~~~--------~t~yDVd~V~riv~  151 (258)
T PF03000_consen   81 PPEKGSVSCSFLFRLLRAAIMLGASSACRNELERRIGSQLDQATLDDLLIPS-SPSGE--------DTLYDVDLVQRIVE  151 (258)
T ss_pred             CCCCCcccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhccHHHhcccC-CCCcc--------cchhhHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999 33332        19999999999999


Q ss_pred             HHHhhhhhh----------hhhhccchhhhhhhhhhhhhhhhcCCCCCChhHHHHHHHhcCCcccccchhhHHHHHHHHh
Q 009928          288 YFLMHEQQQ----------QQKQQNMGKTNVSKILDNYLAEVARDPNLSITKFQVLAESLPENARTCHDGLYRAIDTYLK  357 (522)
Q Consensus       288 ~Fl~~~~~~----------~~~~~~~~l~kVakLvD~YLaEiA~D~nL~~skF~~LAe~lP~~AR~~~DgLYRAIDiYLK  357 (522)
                      +||.+++..          ...++..++.+||||||+||+|||+|+||+|+||++|||+||++||++|||||||||||||
T Consensus       152 ~Fl~~~~~~~~~~~~~~~~~~~~~~~~~~~VakLvD~YLaEiA~D~~L~~~kF~~Lae~lP~~aR~~hD~LYrAID~YLk  231 (258)
T PF03000_consen  152 HFLSQEEEAGEEEESESESGSSPSSSSLVKVAKLVDGYLAEIAPDPNLKPSKFVALAEALPDSARPSHDGLYRAIDIYLK  231 (258)
T ss_pred             HHHhcccccccccccccccccCCChHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHCCHhhhhccchHHHHHHHHHH
Confidence            999984321          1125678999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCCHHhhhhhhcccccCCCCHHHh
Q 009928          358 SHPSLSEHDRRRLCKLMNCEKLSLDAC  384 (522)
Q Consensus       358 aHp~lse~Er~~lCr~mdc~KLS~EAc  384 (522)
                      +||+||++||++||++|||||||+|||
T Consensus       232 ~Hp~ls~~Er~~lC~~ldc~KLS~EAC  258 (258)
T PF03000_consen  232 AHPGLSEEERKRLCRLLDCQKLSPEAC  258 (258)
T ss_pred             HcccCCHHHHHHHHhhCCcccCCcccC
Confidence            999999999999999999999999999

The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins Back     alignment and domain information
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query522
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-08
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 59.1 bits (142), Expect = 2e-09
 Identities = 79/519 (15%), Positives = 152/519 (29%), Gaps = 144/519 (27%)

Query: 35  FEI-ILKFCYG--LPIAFNPNNIAPLRCASEFLDM------SEEYED----GNLISKTEA 81
           FE    ++ Y   L + F    +    C  +  DM       EE +      + +S T  
Sbjct: 9   FETGEHQYQYKDILSV-FEDAFVDNFDC-KDVQDMPKSILSKEEIDHIIMSKDAVSGTL- 65

Query: 82  FLTLVILSSWKETI-----TVLKSCKNLSPW-AENLQIVRRCCDSIAWKASRENSTTEDI 135
            L   +LS  +E +      VL+   N   +    ++  +R              T   I
Sbjct: 66  RLFWTLLSKQEEMVQKFVEEVLR--INY-KFLMSPIKTEQR---------QPSMMTRMYI 113

Query: 136 ANRQGWWFDDVATLGIDHFMRI--ITTIK--VKGTKPEI---------IGK--------- 173
             R   + +D       +  R+     ++  +   +P            GK         
Sbjct: 114 EQRDRLY-NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL 172

Query: 174 -----CIMHYAKKWLPGKEEVSVGQ-KEQRTIIENLVNLLPHQDEGVSCKFFLQMLKMAM 227
                C M +   WL      ++       T++E L  LL +Q +            +  
Sbjct: 173 SYKVQCKMDFKIFWL------NLKNCNSPETVLEMLQKLL-YQIDPNWTSRSDHSSNI-- 223

Query: 228 VYNASPALISELEKRVGMMLEDAN-ANDLLIPNYKNEDHAKLNSPEHNTMHNIDVVQ--R 284
                   I  ++  +  +L+     N LL+                     +  VQ  +
Sbjct: 224 -----KLRIHSIQAELRRLLKSKPYENCLLV---------------------LLNVQNAK 257

Query: 285 IMDYF------LMHEQQQQQKQQNMGKTNVSKILDNYLAEVARDPNLSI-TKF-QVLAES 336
             + F      L+  + +Q        T     LD++   +  D   S+  K+     + 
Sbjct: 258 AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317

Query: 337 LPENARTCHDGLYRAIDTYLKSHPSLSEHDRRRLC-KLMNCEKLSLDACTHAAQNDRLPL 395
           LP    T +      I   ++   +  ++ +   C KL    + SL+    A        
Sbjct: 318 LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR 377

Query: 396 RTVVQVLFSEQVKMRTAMQETEPALQ---CDNSEQGDTQPSTSIEIKNLREELENVKTRM 452
            +V    F     +          L     D  +          ++  +  +L   K  +
Sbjct: 378 LSV----FPPSAHI------PTILLSLIWFDVIKS---------DVMVVVNKL--HKYSL 416

Query: 453 AELQKD---------YSELQREYEKLSNKHK-IVSSWSL 481
            E Q           Y EL+ + E     H+ IV  +++
Sbjct: 417 VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNI 455
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query522
3i3n_A279 Kelch-like protein 11; structural genomics, BTB, K 98.62
3hve_A256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 98.39
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 98.29
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 98.27
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 98.2
3b84_A119 Zinc finger and BTB domain-containing protein 48; 98.2
3htm_A172 Speckle-type POZ protein; BTB, SPOP, ubiquitin, li 98.18
2vpk_A116 Myoneurin; transcription regulation, transcription 98.14
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 98.09
2ppi_A144 Gigaxonin; BTB domain, protein degradation, struct 98.07
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 98.06
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 98.03
4eoz_A145 Speckle-type POZ protein; E3 ubiquitin ligase, nuc 98.02
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 98.02
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 98.02
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 97.91
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 97.73
3fkc_A116 Transcriptional regulator kaiso; zinc finger and B 97.67
3m5b_A119 Zinc finger and BTB domain-containing protein 32; 97.66
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 97.63
4ajy_C97 Transcription elongation factor B polypeptide 1; E 96.19
2ast_A159 S-phase kinase-associated protein 1A; SCF-substrat 95.95
2p1m_A160 SKP1-like protein 1A; F-BOX, leucine rich repeat, 92.3
1fs1_B141 SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le 92.06
2yy0_A53 C-MYC-binding protein; conserved hypothetical prot 84.47
3v7d_A169 Suppressor of kinetochore protein 1; WD 40 domain, 82.15
3vmx_A48 Voltage-gated hydrogen channel 1; coiled-coil, ION 81.22
2fnj_C96 Transcription elongation factor B polypeptide 1; b 80.44
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A Back     alignment and structure
Probab=98.62  E-value=5.7e-08  Score=95.63  Aligned_cols=199  Identities=11%  Similarity=0.163  Sum_probs=133.6

Q ss_pred             ccccHHHHHhcCCCCCCCccceEecCC----CCChHHHHHHHHhhcCCccccCcchhhHHHhhHHhhcCcccccCCchHH
Q 009928            2 SKCGYIARLELQPSISNLGYDLKLENF----PGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLIS   77 (522)
Q Consensus         2 Sksg~l~rl~~~~~~~~~~~~i~L~df----PGGaeaFEl~akFCYG~~i~it~~NVa~LrCAAeyLeMtE~~~~gNL~~   77 (522)
                      ++|.||+.++...-.......|.|+++    .-.+++|+.+.+|+|++++.+++.||..|..||.+|+|++      |..
T Consensus        56 a~S~yF~~mf~~~~~e~~~~~i~l~~~~~~~~v~~~~f~~ll~~~Ytg~~~i~~~~v~~ll~~A~~l~i~~------L~~  129 (279)
T 3i3n_A           56 AATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPEPDTVEAVIEYMYTGRIRVSTGSVHEVLELADRFLLIR------LKE  129 (279)
T ss_dssp             HHCTTSGGGCCC--------EEECCCCSSTTCSCHHHHHHHHHHHHHSEEEEETTTHHHHHHHHHHTTCHH------HHH
T ss_pred             HcCHHHHHHhcCCCccccCCeEEeccccccCCCCHHHHHHHHHhhCcCCcccCHHHHHHHHHHHHHHCcHH------HHH
Confidence            478999999875322223458899876    4579999999999999999999999999999999999986      999


Q ss_pred             HHHHHhhhhhcCChHHHHHHHhhhccccchhhhhc---hHHHHHHHHHHHhccCCcccccccCCCCceehhccccChHHH
Q 009928           78 KTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQ---IVRRCCDSIAWKASRENSTTEDIANRQGWWFDDVATLGIDHF  154 (522)
Q Consensus        78 ktE~fL~~vvl~sW~dsi~vL~sce~llp~aE~l~---iv~RCidsla~ka~~~~~~~~~~~~~~dWW~eDl~~L~~~~f  154 (522)
                      .++.||.+.+-.         .+|-.++.+|+..+   +...|.+-|+.....       +     +-.++...|+.+..
T Consensus       130 ~c~~~L~~~l~~---------~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~~-------v-----~~~~~f~~L~~~~l  188 (279)
T 3i3n_A          130 FCGEFLKKKLHL---------SNCVAIHSLAHMYTLSQLALKAADMIRRNFHK-------V-----IQDEEFYTLPFHLI  188 (279)
T ss_dssp             HHHHHHHHHCCT---------TTHHHHHHHHHHTTCHHHHHHHHHHHHHTHHH-------H-----TTSSGGGGSCHHHH
T ss_pred             HHHHHHHHcCCc---------chHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH-------H-----hcCcChhcCCHHHH
Confidence            999999885432         24555555666655   567777777643311       1     11256678888777


Q ss_pred             HHHHHHHHhcC--CC-chhHHHHHHHHHHhhcCCCCCCccchHhHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHhcCC
Q 009928          155 MRIITTIKVKG--TK-PEIIGKCIMHYAKKWLPGKEEVSVGQKEQRTIIENLVNLLPHQDEGVSCKFFLQMLKMAMVYNA  231 (522)
Q Consensus       155 ~rvi~am~~~g--~~-~~~i~~~l~~Ya~k~l~~~~~~~~~~~~qr~llE~iv~lLP~~k~~vsc~fL~~LLR~A~~l~a  231 (522)
                      ..++..   -.  ++ ...|-.+++.|++.-          ....+..+..+...+-  =..+|..+|..+++..-.+..
T Consensus       189 ~~lL~~---d~L~v~sE~~vf~av~~W~~~~----------~~~r~~~~~~ll~~VR--f~l~~~~~L~~~v~~~~l~~~  253 (279)
T 3i3n_A          189 RDWLSD---LEITVDSEEVLFETVLKWVQRN----------AEERERYFEELFKLLR--LSQMKPTYLTRHVKPERLVAN  253 (279)
T ss_dssp             HHHHTC---SSCCCSCHHHHHHHHHHHHHTT----------HHHHTTTHHHHHTTSC--GGGSCHHHHHHTTTTSHHHHT
T ss_pred             HHHhcC---cCCCCCCHHHHHHHHHHHHHcC----------HHHHHHHHHHHHHhcC--CCCCCHHHHHHHhhccchhcC
Confidence            766543   32  33 445666666555521          1122233344433321  145889999999988888889


Q ss_pred             CHHHHHHHHHH
Q 009928          232 SPALISELEKR  242 (522)
Q Consensus       232 s~~cr~~LE~r  242 (522)
                      ++.|+.-|..-
T Consensus       254 ~~~c~~~l~ea  264 (279)
T 3i3n_A          254 NEVCVKLVADA  264 (279)
T ss_dssp             CHHHHHHHHHH
T ss_pred             CHHHHHHHHHH
Confidence            99998877543
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Back     alignment and structure
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Back     alignment and structure
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Back     alignment and structure
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Back     alignment and structure
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A Back     alignment and structure
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Back     alignment and structure
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Back     alignment and structure
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0 Back     alignment and structure
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Back     alignment and structure
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E* Back     alignment and structure
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A* Back     alignment and structure
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D Back     alignment and structure
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens} Back     alignment and structure
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A* Back     alignment and structure
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus} Back     alignment and structure
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query522
d1buoa_121 Promyelocytic leukaemia zinc finger (PLZF) protein 98.36
d1r29a_122 B-cell lymphoma 6 (Bcl6) protein BTB domain {Human 98.36
d1hv2a_99 Elongin C {Baker's yeast (Saccharomyces cerevisiae 80.18
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=2e-07  Score=80.05  Aligned_cols=72  Identities=18%  Similarity=0.288  Sum_probs=64.0

Q ss_pred             ccccHHHHHhcCCCCCCCccceEecCCCCChHHHHHHHHhhcCCccccCcchhhHHHhhHHhhcCcccccCCchHHHHHH
Q 009928            2 SKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEA   81 (522)
Q Consensus         2 Sksg~l~rl~~~~~~~~~~~~i~L~dfPGGaeaFEl~akFCYG~~i~it~~NVa~LrCAAeyLeMtE~~~~gNL~~ktE~   81 (522)
                      ++|+|++.++.+.     ..++.+++++  |++|+.+.+|+|.+++++++.||..+..||++|+|.+      |...++.
T Consensus        49 a~S~~F~~lf~~~-----~~~i~~~~v~--~~~f~~ll~~~Ytg~i~l~~~~v~~ll~~A~~l~~~~------L~~~C~~  115 (121)
T d1buoa_          49 CTSKMFEILFHRN-----SQHYTLDFLS--PKTFQQILEYAYTATLQAKAEDLDDLLYAAEILEIEY------LEEQCLK  115 (121)
T ss_dssp             HHCHHHHHHTTSC-----CSEEEECSSC--HHHHHHHHHHHHHSCCCCCGGGHHHHHHHHHHHTCHH------HHHHHHH
T ss_pred             ccChhhhhhccCc-----cceeecCCCC--HHHHHHHHHheEccccCCcHHHHHHHHHHHHHhCCHH------HHHHHHH
Confidence            5799999999642     3478898876  8999999999999999999999999999999999986      9999999


Q ss_pred             Hhhhh
Q 009928           82 FLTLV   86 (522)
Q Consensus        82 fL~~v   86 (522)
                      ||..+
T Consensus       116 ~L~~i  120 (121)
T d1buoa_         116 MLETI  120 (121)
T ss_dssp             HHHHH
T ss_pred             HHHhC
Confidence            99764
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure