Citrus Sinensis ID: 009991

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520
MHCLKMATAILAFSLFSHLLLPTLLAISAQSNAIHAFPIREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKAPGSLPGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVTKLREAGAIILGKASLSEWANFRSSNAPNGFCARGGQGKNPYVLSADPWGSSSGSAISVAGNLVAVSLGTETDGSILSPSSSNSVVGIKPTVGLTSRAGVIPLTPRQDSVGPICRTVADAVYVLDAIAGFDHNDPATSAASKYIPHGGYKQFIKPHGLKGKRLGVVRNPFFNILKGSPLAQVFDHHLQTLRQEGALVIDHLEIANVNSKNSISNDETIAMLAEFKLALNAYLKELVTSPVRSLAEVIAFNNKFSDLEKIKEYGQDLLLSAEATDGIGKTEKAAILNLERFTRDGFEKLMSTNNLDALVTPRSYASTLLAVGGFPGINVPAGYDSEGVPFGICFGGLKGTEPKLIEIAYGFEQATKIRKPPSFKS
cHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccEEEEEcHHHHHHHHHHHHHHHHHcccccccccccEEEEEEcccccccccccHHHHHHccccccccHHHHHHHHHccccEEEcccHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccEEcccccccccccEEEccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccEEEEEcccccccccccHHHHHHHHHHHHHHHcccEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEcccccccHHHHcccccEEEEccccccccccEEEEEEcccccHHHHHHHHHHHHHcccccccccccc
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccHccEEEEEcHHHHHHHHHHHHHHHHHcccccccccccEEEEEccEcccccccccHHHHHHHccccccccHHHHHHHHcccEEEEEEcccHHHHcccccccccEEcccEEccccccccEccccccHHHHHHHHcccccEEEEEEcccccHHHHHHcccEEEEcccccEccccEccccccccEEEEEEccHHHHHHHHHHHEccccccHHHHccccccccccHHHHHcccccccEEEEEcHHHHccccccHHHHHHHHHHHHHHHHcccEEEcccccccEEEEEEEccHHHHHHHHcccccEEcEcccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEcccccccccEEccccccEEcccccccccEEEEEEEEcccccHHHHHHHHHHHHHHHcccccccccc
MHCLKMATAILAFSLFSHLLLPTLLAISAQSNAIHAFPIREATIKDLQLAFKQNKLTSRQLVEFYLGEihrlnpllhgvievnpdalsqadkadyerkvkapgslpglhgipillkdniatkdkmNTTAGSYALLGsvvprdagvvTKLREAGAIILGKASLsewanfrssnapngfcarggqgknpyvlsadpwgsssgsaISVAGNLVAVSLgtetdgsilspsssnsvvgikptvgltsragvipltprqdsvgpicrTVADAVYVLDAiagfdhndpatsaaskyiphggykqfikphglkgkrlgvvrnpffnilkgsplaqvFDHHLQTLRQEGALVIDHLEIanvnsknsisndETIAMLAEFKLALNAYLKELVTSPVRSLAEVIAFNNKFSDLEKIKEYGQDLLlsaeatdgigKTEKAAILNLERFTRDGFEKLMSTnnldalvtpRSYASTLLavggfpginvpagydsegvpfgicfgglkgtepKLIEIAYGFeqatkirkppsfks
MHCLKMATAILAFSLFSHLLLPTLLAISAQSNAIHAFPIREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKApgslpglhgipILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVTKLREAGAIILGKASLSEWANFRSSNAPNGFCARGGQGKNPYVLSADPWGSSSGSAISVAGNLVAVSLGTETDgsilspsssnsvvgIKPTVgltsragvipltprqdsvgpICRTVADAVYVLDAIAGFDHNDPATSAASKYIPHGGYKQFIKPHGLKGKRLGVVRNPFFNILKGSPLAQVFDHHLQTLRQEGALVIDHLEIANvnsknsisNDETIAMLAEFKLALNAYLKELVTSPVRSLAEVIAFNNKFSDLEKIKEYGQDLLLSaeatdgigkTEKAAILNLERFTRDGFEKLMSTNNLDALVTPRSYASTLLAVGGFPGINVPAGYDSEGVPFGICFGGLKGTEPKLIEIAYgfeqatkirkppsfks
MHCLKMATAILAfslfshlllptllAISAQSNAIHAFPIREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKAPGSLPGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVTKLREAGAIILGKASLSEWANFRSSNAPNGFCARGGQGKNPYVLSADPWgsssgsaisvagNLVAVSLGTETDGsilspsssnsVVGIKPTVGLTSRAGVIPLTPRQDSVGPICRTVADAVYVLDAIAGFDHNDPATSAASKYIPHGGYKQFIKPHGLKGKRLGVVRNPFFNILKGSPLAQVFDHHLQTLRQEGALVIDHLEIANVNSKNSISNDETIAMLAEFKLALNAYLKELVTSPVRSLAEVIAFNNKFSDLEKIKEYGQDLLLSAEATDGIGKTEKAAILNLERFTRDGFEKLMSTNNLDALVTPRSYASTLLAVGGFPGINVPAGYDSEGVPFGICFGGLKGTEPKLIEIAYGFEQATKIRKPPSFKS
**CLKMATAILAFSLFSHLLLPTLLAISAQSNAIHAFPIREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDA*****************SLPGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVTKLREAGAIILGKASLSEWANFRSSNAPNGFCARGGQGKNPYVLSADPW******AISVAGNLVAVSLG***************VVGIKPTVGLTSRAGVIPLTPRQDSVGPICRTVADAVYVLDAIAGFDHNDPATSAASKYIPHGGYKQFIKPHGLKGKRLGVVRNPFFNILKGSPLAQVFDHHLQTLRQEGALVIDHLEIANVNSKNSISNDETIAMLAEFKLALNAYLKELVTSPVRSLAEVIAFNNKFSDLEKIKEYGQDLLLSAEATDGIGKTEKAAILNLERFTRDGFEKLMSTNNLDALVTPRSYASTLLAVGGFPGINVPAGYDSEGVPFGICFGGLKGTEPKLIEIAYGFEQ************
*******TAILAFSLFSHLLLPTLLAISAQSNAIHAFPIREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKAPGSLPGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVTKLREAGAIILGKASLSEWANFRSSNAPNGFCARGGQGKNPYVLSADPWGSSSGSAISVAGNLVAVSLGTETDGSILSPSSSNSVVGIKPTVGLTSRAGVIPLTPRQDSVGPICRTVADAVYVLDAIAGFDHNDPATSAASKYIPHGGYKQFIKPHGLKGKRLGVVRNPFFNILKGSPLAQVFDHHLQTLRQEGALVIDHLEIANVNSKNSISNDETIAMLAEFKLALNAYLKELVTSPVRSLAEVIAFNNKFSDLEKIKEYGQDLLLSAEATDGIGKTEKAAILNLERFTRDGFEKLMSTNNLDALVTPRSYASTLLAVGGFPGINVPAGYDSEGVPFGICFGGLKGTEPKLIEIAYGFEQATKIR**PS***
MHCLKMATAILAFSLFSHLLLPTLLAISAQSNAIHAFPIREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKAPGSLPGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVTKLREAGAIILGKASLSEWANFRSSNAPNGFCARGGQGKNPYVLSADPWGSSSGSAISVAGNLVAVSLGTETDGSILSPSSSNSVVGIKPTVGLTSRAGVIPLTPRQDSVGPICRTVADAVYVLDAIAGFDHNDPATSAASKYIPHGGYKQFIKPHGLKGKRLGVVRNPFFNILKGSPLAQVFDHHLQTLRQEGALVIDHLEIANVNSKNSISNDETIAMLAEFKLALNAYLKELVTSPVRSLAEVIAFNNKFSDLEKIKEYGQDLLLSAEATDGIGKTEKAAILNLERFTRDGFEKLMSTNNLDALVTPRSYASTLLAVGGFPGINVPAGYDSEGVPFGICFGGLKGTEPKLIEIAYGFEQATKI********
*HCLKMATAILAFSLFSHLLLPTLLAISAQSNAIHAFPIREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKAPGSLPGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVTKLREAGAIILGKASLSEWANFRSSNAPNGFCARGGQGKNPYVLSADPWGSS********GNLVAVSLGTETDGSILSPSSSNSVVGIKPTVGLTSRAGVIPLTPRQDSVGPICRTVADAVYVLDAIAGFDHNDPATSAASKYIPHGGYKQFIKPHGLKGKRLGVVRNPFFNILKGSPLAQVFDHHLQTLRQEGALVIDHLEIANVNSKNSISNDETIAMLAEFKLALNAYLKELVTSPVRSLAEVIAFNNKFSDLEKIKEYGQDLLLSAEATDGIGKTEKAAILNLERFTRDGFEKLMSTNNLDALVTPRSYASTLLAVGGFPGINVPAGYDSEGVPFGICFGGLKGTEPKLIEIAYGFEQATKI********
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MHCLKMATAILAFSLFSHLLLPTLLAISAQSNAIHAFPIREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKAPGSLPGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVTKLREAGAIILGKASLSEWANFRSSNAPNGFCARGGQGKNPYVLSADPWGSSSGSAISVAGNLVAVSLGTETDGSILSPSSSNSVVGIKPTVGLTSRAGVIPLTPRQDSVGPICRTVADAVYVLDAIAGFDHNDPATSAASKYIPHGGYKQFIKPHGLKGKRLGVVRNPFFNILKGSPLAQVFDHHLQTLRQEGALVIDHLEIANVNSKNSISNDETIAMLAEFKLALNAYLKELVTSPVRSLAEVIAFNNKFSDLEKIKEYGQDLLLSAEATDGIGKTEKAAILNLERFTRDGFEKLMSTNNLDALVTPRSYASTLLAVGGFPGINVPAGYDSEGVPFGICFGGLKGTEPKLIEIAYGFEQATKIRKPPSFKS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query520 2.2.26 [Sep-21-2011]
Q9URY4583 Putative amidase C869.01 yes no 0.930 0.830 0.381 3e-82
B0JSX3483 Glutamyl-tRNA(Gln) amidot yes no 0.855 0.921 0.331 8e-42
B7KLL5483 Glutamyl-tRNA(Gln) amidot yes no 0.838 0.902 0.303 7e-40
Q46L72486 Glutamyl-tRNA(Gln) amidot yes no 0.846 0.905 0.314 3e-37
B0K3S3488 Glutamyl-tRNA(Gln) amidot yes no 0.861 0.918 0.305 4e-37
B8HY89482 Glutamyl-tRNA(Gln) amidot yes no 0.842 0.908 0.306 7e-37
A2C1Y1486 Glutamyl-tRNA(Gln) amidot yes no 0.846 0.905 0.312 7e-37
B0C269482 Glutamyl-tRNA(Gln) amidot yes no 0.85 0.917 0.311 1e-36
Q31LC2479 Glutamyl-tRNA(Gln) amidot yes no 0.842 0.914 0.308 1e-36
B0KBN4488 Glutamyl-tRNA(Gln) amidot yes no 0.853 0.909 0.304 1e-36
>sp|Q9URY4|YI01_SCHPO Putative amidase C869.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC869.01 PE=3 SV=1 Back     alignment and function desciption
 Score =  306 bits (784), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 201/527 (38%), Positives = 301/527 (57%), Gaps = 43/527 (8%)

Query: 31  SNAIHAFP--------IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEV 82
           +N+ + FP        + +ATI  LQ   +   LTS  +V  YL    ++NP ++G++++
Sbjct: 50  TNSTNIFPMPKCQNITLEDATIDQLQNYMENGILTSTDIVHCYLDRYLQVNPYVNGILQL 109

Query: 83  NPDALSQADKADYERKVKAPGSLPG-LHGIPILLKDNIATKDKMNTTAGSYALLGSVVPR 141
           NPD L+ A + D ER   A G + G LHGIP ++KDN ATKDKM+TTAGSYALLGS+VPR
Sbjct: 110 NPDVLTIASELDDER---ANGIIRGPLHGIPFIVKDNFATKDKMDTTAGSYALLGSIVPR 166

Query: 142 DAGVVTKLREAGAIILGKASLSEWANFRSSNAPNGFCARGGQGKNPYVLSADPWGSSSGS 201
           DA VV +LREAGA++ G A+LSEWA+ RS++   G+ ARGGQ + P+ L+ +P GSSSGS
Sbjct: 167 DAYVVKQLREAGAVLFGHATLSEWADMRSNDYSEGYSARGGQSRCPFNLTVNPGGSSSGS 226

Query: 202 AISVAGNLVAVSLGTETDGSILSPSSSNSVVGIKPTVGLTSRAGVIPLTPRQDSVGPICR 261
           AISVA N++A +LGTETDGSI+ P+  N VVG+KPTVGLTSR GVIP +  QD+ GPI R
Sbjct: 227 AISVASNMIAFALGTETDGSIIDPAMRNGVVGLKPTVGLTSRYGVIPESEHQDTTGPIAR 286

Query: 262 TVADAVYVLDAIAGFDHNDPATSAASKYIPH-GGYKQFI-KPHGLKGKRLGVVRNPFFNI 319
           TV DAVYV  ++ G D ND  T   +   P  G Y +F+     L+G R G+     +  
Sbjct: 287 TVRDAVYVFQSMWGIDENDIYTLNQTGKTPEDGDYMKFLSNKTSLEGARFGLPWKRLWQN 346

Query: 320 LKGSPLAQVFDHHLQTLRQEGALVIDHLEIANVN---------SKNSISNDETIAMLAEF 370
            K   + ++ +  ++ + + GA+V ++    N++            S++  E   +  +F
Sbjct: 347 AKADEIDRLLE-VVKQIEEAGAIVYNNTNFYNLDVISNDGWNWELGSVNESEYTVVKVDF 405

Query: 371 KLALNAYLKELVTSPVRSLAEVIAFNNKFSDLEKIK-------EYGQDLLLSAEATDGI- 422
              + +YL E+  + + SL +++ +NNK+   E  K         GQD  L++    G+ 
Sbjct: 406 YNNIKSYLSEVKNTEIHSLEDIVEYNNKYMGTEGGKPNIVPAFSSGQDGFLASLEWGGVK 465

Query: 423 GKTEKAAILNLERFTRD-GFEKLMS-----TNN---LDALVTPRSYASTL--LAVGGFPG 471
            +T   A+  + R ++D G +  ++     TN+   L+ L+ P   + T    A  G+P 
Sbjct: 466 NETYWQAVEYVRRTSQDEGIDYALNYTDPKTNDSFILNGLLVPSGTSITYQQAAKAGYPM 525

Query: 472 INVPAGYDSEGVPFGICFGGLKGTEPKLIEIAYGFEQATKIRKPPSF 518
           I +P G  + G PFG+        EP+LI+     E   + +  P F
Sbjct: 526 ITLPIGVKTNGRPFGLGIMHSAWQEPQLIKYGSAIEDLLQYKAKPKF 572

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
EC: 3EC: .EC: 5EC: .EC: 1EC: .EC: 4
>sp|B0JSX3|GATA_MICAN Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Microcystis aeruginosa (strain NIES-843) GN=gatA PE=3 SV=1 Back     alignment and function description
>sp|B7KLL5|GATA_CYAP7 Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Cyanothece sp. (strain PCC 7424) GN=gatA PE=3 SV=1 Back     alignment and function description
>sp|Q46L72|GATA_PROMT Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Prochlorococcus marinus (strain NATL2A) GN=gatA PE=3 SV=1 Back     alignment and function description
>sp|B0K3S3|GATA_THEPX Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Thermoanaerobacter sp. (strain X514) GN=gatA PE=3 SV=1 Back     alignment and function description
>sp|B8HY89|GATA_CYAP4 Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=gatA PE=3 SV=1 Back     alignment and function description
>sp|A2C1Y1|GATA_PROM1 Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Prochlorococcus marinus (strain NATL1A) GN=gatA PE=3 SV=1 Back     alignment and function description
>sp|B0C269|GATA_ACAM1 Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Acaryochloris marina (strain MBIC 11017) GN=gatA PE=3 SV=1 Back     alignment and function description
>sp|Q31LC2|GATA_SYNE7 Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Synechococcus elongatus (strain PCC 7942) GN=gatA PE=3 SV=1 Back     alignment and function description
>sp|B0KBN4|GATA_THEP3 Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=gatA PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query520
224078151510 predicted protein [Populus trichocarpa] 0.936 0.954 0.760 0.0
359474857514 PREDICTED: putative amidase C869.01-like 0.932 0.943 0.767 0.0
147861793514 hypothetical protein VITISV_016638 [Viti 0.932 0.943 0.763 0.0
255574730510 amidase, putative [Ricinus communis] gi| 0.967 0.986 0.722 0.0
359475039509 PREDICTED: putative amidase C869.01-like 0.925 0.944 0.752 0.0
224105219522 predicted protein [Populus trichocarpa] 0.942 0.938 0.732 0.0
225427948515 PREDICTED: putative amidase C869.01-like 0.925 0.933 0.739 0.0
359474863506 PREDICTED: LOW QUALITY PROTEIN: putative 0.917 0.942 0.746 0.0
224078139516 predicted protein [Populus trichocarpa] 0.967 0.974 0.694 0.0
449510428518 PREDICTED: putative amidase C869.01-like 0.975 0.978 0.684 0.0
>gi|224078151|ref|XP_002305495.1| predicted protein [Populus trichocarpa] gi|222848459|gb|EEE86006.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  766 bits (1978), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/489 (76%), Positives = 430/489 (87%), Gaps = 2/489 (0%)

Query: 33  AIHAFPIREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADK 92
           + HAF IREA+I DLQLAFKQ KLTSRQLVEFY+GEIH LN +L GVIE+NPDAL QAD+
Sbjct: 23  SCHAFSIREASISDLQLAFKQKKLTSRQLVEFYVGEIHGLNSVLKGVIEINPDALYQADR 82

Query: 93  ADYERKVKAPGSLPGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVTKLREA 152
           ADYER+V+APG+L GLHGIPILLKDNIATKDK+NTTAGS+ALL SVVPRDAGVV KLR++
Sbjct: 83  ADYERRVRAPGALVGLHGIPILLKDNIATKDKLNTTAGSFALLRSVVPRDAGVVAKLRKS 142

Query: 153 GAIILGKASLSEWANFRSSNAPNGFCARGGQGKNPYVLSADPWGSSSGSAISVAGNLVAV 212
           GAIILGKASLSEWA FRS NAPNGF ARGGQGKNPYVLS DP GSSSGSAISVA N VAV
Sbjct: 143 GAIILGKASLSEWAAFRSLNAPNGFSARGGQGKNPYVLSDDPCGSSSGSAISVAANFVAV 202

Query: 213 SLGTETDGSILSPSSSNSVVGIKPTVGLTSRAGVIPLTPRQDSVGPICRTVADAVYVLDA 272
           SLGTETDGSIL PS++NSVVGIKPTVGLTSRAGVIP++PRQD+VGPICRTV+DAV VLDA
Sbjct: 203 SLGTETDGSILCPSNANSVVGIKPTVGLTSRAGVIPISPRQDTVGPICRTVSDAVIVLDA 262

Query: 273 IAGFDHNDPATSAASKYIPHGGYKQFIKPHGLKGKRLGVVRNPFFNILKGSPLAQVFDHH 332
           I G D+ND AT  ASKYIPHGGYKQF+KP+GLKGKRLG+VRNPF      +  +Q F++H
Sbjct: 263 IVGVDYNDGATQEASKYIPHGGYKQFLKPYGLKGKRLGIVRNPFLGFASKAE-SQAFEYH 321

Query: 333 LQTLRQEGALVIDHLEIANVNS-KNSISNDETIAMLAEFKLALNAYLKELVTSPVRSLAE 391
           LQTLRQ G++++DHLEIAN+N+  NS  + E IA+LAEFK++LN YLK+LV SPVR+LA+
Sbjct: 322 LQTLRQGGSVIVDHLEIANINAILNSTGSGEAIALLAEFKISLNTYLKDLVASPVRTLAD 381

Query: 392 VIAFNNKFSDLEKIKEYGQDLLLSAEATDGIGKTEKAAILNLERFTRDGFEKLMSTNNLD 451
           VIAFN KF+DLEKI E+GQD+ L A+AT+GIGK EKAA++NLE+ TRDGF+KLM    LD
Sbjct: 382 VIAFNQKFADLEKINEFGQDIFLLAQATNGIGKVEKAALINLEKLTRDGFQKLMRYYKLD 441

Query: 452 ALVTPRSYASTLLAVGGFPGINVPAGYDSEGVPFGICFGGLKGTEPKLIEIAYGFEQATK 511
           ALVTP +  + +LA+GGFPGINVPAGYD +GVPFGI FGGLKGTEPKLI+IA+GFEQATK
Sbjct: 442 ALVTPGAGFAPVLAIGGFPGINVPAGYDDKGVPFGINFGGLKGTEPKLIQIAFGFEQATK 501

Query: 512 IRKPPSFKS 520
           IRKPP+FK+
Sbjct: 502 IRKPPTFKA 510

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359474857|ref|XP_002277463.2| PREDICTED: putative amidase C869.01-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|147861793|emb|CAN80909.1| hypothetical protein VITISV_016638 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255574730|ref|XP_002528273.1| amidase, putative [Ricinus communis] gi|223532310|gb|EEF34111.1| amidase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|359475039|ref|XP_003631572.1| PREDICTED: putative amidase C869.01-like isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224105219|ref|XP_002313731.1| predicted protein [Populus trichocarpa] gi|222850139|gb|EEE87686.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225427948|ref|XP_002276506.1| PREDICTED: putative amidase C869.01-like isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359474863|ref|XP_003631544.1| PREDICTED: LOW QUALITY PROTEIN: putative amidase C869.01-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224078139|ref|XP_002305493.1| predicted protein [Populus trichocarpa] gi|222848457|gb|EEE86004.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449510428|ref|XP_004163661.1| PREDICTED: putative amidase C869.01-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query520
TAIR|locus:2116890466 AT4G34880 "AT4G34880" [Arabido 0.534 0.596 0.608 1.9e-138
UNIPROTKB|Q81RH4491 BAS1925 "Amidase family protei 0.898 0.951 0.393 1.3e-77
TIGR_CMR|BA_2072491 BA_2072 "amidase family protei 0.898 0.951 0.393 1.3e-77
POMBASE|SPAC869.01583 SPAC869.01 "amidase (predicted 0.694 0.619 0.397 7.6e-74
UNIPROTKB|Q81RW6536 BAS1782 "Amidase family protei 0.909 0.882 0.338 6.5e-67
TIGR_CMR|BA_1921536 BA_1921 "amidase family protei 0.909 0.882 0.338 6.5e-67
UNIPROTKB|G4MQU3555 MGG_04756 "Glutamyl-tRNA(Gln) 0.876 0.821 0.399 8.2e-67
UNIPROTKB|G4MP85559 MGG_02188 "Glutamyl-tRNA(Gln) 0.840 0.781 0.358 7.7e-66
UNIPROTKB|Q0C2V5506 HNE_1220 "Amidase family prote 0.488 0.501 0.397 2.9e-60
UNIPROTKB|Q2KG62566 MGCH7_ch7g473 "Putative unchar 0.857 0.787 0.288 1e-36
TAIR|locus:2116890 AT4G34880 "AT4G34880" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 888 (317.7 bits), Expect = 1.9e-138, Sum P(2) = 1.9e-138
 Identities = 176/289 (60%), Positives = 228/289 (78%)

Query:   231 VVGIKPTVGLTSRAGVIPLTPRQDSVGPICRTVADAVYVLDAIAGFDHNDPATSAASKYI 290
             VVGIKP+VGLTSRAGV+P++ RQDS+GPICRTV+DAV++LDAI G+D  D AT  AS++I
Sbjct:   186 VVGIKPSVGLTSRAGVVPISLRQDSIGPICRTVSDAVHLLDAIVGYDPLDEATKTASEFI 245

Query:   291 PHGGYKQFIKPHGLKGKRLGVVRNPFFNILKGSPLAQVFDHHLQTLRQEGALVIDHLEIA 350
             P GGYKQF+   GLKGKRLG+V       +K S L    DHH++TLR+EGA+VI++L I 
Sbjct:   246 PEGGYKQFLTTSGLKGKRLGIV-------MKHSSL---LDHHIKTLRREGAIVINNLTIP 295

Query:   351 NVNS-KNSISNDETIAMLAEFKLALNAYLKELVTSPVRSLAEVIAFNNKFSDLEKIKEYG 409
             N+        + E IA+LAEFK++LNAYLKELV SPVRSLA+VIA+N +F++ EK+KE+G
Sbjct:   296 NIEVIVGGTDSGEEIALLAEFKMSLNAYLKELVKSPVRSLADVIAYNEEFAEQEKVKEWG 355

Query:   410 QDLLLSAEATDGIGKTEKAAILNLERFTRDGFEKLMSTNNLDALVTPRSYASTLLAVGGF 469
             Q++ L+AEAT G+G+ EK A+  ++  +R+G EKL+  N LDA+VT  S  S++LA+GG+
Sbjct:   356 QEVFLTAEATSGMGEKEKTALQKMKELSRNGIEKLIEENKLDAIVTLGSDLSSVLAIGGY 415

Query:   470 PGINVPAGYDSEGVPFGICFGGLKGTEPKLIEIAYGFEQATKIRKPPSF 518
             PGINVPAGYDS GVP+GI FGGL+ +EPKLIEIA+ FEQAT IRKPP F
Sbjct:   416 PGINVPAGYDSGGVPYGISFGGLRFSEPKLIEIAFAFEQATLIRKPPKF 464
GO:0004040 "amidase activity" evidence=ISS
GO:0016884 "carbon-nitrogen ligase activity, with glutamine as amido-N-donor" evidence=IEA
UNIPROTKB|Q81RH4 BAS1925 "Amidase family protein" [Bacillus anthracis (taxid:1392)] Back     alignment and assigned GO terms
TIGR_CMR|BA_2072 BA_2072 "amidase family protein" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
POMBASE|SPAC869.01 SPAC869.01 "amidase (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
UNIPROTKB|Q81RW6 BAS1782 "Amidase family protein" [Bacillus anthracis (taxid:1392)] Back     alignment and assigned GO terms
TIGR_CMR|BA_1921 BA_1921 "amidase family protein" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
UNIPROTKB|G4MQU3 MGG_04756 "Glutamyl-tRNA(Gln) amidotransferase subunit A" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
UNIPROTKB|G4MP85 MGG_02188 "Glutamyl-tRNA(Gln) amidotransferase subunit A" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
UNIPROTKB|Q0C2V5 HNE_1220 "Amidase family protein" [Hyphomonas neptunium ATCC 15444 (taxid:228405)] Back     alignment and assigned GO terms
UNIPROTKB|Q2KG62 MGCH7_ch7g473 "Putative uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
B9LZ18GATA_GEOSF6, ., 3, ., 5, ., -0.30490.85570.9175yesno
Q5N0K5GATA_SYNP66, ., 3, ., 5, ., -0.30850.84230.9144yesno
A9B9W7GATA_PROM46, ., 3, ., 5, ., -0.30660.85570.9137yesno
B2IYD7GATA_NOSP76, ., 3, ., 5, ., -0.30580.85760.9176yesno
B0K3S3GATA_THEPX6, ., 3, ., 5, ., -0.30530.86150.9180yesno
B0TDK7GATA_HELMI6, ., 3, ., 5, ., -0.3040.84230.8993yesno
Q8YY02GATA_NOSS16, ., 3, ., 5, ., -0.30190.83460.8930yesno
Q31LC2GATA_SYNE76, ., 3, ., 5, ., -0.30850.84230.9144yesno
B0C269GATA_ACAM16, ., 3, ., 5, ., -0.31160.850.9170yesno
B7KLL5GATA_CYAP76, ., 3, ., 5, ., -0.30300.83840.9026yesno
B0JSX3GATA_MICAN6, ., 3, ., 5, ., -0.33130.85570.9213yesno
B8HY89GATA_CYAP46, ., 3, ., 5, ., -0.30610.84230.9087yesno
B1WYP3GATA_CYAA56, ., 3, ., 5, ., -0.30830.83070.8962yesno
Q113L8GATA_TRIEI6, ., 3, ., 5, ., -0.30210.84420.9051yesno
A2CA16GATA_PROM36, ., 3, ., 5, ., -0.30320.85380.9135yesno
B7K0I2GATA_CYAP86, ., 3, ., 5, ., -0.30400.84800.9149yesno
B0KBN4GATA_THEP36, ., 3, ., 5, ., -0.30490.85380.9098yesno
Q8DK65GATA_THEEB6, ., 3, ., 5, ., -0.30930.84610.9128yesno
Q9URY4YI01_SCHPO3, ., 5, ., 1, ., 40.38140.93070.8301yesno
B8FCK9GATA_DESAA6, ., 3, ., 5, ., -0.30720.86150.9237yesno
A2C1Y1GATA_PROM16, ., 3, ., 5, ., -0.31290.84610.9053yesno
Q46L72GATA_PROMT6, ., 3, ., 5, ., -0.31490.84610.9053yesno
C6E6Z2GATA_GEOSM6, ., 3, ., 5, ., -0.30010.85960.9216yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query520
PRK06828491 PRK06828, PRK06828, amidase; Provisional 1e-155
PRK08137497 PRK08137, PRK08137, amidase; Provisional 1e-149
PRK06707536 PRK06707, PRK06707, amidase; Provisional 1e-116
COG0154475 COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransf 3e-92
pfam01425431 pfam01425, Amidase, Amidase 2e-77
PRK11910615 PRK11910, PRK11910, amidase; Provisional 3e-72
PRK00012459 PRK00012, gatA, aspartyl/glutamyl-tRNA amidotransf 2e-65
PRK07488472 PRK07488, PRK07488, indole acetimide hydrolase; Va 2e-61
TIGR00132460 TIGR00132, gatA, aspartyl/glutamyl-tRNA(Asn/Gln) a 2e-61
PRK07056454 PRK07056, PRK07056, amidase; Provisional 4e-39
PRK09201465 PRK09201, PRK09201, amidase; Provisional 2e-33
TIGR02713 561 TIGR02713, allophanate_hyd, allophanate hydrolase 3e-33
PRK08186 600 PRK08186, PRK08186, allophanate hydrolase; Provisi 1e-32
TIGR02715452 TIGR02715, amido_AtzE, amidohydrolase, AtzE family 3e-32
PRK06102452 PRK06102, PRK06102, hypothetical protein; Provisio 8e-32
PRK07487469 PRK07487, PRK07487, amidase; Provisional 5e-31
PRK06565566 PRK06565, PRK06565, amidase; Validated 3e-30
PRK07486484 PRK07486, PRK07486, amidase; Provisional 8e-29
PRK05962424 PRK05962, PRK05962, amidase; Validated 1e-28
PRK06170490 PRK06170, PRK06170, amidase; Provisional 1e-28
PRK07235502 PRK07235, PRK07235, amidase; Provisional 2e-28
PRK12470462 PRK12470, PRK12470, amidase; Provisional 1e-27
PRK06169466 PRK06169, PRK06169, putative amidase; Provisional 4e-27
PRK06061483 PRK06061, PRK06061, amidase; Provisional 7e-27
PRK07042464 PRK07042, PRK07042, amidase; Provisional 1e-22
PRK07869468 PRK07869, PRK07869, amidase; Provisional 5e-17
PRK08310395 PRK08310, PRK08310, amidase; Provisional 1e-16
PLN02722422 PLN02722, PLN02722, indole-3-acetamide amidohydrol 6e-16
PRK07139439 PRK07139, PRK07139, amidase; Provisional 2e-14
PRK06529482 PRK06529, PRK06529, amidase; Provisional 4e-14
PRK07869468 PRK07869, PRK07869, amidase; Provisional 3e-04
PRK06061483 PRK06061, PRK06061, amidase; Provisional 8e-04
PRK07486484 PRK07486, PRK07486, amidase; Provisional 0.002
>gnl|CDD|180715 PRK06828, PRK06828, amidase; Provisional Back     alignment and domain information 
 Score =  450 bits (1159), Expect = e-155
 Identities = 204/490 (41%), Positives = 286/490 (58%), Gaps = 21/490 (4%)

Query: 39  IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLN---PLLHGVIEVNPDALSQADKADY 95
            +E TI D+Q A +  KLTS++LV +YL  I + +   P ++ ++E+NPDA+  A+  D+
Sbjct: 10  QKELTIHDIQTAMEDGKLTSKELVMYYLHRIAKYDQDGPKINSILEINPDAIFIAEALDH 69

Query: 96  ERKVKAPGSLPGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVTKLREAGAI 155
           ERK+K       LHGIP+LLKDNI T D M+T+AG+ AL   +   DA +VTKLREAGA+
Sbjct: 70  ERKIKGVRGP--LHGIPVLLKDNIETNDSMHTSAGTIALEQHISSEDAFLVTKLREAGAV 127

Query: 156 ILGKASLSEWANFRSSNAPNGFCARGGQGKNPY---VLSADPWGSSSGSAISVAGNLVAV 212
           ILGKA+++E ANF S     G+ ARGGQ  NPY          GSS+GSAI+VA N   V
Sbjct: 128 ILGKANMTELANFMSFEMWAGYSARGGQTINPYGTGEDDMFVGGSSTGSAIAVAANFTVV 187

Query: 213 SLGTETDGSILSPSSSNSVVGIKPTVGLTSRAGVIPLTPRQDSVGPICRTVADAVYVLDA 272
           S+GTETDGSILSP+  NSVVGIKPTVGL SR G+IP T  QD+ GP  RTV DA  +L +
Sbjct: 188 SVGTETDGSILSPAVQNSVVGIKPTVGLISRRGIIPFTYSQDTAGPFARTVTDAAILLGS 247

Query: 273 IAGFDHNDPATSAASKYIPHGGYKQFIKPHGLKGKRLGVVRNPFFNILKGSPLAQ-VFDH 331
           + G D  D  T   S+ I    Y +++  +GL G ++GV  N      +     + +F  
Sbjct: 248 LTGVDEKDVVT-HKSEGIAEHDYTKYLDANGLNGAKIGVYNNAPKEYYESGEYDEKLFKE 306

Query: 332 HLQTLRQEGALVIDHLEIANVNSKNSISNDETIAMLAEFKLALNAYLKEL-VTSPVRSLA 390
            ++ LR EGA V++ ++I + + + S        +L E K +L+ YL +L  T PV S++
Sbjct: 307 TIEVLRSEGATVVEDIDIPSFHREWSWG-----VLLYELKHSLDNYLSKLPSTIPVHSIS 361

Query: 391 EVIAFNNKFSDLEKIKEYGQDLLLSAEATDGIGKTE---KAAILNLERFTRDGFEKLMST 447
           E++ FN   +  E+  +YGQ  L   +      +      A + ++      G +  +  
Sbjct: 362 ELMEFN--ENIAERALKYGQTKLERRKDFPNTLRNPEYLNARLEDIYFSQEQGIDFALEK 419

Query: 448 NNLDALVTPRSYASTLLAVGGFPGINVPAGYDSEGVPFGICFGGLKGTEPKLIEIAYGFE 507
            NLDA++ P    ST+ A  G+P I +PAGY   G PFGI       +E  LI++AY FE
Sbjct: 420 YNLDAILFPSYIGSTICAKAGYPSIAIPAGYMEGGRPFGITLASTAFSEGTLIKLAYAFE 479

Query: 508 QATKIRKPPS 517
           QATK RK P 
Sbjct: 480 QATKHRKIPG 489

Length = 491
>gnl|CDD|236161 PRK08137, PRK08137, amidase; Provisional Back     alignment and domain information
>gnl|CDD|235855 PRK06707, PRK06707, amidase; Provisional Back     alignment and domain information
>gnl|CDD|223232 COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|216494 pfam01425, Amidase, Amidase Back     alignment and domain information
>gnl|CDD|183377 PRK11910, PRK11910, amidase; Provisional Back     alignment and domain information
>gnl|CDD|234572 PRK00012, gatA, aspartyl/glutamyl-tRNA amidotransferase subunit A; Reviewed Back     alignment and domain information
>gnl|CDD|236030 PRK07488, PRK07488, indole acetimide hydrolase; Validated Back     alignment and domain information
>gnl|CDD|232842 TIGR00132, gatA, aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit Back     alignment and domain information
>gnl|CDD|235921 PRK07056, PRK07056, amidase; Provisional Back     alignment and domain information
>gnl|CDD|236409 PRK09201, PRK09201, amidase; Provisional Back     alignment and domain information
>gnl|CDD|233981 TIGR02713, allophanate_hyd, allophanate hydrolase Back     alignment and domain information
>gnl|CDD|236177 PRK08186, PRK08186, allophanate hydrolase; Provisional Back     alignment and domain information
>gnl|CDD|233982 TIGR02715, amido_AtzE, amidohydrolase, AtzE family Back     alignment and domain information
>gnl|CDD|235698 PRK06102, PRK06102, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|236029 PRK07487, PRK07487, amidase; Provisional Back     alignment and domain information
>gnl|CDD|180626 PRK06565, PRK06565, amidase; Validated Back     alignment and domain information
>gnl|CDD|236028 PRK07486, PRK07486, amidase; Provisional Back     alignment and domain information
>gnl|CDD|168315 PRK05962, PRK05962, amidase; Validated Back     alignment and domain information
>gnl|CDD|235723 PRK06170, PRK06170, amidase; Provisional Back     alignment and domain information
>gnl|CDD|235979 PRK07235, PRK07235, amidase; Provisional Back     alignment and domain information
>gnl|CDD|171524 PRK12470, PRK12470, amidase; Provisional Back     alignment and domain information
>gnl|CDD|180437 PRK06169, PRK06169, putative amidase; Provisional Back     alignment and domain information
>gnl|CDD|235686 PRK06061, PRK06061, amidase; Provisional Back     alignment and domain information
>gnl|CDD|235915 PRK07042, PRK07042, amidase; Provisional Back     alignment and domain information
>gnl|CDD|181154 PRK07869, PRK07869, amidase; Provisional Back     alignment and domain information
>gnl|CDD|181375 PRK08310, PRK08310, amidase; Provisional Back     alignment and domain information
>gnl|CDD|166363 PLN02722, PLN02722, indole-3-acetamide amidohydrolase Back     alignment and domain information
>gnl|CDD|235945 PRK07139, PRK07139, amidase; Provisional Back     alignment and domain information
>gnl|CDD|180608 PRK06529, PRK06529, amidase; Provisional Back     alignment and domain information
>gnl|CDD|181154 PRK07869, PRK07869, amidase; Provisional Back     alignment and domain information
>gnl|CDD|235686 PRK06061, PRK06061, amidase; Provisional Back     alignment and domain information
>gnl|CDD|236028 PRK07486, PRK07486, amidase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 520
PRK08137497 amidase; Provisional 100.0
PRK11910615 amidase; Provisional 100.0
PRK06828491 amidase; Provisional 100.0
COG0154475 GatA Asp-tRNAAsn/Glu-tRNAGln amidotransferase A su 100.0
PRK06707536 amidase; Provisional 100.0
PRK07042464 amidase; Provisional 100.0
PRK06169466 putative amidase; Provisional 100.0
PRK06170490 amidase; Provisional 100.0
PRK07486484 amidase; Provisional 100.0
PRK07488472 indole acetimide hydrolase; Validated 100.0
PRK07487469 amidase; Provisional 100.0
PRK09201465 amidase; Provisional 100.0
PRK06102452 hypothetical protein; Provisional 100.0
TIGR02715452 amido_AtzE amidohydrolase, AtzE family. Members of 100.0
PRK00012459 gatA aspartyl/glutamyl-tRNA amidotransferase subun 100.0
TIGR00132460 gatA glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) 100.0
PRK12470462 amidase; Provisional 100.0
PRK06565566 amidase; Validated 100.0
PRK07056454 amidase; Provisional 100.0
PRK06061483 amidase; Provisional 100.0
PRK06529482 amidase; Provisional 100.0
PRK07869468 amidase; Provisional 100.0
PRK08186 600 allophanate hydrolase; Provisional 100.0
PRK07235502 amidase; Provisional 100.0
PRK05962424 amidase; Validated 100.0
PF01425441 Amidase: Amidase; InterPro: IPR000120 Amidase sign 100.0
TIGR02713 561 allophanate_hyd allophanate hydrolase. Allophanate 100.0
PRK07139439 amidase; Provisional 100.0
PRK08310395 amidase; Provisional 100.0
PLN02722422 indole-3-acetamide amidohydrolase 100.0
KOG1211506 consensus Amidases [Translation, ribosomal structu 100.0
KOG1212560 consensus Amidases [Translation, ribosomal structu 100.0
>PRK08137 amidase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=3.9e-101  Score=821.33  Aligned_cols=469  Identities=45%  Similarity=0.695  Sum_probs=382.0

Q ss_pred             cccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhh---CCCccEEEEeChhHHHHHHHHhHHHHhhCCCCCCCcccceee
Q 009991           38 PIREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRL---NPLLHGVIEVNPDALSQADKADYERKVKAPGSLPGLHGIPIL  114 (520)
Q Consensus        38 ~~~~~~~~~l~~~~~~g~~s~~e~~~~~l~ri~~~---~~~lna~~~~~~~al~~A~~~d~~~~~~~g~~~gpL~GvPi~  114 (520)
                      ++.++++.+|+++|++|++||+|++++||+||+++   |+.+|||++++++|+++|+++|+++  ++|+.+||||||||+
T Consensus         2 ~~~~~~~~~l~~~l~~g~~t~~ev~~~~l~ri~~~~~~~~~lna~~~~~~~al~~A~~~d~~~--~~g~~~gpL~GvPi~   79 (497)
T PRK08137          2 TALEERAGALQAAMPAGAAPASQLTRAYLQRIARIDRDGPRLNAVIELNPDAEADAAALDAER--KAGKVRGPLHGIPVL   79 (497)
T ss_pred             chhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcCCCCceeEEEEeCHHHHHHHHHHHHHH--hcCCCCCCcCCceee
Confidence            46678999999999999999999999999999987   6789999999888999999999987  788888999999999


Q ss_pred             eecccccc-CCccccccchhhcCCCCCCChHHHHHHHHcCCeEEEecChhhhhhccCCCCCCCccCCCCCCCCCCCCCCC
Q 009991          115 LKDNIATK-DKMNTTAGSYALLGSVVPRDAGVVTKLREAGAIILGKASLSEWANFRSSNAPNGFCARGGQGKNPYVLSAD  193 (520)
Q Consensus       115 vKD~~~~~-gg~~tt~Gs~~~~~~~~~~da~~V~rLr~aGaii~GkTn~~E~a~~~~~~~~~~~n~~~G~t~NP~~~~~~  193 (520)
                      |||||+++ | ++||+||..++++++.+||++|+|||+||||++||||||||++..++.+.+++|++||+|+||||++|+
T Consensus        80 vKD~~~v~~G-~~tt~Gs~~~~~~~~~~DA~vV~rLr~AGAii~GKTn~~Efa~~~~~~~~~g~n~~~G~t~NP~~~~~~  158 (497)
T PRK08137         80 LKDNIDAADP-MPTTAGSLALAGNRPTRDAFLVARLRDAGAVILGKANLSEWANFRSTRSSSGWSARGGLTRNPYALDRS  158 (497)
T ss_pred             eecceeecCC-CCcCcCcHhhcCCCCCcCcHHHHHHHHCCCEEEeecChHHhhccCCCCCCCCCCCCCCCCCCCCCCCCC
Confidence            99999999 8 999999999999999999999999999999999999999999755444577899999999999999999


Q ss_pred             CCCCChhHHHHHhcCCcceeeccccCCccccccccCCceeecCCCCcccCCCCCCCCCCCcccccccCCHHHHHHHHHHH
Q 009991          194 PWGSSSGSAISVAGNLVAVSLGTETDGSILSPSSSNSVVGIKPTVGLTSRAGVIPLTPRQDSVGPICRTVADAVYVLDAI  273 (520)
Q Consensus       194 pGGSSgGsAaaVAag~~~~alGtDtgGSiRiPAa~~Gv~GlKPT~G~vs~~G~~p~~~~~d~~Gp~aRsv~D~a~~~~~l  273 (520)
                      |||||||||||||+|++|+|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||||||+|+++++++|
T Consensus       159 ~GGSSgGsAaAVAaG~~~~aiGtDtgGSiRiPAa~cGv~GlKPT~Grvs~~G~~~~~~s~d~~Gp~arsv~D~a~~l~vl  238 (497)
T PRK08137        159 PCGSSSGSGAAVAAGLAAVAIGTETDGSITCPAAINGLVGLKPTVGLVSRDGIVPISHSQDTAGPMTRTVADAAAVLTAI  238 (497)
T ss_pred             CCcCccHHHHHHHcCCCceeeecCCCCccccchhhcCeeeecCCCCceeCCCCCCcccccCcccCeeCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCCCCCccccccCCCCCCccccccCCCCCCcEEEEECCCccCCCCChHHHHHHHHHHHHHHHCCCEEEeecccCccc
Q 009991          274 AGFDHNDPATSAASKYIPHGGYKQFIKPHGLKGKRLGVVRNPFFNILKGSPLAQVFDHHLQTLRQEGALVIDHLEIANVN  353 (520)
Q Consensus       274 ~g~d~~d~~~~~~~~~~p~~~~~~~l~~~~~~~lRIgv~~~~~~~~~~d~~v~~a~~~a~~~L~~~G~~vve~~~~p~~~  353 (520)
                      .|+|+.|+.+...+.  ...+|.+.+....++++||||+.+.+   ..+++++++++++++.|+++||+|++ +++|.+.
T Consensus       239 ~g~d~~d~~~~~~~~--~~~~~~~~~~~~~~~~lrIgv~~~~~---~~~~~v~~a~~~a~~~L~~~G~~v~~-~~~~~~~  312 (497)
T PRK08137        239 AGGDPADPATASAPA--PAVDYVAALDADALRGARLGVARNYL---GYHPEVDAQFERALAELKAAGAVVID-VVDLDDG  312 (497)
T ss_pred             hCCCCCCcccccCCC--CccchhhhccccccCCCEEEEEchhc---cCCHHHHHHHHHHHHHHHHCCCEEEe-ccCCchh
Confidence            999999876543210  01134332222246789999997643   37899999999999999999999987 5666544


Q ss_pred             ccccccchHHHHHHHHHHHHHHHHHHHhc-cCCcccHHHHHHhhccccchHHHHhhcHHHHHhhhhcCCCcHHH-HHHHH
Q 009991          354 SKNSISNDETIAMLAEFKLALNAYLKELV-TSPVRSLAEVIAFNNKFSDLEKIKEYGQDLLLSAEATDGIGKTE-KAAIL  431 (520)
Q Consensus       354 ~~~~~~~~~~~~~~~e~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~  431 (520)
                      ...   ..+..++..|+...+..|+.... .....++.+++..++.... .....+++.+.........++..+ ..+.+
T Consensus       313 ~~~---~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  388 (497)
T PRK08137        313 DWG---EAEKVVLLHEFKAGLNAYLRSTAPHAPVRTLADLIAFNRAQHA-REMPYFGQELFEQAQAAPGLDDPAYLDALA  388 (497)
T ss_pred             hHH---HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHhhccch-hhhcccCHHHHHHHHccCCCCHHHHHHHHH
Confidence            322   23345666787777776654321 1123345555443321110 111234444443333333344443 33333


Q ss_pred             HHHHH-HHHHHHHHHhhCCCCEEEecCcc----------------hhhhhhhcCCCeeeeccCCCCCCCceeEEEEccCC
Q 009991          432 NLERF-TRDGFEKLMSTNNLDALVTPRSY----------------ASTLLAVGGFPGINVPAGYDSEGVPFGICFGGLKG  494 (520)
Q Consensus       432 ~~~~~-~~~~~~~~~~~~~~D~ll~Pt~~----------------~t~~~nl~G~PaisvP~G~~~~GlPvGlQlvg~~~  494 (520)
                      .++.. .++.+.++|+++++|+||+|+++                ++.+||++|+|+++||+|++ +|||+||||+|++|
T Consensus       389 ~~~~~~~~~~~~~~~~~~~~D~ll~Pt~~~ap~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~GlPvGvQlig~~~  467 (497)
T PRK08137        389 DAKRLAGPEGIDAALKEHRLDALVAPTTGPAWLIDLINGDSFGGSSSTPAAVAGYPHLTVPMGQV-QGLPVGLSFIGAAW  467 (497)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEeCCCCCCcccccccccccccccccccHhhCCCeEEEeCCCC-CCcCeEEEEECCCC
Confidence            33333 34678999986679999999964                35689999999999999998 89999999999999


Q ss_pred             ChHHHHHHHHHHHHHcCCCCCCCCCC
Q 009991          495 TEPKLIEIAYGFEQATKIRKPPSFKS  520 (520)
Q Consensus       495 ~D~~LL~~A~~lE~~~~~~~~P~~~~  520 (520)
                      +|+.||++|++||+..+||++|.|.+
T Consensus       468 ~d~~LL~~a~~lE~~~~~~~~p~~~~  493 (497)
T PRK08137        468 SEARLLELGYAYEQATHARREPRFVE  493 (497)
T ss_pred             CHHHHHHHHHHHHHhcCcCCCCCCCC
Confidence            99999999999999999999997754

>PRK11910 amidase; Provisional Back     alignment and domain information
>PRK06828 amidase; Provisional Back     alignment and domain information
>COG0154 GatA Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK06707 amidase; Provisional Back     alignment and domain information
>PRK07042 amidase; Provisional Back     alignment and domain information
>PRK06169 putative amidase; Provisional Back     alignment and domain information
>PRK06170 amidase; Provisional Back     alignment and domain information
>PRK07486 amidase; Provisional Back     alignment and domain information
>PRK07488 indole acetimide hydrolase; Validated Back     alignment and domain information
>PRK07487 amidase; Provisional Back     alignment and domain information
>PRK09201 amidase; Provisional Back     alignment and domain information
>PRK06102 hypothetical protein; Provisional Back     alignment and domain information
>TIGR02715 amido_AtzE amidohydrolase, AtzE family Back     alignment and domain information
>PRK00012 gatA aspartyl/glutamyl-tRNA amidotransferase subunit A; Reviewed Back     alignment and domain information
>TIGR00132 gatA glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, A subunit Back     alignment and domain information
>PRK12470 amidase; Provisional Back     alignment and domain information
>PRK06565 amidase; Validated Back     alignment and domain information
>PRK07056 amidase; Provisional Back     alignment and domain information
>PRK06061 amidase; Provisional Back     alignment and domain information
>PRK06529 amidase; Provisional Back     alignment and domain information
>PRK07869 amidase; Provisional Back     alignment and domain information
>PRK08186 allophanate hydrolase; Provisional Back     alignment and domain information
>PRK07235 amidase; Provisional Back     alignment and domain information
>PRK05962 amidase; Validated Back     alignment and domain information
>PF01425 Amidase: Amidase; InterPro: IPR000120 Amidase signature (AS) enzymes are a large group of hydrolytic enzymes that contain a conserved stretch of approximately 130 amino acids known as the AS sequence Back     alignment and domain information
>TIGR02713 allophanate_hyd allophanate hydrolase Back     alignment and domain information
>PRK07139 amidase; Provisional Back     alignment and domain information
>PRK08310 amidase; Provisional Back     alignment and domain information
>PLN02722 indole-3-acetamide amidohydrolase Back     alignment and domain information
>KOG1211 consensus Amidases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1212 consensus Amidases [Translation, ribosomal structure and biogenesis; Lipid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query520
1m21_A503 Crystal Structure Analysis Of The Peptide Amidase P 1e-84
3h0l_A478 Structure Of Trna-Dependent Amidotransferase Gatcab 6e-24
2df4_A485 Structure Of Trna-Dependent Amidotransferase Gatcab 1e-23
3al0_A475 Crystal Structure Of The Glutamine Transamidosome F 3e-23
2gi3_A476 Crystal Structure Of Glutamyl-Trna(Gln) Amidotransf 3e-20
3kfu_E471 Crystal Structure Of The Transamidosome Length = 47 3e-18
3a1i_A521 Crystal Structure Of Rhodococcus Sp. N-771 Amidase 9e-14
3a1k_A521 Crystal Structure Of Rhodococcus Sp. N771 Amidase L 1e-13
2dc0_A434 Crystal Structure Of Amidase Length = 434 2e-12
4gyr_A 621 Granulibacter Bethesdensis Allophanate Hydrolase Ap 5e-11
3a2p_A493 Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolas 5e-08
3a2q_A493 Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolas 5e-08
1obl_A414 Crystal Structure Of The S133a Mutant Of Malonamida 1e-04
1o9o_A414 Crystal Structure Of The S131a Mutant Of Malonamida 1e-04
>pdb|1M21|A Chain A, Crystal Structure Analysis Of The Peptide Amidase Pam In Complex With The Competitive Inhibitor Chymostatin Length = 503 Back     alignment and structure 
Iteration: 1

 Score =  310 bits (794), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 201/508 (39%), Positives = 284/508 (55%), Gaps = 43/508 (8%)
Query: 37  FPIREATIKDLQLAFKQNKLTSRQLVEFYLGEI---HRLNPLLHGVIEVNPDALSQADKA 93
           FP  E  + DLQ      +L S  L + YL  I    R  P L  VIE+NPDAL +A  A
Sbjct: 6   FPYAETDVADLQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVIELNPDALKEA--A 63
Query: 94  DYERKVKAPGSLPGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVTKLREAG 153
           + +R+ +       LHGIP+LLKDNI     M T+AGS AL G   P DA +V +LR+AG
Sbjct: 64  ERDRERRDGRLRGPLHGIPLLLKDNI-NAAPMATSAGSLALQG-FRPDDAYLVRRLRDAG 121
Query: 154 AIILGKASLSEWANFRSSNAPNGFCARGGQGKNPYVLSADPWXXXXXXXXXXXXNLVAVS 213
           A++LGK +LSEWANFR +++ +G+ ARGGQ +NPY +S  P             NL +V+
Sbjct: 122 AVVLGKTNLSEWANFRGNDSISGWSARGGQTRNPYRISHSPCGSSSGSAVAVAANLASVA 181
Query: 214 LGTETDGXXXXXXXXXXVVGIKPTVGLTSRAGVIPLTPRQDSVGPICRTVADAVYVLDAI 273
           +GTETDG          VVG+KPTVGL SR G+IP++  QD+ GP+ R+VADA  VL AI
Sbjct: 182 IGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARSVADAAAVLTAI 241
Query: 274 AGFDHNDPATSAASKYIPHGGYKQFIKPHGLKGKRLGVVRNPFFNILKGSPLAQVFDHHL 333
           AG D  DPAT+       +  Y   + P GL+GKR+G+++ P        PL    +   
Sbjct: 242 AGRDDADPATATMPGRAVY-DYTARLDPQGLRGKRIGLLQTPLLKYRGMPPL---IEQAA 297
Query: 334 QTLRQEGALVIDHLEIANVNSKNSISNDETIAMLAEFKLALNAYLKELVTSPVRSLAEVI 393
             LR+ GA+V+  +E+ N   + + +  E   +L EFK  L  Y      +P+RSLA++I
Sbjct: 298 TELRRAGAVVV-PVELPN---QGAWAEAERTLLLYEFKAGLERYFNTH-RAPLRSLADLI 352
Query: 394 AFNNKFSDLEKIKEYGQDLLLSAEATDGIGKTEKAAILNLERFTR----DGFEKLMSTNN 449
           AFN   S  +++  +GQ+LL+ A+AT G+   + A I       R    +G +  ++ + 
Sbjct: 353 AFNQAHSK-QELGLFGQELLVEADATAGL--ADPAYIRARSDARRLAGPEGIDAALAAHQ 409
Query: 450 LDALVTP-----------------RSYASTLLAVGGFPGINVPAGYDSEGVPFGICFGGL 492
           LDALV P                  SY++   AV G+P + VP G   +G+P G+ F G 
Sbjct: 410 LDALVAPTTGVAWPIRSEGDDFPGESYSAA--AVAGYPSLTVPMG-QIDGLPVGLLFMGT 466
Query: 493 KGTEPKLIEIAYGFEQATKIRKPPSFKS 520
             +EPKLIE+AY +EQ T+ R+PP F +
Sbjct: 467 AWSEPKLIEMAYAYEQRTRARRPPHFDT 494
>pdb|3H0L|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From Aquifex Aeolicus Length = 478 Back     alignment and structure
>pdb|2DF4|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab Complexed With Mn2+ Length = 485 Back     alignment and structure
>pdb|3AL0|A Chain A, Crystal Structure Of The Glutamine Transamidosome From Thermotoga Maritima In The Glutamylation State Length = 475 Back     alignment and structure
>pdb|2GI3|A Chain A, Crystal Structure Of Glutamyl-Trna(Gln) Amidotransferase Subunit A (Tm1272) From Thermotoga Maritima At 1.80 A Resolution Length = 476 Back     alignment and structure
>pdb|3KFU|E Chain E, Crystal Structure Of The Transamidosome Length = 471 Back     alignment and structure
>pdb|3A1I|A Chain A, Crystal Structure Of Rhodococcus Sp. N-771 Amidase Complexed With Benzamide Length = 521 Back     alignment and structure
>pdb|3A1K|A Chain A, Crystal Structure Of Rhodococcus Sp. N771 Amidase Length = 521 Back     alignment and structure
>pdb|2DC0|A Chain A, Crystal Structure Of Amidase Length = 434 Back     alignment and structure
>pdb|4GYR|A Chain A, Granulibacter Bethesdensis Allophanate Hydrolase Apo Length = 621 Back     alignment and structure
>pdb|3A2P|A Chain A, Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolase Length = 493 Back     alignment and structure
>pdb|3A2Q|A Chain A, Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolase Complexed With Substrate Length = 493 Back     alignment and structure
>pdb|1OBL|A Chain A, Crystal Structure Of The S133a Mutant Of Malonamidase E2 Complexed With Malonate From Bradyrhizobium Japonicum Length = 414 Back     alignment and structure
>pdb|1O9O|A Chain A, Crystal Structure Of The S131a Mutant Of Malonamidase E2 Complexed With Malonamate From Bradyrhizobium Japonicum Length = 414 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query520
1m22_A503 Peptide amidase, PAM; eleven-stranded beta sheet, 0.0
1o9p_A414 Malonamidase E2; malonate; 1.8A {Bradyrhizobium ja 4e-72
2dc0_A434 Probable amidase; structural genomics, NPPSFA, nat 3e-67
3ip4_A485 Glutamyl-tRNA(Gln) amidotransferase subunit A; mul 9e-66
3ip4_A485 Glutamyl-tRNA(Gln) amidotransferase subunit A; mul 4e-04
3kfu_E471 Glutamyl-tRNA(Gln) amidotransferase subunit A; ASP 5e-64
3kfu_E471 Glutamyl-tRNA(Gln) amidotransferase subunit A; ASP 3e-04
3h0l_A478 Glutamyl-tRNA(Gln) amidotransferase subunit A; mul 1e-63
3h0l_A478 Glutamyl-tRNA(Gln) amidotransferase subunit A; mul 5e-04
3a1k_A521 Amidase; AS family enzyme, hydrolase; 2.17A {Rhodo 3e-63
3a2q_A493 6-aminohexanoate-cyclic-dimer hydrolase; alpha/bet 1e-61
2gi3_A476 Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1 2e-58
2gi3_A476 Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1 4e-04
3ppm_A573 Fatty-acid amide hydrolase 1; protein-inhibitor co 2e-50
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP: c.117.1.1 PDB: 1m21_A* Length = 503 Back     alignment and structure
 Score =  588 bits (1517), Expect = 0.0
 Identities = 210/504 (41%), Positives = 297/504 (58%), Gaps = 35/504 (6%)

Query: 37  FPIREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLN---PLLHGVIEVNPDALSQADKA 93
           FP  E  + DLQ      +L S  L + YL  I  L+   P L  VIE+NPDAL +A + 
Sbjct: 6   FPYAETDVADLQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVIELNPDALKEAAER 65

Query: 94  DYERKVKAPGSLPGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVTKLREAG 153
           D ER+         LHGIP+LLKDNI     M T+AGS AL G   P DA +V +LR+AG
Sbjct: 66  DRERR--DGRLRGPLHGIPLLLKDNINAAP-MATSAGSLALQG-FRPDDAYLVRRLRDAG 121

Query: 154 AIILGKASLSEWANFRSSNAPNGFCARGGQGKNPYVLSADPWGSSSGSAISVAGNLVAVS 213
           A++LGK +LSEWANFR +++ +G+ ARGGQ +NPY +S  P GSSSGSA++VA NL +V+
Sbjct: 122 AVVLGKTNLSEWANFRGNDSISGWSARGGQTRNPYRISHSPCGSSSGSAVAVAANLASVA 181

Query: 214 LGTETDGSILSPSSSNSVVGIKPTVGLTSRAGVIPLTPRQDSVGPICRTVADAVYVLDAI 273
           +GTETDGSI+ P++ N VVG+KPTVGL SR G+IP++  QD+ GP+ R+VADA  VL AI
Sbjct: 182 IGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARSVADAAAVLTAI 241

Query: 274 AGFDHNDPATSAASKYIPHGGYKQFIKPHGLKGKRLGVVRNPFFNILKGSPLAQVFDHHL 333
           AG D  DPAT+       +  Y   + P GL+GKR+G+++ P         +  + +   
Sbjct: 242 AGRDDADPATATMPGRAVY-DYTARLDPQGLRGKRIGLLQTPLLK---YRGMPPLIEQAA 297

Query: 334 QTLRQEGALVIDHLEIANVNSKNSISNDETIAMLAEFKLALNAYLKELVTSPVRSLAEVI 393
             LR+ GA+V+  +E+ N     + +  E   +L EFK  L  Y      +P+RSLA++I
Sbjct: 298 TELRRAGAVVVP-VELPNQ---GAWAEAERTLLLYEFKAGLERYFNTH-RAPLRSLADLI 352

Query: 394 AFNNKFSDLEKIKEYGQDLLLSAEATDGIGKTE--KAAILNLERFTRDGFEKLMSTNNLD 451
           AFN   S  E +  +GQ+LL+ A+AT G+      +A          +G +  ++ + LD
Sbjct: 353 AFNQAHSKQE-LGLFGQELLVEADATAGLADPAYIRARSDARRLAGPEGIDAALAAHQLD 411

Query: 452 ALVTPRSY---------------ASTLLAVGGFPGINVPAGYDSEGVPFGICFGGLKGTE 496
           ALV P +                + +  AV G+P + VP G   +G+P G+ F G   +E
Sbjct: 412 ALVAPTTGVAWPIRSEGDDFPGESYSAAAVAGYPSLTVPMGQ-IDGLPVGLLFMGTAWSE 470

Query: 497 PKLIEIAYGFEQATKIRKPPSFKS 520
           PKLIE+AY +EQ T+ R+PP F +
Sbjct: 471 PKLIEMAYAYEQRTRARRPPHFDT 494
>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP: c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A 1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A Length = 414 Back     alignment and structure
>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Thermus thermophilus} Length = 434 Back     alignment and structure
>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} PDB: 2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A Length = 485 Back     alignment and structure
>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} PDB: 2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A Length = 485 Back     alignment and structure
>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus} Length = 471 Back     alignment and structure
>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus} Length = 471 Back     alignment and structure
>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_A 3h0r_A* Length = 478 Back     alignment and structure
>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_A 3h0r_A* Length = 478 Back     alignment and structure
>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB: 3a1i_A Length = 521 Back     alignment and structure
>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A Length = 493 Back     alignment and structure
>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural genomics, joint center for structura genomics, JCSG; HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP: c.117.1.1 PDB: 3al0_A* Length = 476 Back     alignment and structure
>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural genomics, joint center for structura genomics, JCSG; HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP: c.117.1.1 PDB: 3al0_A* Length = 476 Back     alignment and structure
>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH, oxazole, oxadiazole, endoca degradation, membrane protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB: 2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A* 2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A* 3qj9_A* 3qkv_A* Length = 573 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query520
1m22_A503 Peptide amidase, PAM; eleven-stranded beta sheet, 100.0
3ip4_A485 Glutamyl-tRNA(Gln) amidotransferase subunit A; mul 100.0
3h0l_A478 Glutamyl-tRNA(Gln) amidotransferase subunit A; mul 100.0
3kfu_E471 Glutamyl-tRNA(Gln) amidotransferase subunit A; ASP 100.0
2dc0_A434 Probable amidase; structural genomics, NPPSFA, nat 100.0
3a2q_A493 6-aminohexanoate-cyclic-dimer hydrolase; alpha/bet 100.0
2gi3_A476 Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1 100.0
3ppm_A573 Fatty-acid amide hydrolase 1; protein-inhibitor co 100.0
1o9p_A414 Malonamidase E2; malonate; 1.8A {Bradyrhizobium ja 100.0
3a1k_A521 Amidase; AS family enzyme, hydrolase; 2.17A {Rhodo 100.0
>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP: c.117.1.1 PDB: 1m21_A* Back     alignment and structure
Probab=100.00  E-value=3.1e-106  Score=860.31  Aligned_cols=471  Identities=44%  Similarity=0.725  Sum_probs=397.3

Q ss_pred             CcccccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhC---CCccEEEEeChhHHHHHHHHhHHHHhhCCCCCCCcccc
Q 009991           35 HAFPIREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLN---PLLHGVIEVNPDALSQADKADYERKVKAPGSLPGLHGI  111 (520)
Q Consensus        35 ~~~~~~~~~~~~l~~~~~~g~~s~~e~~~~~l~ri~~~~---~~lna~~~~~~~al~~A~~~d~~~~~~~g~~~gpL~Gv  111 (520)
                      ..|++.++++.+|+++|++|++|++|++++||+||+++|   +.+|||+++++||+++|+++|+++  ++|+..||||||
T Consensus         4 ~~~~~~~~~~~~l~~~l~~g~~s~~el~~a~l~ri~~~~~~~~~lna~~~~~~~Al~~A~~~d~~~--~~g~~~gpL~Gv   81 (503)
T 1m22_A            4 VPFPYAETDVADLQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVIELNPDALKEAAERDRER--RDGRLRGPLHGI   81 (503)
T ss_dssp             -CCTTTTCCHHHHHHHHHTTSCCHHHHHHHHHHHHHHHTTSTTCCCCEEEECTTHHHHHHHHHHHH--HTTCCCSTTTTC
T ss_pred             CCCCcccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcCCCCceEEEEECCHHHHHHHHHHHHHH--HcCCCCCCcCCc
Confidence            467889999999999999999999999999999999999   999999999988999999999987  788888999999


Q ss_pred             eeeeeccccccCCccccccchhhcCCCCCCChHHHHHHHHcCCeEEEecChhhhhhccCCCCCCCccCCCCCCCCCCCCC
Q 009991          112 PILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVTKLREAGAIILGKASLSEWANFRSSNAPNGFCARGGQGKNPYVLS  191 (520)
Q Consensus       112 Pi~vKD~~~~~gg~~tt~Gs~~~~~~~~~~da~~V~rLr~aGaii~GkTn~~E~a~~~~~~~~~~~n~~~G~t~NP~~~~  191 (520)
                      ||+|||||+++| ++||+||..+.++++ +||++|+|||+||||++||||||||+++.++.+.+++|++||+|+||||++
T Consensus        82 Pi~vKD~~~v~G-~~Tt~Gs~~~~~~~~-~dA~vV~rLr~AGAii~GKTn~~Efa~~~~~~~~~~~n~~~G~t~NP~~~~  159 (503)
T 1m22_A           82 PLLLKDNINAAP-MATSAGSLALQGFRP-DDAYLVRRLRDAGAVVLGKTNLSEWANFRGNDSISGWSARGGQTRNPYRIS  159 (503)
T ss_dssp             EEEEETTBCCTT-SCCCTTCGGGTTCCC-CCCHHHHHHHHTTCEEEEEECCSHHHHCSCTTCCTTEETTTEECCCTTSTT
T ss_pred             eeEeecccccCC-CCcCCCCHhhcCCCC-CCcHHHHHHHHCCCEEEeccCHHHHhcccCCCCCCCCCCCCCCCCCCCCCC
Confidence            999999999997 999999999999999 999999999999999999999999998665556789999999999999999


Q ss_pred             CCCCCCChhHHHHHhcCCcceeeccccCCccccccccCCceeecCCCCcccCCCCCCCCCCCcccccccCCHHHHHHHHH
Q 009991          192 ADPWGSSSGSAISVAGNLVAVSLGTETDGSILSPSSSNSVVGIKPTVGLTSRAGVIPLTPRQDSVGPICRTVADAVYVLD  271 (520)
Q Consensus       192 ~~pGGSSgGsAaaVAag~~~~alGtDtgGSiRiPAa~~Gv~GlKPT~G~vs~~G~~p~~~~~d~~Gp~aRsv~D~a~~~~  271 (520)
                      |+|||||||||||||+|++++|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||||||+|++++++
T Consensus       160 ~~pGGSSgGsAaAVAag~~~~alGtDtgGSIRiPAa~cGvvGlKPT~Grvs~~G~~p~~~sld~~Gp~arsv~D~a~~l~  239 (503)
T 1m22_A          160 HSPCGSSSGSAVAVAANLASVAIGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARSVADAAAVLT  239 (503)
T ss_dssp             BCCCSSSHHHHHHHHTTSSSEEEEEESSSTTHHHHHHTTSEEEECCTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHH
T ss_pred             CCCCccHHHHHHHHHcCCCceeeecCCCchhhhhHHHhCceEEECCCCCcCCCCcCCccCCCCeeCcccCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCCCCCCccccccCCCCCCccccccCCCCCCcEEEEECCCccCCCCChHHHHHHHHHHHHHHHCCCEEEeecccCc
Q 009991          272 AIAGFDHNDPATSAASKYIPHGGYKQFIKPHGLKGKRLGVVRNPFFNILKGSPLAQVFDHHLQTLRQEGALVIDHLEIAN  351 (520)
Q Consensus       272 ~l~g~d~~d~~~~~~~~~~p~~~~~~~l~~~~~~~lRIgv~~~~~~~~~~d~~v~~a~~~a~~~L~~~G~~vve~~~~p~  351 (520)
                      +|.|+|+.|+.+...+. .+..+|...+....++++||||+.+++ .  ++++++++++++++.|+++||+|++ +++|.
T Consensus       240 vl~g~d~~d~~~~~~~~-~~~~~~~~~~~~~~~~~lrIgv~~~~~-~--~~~~v~~a~~~a~~~L~~~G~~v~~-~~~p~  314 (503)
T 1m22_A          240 AIAGRDDADPATATMPG-RAVYDYTARLDPQGLRGKRIGLLQTPL-L--KYRGMPPLIEQAATELRRAGAVVVP-VELPN  314 (503)
T ss_dssp             HHCCCCTTCGGGGGCTT-CCCCCGGGGCCTTTTTTCEEEEECSGG-G--GSTTHHHHHHHHHHHHHHTTCEEEE-ECCTT
T ss_pred             HHcCCCCCCcccccccc-ccccchhhhccccCCCCCEEEEECccc-c--CCHHHHHHHHHHHHHHHHcCCEEEE-eCCCc
Confidence            99999999976543311 011245544433356889999998754 2  6899999999999999999999987 68776


Q ss_pred             ccccccccchHHHHHHHHHHHHHHHHHHHhccCCcccHHHHHHhhccccchHHHHhhcHHHHHhhhhcCCCc-HHHHHHH
Q 009991          352 VNSKNSISNDETIAMLAEFKLALNAYLKELVTSPVRSLAEVIAFNNKFSDLEKIKEYGQDLLLSAEATDGIG-KTEKAAI  430 (520)
Q Consensus       352 ~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~  430 (520)
                      ++++.   ..+..++.+|+..++..|+.... .+.+.+.+++.+++.++. +....++++++........++ .+|.++.
T Consensus       315 ~~~~~---~~~~~~~~~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  389 (503)
T 1m22_A          315 QGAWA---EAERTLLLYEFKAGLERYFNTHR-APLRSLADLIAFNQAHSK-QELGLFGQELLVEADATAGLADPAYIRAR  389 (503)
T ss_dssp             TTTTH---HHHHHHHHHHHHHHHHHHHHHTT-CSCCSHHHHHHHHHHTHH-HHSSSSCCHHHHHHHTCCCTTCHHHHHHH
T ss_pred             HHHHH---HHHHHHHHHHHHHHHHHHHHhcC-cccccHHHHHHHhhhcch-hcccccCHHHHHHHHhcCCCCHHHHHHHH
Confidence            54332   23456677888888888887653 344566666554322210 112234445544444443333 4555555


Q ss_pred             HHHHHHHHHH-HHHHHhhCCCCEEEecCcc---------------hhhhhhhcCCCeeeeccCCCCCCCceeEEEEccCC
Q 009991          431 LNLERFTRDG-FEKLMSTNNLDALVTPRSY---------------ASTLLAVGGFPGINVPAGYDSEGVPFGICFGGLKG  494 (520)
Q Consensus       431 ~~~~~~~~~~-~~~~~~~~~~D~ll~Pt~~---------------~t~~~nl~G~PaisvP~G~~~~GlPvGlQlvg~~~  494 (520)
                      ++++++.++. +.++|+++++|+||+|+++               +|.+||++|+|+||||+|++ +|||+||||||++|
T Consensus       390 ~~~~~~~~~~~~~~~~~~~~~D~ll~Pt~~~a~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~GlPvGvqlvg~~~  468 (503)
T 1m22_A          390 SDARRLAGPEGIDAALAAHQLDALVAPTTGVAWPIRSEGDDFPGESYSAAAVAGYPSLTVPMGQI-DGLPVGLLFMGTAW  468 (503)
T ss_dssp             HHHHHHHTTTTHHHHHHHTTCSEEEEECCCCCCBTTC---CCTTCCHHHHHHHTCCEEEEEEEEE-TTEEEEEEEECSTT
T ss_pred             HHHHHHHHHHHHHHHHhhcCCCEEEeCCCccCcccccccCcccccccccchhhCCCeEEeccccC-CCCCeEEEEECCCC
Confidence            5555554442 9999987779999999863               57889999999999999987 89999999999999


Q ss_pred             ChHHHHHHHHHHHHHcCCCCCCCCCC
Q 009991          495 TEPKLIEIAYGFEQATKIRKPPSFKS  520 (520)
Q Consensus       495 ~D~~LL~~A~~lE~~~~~~~~P~~~~  520 (520)
                      +|++||++|++||++++|+++|.+.|
T Consensus       469 ~d~~lL~~A~~~E~~~~~~~~p~~~~  494 (503)
T 1m22_A          469 SEPKLIEMAYAYEQRTRARRPPHFDT  494 (503)
T ss_dssp             CHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_pred             ChHHHHHHHHHHHHhhCCCCCCCCCC
Confidence            99999999999999999999998876
>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} SCOP: c.117.1.1 PDB: 2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A Back     alignment and structure
>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_A 3h0r_A* Back     alignment and structure
>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus} Back     alignment and structure
>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Thermus thermophilus} Back     alignment and structure
>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A Back     alignment and structure
>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural genomics, joint center for structura genomics, JCSG; HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP: c.117.1.1 PDB: 3al0_A* Back     alignment and structure
>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH, oxazole, oxadiazole, endoca degradation, membrane protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB: 2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A* 2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A* 3qj9_A* 3qkv_A* Back     alignment and structure
>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP: c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A 1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A Back     alignment and structure
>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB: 3a1i_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 520
d2f2aa1485 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransf 4e-77
d1m22a_490 c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomon 2e-70
d2gi3a1475 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransf 8e-69
d1mt5a_537 c.117.1.1 (A:) Fatty acid amide hydrolase (oleamid 3e-47
d1ocka_412 c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium jap 2e-33
>d2f2aa1 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransferase subunit A {Staphylococcus aureus [TaxId: 1280]} Length = 485 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Glutamyl-tRNA(Gln) amidotransferase subunit A
species: Staphylococcus aureus [TaxId: 1280]

 Score =  248 bits (635), Expect = 4e-77
 Identities = 132/504 (26%), Positives = 220/504 (43%), Gaps = 54/504 (10%)

Query: 39  IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYER 97
           IR  ++++L    K  K+    +V+     I   +P +   + ++ + A+ +A + D  +
Sbjct: 3   IRYESVENLLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDELQ 62

Query: 98  KVKAPGSLPG-LHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVTKLREAGAII 156
              A   + G L GIP+ +KDNI T   + TT  S  L G V   ++ V+ KL +  A++
Sbjct: 63  ---AKDQMDGKLFGIPMGIKDNIITNG-LETTCASKMLEGFVPIYESTVMEKLHKENAVL 118

Query: 157 LGKASLSEWANFRSSNAPNGFCARGGQGKNPYVLSADPWGSSSGSAISVAGNLVAVSLGT 216
           +GK ++ E+A   S+              NP+   A P GSS GSA +VA  LV +SLG+
Sbjct: 119 IGKLNMDEFAMGGSTETSYFKKTV-----NPFDHKAVPGGSSGGSAAAVAAGLVPLSLGS 173

Query: 217 ETDGSILSPSSSNSVVGIKPTVGLTSRAGVIPLTPRQDSVGPICRTVADAVYVLDAIAGF 276
           +T GSI  P++   VVG+KPT G  SR G++      D +GP+ R V D   VL+AI+G 
Sbjct: 174 DTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGA 233

Query: 277 DHNDPATSAASKYIPHGGYKQFIKPHGLKGKRLGVVRNPFFNILKGSPLAQVFDHHLQTL 336
           D ND  ++     +    +   I    +KG ++ + +      +    + +   + ++TL
Sbjct: 234 DVNDSTSAP----VDDVDFTSEIGK-DIKGLKVALPKEYLGEGV-ADDVKEAVQNAVETL 287

Query: 337 RQEGALVIDHLEIANVNSKNSISNDETIAMLAEFKLALNAYL---KELVTSPVRSLAEVI 393
           +  GA+V    E++  N+K  I +   IA  +E    L+ +        +    SL E+ 
Sbjct: 288 KSLGAVVE---EVSLPNTKFGIPSYYVIAS-SEASSNLSRFDGIRYGYHSKEAHSLEELY 343

Query: 394 AFNNK--FSDLEKIKEYGQDLLLSAEATDGIGKTEKAAILNLERFTRDGFEKLMSTNNLD 451
             +    F    K + +     LS+   D   K  +     ++      FE        D
Sbjct: 344 KMSRSEGFGKEVKRRIFLGTFALSSGYYDAYYKKSQKVRTLIKNDFDKVFEN------YD 397

Query: 452 ALVTP---------------------RSYASTLLAVGGFPGINVPAGYDSEGVPFGICFG 490
            +V P                         +T + + G PGI+VP G  S G P G+ F 
Sbjct: 398 VVVGPTAPTTAFNLGEEIDDPLTMYANDLLTTPVNLAGLPGISVPCGQ-SNGRPIGLQFI 456

Query: 491 GLKGTEPKLIEIAYGFEQATKIRK 514
           G    E  L  +AY +E    +  
Sbjct: 457 GKPFDEKTLYRVAYQYETQYNLHD 480
>d1m22a_ c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomonas maltophilia [TaxId: 40324]} Length = 490 Back     information, alignment and structure
>d2gi3a1 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransferase subunit A {Thermotoga maritima [TaxId: 2336]} Length = 475 Back     information, alignment and structure
>d1mt5a_ c.117.1.1 (A:) Fatty acid amide hydrolase (oleamide hydrolase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 537 Back     information, alignment and structure
>d1ocka_ c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium japonicum [TaxId: 375]} Length = 412 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query520
d2f2aa1485 Glutamyl-tRNA(Gln) amidotransferase subunit A {Sta 100.0
d1m22a_490 Peptide amidase Pam {Stenotrophomonas maltophilia 100.0
d1mt5a_537 Fatty acid amide hydrolase (oleamide hydrolase) {R 100.0
d2gi3a1475 Glutamyl-tRNA(Gln) amidotransferase subunit A {The 100.0
d1ocka_412 Malonamidase E2 {Bradyrhizobium japonicum [TaxId: 100.0
>d2f2aa1 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransferase subunit A {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Glutamyl-tRNA(Gln) amidotransferase subunit A
species: Staphylococcus aureus [TaxId: 1280]

Probab=100.00  E-value=7.7e-100  Score=811.05  Aligned_cols=450  Identities=27%  Similarity=0.410  Sum_probs=373.6

Q ss_pred             cccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCccEEEEeChh-HHHHHHHHhHHHHhhCCCCCCCcccceeeee
Q 009991           38 PIREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAPGSLPGLHGIPILLK  116 (520)
Q Consensus        38 ~~~~~~~~~l~~~~~~g~~s~~e~~~~~l~ri~~~~~~lna~~~~~~~-al~~A~~~d~~~~~~~g~~~gpL~GvPi~vK  116 (520)
                      .|++.|+.||+++|++|++|++||+++||+||+++|+.+|||+++++| |+++|+++|+++  ++|+.+||||||||+||
T Consensus         2 ~~~~~s~~~l~~~~~~~~~s~~e~~~~~l~ri~~~~~~lna~~~~~~~~a~~~A~~~d~~~--~~~~~~gpL~GiPi~vK   79 (485)
T d2f2aa1           2 SIRYESVENLLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDELQ--AKDQMDGKLFGIPMGIK   79 (485)
T ss_dssp             CSTTCCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHH--HTTCCCSTTTTCEEEEE
T ss_pred             CCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCccEEEEeCHHHHHHHHHHHHHHH--HCCCCCCCcCcCeEEEE
Confidence            578899999999999999999999999999999999999999999998 999999999988  78999999999999999


Q ss_pred             ccccccCCccccccchhhcCCCCCCChHHHHHHHHcCCeEEEecChhhhhhccCCCCCCCccCCCCCCCCCCCCCCCCCC
Q 009991          117 DNIATKDKMNTTAGSYALLGSVVPRDAGVVTKLREAGAIILGKASLSEWANFRSSNAPNGFCARGGQGKNPYVLSADPWG  196 (520)
Q Consensus       117 D~~~~~gg~~tt~Gs~~~~~~~~~~da~~V~rLr~aGaii~GkTn~~E~a~~~~~~~~~~~n~~~G~t~NP~~~~~~pGG  196 (520)
                      |+|+++| ++||+||.++.++.+.+|+++|++||++|||++|||||+||++     +..+.|.+||+|+||||++++|||
T Consensus        80 D~~~v~g-~~tt~Gs~~~~~~~~~~d~~~v~~l~~~Gai~~gkt~~~e~~~-----~~~~~n~~~g~~~NP~~~~~~~GG  153 (485)
T d2f2aa1          80 DNIITNG-LETTCASKMLEGFVPIYESTVMEKLHKENAVLIGKLNMDEFAM-----GGSTETSYFKKTVNPFDHKAVPGG  153 (485)
T ss_dssp             TTBCBTT-BCCCTTCGGGTTCCCSSCCHHHHHHHHTTCEEEEEECCSGGGC-----CSSSTTCSSCCCCBTTBTTBCCCS
T ss_pred             cccccCC-CccCCcChhhccCCccccccccccccccccccccccchhhhcc-----cccccCccccCcCCCCCcccccCC
Confidence            9999996 9999999999999999999999999999999999999999998     678889999999999999999999


Q ss_pred             CChhHHHHHhcCCcceeeccccCCccccccccCCceeecCCCCcccCCCCCCCCCCCcccccccCCHHHHHHHHHHHhCC
Q 009991          197 SSSGSAISVAGNLVAVSLGTETDGSILSPSSSNSVVGIKPTVGLTSRAGVIPLTPRQDSVGPICRTVADAVYVLDAIAGF  276 (520)
Q Consensus       197 SSgGsAaaVAag~~~~alGtDtgGSiRiPAa~~Gv~GlKPT~G~vs~~G~~p~~~~~d~~Gp~aRsv~D~a~~~~~l~g~  276 (520)
                      |||||||+||+|++++|+|||||||||+||+||||||||||+|+||+.|++|+++++|++|||||||+|+++++++|.|+
T Consensus       154 SSgGsaaavA~g~~~~alGtDt~GSiR~PAa~~Gl~G~kPt~G~is~~g~~~~~~~~d~~Gpmar~v~D~~~ll~~~~g~  233 (485)
T d2f2aa1         154 SSGGSAAAVAAGLVPLSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGA  233 (485)
T ss_dssp             SSHHHHHHHHTTSCSCEEEECSSSTTHHHHHHTTCEEEECCTTSBCCTTBCCSCTTTCCEEEEESSHHHHHHHHHHHBSC
T ss_pred             ccccchhhHHhccCceEEecCCCchhhhhHHHhCceeecCCCCCCCCCCCCCCcccCCeeccccCCHHHHHHHHhhcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCccccccCCCCCCccccccCCCCCCcEEEEECCCccCCCCChHHHHHHHHHHHHHHHCCCEEEeecccCcccccc
Q 009991          277 DHNDPATSAASKYIPHGGYKQFIKPHGLKGKRLGVVRNPFFNILKGSPLAQVFDHHLQTLRQEGALVIDHLEIANVNSKN  356 (520)
Q Consensus       277 d~~d~~~~~~~~~~p~~~~~~~l~~~~~~~lRIgv~~~~~~~~~~d~~v~~a~~~a~~~L~~~G~~vve~~~~p~~~~~~  356 (520)
                      ++.|+.+.+.    +..+|...+. .+++++|||++.+++.. .++++++++++++++.|+++|++|++ +++|++....
T Consensus       234 ~~~d~~~~~~----~~~~~~~~~~-~~~~~lrig~~~~~~~~-~~~~~i~~a~~~a~~~L~~~G~~v~e-v~lp~~~~~~  306 (485)
T d2f2aa1         234 DVNDSTSAPV----DDVDFTSEIG-KDIKGLKVALPKEYLGE-GVADDVKEAVQNAVETLKSLGAVVEE-VSLPNTKFGI  306 (485)
T ss_dssp             BTTBTTSCCC----CCCCCSTTTT-CCCTTCEEEEEGGGGST-TSCHHHHHHHHHHHHHHHHTTCEEEE-ECCTTGGGHH
T ss_pred             cccccccCCC----Cccchhhhhc-CCccCCEEEEEcccccC-cCCHHHHHHHHHHHHHHHHCCCEEEE-eCCCchhhhH
Confidence            9999766543    3335655554 45789999999887655 68999999999999999999999987 7888654432


Q ss_pred             cccchHHHHHHHHHHHHHHHHHHHhc---cCCcccHHHHHHhhccccchHHHHhhcHHHHHh-----hhhcCCCcHHHHH
Q 009991          357 SISNDETIAMLAEFKLALNAYLKELV---TSPVRSLAEVIAFNNKFSDLEKIKEYGQDLLLS-----AEATDGIGKTEKA  428 (520)
Q Consensus       357 ~~~~~~~~~~~~e~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~  428 (520)
                         ..+..+...|+..++..|.....   ....+++.++....+       ...+++++..+     ......+....+.
T Consensus       307 ---~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~~~~~~g~~~~~~~~~~a~~~  376 (485)
T d2f2aa1         307 ---PSYYVIASSEASSNLSRFDGIRYGYHSKEAHSLEELYKMSR-------SEGFGKEVKRRIFLGTFALSSGYYDAYYK  376 (485)
T ss_dssp             ---HHHHHHHHHHHHHHTTTCSSSSSSCCCSSCCSHHHHHHHHH-------HHHSCHHHHHHHHHHHHHHSTTTTTTTHH
T ss_pred             ---HHHHHHHHHHHHHHHHHhhhhhhccccccccCHHHHHHHhh-------hhhcCHHHHHHHHhhhhhhcchhHHHHHH
Confidence               22334445555544433221111   111234444443321       11222222211     1111222222233


Q ss_pred             HHHHHHHHHHHHHHHHHhhCCCCEEEecCcc---------------------hhhhhhhcCCCeeeeccCCCCCCCceeE
Q 009991          429 AILNLERFTRDGFEKLMSTNNLDALVTPRSY---------------------ASTLLAVGGFPGINVPAGYDSEGVPFGI  487 (520)
Q Consensus       429 a~~~~~~~~~~~~~~~~~~~~~D~ll~Pt~~---------------------~t~~~nl~G~PaisvP~G~~~~GlPvGl  487 (520)
                      ..++.+..+++.++++|+  ++|+||+|+++                     +|.+||++|+|+++||+|++ +|||+||
T Consensus       377 ~~~~~~~~~~~~~~~~f~--~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~G~~-dGlPvGl  453 (485)
T d2f2aa1         377 KSQKVRTLIKNDFDKVFE--NYDVVVGPTAPTTAFNLGEEIDDPLTMYANDLLTTPVNLAGLPGISVPCGQS-NGRPIGL  453 (485)
T ss_dssp             HHHHHHHHHHHHHHHHTT--TCSEEEEESSSSSCCBTTTSTTCHHHHHGGGTTTHHHHHHTCCEEEEEEEEE-TTEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHc--cCCEEEeCCCCCCCCCcccccCCHHHHhhhhHHHHHHHHHCCCeEEEECCCC-CCCCEeE
Confidence            334444445566888886  59999999874                     46789999999999999975 8999999


Q ss_pred             EEEccCCChHHHHHHHHHHHHHcCCCCC
Q 009991          488 CFGGLKGTEPKLIEIAYGFEQATKIRKP  515 (520)
Q Consensus       488 Qlvg~~~~D~~LL~~A~~lE~~~~~~~~  515 (520)
                      ||||++|+|..||++|++||++++|++.
T Consensus       454 Qiig~~~~D~~LL~~A~~~E~~~~~~~~  481 (485)
T d2f2aa1         454 QFIGKPFDEKTLYRVAYQYETQYNLHDV  481 (485)
T ss_dssp             EEECSTTCHHHHHHHHHHHHHHSCCTTT
T ss_pred             EEECCCCCHHHHHHHHHHHHhhCCCCcC
Confidence            9999999999999999999999999754
>d1m22a_ c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomonas maltophilia [TaxId: 40324]} Back     information, alignment and structure
>d1mt5a_ c.117.1.1 (A:) Fatty acid amide hydrolase (oleamide hydrolase) {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2gi3a1 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransferase subunit A {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ocka_ c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium japonicum [TaxId: 375]} Back     information, alignment and structure