Citrus Sinensis ID: 009985

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-

MSRAPVDHSTSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREENAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLSYSNPYAQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYFQGSSSFSFRSSLPSGWPILLVSGVITLFSERIFLDRQDFWATFLIHFSVGLTCFCISSIVIYHRERSFIYKIIRFRNHKD

cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc

ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccEEEEEcccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcccHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc

msrapvdhstslsRTFKYLLATQflsrgipfvfnSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRAdikcdgasREENAAKLLKVAWLTLPLGIFITIGACFFVLWwqglsysnpyAQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFgafktsdlfpfrlgnmmSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFlpfeessyatfarsasgqypqkskKIGNSLAEALKLVLLIGLVFmafgpsysYSLVRLLYgkkwsdgeastaLRYYCLYVVVLAMNGTSEAFLHAVATEDQlkrsndslLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKhyfqgsssfsfrsslpsgwpiLLVSGVITLFSERIFLDRQDFWATFLIHFSVGLTCFCISSIVIYHRERSFIYKIIRFRNHKD

msrapvdhstslsRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREENAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLSYSNPYAQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFarsasgqypqkSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYFQGSSSFSFRSSLPSGWPILLVSGVITLFSERIFLDRQDFWATFLIHFSVGLTCFCISSIVIYHRERSFIYKiirfrnhkd

MSRAPVDHSTSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREENAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLSYSNPYAQAIFINGFACVLELLAEPLYILSQNllllrlrlVVETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASlflgywgyfllfgafKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYFQGsssfsfrssLPSGWPILLVSGVITLFSERIFLDRQDFWATFLIHFSVGLTCFCISSIVIYHRERSFIYKIIRFRNHKD

*************RTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREENAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLSYSNPYAQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFA**************GNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYFQGSSSFSFRSSLPSGWPILLVSGVITLFSERIFLDRQDFWATFLIHFSVGLTCFCISSIVIYHRERSFIYKIIRFR****

****************KYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRAD******SREENAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLSYSNPYAQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSA**********IGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYFQGSSSFSFRSSLPSGWPILLVSGVITLFSERIFLDRQDFWATFLIHFSVGLTCFCISSIVIYHRERSFIYKI*RFR****

**********SLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREENAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLSYSNPYAQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATF*************KIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYFQGSSSFSFRSSLPSGWPILLVSGVITLFSERIFLDRQDFWATFLIHFSVGLTCFCISSIVIYHRERSFIYKIIRFRNHKD

**********SLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIK*****REENAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLSYSNPYAQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYFQGSSSFSFRSSLPSGWPILLVSGVITLFSERIFLDRQDFWATFLIHFSVGLTCFCISSIVIYHRERSFIYKIIRFRN***

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		521	2.2.26 [Sep-21-2011]
Q54IV7		540	Protein RFT1 homolog OS=D	yes	no	0.880	0.85	0.328	2e-65
Q0D2E8		539	Protein RFT1 homolog OS=X	yes	no	0.896	0.866	0.346	9e-59
Q96AA3		541	Protein RFT1 homolog OS=H	yes	no	0.884	0.852	0.321	2e-51
Q8C3B8		541	Protein RFT1 homolog OS=M	yes	no	0.911	0.878	0.323	4e-51
Q9Y123		556	Protein RFT1 homolog OS=D	yes	no	0.788	0.739	0.298	3e-41
Q6FPE8		551	Oligosaccharide transloca	yes	no	0.817	0.773	0.313	7e-40
P38206		574	Oligosaccharide transloca	yes	no	0.859	0.780	0.279	5e-39
O94302		527	Oligosaccharide transloca	yes	no	0.798	0.789	0.290	6e-36
P40913		556	Oligosaccharide transloca	yes	no	0.844	0.791	0.270	7e-36
Q754Q7		552	Oligosaccharide transloca	yes	no	0.834	0.788	0.287	6e-34

>sp\|Q54IV7\|RFT1_DICDI Protein RFT1 homolog OS=Dictyostelium discoideum GN=rft1 PE=3 SV=1	Back alignment and function desciption

 Score =  250 bits (639), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 176/535 (32%), Positives = 280/535 (52%), Gaps = 76/535 (14%)

Query: 18  YLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADI 77
           YL+  Q +SR   F+ N+ ++  + ++ + + A+Q+ L  + +LFLSRE  RRAC R +I
Sbjct: 20  YLIGLQIISRLFTFIINTLVIVGVDDSIFGVSAIQYQLLSSIILFLSREAIRRACTRVNI 79

Query: 78  KCDGASREENAAKLLKVAWLTLPLGIFITIGACFFVLWW---QGLSYSNPYAQAIFINGF 134
             D  + + N   ++ ++WL LP+GI ++I    F L+    + L   N Y   + +   
Sbjct: 80  T-DKLNNDNNLKSVINLSWLVLPIGIGLSIIFENFFLYTSTKETLEILN-YHYGLRLFTI 137

Query: 135 ACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGIV-FALSQ 193
           + +LELL+EP+YIL+QNLLL ++R  VE  A F + F+    IV    +  G++ F  +Q
Sbjct: 138 SSILELLSEPMYILAQNLLLFKIRTTVEGFALFFKTFSTYYFIVI---LNMGLIGFGYAQ 194

Query: 194 VAYAASLFLGYWGYFLLF--------------GAFKTSD-LFPFRLGNMMSYDKQLANMC 238
           + Y+ +L +GY+GYFL+                 FK+ D LFP +    +  D+ L  + 
Sbjct: 195 ILYSLTLVIGYFGYFLINIINNNKNKDNKEFSNCFKSIDQLFP-KFSTRI--DRNLIKLS 251

Query: 239 TLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFA 298
            L+T+QS  KLLLQEGEK VL + +T   QA++ +V  LGSL+VR +FLP EE+ +  F 
Sbjct: 252 LLYTWQSIYKLLLQEGEKFVLFFSETNQGQAIFAIVSNLGSLIVRFLFLPIEETCFLMFP 311

Query: 299 R-------------------------SASGQYPQKSKKIGNSLAEALKLVLLIGLVFMAF 333
           +                           +       K   N L   +K ++L+ LVF  F
Sbjct: 312 KLFPTINNNNNNNNNNNNNNNNNNKNQENNNNNDDFKNGANVLIVIMKFLILVSLVFTCF 371

Query: 334 GPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSND 393
           GP +S+ L+ LLY  K+ D  A   L +YC+YV  LA+NG SE+F+H+VA EDQLK  N 
Sbjct: 372 GPGFSHLLLNLLYNNKFRDTNAGVLLGFYCIYVGFLAINGVSESFVHSVAKEDQLKTVNW 431

Query: 394 SLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYFQGSSSFSFRSSL 453
            L++   IY++  +I  +   ++G+ILAN LN+ L                      + +
Sbjct: 432 VLIIIGFIYLLFTLIFCKLFQNIGIILANCLNIKL---------------------SNMI 470

Query: 454 PSGWPIL--LVSGVITLFSERIFLDRQDFWATFLIHFSVGLTCFCISSIVIYHRE 506
           P+   +L  ++S +IT  S +   +   F +T  IH  +G+ CF  +   IY +E
Sbjct: 471 PNKMVLLSFIISFIITNLSNKYIYNAVSFKST-CIHLLIGIICFIQTCTFIYLKE 524

May be involved in N-linked oligosaccharide assembly.
Dictyostelium discoideum (taxid: 44689)

>sp\|Q0D2E8\|RFT1_XENTR Protein RFT1 homolog OS=Xenopus tropicalis GN=rft1 PE=2 SV=1	Back alignment and function description

>sp\|Q96AA3\|RFT1_HUMAN Protein RFT1 homolog OS=Homo sapiens GN=RFT1 PE=1 SV=1	Back alignment and function description

>sp\|Q8C3B8\|RFT1_MOUSE Protein RFT1 homolog OS=Mus musculus GN=Rft1 PE=2 SV=2	Back alignment and function description

>sp\|Q9Y123\|RFT1_DROME Protein RFT1 homolog OS=Drosophila melanogaster GN=CG3149 PE=2 SV=1	Back alignment and function description

>sp\|Q6FPE8\|RFT1_CANGA Oligosaccharide translocation protein RFT1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=RFT1 PE=3 SV=1	Back alignment and function description

>sp\|P38206\|RFT1_YEAST Oligosaccharide translocation protein RFT1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RFT1 PE=1 SV=1	Back alignment and function description

>sp\|O94302\|RFT1_SCHPO Oligosaccharide translocation protein rft1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rft1 PE=3 SV=1	Back alignment and function description

>sp\|P40913\|RFT1_KLULA Oligosaccharide translocation protein RFT1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=RFT1 PE=3 SV=2	Back alignment and function description

>sp\|Q754Q7\|RFT1_ASHGO Oligosaccharide translocation protein RFT1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=RFT1 PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		521
356531685		518	PREDICTED: protein RFT1 homolog [Glycine	0.984	0.990	0.762	0.0
356544271		518	PREDICTED: LOW QUALITY PROTEIN: protein	0.984	0.990	0.752	0.0
449458359		528	PREDICTED: protein RFT1 homolog [Cucumis	0.990	0.977	0.745	0.0
224138472		476	predicted protein [Populus trichocarpa]	0.909	0.995	0.801	0.0
334187490		611	lipid transporter [Arabidopsis thaliana]	0.988	0.842	0.709	0.0
38260621		481	nuclear division RFT1-like protein [Sisy	0.907	0.983	0.747	0.0
38260690		478	nuclear division RFT1-like protein [Arab	0.909	0.991	0.726	0.0
297806793		478	hypothetical protein ARALYDRAFT_325378 [	0.909	0.991	0.726	0.0
38260636		478	nuclear division RFT1-like protein [Arab	0.909	0.991	0.726	0.0
38260654		478	nuclear division RFT1-like protein [Caps	0.909	0.991	0.720	0.0

>gi\|356531685\|ref\|XP_003534407.1\| PREDICTED: protein RFT1 homolog [Glycine max]	Back alignment and taxonomy information

 Score =  810 bits (2093), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/514 (76%), Positives = 445/514 (86%), Gaps = 1/514 (0%)

Query: 8   HSTSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREG 67
            +T+LSRTFKYLLATQFLSRGIPF+FN+WIVRHLT+ DYA+YAVQFHL VTC+LFLSREG
Sbjct: 6   DATNLSRTFKYLLATQFLSRGIPFIFNTWIVRHLTQEDYALYAVQFHLLVTCILFLSREG 65

Query: 68  FRRACMRADIKCDGASREENAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLSYSNPYAQ 127
           FRRAC+R D+KCDG+S  +   KL+KV W++ PLGIFITI  C FV WWQ +SYS+P+ Q
Sbjct: 66  FRRACLRMDLKCDGSSMGD-VVKLMKVVWMSFPLGIFITIVVCLFVFWWQQISYSSPHGQ 124

Query: 128 AIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGI 187
           AI INGFAC+LELLAEP+YILSQNL+LL LRL+VETVAT SRC TM  LIVKQ  MEK I
Sbjct: 125 AILINGFACILELLAEPVYILSQNLVLLELRLMVETVATLSRCLTMYFLIVKQTGMEKSI 184

Query: 188 VFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFR 247
           +FALSQ AY A LFLGYWGY LL   F+ S LFPFR G M+ +D+QL+ MC LFTFQSFR
Sbjct: 185 IFALSQSAYGACLFLGYWGYLLLSQKFRVSYLFPFREGKMIDFDQQLSKMCILFTFQSFR 244

Query: 248 KLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQ 307
           KL+LQEGEK+VLVWLDTPYNQAVYGLVDKLGSLVVR+VFLPFEESSY TFARSASGQYP 
Sbjct: 245 KLILQEGEKIVLVWLDTPYNQAVYGLVDKLGSLVVRLVFLPFEESSYVTFARSASGQYPG 304

Query: 308 KSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVV 367
           KSKK+GNSL E+LKLVLLIGLVFMAFGPSYSYSL+RLLYG+KWSDGEASTALR YC YV+
Sbjct: 305 KSKKLGNSLTESLKLVLLIGLVFMAFGPSYSYSLIRLLYGEKWSDGEASTALRCYCFYVI 364

Query: 368 VLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMI 427
           VLAMNGTSEAF+HAVATE QLKRSNDSLL+FS+IYIV+NV+LI+ AG+VGLILANSLNM 
Sbjct: 365 VLAMNGTSEAFMHAVATERQLKRSNDSLLIFSLIYIVLNVMLIRLAGAVGLILANSLNMT 424

Query: 428 LRIIYSAIFIKHYFQGSSSFSFRSSLPSGWPILLVSGVITLFSERIFLDRQDFWATFLIH 487
           LRI+YSA FIK+YFQGSSSFSF   LPSGW  LL+SGVITL SE + LDR +F  +F+ H
Sbjct: 425 LRILYSATFIKNYFQGSSSFSFCGCLPSGWITLLLSGVITLVSENVLLDRDNFSLSFMFH 484

Query: 488 FSVGLTCFCISSIVIYHRERSFIYKIIRFRNHKD 521
            SVGL CFC+SS VIY RE+ FI +IIRF +H D
Sbjct: 485 LSVGLACFCVSSYVIYCREKPFIRRIIRFNDHVD 518

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|356544271\|ref\|XP_003540577.1\| PREDICTED: LOW QUALITY PROTEIN: protein RFT1 homolog [Glycine max]	Back alignment and taxonomy information

>gi\|449458359\|ref\|XP_004146915.1\| PREDICTED: protein RFT1 homolog [Cucumis sativus] gi\|449520289\|ref\|XP_004167166.1\| PREDICTED: protein RFT1 homolog [Cucumis sativus]	Back alignment and taxonomy information

>gi\|224138472\|ref\|XP_002326611.1\| predicted protein [Populus trichocarpa] gi\|222833933\|gb\|EEE72410.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|334187490\|ref\|NP_196380.5\| lipid transporter [Arabidopsis thaliana] gi\|332003804\|gb\|AED91187.1\| lipid transporter [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|38260621\|gb\|AAR15439.1\| nuclear division RFT1-like protein [Sisymbrium irio]	Back alignment and taxonomy information

>gi\|38260690\|gb\|AAR15504.1\| nuclear division RFT1-like protein [Arabidopsis arenosa]	Back alignment and taxonomy information

>gi\|297806793\|ref\|XP_002871280.1\| hypothetical protein ARALYDRAFT_325378 [Arabidopsis lyrata subsp. lyrata] gi\|297317117\|gb\|EFH47539.1\| hypothetical protein ARALYDRAFT_325378 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|38260636\|gb\|AAR15453.1\| nuclear division RFT1-like protein [Arabidopsis arenosa]	Back alignment and taxonomy information

>gi\|38260654\|gb\|AAR15470.1\| nuclear division RFT1-like protein [Capsella rubella]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		521
DICTYBASE\|DDB_G0288491		540	rft1 "RFT1 family protein" [Di	0.531	0.512	0.322	1.5e-58
UNIPROTKB\|F1P5L5		535	RFT1 "Uncharacterized protein"	0.917	0.893	0.322	8.6e-56
ZFIN\|ZDB-GENE-110411-126		540	rft1 "RFT1 homolog (S. cerevis	0.938	0.905	0.297	9.2e-52
RGD\|1562654		541	Rft1 "RFT1 homolog (S. cerevis	0.913	0.879	0.311	1.2e-51
MGI\|MGI:3607791		541	Rft1 "RFT1 homolog (S. cerevis	0.913	0.879	0.309	8.3e-51
UNIPROTKB\|E1BNC6		541	RFT1 "Uncharacterized protein"	0.919	0.885	0.297	1.1e-50
UNIPROTKB\|E2RQ01		541	RFT1 "Uncharacterized protein"	0.915	0.881	0.302	7.4e-50
UNIPROTKB\|Q96AA3		541	RFT1 "Protein RFT1 homolog" [H	0.892	0.859	0.306	1.5e-49
FB\|FBgn0027564		556	CG3149 [Drosophila melanogaste	0.518	0.485	0.324	6e-40
UNIPROTKB\|B5MDE0		502	RFT1 "Protein RFT1 homolog" [H	0.537	0.557	0.360	2.5e-39

DICTYBASE\|DDB_G0288491 rft1 "RFT1 family protein" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

 Score = 361 (132.1 bits), Expect = 1.5e-58, Sum P(2) = 1.5e-58
 Identities = 96/298 (32%), Positives = 154/298 (51%)

Query:    18 YLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADI 77
             YL+  Q +SR   F+ N+ ++  + ++ + + A+Q+ L  + +LFLSRE  RRAC R +I
Sbjct:    20 YLIGLQIISRLFTFIINTLVIVGVDDSIFGVSAIQYQLLSSIILFLSREAIRRACTRVNI 79

Query:    78 KCDGASREENAAKLLKVAWLTLPLGIFITIGACFFVLWW---QGLSYSNPYAQAIFINGF 134
               D  + + N   ++ ++WL LP+GI ++I    F L+    + L   N Y   + +   
Sbjct:    80 T-DKLNNDNNLKSVINLSWLVLPIGIGLSIIFENFFLYTSTKETLEILN-YHYGLRLFTI 137

Query:   135 ACVLELLAEPLYILSQNXXXXXXXXVVETVATFSRCFTMCILIVKQYEMEKGIV-FALSQ 193
             + +LELL+EP+YIL+QN         VE  A F + F+    IV    +  G++ F  +Q
Sbjct:   138 SSILELLSEPMYILAQNLLLFKIRTTVEGFALFFKTFSTYYFIVI---LNMGLIGFGYAQ 194

Query:   194 VAYAASXXXXXXXXXXXXXXX--KTSDLFPF--------RLGNMMS--YDKQLANMCTLF 241
             + Y+ +                 K  D   F        +L    S   D+ L  +  L+
Sbjct:   195 ILYSLTLVIGYFGYFLINIINNNKNKDNKEFSNCFKSIDQLFPKFSTRIDRNLIKLSLLY 254

Query:   242 TFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFAR 299
             T+QS  KLLLQEGEK VL + +T   QA++ +V  LGSL+VR +FLP EE+ +  F +
Sbjct:   255 TWQSIYKLLLQEGEKFVLFFSETNQGQAIFAIVSNLGSLIVRFLFLPIEETCFLMFPK 312

GO:0016021 "integral to membrane" evidence=IEA

GO:0006869 "lipid transport" evidence=IEA

GO:0005319 "lipid transporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB\|F1P5L5 RFT1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-110411-126 rft1 "RFT1 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

RGD\|1562654 Rft1 "RFT1 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

MGI\|MGI:3607791 Rft1 "RFT1 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BNC6 RFT1 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|E2RQ01 RFT1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|Q96AA3 RFT1 "Protein RFT1 homolog" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

FB\|FBgn0027564 CG3149 [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

UNIPROTKB\|B5MDE0 RFT1 "Protein RFT1 homolog" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q54IV7	RFT1_DICDI	No assigned EC number	0.3289	0.8809	0.85	yes	no
Q8C3B8	RFT1_MOUSE	No assigned EC number	0.3236	0.9117	0.8780	yes	no
Q96AA3	RFT1_HUMAN	No assigned EC number	0.3214	0.8848	0.8521	yes	no
Q0D2E8	RFT1_XENTR	No assigned EC number	0.3461	0.8963	0.8664	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		521
cd13130		441	cd13130, MATE_rft1, Rft1-like subfamily of the mul	0.0
pfam04506		533	pfam04506, Rft-1, Rft protein	4e-67
COG2244		480	COG2244, RfbX, Membrane protein involved in the ex	1e-07
cd13124		434	cd13124, MATE_SpoVB_like, Stage V sporulation prot	7e-05
cd13128		402	cd13128, MATE_Wzx_like, Wzx, a subfamily of the mu	0.002

>gnl\|CDD\|240535 cd13130, MATE_rft1, Rft1-like subfamily of the multidrug and toxic compound extrusion family (MATE)	Back alignment and domain information

 Score =  566 bits (1461), Expect = 0.0
 Identities = 275/442 (62%), Positives = 320/442 (72%), Gaps = 10/442 (2%)

Query: 11  SLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRR 70
           S SR FKYL+A Q  SR I FVFN  ++R LT   +  Y++QF LF T VLFLSREGFRR
Sbjct: 1   SSSRGFKYLIAAQLFSRIITFVFNQLLLRFLTPRYFG-YSIQFELFQTTVLFLSREGFRR 59

Query: 71  ACMRADIKCDG-----ASREENAAKLLKVAWLTLPLGIFITIGACFFVLW-WQGLSYSNP 124
           AC+R +    G         E  AK+LK+AW  +P GI  TI  C  VLW  + LSYS P
Sbjct: 60  ACLRINSSGAGITTESNKSGELQAKVLKIAWAIVPGGIISTILGCLVVLWASESLSYSPP 119

Query: 125 YAQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEME 184
           YA+AI I GFAC+LELL+EPLYILSQNLL  RLR +VET AT  RC T  ILIV     E
Sbjct: 120 YAKAILIYGFACILELLSEPLYILSQNLLKFRLRAIVETAATLVRCLTTFILIVLGTGKE 179

Query: 185 -KGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTF 243
            K +VFAL Q+AY   LF GYW YFL     K S LFP R  N+M +DK    MC LFT 
Sbjct: 180 PKVLVFALGQLAYGVCLFFGYWYYFLQCFVSKKSSLFPLRNSNLMFFDKPTLRMCGLFTI 239

Query: 244 QSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASG 303
           QSF K LL EG+K+VLVW DTPYNQ VY LVD  GSLVVR+VFLPFEESSY TFAR AS 
Sbjct: 240 QSFFKHLLTEGDKIVLVWFDTPYNQGVYALVDNYGSLVVRIVFLPFEESSYTTFARLASE 299

Query: 304 QYPQKSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYC 363
           + P+  KK+GNSL EALKL   +GLV +AFGPSYSYSL+RLLYG++WSDGEA  AL  YC
Sbjct: 300 KNPKALKKLGNSLTEALKLYSYVGLVAIAFGPSYSYSLLRLLYGERWSDGEAPDALGVYC 359

Query: 364 LYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQ--SAGSVGLILA 421
           LY+  LA+NGTSEAFLH+VATE+QL+R N  LLVFSVIY+++NV+LI+  S G+VGLILA
Sbjct: 360 LYIPFLALNGTSEAFLHSVATEEQLQRQNVWLLVFSVIYLILNVLLIRWFSLGAVGLILA 419

Query: 422 NSLNMILRIIYSAIFIKHYFQG 443
           N LNM+LRI YS +FIKHYF+G
Sbjct: 420 NILNMLLRIGYSLVFIKHYFKG 441

This eukaryotic family may function as a transporter, shuttling phospholipids, lipopolysaccharides or oligosaccharides from cytoplasmic to the lumenal side of the endoplasmic reticulum. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. Length = 441

>gnl\|CDD\|218119 pfam04506, Rft-1, Rft protein	Back alignment and domain information

>gnl\|CDD\|225153 COG2244, RfbX, Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|240529 cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins	Back alignment and domain information

>gnl\|CDD\|240533 cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		521
KOG2864		530	consensus Nuclear division RFT1 protein [Cell cycl	100.0
PF04506		549	Rft-1: Rft protein; InterPro: IPR007594 Asymmetric	100.0
PRK10459		492	colanic acid exporter; Provisional	100.0
TIGR01695		502	mviN integral membrane protein MviN. This model re	100.0
TIGR02900		488	spore_V_B stage V sporulation protein B. SpoVB is	100.0
COG2244		480	RfbX Membrane protein involved in the export of O-	99.97
PRK15099		416	O-antigen translocase; Provisional	99.97
PF01943		273	Polysacc_synt: Polysaccharide biosynthesis protein	99.87
PF03023		451	MVIN: MviN-like protein; InterPro: IPR004268 This	99.78
PF13440		251	Polysacc_synt_3: Polysaccharide biosynthesis prote	99.77
COG0728		518	MviN Uncharacterized membrane protein, putative vi	99.66
TIGR00797		342	matE putative efflux protein, MATE family. The MAT	99.63
PRK09575		453	vmrA multidrug efflux pump VmrA; Reviewed	99.6
PRK01766		456	multidrug efflux protein; Reviewed	99.59
PRK00187		464	multidrug efflux protein NorA; Provisional	99.53
COG0534		455	NorM Na+-driven multidrug efflux pump [Defense mec	99.46
PRK10367		441	DNA-damage-inducible SOS response protein; Provisi	99.35
PRK10189		478	MATE family multidrug exporter; Provisional	99.3
PRK01766		456	multidrug efflux protein; Reviewed	98.99
PRK09575		453	vmrA multidrug efflux pump VmrA; Reviewed	98.92
PRK10367		441	DNA-damage-inducible SOS response protein; Provisi	98.87
COG0534		455	NorM Na+-driven multidrug efflux pump [Defense mec	98.86
TIGR00797		342	matE putative efflux protein, MATE family. The MAT	98.84
PRK10189		478	MATE family multidrug exporter; Provisional	98.77
PRK00187		464	multidrug efflux protein NorA; Provisional	98.63
TIGR01695		502	mviN integral membrane protein MviN. This model re	98.5
TIGR02900		488	spore_V_B stage V sporulation protein B. SpoVB is	98.41
PF14667		146	Polysacc_synt_C: Polysaccharide biosynthesis C-ter	98.41
PRK15099		416	O-antigen translocase; Provisional	97.93
PF03023		451	MVIN: MviN-like protein; InterPro: IPR004268 This	97.89
PF01554		162	MatE: MatE; InterPro: IPR002528 Characterised memb	97.74
PF01943		273	Polysacc_synt: Polysaccharide biosynthesis protein	97.6
PF13440		251	Polysacc_synt_3: Polysaccharide biosynthesis prote	97.37
COG0728		518	MviN Uncharacterized membrane protein, putative vi	97.24
PRK10459		492	colanic acid exporter; Provisional	97.19
COG2244		480	RfbX Membrane protein involved in the export of O-	95.59
KOG1347		473	consensus Uncharacterized membrane protein, predic	94.11
PF07260		345	ANKH: Progressive ankylosis protein (ANKH); InterP	94.08
PF01554		162	MatE: MatE; InterPro: IPR002528 Characterised memb	90.64

>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

Probab=100.00  E-value=3.8e-76  Score=586.07  Aligned_cols=496  Identities=39%  Similarity=0.602  Sum_probs=430.1

Q ss_pred             CcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccccCCCccch
Q 009985            6 VDHSTSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASRE   85 (521)
Q Consensus         6 ~~~~~~~~~~~~w~~~~q~~~r~i~Fi~~~iLaRlLsP~~fGlva~~l~~~~~~~~~l~~~g~~~Alir~~~~~~~~~~~   85 (521)
                      +++-.+..+|+..++.+|+..|++||++|.++.|.++||.+|++++.++++++|++|++||.+|.|.+|..+..+|    
T Consensus         4 ~~vL~ss~~ga~~~i~~Q~~~RiiTF~lN~~liR~~s~~v~gi~nvrl~lL~sTiLFlsREair~A~l~~gs~~~d----   79 (530)
T KOG2864|consen    4 DSVLESSFSGAVFSIRGQLLARIITFALNALLIRFLSPEVLGIVNVRLELLQSTILFLSREAIRLAELRIGSEPAD----   79 (530)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcChhheehhHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCc----
Confidence            4566778899999999999999999999999999999999999999999999999999999999999999877654    


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc----CCCchhHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHH
Q 009985           86 ENAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLS----YSNPYAQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVV  161 (521)
Q Consensus        86 ~~~~~~~n~~~~~i~~g~~~~~~~~~~~~~~~~~~----~~~~y~~~~~v~~l~~ii~~l~~p~~~~~q~~l~f~~~~~~  161 (521)
                       ++.+..|.-|++.|++.+..+..++++++|....    ..++|...+.++++++++|.++||.+...|..++++.++..
T Consensus        80 -~~te~~n~~wlS~~L~~~i~~~~i~~wl~~~~s~d~i~~~p~y~~~I~~~~~S~vvELlsEp~~iv~Q~~~~~~~~~i~  158 (530)
T KOG2864|consen   80 -TWTEFINLLWLSVPLQTAINVACIYFWLGFLSSSDEISYSPLYAFAIFIIGLSIVVELLSEPLYIVSQCGLKVQLRAIA  158 (530)
T ss_pred             -cHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhccchhhcCchHhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence             6778889999999999999988887766654321    45678899999999999999999999999999999999999


Q ss_pred             HHHHHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHH-HHHHHHHhc-------ccccCCccccccCC--ccccc
Q 009985          162 ETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLG-YWGYFLLFG-------AFKTSDLFPFRLGN--MMSYD  231 (521)
Q Consensus       162 ~~~a~~~~~~~~i~l~~~~~~~~~v~a~~~~ql~~~~~~~i~-~~~~~~~~~-------~~~~~~~~p~~~~~--~~~~~  231 (521)
                      |+.+++++|++..+..+..++.+++.+|+++|++++.+.+++ +|.|+..++       ..|.++.+|+..++  .+.+|
T Consensus       159 e~l~~~v~~i~~fa~lv~~~~~~~l~~FAlaql~~~itl~l~y~~~Yf~~~~s~~~~~~~~r~Sdllpk~~~n~~~~ffd  238 (530)
T KOG2864|consen  159 EGLATIVKCIVLFAGLVMGPNMYALLAFALAQLAYAITLLLCYYWFYFYIRGSIPETEPFSRFSDLLPKVSENERGIFFD  238 (530)
T ss_pred             hHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcccccchhhhhhhccCCCCCCcccccc
Confidence            999999999988777677778799999999999999998874 577776654       12334566776544  45689


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhhh--hcCCccchhHHHHHhhhhHHHHHHHhhhhHhhHHHHHHHhcCCCchhh
Q 009985          232 KQLANMCTLFTFQSFRKLLLQEGEKLVLVW--LDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKS  309 (521)
Q Consensus       232 k~l~~f~~~l~~~si~~~llt~~d~liig~--~~~~~~~G~Y~~a~~l~sl~~~~~~~pi~~~~~p~fs~~~~~~~~~~~  309 (521)
                      ++..+..++++.|+++||++|||||++++.  ..+..|||+|+.++|+||+++|.+|+||||+++-+|++..+++++||.
T Consensus       239 ~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~~  318 (530)
T KOG2864|consen  239 NDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQENV  318 (530)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhhH
Confidence            999999999999999999999999999995  456779999999999999999999999999999999999999888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHhhhhHHHHHHHhCCHHHHH
Q 009985          310 KKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLK  389 (521)
Q Consensus       310 ~~l~~~~~~~l~~~~~l~~~~~~~~~~~a~~li~ll~g~kw~~~~~~~il~~~~~~~~~~~~ng~~eaf~~a~~~~~~l~  389 (521)
                      ++..+++.+.+|++.++|+.+++||++||++++.+++|+||++++.|..+|+||.|+|++++||++|||.+|+++++++.
T Consensus       319 k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~qi~  398 (530)
T KOG2864|consen  319 KKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQID  398 (530)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHHHH
Confidence            88899999999999999999999999999999999999999999889999999999999999999999999999999999


Q ss_pred             HhhhHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCCChhH-HHHHHHHHHH
Q 009985          390 RSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYFQGSSSFSFRSSLPSGWP-ILLVSGVITL  468 (521)
Q Consensus       390 ~~~~~~~~~s~i~i~~~~~l~~~~G~~G~i~a~~i~~~~ri~~~~~~i~~~~~~~~~~~l~~~~p~~~~-~~~~~~~~~~  468 (521)
                      |+|+.|.++++++++.+++++.++|..|+++||++||.+||.||+++|++++++.. ..-...+|.... +...++... 
T Consensus       399 ~~n~~mlafSviflilsylL~~~~~~~GlIlANiiNm~lRIlys~~fI~~~yr~~~-ld~~~~l~~~~~~~~~~~~~s~-  476 (530)
T KOG2864|consen  399 KHNKFMLAFSVIFLILSYLLIRWFGLVGLILANIINMSLRILYSLRFIRHYYRDLS-LDRSLFLPFGPTLSIIFAGSSL-  476 (530)
T ss_pred             hcccchhHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHhcccC-CChhhccCcchhHHHHHHhcch-
Confidence            99999999999999999999999999999999999999999999999999996621 111222332211 111111110 


Q ss_pred             hhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 009985          469 FSERIFLDRQDFWATFLIHFSVGLTCFCISSIVIYHRERSFIYKI  513 (521)
Q Consensus       469 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~  513 (521)
                          +. ...........|+.+|++|.+..+......|+++.+..
T Consensus       477 ----l~-~~~~~~s~l~~hi~igvvc~la~l~~~al~~~~~~~~~  516 (530)
T KOG2864|consen  477 ----LC-CTTWWLSYLAAHIAIGVVCLLATLGSTALILVVFIVIL  516 (530)
T ss_pred             ----hh-ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                11 11233455677999999999999999999999888744

>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []	Back alignment and domain information

>PRK10459 colanic acid exporter; Provisional	Back alignment and domain information

>TIGR01695 mviN integral membrane protein MviN	Back alignment and domain information

>TIGR02900 spore_V_B stage V sporulation protein B	Back alignment and domain information

>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]	Back alignment and domain information

>PRK15099 O-antigen translocase; Provisional	Back alignment and domain information

>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide	Back alignment and domain information

>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions	Back alignment and domain information

>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein	Back alignment and domain information

>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]	Back alignment and domain information

>TIGR00797 matE putative efflux protein, MATE family	Back alignment and domain information

>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed	Back alignment and domain information

>PRK01766 multidrug efflux protein; Reviewed	Back alignment and domain information

>PRK00187 multidrug efflux protein NorA; Provisional	Back alignment and domain information

>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]	Back alignment and domain information

>PRK10367 DNA-damage-inducible SOS response protein; Provisional	Back alignment and domain information

>PRK10189 MATE family multidrug exporter; Provisional	Back alignment and domain information

>PRK01766 multidrug efflux protein; Reviewed	Back alignment and domain information

>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed	Back alignment and domain information

>PRK10367 DNA-damage-inducible SOS response protein; Provisional	Back alignment and domain information

>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]	Back alignment and domain information

>TIGR00797 matE putative efflux protein, MATE family	Back alignment and domain information

>PRK10189 MATE family multidrug exporter; Provisional	Back alignment and domain information

>PRK00187 multidrug efflux protein NorA; Provisional	Back alignment and domain information

>TIGR01695 mviN integral membrane protein MviN	Back alignment and domain information

>TIGR02900 spore_V_B stage V sporulation protein B	Back alignment and domain information

>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain	Back alignment and domain information

>PRK15099 O-antigen translocase; Provisional	Back alignment and domain information

>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions	Back alignment and domain information

>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters	Back alignment and domain information

>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide	Back alignment and domain information

>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein	Back alignment and domain information

>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]	Back alignment and domain information

>PRK10459 colanic acid exporter; Provisional	Back alignment and domain information

>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]	Back alignment and domain information

>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]	Back alignment and domain information

>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences	Back alignment and domain information

>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		521
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 41.8 bits (97), Expect = 6e-04
 Identities = 58/402 (14%), Positives = 112/402 (27%), Gaps = 105/402 (26%)

Query: 117 QGLSYSN--PYAQAIFINGFAC--VLELLAEPL------YILSQNLLLLRLRLVVETVAT 166
               Y +     +  F++ F C  V ++    L      +I+     +     +      
Sbjct: 14  HQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW---- 69

Query: 167 FSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGN 226
                    L+ KQ EM +  V  + ++ Y        +    L    KT    P     
Sbjct: 70  --------TLLSKQEEMVQKFVEEVLRINYK-------F----LMSPIKTEQRQP--SMM 108

Query: 227 MMSYDKQLANMCTLFTFQSFRKLLLQEGEKL-----VLVWLDTPYNQAVYGL--VDK--L 277
              Y +Q   +      Q F K  +   +        L+ L    N  + G+    K  +
Sbjct: 109 TRMYIEQRDRLYN--DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV 166

Query: 278 GSLVVR----MVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEALKLVLLIGLVFMAF 333
              V         + F+   +       S   P+   ++   L   +           + 
Sbjct: 167 ALDVCLSYKVQCKMDFK-IFWLNLKNCNS---PETVLEMLQKLLYQIDPNWTSRSDHSSN 222

Query: 334 GP----SYSYSLVRLLYGKKWSDGEASTALRYYCLYV--------VVLAMNGTSEAFLHA 381
                 S    L RLL  K + +          CL V           A N + +     
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYEN----------CLLVLLNVQNAKAWNAFNLSCKIL--- 269

Query: 382 VATEDQLKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYF 441
           + T    K+  D L   +  +I ++        S+ L      +++L+ +          
Sbjct: 270 LTTRF--KQVTDFLSAATTTHISLDHH------SMTLTPDEVKSLLLKYL---------- 311

Query: 442 QGSSSFSFRSSLPSGWPILLVSGVITLFSE--RIFLDRQDFW 481
                      + +  P       +++ +E  R  L   D W
Sbjct: 312 -DCRPQDLPREVLTTNPR-----RLSIIAESIRDGLATWDNW 347

PyMOL of 1vt4

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		521
3mkt_A		460	Multi antimicrobial extrusion protein (Na(+)/drug	99.93
3mkt_A		460	Multi antimicrobial extrusion protein (Na(+)/drug	98.94

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A	Back alignment and structure

Probab=99.93  E-value=1.1e-22  Score=214.82  Aligned_cols=420  Identities=13%  Similarity=0.058  Sum_probs=294.0

Q ss_pred             cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccccCCCccchh
Q 009985            7 DHSTSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREE   86 (521)
Q Consensus         7 ~~~~~~~~~~~w~~~~q~~~r~i~Fi~~~iLaRlLsP~~fGlva~~l~~~~~~~~~l~~~g~~~Alir~~~~~~~~~~~~   86 (521)
                      +..++..+.+.+.+++++.+++.+++-+.+++| ++||++|.+++...+. .....+ ..|+..+..+.-.....+++++
T Consensus         9 ~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~-lg~~~~~~~~~~~~i~-~~~~~~-~~g~~~~~~~~is~~~g~~~~~   85 (460)
T 3mkt_A            9 KEASNLIKLATPVLIASVAQTGMGFVDTIMAGG-VSAIDMAAVSIAASIW-LPSILF-GVGLLMALVPVVAQLNGAGRQH   85 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH-HTTTTSSHHHHHHHHH-HHHHHH-HHHHHHHHGGGCTTTTSSSSTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHH-HHHHHH-HHHHHHHHHHHHHHHHcCCChh
Confidence            345677888899999999999999999999999 8999999999966553 333333 4788888765433221111111


Q ss_pred             hHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCch-----hHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhH
Q 009985           87 NAAKLL-KVAWLTLPLGIFITIGACFFVLWWQGLSYSNPY-----AQAIFINGFACVLELLAEPLYILSQNLLLLRLRLV  160 (521)
Q Consensus        87 ~~~~~~-n~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~y-----~~~~~v~~l~~ii~~l~~p~~~~~q~~l~f~~~~~  160 (521)
                      +.++.. +..++.+..++++.++ .....+.......++.     ...+++++.+.++..+.......+|.+.++|....
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  164 (460)
T 3mkt_A           86 KIPFEVHQGLILALLVSVPIIAV-LFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMV  164 (460)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHH-HHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence            333333 2334445555554433 1211111111112221     13466777788888877777777888888888888


Q ss_pred             HHHHHHHHhHHHHHHHHhh-c--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCccccccCCcccccHHHHHH
Q 009985          161 VETVATFSRCFTMCILIVK-Q--YEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANM  237 (521)
Q Consensus       161 ~~~~a~~~~~~~~i~l~~~-~--~~~~~v~a~~~~ql~~~~~~~i~~~~~~~~~~~~~~~~~~p~~~~~~~~~~k~l~~f  237 (521)
                      .+..+.+++.+....++.. .  ++ +|+.+.+++..+..++..+..+.+..++++.++....+.....+.+..|+++++
T Consensus       165 ~~~~~~~~~i~l~~~li~~~~~~p~-~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  243 (460)
T 3mkt_A          165 IGFIGLLLNIPLNWIFVYGKFGAPE-LGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRL  243 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCTTCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCCcc-cchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHH
Confidence            8888888887777665422 1  13 677777777666665554444333332211110000011001122345899999


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhhcCCccchhHHHHHhhhhHHHHHHHhhhhHhhHHHHHHHhcCCCchhhHHHHHHHH
Q 009985          238 CTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLA  317 (521)
Q Consensus       238 ~~~l~~~si~~~llt~~d~liig~~~~~~~~G~Y~~a~~l~sl~~~~~~~pi~~~~~p~fs~~~~~~~~~~~~~l~~~~~  317 (521)
                      +.|.+.+++..++.++.|+.+++++ +.++.|.|+.++++.+++. .+...+.++..|..++...++++|   +.++.++
T Consensus       244 ~~p~~~~~~~~~~~~~~~~~~~~~~-g~~~va~~~i~~~i~~~~~-~~~~~~~~a~~p~i~~~~g~~~~~---~~~~~~~  318 (460)
T 3mkt_A          244 GFPVAAALFFEVTLFAVVALLVAPL-GSTVVAAHQVALNFSSLVF-MFPMSIGAAVSIRVGHKLGEQDTK---GAAIAAN  318 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCTT-SSHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHSSCCC---TTTTHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHc-ChHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCCCHH---HHHHHHH
Confidence            9999999999999999999999999 9999999999999999888 777799999999999987655433   4556678


Q ss_pred             HHHHHHHHHHHHHHHhcccchHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHhhhhHHHHHHHhCCHHHHHHhhhHHHH
Q 009985          318 EALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLV  397 (521)
Q Consensus       318 ~~l~~~~~l~~~~~~~~~~~a~~li~ll~g~kw~~~~~~~il~~~~~~~~~~~~ng~~eaf~~a~~~~~~l~~~~~~~~~  397 (521)
                      +.++....+++|+.++....+++++.++.+|+.....+.+++++++...++.+++...+..+++.|+++.....+   .+
T Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~---~~  395 (460)
T 3mkt_A          319 VGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRT---FI  395 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHH---HH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHH---HH
Confidence            888999999999988888999999998887764322234599999999999999999999999999998766443   22


Q ss_pred             HH-HHHHHHHHHHHHh-------hchHHHHHHHHHHHHHHHHHHHHHHHH
Q 009985          398 FS-VIYIVMNVILIQS-------AGSVGLILANSLNMILRIIYSAIFIKH  439 (521)
Q Consensus       398 ~s-~i~i~~~~~l~~~-------~G~~G~i~a~~i~~~~ri~~~~~~i~~  439 (521)
                      .. ++++.+++++.+.       +|..|+.+|..+...++.....+..++
T Consensus       396 ~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~  445 (460)
T 3mkt_A          396 SYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYW  445 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSS
T ss_pred             HHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            23 5678888888888       999999999999998876666544433

PyMOL of 3mkt

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00