Citrus Sinensis ID: 009970

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-

MMVDGVEDEEKWLAAGIAGLQQNAFYMHRALDSNNLRDALKYSAQMLSELRTSKLSPQKYYQLYMRAFDELRKLEMFFKEETRRGCSIIDLYELVQHAGNILPRLYLLCTVGSVYIKSKEAPAKDVLKDLVEMCRGIQHPVRGLFLRSYLSQISRDKLPDIGSEYEGDADTVNDAMEFVLQNFTEMNKLWVRMQHQGPAREKDKREKERSELRDLVGKNLHVLSQIEGVDLDTYKETVLPRVLEQVVNCKDEIAQCYLMDCIIQVFPDEYHLQTLEILLGAFPQLQPSVDIKTVLSRLMERLSNYAASSTEVLPEFLQVEAFSKLNNAIGKVIEAQADMPILGAVTLYSSLLTFTLHVHPDRLDYADQVLGACVKKLSGEGKLEDNRATKQIVALLSAPLDKYNDIVTVLKLSNYPSVMEYVDSETNKVMAMVIIQSIMKNNTQISTADKVGALFELIKGLIRDLDGAAHDQVDEDDFKEEQNSVARLIQMLQNDDTEEMFKVSERVILSLYDYLISLSVE

cccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHcccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHcccc

cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccccHEEEEEEEcEEEEEcccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccHHHcccHHHHHcccccHHHHHHcccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccc

MMVDGVEDEEKWLAAGIAGLQQNAFYMHRALDSNNLRDALKYSAQMLSELrtsklspqKYYQLYMRAFDELRKLEMFFKEETRRGCSIIDLYELVQHAGNILPRLYLLCTVGsvyikskeapakDVLKDLVEMCRgiqhpvrgLFLRSYLSQisrdklpdigseyegdadtvNDAMEFVLQNFTEMNKLWVRMqhqgparekdKREKERSELRDLVGKNLHVLsqiegvdldtyketvlPRVLEQVVNCKDEIAQCYLMDciiqvfpdeyhLQTLEILLGafpqlqpsvdIKTVLSRLMERLSNYAASSTEVLPEFLQVEAFSKLNNAIGKVieaqadmpiLGAVTLYSSLLTFTlhvhpdrldyADQVLGACVKKLsgegklednRATKQIVALLSAPLDKYNDIVTVLKLSNYPSVMEYVDSETNKVMAMVIIQSIMKNNTQISTADKVGALFELIKGLIRDldgaahdqvdeddfkEEQNSVARLIQMLQNDDTEEMFKVSERVILSLYDYLISLSVE

MMVDGVEDEEKWLAAGIAGLQQNAFYMHRALDSNNLRDALKYSAQMLSElrtsklspqkyYQLYMRAFDELRKLEMFFKEETRRGCSIIDLYELVQHAGNILPRLYLLCTVGSVYIKSKEAPAKDVLKDLVEMCRGIQHPVRGLFLRSYLSQISRDKLPDIGSEYEGDADTVNDAMEFVLQNFTEMNKLWVRMQhqgparekdkrekERSElrdlvgknlhvlsqiegvdldtyKETVLPRVLEQVVNCKDEIAQCYLMDCIIQVFPDEYHLQTLEILLGafpqlqpsVDIKTVLSRLMERLSNYAASSTEVLPEFLQVEAFSKLNNAIGKVIEAQADMPILGAVTLYSSLLTFTLHVHPDRLDYADQVLGACVKKLsgegklednrATKQIVALlsapldkynDIVTVLKLSNYPSVMEYVDSETNKVMAMVIIQSIMKNNTQISTADKVGALFELIKGLIRDLDGAAHDQVDEDDFKEEQNSVARLIQMLQNDDTEEMFKVSERVILSLYDYLISLSVE

MMVDGVEDEEKWLAAGIAGLQQNAFYMHRALDSNNLRDALKYSAQMLSELRTSKLSPQKYYQLYMRAFDELRKLEMFFKEETRRGCSIIDLYELVQHAGNILPRLYLLCTVGSVYIKSKEAPAKDVLKDLVEMCRGIQHPVRGLFLRSYLSQISRDKLPDIGSEYEGDADTVNDAMEFVLQNFTEMNKLWVRMQHQGPArekdkrekerselrdlVGKNLHVLSQIEGVDLDTYKETVLPRVLEQVVNCKDEIAQCYLMDCIIQVFPDEYHLQTLEILLGAFPQLQPSVDIKTVLSRLMERLSNYAASSTEVLPEFLQVEAFSKLNNAIGKVIEAQADMPILGAVTLYSSLLTFTLHVHPDRLDYADQVLGACVKKLSGEGKLEDNRATKQIVALLSAPLDKYNDIVTVLKLSNYPSVMEYVDSETNKVMAMVIIQSIMKNNTQISTADKVGALFELIKGLIRDLDGAAHDQVDEDDFKEEQNSVARLIQMLQNDDTEEMFKVSERVilslydylislsVE

**********KWLAAGIAGLQQNAFYMHRALDSNNLRDALKYSAQMLSELRTSKLSPQKYYQLYMRAFDELRKLEMFFKEETRRGCSIIDLYELVQHAGNILPRLYLLCTVGSVYIKSKEAPAKDVLKDLVEMCRGIQHPVRGLFLRSYLSQISRDKLPDIGSEYEGDADTVNDAMEFVLQNFTEMNKLWVR**********************LVGKNLHVLSQIEGVDLDTYKETVLPRVLEQVVNCKDEIAQCYLMDCIIQVFPDEYHLQTLEILLGAFPQLQPSVDIKTVLSRLMERLSNYAASSTEVLPEFLQVEAFSKLNNAIGKVIEAQADMPILGAVTLYSSLLTFTLHVHPDRLDYADQVLGACVKKLSGEGKLEDNRATKQIVALLSAPLDKYNDIVTVLKLSNYPSVMEYVDSETNKVMAMVIIQSIMKNNTQISTADKVGALFELIKGLIRDLDGAA*****************RLIQMLQ***TEEMFKVSERVILSLYDYLISL***

****G*E**EKWLAAGIAGLQQNAFYMHRALDSNNLRDALKYSAQMLSELRTSKLSPQKYYQLYMRAFDELRKLEMFFKEETRRGCSIIDLYELVQHAGNILPRLYLLCTVGSVYIKSKEAPAKDVLKDLVEMCRGIQHPVRGLFLRSYLSQISRDKLPDIGSE*****DTVNDAMEFVLQNFTEMNKLWVR*******************LRDLVGKNLHVLSQIEGVDLDTYKETVLPRVLEQVVNCKDEIAQCYLMDCIIQVFPDEYHLQTLEILLGAFPQLQPSVDIKTVLSRLMERLSNYA*************EAFSKLNNAI**************AVTLYSSLLTFTLHVHPDRLDYADQVLGACVKKL************KQIVALLSAPLDKYNDIVTVLKLSNYPSVMEYVDSETNKVMAMVIIQSIMKNNTQISTADKVGALFELIKGLI***************FKEEQNSVARLIQMLQNDDTEEMFKVSERVILSLYDYLISLSV*

********EEKWLAAGIAGLQQNAFYMHRALDSNNLRDALKYSAQMLSELRTSKLSPQKYYQLYMRAFDELRKLEMFFKEETRRGCSIIDLYELVQHAGNILPRLYLLCTVGSVYIKSKEAPAKDVLKDLVEMCRGIQHPVRGLFLRSYLSQISRDKLPDIGSEYEGDADTVNDAMEFVLQNFTEMNKLWVRMQ*****************LRDLVGKNLHVLSQIEGVDLDTYKETVLPRVLEQVVNCKDEIAQCYLMDCIIQVFPDEYHLQTLEILLGAFPQLQPSVDIKTVLSRLMERLSNYAASSTEVLPEFLQVEAFSKLNNAIGKVIEAQADMPILGAVTLYSSLLTFTLHVHPDRLDYADQVLGACVKKLSGEGKLEDNRATKQIVALLSAPLDKYNDIVTVLKLSNYPSVMEYVDSETNKVMAMVIIQSIMKNNTQISTADKVGALFELIKGLIRDLDGAAHDQVDEDDFKEEQNSVARLIQMLQNDDTEEMFKVSERVILSLYDYLISLSVE

****GVEDEEKWLAAGIAGLQQNAFYMHRALDSNNLRDALKYSAQMLSELRTSKLSPQKYYQLYMRAFDELRKLEMFFKEETRRGCSIIDLYELVQHAGNILPRLYLLCTVGSVYIKSKEAPAKDVLKDLVEMCRGIQHPVRGLFLRSYLSQISRDKLPDIGSEYEGDADTVNDAMEFVLQNFTEMNKLWVRMQHQGPAREKDKREKERSELRDLVGKNLHVLSQIEGVDLDTYKETVLPRVLEQVVNCKDEIAQCYLMDCIIQVFPDEYHLQTLEILLGAFPQLQPSVDIKTVLSRLMERLSNYAASSTEVLPEFLQVEAFSKLNNAIGKVIEAQADMPILGAVTLYSSLLTFTLHVHPDRLDYADQVLGACVKKLSGEGKLEDNRATKQIVALLSAPLDKYNDIVTVLKLSNYPSVMEYVDSETNKVMAMVIIQSIMKNNTQISTADKVGALFELIKGLIRDLDGAAHDQVDEDDFKEEQNSVARLIQMLQNDDTEEMFKVSERVILSLYDYLISLSVE

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		521	2.2.26 [Sep-21-2011]
Q7X659		787	Vacuolar protein sorting-	yes	no	0.965	0.639	0.823	0.0
F4I0P8		790	Vacuolar protein sorting-	no	no	0.957	0.631	0.771	0.0
A8R7K9		790	Vacuolar protein sorting-	no	no	0.953	0.629	0.754	0.0
Q54C24		781	Vacuolar sorting protein	yes	no	0.944	0.629	0.48	1e-130
Q9EQH3		796	Vacuolar protein sorting-	yes	no	0.940	0.615	0.467	1e-119
Q2HJG5		796	Vacuolar protein sorting-	yes	no	0.940	0.615	0.465	1e-118
Q96QK1		796	Vacuolar protein sorting-	yes	no	0.940	0.615	0.465	1e-118
O74552		836	Vacuolar protein sorting-	yes	no	0.890	0.555	0.353	2e-79
P34110		944	Vacuolar protein sorting-	yes	no	0.687	0.379	0.399	5e-70

>sp\|Q7X659\|VP35A_ARATH Vacuolar protein sorting-associated protein 35A OS=Arabidopsis thaliana GN=VPS35A PE=2 SV=1	Back alignment and function desciption

 Score =  845 bits (2183), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/503 (82%), Positives = 462/503 (91%)

Query: 1   MMVDGVEDEEKWLAAGIAGLQQNAFYMHRALDSNNLRDALKYSAQMLSELRTSKLSPQKY 60
           M+ DG EDEEKWLAAG A  +QNAFYM RA+DSNNL+DALKYSAQMLSELRTSKLSP KY
Sbjct: 1   MIADGSEDEEKWLAAGAAAFKQNAFYMQRAIDSNNLKDALKYSAQMLSELRTSKLSPHKY 60

Query: 61  YQLYMRAFDELRKLEMFFKEETRRGCSIIDLYELVQHAGNILPRLYLLCTVGSVYIKSKE 120
           Y LYMRAFDELRKLE+FF EETRRGCS+I+LYELVQHAGNILPRLYLLCT GSVYIK+KE
Sbjct: 61  YDLYMRAFDELRKLEIFFMEETRRGCSVIELYELVQHAGNILPRLYLLCTAGSVYIKTKE 120

Query: 121 APAKDVLKDLVEMCRGIQHPVRGLFLRSYLSQISRDKLPDIGSEYEGDADTVNDAMEFVL 180
           APAK++LKDLVEMCRGIQHP+RGLFLRSYL+QISRDKLPDIGSEYEGDADTV DA+EFVL
Sbjct: 121 APAKEILKDLVEMCRGIQHPLRGLFLRSYLAQISRDKLPDIGSEYEGDADTVIDAVEFVL 180

Query: 181 QNFTEMNKLWVRMQHQGPAREKDKREKERSELRDLVGKNLHVLSQIEGVDLDTYKETVLP 240
            NFTEMNKLWVRMQHQGPAREK++REKER ELRDLVGKNLHVLSQ+EGVDLD Y++TVLP
Sbjct: 181 LNFTEMNKLWVRMQHQGPAREKERREKERGELRDLVGKNLHVLSQLEGVDLDMYRDTVLP 240

Query: 241 RVLEQVVNCKDEIAQCYLMDCIIQVFPDEYHLQTLEILLGAFPQLQPSVDIKTVLSRLME 300
           RVLEQ+VNC+DEIAQ YL+DCIIQVFPDEYHLQTL++LLGA PQLQ SVDI TVLSRLME
Sbjct: 241 RVLEQIVNCRDEIAQYYLIDCIIQVFPDEYHLQTLDVLLGACPQLQASVDIMTVLSRLME 300

Query: 301 RLSNYAASSTEVLPEFLQVEAFSKLNNAIGKVIEAQADMPILGAVTLYSSLLTFTLHVHP 360
           RLSNYAA + EVLP FLQVEAFSKLNNAIGKVIEAQ DMPIL AVTLYSSLL FTLHVHP
Sbjct: 301 RLSNYAALNAEVLPYFLQVEAFSKLNNAIGKVIEAQEDMPILSAVTLYSSLLKFTLHVHP 360

Query: 361 DRLDYADQVLGACVKKLSGEGKLEDNRATKQIVALLSAPLDKYNDIVTVLKLSNYPSVME 420
           DRLDYADQVLG+CVK+LSG+GK++D RATK++V+LLSAPL+KYND+VT LKL+NYP V+E
Sbjct: 361 DRLDYADQVLGSCVKQLSGKGKIDDTRATKELVSLLSAPLEKYNDVVTALKLTNYPLVVE 420

Query: 421 YVDSETNKVMAMVIIQSIMKNNTQISTADKVGALFELIKGLIRDLDGAAHDQVDEDDFKE 480
           Y+D+ET ++MA VI++SIMKNNT I+TA+KV ALFELIKG+I DLD     +VDEDDF+E
Sbjct: 421 YLDTETKRIMATVIVRSIMKNNTLITTAEKVEALFELIKGIINDLDEPQGLEVDEDDFQE 480

Query: 481 EQNSVARLIQMLQNDDTEEMFKV 503
           EQNSVA LI ML NDD EEMFK+
Sbjct: 481 EQNSVALLIHMLYNDDPEEMFKI 503

Plays a role in vesicular protein sorting. Component of the membrane-associated retromer complex which is essential in endosome-to-Golgi retrograde transport. Also involved in the efficient sorting of seed storage proteins (By similarity). The VPS29-VPS26-VPS35 subcomplex may be involved in recycling of specific cargos from endosome to the plasma membrane.
Arabidopsis thaliana (taxid: 3702)

>sp\|F4I0P8\|VP35B_ARATH Vacuolar protein sorting-associated protein 35B OS=Arabidopsis thaliana GN=VPS35B PE=1 SV=1	Back alignment and function description

>sp\|A8R7K9\|VP35C_ARATH Vacuolar protein sorting-associated protein 35C OS=Arabidopsis thaliana GN=VPS35C PE=2 SV=1	Back alignment and function description

>sp\|Q54C24\|VPS35_DICDI Vacuolar sorting protein 35 OS=Dictyostelium discoideum GN=vps35 PE=3 SV=1	Back alignment and function description

>sp\|Q9EQH3\|VPS35_MOUSE Vacuolar protein sorting-associated protein 35 OS=Mus musculus GN=Vps35 PE=1 SV=1	Back alignment and function description

>sp\|Q2HJG5\|VPS35_BOVIN Vacuolar protein sorting-associated protein 35 OS=Bos taurus GN=VPS35 PE=2 SV=1	Back alignment and function description

>sp\|Q96QK1\|VPS35_HUMAN Vacuolar protein sorting-associated protein 35 OS=Homo sapiens GN=VPS35 PE=1 SV=2	Back alignment and function description

>sp\|O74552\|VPS35_SCHPO Vacuolar protein sorting-associated protein 35 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vps35 PE=1 SV=2	Back alignment and function description

>sp\|P34110\|VPS35_YEAST Vacuolar protein sorting-associated protein 35 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VPS35 PE=1 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		521
255580677		792	vacuolar sorting protein, putative [Rici	0.963	0.633	0.910	0.0
449456831		790	PREDICTED: vacuolar protein sorting-asso	0.973	0.641	0.867	0.0
356538317		794	PREDICTED: vacuolar protein sorting-asso	0.973	0.638	0.881	0.0
356496620		794	PREDICTED: vacuolar protein sorting-asso	0.973	0.638	0.879	0.0
226532311		803	vacuolar protein sorting 35 [Zea mays] g	0.957	0.621	0.842	0.0
125546075		793	hypothetical protein OsI_13933 [Oryza sa	0.957	0.629	0.842	0.0
414873426		624	TPA: hypothetical protein ZEAMMB73_61335	0.957	0.799	0.842	0.0
242037753		803	hypothetical protein SORBIDRAFT_01g00484	0.957	0.621	0.84	0.0
359476862		789	PREDICTED: vacuolar protein sorting-asso	0.963	0.636	0.884	0.0
115455985		793	Os03g0801600 [Oryza sativa Japonica Grou	0.957	0.629	0.84	0.0

>gi\|255580677\|ref\|XP_002531161.1\| vacuolar sorting protein, putative [Ricinus communis] gi\|223529274\|gb\|EEF31246.1\| vacuolar sorting protein, putative [Ricinus communis]	Back alignment and taxonomy information

 Score =  926 bits (2394), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 458/503 (91%), Positives = 482/503 (95%), Gaps = 1/503 (0%)

Query: 1   MMVDGVEDEEKWLAAGIAGLQQNAFYMHRALDSNNLRDALKYSAQMLSELRTSKLSPQKY 60
           M+ DGVE+EEKWLAAGIAGLQQNAF MHRALDSNNLRDALKYSAQMLSELRTSKLSP KY
Sbjct: 1   MIADGVENEEKWLAAGIAGLQQNAFNMHRALDSNNLRDALKYSAQMLSELRTSKLSPHKY 60

Query: 61  YQLYMRAFDELRKLEMFFKEETRRGCSIIDLYELVQHAGNILPRLYLLCTVGSVYIKSKE 120
           Y+LYMRAFDELRKLE+FF+EETRRGCSIIDLYELVQHAGNILPRLYLLCTVGSVYIKSKE
Sbjct: 61  YELYMRAFDELRKLEIFFREETRRGCSIIDLYELVQHAGNILPRLYLLCTVGSVYIKSKE 120

Query: 121 APAKDVLKDLVEMCRGIQHPVRGLFLRSYLSQISRDKLPDIGSEYEGDADTVNDAMEFVL 180
           APAKDVLKDLVEMCRGIQHPVRGLFLRSYLSQ+SRDKLPDIGSEYEGDADTV DA+EFVL
Sbjct: 121 APAKDVLKDLVEMCRGIQHPVRGLFLRSYLSQVSRDKLPDIGSEYEGDADTVMDAVEFVL 180

Query: 181 QNFTEMNKLWVRMQHQGPAREKDKREKERSELRDLVGKNLHVLSQIEGVDLDTYKETVLP 240
           QNFTEMNKLWVRMQHQGPAREK+KREKERSELRDLVGKNLHVLSQIEGVDLD YKETVLP
Sbjct: 181 QNFTEMNKLWVRMQHQGPAREKEKREKERSELRDLVGKNLHVLSQIEGVDLDMYKETVLP 240

Query: 241 RVLEQVVNCKDEIAQCYLMDCIIQVFPDEYHLQTLEILLGAFPQLQPSVDIKTVLSRLME 300
           RVLEQVVNCKDEIAQ YLMDCIIQVFPDEYHLQTLE+LLGA PQLQPSVDIK VLSRLME
Sbjct: 241 RVLEQVVNCKDEIAQFYLMDCIIQVFPDEYHLQTLEVLLGACPQLQPSVDIKMVLSRLME 300

Query: 301 RLSNYAASSTEVLPEFLQVEAFSKLNNAIGKVIEAQADMPILGAVTLYSSLLTFTLHVHP 360
           RLSNYAASSTEVLPEFLQVEAFSKLN+AIGKVIEAQ DMP+ GAVTLYSSLLTFTLHVHP
Sbjct: 301 RLSNYAASSTEVLPEFLQVEAFSKLNHAIGKVIEAQVDMPMFGAVTLYSSLLTFTLHVHP 360

Query: 361 DRLDYADQVLGACVKKLSGEGKLEDNRATKQIVALLSAPLDKYNDIVTVLKLSNYPSVME 420
           DRLDYADQVLGACVKKLS +GKLED++ATKQIVALLSAPL+KYND+VT LKLSNYP VME
Sbjct: 361 DRLDYADQVLGACVKKLSNKGKLEDSKATKQIVALLSAPLEKYNDVVTALKLSNYPRVME 420

Query: 421 YVDSETNKVMAMVIIQSIMKNNTQISTADKVGALFELIKGLIRDLDGAAHDQVDEDDFKE 480
           Y+D+ETNKVMA VIIQSIMKNNT+IS ADKV ALFELI GLI+DLDG  H++VDEDDFKE
Sbjct: 421 YLDNETNKVMATVIIQSIMKNNTRISIADKVEALFELITGLIKDLDG-THEEVDEDDFKE 479

Query: 481 EQNSVARLIQMLQNDDTEEMFKV 503
           EQNSVARLIQML NDD EEM+K+
Sbjct: 480 EQNSVARLIQMLHNDDPEEMYKI 502

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|449456831\|ref\|XP_004146152.1\| PREDICTED: vacuolar protein sorting-associated protein 35A-like [Cucumis sativus] gi\|449524673\|ref\|XP_004169346.1\| PREDICTED: vacuolar protein sorting-associated protein 35A-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356538317\|ref\|XP_003537650.1\| PREDICTED: vacuolar protein sorting-associated protein 35-like [Glycine max]	Back alignment and taxonomy information

>gi\|356496620\|ref\|XP_003517164.1\| PREDICTED: vacuolar protein sorting-associated protein 35-like [Glycine max]	Back alignment and taxonomy information

>gi\|226532311\|ref\|NP_001151633.1\| vacuolar protein sorting 35 [Zea mays] gi\|195648240\|gb\|ACG43588.1\| vacuolar protein sorting 35 [Zea mays] gi\|414873425\|tpg\|DAA51982.1\| TPA: vacuolar protein sorting 35 [Zea mays]	Back alignment and taxonomy information

>gi\|125546075\|gb\|EAY92214.1\| hypothetical protein OsI_13933 [Oryza sativa Indica Group]	Back alignment and taxonomy information

>gi\|414873426\|tpg\|DAA51983.1\| TPA: hypothetical protein ZEAMMB73_613357 [Zea mays]	Back alignment and taxonomy information

>gi\|242037753\|ref\|XP_002466271.1\| hypothetical protein SORBIDRAFT_01g004840 [Sorghum bicolor] gi\|241920125\|gb\|EER93269.1\| hypothetical protein SORBIDRAFT_01g004840 [Sorghum bicolor]	Back alignment and taxonomy information

>gi\|359476862\|ref\|XP_002262862.2\| PREDICTED: vacuolar protein sorting-associated protein 35-like [Vitis vinifera] gi\|297734969\|emb\|CBI17331.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi|115455985|ref|NP_001051593.1| Os03g0801600 [Oryza sativa Japonica Group] gi|29150373|gb|AAO72382.1| putative vacuolar protein sorting-associated protein [Oryza sativa Japonica Group] gi|108711598|gb|ABF99393.1| vacuolar protein sorting-associated protein 35 family protein, putative, expressed [Oryza sativa Japonica Group] gi|113550064|dbj|BAF13507.1| Os03g0801600 [Oryza sativa Japonica Group] gi|125588278|gb|EAZ28942.1| hypothetical protein OsJ_12986 [Oryza sativa Japonica Group] gi|215704706|dbj|BAG94334.1| unnamed protein product [Oryza sativa Japonica Group]

Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		521
TAIR\|locus:2827896		787	VPS35A "AT2G17790" [Arabidopsi	0.965	0.639	0.797	1.6e-214
TAIR\|locus:2204390		790	VPS35B "AT1G75850" [Arabidopsi	0.957	0.631	0.751	1.2e-200
TAIR\|locus:2080888		790	VPS35C "AT3G51310" [Arabidopsi	0.953	0.629	0.726	1.7e-198
DICTYBASE\|DDB_G0293218		781	vps35 "vacuolar sorting protei	0.944	0.629	0.464	6e-119
ZFIN\|ZDB-GENE-030131-2042		854	vps35 "vacuolar protein sortin	0.950	0.579	0.446	7.6e-112
UNIPROTKB\|F1NVF0		796	VPS35 "Uncharacterized protein	0.950	0.621	0.442	1.6e-111
MGI\|MGI:1890467		796	Vps35 "vacuolar protein sortin	0.948	0.620	0.445	5.3e-111
UNIPROTKB\|Q2HJG5		796	VPS35 "Vacuolar protein sortin	0.948	0.620	0.443	1.4e-110
RGD\|1589784		796	Vps35 "vacuolar protein sortin	0.948	0.620	0.443	1.4e-110
UNIPROTKB\|E2QRX1		796	VPS35 "Uncharacterized protein	0.948	0.620	0.443	2.3e-110

TAIR\|locus:2827896 VPS35A "AT2G17790" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2073 (734.8 bits), Expect = 1.6e-214, P = 1.6e-214
 Identities = 401/503 (79%), Positives = 447/503 (88%)

Query:     1 MMVDGVEDEEKWLAAGIAGLQQNAFYMHRALDSNNLRDALKYSAQMLSELRTSKLSPQKY 60
             M+ DG EDEEKWLAAG A  +QNAFYM RA+DSNNL+DALKYSAQMLSELRTSKLSP KY
Sbjct:     1 MIADGSEDEEKWLAAGAAAFKQNAFYMQRAIDSNNLKDALKYSAQMLSELRTSKLSPHKY 60

Query:    61 YQLYMRAFDELRKLEMFFKEETRRGCSIIDLYELVQHAGNILPRLYLLCTVGSVYIKSKE 120
             Y LYMRAFDELRKLE+FF EETRRGCS+I+LYELVQHAGNILPRLYLLCT GSVYIK+KE
Sbjct:    61 YDLYMRAFDELRKLEIFFMEETRRGCSVIELYELVQHAGNILPRLYLLCTAGSVYIKTKE 120

Query:   121 APAKDVLKDLVEMCRGIQHPVRGLFLRSYLSQISRDKLPDIGSEYEGDADTVNDAMEFVL 180
             APAK++LKDLVEMCRGIQHP+RGLFLRSYL+QISRDKLPDIGSEYEGDADTV DA+EFVL
Sbjct:   121 APAKEILKDLVEMCRGIQHPLRGLFLRSYLAQISRDKLPDIGSEYEGDADTVIDAVEFVL 180

Query:   181 QNFTEMNKLWVRMQHQGPAXXXXXXXXXXXXXXXXVGKNLHVLSQIEGVDLDTYKETVLP 240
              NFTEMNKLWVRMQHQGPA                VGKNLHVLSQ+EGVDLD Y++TVLP
Sbjct:   181 LNFTEMNKLWVRMQHQGPAREKERREKERGELRDLVGKNLHVLSQLEGVDLDMYRDTVLP 240

Query:   241 RVLEQVVNCKDEIAQCYLMDCIIQVFPDEYHLQTLEILLGAFPQLQPSVDIKTVLSRLME 300
             RVLEQ+VNC+DEIAQ YL+DCIIQVFPDEYHLQTL++LLGA PQLQ SVDI TVLSRLME
Sbjct:   241 RVLEQIVNCRDEIAQYYLIDCIIQVFPDEYHLQTLDVLLGACPQLQASVDIMTVLSRLME 300

Query:   301 RLSNYAASSTEVLPEFLQVEAFSKLNNAIGKVIEAQADMPILGAVTLYSSLLTFTLHVHP 360
             RLSNYAA + EVLP FLQVEAFSKLNNAIGKVIEAQ DMPIL AVTLYSSLL FTLHVHP
Sbjct:   301 RLSNYAALNAEVLPYFLQVEAFSKLNNAIGKVIEAQEDMPILSAVTLYSSLLKFTLHVHP 360

Query:   361 DRLDYADQVLGACVKKLSGEGKLEDNRATKQIVALLSAPLDKYNDIVTVLKLSNYPSVME 420
             DRLDYADQVLG+CVK+LSG+GK++D RATK++V+LLSAPL+KYND+VT LKL+NYP V+E
Sbjct:   361 DRLDYADQVLGSCVKQLSGKGKIDDTRATKELVSLLSAPLEKYNDVVTALKLTNYPLVVE 420

Query:   421 YVDSETNKVMAMVIIQSIMKNNTQISTADKVGALFELIKGLIRDLDGAAHDQVDEDDFKE 480
             Y+D+ET ++MA VI++SIMKNNT I+TA+KV ALFELIKG+I DLD     +VDEDDF+E
Sbjct:   421 YLDTETKRIMATVIVRSIMKNNTLITTAEKVEALFELIKGIINDLDEPQGLEVDEDDFQE 480

Query:   481 EQNSVARLIQMLQNDDTEEMFKV 503
             EQNSVA LI ML NDD EEMFK+
Sbjct:   481 EQNSVALLIHMLYNDDPEEMFKI 503

GO:0003674 "molecular_function" evidence=ND

GO:0006886 "intracellular protein transport" evidence=IGI;ISS

GO:0042147 "retrograde transport, endosome to Golgi" evidence=ISS

TAIR\|locus:2204390 VPS35B "AT1G75850" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2080888 VPS35C "AT3G51310" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0293218 vps35 "vacuolar sorting protein 35" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-030131-2042 vps35 "vacuolar protein sorting 35 (yeast)" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NVF0 VPS35 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

MGI\|MGI:1890467 Vps35 "vacuolar protein sorting 35" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|Q2HJG5 VPS35 "Vacuolar protein sorting-associated protein 35" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

RGD\|1589784 Vps35 "vacuolar protein sorting 35 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|E2QRX1 VPS35 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q7X659	VP35A_ARATH	No assigned EC number	0.8230	0.9654	0.6391	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		521
pfam03635		741	pfam03635, Vps35, Vacuolar protein sorting-associa	0.0

>gnl\|CDD\|217651 pfam03635, Vps35, Vacuolar protein sorting-associated protein 35	Back alignment and domain information

 Score =  729 bits (1884), Expect = 0.0
 Identities = 276/500 (55%), Positives = 359/500 (71%), Gaps = 8/500 (1%)

Query: 11  KWLAAGIAGLQQNAFYMHRALDSNNLRDALKYSAQMLSELRTSKLSPQKYYQLYMRAFDE 70
           K L   IA ++Q +F M R LD   L DALK+++ MLSELRTS LSP++YY+LYM+ FDE
Sbjct: 1   KLLEEAIAVVKQQSFLMKRCLDQGKLMDALKHASNMLSELRTSSLSPKQYYELYMKVFDE 60

Query: 71  LRKLEMFFKEETRRGCSIIDLYELVQHAGNILPRLYLLCTVGSVYIKSKEAPAKDVLKDL 130
           L+ L  +  +E  +G  + DLYELVQ+AGNI+PRLYLL TVGSVYIKSK+APAK++LKD+
Sbjct: 61  LQYLSTYLVDEHPKGHHLADLYELVQYAGNIVPRLYLLITVGSVYIKSKDAPAKEILKDM 120

Query: 131 VEMCRGIQHPVRGLFLRSYLSQISRDKLPDIGSEYEGDADTVNDAMEFVLQNFTEMNKLW 190
           VEMCRG+QHP RGLFLR YLSQ ++DKLPD GS  EG   TV D++EF+L NF EMNKLW
Sbjct: 121 VEMCRGVQHPTRGLFLRYYLSQRTKDKLPDTGSYEEGGGGTVQDSIEFLLTNFIEMNKLW 180

Query: 191 VRMQHQGPAREKDKREKERSELRDLVGKNLHVLSQIEGVDLDTYKETVLPRVLEQVVNCK 250
           VR+QHQGP+RE++KREKER ELR LVG NL  LSQ+EGVDL+ YKET+LPR+LEQVVNC+
Sbjct: 181 VRLQHQGPSREREKREKERKELRILVGSNLVRLSQLEGVDLEMYKETILPRILEQVVNCR 240

Query: 251 DEIAQCYLMDCIIQVFPDEYHLQTLEILLGAFPQLQPSVDIKTVLSRLMERLSNYAASST 310
           D +AQ YL++ IIQVFPDE+HL TL+ LL A  QL P VD+K +L  LM+RL+ YA  S 
Sbjct: 241 DVLAQEYLLEVIIQVFPDEFHLATLDTLLSACLQLNPGVDVKKILITLMDRLAAYAERSN 300

Query: 311 EVLP------EFLQVEAFSKLNNAIGKVIEAQADMPILGAVTLYSSLLTFTLHVHPDRLD 364
           E +       E   V+ F    N + K+I+A+ D+P+   + L  SLL  TL  +PDRLD
Sbjct: 301 EGVAEVESTKEEEDVDLFEVFWNQLVKLIKARPDLPLQDIIALLVSLLNLTLKCYPDRLD 360

Query: 365 YADQVLGACVKKLSG--EGKLEDNRATKQIVALLSAPLDKYNDIVTVLKLSNYPSVMEYV 422
           Y DQVLG  V+K+S     KL  +   ++IV LL AP+  Y +I+T L+L NY  ++  +
Sbjct: 361 YVDQVLGFAVEKVSNYLGAKLNSSEIEQEIVRLLLAPISTYKNILTALELPNYQPLLSSL 420

Query: 423 DSETNKVMAMVIIQSIMKNNTQISTADKVGALFELIKGLIRDLDGAAHDQVDEDDFKEEQ 482
           D  T K +A+ II +I+KNNT I+T D V  LFELI  LI+D      D+++ ++F EEQ
Sbjct: 421 DYSTRKSVALAIIDNILKNNTLITTLDDVERLFELISPLIKDQPDQPSDELETEEFAEEQ 480

Query: 483 NSVARLIQMLQNDDTEEMFK 502
             VARLI ++++DD E+ FK
Sbjct: 481 EKVARLIHLIRSDDVEKQFK 500

Vacuolar protein sorting-associated protein (Vps) 35 is one of around 50 proteins involved in protein trafficking. In particular, Vps35 assembles into a retromer complex with at least four other proteins Vps5, Vps17, Vps26 and Vps29. Vps35 contains a central region of weaker sequence similarity, thought to indicate the presence of at least three domains. Length = 741

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		521
PF03635		762	Vps35: Vacuolar protein sorting-associated protein	100.0
KOG1107		760	consensus Membrane coat complex Retromer, subunit	100.0
KOG3682		930	consensus Predicted membrane protein (associated w	99.9
KOG1107		760	consensus Membrane coat complex Retromer, subunit	99.6

>PF03635 Vps35: Vacuolar protein sorting-associated protein 35 ; InterPro: IPR005378 The movement of lipid and protein components between intracellular organelles requires the regulated interactions of many molecules	Back alignment and domain information

Probab=100.00  E-value=7.3e-172  Score=1437.69  Aligned_cols=502  Identities=55%  Similarity=0.888  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHHHhHHHHHHHhccccHHHHHHHHHHHHHhhhcCCCCCchhhHHHHHHHhhhHHHHHHHHHHhhcCCCchh
Q 009970           11 KWLAAGIAGLQQNAFYMHRALDSNNLRDALKYSAQMLSELRTSKLSPQKYYQLYMRAFDELRKLEMFFKEETRRGCSIID   90 (521)
Q Consensus        11 k~L~ea~~~Vk~qs~~Mkr~ld~~~l~~ALkhas~mL~ELRts~LsPk~YYeLYm~V~d~L~~L~~yl~d~~~~g~~l~d   90 (521)
                      |||+||+++||+||++||||||+++|||||||||+||+||||++||||+||||||+|||+|++|+.||.|+|++|++++|
T Consensus         1 k~L~ea~~~vk~qa~~Mkr~Ld~~~l~~aLk~as~mL~ELRt~~LsPk~YYeLYm~vfd~L~~L~~~l~~~~~~~~~l~d   80 (762)
T PF03635_consen    1 KLLEEALSVVKQQAFLMKRCLDNNKLMDALKHASNMLSELRTSSLSPKQYYELYMQVFDELRHLSSYLKDEHKKGRKLAD   80 (762)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CcHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHhHHHHHHHHHHhccCCCcHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcchhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccchhHHHHHHHHHHhhccccCCCCCCCCCCCCC
Q 009970           91 LYELVQHAGNILPRLYLLCTVGSVYIKSKEAPAKDVLKDLVEMCRGIQHPVRGLFLRSYLSQISRDKLPDIGSEYEGDAD  170 (521)
Q Consensus        91 LYE~VQyagnIlPRLYLmITVG~~yi~~~~~p~~eILkDLvEMcRGVQhPlRGLFLR~YL~q~~k~~LPd~~~~~~~~~g  170 (521)
                      |||+||||||||||||||||||++||+++++|++||||||+|||||||||+|||||||||+|+|||+|||+++ +++++|
T Consensus        81 LYE~VQyagnIvPRLYLmitVG~~yi~~~~~~~~eilkDlvEMcrGVQhP~RGLFLR~YL~q~~k~~LP~~~~-~~~~~g  159 (762)
T PF03635_consen   81 LYELVQYAGNIVPRLYLMITVGSVYIKSKEAPAKEILKDLVEMCRGVQHPIRGLFLRYYLSQMTKDKLPDTGS-EEGNGG  159 (762)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHhcCChhhhHHHHHHHHHHHHhCCcccHHHHHHHHHHHHhccccchhHHHHHHHHHHHhhhhCCCCCC-CCCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999875 668899


Q ss_pred             ChhhhHHHHHHhHHHHHHHHHHHhccCCChhhhhhHHHHHHHHHHhhhhhHHhhhccCCCHHHHhhchhhHHHHHHHhcC
Q 009970          171 TVNDAMEFVLQNFTEMNKLWVRMQHQGPAREKDKREKERSELRDLVGKNLHVLSQIEGVDLDTYKETVLPRVLEQVVNCK  250 (521)
Q Consensus       171 ~~~dsi~Fll~NF~EMNKLWVRlQhqg~~rer~~R~~ER~eL~iLVGtnLvrLSqL~gi~~~~Y~~~iLP~iLeqIv~C~  250 (521)
                      ++.|||+||++||+||||||||||||||+|||+||++||+|||+||||||||||||||+|.++|++.|||+||||||+||
T Consensus       160 ~~~dsi~Fll~NF~EMNKLWVRlqhqg~srer~~R~~ER~eL~iLVG~NLvrLSqLeg~~~~~Y~~~iLP~ileqiv~c~  239 (762)
T PF03635_consen  160 DVNDSIDFLLTNFIEMNKLWVRLQHQGHSREREKREKERKELRILVGSNLVRLSQLEGVDLEMYKEKILPRILEQIVQCR  239 (762)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHhhHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcchhhHhHhHhHhccCchhhhhhHHHHHhhcccCCCCCCHHHHHHHHHHHHHhhhhhccCCCchh-----------hch
Q 009970          251 DEIAQCYLMDCIIQVFPDEYHLQTLEILLGAFPQLQPSVDIKTVLSRLMERLSNYAASSTEVLPEF-----------LQV  319 (521)
Q Consensus       251 D~lAQeYLmd~IIQvFPdEfHL~TL~~lL~a~~~l~~~V~v~~Il~~Li~RL~~y~~~~~~~~~~~-----------~~~  319 (521)
                      |++|||||||||||||||||||+||++||+||++|+|+||+++|+++|||||++|+.++++..++.           .++
T Consensus       240 D~lAQeYL~d~iIQvFPDefHL~TL~~lL~~~~~L~~~V~i~~il~~Li~RL~~y~~~~~~~~~~~~~~~~~~~~~~~~~  319 (762)
T PF03635_consen  240 DVLAQEYLMDVIIQVFPDEFHLQTLDELLSACLQLQPGVNIKEILISLIDRLANYAEREPESESEFESEKEEEEEIPEDV  319 (762)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhccccccccchhhhhcccchhhh
Confidence            999999999999999999999999999999999999999999999999999999999887754321           279


Q ss_pred             HHHHHHHHHHHHHHhhCCCCChhhHHHHHHHHHHhhhHhcCCCcchHHHHHHHHHHHhccCC---CCCChHHHHHHHHHH
Q 009970          320 EAFSKLNNAIGKVIEAQADMPILGAVTLYSSLLTFTLHVHPDRLDYADQVLGACVKKLSGEG---KLEDNRATKQIVALL  396 (521)
Q Consensus       320 ~lF~~f~~~~~~l~~~~~~l~l~~~i~l~~sll~l~l~~yp~~~~~vd~il~~~~~~l~~~~---~~~~~~~~~~l~~lL  396 (521)
                      ++|++||+++.+++++||++|+++++++++||++|+++|||++++|||.+|++|++++++.+   ...++++.+.|++||
T Consensus       320 ~lF~~f~~~~~~l~~~~~~l~~~~~i~l~~sll~l~l~~yp~~~~~vd~vl~~~~~~l~~~~~~~~~~~~~~~~~L~~LL  399 (762)
T PF03635_consen  320 DLFEVFWDQLSKLIEARPDLPLEDIISLLVSLLNLSLKCYPDNLDYVDKVLKFCAEKLSNIGDSGKNHSSEAQKELVKLL  399 (762)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999998873   345567889999999


Q ss_pred             HchhhhhhhhHHHhcCCCchHHHccCCchhhHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHHhCCCCCCCCC----
Q 009970          397 SAPLDKYNDIVTVLKLSNYPSVMEYVDSETNKVMAMVIIQSIMKNNTQISTADKVGALFELIKGLIRDLDGAAHDQ----  472 (521)
Q Consensus       397 ~~pl~~~~~~~~vl~l~~f~~ll~~l~~~~rk~va~~il~~~l~~~~~i~s~~~~~~ll~~~~~Li~~~~~~~~~~----  472 (521)
                      +.|+++|.++++++++++|++|++.|++++||+||..|+++++++++.|+|+++++.+|++++||++|.+++++++    
T Consensus       400 ~~Pi~~~~~i~~vL~L~~y~~Ll~~L~~~~rk~IA~~Ii~~iL~~~~~Ist~e~v~~ll~li~pLi~d~~d~~~~~~~~~  479 (762)
T PF03635_consen  400 TLPIDSYFSILTVLSLENYPPLLSLLPYETRKQIALEIIDNILENNTIISTPEEVDNLLELISPLIKDQDDQPSSEPDLK  479 (762)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HhHHhhcccHHHHHcCccHHHHHHhCChHHHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHhhCCCCCCCcccccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999887753    


Q ss_pred             CChhhhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhh
Q 009970          473 VDEDDFKEEQNSVARLIQMLQNDDTEEMFKVSERVILSLYD  513 (521)
Q Consensus       473 ~d~~~~~~eq~~var~ihli~~~d~~~q~~~l~~~r~~~~~  513 (521)
                      .++++|.+||++|||+||+++++||++||++|..+|..|..
T Consensus       480 ~~~eef~eeQ~~varliHLi~~~D~d~~~~iL~~~rk~~~~  520 (762)
T PF03635_consen  480 EDSEEFAEEQELVARLIHLIRSDDPDQQFEILNIARKHFGN  520 (762)
T ss_dssp             -----TCCCHHHHHHHHHHCTTSSHHHHHHHHHHHHHHHCT
T ss_pred             CchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence            47889999999999999999999999999999999999973

Vacuolar protein sorting-associated protein (Vps)5 is a yeast protein that is a subunit of a large multimeric complex, termed the retromer complex, involved in retrograde transport of proteins from endosomes to the trans-Golgi network. Sorting nexin (SNX) 1 and SNX2 are its mammalian orthologs []. To carry out its biological functions, Vps5 forms the retromer complex with at least four other proteins: Vps17, Vps26, Vps29, and Vps35.Vps35 contains a central region of weaker sequence similarity, thought to indicate the presence of at least three domains [].; PDB: 2R17_C.

>KOG1107 consensus Membrane coat complex Retromer, subunit VPS35 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG3682 consensus Predicted membrane protein (associated with esophageal cancer in humans) [Function unknown]	Back alignment and domain information

>KOG1107 consensus Membrane coat complex Retromer, subunit VPS35 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		521
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-14
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08
2r17_C		298	Vacuolar protein sorting-associated protein 35; pr	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 75.3 bits (184), Expect = 2e-14
 Identities = 92/581 (15%), Positives = 178/581 (30%), Gaps = 150/581 (25%)

Query: 2   MVDGVEDEEKWLAAGIA------GLQQNAFYMHRALDSNNLRDALKYS---AQMLSELRT 52
           + + +    K+L + I        +    +   R    N+ +   KY+    Q   +LR 
Sbjct: 83  VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQ 142

Query: 53  S--KLSPQKYYQLY-MR-------AFDELRKLEMFFKEETRRGCSI--IDLYELVQHAGN 100
           +  +L P K   +  +        A D        +K + +    I  ++L         
Sbjct: 143 ALLELRPAKNVLIDGVLGSGKTWVALDVCLS----YKVQCKMDFKIFWLNLKN-CNSPET 197

Query: 101 ILPRLYLLCTVGSVYIKSKEAPAKDVLKDLVEMCRGIQHPVRGLFL-----RSYLSQISR 155
           +L  L  L       I        D   ++      IQ  +R L          L  +  
Sbjct: 198 VLEMLQKLLYQ----IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL--VLL 251

Query: 156 D-------KLPDIG------SEYEGDADTVNDAMEFVLQNFTEMNKLWVRMQHQGPAREK 202
           +          ++       + ++   D ++ A               + + H       
Sbjct: 252 NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTH-----------ISLDHHSMTLTP 300

Query: 203 DKREKERSELRDLVGKNLHVLSQIEGVDLDTYKETVLPRVLEQVV-NCKDEIA------- 254
           D       E++ L+ K L    Q    DL     T  PR L  +  + +D +A       
Sbjct: 301 D-------EVKSLLLKYLDCRPQ----DLPREVLTTNPRRLSIIAESIRDGLATWDNWKH 349

Query: 255 -QCYLMDCIIQVF-----PDEY--HLQTLEILLGAFPQLQPSVDIKT-VLSRLMERLSNY 305
             C  +  II+       P EY      L +    FP   PS  I T +LS +      +
Sbjct: 350 VNCDKLTTIIESSLNVLEPAEYRKMFDRLSV----FP---PSAHIPTILLSLI------W 396

Query: 306 AASSTEVLPEFLQVEAFSKLNNAIGKVIEAQADMPILGAVTLYSSLLTFTLHVHPDRLDY 365
                  +   +      KL+     ++E Q        +++ S  +   L V  +    
Sbjct: 397 FDVIKSDVMVVVN-----KLHKY--SLVEKQPKE---STISIPS--IYLELKVKLENEYA 444

Query: 366 ADQVLGACVKKLSGEGKLEDNRATKQIVALLSAPLDKY---------NDIVTVLKLSNYP 416
             + +   V   +     + +             LD+Y          +I    +++ + 
Sbjct: 445 LHRSI---VDHYNIPKTFDSDDLIPP-------YLDQYFYSHIGHHLKNIEHPERMTLFR 494

Query: 417 SVMEYVDSE--TNKVMAMVIIQSIMKNNTQISTADKVGALFELIKGLIRDLDGAAHDQVD 474
            V  ++D      K     I       N   S  + +  L +  K  I D D      V+
Sbjct: 495 MV--FLDFRFLEQK-----IRHDSTAWNASGSILNTLQQL-KFYKPYICDNDPKYERLVN 546

Query: 475 E-DDF--KEEQNSV----ARLIQMLQNDDTEEMFKVSERVI 508
              DF  K E+N +      L+++    + E +F+ + + +
Sbjct: 547 AILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQV 587

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>2r17_C Vacuolar protein sorting-associated protein 35; protein transport, membrane, phosphorylation; 2.80A {Homo sapiens} Length = 298	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00