Citrus Sinensis ID: 009951

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-
MARRGGSGGGAVFGIGYCLVLVLVLVYSRICMSARSDKETRQRFYGNLVNTTEEDSGDGSIAKMFDRVLEKEFPDNEQSSGSDGSSFNSSVADQQAVLETVAKITHEKMKRNDTQEANGTRPFQFQDVFFSDQEDSDDEMTLIDKKDNVFVMSNKKSKYPVLQVDLRLISDLVVVIVSAAIGGIIFSCLGQPVIVGYLLAGSIIGPGGLKFISELVQLCGAKLSEGVFVGSFLSMSSTAVVVKFLVEQNSNNALHGQVTIGTLILQDCAVGLLFALLPVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSILSWSFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDKLGLSLELGSFMAGVMISTTDFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTKLFGYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLLLGTTALSLVTTPLLFKLIPNVMNLGILLHWFPSEGTPRSEAHRGLRF
cccccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccc
cccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccccccccccccccHHHHHHHHHHHHccccccccccccccccccHHHHHHEHHHEEEEcccccccccccccccccccEEEEEEcccccccccccEEEEccccEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEHHHHHEEccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHcccc
marrggsgggavFGIGYCLVLVLVLVYSRICMSARSDKETRQRFYGNLvntteedsgdgsIAKMFDRVLekefpdneqssgsdgssfnssvADQQAVLETVAKITHEKmkrndtqeangtrpfqfqdvffsdqedsddemtlidkkdnvfvmsnkkskypvlQVDLRLISDLVVVIVSAAIGGIIFSCLGQPVIVGYLLagsiigpggLKFISELVQLCGAKLSEGVFVGSFLSMSSTAVVVKFLVEQnsnnalhgqvtIGTLILQDCAVGLLFALLpvlggnsglLQGMVSMGKLLLVLSIYLTVTSILSWSFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDKLGLSLELGSFMAGVMISTTDFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTKLFGYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLLLGTTALSLVTTPLLFKLIPNVMNLGILlhwfpsegtprseahrglrf
marrggsgggavFGIGYCLVLVLVLVYSRICMsarsdketrqrFYGNlvntteedsgdgsIAKMFDRVLEKEFPDNEQSSGSDGSSFNSSVADQQAVLETVAKITHEkmkrndtqeangtrpfqFQDVFFSDQEDSDDEMTLIDKKDNVFVMSNKKSKYPVLQVDLRLISDLVVVIVSAAIGGIIFSCLGQPVIVGYLLAGSIIGPGGLKFISELVQLCGAKLSEGVFVGSFLSMSSTAVVVKFLVEQNSNNALHGQVTIGTLILQDCAVGLLFALLPVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSILSWSFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDKLGLSLELGSFMAGVMISTTDFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTKLFGYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLLLGTTALSLVTTPLLFKLIPNVMNLGILLHwfpsegtprseahrglrf
MARRggsgggavfgigYClvlvlvlvYSRICMSARSDKETRQRFYGNLVNTTEEDSGDGSIAKMFDRVLEKEFPDNEQssgsdgssfnssVADQQAVLETVAKITHEKMKRNDTQEANGTRPFQFQDVFFSDQEDSDDEMTLIDKKDNVFVMSNKKSKYPVLQVDLRLISDLvvvivsaaiggiiFSCLGQPVIVGYLLAGSIIGPGGLKFISELVQLCGAKLSEGVFVGSFLSMSSTAVVVKFLVEQNSNNALHGQVTIGTLILQDCAVGLLFALLPVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSILSWSFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDKLGLSLELGSFMAGVMISTTDFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHvdillasvilviivKTAVGTIVTKLFGYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYllllgttalslvttPLLFKLIPNVMNLGILLHWFPSEGTPRSEAHRGLRF
*********GAVFGIGYCLVLVLVLVYSRICMSA********RFYGNLV*********************************************************************************************IDKKDNVFVMSNKKSKYPVLQVDLRLISDLVVVIVSAAIGGIIFSCLGQPVIVGYLLAGSIIGPGGLKFISELVQLCGAKLSEGVFVGSFLSMSSTAVVVKFLVEQNSNNALHGQVTIGTLILQDCAVGLLFALLPVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSILSWSFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDKLGLSLELGSFMAGVMISTTDFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTKLFGYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLLLGTTALSLVTTPLLFKLIPNVMNLGILLHWFP***************
************FGIGYCLVLVLVLVYSRICM********************************FDRV***************************AVLETVA**************************FFSDQEDSDDEMTLIDKKDNVFVMSNKKSKYPVLQVDLRLISDLVVVIVSAAIGGIIFSCLGQPVIVGYLLAGSIIGPGGLKFISELVQLCGAKLSEGVFVGSFLSMSSTAVVVKFLVE********GQVTIGTLILQDCAVGLLFALLPVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSILSWSFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDKLGLSLELGSFMAGVMISTTDFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTKLFGYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLLLGTTALSLVTTPLLFKLIPNVMNLGI*********************
********GGAVFGIGYCLVLVLVLVYSRICMSARSDKETRQRFYGNLVNTTEEDSGDGSIAKMFDRVLEKEF*******************DQQAVLETVAKITHEKMKRNDTQEANGTRPFQFQDVFFSDQEDSDDEMTLIDKKDNVFVMSNKKSKYPVLQVDLRLISDLVVVIVSAAIGGIIFSCLGQPVIVGYLLAGSIIGPGGLKFISELVQLCGAKLSEGVFVGSFLSMSSTAVVVKFLVEQNSNNALHGQVTIGTLILQDCAVGLLFALLPVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSILSWSFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDKLGLSLELGSFMAGVMISTTDFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTKLFGYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLLLGTTALSLVTTPLLFKLIPNVMNLGILLHWFPSE*************
********GGAVFGIGYCLVLVLVLVYSRICMSARSDKETRQRFYGNLVNT********SIAKMFDRVLEKEFP************FNSSVADQQAVLETVAKITHE************TRPFQFQDVFFSDQEDSDDEMTLIDKKDNVFVMSNKKSKYPVLQVDLRLISDLVVVIVSAAIGGIIFSCLGQPVIVGYLLAGSIIGPGGLKFISELVQLCGAKLSEGVFVGSFLSMSSTAVVVKFLVEQNSNNALHGQVTIGTLILQDCAVGLLFALLPVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSILSWSFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDKLGLSLELGSFMAGVMISTTDFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTKLFGYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLLLGTTALSLVTTPLLFKLIPNVMNLGILLHWFP***************
oooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooo
oooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MARRGGSGGGAVFGIGYCLVLVLVLVYSRICMSARSDKETRQRFYGNLVNTTEEDSGDGSIAKMFDRVLEKEFPDNEQSSGSDGSSFNSSVADQQAVLETVAKITHEKMKRNDTQEANGTRPFQFQDVFFSDQEDSDDEMTLIDKKDNVFVMSNKKSKYPVLQVDLRLISDLVVVIVSAAIGGIIFSCLGQPVIVGYLLAGSIIGPGGLKFISELVQLCGAKLSEGVFVGSFLSMSSTAVVVKFLVEQNSNNALHGQVTIGTLILQDCAVGLLFALLPVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSILSWSFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDKLGLSLELGSFMAGVMISTTDFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTKLFGYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLLLGTTALSLVTTPLLFKLIPNVMNLGILLHWFPSEGTPRSEAHRGLRF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query521 2.2.26 [Sep-21-2011]
Q8VYR9568 K(+) efflux antiporter 5 yes no 0.923 0.846 0.752 0.0
Q9ZUN3592 K(+) efflux antiporter 4 no no 0.909 0.800 0.620 1e-174
B5X0N6597 K(+) efflux antiporter 6 no no 0.859 0.750 0.646 1e-172
A8AQP0 601 Glutathione-regulated pot yes no 0.600 0.520 0.323 7e-30
B2VK47 601 Glutathione-regulated pot yes no 0.608 0.527 0.295 6e-29
B5FJN1 601 Glutathione-regulated pot yes no 0.568 0.492 0.296 2e-28
Q8ZLL3 601 Glutathione-regulated pot yes no 0.568 0.492 0.296 2e-28
A9MT17 601 Glutathione-regulated pot yes no 0.568 0.492 0.296 2e-28
B5F8G9 601 Glutathione-regulated pot yes no 0.568 0.492 0.296 2e-28
B5R2A8 601 Glutathione-regulated pot yes no 0.568 0.492 0.296 2e-28
>sp|Q8VYR9|KEA5_ARATH K(+) efflux antiporter 5 OS=Arabidopsis thaliana GN=KEA5 PE=2 SV=1 Back     alignment and function desciption
 Score =  803 bits (2074), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/534 (75%), Positives = 448/534 (83%), Gaps = 53/534 (9%)

Query: 34  ARSDKETRQRFYGNLVNTTEEDSGDGSIAKMFDRVLEKEFPDNEQSSGSDGSSFNSSVAD 93
           ARSD+ETR+RFYGN+VN+T   +G+GSIAKMFDRVLEKEF +N+   GSDG+SFNSSVAD
Sbjct: 21  ARSDEETRERFYGNVVNSTAPGNGEGSIAKMFDRVLEKEFSENDSPEGSDGASFNSSVAD 80

Query: 94  QQAVLETVAKITHEKMKRNDTQEANGTRPFQFQDVFFSDQEDSDDEMTLIDKKDNVFVMS 153
           QQA +ETVAK+THEK KRNDTQE NGTRPFQ QDVF  + EDSDD MTLIDKK+NVFVMS
Sbjct: 81  QQAEIETVAKVTHEKGKRNDTQENNGTRPFQLQDVFSLENEDSDD-MTLIDKKNNVFVMS 139

Query: 154 NKKSKYPVLQVDLRLISDLVVVIVSAAIGGIIFSCLGQPVIVGYLLAGSIIGPGGLKFIS 213
           NKKSKYP+LQVDLRLISDLVV+IV AAIGGI+FSCLGQPVIVGYLLAGSIIGPGGLKFIS
Sbjct: 140 NKKSKYPILQVDLRLISDLVVIIVFAAIGGIVFSCLGQPVIVGYLLAGSIIGPGGLKFIS 199

Query: 214 ELVQ----------------------------------------------------LCGA 221
           E+VQ                                                    LCGA
Sbjct: 200 EMVQVETVAQFGVVFLLFALGLEFSMTKLKVVGPVAVLGGLLQIVLLMFLCGVTALLCGA 259

Query: 222 KLSEGVFVGSFLSMSSTAVVVKFLVEQNSNNALHGQVTIGTLILQDCAVGLLFALLPVLG 281
           +LSEG+FVG+FLSMSSTAVVVKFLVE+NS ++LHGQVTIG LI QDC VGLLFALLPVLG
Sbjct: 260 RLSEGIFVGAFLSMSSTAVVVKFLVERNSTSSLHGQVTIGILIFQDCVVGLLFALLPVLG 319

Query: 282 GNSGLLQGMVSMGKLLLVLSIYLTVTSILSWSFVPRFLKLMIQLSSQTNELYQLAAVAFC 341
           GNSGLLQG++SMGKLLL+LSIYLTV S+L+WSFVPRFLKLMIQLSSQTNELYQLAAVAFC
Sbjct: 320 GNSGLLQGIISMGKLLLILSIYLTVASLLTWSFVPRFLKLMIQLSSQTNELYQLAAVAFC 379

Query: 342 LLSAWCSDKLGLSLELGSFMAGVMISTTDFAKHTLDQVEPIRNLFAALFLSSIGMLIHVH 401
           LLSAWCSDKLGLSLELGSF+AGVM+STT+FA+HTL+QVEPIRNLFAALFLSSIGMLI+VH
Sbjct: 380 LLSAWCSDKLGLSLELGSFVAGVMLSTTEFAQHTLEQVEPIRNLFAALFLSSIGMLINVH 439

Query: 402 FLWNHVDILLASVILVIIVKTAVGTIVTKLFGYSMRTSFLVGVSLAQIGEFAFVLLSRAS 461
           FLWNHVDILLASVILVI++KTA+  +V K F Y+MR SF VGV LAQIGEFAFVLLSRAS
Sbjct: 440 FLWNHVDILLASVILVIVIKTAIAAVVVKAFRYNMRISFHVGVLLAQIGEFAFVLLSRAS 499

Query: 462 NLHLVEGKMYLLLLGTTALSLVTTPLLFKLIPNVMNLGILLHWFPSEGTPRSEA 515
           NLH++EGKMYLLLLGTTALSLVTTPLLFKLIP+ MNLG+LL WFPSE +  +E+
Sbjct: 500 NLHVIEGKMYLLLLGTTALSLVTTPLLFKLIPSAMNLGVLLRWFPSENSSPNES 553
May operate as a K(+)/H(+) antiporter.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9ZUN3|KEA4_ARATH K(+) efflux antiporter 4 OS=Arabidopsis thaliana GN=KEA4 PE=2 SV=2 Back     alignment and function description
>sp|B5X0N6|KEA6_ARATH K(+) efflux antiporter 6 OS=Arabidopsis thaliana GN=KEA6 PE=2 SV=1 Back     alignment and function description
>sp|A8AQP0|KEFB_CITK8 Glutathione-regulated potassium-efflux system protein KefB OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=kefB PE=3 SV=1 Back     alignment and function description
>sp|B2VK47|KEFB_ERWT9 Glutathione-regulated potassium-efflux system protein KefB OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=kefB PE=3 SV=1 Back     alignment and function description
>sp|B5FJN1|KEFB_SALDC Glutathione-regulated potassium-efflux system protein KefB OS=Salmonella dublin (strain CT_02021853) GN=kefB PE=3 SV=1 Back     alignment and function description
>sp|Q8ZLL3|KEFB_SALTY Glutathione-regulated potassium-efflux system protein KefB OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=kefB PE=3 SV=1 Back     alignment and function description
>sp|A9MT17|KEFB_SALPB Glutathione-regulated potassium-efflux system protein KefB OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=kefB PE=3 SV=1 Back     alignment and function description
>sp|B5F8G9|KEFB_SALA4 Glutathione-regulated potassium-efflux system protein KefB OS=Salmonella agona (strain SL483) GN=kefB PE=3 SV=1 Back     alignment and function description
>sp|B5R2A8|KEFB_SALEP Glutathione-regulated potassium-efflux system protein KefB OS=Salmonella enteritidis PT4 (strain P125109) GN=kefB PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query521
224120182580 potassium efflux antiporter [Populus tri 0.965 0.867 0.732 0.0
297795979569 hypothetical protein ARALYDRAFT_495238 [ 0.950 0.869 0.735 0.0
18423310568 K(+) efflux antiporter 5 [Arabidopsis th 0.923 0.846 0.752 0.0
186531286565 K(+) efflux antiporter 5 [Arabidopsis th 0.930 0.858 0.749 0.0
356561749576 PREDICTED: K(+) efflux antiporter 5-like 0.957 0.866 0.754 0.0
356529340576 PREDICTED: K(+) efflux antiporter 5-like 0.957 0.866 0.758 0.0
449460782578 PREDICTED: K(+) efflux antiporter 5-like 0.973 0.877 0.745 0.0
225455594577 PREDICTED: K(+) efflux antiporter 5 [Vit 0.952 0.859 0.777 0.0
255539661565 Glutathione-regulated potassium-efflux s 0.934 0.861 0.767 0.0
10177870562 potassium/proton antiporter-like protein 0.915 0.848 0.729 0.0
>gi|224120182|ref|XP_002318266.1| potassium efflux antiporter [Populus trichocarpa] gi|222858939|gb|EEE96486.1| potassium efflux antiporter [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  810 bits (2093), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/576 (73%), Positives = 458/576 (79%), Gaps = 73/576 (12%)

Query: 3   RRGGSGGGAVFGIGYCLVLVLVLVYSRICMSARSDKETRQRFYGNLVNTTEEDSGDGSIA 62
           +RGG      F  G+       L+   +C++ RSDKE R+RFYGNLVN++  D+G+GSIA
Sbjct: 2   KRGG------FACGFGFSRCCCLLLILVCVNGRSDKEVRERFYGNLVNSSAPDNGEGSIA 55

Query: 63  KMFDRVLEKEFPDNEQSSGSDGSSFNSSVADQQAVLETVAKITHEKMKRNDTQEANGTRP 122
           KMFDRVLEKEF DN+Q  GSDGSSFN+SVADQQAVLETVAKITHEK K+NDTQ A   +P
Sbjct: 56  KMFDRVLEKEFSDNDQPEGSDGSSFNNSVADQQAVLETVAKITHEKGKKNDTQVA---KP 112

Query: 123 FQFQDVFFSDQEDSDDEMTLIDKKDNVFVMSNKKSKYPVLQVDLRLISDLVVVIVSAAIG 182
           FQ QDVF  + E+S+D  TLIDKKDNVFVMSNKKSKYP+LQVDLRLISDLVV IVSAAIG
Sbjct: 113 FQLQDVFSLENEESEDMATLIDKKDNVFVMSNKKSKYPILQVDLRLISDLVVAIVSAAIG 172

Query: 183 GIIFSCLGQPVIVGYLLAGSIIGPGGLKFISELVQ------------------------- 217
           GIIFSCLGQPVIVGYLLAGSIIGPGGL FISE+VQ                         
Sbjct: 173 GIIFSCLGQPVIVGYLLAGSIIGPGGLNFISEMVQVETVAQFGVVFLLFALGLEFSLTKL 232

Query: 218 ---------------------------LCGAKLSEGVFVGSFLSMSSTAVVVKFLVEQNS 250
                                      +CGAKLSEGVFVGSFLSMSSTAVVVKFL+E+NS
Sbjct: 233 KVVGPVAVLGGMLQIVIFMCLCGIVAAMCGAKLSEGVFVGSFLSMSSTAVVVKFLIERNS 292

Query: 251 NNALHGQVTIGTLILQDCAVGLLFALLPVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSIL 310
           +N+LHGQVTIGTLI QDCA+GLLFALLPVLGGNSG LQGM+SMGKLLLVLS+YLT  S +
Sbjct: 293 SNSLHGQVTIGTLIFQDCAIGLLFALLPVLGGNSGALQGMISMGKLLLVLSVYLTAASFM 352

Query: 311 SWSFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDKLGLSLELGSFMAGVMISTTD 370
           SWSFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDKLGLSLELGSF+AG+MISTTD
Sbjct: 353 SWSFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDKLGLSLELGSFVAGIMISTTD 412

Query: 371 FAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTK 430
           FA+HTL+QVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVILVI VKT +   VTK
Sbjct: 413 FAQHTLEQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIAVKTTIAAAVTK 472

Query: 431 LFGYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLLLGTTALSLVTTPLLFK 490
            FGYS+RTSF VGV LAQIGEFAFVLLSRASNLHL+EGKMYLLLLGTTALSLVTTPLLFK
Sbjct: 473 AFGYSIRTSFHVGVLLAQIGEFAFVLLSRASNLHLIEGKMYLLLLGTTALSLVTTPLLFK 532

Query: 491 LIPNVMNLGILLHWFPSE------------GTPRSE 514
           LIPNVMNLGILL WFPSE            GTP  E
Sbjct: 533 LIPNVMNLGILLQWFPSESSTPNKWFPSENGTPNEE 568

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297795979|ref|XP_002865874.1| hypothetical protein ARALYDRAFT_495238 [Arabidopsis lyrata subsp. lyrata] gi|297311709|gb|EFH42133.1| hypothetical protein ARALYDRAFT_495238 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18423310|ref|NP_568763.1| K(+) efflux antiporter 5 [Arabidopsis thaliana] gi|75304451|sp|Q8VYR9.1|KEA5_ARATH RecName: Full=K(+) efflux antiporter 5; Short=AtKEA5 gi|17979127|gb|AAL49821.1| putative potassium/proton antiporter protein [Arabidopsis thaliana] gi|21537045|gb|AAM61386.1| potassium/proton antiporter-like protein [Arabidopsis thaliana] gi|332008734|gb|AED96117.1| K(+) efflux antiporter 5 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|186531286|ref|NP_001119415.1| K(+) efflux antiporter 5 [Arabidopsis thaliana] gi|332008735|gb|AED96118.1| K(+) efflux antiporter 5 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356561749|ref|XP_003549141.1| PREDICTED: K(+) efflux antiporter 5-like [Glycine max] Back     alignment and taxonomy information
>gi|356529340|ref|XP_003533253.1| PREDICTED: K(+) efflux antiporter 5-like [Glycine max] Back     alignment and taxonomy information
>gi|449460782|ref|XP_004148124.1| PREDICTED: K(+) efflux antiporter 5-like [Cucumis sativus] gi|449499664|ref|XP_004160879.1| PREDICTED: K(+) efflux antiporter 5-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225455594|ref|XP_002269354.1| PREDICTED: K(+) efflux antiporter 5 [Vitis vinifera] gi|296084106|emb|CBI24494.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255539661|ref|XP_002510895.1| Glutathione-regulated potassium-efflux system protein kefB, putative [Ricinus communis] gi|223550010|gb|EEF51497.1| Glutathione-regulated potassium-efflux system protein kefB, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|10177870|dbj|BAB11240.1| potassium/proton antiporter-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query521
TAIR|locus:2165326568 KEA5 "K+ efflux antiporter 5" 0.571 0.524 0.755 2e-184
TAIR|locus:2050382592 KEA4 "K+ efflux antiporter 4" 0.562 0.494 0.687 3.4e-143
TAIR|locus:2181910597 KEA6 "K+ efflux antiporter 6" 0.566 0.494 0.677 3.8e-142
TIGR_CMR|DET_1627 567 DET_1627 "sodium/hydrogen exch 0.495 0.455 0.330 3.5e-32
UNIPROTKB|A5D7N7677 TMCO3 "Uncharacterized protein 0.510 0.392 0.284 1e-28
UNIPROTKB|F1RN34678 TMCO3 "Uncharacterized protein 0.512 0.393 0.289 2.4e-28
UNIPROTKB|P45522 601 kefB [Escherichia coli K-12 (t 0.545 0.472 0.302 3.6e-27
MGI|MGI:2444946678 Tmco3 "transmembrane and coile 0.510 0.392 0.262 7.2e-27
UNIPROTKB|Q6UWJ1677 TMCO3 "Transmembrane and coile 0.514 0.395 0.264 5.9e-26
TIGR_CMR|CPS_1593 655 CPS_1593 "putative glutathione 0.460 0.366 0.306 7.5e-26
TAIR|locus:2165326 KEA5 "K+ efflux antiporter 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1148 (409.2 bits), Expect = 2.0e-184, Sum P(2) = 2.0e-184
 Identities = 225/298 (75%), Positives = 252/298 (84%)

Query:   218 LCGAKLSEGVFVGSFLSMSSTAVVVKFLVEQNSNNALHGQVTIGTLILQDCAVGLLFALL 277
             LCGA+LSEG+FVG+FLSMSSTAVVVKFLVE+NS ++LHGQVTIG LI QDC VGLLFALL
Sbjct:   256 LCGARLSEGIFVGAFLSMSSTAVVVKFLVERNSTSSLHGQVTIGILIFQDCVVGLLFALL 315

Query:   278 PVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSILSWSFVPRFLKLMIQLSSQTNELYQLAA 337
             PVLGGNSGLLQG++SMGKLLL+LSIYLTV S+L+WSFVPRFLKLMIQLSSQTNELYQLAA
Sbjct:   316 PVLGGNSGLLQGIISMGKLLLILSIYLTVASLLTWSFVPRFLKLMIQLSSQTNELYQLAA 375

Query:   338 VAFCLLSAWCSDKLGLSLELGSFMAGVMISTTDFAKHTLDQVEPIRNLFAALFLSSIGML 397
             VAFCLLSAWCSDKLGLSLELGSF+AGVM+STT+FA+HTL+QVEPIRNLFAALFLSSIGML
Sbjct:   376 VAFCLLSAWCSDKLGLSLELGSFVAGVMLSTTEFAQHTLEQVEPIRNLFAALFLSSIGML 435

Query:   398 IHVHFLWNHXXXXXXXXXXXXXXKTAVGTIVTKLFGYSMRTSFLVGVSLAQIGEFAFVLL 457
             I+VHFLWNH              KTA+  +V K F Y+MR SF VGV LAQIGEFAFVLL
Sbjct:   436 INVHFLWNHVDILLASVILVIVIKTAIAAVVVKAFRYNMRISFHVGVLLAQIGEFAFVLL 495

Query:   458 SRASNLHLVEGKMYXXXXXXXXXXXXXXPLLFKLIPNVMNLGILLHWFPSEGTPRSEA 515
             SRASNLH++EGKMY              PLLFKLIP+ MNLG+LL WFPSE +  +E+
Sbjct:   496 SRASNLHVIEGKMYLLLLGTTALSLVTTPLLFKLIPSAMNLGVLLRWFPSENSSPNES 553
GO:0006812 "cation transport" evidence=IEA
GO:0006813 "potassium ion transport" evidence=ISS
GO:0015079 "potassium ion transmembrane transporter activity" evidence=ISS
GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA
GO:0015386 "potassium:hydrogen antiporter activity" evidence=ISS;NAS
GO:0016021 "integral to membrane" evidence=IEA
GO:0055085 "transmembrane transport" evidence=IEA
GO:0006814 "sodium ion transport" evidence=RCA
GO:0010351 "lithium ion transport" evidence=RCA
TAIR|locus:2050382 KEA4 "K+ efflux antiporter 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2181910 KEA6 "K+ efflux antiporter 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|DET_1627 DET_1627 "sodium/hydrogen exchanger family protein" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
UNIPROTKB|A5D7N7 TMCO3 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1RN34 TMCO3 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|P45522 kefB [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
MGI|MGI:2444946 Tmco3 "transmembrane and coiled-coil domains 3" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q6UWJ1 TMCO3 "Transmembrane and coiled-coil domain-containing protein 3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_1593 CPS_1593 "putative glutathione-regulated potassium-efflux system protein" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8VYR9KEA5_ARATHNo assigned EC number0.75280.92320.8468yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query521
pfam00999370 pfam00999, Na_H_Exchanger, Sodium/hydrogen exchang 9e-53
COG0475397 COG0475, KefB, Kef-type K+ transport systems, memb 3e-50
COG4651408 COG4651, RosB, Kef-type K+ transport system, predi 5e-36
PRK03659 601 PRK03659, PRK03659, glutathione-regulated potassiu 3e-35
PRK10669 558 PRK10669, PRK10669, putative cation:proton antipor 2e-33
TIGR00932273 TIGR00932, 2a37, transporter, monovalent cation:pr 3e-29
PRK03562 621 PRK03562, PRK03562, glutathione-regulated potassiu 1e-25
pfam09073424 pfam09073, BUD22, BUD22 2e-05
>gnl|CDD|216235 pfam00999, Na_H_Exchanger, Sodium/hydrogen exchanger family Back     alignment and domain information 
 Score =  182 bits (465), Expect = 9e-53
 Identities = 93/331 (28%), Positives = 163/331 (49%), Gaps = 26/331 (7%)

Query: 162 LQVDLRLISDLVVVIVSAAIGGIIFSCLGQPVIVGYLLAGSIIGPGGLKFISELVQLCGA 221
           L++DLR +      I+  A+ G++      P ++G LLA              L+   G 
Sbjct: 64  LELDLRELRKNGKSILLLALLGVLI-----PFLLGLLLA--------------LLGGLGI 104

Query: 222 KLSEGVFVGSFLSMSSTAVVVKFLVEQNSNNALHGQVTIGTLILQDCAVGLLFALLPVLG 281
            L E +  G+ LS +S  VV+  L E+   N   G + +G  +L D    +L A+L  L 
Sbjct: 105 PLLEALLFGAALSATSPVVVLAILKERGRLNTRLGTLILGESVLNDAVAVVLLAVLLALA 164

Query: 282 GNSGLLQGMVSMGKLLLVLSIYLTVTSILSWSFVPRFLKLMIQLSSQTNELYQLAAVAFC 341
           G  GL     S   LLL++ + + +  +L        L+L+ + +S   EL  L  +A  
Sbjct: 165 GVGGL-----SDLGLLLLIFLVVALGGLLLGLVFGWLLRLITRFTSGDRELEVLLVLALA 219

Query: 342 LLSAWCSDKLGLSLELGSFMAGVMISTTDFAKHTLDQVEPIRN-LFAALFLSSIGMLIHV 400
           LL+A  ++ LGLS  LG+F+AG+++S   FA    +++EP    LF  LF  S+G+ + +
Sbjct: 220 LLAALLAELLGLSGILGAFLAGLVLSNYAFANELSEKLEPFGYGLFLPLFFVSVGLSLDL 279

Query: 401 H-FLWNHVDILLASVILVIIVKTAVGTIVTKLFGYSMRTSFLVGVSLAQIGEFAFVLLSR 459
              L + + ++L  ++ +++ K     ++ +L G S+R + +VG    Q G  +  L + 
Sbjct: 280 SSLLLSLLLLVLLLLVAILLGKLLGVFLLARLLGLSLREALIVGFGGLQRGAVSLALAAI 339

Query: 460 ASNLHLVEGKMYLLLLGTTALSLVTTPLLFK 490
              L L++ ++Y LL+    L+ +  PLL K
Sbjct: 340 GLQLGLIDRELYTLLVAVVLLTTLLKPLLKK 370

Na/H antiporters are key transporters in maintaining the pH of actively metabolising cells. The molecular mechanisms of antiport are unclear. These antiporters contain 10-12 transmembrane regions (M) at the amino-terminus and a large cytoplasmic region at the carboxyl terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. Length = 370
>gnl|CDD|223551 COG0475, KefB, Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|226998 COG4651, RosB, Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|179625 PRK03659, PRK03659, glutathione-regulated potassium-efflux system protein KefB; Provisional Back     alignment and domain information
>gnl|CDD|182633 PRK10669, PRK10669, putative cation:proton antiport protein; Provisional Back     alignment and domain information
>gnl|CDD|233195 TIGR00932, 2a37, transporter, monovalent cation:proton antiporter-2 (CPA2) family Back     alignment and domain information
>gnl|CDD|235131 PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional Back     alignment and domain information
>gnl|CDD|220102 pfam09073, BUD22, BUD22 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 521
PRK03562 621 glutathione-regulated potassium-efflux system prot 100.0
PRK10669 558 putative cation:proton antiport protein; Provision 100.0
PRK03659 601 glutathione-regulated potassium-efflux system prot 100.0
COG0475397 KefB Kef-type K+ transport systems, membrane compo 100.0
COG4651408 RosB Kef-type K+ transport system, predicted NAD-b 100.0
PLN03159 832 cation/H(+) antiporter 15; Provisional 100.0
PRK05326 562 potassium/proton antiporter; Reviewed 100.0
PF00999380 Na_H_Exchanger: Sodium/hydrogen exchanger family; 99.97
KOG1650 769 consensus Predicted K+/H+-antiporter [Inorganic io 99.97
TIGR00932273 2a37 transporter, monovalent cation:proton antipor 99.96
TIGR00844 810 c_cpa1 na(+)/h(+) antiporter. This model is specif 99.87
TIGR00831525 a_cpa1 Na+/H+ antiporter, bacterial form. This mod 99.84
COG0025429 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorg 99.8
COG3263 574 NhaP-type Na+/H+ and K+/H+ antiporters with a uniq 99.78
TIGR00840 559 b_cpa1 sodium/hydrogen exchanger 3. This model is 99.73
PRK14853423 nhaA pH-dependent sodium/proton antiporter; Provis 99.45
KOG1965575 consensus Sodium/hydrogen exchanger protein [Inorg 99.2
KOG4505467 consensus Na+/H+ antiporter [Inorganic ion transpo 99.15
TIGR00773373 NhaA Na+/H+ antiporter NhaA. These proteins are me 98.9
PRK14856438 nhaA pH-dependent sodium/proton antiporter; Provis 98.41
PRK09560389 nhaA pH-dependent sodium/proton antiporter; Review 98.25
PRK14855423 nhaA pH-dependent sodium/proton antiporter; Provis 98.22
PRK09561388 nhaA pH-dependent sodium/proton antiporter; Review 98.19
PRK14854383 nhaA pH-dependent sodium/proton antiporter; Provis 98.15
PF06965378 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IP 97.8
COG3004390 NhaA Na+/H+ antiporter [Inorganic ion transport an 97.78
TIGR00932273 2a37 transporter, monovalent cation:proton antipor 97.35
PRK03562 621 glutathione-regulated potassium-efflux system prot 97.28
PRK12460312 2-keto-3-deoxygluconate permease; Provisional 97.16
PRK03659 601 glutathione-regulated potassium-efflux system prot 97.05
COG0475 397 KefB Kef-type K+ transport systems, membrane compo 96.99
KOG1966 670 consensus Sodium/hydrogen exchanger protein [Inorg 96.98
PRK10669 558 putative cation:proton antiport protein; Provision 96.97
PRK05326 562 potassium/proton antiporter; Reviewed 96.56
PLN03159 832 cation/H(+) antiporter 15; Provisional 96.17
COG0786404 GltS Na+/glutamate symporter [Amino acid transport 96.15
PF05684378 DUF819: Protein of unknown function (DUF819); Inte 95.86
TIGR00831 525 a_cpa1 Na+/H+ antiporter, bacterial form. This mod 95.63
PF03601 305 Cons_hypoth698: Conserved hypothetical protein 698 95.63
TIGR00793314 kdgT 2-keto-3-deoxygluconate transporter. This fam 95.26
PF03812314 KdgT: 2-keto-3-deoxygluconate permease; InterPro: 95.11
COG2855 334 Predicted membrane protein [Function unknown] 94.98
TIGR00698 335 conserved hypothetical integral membrane protein. 94.73
TIGR00210398 gltS sodium--glutamate symport carrier (gltS). 94.37
TIGR00844 810 c_cpa1 na(+)/h(+) antiporter. This model is specif 94.34
PRK05274326 2-keto-3-deoxygluconate permease; Provisional 93.94
COG4651 408 RosB Kef-type K+ transport system, predicted NAD-b 92.79
TIGR00946321 2a69 he Auxin Efflux Carrier (AEC) Family. 92.71
PF03956191 DUF340: Membrane protein of unknown function (DUF3 92.52
PF00999 380 Na_H_Exchanger: Sodium/hydrogen exchanger family; 90.44
TIGR00783347 ccs citrate carrier protein, CCS family. These pro 89.96
TIGR03082156 Gneg_AbrB_dup membrane protein AbrB duplication. T 89.93
COG0679311 Predicted permeases [General function prediction o 89.62
PF05145318 AmoA: Putative ammonia monooxygenase; InterPro: IP 89.1
COG0025 429 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorg 88.33
COG1346230 LrgB Putative effector of murein hydrolase [Cell e 88.1
TIGR00210 398 gltS sodium--glutamate symport carrier (gltS). 87.53
PRK09903314 putative transporter YfdV; Provisional 86.39
COG0786 404 GltS Na+/glutamate symporter [Amino acid transport 83.65
PF03616368 Glt_symporter: Sodium/glutamate symporter; InterPr 83.22
COG3180 352 AbrB Putative ammonia monooxygenase [General funct 82.11
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.3e-44  Score=402.68  Aligned_cols=330  Identities=25%  Similarity=0.391  Sum_probs=288.4

Q ss_pred             hcHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHhhCcCCccchHHH------HH--------------------
Q 009951          164 VDLRLISDLVVVIVSAAIGGIIFSCLGQPVIVGYLLAGSIIGPGGLKFISEL------VQ--------------------  217 (521)
Q Consensus       164 ~d~~li~~l~lil~~a~i~g~l~~rlglP~ivGyIlaGilLGPsgLglI~~~------~q--------------------  217 (521)
                      .|++++.++.+++.++.+++++++|+|+|+++||+++|+++||+++|++++.      .|                    
T Consensus         2 ~~~~~l~~~~~~l~~a~i~~~l~~rl~lp~vlgyilaGillGP~~lg~i~~~~~i~~laelGvv~LlF~iGLEl~~~~l~   81 (621)
T PRK03562          2 MDSHTLIQALIYLGAAVLIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVTDVESILHFAEFGVVLMLFVIGLELDPQRLW   81 (621)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhCcccccCCCCHHHHHHHHHHHHHHHHHHHHhCcCHHHHH
Confidence            4678999999999999999999999999999999999999999999987521      11                    


Q ss_pred             --------------------------HhcCchHHHHHHHHHhhcccHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHH
Q 009951          218 --------------------------LCGAKLSEGVFVGSFLSMSSTAVVVKFLVEQNSNNALHGQVTIGTLILQDCAVG  271 (521)
Q Consensus       218 --------------------------l~G~~~~~al~iG~~ls~TStavv~~iL~e~~~l~s~~g~iiL~~avl~Dv~~~  271 (521)
                                                ++|+++..++++|.+++.|||++++++++|++..++++||.+++++++||++++
T Consensus        82 ~~~~~~~~~g~~qv~~~~~~~~~~~~~~g~~~~~al~ig~~la~SStaiv~~~L~e~~~l~t~~G~~~l~~ll~~Dl~~i  161 (621)
T PRK03562         82 KLRRSIFGGGALQMVACGGLLGLFCMLLGLRWQVALLIGLGLALSSTAIAMQAMNERNLMVTQMGRSAFAILLFQDIAAI  161 (621)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHHHHHHHHHHHHHH
Confidence                                      457899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHh
Q 009951          272 LLFALLPVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSILSWSFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDKL  351 (521)
Q Consensus       272 il~all~~l~~~~~~~~~~~sl~~~l~~l~~fllv~~vv~~~~~~~llr~l~~~~~~~~El~ll~~lal~~~~~~iae~l  351 (521)
                      +++++++.+....... ........+...++++++.+++++|+.+++++++.+.  +.+|.+...++.++++++++++++
T Consensus       162 ~ll~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~~~~--~~~e~~~~~~l~lv~~~a~la~~~  238 (621)
T PRK03562        162 PLVAMIPLLAASGAST-TLGAFALSALKVAGALALVVLGGRYVTRPALRFVARS--GLREVFTAVALFLVFGFGLLMEEV  238 (621)
T ss_pred             HHHHHHHHHccCCCcc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCchHHHHHHHHHHHHHHHHHHHh
Confidence            9999988776432110 1111112222233334445666789999999998763  568888888888899999999999


Q ss_pred             CchHHHHHHHHHHHhcCCCchhhHHHhhhcHHHHHHHHHHHHhcchhhHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009951          352 GLSLELGSFMAGVMISTTDFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTKL  431 (521)
Q Consensus       352 Gls~~LGAFlAGl~ls~~~~~~~l~~~le~i~~~f~piFF~~iGl~ld~~~l~~~~~~il~lvll~vl~K~l~~~l~~~~  431 (521)
                      |+|+.+|||+||+++++.++++++.++++|++++|+|+||+++||++|+..+.+++..++.++++.+++|++++++.+++
T Consensus       239 Gls~~lGAFlAGl~l~~~~~~~~le~~i~pf~~lll~lFFi~vG~~id~~~l~~~~~~il~~~~~~~~~K~~~~~~~~~~  318 (621)
T PRK03562        239 GLSMALGAFLAGVLLASSEYRHALESDIEPFKGLLLGLFFIAVGMSIDFGTLLENPLRILILLLGFLAIKIAMLWLLARP  318 (621)
T ss_pred             CccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999988877766666777899999999999999


Q ss_pred             hCCChHHHHHHHHHHhhHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 009951          432 FGYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLLLGTTALSLVTTPLLFKLIPNVM  496 (521)
Q Consensus       432 ~g~~~r~s~~lgl~L~~~GefslVlas~a~~~giIs~e~~~lll~~~vlS~i~~Pll~~~~~~i~  496 (521)
                      +|+++++++.+|+.|+|+|||++++++.|.+.|+++++.|++++.++++|++++|++.++++++.
T Consensus       319 ~g~~~~~a~~~gl~L~~~Gef~~vl~~~a~~~~~i~~~~~~~lv~~v~lS~~~tP~l~~~~~~~~  383 (621)
T PRK03562        319 LGVPRKQRRWFAVLLGQGGEFAFVVFGAAQMANVLEPEWAKLLTLAVALSMAATPLLLVLLDRLE  383 (621)
T ss_pred             hCCCHhHHHHHHHHHhccccHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence            99999999999999999999999999999999999999999999999999999999999876654

>PRK10669 putative cation:proton antiport protein; Provisional Back     alignment and domain information
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional Back     alignment and domain information
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism] Back     alignment and domain information
>PLN03159 cation/H(+) antiporter 15; Provisional Back     alignment and domain information
>PRK05326 potassium/proton antiporter; Reviewed Back     alignment and domain information
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ] Back     alignment and domain information
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family Back     alignment and domain information
>TIGR00844 c_cpa1 na(+)/h(+) antiporter Back     alignment and domain information
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form Back     alignment and domain information
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3 Back     alignment and domain information
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional Back     alignment and domain information
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00773 NhaA Na+/H+ antiporter NhaA Back     alignment and domain information
>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional Back     alignment and domain information
>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed Back     alignment and domain information
>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional Back     alignment and domain information
>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed Back     alignment and domain information
>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional Back     alignment and domain information
>PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH Back     alignment and domain information
>COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family Back     alignment and domain information
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional Back     alignment and domain information
>PRK12460 2-keto-3-deoxygluconate permease; Provisional Back     alignment and domain information
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional Back     alignment and domain information
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK10669 putative cation:proton antiport protein; Provisional Back     alignment and domain information
>PRK05326 potassium/proton antiporter; Reviewed Back     alignment and domain information
>PLN03159 cation/H(+) antiporter 15; Provisional Back     alignment and domain information
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism] Back     alignment and domain information
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species Back     alignment and domain information
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form Back     alignment and domain information
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins Back     alignment and domain information
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter Back     alignment and domain information
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi Back     alignment and domain information
>COG2855 Predicted membrane protein [Function unknown] Back     alignment and domain information
>TIGR00698 conserved hypothetical integral membrane protein Back     alignment and domain information
>TIGR00210 gltS sodium--glutamate symport carrier (gltS) Back     alignment and domain information
>TIGR00844 c_cpa1 na(+)/h(+) antiporter Back     alignment and domain information
>PRK05274 2-keto-3-deoxygluconate permease; Provisional Back     alignment and domain information
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family Back     alignment and domain information
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments Back     alignment and domain information
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ] Back     alignment and domain information
>TIGR00783 ccs citrate carrier protein, CCS family Back     alignment and domain information
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication Back     alignment and domain information
>COG0679 Predicted permeases [General function prediction only] Back     alignment and domain information
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase Back     alignment and domain information
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR00210 gltS sodium--glutamate symport carrier (gltS) Back     alignment and domain information
>PRK09903 putative transporter YfdV; Provisional Back     alignment and domain information
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism] Back     alignment and domain information
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate Back     alignment and domain information
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query521
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 42.5 bits (99), Expect = 3e-04
 Identities = 63/410 (15%), Positives = 112/410 (27%), Gaps = 129/410 (31%)

Query: 150 FVMSNKKSKY----PVLQ------VDLRLISDLV-VVIVSAAIGGIIFSCLGQPVIVGYL 198
           F     + +Y     V +       D + + D+   ++    I  II S     V     
Sbjct: 9   FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMS--KDAVSGTLR 66

Query: 199 LAGSIIGPGGLKFISELVQLCGAKLSEGVFVGSFLSMSSTAVVVKFLVEQNS-------- 250
           L  +++         E+VQ          FV   L ++   ++     EQ          
Sbjct: 67  LFWTLLSKQ-----EEMVQ---------KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY 112

Query: 251 ---NNALHG--------QVTIGTLI--LQDCAVGLLFALLPVLGGNSGL-LQGMVSMGKL 296
               + L+          V+       L+      L  L P       + + G++  GK 
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA----LLELRP----AKNVLIDGVLGSGKT 164

Query: 297 LLVLSIYLTVTSILSWSFVPRF------LKLMIQLSSQTNELYQLAAVAFCLLSAWCSDK 350
            + L +       LS+    +       L  +   +S    L  L  + + +   W S  
Sbjct: 165 WVALDV------CLSYKVQCKMDFKIFWLN-LKNCNSPETVLEMLQKLLYQIDPNWTS-- 215

Query: 351 LGLSLELGSFMAGVMISTTDFAKHTLDQVEP-IRNLFAALFLSSIGMLIHVHFLWNHVDI 409
                      + +        K  +  ++  +R L                    + + 
Sbjct: 216 ------RSDHSSNI--------KLRIHSIQAELRRLLK---------------SKPYENC 246

Query: 410 LLASVIL--VIIVKTAVGTIVTKLFGYSMRTSFLV-----GV--SLAQIGEFAFVLLSRA 460
           LL   +L  V   K          F  S +   L+      V   L+        L   +
Sbjct: 247 LL---VLLNVQNAKAW------NAFNLSCKI--LLTTRFKQVTDFLSAATTTHISLDHHS 295

Query: 461 SNLHLVEGKMYLLL-LGTTALSL-----VTTPLLFKLIPNVMNLGILLHW 504
             L   E K  LL  L      L      T P    +I   +  G+   W
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL-ATW 344

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query521
1zcd_A388 Na(+)/H(+) antiporter 1; membrane protein; 3.45A { 99.67
3zux_A332 Transporter, ASBTNM; transport protein, membrane p 92.57
3zux_A 332 Transporter, ASBTNM; transport protein, membrane p 81.9
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A Back     alignment and structure
Probab=99.67  E-value=2.4e-16  Score=164.86  Aligned_cols=292  Identities=17%  Similarity=0.102  Sum_probs=196.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHH--------hhcCChHHHHHHHHHHhhCcCCccchHHHHHHhcCchHHHHHHHHHhhcccH
Q 009951          167 RLISDLVVVIVSAAIGGIIF--------SCLGQPVIVGYLLAGSIIGPGGLKFISELVQLCGAKLSEGVFVGSFLSMSST  238 (521)
Q Consensus       167 ~li~~l~lil~~a~i~g~l~--------~rlglP~ivGyIlaGilLGPsgLglI~~~~ql~G~~~~~al~iG~~ls~TSt  238 (521)
                      +.+.|-.+.++.-...=++=        ++.+.-........|=++-|..+..      .++.+..++.....+...|+.
T Consensus        61 ~windglm~lFff~vGLEik~e~l~G~L~~~~~a~~p~~aAlgGmivP~~iy~------~~~~~~~~~~~gw~ip~ATdI  134 (388)
T 1zcd_A           61 LWINDALMAVFFLLVGLEVKRELMQGSLASLRQAAFPVIAAIGGMIVPALLYL------AFNYADPITREGWAIPAATDI  134 (388)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHHHG------GGCCSSTTHHHHTSSSSCCCH
T ss_pred             HHHhhHhHHHHHHHHHHHhhHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHHH------HHhcCChhhhhhhHHHHHHHH
Confidence            46777666665533333331        2233311223333444455654432      245555566777788899999


Q ss_pred             HHHHHHHHhcccCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 009951          239 AVVVKFLVEQNSNN-ALHGQVTIGTLILQDCAVGLLFALLPVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSILSWSFVPR  317 (521)
Q Consensus       239 avv~~iL~e~~~l~-s~~g~iiL~~avl~Dv~~~il~all~~l~~~~~~~~~~~sl~~~l~~l~~fllv~~vv~~~~~~~  317 (521)
                      +..+.++...+... +..++.+++.+++||+.+++++++..   +.+ .  ++..+.   . .++++++.         +
T Consensus       135 Afal~vL~~lg~~~p~~l~~flLalAvvDDl~aiivIAvfy---t~~-~--~~~~l~---~-~~~~~~~~---------~  195 (388)
T 1zcd_A          135 AFALGVLALLGSRVPLALKIFLMALAIIDDLGAIIIIALFY---TND-L--SMASLG---V-AAVAIAVL---------A  195 (388)
T ss_dssp             HHHHHHHHSSCSSSCSSSHHHHHHHHHHHHHHHHHHHHHHS---CCC-C--CHHHHH---H-HHHHHHHH---------H
T ss_pred             HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHH---cCC-c--cHHHHH---H-HHHHHHHH---------H
Confidence            99999999976544 44568999999999999999988763   121 1  222221   1 11111111         1


Q ss_pred             HHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHhcCC-----CchhhHHHhhhcHH-HHHHHHH-
Q 009951          318 FLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDKLGLSLELGSFMAGVMISTT-----DFAKHTLDQVEPIR-NLFAALF-  390 (521)
Q Consensus       318 llr~l~~~~~~~~El~ll~~lal~~~~~~iae~lGls~~LGAFlAGl~ls~~-----~~~~~l~~~le~i~-~~f~piF-  390 (521)
                      +.++.     ..++......+  ++...+.+++.|+|+.+|+|++|++++..     ...++++++++|+. .++.|+| 
T Consensus       196 ~l~r~-----~v~~~~~y~~l--gl~~w~~~~~sGvHatigg~l~Gl~ip~~~~~~~~~~~~le~~l~p~v~~~ilPlFa  268 (388)
T 1zcd_A          196 VLNLC-----GARRTGVYILV--GVVLWTAVLKSGVHATLAGVIVGFFIPLKEKHGRSPAKRLEHVLHPWVAYLILPLFA  268 (388)
T ss_dssp             HHHHT-----TCCCTHHHHHH--HHHHHHHTTTSHHHHHHHHHHHHHHSCCCGGGSSCHHHHHHHHHHHHHHHTHHHHHH
T ss_pred             HHHHh-----cchhHHHHHHH--HHHHHHHHHHhCccHHHHHHHHHHhccCCCccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            11211     12222222222  23334556999999999999999999985     34578999999997 5889999 


Q ss_pred             HHHhcchhhHH---hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCChHHHHHHHHHHhhHHHHHHHHH
Q 009951          391 LSSIGMLIHVH---FLWNHVDILLASVILVIIVKTAVGTIVTKLF----------GYSMRTSFLVGVSLAQIGEFAFVLL  457 (521)
Q Consensus       391 F~~iGl~ld~~---~l~~~~~~il~lvll~vl~K~l~~~l~~~~~----------g~~~r~s~~lgl~L~~~GefslVla  457 (521)
                      |++.|.++|..   .+.+ +. .+.+++..+++|+++++..++..          |.+|++..-+|+.++.+++.+++++
T Consensus       269 FanaGv~l~~~~~~~l~~-~~-~lgi~~glvvGK~~Gi~~~~~l~~rl~~~~lp~g~~~~~~~~vg~L~gigftmsL~Ia  346 (388)
T 1zcd_A          269 FANAGVSLQGVTLDGLTS-IL-PLGIIAGLLIGKPLGISLFCWLALRLKLAHLPEGTTYQQIMVVGILCGIGFTMSIFIA  346 (388)
T ss_dssp             HHHCCCCCSSSCCCTHHH-HS-STTTTHHHHHTTGGGSTTHHHHTSSCTTTCCCCSCCGGGGTTHHHHTTCCHHHHHHHH
T ss_pred             HHhcCeeecccchhhccC-hH-HHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCCCCHHHHHHHHHHhccchHHHHHHH
Confidence            99999999974   2322 11 23444556899999966666655          8999999999998888999999999


Q ss_pred             HHHhhCCC--ChHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009951          458 SRASNLHL--VEGKMYLLLLGTTALSLVTTPLLFKLI  492 (521)
Q Consensus       458 s~a~~~gi--Is~e~~~lll~~~vlS~i~~Pll~~~~  492 (521)
                      +.|++.+.  +.++.+..++..+++|.+++|++.|+.
T Consensus       347 ~laf~~~~~~~~~~ak~~il~~s~~s~i~g~~~L~~~  383 (388)
T 1zcd_A          347 SLAFGSVDPELINWAKLGILVGSISSAVIGYSWLRVR  383 (388)
T ss_dssp             HHHSTTSSCSSHHHHHHHHHHHHHTTTSTTTGGGTTT
T ss_pred             HHhccCCchhhHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99998876  356778888899999999999877654
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A* Back     alignment and structure
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00